Query 005084
Match_columns 715
No_of_seqs 182 out of 353
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 17:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0442 Structure-specific end 100.0 7E-124 1E-128 1053.9 41.6 596 2-715 14-617 (892)
2 TIGR00596 rad1 DNA repair prot 100.0 8E-121 2E-125 1067.8 46.1 523 85-711 1-545 (814)
3 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-63 2.3E-68 543.1 45.3 364 4-439 18-388 (542)
4 PRK13766 Hef nuclease; Provisi 100.0 2.7E-61 5.8E-66 572.7 47.1 364 2-439 16-387 (773)
5 KOG0354 DEAD-box like helicase 100.0 3.8E-35 8.3E-40 335.4 27.5 361 2-439 63-435 (746)
6 cd00268 DEADc DEAD-box helicas 99.4 2.2E-11 4.8E-16 121.7 17.9 171 2-179 22-201 (203)
7 smart00487 DEXDc DEAD-like hel 99.1 2.9E-09 6.4E-14 103.0 16.6 177 2-184 9-192 (201)
8 PF00270 DEAD: DEAD/DEAH box h 99.1 1.6E-09 3.5E-14 104.3 14.7 154 4-158 2-164 (169)
9 PRK11192 ATP-dependent RNA hel 99.1 4.4E-09 9.5E-14 118.0 18.8 171 2-179 24-206 (434)
10 PF04851 ResIII: Type III rest 99.1 7.4E-10 1.6E-14 107.5 10.7 147 2-157 4-183 (184)
11 TIGR00603 rad25 DNA repair hel 99.0 1.6E-09 3.4E-14 127.6 14.0 191 2-210 256-459 (732)
12 COG1061 SSL2 DNA or RNA helica 99.0 5.8E-09 1.3E-13 117.8 15.5 186 2-209 37-231 (442)
13 PHA02558 uvsW UvsW helicase; P 98.9 3.8E-09 8.2E-14 121.0 12.1 142 2-158 115-261 (501)
14 PTZ00424 helicase 45; Provisio 98.9 9.9E-09 2.2E-13 113.4 14.9 154 2-157 51-212 (401)
15 PRK11448 hsdR type I restricti 98.9 6.3E-09 1.4E-13 128.5 14.3 152 2-158 414-596 (1123)
16 TIGR00614 recQ_fam ATP-depende 98.9 1.6E-08 3.4E-13 115.1 14.4 169 2-181 12-192 (470)
17 TIGR01389 recQ ATP-dependent D 98.8 7.2E-08 1.6E-12 112.6 18.2 164 3-177 15-188 (591)
18 PLN00206 DEAD-box ATP-dependen 98.8 1.8E-07 3.9E-12 107.8 19.8 166 2-175 144-323 (518)
19 PTZ00110 helicase; Provisional 98.8 1E-07 2.2E-12 110.5 17.6 155 2-157 153-319 (545)
20 PRK10590 ATP-dependent RNA hel 98.8 2.5E-07 5.3E-12 104.9 18.3 154 3-157 25-191 (456)
21 cd00046 DEXDc DEAD-like helica 98.7 1.3E-07 2.8E-12 86.1 12.7 138 19-156 2-144 (144)
22 PRK11776 ATP-dependent RNA hel 98.7 2.4E-07 5.1E-12 105.0 16.9 156 2-158 27-190 (460)
23 PRK11057 ATP-dependent DNA hel 98.7 3.1E-07 6.7E-12 107.8 16.5 167 2-179 26-202 (607)
24 PLN03142 Probable chromatin-re 98.6 4.4E-06 9.5E-11 102.4 25.1 149 2-158 170-331 (1033)
25 PRK04837 ATP-dependent RNA hel 98.6 8.3E-07 1.8E-11 99.5 16.6 156 2-158 31-202 (423)
26 PRK10917 ATP-dependent DNA hel 98.6 4.1E-07 8.8E-12 108.1 13.9 147 2-158 262-421 (681)
27 PRK01172 ski2-like helicase; P 98.6 7.2E-07 1.6E-11 105.9 15.9 164 2-176 23-192 (674)
28 PRK13767 ATP-dependent helicas 98.6 1.2E-06 2.5E-11 106.9 17.8 154 2-158 33-219 (876)
29 PRK02362 ski2-like helicase; P 98.6 5.4E-07 1.2E-11 108.1 14.6 153 2-157 24-182 (737)
30 PRK11634 ATP-dependent RNA hel 98.6 2.1E-06 4.5E-11 101.2 18.8 154 3-157 30-191 (629)
31 PRK05580 primosome assembly pr 98.5 2.1E-06 4.5E-11 102.1 18.5 171 2-185 145-327 (679)
32 PRK04914 ATP-dependent helicas 98.5 3.8E-06 8.3E-11 102.4 21.0 153 2-158 153-317 (956)
33 PRK00254 ski2-like helicase; P 98.5 1.5E-06 3.3E-11 104.0 16.8 154 2-158 24-181 (720)
34 PLN03137 ATP-dependent DNA hel 98.5 1.4E-06 3.1E-11 106.1 16.5 167 3-180 462-645 (1195)
35 PRK01297 ATP-dependent RNA hel 98.5 2.5E-06 5.3E-11 97.2 17.2 154 2-157 110-281 (475)
36 TIGR00580 mfd transcription-re 98.5 1.3E-06 2.9E-11 106.3 14.0 146 3-158 453-611 (926)
37 TIGR00643 recG ATP-dependent D 98.5 9.9E-07 2.1E-11 104.0 12.4 146 2-158 236-398 (630)
38 TIGR03817 DECH_helic helicase/ 98.5 3.8E-06 8.2E-11 100.8 17.4 155 2-158 37-206 (742)
39 COG1204 Superfamily II helicas 98.4 4E-06 8.6E-11 100.4 17.1 187 2-203 32-228 (766)
40 PRK10689 transcription-repair 98.4 1.5E-06 3.3E-11 108.0 13.9 146 3-158 602-760 (1147)
41 TIGR00348 hsdR type I site-spe 98.4 2.5E-06 5.4E-11 101.2 14.8 147 3-158 240-404 (667)
42 PRK04537 ATP-dependent RNA hel 98.4 3.9E-06 8.4E-11 98.0 15.2 155 3-158 33-204 (572)
43 TIGR03714 secA2 accessory Sec 98.3 4.2E-05 9E-10 91.0 21.0 154 2-174 69-240 (762)
44 PRK09401 reverse gyrase; Revie 98.3 7.7E-06 1.7E-10 102.1 15.3 124 2-129 81-215 (1176)
45 TIGR00595 priA primosomal prot 98.2 9.6E-06 2.1E-10 93.3 13.0 152 21-185 1-162 (505)
46 TIGR01054 rgy reverse gyrase. 98.2 4.4E-05 9.6E-10 95.5 18.1 125 2-130 79-214 (1171)
47 TIGR03158 cas3_cyano CRISPR-as 98.2 0.00011 2.4E-09 81.0 19.1 160 5-173 1-202 (357)
48 PRK09200 preprotein translocas 98.1 0.00028 6E-09 84.8 22.3 122 3-129 78-213 (790)
49 PRK14701 reverse gyrase; Provi 98.1 3.2E-05 6.9E-10 99.1 15.0 123 3-129 81-214 (1638)
50 COG0514 RecQ Superfamily II DN 98.0 3E-05 6.4E-10 89.7 12.2 161 6-178 22-193 (590)
51 PF00176 SNF2_N: SNF2 family N 97.8 7.9E-05 1.7E-09 78.3 10.2 154 16-178 24-192 (299)
52 PHA02653 RNA helicase NPH-II; 97.8 0.00022 4.9E-09 84.6 14.2 156 3-171 166-343 (675)
53 TIGR02621 cas3_GSU0051 CRISPR- 97.8 0.00028 6E-09 85.0 14.1 149 3-158 17-217 (844)
54 PRK11664 ATP-dependent RNA hel 97.7 0.00035 7.6E-09 84.8 14.6 143 8-158 12-161 (812)
55 KOG0331 ATP-dependent RNA heli 97.7 0.00057 1.2E-08 78.1 14.0 149 6-155 118-280 (519)
56 PRK09751 putative ATP-dependen 97.6 0.00044 9.5E-09 87.8 14.1 146 22-176 1-182 (1490)
57 TIGR01970 DEAH_box_HrpB ATP-de 97.6 0.00052 1.1E-08 83.2 13.8 145 6-158 7-158 (819)
58 COG0513 SrmB Superfamily II DN 97.5 0.0011 2.3E-08 76.8 14.4 152 4-157 54-216 (513)
59 COG1205 Distinct helicase fami 97.5 0.0016 3.5E-08 79.4 15.4 154 3-157 72-243 (851)
60 TIGR01587 cas3_core CRISPR-ass 97.5 0.00044 9.6E-09 75.5 9.5 138 19-157 1-166 (358)
61 COG4096 HsdR Type I site-speci 97.4 0.00053 1.2E-08 81.1 10.3 143 3-158 167-322 (875)
62 PRK13104 secA preprotein trans 97.4 0.00085 1.8E-08 81.0 11.1 155 2-174 81-247 (896)
63 KOG0952 DNA/RNA helicase MER3/ 97.3 0.0045 9.9E-08 74.7 15.6 211 6-233 115-351 (1230)
64 PRK12899 secA preprotein trans 97.3 0.0014 3.1E-08 79.2 11.6 135 2-151 93-239 (970)
65 TIGR00963 secA preprotein tran 97.3 0.00072 1.6E-08 80.4 8.8 124 2-129 55-190 (745)
66 PRK13103 secA preprotein trans 97.2 0.0014 2.9E-08 79.2 10.6 153 2-173 81-246 (913)
67 KOG0351 ATP-dependent DNA heli 97.2 0.0027 5.8E-08 77.7 13.0 184 4-207 267-468 (941)
68 PF07652 Flavi_DEAD: Flaviviru 97.2 0.0028 6.1E-08 61.3 10.4 130 19-158 6-138 (148)
69 KOG0385 Chromatin remodeling c 97.1 0.0042 9.1E-08 72.9 12.3 209 2-218 168-416 (971)
70 PRK11131 ATP-dependent RNA hel 97.0 0.0073 1.6E-07 75.9 14.0 143 6-157 79-229 (1294)
71 TIGR01967 DEAH_box_HrpA ATP-de 96.7 0.015 3.2E-07 73.5 13.6 143 7-157 73-222 (1283)
72 PF07517 SecA_DEAD: SecA DEAD- 96.7 0.008 1.7E-07 63.9 9.5 122 3-128 77-210 (266)
73 COG1201 Lhr Lhr-like helicases 96.6 0.019 4.2E-07 69.2 13.4 163 4-176 25-206 (814)
74 KOG0330 ATP-dependent RNA heli 96.6 0.011 2.3E-07 65.2 9.7 156 5-167 87-253 (476)
75 COG4581 Superfamily II RNA hel 96.6 0.023 5E-07 69.9 13.4 159 4-178 122-288 (1041)
76 KOG0333 U5 snRNP-like RNA heli 96.3 0.12 2.5E-06 59.2 16.1 163 6-177 272-450 (673)
77 KOG0352 ATP-dependent DNA heli 96.2 0.033 7.2E-07 61.9 11.2 164 4-177 23-202 (641)
78 PRK12904 preprotein translocas 96.2 0.011 2.4E-07 71.4 7.8 153 3-173 81-245 (830)
79 KOG1000 Chromatin remodeling p 96.1 0.043 9.4E-07 62.1 11.4 178 1-195 198-382 (689)
80 PRK13107 preprotein translocas 95.8 0.025 5.3E-07 68.7 8.3 154 3-174 82-247 (908)
81 PRK12898 secA preprotein trans 95.4 0.07 1.5E-06 63.3 10.2 93 19-113 118-214 (656)
82 COG1200 RecG RecG-like helicas 95.3 0.17 3.7E-06 59.6 12.6 143 4-158 265-423 (677)
83 KOG0336 ATP-dependent RNA heli 95.1 0.1 2.2E-06 57.9 9.5 137 8-148 249-400 (629)
84 PRK12906 secA preprotein trans 95.0 0.058 1.3E-06 65.1 8.1 122 3-129 80-214 (796)
85 PRK12326 preprotein translocas 94.6 0.097 2.1E-06 62.4 8.3 151 3-173 78-241 (764)
86 KOG0348 ATP-dependent RNA heli 94.2 0.29 6.3E-06 56.1 10.5 124 5-130 163-302 (708)
87 PRK12902 secA preprotein trans 93.7 0.24 5.3E-06 60.3 9.3 120 2-129 84-219 (939)
88 KOG0344 ATP-dependent RNA heli 93.7 0.19 4.1E-06 58.1 8.0 178 5-210 162-357 (593)
89 PF13872 AAA_34: P-loop contai 93.6 0.73 1.6E-05 49.9 11.9 183 21-215 66-301 (303)
90 PF09848 DUF2075: Uncharacteri 93.3 0.97 2.1E-05 49.8 12.7 178 21-219 4-212 (352)
91 KOG0347 RNA helicase [RNA proc 93.3 0.29 6.3E-06 56.3 8.4 122 19-140 221-365 (731)
92 KOG0387 Transcription-coupled 92.9 0.82 1.8E-05 54.7 11.7 151 1-157 205-376 (923)
93 KOG0951 RNA helicase BRR2, DEA 92.8 1.1 2.4E-05 56.1 12.9 208 6-230 314-546 (1674)
94 KOG0338 ATP-dependent RNA heli 92.7 0.59 1.3E-05 53.5 9.7 139 19-157 220-369 (691)
95 CHL00122 secA preprotein trans 92.6 0.34 7.4E-06 58.9 8.2 121 4-129 77-210 (870)
96 TIGR03117 cas_csf4 CRISPR-asso 91.9 1.1 2.3E-05 53.5 11.2 40 89-130 180-221 (636)
97 KOG0329 ATP-dependent RNA heli 91.9 0.72 1.6E-05 48.7 8.5 160 6-173 69-238 (387)
98 COG4098 comFA Superfamily II D 91.4 3.3 7.2E-05 45.7 13.1 172 3-203 99-279 (441)
99 PHA02533 17 large terminase pr 91.3 0.55 1.2E-05 54.9 7.9 120 2-129 60-183 (534)
100 PRK12903 secA preprotein trans 91.0 0.85 1.8E-05 55.6 9.2 118 3-128 78-211 (925)
101 KOG0335 ATP-dependent RNA heli 91.0 1.3 2.7E-05 50.8 10.1 126 15-140 109-252 (482)
102 PRK00411 cdc6 cell division co 91.0 21 0.00045 39.6 19.8 151 19-194 57-218 (394)
103 COG1198 PriA Primosomal protei 91.0 4.4 9.5E-05 49.1 15.0 162 5-185 202-382 (730)
104 COG1110 Reverse gyrase [DNA re 90.4 1.6 3.4E-05 53.9 10.6 122 3-130 84-218 (1187)
105 KOG1002 Nucleotide excision re 90.3 2.3 5E-05 48.7 11.1 167 2-176 185-372 (791)
106 KOG0342 ATP-dependent RNA heli 90.3 6.1 0.00013 45.3 14.5 161 4-172 107-281 (543)
107 COG0610 Type I site-specific r 90.1 1.9 4.1E-05 53.9 11.5 135 18-157 274-414 (962)
108 COG4889 Predicted helicase [Ge 90.0 0.93 2E-05 54.9 8.1 127 2-130 162-319 (1518)
109 KOG0339 ATP-dependent RNA heli 90.0 9.4 0.0002 44.1 15.5 169 6-181 250-430 (731)
110 COG1202 Superfamily II helicas 89.2 5 0.00011 47.0 12.8 177 2-191 217-409 (830)
111 KOG0353 ATP-dependent DNA heli 88.7 10 0.00023 42.1 14.3 183 4-208 97-299 (695)
112 PRK09694 helicase Cas3; Provis 88.5 4.7 0.0001 49.9 13.1 66 92-158 411-482 (878)
113 KOG0920 ATP-dependent RNA heli 88.1 3.7 8E-05 50.7 11.7 147 4-157 176-330 (924)
114 PRK15483 type III restriction- 87.9 3.2 6.9E-05 51.6 11.0 136 18-157 60-239 (986)
115 KOG0949 Predicted helicase, DE 87.9 3.3 7.1E-05 51.0 10.7 160 4-171 514-682 (1330)
116 KOG4284 DEAD box protein [Tran 87.5 1.5 3.3E-05 51.6 7.4 151 19-171 64-222 (980)
117 KOG0343 RNA Helicase [RNA proc 87.0 4.2 9.1E-05 47.3 10.5 124 4-129 94-229 (758)
118 COG1643 HrpA HrpA-like helicas 86.5 7.4 0.00016 48.0 13.0 140 10-158 58-207 (845)
119 KOG0345 ATP-dependent RNA heli 85.3 15 0.00033 42.2 13.6 149 4-157 31-199 (567)
120 PRK14873 primosome assembly pr 85.3 5.7 0.00012 47.8 11.2 125 26-158 169-305 (665)
121 PF03354 Terminase_1: Phage Te 85.3 7.3 0.00016 44.9 11.8 145 4-156 1-163 (477)
122 KOG0391 SNF2 family DNA-depend 84.8 19 0.00041 45.6 14.9 264 2-302 616-897 (1958)
123 KOG0392 SNF2 family DNA-depend 83.0 1.1E+02 0.0023 39.5 20.3 146 1-158 975-1140(1549)
124 KOG0947 Cytoplasmic exosomal R 82.6 4.6 0.0001 49.6 8.7 115 4-129 300-417 (1248)
125 cd00009 AAA The AAA+ (ATPases 82.5 18 0.00038 32.6 11.0 37 20-56 22-58 (151)
126 KOG0950 DNA polymerase theta/e 82.0 9.5 0.00021 47.0 11.0 154 16-186 239-408 (1008)
127 PF13401 AAA_22: AAA domain; P 81.7 1.2 2.6E-05 40.9 2.8 23 19-41 6-28 (131)
128 PRK12900 secA preprotein trans 81.6 2.4 5.3E-05 52.5 6.1 119 2-128 137-271 (1025)
129 PF13086 AAA_11: AAA domain; P 81.4 6.4 0.00014 39.3 8.2 62 4-66 4-74 (236)
130 KOG0340 ATP-dependent RNA heli 80.8 3.6 7.8E-05 45.5 6.4 125 4-130 32-168 (442)
131 KOG0389 SNF2 family DNA-depend 80.3 82 0.0018 38.6 17.5 111 19-135 420-544 (941)
132 KOG0922 DEAH-box RNA helicase 80.2 11 0.00025 44.6 10.6 142 4-158 54-207 (674)
133 PRK12901 secA preprotein trans 80.1 5.5 0.00012 49.7 8.3 151 2-173 168-335 (1112)
134 KOG0948 Nuclear exosomal RNA h 79.8 5.4 0.00012 47.9 7.8 116 4-129 132-249 (1041)
135 KOG0384 Chromodomain-helicase 79.4 6.5 0.00014 49.5 8.6 203 2-219 371-621 (1373)
136 COG1203 CRISPR-associated heli 78.8 17 0.00036 44.4 12.0 156 3-159 197-383 (733)
137 KOG0350 DEAD-box ATP-dependent 78.3 3.7 8.1E-05 47.1 5.8 132 4-136 162-316 (620)
138 PF03237 Terminase_6: Terminas 78.3 4.5 9.7E-05 43.3 6.3 144 21-177 1-154 (384)
139 PF13604 AAA_30: AAA domain; P 77.9 5.6 0.00012 40.2 6.5 62 4-66 4-67 (196)
140 KOG0328 Predicted ATP-dependen 77.6 5.6 0.00012 42.8 6.5 151 5-156 53-210 (400)
141 PRK08074 bifunctional ATP-depe 77.3 16 0.00034 45.8 11.5 55 6-61 262-321 (928)
142 KOG0390 DNA repair protein, SN 75.9 6.5 0.00014 47.8 7.2 180 2-193 239-442 (776)
143 COG0553 HepA Superfamily II DN 75.0 16 0.00035 44.5 10.5 164 2-171 339-523 (866)
144 KOG0951 RNA helicase BRR2, DEA 74.9 4.9 0.00011 50.7 5.9 141 6-157 1148-1300(1674)
145 TIGR02768 TraA_Ti Ti-type conj 74.3 21 0.00046 43.7 11.2 98 5-129 356-453 (744)
146 PRK14974 cell division protein 73.5 26 0.00057 38.8 10.8 118 21-157 144-265 (336)
147 KOG0331 ATP-dependent RNA heli 71.6 4.2 9.2E-05 47.2 4.2 25 415-439 339-363 (519)
148 PRK09112 DNA polymerase III su 71.6 17 0.00037 40.4 8.8 72 114-194 140-211 (351)
149 KOG0346 RNA helicase [RNA proc 71.4 25 0.00055 40.2 9.9 160 13-181 53-229 (569)
150 KOG0924 mRNA splicing factor A 71.4 16 0.00034 43.8 8.6 135 5-157 360-511 (1042)
151 KOG1123 RNA polymerase II tran 68.7 8.4 0.00018 44.4 5.6 115 2-127 303-434 (776)
152 PF12340 DUF3638: Protein of u 68.4 28 0.0006 36.6 8.9 107 3-109 25-148 (229)
153 PRK06964 DNA polymerase III su 67.8 50 0.0011 36.7 11.4 179 1-195 1-203 (342)
154 PRK04132 replication factor C 67.2 17 0.00037 45.0 8.2 96 24-158 573-672 (846)
155 COG3421 Uncharacterized protei 65.7 6.9 0.00015 46.1 4.2 134 23-157 3-166 (812)
156 PF13191 AAA_16: AAA ATPase do 65.1 23 0.0005 34.2 7.4 53 4-56 6-63 (185)
157 cd01120 RecA-like_NTPases RecA 64.0 32 0.0007 31.9 7.9 39 20-58 2-40 (165)
158 smart00489 DEXDc3 DEAD-like he 63.6 21 0.00045 38.5 7.2 62 4-66 11-82 (289)
159 smart00488 DEXDc2 DEAD-like he 63.6 21 0.00045 38.5 7.2 62 4-66 11-82 (289)
160 PRK07003 DNA polymerase III su 62.3 1.3E+02 0.0027 37.3 13.9 69 115-193 119-188 (830)
161 smart00382 AAA ATPases associa 62.2 25 0.00055 31.0 6.6 39 19-57 4-42 (148)
162 PRK07764 DNA polymerase III su 59.9 54 0.0012 40.7 10.7 70 115-194 120-190 (824)
163 TIGR01448 recD_rel helicase, p 59.6 43 0.00092 40.9 9.7 62 4-66 326-389 (720)
164 KOG0334 RNA helicase [RNA proc 59.3 36 0.00079 42.5 8.9 133 4-138 390-538 (997)
165 PRK14962 DNA polymerase III su 59.0 2.3E+02 0.005 32.9 15.1 47 276-327 245-291 (472)
166 PF13245 AAA_19: Part of AAA d 58.2 31 0.00068 29.6 6.1 55 10-65 3-62 (76)
167 PRK05707 DNA polymerase III su 58.0 27 0.00058 38.5 7.0 162 2-194 4-176 (328)
168 KOG0926 DEAH-box RNA helicase 56.6 40 0.00086 41.3 8.3 107 5-126 260-383 (1172)
169 KOG0326 ATP-dependent RNA heli 56.0 29 0.00064 38.2 6.6 82 48-129 157-241 (459)
170 KOG0952 DNA/RNA helicase MER3/ 55.3 4.1 8.8E-05 50.5 0.1 108 18-130 944-1061(1230)
171 PRK08451 DNA polymerase III su 54.6 2.4E+02 0.0051 33.5 14.3 69 115-193 117-186 (535)
172 COG4626 Phage terminase-like p 53.9 48 0.001 39.0 8.3 147 2-158 62-227 (546)
173 KOG0343 RNA Helicase [RNA proc 53.7 1.6E+02 0.0034 35.0 12.2 164 20-222 291-460 (758)
174 TIGR02928 orc1/cdc6 family rep 53.3 65 0.0014 35.1 9.2 21 19-39 42-62 (365)
175 PF00580 UvrD-helicase: UvrD/R 53.3 27 0.00058 36.7 5.9 57 6-65 5-65 (315)
176 TIGR00376 DNA helicase, putati 52.6 38 0.00083 40.7 7.7 64 4-67 160-223 (637)
177 COG1197 Mfd Transcription-repa 52.4 1.5E+02 0.0033 38.0 12.7 142 19-180 617-769 (1139)
178 PF05729 NACHT: NACHT domain 52.3 1.2E+02 0.0025 28.4 9.7 70 119-194 85-161 (166)
179 PRK13889 conjugal transfer rel 51.7 80 0.0017 40.0 10.4 60 5-64 350-409 (988)
180 PRK10536 hypothetical protein; 51.6 2.5E+02 0.0054 30.2 12.7 163 5-180 63-243 (262)
181 TIGR01407 dinG_rel DnaQ family 51.5 36 0.00079 42.2 7.5 57 4-61 248-308 (850)
182 KOG0327 Translation initiation 51.0 38 0.00082 38.0 6.6 151 6-157 53-211 (397)
183 KOG1802 RNA helicase nonsense 50.6 35 0.00076 40.9 6.6 62 5-67 414-476 (935)
184 TIGR00767 rho transcription te 50.4 32 0.0007 39.1 6.2 103 17-134 168-274 (415)
185 TIGR03015 pepcterm_ATPase puta 49.4 43 0.00094 34.7 6.7 23 20-42 46-68 (269)
186 PF12846 AAA_10: AAA-like doma 48.0 22 0.00047 37.1 4.2 62 113-175 218-281 (304)
187 KOG1015 Transcription regulato 47.4 71 0.0015 40.0 8.5 134 20-158 699-861 (1567)
188 PRK10875 recD exonuclease V su 46.6 1.1E+02 0.0023 36.8 10.1 63 3-66 154-220 (615)
189 KOG0341 DEAD-box protein abstr 44.9 60 0.0013 36.7 6.9 148 18-172 208-377 (610)
190 PRK04537 ATP-dependent RNA hel 43.7 1.4E+02 0.003 35.5 10.4 82 47-139 259-345 (572)
191 PRK12608 transcription termina 43.5 45 0.00098 37.6 5.9 101 16-131 132-236 (380)
192 PRK04296 thymidine kinase; Pro 42.3 1.3E+02 0.0028 30.1 8.6 33 21-53 5-38 (190)
193 KOG4439 RNA polymerase II tran 41.4 61 0.0013 39.2 6.7 151 3-158 327-503 (901)
194 PRK04841 transcriptional regul 41.3 66 0.0014 39.6 7.6 115 19-146 34-152 (903)
195 PRK08903 DnaA regulatory inact 41.3 1.2E+02 0.0025 30.9 8.3 26 116-142 91-116 (227)
196 TIGR03420 DnaA_homol_Hda DnaA 41.1 2E+02 0.0043 28.9 9.9 36 19-54 40-75 (226)
197 PRK08727 hypothetical protein; 40.9 1.3E+02 0.0028 31.2 8.6 35 19-53 42-77 (233)
198 TIGR00604 rad3 DNA repair heli 40.6 63 0.0014 39.2 7.1 64 4-67 13-82 (705)
199 PLN03142 Probable chromatin-re 40.6 45 0.00098 42.3 5.9 61 643-706 559-623 (1033)
200 PLN03025 replication factor C 40.2 2E+02 0.0043 31.2 10.3 37 19-55 36-74 (319)
201 cd00079 HELICc Helicase superf 40.0 2E+02 0.0043 25.6 8.8 88 30-124 13-105 (131)
202 PRK04837 ATP-dependent RNA hel 39.6 1.3E+02 0.0029 33.7 9.1 75 53-138 263-342 (423)
203 PRK14949 DNA polymerase III su 39.4 1.8E+02 0.0039 36.6 10.5 70 115-194 119-189 (944)
204 PHA03333 putative ATPase subun 39.2 82 0.0018 38.3 7.4 42 19-60 189-231 (752)
205 cd00079 HELICc Helicase superf 39.1 44 0.00095 29.9 4.3 24 416-439 27-50 (131)
206 KOG0991 Replication factor C, 38.5 39 0.00083 36.0 4.1 120 19-179 50-173 (333)
207 COG3973 Superfamily I DNA and 37.1 1.2E+02 0.0026 36.3 8.2 120 19-183 226-353 (747)
208 PRK12323 DNA polymerase III su 37.1 1.7E+02 0.0036 35.7 9.5 67 116-192 125-192 (700)
209 PF05621 TniB: Bacterial TniB 36.9 64 0.0014 35.3 5.7 48 19-66 63-118 (302)
210 KOG0337 ATP-dependent RNA heli 36.5 1.1E+02 0.0024 35.1 7.5 107 19-130 60-179 (529)
211 COG2256 MGS1 ATPase related to 36.2 92 0.002 35.5 6.8 69 117-194 106-174 (436)
212 cd00984 DnaB_C DnaB helicase C 35.8 1E+02 0.0022 31.4 6.9 111 19-129 15-137 (242)
213 PRK12422 chromosomal replicati 35.7 2E+02 0.0043 33.1 9.8 36 19-54 142-178 (445)
214 COG1202 Superfamily II helicas 35.5 52 0.0011 39.0 4.9 206 43-283 10-259 (830)
215 PRK13826 Dtr system oriT relax 35.4 1.8E+02 0.0038 37.5 9.9 62 5-66 385-446 (1102)
216 PRK11192 ATP-dependent RNA hel 35.4 2.3E+02 0.005 31.9 10.2 84 45-139 245-333 (434)
217 TIGR00580 mfd transcription-re 34.9 1.1E+02 0.0025 38.5 8.1 107 45-158 660-772 (926)
218 PF02562 PhoH: PhoH-like prote 34.6 53 0.0011 33.9 4.4 155 4-172 7-177 (205)
219 PRK14960 DNA polymerase III su 34.4 1.4E+02 0.003 36.4 8.3 68 116-193 119-187 (702)
220 PRK05703 flhF flagellar biosyn 34.4 2.8E+02 0.0061 31.7 10.6 38 19-56 223-262 (424)
221 PRK11634 ATP-dependent RNA hel 34.2 5.6E+02 0.012 30.9 13.5 110 33-155 235-351 (629)
222 PRK12723 flagellar biosynthesi 34.1 2.4E+02 0.0052 32.0 9.9 37 19-55 176-216 (388)
223 PTZ00110 helicase; Provisional 34.1 3.3E+02 0.007 32.1 11.4 84 45-139 377-465 (545)
224 KOG0387 Transcription-coupled 33.8 89 0.0019 38.4 6.5 75 27-101 528-608 (923)
225 PRK07994 DNA polymerase III su 33.4 2.2E+02 0.0048 34.5 9.9 70 115-194 119-189 (647)
226 PRK12898 secA preprotein trans 33.3 59 0.0013 39.2 5.1 42 379-439 454-495 (656)
227 PRK07471 DNA polymerase III su 33.2 95 0.0021 34.8 6.5 80 106-194 132-211 (365)
228 TIGR03158 cas3_cyano CRISPR-as 33.1 80 0.0017 35.0 5.9 43 382-438 251-293 (357)
229 cd06259 YdcF-like YdcF-like. Y 32.8 1.8E+02 0.004 27.4 7.6 50 19-68 1-63 (150)
230 KOG0332 ATP-dependent RNA heli 32.5 69 0.0015 36.1 5.0 99 26-129 138-246 (477)
231 PRK04195 replication factor C 31.0 1.7E+02 0.0036 33.9 8.2 127 19-194 41-171 (482)
232 cd01124 KaiC KaiC is a circadi 30.7 54 0.0012 31.9 3.6 42 20-61 2-43 (187)
233 PF13173 AAA_14: AAA domain 30.6 2.2E+02 0.0047 26.3 7.6 37 21-58 6-42 (128)
234 cd01410 SIRT7 SIRT7: Eukaryoti 29.9 1.1E+02 0.0024 31.3 5.9 46 8-56 148-193 (206)
235 COG0470 HolB ATPase involved i 29.8 1.9E+02 0.0042 30.6 8.0 57 113-173 107-163 (325)
236 PRK07246 bifunctional ATP-depe 29.2 1.3E+02 0.0028 37.5 7.2 55 6-61 250-307 (820)
237 PRK08084 DNA replication initi 29.2 2.1E+02 0.0045 29.7 7.8 35 19-53 46-81 (235)
238 PRK11776 ATP-dependent RNA hel 29.2 71 0.0015 36.4 4.8 37 382-439 228-264 (460)
239 PRK10416 signal recognition pa 28.6 3.7E+02 0.008 29.5 10.0 35 21-55 118-152 (318)
240 KOG0390 DNA repair protein, SN 28.3 85 0.0018 38.6 5.3 57 638-695 662-722 (776)
241 PRK06995 flhF flagellar biosyn 27.6 6E+02 0.013 29.8 11.9 36 21-56 260-297 (484)
242 TIGR00603 rad25 DNA repair hel 27.5 3.3E+02 0.0071 33.6 10.0 96 32-141 483-583 (732)
243 PRK09376 rho transcription ter 27.4 1.1E+02 0.0025 34.8 5.8 103 16-133 168-274 (416)
244 cd01128 rho_factor Transcripti 27.2 1.5E+02 0.0033 31.3 6.5 103 16-133 15-121 (249)
245 TIGR01587 cas3_core CRISPR-ass 27.1 1E+02 0.0022 33.5 5.4 39 381-439 206-244 (358)
246 PF02863 Arg_repressor_C: Argi 26.8 62 0.0013 27.4 2.8 25 415-439 45-69 (70)
247 TIGR00631 uvrb excinuclease AB 26.8 4.3E+02 0.0094 32.1 10.9 107 43-154 440-551 (655)
248 TIGR02760 TraI_TIGR conjugativ 26.7 8.4E+02 0.018 33.7 14.5 157 5-180 433-591 (1960)
249 PRK14088 dnaA chromosomal repl 26.1 4.7E+02 0.01 30.0 10.6 38 19-56 131-171 (440)
250 PRK06646 DNA polymerase III su 26.0 1.1E+02 0.0023 30.3 4.7 44 375-437 6-49 (154)
251 TIGR00362 DnaA chromosomal rep 25.5 3.6E+02 0.0078 30.2 9.5 39 19-57 137-178 (405)
252 PRK10689 transcription-repair 25.1 2.4E+02 0.0052 36.6 8.7 107 45-159 809-922 (1147)
253 PRK14958 DNA polymerase III su 24.8 2.2E+02 0.0047 33.4 7.8 69 115-193 119-188 (509)
254 PRK06526 transposase; Provisio 24.5 3.3E+02 0.0071 28.8 8.4 37 17-53 98-134 (254)
255 cd08808 CARD_CARD11_CARMA1 Cas 24.1 77 0.0017 28.3 2.9 39 272-314 46-84 (86)
256 PF04364 DNA_pol3_chi: DNA pol 24.0 96 0.0021 29.7 3.9 43 376-437 7-49 (137)
257 PRK13833 conjugal transfer pro 24.0 1.9E+02 0.0041 32.0 6.7 50 3-52 130-181 (323)
258 PRK11889 flhF flagellar biosyn 23.7 4.8E+02 0.01 30.1 9.8 43 21-63 245-290 (436)
259 COG0714 MoxR-like ATPases [Gen 23.7 6.3E+02 0.014 27.4 10.7 134 18-182 44-189 (329)
260 PRK12906 secA preprotein trans 23.6 1.1E+02 0.0024 37.9 5.1 40 381-439 423-462 (796)
261 KOG0345 ATP-dependent RNA heli 23.4 2.4E+02 0.0052 32.9 7.3 85 44-140 256-346 (567)
262 PRK14969 DNA polymerase III su 23.4 3E+02 0.0066 32.4 8.6 69 115-193 119-188 (527)
263 TIGR02881 spore_V_K stage V sp 23.4 5.2E+02 0.011 27.0 9.7 21 19-39 44-64 (261)
264 cd00296 SIR2 SIR2 superfamily 23.3 1.2E+02 0.0027 30.8 4.8 48 6-56 160-207 (222)
265 PRK14086 dnaA chromosomal repl 23.3 5.6E+02 0.012 31.0 10.7 42 19-60 315-359 (617)
266 PF10627 CsgE: Curli assembly 23.2 5E+02 0.011 24.1 8.2 89 116-232 2-91 (107)
267 PRK14959 DNA polymerase III su 23.2 3.2E+02 0.007 33.0 8.8 69 115-193 119-188 (624)
268 KOG1805 DNA replication helica 23.0 3.1E+02 0.0066 34.8 8.5 118 5-128 673-809 (1100)
269 PRK12904 preprotein translocas 22.8 1.2E+02 0.0025 37.8 5.1 42 379-439 411-452 (830)
270 PRK05728 DNA polymerase III su 22.6 1.3E+02 0.0028 29.1 4.5 43 376-437 7-49 (142)
271 PRK01297 ATP-dependent RNA hel 22.5 1.1E+02 0.0024 35.1 4.7 23 416-438 334-356 (475)
272 PRK11747 dinG ATP-dependent DN 22.5 87 0.0019 38.1 4.1 44 90-133 218-264 (697)
273 cd06184 flavohem_like_fad_nad_ 22.3 1.8E+02 0.004 29.8 5.9 47 19-65 114-162 (247)
274 PTZ00112 origin recognition co 22.3 1.4E+03 0.031 29.4 13.9 28 114-142 868-895 (1164)
275 PRK05298 excinuclease ABC subu 22.2 8.4E+02 0.018 29.5 12.2 107 44-155 445-556 (652)
276 cd08806 CARD_CARD14_CARMA2 Cas 22.1 1.2E+02 0.0027 27.0 3.8 35 276-314 50-84 (86)
277 smart00489 DEXDc3 DEAD-like he 22.1 63 0.0014 34.8 2.5 46 88-134 208-255 (289)
278 smart00488 DEXDc2 DEAD-like he 22.1 63 0.0014 34.8 2.5 46 88-134 208-255 (289)
279 cd01130 VirB11-like_ATPase Typ 21.9 2.4E+02 0.0051 28.0 6.4 47 4-50 12-58 (186)
280 PRK06893 DNA replication initi 21.7 2.9E+02 0.0064 28.4 7.3 20 21-40 43-62 (229)
281 PLN00206 DEAD-box ATP-dependen 21.7 7.3E+02 0.016 29.0 11.3 81 49-139 371-456 (518)
282 PRK06090 DNA polymerase III su 21.7 1.1E+03 0.023 26.0 12.0 81 105-194 98-178 (319)
283 cd08809 CARD_CARD9 Caspase act 21.6 89 0.0019 27.9 2.8 39 271-313 45-83 (86)
284 PRK12900 secA preprotein trans 21.4 1.3E+02 0.0028 38.0 5.2 41 380-439 580-620 (1025)
285 PRK14952 DNA polymerase III su 21.4 8.3E+02 0.018 29.3 11.7 70 115-194 118-188 (584)
286 PRK13894 conjugal transfer ATP 21.3 2.3E+02 0.005 31.1 6.7 52 4-55 135-188 (319)
287 KOG0349 Putative DEAD-box RNA 21.1 1.6E+02 0.0034 34.0 5.2 125 17-142 250-390 (725)
288 KOG0923 mRNA splicing factor A 20.9 5.3E+02 0.012 31.6 9.6 112 5-129 269-392 (902)
289 TIGR00963 secA preprotein tran 20.7 1.4E+02 0.003 36.8 5.1 23 417-439 405-427 (745)
290 PRK12402 replication factor C 20.4 1E+03 0.023 25.2 13.3 46 10-55 27-76 (337)
291 PRK08691 DNA polymerase III su 20.3 3.1E+02 0.0068 33.6 7.9 69 115-193 119-188 (709)
292 COG1199 DinG Rad3-related DNA 20.1 2.6E+02 0.0057 33.4 7.4 59 4-63 18-81 (654)
No 1
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-124 Score=1053.94 Aligned_cols=596 Identities=43% Similarity=0.683 Sum_probs=477.9
Q ss_pred chHHHHHHHHHHhcCCCCe-EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCC
Q 005084 2 VLEFHQHIIAELLQEPNGG-LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADL 80 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~-LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~ 80 (715)
+|+||++++.+++.. || |+|||.|||+.+|+++++++|+++++|||+||+.+.+.++|...++. ..++.++.++
T Consensus 14 lL~Ye~qv~~~ll~~--d~~L~V~a~GLsl~~l~~~~l~~~s~~~sL~LvLN~~~~ee~~f~s~lk~---~~~t~~~s~l 88 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEA--DGNLLVLAPGLSLLRLVAELLILFSPPGSLVLVLNTQEAEEEYFSSKLKE---PLVTEDPSEL 88 (892)
T ss_pred cchhHHHHHHhhhcc--cCceEEecCCcCHHHHHHHHHHHhCCccceEEEecCchhhHHHHHHhcCc---CCCccChhhc
Confidence 499999999999955 55 99999999999999999999999999999999999999988877765 4688888899
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccc
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV 160 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~ 160 (715)
+.++|+..|..|||||+|||||++|||+|+||++.|+||+|++||++.++|+++||+|+||++|++||||||||+|++|+
T Consensus 89 s~~~R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~knk~gfIkAFsd~P~sf~ 168 (892)
T KOG0442|consen 89 SVNKRRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYRSKNKTGFIKAFSDSPESFV 168 (892)
T ss_pred chhhhHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHHHhcCCcceeccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcc
Q 005084 161 SGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDL 239 (715)
Q Consensus 161 ~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~-ld~~~~ 239 (715)
+||+++++.|++|++++|+||||||+.|..+|++.+++|+|++|+||+.|.+||.+|++||+.|++||+++|+ +|+++|
T Consensus 169 ~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~~~kVvei~V~~s~~~~~iQ~~lleii~~clrel~r~n~~~~~ee~ 248 (892)
T KOG0442|consen 169 SGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQLPPKVVEINVSMSNSMSQIQSHLLEIIKKCLRELKRLNPELDMEEV 248 (892)
T ss_pred ccchHHHHHHHHHHhhhheeccchHhHHhhhhccCCCceEEEEeecCccHHHHHHHHHHHHHHHHHHHHhhCcccchhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred chhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccc---CCCccccchhH
Q 005084 240 TVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSES---FRSVWIFAESS 316 (715)
Q Consensus 240 t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~---~~S~Wl~~~aa 316 (715)
+++++++++|++++++||+|+||+++++|||||+||++||+||.+|.+||||+||++++++++++. .+|+|+++++|
T Consensus 249 ~~E~~~~~sf~~i~~~~Ld~~wh~ls~ktkqlv~Dl~~LR~Ll~~L~~~D~vsfl~~l~tlr~~~~~~s~~s~Wl~ldss 328 (892)
T KOG0442|consen 249 NVENILDKSFDKILRSQLDPIWHQLSTKTKQLVNDLKTLRILLKSLVSYDAVSFLKILKTLRNSEIVSSIPSGWLLLDSS 328 (892)
T ss_pred chhhcccccHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhhhccCCCCceecchH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 35699999999
Q ss_pred HHHHHHHHHHhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCCCchhhhhhhcccCCcHHHHHHHH-HHHH
Q 005084 317 YKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVL-EEIE 395 (715)
Q Consensus 317 ~~lf~~Ak~Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEe~PKW~~L~eiL-~eI~ 395 (715)
+.||+.|+.|||... -++.+|++|||++|.+|| +||.
T Consensus 329 ~~i~~~a~~rv~~~~------------------------------------------~e~~lE~~pKw~~Ltdil~~e~~ 366 (892)
T KOG0442|consen 329 NKIFEEARKRVYSLE------------------------------------------NESELEECPKWEVLTDILFKEIE 366 (892)
T ss_pred HHHHHHHHHHHhhcc------------------------------------------cccccccCCCcHHHHHHHHhhhh
Confidence 999999999999621 267899999999999999 8888
Q ss_pred HHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhhhhhccccccCCCCC
Q 005084 396 EERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRNGSEKVMREEWEKYLLSKVQLRSVQTSSKKKKSKEPK 475 (715)
Q Consensus 396 ~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~~~~~~m~~~~r~yl~~k~~~~~~~~~~~~~~~~~~~ 475 (715)
++...... .+.+|.|||+|+|++||.||++||+.|+++||.+. ++|++..-...+.+....++. ..+
T Consensus 367 ~~~~~~~~----------~~~~~~Vlv~c~dertC~ql~d~lt~g~~~~~~~~-~~~~~~~~~~~kl~~~~~k~d-~~~- 433 (892)
T KOG0442|consen 367 HEKERADR----------SNDQGSVLVACSDERTCAQLRDYLTLGINKVLLMT-RQYLLKDDKSEKLVEVLQKRD-STP- 433 (892)
T ss_pred hHHHHhhh----------cCCCCceEEEeccchhHHHHHHHHhccchhhhhhH-HHhhccCchhhhhhhhhhchh-hcc-
Confidence 77655322 27789999999999999999999999999999888 888865443333333332211 000
Q ss_pred CCCcCCCCcccccccccccccchhhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 005084 476 GYGILDGVAPVKIAQNAEASSVSKQEHDALLAAASKIRNQGKSDDGDNPETYYGSKGPGRGRGKGRNRNGPACVPQSANK 555 (715)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~krrr~rg~~~~~~~~~~~~~~~~~~~ 555 (715)
.....+|....++++++.. +...+-.+|..++++...+ ++.. ..- +-..++...+ ..+
T Consensus 434 ----~~~~~sv~~~~~kE~~~~~-~~~~~~~sa~~k~r~~~e~----sG~~-~~~-----------~~~~~~~~~~-~~~ 491 (892)
T KOG0442|consen 434 ----SVSPVSVHVEKNKEQVSTV-QRTLAGSSALEKVRGEAEE----SGNN-SDE-----------RYQTNATQFG-ESQ 491 (892)
T ss_pred ----ccccCCCcchhhhhhhhhc-ccCcccHHHHHHHhcchhh----ccCC-ccc-----------hhhhcccccc-ccc
Confidence 0122233333444433221 1111222244444421100 0000 000 0000000000 000
Q ss_pred cccccccccccCcccccCCCCCCCCccccccccccCCCccchhhhHHHHHhhhcccccccccCCCCCCCcEEe--ecCCC
Q 005084 556 DSKSNSKAAIEDKPEISGSGNEGPADEIHSGVVGYSGGMLETAFVEKEVQWKRSLKTDTAESKDSKPVPPVHF--YALES 633 (715)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--y~~~~ 633 (715)
. ..-+.+. ......++..+...+..+++... ...+ ..+.+ |++
T Consensus 492 ~--~~~~~~~--------------------~~~~~~e~~~e~~~v~k~~~~~~---~~~~--------~~~~~~~y~l-- 536 (892)
T KOG0442|consen 492 P--KELKIAK--------------------TDNSTLEPMEETPEVNKDAKTSE---HQLY--------NSVDTYSYAL-- 536 (892)
T ss_pred h--hhhcccc--------------------ccccccCccccchhhhhhhhhcc---cccc--------ceechhhhhH--
Confidence 0 0000000 00000001111111222221111 0111 12333 445
Q ss_pred ChhhhhhcCCCeEEEecCCchhhhhhhhhhccCCCCceeEEEEEecchhHHHHHHHHHHHHHhHHHHHHhcccccccccc
Q 005084 634 DQPILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKSFMMIPID 713 (715)
Q Consensus 634 d~~~L~el~P~~IImYdpd~~FIR~iEvY~A~~p~~~lrVYFm~Y~~SvEEQ~yL~~irrEK~AFe~LIreKa~M~ip~~ 713 (715)
.++|++++|+|||||+||+.||||||||+|+||..++|||||||++|+|||+||++|||||+|||+|||||++|+||.+
T Consensus 537 -~~~L~~~kP~yvi~y~~~~~~vRqiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre~ssm~ip~e 615 (892)
T KOG0442|consen 537 -ERVLEELKPRYVIMYESDLTFVRQIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIREKSSLRIPLE 615 (892)
T ss_pred -HHHHHhhCCceEEEEcCCCCceeeeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhhccceeeeee
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 005084 714 QV 715 (715)
Q Consensus 714 q~ 715 (715)
+|
T Consensus 616 ~d 617 (892)
T KOG0442|consen 616 QD 617 (892)
T ss_pred cc
Confidence 86
No 2
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=100.00 E-value=7.6e-121 Score=1067.78 Aligned_cols=523 Identities=37% Similarity=0.590 Sum_probs=415.9
Q ss_pred HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcc
Q 005084 85 RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFA 164 (715)
Q Consensus 85 R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~ 164 (715)
|+++|.+|||||+|||||+||||+|+||+++|+|||||||||++++|+|+||+|+||++|++||||||||+||+|++||+
T Consensus 1 R~~ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~ 80 (814)
T TIGR00596 1 REKVYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFS 80 (814)
T ss_pred ChhHhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcCC-CCCCccchhh
Q 005084 165 KTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNK-VDVEDLTVEN 243 (715)
Q Consensus 165 ~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~-ld~~~~t~e~ 243 (715)
+|+++|+||||++|+||||||++|++||++++++|+||+|+||++|++||.+|++||+.||+|||++|+ +|+++|+++|
T Consensus 81 ~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n~~ld~~dl~~en 160 (814)
T TIGR00596 81 PLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKNPELDMEDWNLEN 160 (814)
T ss_pred HHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHhHHhh
Confidence 999999999999999999999999999998889999999999999999999999999999999999999 8999999999
Q ss_pred ccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-Hhc------ccCCCccccchhH
Q 005084 244 GLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTL-RVS------ESFRSVWIFAESS 316 (715)
Q Consensus 244 ~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l-~~~------~~~~S~Wl~~~aa 316 (715)
+++++|+.+||+||+|+||+++++|||||+||++||||+++|++|||++||+||+++ +.+ +++.|||+|++||
T Consensus 161 ~l~~~F~~~i~~qL~~~wh~~~~~tkqlv~Dl~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~S~Wl~~daa 240 (814)
T TIGR00596 161 ALTKSFDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSESPWLLLDAA 240 (814)
T ss_pred hhhhhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccCCcchhhHHH
Confidence 999999999999999999999999999999999999999999999999999999965 643 2358999999999
Q ss_pred HHHHHHHHHHhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCCCchhhhhhhcccCCcHHHHHHHHHHHHH
Q 005084 317 YKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEE 396 (715)
Q Consensus 317 ~~lf~~Ak~Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEe~PKW~~L~eiL~eI~~ 396 (715)
++||++||.|||..... .+...+++|||||||++|.+||+||.+
T Consensus 241 ~~lf~~ak~Rvy~~~~~------------------------------------~~~~~e~~lEe~PKw~~L~eiL~eI~~ 284 (814)
T TIGR00596 241 QLIFSYARQRVYYEGEG------------------------------------PNMKNEPVLEENPKWEVLTDVLKEISH 284 (814)
T ss_pred HHHHHHHHHHHhccccc------------------------------------cccccccCcccCCCHHHHHHHHHHHHh
Confidence 99999999999951100 011157899999999999999999998
Q ss_pred HHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHhhhhhhhccccccC
Q 005084 397 ERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN-----GSEKVMREEWEKYLLSKVQLRSVQTSSKKKKS 471 (715)
Q Consensus 397 e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~-----~~~~~m~~~~r~yl~~k~~~~~~~~~~~~~~~ 471 (715)
+..+.. ...++++|||||+|++||.||++||+. |+.++|+++|+.|+.||.+..++.+.....
T Consensus 285 ~~~~~~----------~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~~~~~~~-- 352 (814)
T TIGR00596 285 EMRMTN----------RLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLAKEVQSQ-- 352 (814)
T ss_pred HHhhhc----------ccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhhHhhhhc--
Confidence 853311 125678999999999999999999998 889999999999999998877665443311
Q ss_pred CCCCCCCcCCCCcccccccccccccchhhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC
Q 005084 472 KEPKGYGILDGVAPVKIAQNAEASSVSKQEHDALLAAASKIRNQGKSDDGDNPETYYGSKGPGRGRGKG---RNRNGPAC 548 (715)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~krrr~rg~~~~---~~~~~~~~ 548 (715)
...++ .+..+++ +++ ..+.+++||||+||.... +.+.+...
T Consensus 353 ~~~~~----~~~~~~~-------------------------~~~-------~~~~~~~krrr~rG~s~~~~~~~r~~~~~ 396 (814)
T TIGR00596 353 DTFPE----NASSNVN-------------------------KTF-------RKEQVPTKRRRVRGGSEVAVEKLRNANTN 396 (814)
T ss_pred ccccc----ccccccc-------------------------ccc-------ccccccccccccccchhHHHhhhcccccc
Confidence 00000 0000010 000 224678999999874311 11111100
Q ss_pred CCCCccccccccccccccCcccccCCCCCCCCccccccccccCCCccchhhhHHHHHhhhccccccc--ccCCCCCCCcE
Q 005084 549 VPQSANKDSKSNSKAAIEDKPEISGSGNEGPADEIHSGVVGYSGGMLETAFVEKEVQWKRSLKTDTA--ESKDSKPVPPV 626 (715)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i 626 (715)
...........+.... +.......+ ++...+ ..++.....+. . .+.++ +.. ..+.++|
T Consensus 397 -~~~~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~----~~~~~~~~~~e-~-----------~d~~~~~~~~-~~~~~~i 456 (814)
T TIGR00596 397 -DMQHFEEDHELEEEGD-DLEDGPAQE-INAAND----SKIFEIIDEEN-D-----------IDIYSGAEFD-NLPQHIT 456 (814)
T ss_pred -cccccchhhhhhhhhh-hhccccccc-cccccc----ccccccccccc-c-----------cccchhhccc-cccceee
Confidence 0000000000000000 000000000 000000 00000000000 0 00011 212 2456789
Q ss_pred EeecCCCCh----hhhhhcCCCeEEEecCCchhhhhhhhhhccCCCCceeEEEEEecchhHHHHHHHHHHHHHhHHHHHH
Q 005084 627 HFYALESDQ----PILDILKPFVIVVYHPDMSFVRQIEVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLI 702 (715)
Q Consensus 627 ~~y~~~~d~----~~L~el~P~~IImYdpd~~FIR~iEvY~A~~p~~~lrVYFm~Y~~SvEEQ~yL~~irrEK~AFe~LI 702 (715)
++|.++.|+ ++|+|++|+||||||||++|||+||||||+||+.|+|||||||++|+|||+||++|||||+|||+||
T Consensus 457 ~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LI 536 (814)
T TIGR00596 457 HFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRPLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLI 536 (814)
T ss_pred eecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCCcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccc
Q 005084 703 RQKSFMMIP 711 (715)
Q Consensus 703 reKa~M~ip 711 (715)
|||++|++|
T Consensus 537 reka~m~~~ 545 (814)
T TIGR00596 537 REKANMSIP 545 (814)
T ss_pred HHHhhcCCC
Confidence 999999999
No 3
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-63 Score=543.08 Aligned_cols=364 Identities=17% Similarity=0.222 Sum_probs=307.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCCeeecC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLPSEITA 78 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~~~itg 78 (715)
.||++|++++|.+ |||||||||||||.|++.++. .+...++.||+|+||+|++.| +...+.. +...+.++||
T Consensus 18 ~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~~ltG 94 (542)
T COG1111 18 LYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGI-PEDEIAALTG 94 (542)
T ss_pred HHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCC-ChhheeeecC
Confidence 6999999999999 999999999999966666665 333334588888888888755 3444443 3357889999
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
+++|++|..+|..+.|||+|||++.|||++|+|++++|++||||||||++|+|+|+||++.|-..|++++|+|+||||||
T Consensus 95 ev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs 174 (542)
T COG1111 95 EVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS 174 (542)
T ss_pred CCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 005084 159 MVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNKVDVED 238 (715)
Q Consensus 159 f~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~ld~~~ 238 (715)
+.+++++||+||||++|+++++.++||++|+ ++.+|+||+|+||++|+.|.+.|-++++..|+-|+..|.++...
T Consensus 175 ---~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv--~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 175 ---DLEKIQEVVENLGIEKVEVRTEEDPDVRPYV--KKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred ---CHHHHHHHHHhCCcceEEEecCCCccHHHhh--ccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 8999999999999999999999999999999 77899999999999999999999999999999999999866543
Q ss_pred -cchhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccchhHH
Q 005084 239 -LTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAESSY 317 (715)
Q Consensus 239 -~t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~~aa~ 317 (715)
++..+++. +. .++-++.+.-.+..|+...+++.+.+|.|++++|++||..+||+||+.+...... ..+++|.
T Consensus 250 ~~~~kdl~~--~~-~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~----~~sk~a~ 322 (542)
T COG1111 250 PVSKKDLLE--LR-QIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK----GGSKAAK 322 (542)
T ss_pred cccHhHHHH--HH-HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc----cchHHHH
Confidence 77777766 43 3444444444677888999999999999999999999999999999999876642 2456777
Q ss_pred HHHHHHHHHhc-cccccCcccccCCCcccccccccccccCCCCCCCCCCCCCCchhhhhhhcccCCcHHHHHHHHHHHHH
Q 005084 318 KIFDYAKKRVY-RFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEE 396 (715)
Q Consensus 318 ~lf~~Ak~Rvy-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEe~PKW~~L~eiL~eI~~ 396 (715)
.|+..-..+-+ ..... +....-+|||.+.|.+||+|..+
T Consensus 323 ~l~~d~~~~~al~~~~~----------------------------------------~~~~~v~HPKl~~l~eilke~~~ 362 (542)
T COG1111 323 SLLADPYFKRALRLLIR----------------------------------------ADESGVEHPKLEKLREILKEQLE 362 (542)
T ss_pred HHhcChhhHHHHHHHHH----------------------------------------hccccCCCccHHHHHHHHHHHHh
Confidence 77653221111 00000 12234589999999999999875
Q ss_pred HHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 397 ERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 397 e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
. +++++||||+++|+|+..|.+||..
T Consensus 363 k-----------------~~~~RvIVFT~yRdTae~i~~~L~~ 388 (542)
T COG1111 363 K-----------------NGDSRVIVFTEYRDTAEEIVNFLKK 388 (542)
T ss_pred c-----------------CCCceEEEEehhHhHHHHHHHHHHh
Confidence 5 5668999999999999999999965
No 4
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.7e-61 Score=572.74 Aligned_cols=364 Identities=18% Similarity=0.251 Sum_probs=319.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHH----hCCCCCCCCeee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHY----LAPNAPLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~----L~~~~~~~~~~i 76 (715)
+.+||++++..++.+ |+|||+|||+|||.++..++. ....+++.||++.|+.++..|..+. +.. ....+..+
T Consensus 16 ~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~ 92 (773)
T PRK13766 16 ARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNI-PEEKIVVF 92 (773)
T ss_pred ccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCC-CCceEEEE
Confidence 357999999999998 999999999999965444444 2245678999999998888654433 332 11246789
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
+|++++.+|.++|.+++|+|+||+++.+|++++++++.++++|||||||++++++.++||++.|+..++.|||+||||+|
T Consensus 93 ~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP 172 (773)
T PRK13766 93 TGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASP 172 (773)
T ss_pred eCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 005084 157 TAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNKVDV 236 (715)
Q Consensus 157 ~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~ld~ 236 (715)
++ .++++.++|+||+++++++||+||++|.+|+ ++++|.|+.|+||+.|..|+.+|.++++.|+++|++.|....
T Consensus 173 ~~---~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~--~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~ 247 (773)
T PRK13766 173 GS---DEEKIKEVCENLGIEHVEVRTEDDPDVKPYV--HKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVS 247 (773)
T ss_pred CC---CHHHHHHHHHhCCceEEEEcCCCChhHHhhh--ccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 97 6899999999999999999999999999999 578999999999999999999999999999999999987543
Q ss_pred C--ccchhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccch
Q 005084 237 E--DLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAE 314 (715)
Q Consensus 237 ~--~~t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~~ 314 (715)
. +++..+++. ....++.++++.|| .+++++++++++.+|++++.+|++||+++|+.|+++++......++ ++
T Consensus 248 ~~~~~~~~~l~~--~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~---~~ 321 (773)
T PRK13766 248 ISPDVSKKELLG--LQKKLQQEIANDDS-EGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG---SK 321 (773)
T ss_pred CCCCcCHHHHHH--HHHHHHHHhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC---cH
Confidence 2 356666554 55789999999999 9999999999999999999999999999999999999987654444 89
Q ss_pred hHHHHHHHHHH-HhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCCCchhhhhhhcccCCcHHHHHHHHHH
Q 005084 315 SSYKIFDYAKK-RVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEE 393 (715)
Q Consensus 315 aa~~lf~~Ak~-Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEe~PKW~~L~eiL~e 393 (715)
+++.|+..++. |+|.. .+.+.+++|||+.|.++|++
T Consensus 322 ~~~~l~~~~~~~~~~~~-------------------------------------------~~~~~~~~pK~~~L~~il~~ 358 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRK-------------------------------------------AKELDIEHPKLEKLREIVKE 358 (773)
T ss_pred HHHHHHhCHHHHHHHHH-------------------------------------------HHhcccCChHHHHHHHHHHH
Confidence 99999998876 66631 45678999999999999999
Q ss_pred HHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 394 IEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 394 I~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
+.++ .++++|||||++++||.+|.++|..
T Consensus 359 ~~~~-----------------~~~~kvlIF~~~~~t~~~L~~~L~~ 387 (773)
T PRK13766 359 QLGK-----------------NPDSRIIVFTQYRDTAEKIVDLLEK 387 (773)
T ss_pred HHhc-----------------CCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 8754 4568999999999999999999843
No 5
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.8e-35 Score=335.36 Aligned_cols=361 Identities=16% Similarity=0.236 Sum_probs=272.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH---SPSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y---~~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~i 76 (715)
+-.||.+|+.-+|.+ |+||+||||+|||+|+|+++.-| .|.+++||++|+.|.+.||+ ++.+... .......
T Consensus 63 lR~YQ~eivq~ALgk--Ntii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~-a~~~~~~~~~~~T~~l 139 (746)
T KOG0354|consen 63 LRNYQEELVQPALGK--NTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQI-ACFSIYLIPYSVTGQL 139 (746)
T ss_pred ccHHHHHHhHHhhcC--CeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHH-HHHhhccCcccceeec
Confidence 457999999999966 99999999999999999999844 35567777777777778888 7776532 2234455
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCC-CCeeEEEEecccccCCCChHHHHHHHHHhcCcCc-cEEeecC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPT-SNLAGLIILNTHALTENSTETFICRIIKSLNREA-YIRAFSD 154 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~-~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~g-fIkAfSd 154 (715)
+|++++..|..+|....|||+|||||.|||.+|.++. ++|++||||||||++++|.|+-|.|-|...+..| .|+|+||
T Consensus 140 ~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTA 219 (746)
T KOG0354|consen 140 GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTA 219 (746)
T ss_pred cCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEec
Confidence 5668899999999999999999999999999999999 9999999999999999999999999888887777 8999999
Q ss_pred CCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005084 155 KPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNKV 234 (715)
Q Consensus 155 sP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~l 234 (715)
|||+ ..+.++.++.+|.++ +..|..-.. +.+|.+. .+++-+.|++.-.+..+++-+..+++..+..|...+..
T Consensus 220 SpG~---~~~~v~~~I~~L~as-ldvr~~ssi-~~~y~~l--r~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 220 SPGS---KLEQVQNVIDNLCAS-LDVRTESSI-KSNYEEL--REHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred CCCc---cHHHHHHHHHhhhee-cccchhhhh-hhhHHHH--hccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9996 889999999999999 999998888 8888744 45666677899999999999999999999999866543
Q ss_pred CCCccchhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcccC-CCccc
Q 005084 235 DVEDLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAV--TYLKYLDTLRVSESF-RSVWI 311 (715)
Q Consensus 235 d~~~~t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~v--sF~~yLe~l~~~~~~-~S~Wl 311 (715)
.+.+.+. ....+....+....|.|..- .+..++-+..+.|-+.+|..+++- .||.|++.-...... ++.|+
T Consensus 293 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~---q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~ 366 (746)
T KOG0354|consen 293 EISDKST---SYEQWVVQAEKAAAPNGPEN---QRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKL 366 (746)
T ss_pred ccccccc---cccchhhhhhhhhccCCCcc---chhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHH
Confidence 2222111 11101111111223333221 122377777788888888888877 455555554433221 23455
Q ss_pred cchh-HHHHHHHHHHHhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCCCchhhhhhhc-ccCCcHHHHHH
Q 005084 312 FAES-SYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVL-EEAPKWKVLRE 389 (715)
Q Consensus 312 ~~~a-a~~lf~~Ak~Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-Ee~PKW~~L~e 389 (715)
.+++ -...|..+..-+... .... -+|||.+.|.+
T Consensus 367 ~~e~~~~~~~~~~m~~~~~l--------------------------------------------~~~~~~~npkle~l~~ 402 (746)
T KOG0354|consen 367 ELEARLIRNFTENMNELEHL--------------------------------------------SLDPPKENPKLEKLVE 402 (746)
T ss_pred HhcchhhHHHHHHHHhhhhh--------------------------------------------hcCCCccChhHHHHHH
Confidence 4433 344555554433221 1111 48999999999
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 390 VLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 390 iL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
+|.|+-+. +++.++||||.+|.++.-|..+|..
T Consensus 403 ~l~e~f~~-----------------~~dsR~IIFve~R~sa~~l~~~l~~ 435 (746)
T KOG0354|consen 403 ILVEQFEQ-----------------NPDSRTIIFVETRESALALKKWLLQ 435 (746)
T ss_pred HHHHHhhc-----------------CCCccEEEEEehHHHHHHHHHHHHh
Confidence 99997642 6789999999999999999999974
No 6
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.37 E-value=2.2e-11 Score=121.67 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=130.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHH-HH-HhcC---CCCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASV-LL-LHSP---SQGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~l-l~-~y~~---~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+.+||++.+..++. ++|.|++.|||-|||.+++.. +. ++.. .+..|+++.|+..+..|+.+.+... ....+
T Consensus 22 ~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 35799999999887 469999999999999653322 22 4432 4567888889998888765544221 12245
Q ss_pred eeecCCCChhhHHHhhc-CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEee
Q 005084 74 SEITADLPANHRHTLYS-SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~-~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAf 152 (715)
..++|+.+..++...|. +..|++.||..|...+.++...+.++..+||||||.+.+......+..+++.-++.+.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLF 180 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEE
Confidence 67888888777777787 78999999999999999999999999999999999988666677777778777888999999
Q ss_pred cCCCcccccCcchHHHHHHHhccCeeE
Q 005084 153 SDKPTAMVSGFAKTERIMKSLFIRKLH 179 (715)
Q Consensus 153 SdsP~sf~~g~~~l~~vmk~L~I~~v~ 179 (715)
||+|.. .+...++...-+.++
T Consensus 181 SAT~~~------~~~~~~~~~~~~~~~ 201 (203)
T cd00268 181 SATMPK------EVRDLARKFLRNPVR 201 (203)
T ss_pred eccCCH------HHHHHHHHHCCCCEE
Confidence 999983 355555554334443
No 7
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.10 E-value=2.9e-09 Score=102.96 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCC-C---CCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNA-P---LLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~-~---~~~~~ 75 (715)
+-++|.+++..++...++.++..|+|.|||..++.++. .+. .....++++.|+.....++...+.... . .....
T Consensus 9 ~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (201)
T smart00487 9 LRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGL 88 (201)
T ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 45899999999887313999999999999975665555 332 224678888888877765544333211 1 12333
Q ss_pred ecCCCChhhHHHhhcCC-CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecC
Q 005084 76 ITADLPANHRHTLYSSG-QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 76 itge~~~~~R~~lY~~g-gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSd 154 (715)
+.+......-..+...+ +|++.|+..+...+-.+++....+..||+||||.+.+......+..+++..++..++.++|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 89 YGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred eCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEec
Confidence 44443344444455555 99999999999999999989999999999999999984444555666666677889999999
Q ss_pred CCcccccCcchHHHHHHHhccCeeEeccCC
Q 005084 155 KPTAMVSGFAKTERIMKSLFIRKLHLWPRF 184 (715)
Q Consensus 155 sP~sf~~g~~~l~~vmk~L~I~~v~l~PRf 184 (715)
+|... +......++-..+++.+.+
T Consensus 169 T~~~~------~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 169 TPPEE------IENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CCchh------HHHHHHHhcCCCEEEeCCc
Confidence 99742 4455555555666776655
No 8
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.10 E-value=1.6e-09 Score=104.34 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeecC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEITA 78 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~itg 78 (715)
++|.+++..++.+ .|.|++.|||-|||.++...+. ++......++++-|+..+.++..+.+... ....+..++|
T Consensus 2 ~~Q~~~~~~i~~~-~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISG-KNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred HHHHHHHHHHHcC-CCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999853 5899999999999976664443 44433458888888888887654444221 1224667788
Q ss_pred CCChh--hHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEeecC
Q 005084 79 DLPAN--HRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAFSD 154 (715)
Q Consensus 79 e~~~~--~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSd 154 (715)
+.+.. .+..+.....|++.||..|..-+-.+.+....++.|||||||..........+..+.+.. .+++.+.++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 87754 333444579999999999987777777788889999999999998853333344443333 22477999999
Q ss_pred CCcc
Q 005084 155 KPTA 158 (715)
Q Consensus 155 sP~s 158 (715)
+|.+
T Consensus 161 T~~~ 164 (169)
T PF00270_consen 161 TLPS 164 (169)
T ss_dssp SSTH
T ss_pred CCCh
Confidence 9984
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.07 E-value=4.4e-09 Score=117.98 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hhc-----CCCCEEEEecCCHhHHHHHHHHhCC---CCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHS-----PSQGTLLLLSSSPNLKSQIIHYLAP---NAP 70 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~-----~~~~lVlvl~~t~~~~~~i~~~L~~---~~~ 70 (715)
+.++|.+.+..++.. .|.|++.|||-|||.. +.+-. +.. ..+..+|++.|+..++.|+.+.+.. ...
T Consensus 24 p~~iQ~~ai~~~~~g-~d~l~~apTGsGKT~~-~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~ 101 (434)
T PRK11192 24 PTAIQAEAIPPALDG-RDVLGSAPTGTGKTAA-FLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTH 101 (434)
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH-HHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCC
Confidence 357999999998875 5999999999999943 32221 211 2246799999999988776543321 112
Q ss_pred CCCeeecCCCChhhHHHhhcCC-CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 71 LLPSEITADLPANHRHTLYSSG-QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 71 ~~~~~itge~~~~~R~~lY~~g-gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
..+..++|.+....+...+..+ .|+++||..|..-+..+.+++..|..|||||||++.+..-...+.++.........+
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~ 181 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 181 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEE
Confidence 3567889998888888777665 599999999988888899999999999999999998866556666666555555668
Q ss_pred EeecCCCcccccCcchHHHHHHHhccCeeE
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSLFIRKLH 179 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L~I~~v~ 179 (715)
.+||+++.. ..+..+++.+.-..+.
T Consensus 182 ~~~SAT~~~-----~~~~~~~~~~~~~~~~ 206 (434)
T PRK11192 182 LLFSATLEG-----DAVQDFAERLLNDPVE 206 (434)
T ss_pred EEEEeecCH-----HHHHHHHHHHccCCEE
Confidence 899999863 3356666666544443
No 10
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.07 E-value=7.4e-10 Score=107.49 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=101.1
Q ss_pred chHHHHHHHHHHhc------CCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCC---
Q 005084 2 VLEFHQHIIAELLQ------EPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPL--- 71 (715)
Q Consensus 2 lL~YQ~~I~~~~l~------~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~--- 71 (715)
|.+||.+++..++. +...+|+.+|||-|||.+++.++. ++. .++++.|+..+..|+.+.+......
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~~~ 79 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEKYN 79 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTSEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhhhh
Confidence 67999999999873 134899999999999988887666 544 5555667777777766555110000
Q ss_pred ------------CCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCC-----------CCCCCeeEEEEecccccC
Q 005084 72 ------------LPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQR-----------LPTSNLAGLIILNTHALT 128 (715)
Q Consensus 72 ------------~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r-----------i~~~~ItgiVV~~AHr~~ 128 (715)
......................++++|.+-|..+.-.+. ........|||||||+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~ 159 (184)
T PF04851_consen 80 FFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYP 159 (184)
T ss_dssp EEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTH
T ss_pred hcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcC
Confidence 011112222234455667789999999999998875422 233466799999999999
Q ss_pred CCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 129 ENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 129 ~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
++..+..|.+ .+.+++++|||+|.
T Consensus 160 ~~~~~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 160 SDSSYREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp HHHHHHHHHH-----SSCCEEEEEESS-S
T ss_pred CHHHHHHHHc-----CCCCeEEEEEeCcc
Confidence 9887666666 77899999999995
No 11
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=1.6e-09 Score=127.58 Aligned_cols=191 Identities=10% Similarity=0.105 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHhcCC--CCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHH-HHHhCCC--CCCCCeee
Q 005084 2 VLEFHQHIIAELLQEP--NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI-IHYLAPN--APLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~--~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i-~~~L~~~--~~~~~~~i 76 (715)
|.+||++.+..++..+ .+|+||||||.|||.+...++... ++.+||+-|+..+++|. .++..-. ....+..+
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~ 332 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRF 332 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 5689999998887543 278999999999995554444322 33466666666655443 3333211 11234455
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhc--------CCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLT--------QRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs--------~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
+|+ .+...+...+|+++|.+++.++.-. ..++......||+||||++.. ..+.-|+..+ +..+
T Consensus 333 tg~----~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-~~fr~il~~l----~a~~ 403 (732)
T TIGR00603 333 TSD----AKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-AMFRRVLTIV----QAHC 403 (732)
T ss_pred ecC----cccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-HHHHHHHHhc----CcCc
Confidence 554 3334456689999999999875322 345556788999999999843 2333334333 2346
Q ss_pred EEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccH
Q 005084 149 IRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYM 210 (715)
Q Consensus 149 IkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m 210 (715)
.+|||++|.. .-.++.. +..|.=..++-++-.+..=..+| .+.+..+|.|+||+..
T Consensus 404 RLGLTATP~R---eD~~~~~-L~~LiGP~vye~~~~eLi~~G~L--A~~~~~ev~v~~t~~~ 459 (732)
T TIGR00603 404 KLGLTATLVR---EDDKITD-LNFLIGPKLYEANWMELQKKGFI--ANVQCAEVWCPMTPEF 459 (732)
T ss_pred EEEEeecCcc---cCCchhh-hhhhcCCeeeecCHHHHHhCCcc--ccceEEEEEecCCHHH
Confidence 8999999985 3334333 33332234433322222223444 5678899999999864
No 12
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.99 E-value=5.8e-09 Score=117.76 Aligned_cols=186 Identities=15% Similarity=0.181 Sum_probs=123.4
Q ss_pred chHHHHHHHHHHhcC---CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCC--CCeee
Q 005084 2 VLEFHQHIIAELLQE---PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPL--LPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~---~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~--~~~~i 76 (715)
+-+||++.+..+... .+.++||||||-|||.+.+..+...... +|+|-++..+..|..+.+...... .+..+
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~ 113 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKFLLLNDEIGIY 113 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC---EEEEECcHHHHHHHHHHHHHhcCCcccccee
Confidence 568999999998773 4599999999999996666666633221 888888888887765555432111 23344
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc-EEeecCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY-IRAFSDK 155 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf-IkAfSds 155 (715)
+|.... ... ++|.|+|-|.+...-.-...+.+....|||||||++-..+. .-|++.+. ..+ ++||||+
T Consensus 114 ~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~-~~~~~~~~----~~~~~LGLTAT 182 (442)
T COG1061 114 GGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY-RRILELLS----AAYPRLGLTAT 182 (442)
T ss_pred cCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH-HHHHHhhh----cccceeeeccC
Confidence 443211 111 89999999999986433444555899999999999876443 33455554 334 9999999
Q ss_pred CcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhcc---CCCeEEEEEecCCcc
Q 005084 156 PTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER---EPPVVVDVRVPMSKY 209 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~---~~~~V~Ei~V~lt~~ 209 (715)
|.- .+-..+..+...++ ..++=. .....++. .+....++.+.++..
T Consensus 183 p~R--~D~~~~~~l~~~~g-~~vy~~-----~~~~li~~g~Lap~~~~~i~~~~t~~ 231 (442)
T COG1061 183 PER--EDGGRIGDLFDLIG-PIVYEV-----SLKELIDEGYLAPYKYVEIKVTLTED 231 (442)
T ss_pred cee--ecCCchhHHHHhcC-CeEeec-----CHHHHHhCCCccceEEEEEEeccchH
Confidence 983 24466777777776 333322 23333331 567888888876654
No 13
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.95 E-value=3.8e-09 Score=121.03 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCC-eee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLP-SEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~-~~i 76 (715)
+-+||++.+..++.. +++++++|||.|||.+++.+...+ ....+.+|+|.|+..+..|+.+.+..-. .... .+.
T Consensus 115 ~r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~ 193 (501)
T PHA02558 115 PHWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIY 193 (501)
T ss_pred CCHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEe
Confidence 347999999998875 489999999999997666655543 2333478888888888888766654311 1112 223
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
+|... +..+-|+++|++.|.... ...++++..|||||||++.+.+- ..|++ .-.+..++.||||+|
T Consensus 194 ~g~~~-------~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~~~~-~~il~---~~~~~~~~lGLTATp 259 (501)
T PHA02558 194 SGTAK-------DTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTGKSL-TSIIT---KLDNCKFKFGLTGSL 259 (501)
T ss_pred cCccc-------CCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccchhH-HHHHH---hhhccceEEEEeccC
Confidence 33221 246889999999987532 22357899999999999987542 23333 222346799999999
Q ss_pred cc
Q 005084 157 TA 158 (715)
Q Consensus 157 ~s 158 (715)
..
T Consensus 260 ~~ 261 (501)
T PHA02558 260 RD 261 (501)
T ss_pred CC
Confidence 63
No 14
>PTZ00424 helicase 45; Provisional
Probab=98.94 E-value=9.9e-09 Score=113.40 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hh--cCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LH--SPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y--~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~ 74 (715)
+.++|.+.+..++.. +|.+++.|||-|||. ++.+.. .. ...++.+|++.|+..+..|+.+.+.... .....
T Consensus 51 ~~~~Q~~ai~~i~~~-~d~ii~apTGsGKT~-~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 128 (401)
T PTZ00424 51 PSAIQQRGIKPILDG-YDTIGQAQSGTGKTA-TFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCH 128 (401)
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHHH-HHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEE
Confidence 467899999998875 599999999999994 433322 21 2245678999999999888766553321 11233
Q ss_pred eecCCCChhhHHHhhcC-CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
...|.....+....+.+ ..|++.||..|..-+..+.+.+++|..|||||||++....-..-+.++++...+..-+.+||
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEE
Confidence 44566555444444444 48999999999888888999999999999999999987666666788888888888899999
Q ss_pred CCCc
Q 005084 154 DKPT 157 (715)
Q Consensus 154 dsP~ 157 (715)
+++.
T Consensus 209 AT~~ 212 (401)
T PTZ00424 209 ATMP 212 (401)
T ss_pred ecCC
Confidence 9975
No 15
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.94 E-value=6.3e-09 Score=128.47 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHh---c-CCCCeEEEecCCCCHHHHHHHHHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAELL---Q-EPNGGLVILSSGLSLPKLIASVLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l---~-~~~d~LvVL~tGLG~~~Iva~ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~ 75 (715)
+-+||...+..+. . ...++|||||||-|||.+++.++. +.. ...+.||+|..+..+..|..+.+..........
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~ 493 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQT 493 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccc
Confidence 4579999886654 2 234789999999999988776666 432 334678888888888877665554321111111
Q ss_pred ecCCCChh--hHHHhhcCCCEEEECchHHHHHhhcC-----CCCCCCeeEEEEecccccCC------------------C
Q 005084 76 ITADLPAN--HRHTLYSSGQIFFVTPRILIVDLLTQ-----RLPTSNLAGLIILNTHALTE------------------N 130 (715)
Q Consensus 76 itge~~~~--~R~~lY~~ggV~fvTprIL~~DLLs~-----ri~~~~ItgiVV~~AHr~~~------------------~ 130 (715)
+++-.+.. .......+++|+|+|.|.|...++.. ..+++.+.+||||||||... .
T Consensus 494 ~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~ 573 (1123)
T PRK11448 494 FASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYV 573 (1123)
T ss_pred hhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHH
Confidence 11111111 11123457999999999998887643 36788899999999999742 1
Q ss_pred ChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 131 STETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 131 ~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
+.|.-|+..| +.+..|||++|..
T Consensus 574 ~~yr~iL~yF-----dA~~IGLTATP~r 596 (1123)
T PRK11448 574 SKYRRVLDYF-----DAVKIGLTATPAL 596 (1123)
T ss_pred HHHHHHHhhc-----CccEEEEecCCcc
Confidence 2233333322 3689999999974
No 16
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=1.6e-08 Score=115.07 Aligned_cols=169 Identities=15% Similarity=0.226 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~ 81 (715)
+-++|++++..++.. +|.|+++|||-||| +++.+-.+.. ++.++|+.|+..+..+....|...+ .....++++.+
T Consensus 12 ~r~~Q~~ai~~~l~g-~dvlv~apTGsGKT-l~y~lp~l~~--~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~ 86 (470)
T TIGR00614 12 FRPVQLEVINAVLLG-RDCFVVMPTGGGKS-LCYQLPALCS--DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQS 86 (470)
T ss_pred CCHHHHHHHHHHHcC-CCEEEEcCCCCcHh-HHHHHHHHHc--CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 357999999998875 49999999999999 5555544543 4677888888887755444443322 24567888888
Q ss_pred hhhHHHhhc---C--CCEEEECchHHHHHh-hcCCC-CCCCeeEEEEecccccCCCC-----hHHHHHHHHHhcCcCccE
Q 005084 82 ANHRHTLYS---S--GQIFFVTPRILIVDL-LTQRL-PTSNLAGLIILNTHALTENS-----TETFICRIIKSLNREAYI 149 (715)
Q Consensus 82 ~~~R~~lY~---~--ggV~fvTprIL~~DL-Ls~ri-~~~~ItgiVV~~AHr~~~~~-----~eaFI~rlyr~~nk~gfI 149 (715)
..++..++. . -.++++||..+.... +...+ ....|..|||||||++.... .+..+. .++...+.-.+
T Consensus 87 ~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~-~l~~~~~~~~~ 165 (470)
T TIGR00614 87 KEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG-SLKQKFPNVPI 165 (470)
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH-HHHHHcCCCce
Confidence 887777663 2 469999999876543 23333 67899999999999987521 222222 24444456668
Q ss_pred EeecCCCcccccCcchHHHHHHHhccCeeEec
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSLFIRKLHLW 181 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~ 181 (715)
.||||+|.. .-.+.+++.|++.+..++
T Consensus 166 l~lTAT~~~-----~~~~di~~~l~l~~~~~~ 192 (470)
T TIGR00614 166 MALTATASP-----SVREDILRQLNLKNPQIF 192 (470)
T ss_pred EEEecCCCH-----HHHHHHHHHcCCCCCcEE
Confidence 999999974 335677888888765554
No 17
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.85 E-value=7.2e-08 Score=112.65 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCCh
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPA 82 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~ 82 (715)
-++|++++..++.. +|.|+++|||-||| +++.+-.+.. ++.++++.|+..+.++-.+.|...+ .....++++++.
T Consensus 15 r~~Q~~~i~~il~g-~dvlv~~PTG~GKT-l~y~lpal~~--~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~ 89 (591)
T TIGR01389 15 RPGQEEIISHVLDG-RDVLVVMPTGGGKS-LCYQVPALLL--KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSA 89 (591)
T ss_pred CHHHHHHHHHHHcC-CCEEEEcCCCccHh-HHHHHHHHHc--CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCH
Confidence 47899999998875 49999999999999 5554444433 4566777777777654333443322 246678899988
Q ss_pred hhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC---C--hHHHHHHHHHhcCcCccEEee
Q 005084 83 NHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN---S--TETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 83 ~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~---~--~eaFI~rlyr~~nk~gfIkAf 152 (715)
.++..++. .-.++++||.-|..+...+.+...+|+.|||||||.+..- . .|.-+..+.......+ |.||
T Consensus 90 ~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~-vi~l 168 (591)
T TIGR01389 90 KEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVP-RIAL 168 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCC-EEEE
Confidence 88887764 4579999999998888888888899999999999998641 1 2333444433332333 8899
Q ss_pred cCCCcccccCcchHHHHHHHhccCe
Q 005084 153 SDKPTAMVSGFAKTERIMKSLFIRK 177 (715)
Q Consensus 153 SdsP~sf~~g~~~l~~vmk~L~I~~ 177 (715)
||++..- -.+.+.+.|++..
T Consensus 169 TAT~~~~-----~~~~i~~~l~~~~ 188 (591)
T TIGR01389 169 TATADAE-----TRQDIRELLRLAD 188 (591)
T ss_pred EeCCCHH-----HHHHHHHHcCCCC
Confidence 9998752 2445677777764
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.81 E-value=1.8e-07 Score=107.77 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHH--HHHHHHh--------cCCCCEEEEecCCHhHHHHHHHHhCCCCC-
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLI--ASVLLLH--------SPSQGTLLLLSSSPNLKSQIIHYLAPNAP- 70 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iv--a~ll~~y--------~~~~~lVlvl~~t~~~~~~i~~~L~~~~~- 70 (715)
+-++|.+.+..++.. +|.+++.|||-|||.+. ..+.++. ...+..+|++.|+..+..|+.+.+.....
T Consensus 144 ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~ 222 (518)
T PLN00206 144 PTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKG 222 (518)
T ss_pred CCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 357899999998864 59999999999999322 2222221 11356899999999998887655432111
Q ss_pred ---CCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCc
Q 005084 71 ---LLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREA 147 (715)
Q Consensus 71 ---~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~g 147 (715)
.....++|+....++..++...-|++.||..|..=|..+.+.++.|..|||||||++.+..-+.-+.++++.-. ..
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~ 301 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QP 301 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CC
Confidence 12334566666777778887778999999999776777889999999999999999988665666667776553 45
Q ss_pred cEEeecCCCcccccCcchHHHHHHHhcc
Q 005084 148 YIRAFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 148 fIkAfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
-+.+|||+... .++.+.+.+.-
T Consensus 302 q~l~~SATl~~------~v~~l~~~~~~ 323 (518)
T PLN00206 302 QVLLFSATVSP------EVEKFASSLAK 323 (518)
T ss_pred cEEEEEeeCCH------HHHHHHHHhCC
Confidence 68899999763 35555555443
No 19
>PTZ00110 helicase; Provisional
Probab=98.81 E-value=1e-07 Score=110.52 Aligned_cols=155 Identities=13% Similarity=0.106 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHH--HHHHHHHhc------CCCCEEEEecCCHhHHHHHHHHhCCCC---C
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKL--IASVLLLHS------PSQGTLLLLSSSPNLKSQIIHYLAPNA---P 70 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~I--va~ll~~y~------~~~~lVlvl~~t~~~~~~i~~~L~~~~---~ 70 (715)
+-+.|.+.+.-++.. +|.+++.+||-|||.. +..+.++.. ..+..+|+|.||..++.|+.+.+.... .
T Consensus 153 pt~iQ~~aip~~l~G-~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~ 231 (545)
T PTZ00110 153 PTPIQVQGWPIALSG-RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK 231 (545)
T ss_pred CCHHHHHHHHHHhcC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC
Confidence 357899999888875 5999999999999943 223333221 235689999999999988776654311 1
Q ss_pred CCCeeecCCCC-hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 71 LLPSEITADLP-ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 71 ~~~~~itge~~-~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
.....+.|..+ ..++..+-....|+++||..|..-|..+.+.+..|+.|||||||++.+..-+..+.+++..-.+..-+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~ 311 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 311 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeE
Confidence 12344555554 34566676677899999999987777788999999999999999999877677777787777777788
Q ss_pred EeecCCCc
Q 005084 150 RAFSDKPT 157 (715)
Q Consensus 150 kAfSdsP~ 157 (715)
..|||+..
T Consensus 312 l~~SAT~p 319 (545)
T PTZ00110 312 LMWSATWP 319 (545)
T ss_pred EEEEeCCC
Confidence 99999964
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.76 E-value=2.5e-07 Score=104.92 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcC-------CCCEEEEecCCHhHHHHHHHHhCCC---CC
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSP-------SQGTLLLLSSSPNLKSQIIHYLAPN---AP 70 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~-------~~~lVlvl~~t~~~~~~i~~~L~~~---~~ 70 (715)
-++|++.+..++.. .|.|++.|||-|||.+...-+. +... ....+|++.|+..+..|+.+.+... ..
T Consensus 25 t~iQ~~ai~~il~g-~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 25 TPIQQQAIPAVLEG-RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 47899999998875 5999999999999944332221 2111 1236899999999987776554321 11
Q ss_pred CCCeeecCCCChhhH-HHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 71 LLPSEITADLPANHR-HTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 71 ~~~~~itge~~~~~R-~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
.....++|.++.++. ..+...--|+++||..|..-+..+.+.++.|..|||||||++....-..-+.+++..-....-+
T Consensus 104 ~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~ 183 (456)
T PRK10590 104 IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQN 183 (456)
T ss_pred CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeE
Confidence 234456777765443 3455556799999999987777888999999999999999998866555566666655555568
Q ss_pred EeecCCCc
Q 005084 150 RAFSDKPT 157 (715)
Q Consensus 150 kAfSdsP~ 157 (715)
.+|||++.
T Consensus 184 l~~SAT~~ 191 (456)
T PRK10590 184 LLFSATFS 191 (456)
T ss_pred EEEeCCCc
Confidence 89999976
No 21
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.75 E-value=1.3e-07 Score=86.06 Aligned_cols=138 Identities=19% Similarity=0.206 Sum_probs=100.0
Q ss_pred CeEEEecCCCCHHHHHHHHHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeeecCCCChhh-HHHhhcCCC
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEITADLPANH-RHTLYSSGQ 93 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~itge~~~~~-R~~lY~~gg 93 (715)
+.++..|+|.|||.++..++. .+. .....++++.|+....++..+.+.... ......++++..... .........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKTD 81 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCCC
Confidence 789999999999988887777 332 245677778888888777655543321 133455555543322 233456899
Q ss_pred EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 94 IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 94 V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
|++.|+..+...+.........+..+||||||.+.....................+.++|++|
T Consensus 82 i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 82 IVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999999999998887788889999999999988776665333444456678899999998
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.73 E-value=2.4e-07 Score=104.98 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=113.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcC-CCCEEEEecCCHhHHHHHHHHhCCC----CCCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSP-SQGTLLLLSSSPNLKSQIIHYLAPN----APLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~-~~~lVlvl~~t~~~~~~i~~~L~~~----~~~~~~ 74 (715)
+-++|.+.+..++.. +|.+++.|||-|||.+...-+. +... .+..+|++.||..+..|+.+.+... ....+.
T Consensus 27 ~t~iQ~~ai~~~l~g-~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~ 105 (460)
T PRK11776 27 MTPIQAQSLPAILAG-KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (460)
T ss_pred CCHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 347899999998875 5999999999999943222222 2222 2346788889999888876554321 112355
Q ss_pred eecCCCChhh-HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADLPANH-RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~~~~~-R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
.++|.++... ...+.....|+++||..|..=+..+.+.+.++..||+||||++.+..-..-+.+++..-.+..-+..||
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~S 185 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFS 185 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEE
Confidence 6778877644 445555568999999999877777899999999999999999987665566667777666666789999
Q ss_pred CCCcc
Q 005084 154 DKPTA 158 (715)
Q Consensus 154 dsP~s 158 (715)
|++..
T Consensus 186 AT~~~ 190 (460)
T PRK11776 186 ATYPE 190 (460)
T ss_pred ecCcH
Confidence 99863
No 23
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.68 E-value=3.1e-07 Score=107.78 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~ 81 (715)
+.++|++++..++.. +|.||++|||-||| +++.+-.+.. ++.++|+.|+..+..+..+.+...+ .....+++..+
T Consensus 26 ~r~~Q~~ai~~il~g-~dvlv~apTGsGKT-l~y~lpal~~--~g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~ 100 (607)
T PRK11057 26 FRPGQQEIIDAVLSG-RDCLVVMPTGGGKS-LCYQIPALVL--DGLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQT 100 (607)
T ss_pred CCHHHHHHHHHHHcC-CCEEEEcCCCchHH-HHHHHHHHHc--CCCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCC
Confidence 357999999998875 59999999999999 5555544443 4567888888877765544554322 23456677777
Q ss_pred hhhHHHhhc---CC--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC-----hHHHHHHHHHhcCcCccEEe
Q 005084 82 ANHRHTLYS---SG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS-----TETFICRIIKSLNREAYIRA 151 (715)
Q Consensus 82 ~~~R~~lY~---~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~-----~eaFI~rlyr~~nk~gfIkA 151 (715)
..++...|. .| .++++||.-|..+.+...+....++.|||||||.+.... .|.- +..+++..+..-+.|
T Consensus 101 ~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~-L~~l~~~~p~~~~v~ 179 (607)
T PRK11057 101 REQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAA-LGQLRQRFPTLPFMA 179 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHH-HHHHHHhCCCCcEEE
Confidence 777666653 23 588999998887666666777789999999999987521 1222 233444455566889
Q ss_pred ecCCCcccccCcchHHHHHHHhccCeeE
Q 005084 152 FSDKPTAMVSGFAKTERIMKSLFIRKLH 179 (715)
Q Consensus 152 fSdsP~sf~~g~~~l~~vmk~L~I~~v~ 179 (715)
|||++.. .....+++.|++.+-.
T Consensus 180 lTAT~~~-----~~~~di~~~l~l~~~~ 202 (607)
T PRK11057 180 LTATADD-----TTRQDIVRLLGLNDPL 202 (607)
T ss_pred EecCCCh-----hHHHHHHHHhCCCCeE
Confidence 9999875 2334677878776543
No 24
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.64 E-value=4.4e-06 Score=102.37 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHh---cCCCCeEEEecCCCCHHHHHHHHHH-Hhc--CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAELL---QEPNGGLVILSSGLSLPKLIASVLL-LHS--PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l---~~~~d~LvVL~tGLG~~~Iva~ll~-~y~--~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~ 75 (715)
|.+||..-+.-++ ..+.+|++.-.-|||||..+..++. ++. ...+-+||+.|...+.++..+.-.-++...+..
T Consensus 170 Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~ 249 (1033)
T PLN03142 170 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVK 249 (1033)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHHCCCCceEE
Confidence 6789999988765 3455899999999999965555554 432 223556777777777777665544333333445
Q ss_pred ecCCCChhhHHH----hh--cCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCcc
Q 005084 76 ITADLPANHRHT----LY--SSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAY 148 (715)
Q Consensus 76 itge~~~~~R~~----lY--~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gf 148 (715)
++|+. .+|.. .+ ..-.|+++|..++..|. ..+.--....|||||||++.. ++.-+-+++.++. .+
T Consensus 250 ~~G~~--~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a----~~ 321 (1033)
T PLN03142 250 FHGNP--EERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFST----NY 321 (1033)
T ss_pred EeCCH--HHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhc----Cc
Confidence 56543 23332 22 23468888888887763 222223456899999999977 3444555566553 34
Q ss_pred EEeecCCCcc
Q 005084 149 IRAFSDKPTA 158 (715)
Q Consensus 149 IkAfSdsP~s 158 (715)
..++|.+|-.
T Consensus 322 RLLLTGTPlq 331 (1033)
T PLN03142 322 RLLITGTPLQ 331 (1033)
T ss_pred EEEEecCCCC
Confidence 5789999975
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.61 E-value=8.3e-07 Score=99.49 Aligned_cols=156 Identities=12% Similarity=0.040 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHH--HHhc--------CCCCEEEEecCCHhHHHHHHHHhCC---C
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVL--LLHS--------PSQGTLLLLSSSPNLKSQIIHYLAP---N 68 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll--~~y~--------~~~~lVlvl~~t~~~~~~i~~~L~~---~ 68 (715)
+-+.|.+.+..++.. +|.+++.|||-|||.+...-+ ++.. ..+..+|+|.|+..++.|+.+.+.. .
T Consensus 31 pt~iQ~~aip~il~g-~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~ 109 (423)
T PRK04837 31 CTPIQALALPLTLAG-RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQA 109 (423)
T ss_pred CCHHHHHHHHHHhCC-CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhcc
Confidence 357899999988875 599999999999994332111 1211 1245799999999998876543321 1
Q ss_pred CCCCCeeecCCCChhhHHHhhcC-CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcC--c
Q 005084 69 APLLPSEITADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN--R 145 (715)
Q Consensus 69 ~~~~~~~itge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n--k 145 (715)
....+..+.|..+.......... --|++.||..|..-+..+.++++.|..+||||||++.+..-..-+..+++.-. +
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~ 189 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN 189 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc
Confidence 11234455666655444444443 47999999999877778999999999999999999977554444455555443 2
Q ss_pred CccEEeecCCCcc
Q 005084 146 EAYIRAFSDKPTA 158 (715)
Q Consensus 146 ~gfIkAfSdsP~s 158 (715)
......|||+...
T Consensus 190 ~~~~~l~SAT~~~ 202 (423)
T PRK04837 190 QRLNMLFSATLSY 202 (423)
T ss_pred ceeEEEEeccCCH
Confidence 3346788998763
No 26
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.59 E-value=4.1e-07 Score=108.14 Aligned_cols=147 Identities=15% Similarity=0.150 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHhcCC-----CCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEP-----NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~-----~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
|-++|+..+.+++.+. .|.|++.+||-|||.+++.-+...-..|..++++.||..++.|+.+.+... ....+
T Consensus 262 lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v 341 (681)
T PRK10917 262 LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRV 341 (681)
T ss_pred CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEE
Confidence 3478999999987652 267999999999994443333322234778999999999988765544321 11246
Q ss_pred eeecCCCChhhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 74 SEITADLPANHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
..++|+++.++|.+.+. +--|++.||..+ ...+...++..+||||||+. +.. + -..++..+..+-
T Consensus 342 ~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~v~~~~l~lvVIDE~Hrf-g~~---q-r~~l~~~~~~~~ 411 (681)
T PRK10917 342 ALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDDVEFHNLGLVIIDEQHRF-GVE---Q-RLALREKGENPH 411 (681)
T ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----cccchhcccceEEEechhhh-hHH---H-HHHHHhcCCCCC
Confidence 78999999988887765 347889998655 44567889999999999996 222 2 223445555678
Q ss_pred EEeecCCCcc
Q 005084 149 IRAFSDKPTA 158 (715)
Q Consensus 149 IkAfSdsP~s 158 (715)
+++|||+|..
T Consensus 412 iL~~SATp~p 421 (681)
T PRK10917 412 VLVMTATPIP 421 (681)
T ss_pred EEEEeCCCCH
Confidence 9999999964
No 27
>PRK01172 ski2-like helicase; Provisional
Probab=98.58 E-value=7.2e-07 Score=105.88 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC--CCCCCeeecC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN--APLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~--~~~~~~~itg 78 (715)
+.++|.+.+..++.+ +|.+|+.|||-|||.++...+. .... ++.++++.|+..++.+.-+.+... ....+...+|
T Consensus 23 l~~~Q~~ai~~l~~~-~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G 100 (674)
T PRK01172 23 LYDHQRMAIEQLRKG-ENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIG 100 (674)
T ss_pred CCHHHHHHHHHHhcC-CcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 458999999987654 5999999999999954433322 2222 455666667777776544333211 0123556778
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC---hHHHHHHHHHhcCcCccEEeecCC
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS---TETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
+.....+ ......|+++||.-+..=+.++...+.+|..|||||||.+.+.. ....++..++..++...|.++|++
T Consensus 101 ~~~~~~~--~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSAT 178 (674)
T PRK01172 101 DYDDPPD--FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSAT 178 (674)
T ss_pred CCCCChh--hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCc
Confidence 8654332 23567999999987654444555567899999999999986432 334455666666777889999999
Q ss_pred CcccccCcchHHHHHHHhccC
Q 005084 156 PTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L~I~ 176 (715)
+.. ...+.+-|+..
T Consensus 179 l~n-------~~~la~wl~~~ 192 (674)
T PRK01172 179 VSN-------ANELAQWLNAS 192 (674)
T ss_pred cCC-------HHHHHHHhCCC
Confidence 863 33444555544
No 28
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.57 E-value=1.2e-06 Score=106.93 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hhc-------CCCCEEEEecCCHhHHHHHHHHhC-----
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHS-------PSQGTLLLLSSSPNLKSQIIHYLA----- 66 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~-------~~~~lVlvl~~t~~~~~~i~~~L~----- 66 (715)
+-++|.+.+..++.. +|.||+.|||=|||. ++.+-. +.. +.+..++++.|+..+..++...|.
T Consensus 33 ~tpiQ~~Ai~~il~g-~nvli~APTGSGKTl-aa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 33 FTPPQRYAIPLIHEG-KNVLISSPTGSGKTL-AAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCHHHHHHHHHHHcC-CCEEEECCCCCcHHH-HHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 457899999987764 599999999999994 443322 221 224568888899988765432211
Q ss_pred ---------CC-CCCCCeeecCCCChhhHHHhhc-CCCEEEECchHHHHHhhcC-CC--CCCCeeEEEEecccccCCCC-
Q 005084 67 ---------PN-APLLPSEITADLPANHRHTLYS-SGQIFFVTPRILIVDLLTQ-RL--PTSNLAGLIILNTHALTENS- 131 (715)
Q Consensus 67 ---------~~-~~~~~~~itge~~~~~R~~lY~-~ggV~fvTprIL~~DLLs~-ri--~~~~ItgiVV~~AHr~~~~~- 131 (715)
.. +...+.+.+|+++..+|.++.. ...|++.||..|. +++.. .. .+..+..|||||||.+.++.
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~-~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~R 189 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLA-ILLNSPKFREKLRTVKWVIVDEIHSLAENKR 189 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHH-HHhcChhHHHHHhcCCEEEEechhhhccCcc
Confidence 10 0123567899999888776655 5689999999985 55543 22 36789999999999998643
Q ss_pred ---hHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 132 ---TETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 132 ---~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
-+..+-|+.+-..+..-+.||||+.+.
T Consensus 190 G~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 190 GVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 233333443333345667899999873
No 29
>PRK02362 ski2-like helicase; Provisional
Probab=98.57 E-value=5.4e-07 Score=108.06 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeeecC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHS-PSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~itg 78 (715)
+.++|.+.+...+..++|.|++.|||=||| ++|.+..+.. .+++.++++.|+..+..+.-+.+.... ...+..+||
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKT-lia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tG 102 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKT-LIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTG 102 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHH-HHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 457899999885555669999999999999 4554332111 246678888888888766544433211 124567899
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC---hHHHHHHHHHhcCcCccEEeecCC
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS---TETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
+..... +...+..|+++||.-+..=+-.+..-+.+|..|||||||.+.... ....++...+..++...|.||||+
T Consensus 103 d~~~~~--~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSAT 180 (737)
T PRK02362 103 DYDSRD--EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSAT 180 (737)
T ss_pred CcCccc--cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEccc
Confidence 876543 334568899999987643233333446889999999999986422 334455556666677889999999
Q ss_pred Cc
Q 005084 156 PT 157 (715)
Q Consensus 156 P~ 157 (715)
..
T Consensus 181 l~ 182 (737)
T PRK02362 181 IG 182 (737)
T ss_pred CC
Confidence 86
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.56 E-value=2.1e-06 Score=101.18 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCC----CCCCCCee
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAP----NAPLLPSE 75 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~----~~~~~~~~ 75 (715)
-++|.+.+..++.. +|.|++.|||-|||.+.+.-+. +.. ..+..||+|.|+..+..|+.+.+.. .....+..
T Consensus 30 tpiQ~~ai~~ll~g-~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~ 108 (629)
T PRK11634 30 SPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 (629)
T ss_pred CHHHHHHHHHHHcC-CCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 47999999998865 5999999999999954332222 222 2345788999999888887555432 11123445
Q ss_pred ecCCCChhhHHHhhc-CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecC
Q 005084 76 ITADLPANHRHTLYS-SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 76 itge~~~~~R~~lY~-~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSd 154 (715)
+.|..+......... ...|++.||.-|.--|..+.++++.|..||+||||.+....-..-|..+...-.+..-+..||+
T Consensus 109 ~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSA 188 (629)
T PRK11634 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 (629)
T ss_pred EECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEc
Confidence 666666554443333 4579999999998888889999999999999999998765544445555555555566788999
Q ss_pred CCc
Q 005084 155 KPT 157 (715)
Q Consensus 155 sP~ 157 (715)
+..
T Consensus 189 T~p 191 (629)
T PRK11634 189 TMP 191 (629)
T ss_pred cCC
Confidence 965
No 31
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.55 E-value=2.1e-06 Score=102.07 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=116.8
Q ss_pred chHHHHHHHHHHhcC--CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCC
Q 005084 2 VLEFHQHIIAELLQE--PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITAD 79 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~--~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge 79 (715)
|-++|++.+..++.. .++.|+..+||=|||.+...++...-..|+.||++-|+..+..|+.+.+.......+.+++|.
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~ 224 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSG 224 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 457999999998862 348999999999999777666552223367788999999888777666643212357789999
Q ss_pred CChhhHHHhhcC-----CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChH-----HHHHHHHHhcCcCccE
Q 005084 80 LPANHRHTLYSS-----GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE-----TFICRIIKSLNREAYI 149 (715)
Q Consensus 80 ~~~~~R~~lY~~-----ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~e-----aFI~rlyr~~nk~gfI 149 (715)
++..+|.+.|.+ ..|++.|+..+. +|+.++..|||||+|...-.... +--+-.+|.....+-+
T Consensus 225 ~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~ 297 (679)
T PRK05580 225 LSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPV 297 (679)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCE
Confidence 999999988853 468888886542 68899999999999976432211 1111244555555667
Q ss_pred EeecCCCcccccCcchHHHHHHHhccCeeEeccCCc
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQ 185 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~ 185 (715)
..+|++|.. .-...+.+. .+..+.+-.|++
T Consensus 298 il~SATps~-----~s~~~~~~g-~~~~~~l~~r~~ 327 (679)
T PRK05580 298 VLGSATPSL-----ESLANAQQG-RYRLLRLTKRAG 327 (679)
T ss_pred EEEcCCCCH-----HHHHHHhcc-ceeEEEeccccc
Confidence 777999973 223333222 356666776664
No 32
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.55 E-value=3.8e-06 Score=102.38 Aligned_cols=153 Identities=11% Similarity=0.087 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH-H-hcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecC
Q 005084 2 VLEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL-L-HSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~-~-y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itg 78 (715)
+++||..++..++.. ....|+.=-.|||||.-++.+++ + .......|||+.|+....++..+...- ....+.++.+
T Consensus 153 l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~k-F~l~~~i~~~ 231 (956)
T PRK04914 153 LIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRR-FNLRFSLFDE 231 (956)
T ss_pred CCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHH-hCCCeEEEcC
Confidence 689999999997653 23578888999999944444444 2 233345788888887777776555422 1123555554
Q ss_pred CCChh---hHHHhhcCCCEEEECchHHHHHh-hcCCCCCCCeeEEEEecccccC-----CCChHHHHHHHHHhcCcCccE
Q 005084 79 DLPAN---HRHTLYSSGQIFFVTPRILIVDL-LTQRLPTSNLAGLIILNTHALT-----ENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 79 e~~~~---~R~~lY~~ggV~fvTprIL~~DL-Ls~ri~~~~ItgiVV~~AHr~~-----~~~~eaFI~rlyr~~nk~gfI 149 (715)
+.... ....-|....++++|-..|..|- ....+.-.....+||||||++. ++..|.++..+-+ +...+
T Consensus 232 ~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~---~~~~~ 308 (956)
T PRK04914 232 ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE---VIPGV 308 (956)
T ss_pred cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh---ccCCE
Confidence 43211 11245667788888888777531 1112223467899999999997 3444666655533 34578
Q ss_pred EeecCCCcc
Q 005084 150 RAFSDKPTA 158 (715)
Q Consensus 150 kAfSdsP~s 158 (715)
+.+|++|..
T Consensus 309 LLLTATP~q 317 (956)
T PRK04914 309 LLLTATPEQ 317 (956)
T ss_pred EEEEcCccc
Confidence 889999985
No 33
>PRK00254 ski2-like helicase; Provisional
Probab=98.53 E-value=1.5e-06 Score=103.99 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCC--CCCCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPN--APLLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~--~~~~~~~it 77 (715)
+-+.|.+.+...+..+.|.||+.|||-||| +++.+.. .....++.++++.|+..++.+..+.+... ....+..+|
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT-~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~ 102 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKT-LVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTT 102 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHH-HHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 347899999874444569999999999999 4443322 22223567778888888876544333211 112466789
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
|+++...+ ...+.-|+++||.-+..-+-.+...+.+|..|||||||.+........+-.+...-.....|.|+||+.+
T Consensus 103 Gd~~~~~~--~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~ 180 (720)
T PRK00254 103 GDYDSTDE--WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG 180 (720)
T ss_pred CCCCCchh--hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC
Confidence 99865432 2345689999999886544445566789999999999998654333333333333345678999999987
Q ss_pred c
Q 005084 158 A 158 (715)
Q Consensus 158 s 158 (715)
.
T Consensus 181 n 181 (720)
T PRK00254 181 N 181 (720)
T ss_pred C
Confidence 3
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.53 E-value=1.4e-06 Score=106.12 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHH-HHHHHhCCCCCCCCeeecCCCC
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKS-QIIHYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~-~i~~~L~~~~~~~~~~itge~~ 81 (715)
-++|++++..++.. .|.||+||||=||+ +++.|-.+.. ++++||+.|+..+++ |+...... + .....+++.++
T Consensus 462 Rp~Q~eaI~aiL~G-rDVLVimPTGSGKS-LcYQLPAL~~--~GiTLVISPLiSLmqDQV~~L~~~-G-I~Aa~L~s~~s 535 (1195)
T PLN03137 462 RPNQREIINATMSG-YDVFVLMPTGGGKS-LTYQLPALIC--PGITLVISPLVSLIQDQIMNLLQA-N-IPAASLSAGME 535 (1195)
T ss_pred CHHHHHHHHHHHcC-CCEEEEcCCCccHH-HHHHHHHHHc--CCcEEEEeCHHHHHHHHHHHHHhC-C-CeEEEEECCCC
Confidence 47899999998875 59999999999999 6666655544 478999999998875 66655432 1 23566888888
Q ss_pred hhhHHHhhcC-------CCEEEECchHHH-HH----hhcCCCCCCCeeEEEEecccccCCC---ChHHHH-HHHHHhcCc
Q 005084 82 ANHRHTLYSS-------GQIFFVTPRILI-VD----LLTQRLPTSNLAGLIILNTHALTEN---STETFI-CRIIKSLNR 145 (715)
Q Consensus 82 ~~~R~~lY~~-------ggV~fvTprIL~-~D----LLs~ri~~~~ItgiVV~~AHr~~~~---~~eaFI-~rlyr~~nk 145 (715)
..++.+++.. -.|+++||--|. .| .+...-....|+.|||||||.+..- +-..|. +..+++.-+
T Consensus 536 ~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp 615 (1195)
T PLN03137 536 WAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 615 (1195)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC
Confidence 7777666543 369999997664 23 2322222456899999999998652 212221 223444444
Q ss_pred CccEEeecCCCcccccCcchHHHHHHHhccCeeEe
Q 005084 146 EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l 180 (715)
.--+.||||++.. .--+.+++.|++....+
T Consensus 616 ~vPilALTATAT~-----~V~eDI~~~L~l~~~~v 645 (1195)
T PLN03137 616 NIPVLALTATATA-----SVKEDVVQALGLVNCVV 645 (1195)
T ss_pred CCCeEEEEecCCH-----HHHHHHHHHcCCCCcEE
Confidence 4457899999864 23445778888765443
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.51 E-value=2.5e-06 Score=97.24 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---HhcCC--------CCEEEEecCCHhHHHHHHHHhCCC--
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHSPS--------QGTLLLLSSSPNLKSQIIHYLAPN-- 68 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~~--------~~lVlvl~~t~~~~~~i~~~L~~~-- 68 (715)
+-++|.+.+.-++.. +|.+++.|||-||| +++.+-. +...+ +..+|+|.|+..+.+|+.+.+...
T Consensus 110 ~~~iQ~~ai~~~~~G-~dvi~~apTGSGKT-lay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~ 187 (475)
T PRK01297 110 CTPIQAQVLGYTLAG-HDAIGRAQTGTGKT-AAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK 187 (475)
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHH-HHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc
Confidence 347899999887765 59999999999999 4443322 22221 357899999999987766544321
Q ss_pred -CCCCCeeecCCCChhhHHHhhc--CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc
Q 005084 69 -APLLPSEITADLPANHRHTLYS--SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR 145 (715)
Q Consensus 69 -~~~~~~~itge~~~~~R~~lY~--~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk 145 (715)
....+..++|+.+.....+-+. ...|++.||..|..=+-.+.+.++.+..|||||||++.+..-..-+.++.+....
T Consensus 188 ~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~ 267 (475)
T PRK01297 188 YTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR 267 (475)
T ss_pred cCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCC
Confidence 1123456677765444333333 3589999999996545567889999999999999999875433334555554432
Q ss_pred --CccEEeecCCCc
Q 005084 146 --EAYIRAFSDKPT 157 (715)
Q Consensus 146 --~gfIkAfSdsP~ 157 (715)
..-+.+||++..
T Consensus 268 ~~~~q~i~~SAT~~ 281 (475)
T PRK01297 268 KEERQTLLFSATFT 281 (475)
T ss_pred CCCceEEEEEeecC
Confidence 335788999854
No 36
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.46 E-value=1.3e-06 Score=106.35 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhcC-----CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC-C--CCCCe
Q 005084 3 LEFHQHIIAELLQE-----PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN-A--PLLPS 74 (715)
Q Consensus 3 L~YQ~~I~~~~l~~-----~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~-~--~~~~~ 74 (715)
-++|+..+..++.+ +.|.||+.+||-|||.++...+...-..+..|++|.||..+.+|+-+.+... . ...+.
T Consensus 453 T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~ 532 (926)
T TIGR00580 453 TPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIE 532 (926)
T ss_pred CHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEE
Confidence 47899999998874 2488999999999995443322211123577889999999888765443321 1 11345
Q ss_pred eecCCCChhhHHHhhc---CC--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 75 EITADLPANHRHTLYS---SG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 75 ~itge~~~~~R~~lY~---~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
.++|.++.+++.+.+. +| -|++.||++ +++.+.+.++..|||||||+. +... .+.++...+..-+
T Consensus 533 ~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l-----l~~~v~f~~L~llVIDEahrf-gv~~----~~~L~~~~~~~~v 602 (926)
T TIGR00580 533 LLSRFRSAKEQNEILKELASGKIDILIGTHKL-----LQKDVKFKDLGLLIIDEEQRF-GVKQ----KEKLKELRTSVDV 602 (926)
T ss_pred EEeccccHHHHHHHHHHHHcCCceEEEchHHH-----hhCCCCcccCCEEEeeccccc-chhH----HHHHHhcCCCCCE
Confidence 6888888877766654 34 588899964 567788999999999999995 2222 2334444556789
Q ss_pred EeecCCCcc
Q 005084 150 RAFSDKPTA 158 (715)
Q Consensus 150 kAfSdsP~s 158 (715)
.+|||+|..
T Consensus 603 L~~SATpip 611 (926)
T TIGR00580 603 LTLSATPIP 611 (926)
T ss_pred EEEecCCCH
Confidence 999999964
No 37
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.46 E-value=9.9e-07 Score=104.01 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHhcCC-----CCeEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCC
Q 005084 2 VLEFHQHIIAELLQEP-----NGGLVILSSGLSLPKLIASVLLL-HSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~-----~d~LvVL~tGLG~~~Iva~ll~~-y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~ 72 (715)
|-++|+..+.+++.+. .|.||+.+||-||| +++.+..+ ....+..++++.||..+..|+.+.+... ....
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT-~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKT-LVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHH-HHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 3468999998877641 25799999999999 44433221 1234667899999999987765444321 0124
Q ss_pred CeeecCCCChhhHHHhhc---CC--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc--
Q 005084 73 PSEITADLPANHRHTLYS---SG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR-- 145 (715)
Q Consensus 73 ~~~itge~~~~~R~~lY~---~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-- 145 (715)
+..+||+++.++|...+. +| .|++.||..+. ..+...++..+||||||+.-. .+.. .++....
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~lvVIDEaH~fg~-~qr~----~l~~~~~~~ 384 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLALVIIDEQHRFGV-EQRK----KLREKGQGG 384 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccceEEEechhhccH-HHHH----HHHHhcccC
Confidence 678999999888887774 23 79999997653 456788999999999999632 1111 2223333
Q ss_pred -CccEEeecCCCcc
Q 005084 146 -EAYIRAFSDKPTA 158 (715)
Q Consensus 146 -~gfIkAfSdsP~s 158 (715)
.+.+..|||+|..
T Consensus 385 ~~~~~l~~SATp~p 398 (630)
T TIGR00643 385 FTPHVLVMSATPIP 398 (630)
T ss_pred CCCCEEEEeCCCCc
Confidence 5679999999964
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.45 E-value=3.8e-06 Score=100.78 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---HhcCCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~i 76 (715)
+-+.|...+..++.. .|.+++.|||=||| +++.|-. +...++..+|++.|+..+..++.+.+.... ...+.++
T Consensus 37 p~~~Q~~ai~~il~G-~nvvv~apTGSGKT-la~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~ 114 (742)
T TIGR03817 37 PWQHQARAAELAHAG-RHVVVATGTASGKS-LAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATY 114 (742)
T ss_pred CCHHHHHHHHHHHCC-CCEEEECCCCCcHH-HHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEE
Confidence 457899988887764 59999999999999 4443322 334456789999999999877655443321 1235678
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCC----CCCCCeeEEEEecccccCCCC--hHHHHHHHHH----hcCcC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQR----LPTSNLAGLIILNTHALTENS--TETFICRIIK----SLNRE 146 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r----i~~~~ItgiVV~~AHr~~~~~--~eaFI~rlyr----~~nk~ 146 (715)
+|+++..+|..+.....|++.||..|...+|... .-++.+..|||||||+..+.. .-+.+++..+ .....
T Consensus 115 ~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~ 194 (742)
T TIGR03817 115 DGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGAS 194 (742)
T ss_pred eCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988876666432 126789999999999987742 2334444322 22345
Q ss_pred ccEEeecCCCcc
Q 005084 147 AYIRAFSDKPTA 158 (715)
Q Consensus 147 gfIkAfSdsP~s 158 (715)
.-+.+|||+-+.
T Consensus 195 ~q~i~~SATi~n 206 (742)
T TIGR03817 195 PVFVLASATTAD 206 (742)
T ss_pred CEEEEEecCCCC
Confidence 678889999763
No 39
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.44 E-value=4e-06 Score=100.41 Aligned_cols=187 Identities=14% Similarity=0.109 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEecCCHhHHHHHHHHhC---CCCCCCCeee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHS--PSQGTLLLLSSSPNLKSQIIHYLA---PNAPLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~--~~~~lVlvl~~t~~~~~~i~~~L~---~~~~~~~~~i 76 (715)
+++.|+..+...+.++.|.||++|||-||| +||.|..+.. ..++.++-+.|...+++..-+.++ .. ...+.+.
T Consensus 32 l~~~qq~av~~~~~~~~N~li~aPTgsGKT-lIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~-GirV~~~ 109 (766)
T COG1204 32 LFNPQQEAVEKGLLSDENVLISAPTGSGKT-LIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEEL-GIRVGIS 109 (766)
T ss_pred hhHHHHHHhhccccCCCcEEEEcCCCCchH-HHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhc-CCEEEEe
Confidence 467788888886555669999999999999 6666655321 224556666666666544333333 11 1257889
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC----CChHHHHHHHHHhcCcCccEEee
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE----NSTETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~----~~~eaFI~rlyr~~nk~gfIkAf 152 (715)
||++.... +--..-.|++.||.=+-+=+-..-.-.++|.++||||+|-+.+ ...|+-+.|..+ .|....|.|+
T Consensus 110 TgD~~~~~--~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~-~~~~~rivgL 186 (766)
T COG1204 110 TGDYDLDD--ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR-LNELIRIVGL 186 (766)
T ss_pred cCCcccch--hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh-hCcceEEEEE
Confidence 99987544 2234678999999976553444444678999999999997754 577888777665 4455789999
Q ss_pred cCCCcccccCcchHHHHHHHhccCeeE-eccCCchhhhhhhccCCCeEEEEE
Q 005084 153 SDKPTAMVSGFAKTERIMKSLFIRKLH-LWPRFQVNVSEELEREPPVVVDVR 203 (715)
Q Consensus 153 SdsP~sf~~g~~~l~~vmk~L~I~~v~-l~PRf~~~V~~~l~~~~~~V~Ei~ 203 (715)
||+-+ ++..+...+ +.+.+. .| ||++-.++.+. ...+....
T Consensus 187 SATlp----N~~evA~wL---~a~~~~~~~-rp~~l~~~v~~--~~~~~~~~ 228 (766)
T COG1204 187 SATLP----NAEEVADWL---NAKLVESDW-RPVPLRRGVPY--VGAFLGAD 228 (766)
T ss_pred eeecC----CHHHHHHHh---CCcccccCC-CCcccccCCcc--ceEEEEec
Confidence 99987 455555554 455553 44 56777777763 33444444
No 40
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.43 E-value=1.5e-06 Score=108.00 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhcC-----CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC-C--CCCCe
Q 005084 3 LEFHQHIIAELLQE-----PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN-A--PLLPS 74 (715)
Q Consensus 3 L~YQ~~I~~~~l~~-----~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~-~--~~~~~ 74 (715)
-+.|++.+..++.+ +.|.|++.+||.|||.++...+......+..|++|.||..++.|+.+.+... . ...+.
T Consensus 602 T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~ 681 (1147)
T PRK10689 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 (1147)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEE
Confidence 46799999988774 2489999999999995433222211234678999999999988765544321 1 11345
Q ss_pred eecCCCChhhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 75 EITADLPANHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 75 ~itge~~~~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
+++|..+.+++.+.+. .-.|++.||+ +|++.+++.++..+||||||+. |.. + .+.++....+.-+
T Consensus 682 ~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-----lL~~~v~~~~L~lLVIDEahrf-G~~---~-~e~lk~l~~~~qv 751 (1147)
T PRK10689 682 MLSRFRSAKEQTQILAEAAEGKIDILIGTHK-----LLQSDVKWKDLGLLIVDEEHRF-GVR---H-KERIKAMRADVDI 751 (1147)
T ss_pred EEECCCCHHHHHHHHHHHHhCCCCEEEECHH-----HHhCCCCHhhCCEEEEechhhc-chh---H-HHHHHhcCCCCcE
Confidence 6788888888887764 2369999996 4566778899999999999997 322 2 2333444556779
Q ss_pred EeecCCCcc
Q 005084 150 RAFSDKPTA 158 (715)
Q Consensus 150 kAfSdsP~s 158 (715)
++|||+|..
T Consensus 752 Ll~SATpip 760 (1147)
T PRK10689 752 LTLTATPIP 760 (1147)
T ss_pred EEEcCCCCH
Confidence 999999964
No 41
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.42 E-value=2.5e-06 Score=101.24 Aligned_cols=147 Identities=12% Similarity=0.131 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhc---------CCCCeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHHHHhCCCCCC
Q 005084 3 LEFHQHIIAELLQ---------EPNGGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQIIHYLAPNAPL 71 (715)
Q Consensus 3 L~YQ~~I~~~~l~---------~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~ 71 (715)
-.||...+..++. ..+.|||++|||-|||.+++.+.+ +. ......||++-.+..+..|+.+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 3567777766522 134799999999999977776666 33 233567887888887777766555432211
Q ss_pred CCeeecCCCChhhH-HHhh-cCCCEEEECchHHHH---HhhcCCCCC--CCeeEEEEecccccCCCChHHHHHHHHHhcC
Q 005084 72 LPSEITADLPANHR-HTLY-SSGQIFFVTPRILIV---DLLTQRLPT--SNLAGLIILNTHALTENSTETFICRIIKSLN 144 (715)
Q Consensus 72 ~~~~itge~~~~~R-~~lY-~~ggV~fvTprIL~~---DLLs~ri~~--~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n 144 (715)
.+. +-.+...- ..+- ..++|+|+|-|.|.. +.+. ..+. .++ .||||||||..... ..+..++.-
T Consensus 320 ~~~---~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~-~~~~~~~~~-lvIvDEaHrs~~~~----~~~~l~~~~ 390 (667)
T TIGR00348 320 CAE---RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEE-KFPVDRKEV-VVIFDEAHRSQYGE----LAKNLKKAL 390 (667)
T ss_pred CCc---ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh-ccCCCCCCE-EEEEEcCccccchH----HHHHHHhhC
Confidence 111 11122222 2222 247999999999975 2222 2222 223 79999999976533 234444455
Q ss_pred cCccEEeecCCCcc
Q 005084 145 REAYIRAFSDKPTA 158 (715)
Q Consensus 145 k~gfIkAfSdsP~s 158 (715)
++.+..|||++|..
T Consensus 391 p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 391 KNASFFGFTGTPIF 404 (667)
T ss_pred CCCcEEEEeCCCcc
Confidence 67899999999974
No 42
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.39 E-value=3.9e-06 Score=97.99 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc--------CCCCEEEEecCCHhHHHHHHHHhCCC---C
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS--------PSQGTLLLLSSSPNLKSQIIHYLAPN---A 69 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~--------~~~~lVlvl~~t~~~~~~i~~~L~~~---~ 69 (715)
-+-|.+.+.-++.. +|.+++.|||-|||.....-+. +.. +.+..+|++.|+..+..|+.+.+... .
T Consensus 33 tpiQ~~~ip~~l~G-~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~ 111 (572)
T PRK04537 33 TPIQALTLPVALPG-GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111 (572)
T ss_pred CHHHHHHHHHHhCC-CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 35788888887765 5999999999999943322221 211 11367999999999988775544321 1
Q ss_pred CCCCeeecCCCChhhHHHhhcCC-CEEEECchHHHHHhhcC-CCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc--
Q 005084 70 PLLPSEITADLPANHRHTLYSSG-QIFFVTPRILIVDLLTQ-RLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR-- 145 (715)
Q Consensus 70 ~~~~~~itge~~~~~R~~lY~~g-gV~fvTprIL~~DLLs~-ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-- 145 (715)
...+..++|..+..+..+++.++ -|++.||..|..-+..+ .+.+..|..|||||||++.+..-..-|..+++....
T Consensus 112 ~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~ 191 (572)
T PRK04537 112 GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG 191 (572)
T ss_pred CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc
Confidence 12356778888776666655544 59999999987555443 578999999999999999764433333333332221
Q ss_pred CccEEeecCCCcc
Q 005084 146 EAYIRAFSDKPTA 158 (715)
Q Consensus 146 ~gfIkAfSdsP~s 158 (715)
..-+..||++...
T Consensus 192 ~~q~ll~SATl~~ 204 (572)
T PRK04537 192 TRQTLLFSATLSH 204 (572)
T ss_pred CceEEEEeCCccH
Confidence 2347889998753
No 43
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.30 E-value=4.2e-05 Score=91.03 Aligned_cols=154 Identities=14% Similarity=0.220 Sum_probs=101.8
Q ss_pred chHHHHHHHHHH-hcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhC----CCCCCCCee
Q 005084 2 VLEFHQHIIAEL-LQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLA----PNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~-l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~----~~~~~~~~~ 75 (715)
|-+||.|++.-+ +.+ +.++.|+||=||| +++.+-. ++.-.+..|+|+-|++.++.+..+.+. ..+. .+..
T Consensus 69 lrpydVQlig~l~l~~--G~Iaem~TGeGKT-Lta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL-sv~~ 144 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQ--GNIAEMKTGEGKT-LTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL-TVSL 144 (762)
T ss_pred CCccHHHHHHHHHhcC--CceeEecCCcchH-HHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCC-cEEE
Confidence 468999988885 444 6899999999999 4444443 444456679999999999876554442 2111 2333
Q ss_pred ecC-----CCChhhHHHhhcCCCEEEECchHHHHHhhcCC-------CCCCCeeEEEEecccccCCCChHHHHHHHHHhc
Q 005084 76 ITA-----DLPANHRHTLYSSGQIFFVTPRILIVDLLTQR-------LPTSNLAGLIILNTHALTENSTETFICRIIKSL 143 (715)
Q Consensus 76 itg-----e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r-------i~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~ 143 (715)
+.+ +..+..|+..| ..-|++.||--|.-|+|... +....+..+||||||++.-. .
T Consensus 145 ~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD------------e 211 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD------------S 211 (762)
T ss_pred EECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc------------c
Confidence 333 35667788888 47899999999998888543 33567889999999998552 3
Q ss_pred CcCccEEeecCCCcccccCcchHHHHHHHhc
Q 005084 144 NREAYIRAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 144 nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
.+.|+|. |-.|..-+.-+....++++.|.
T Consensus 212 artplii--sg~~~~~~~~y~~~~~~v~~l~ 240 (762)
T TIGR03714 212 AQTPLVI--SGAPRVQSNLYHIADTFVRTLK 240 (762)
T ss_pred CcCCeee--eCCCccchHHHHHHHHHHHhcC
Confidence 4567664 3334322223445556666554
No 44
>PRK09401 reverse gyrase; Reviewed
Probab=98.29 E-value=7.7e-06 Score=102.13 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~it 77 (715)
+-++|+..+..++.. +|.+++.|||-|||.. +.++. .....+..++++.||..++.|+.+.+.... ...+..+.
T Consensus 81 pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f-~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~ 158 (1176)
T PRK09401 81 PWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTF-GLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILY 158 (1176)
T ss_pred CcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHH-HHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 357999999888765 5999999999999953 33333 223346789999999999888766554321 11234454
Q ss_pred CC--CChhhHHHhh-----cCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 78 AD--LPANHRHTLY-----SSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 78 ge--~~~~~R~~lY-----~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
|. ++.+++.+++ ....|++.||+-|...+ . .++...|..|||||||++..
T Consensus 159 g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~-~-~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNF-D-ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred ccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHH-H-hccccccCEEEEEChHHhhh
Confidence 44 3345555543 23589999999887544 3 67778899999999999985
No 45
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=9.6e-06 Score=93.31 Aligned_cols=152 Identities=15% Similarity=0.132 Sum_probs=98.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc-----CCCEE
Q 005084 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS-----SGQIF 95 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~-----~ggV~ 95 (715)
|+.-+||-|||.+...++...-..++-||++-|+-.+..|+.+.+.......+.++++.++..+|.+.|. +..|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 4556999999977655554222336678888899888877665554321235778999999999999996 34677
Q ss_pred EECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHH--HH---HHHHHhcCcCccEEeecCCCcccccCcchHHHHH
Q 005084 96 FVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET--FI---CRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIM 170 (715)
Q Consensus 96 fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~ea--FI---~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vm 170 (715)
+.|+..+. .|..++..|||||+|...-...+. |= +-.+|..-..+-+..+||+|.. +.+..+.
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl-----es~~~~~ 148 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL-----ESYHNAK 148 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH-----HHHHHHh
Confidence 77766552 588999999999999875322211 11 2234555455667788999973 3333333
Q ss_pred HHhccCeeEeccCCc
Q 005084 171 KSLFIRKLHLWPRFQ 185 (715)
Q Consensus 171 k~L~I~~v~l~PRf~ 185 (715)
+. .+..+.+..|++
T Consensus 149 ~g-~~~~~~l~~r~~ 162 (505)
T TIGR00595 149 QK-AYRLLVLTRRVS 162 (505)
T ss_pred cC-CeEEeechhhhc
Confidence 22 234455555554
No 46
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.17 E-value=4.4e-05 Score=95.51 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC----CCC--CCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN----APL--LPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~----~~~--~~~~ 75 (715)
+.++|+..+..++.. .|.+++.|||-|||..+..++..+...+..++++.||..++.|+.+.+... +.. .+..
T Consensus 79 p~~iQ~~~i~~il~G-~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~ 157 (1171)
T TIGR01054 79 PWSIQKMWAKRVLRG-DSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGA 157 (1171)
T ss_pred CcHHHHHHHHHHhCC-CeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeee
Confidence 457899988887765 499999999999995333222233344678999999999988865544321 101 1224
Q ss_pred ecCCCChhhHHHhhc---C--CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC
Q 005084 76 ITADLPANHRHTLYS---S--GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 76 itge~~~~~R~~lY~---~--ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
++|.++..+|.+.+. + -.|++.||.-|...+.. +.. .+..|||||||++...
T Consensus 158 ~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 158 YHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhc
Confidence 689998888766542 2 47999999988754432 333 8999999999999863
No 47
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.15 E-value=0.00011 Score=81.00 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCC-CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHH-H---HHHHhCCC---CCCCCeee
Q 005084 5 FHQHIIAELLQEPN-GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKS-Q---IIHYLAPN---APLLPSEI 76 (715)
Q Consensus 5 YQ~~I~~~~l~~~~-d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~-~---i~~~L~~~---~~~~~~~i 76 (715)
+|.+.+..+....+ +.+++.|||-||| .++.+..+.. .+. .+++.|+..+.. + +.+.+... ....+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT-~~~~~~~l~~-~~~-~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKT-LAWLTPLLHG-END-TIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHH-HHHHHHHHHc-CCC-EEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 58888988887632 2467889999999 5554433432 233 445555565543 3 33333211 11224456
Q ss_pred cCCCChh--------------------hHHHhhcCCCE-EEECchHHHHHhhcCCCC--------CCCeeEEEEeccccc
Q 005084 77 TADLPAN--------------------HRHTLYSSGQI-FFVTPRILIVDLLTQRLP--------TSNLAGLIILNTHAL 127 (715)
Q Consensus 77 tge~~~~--------------------~R~~lY~~ggV-~fvTprIL~~DLLs~ri~--------~~~ItgiVV~~AHr~ 127 (715)
+|++... -|..+..+... ++.||++|..-+...-.. ...++.|||||+|..
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 6663322 13344444555 555589997633221111 378999999999997
Q ss_pred CCCC--hHHHH---HHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHh
Q 005084 128 TENS--TETFI---CRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 128 ~~~~--~eaFI---~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
.+.. ...|. ..+++.....+.+.++||+|.. .+.+.|.+.
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~------~~~~~l~~~ 202 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP------ALILRLQNA 202 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH------HHHHHHHhc
Confidence 6522 11222 2233444445789999999974 355555554
No 48
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.10 E-value=0.00028 Score=84.75 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=91.2
Q ss_pred hHHHHHHHHHH-hcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHh----CCCCCCCCeee
Q 005084 3 LEFHQHIIAEL-LQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYL----APNAPLLPSEI 76 (715)
Q Consensus 3 L~YQ~~I~~~~-l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L----~~~~~~~~~~i 76 (715)
-+|+-|++.-+ +.. +.+..+.||=||| +++.|-. +..-.|.-|.|+.||+.++.+..+.+ ...+ ..+..+
T Consensus 78 ~p~~vQl~~~~~l~~--G~Iaem~TGeGKT-L~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i 153 (790)
T PRK09200 78 RPYDVQLIGALVLHE--GNIAEMQTGEGKT-LTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLN 153 (790)
T ss_pred CCchHHHHhHHHHcC--CceeeecCCCcch-HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEE
Confidence 46777777763 444 6699999999999 5555544 34445788999999999987754433 2211 246678
Q ss_pred cCCCC-hhhHHHhhcCCCEEEECchHHHHHhhcCCC-------CCCCeeEEEEecccccCC
Q 005084 77 TADLP-ANHRHTLYSSGQIFFVTPRILIVDLLTQRL-------PTSNLAGLIILNTHALTE 129 (715)
Q Consensus 77 tge~~-~~~R~~lY~~ggV~fvTprIL~~DLLs~ri-------~~~~ItgiVV~~AHr~~~ 129 (715)
+|+++ +.+|+..|. ..|++.||-=|.-|+|...+ -...+..+||||||++.=
T Consensus 154 ~g~~~~~~~r~~~y~-~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi 213 (790)
T PRK09200 154 FSDIDDASEKKAIYE-ADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL 213 (790)
T ss_pred eCCCCcHHHHHHhcC-CCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee
Confidence 89988 899999986 68999999999888887654 235678899999999854
No 49
>PRK14701 reverse gyrase; Provisional
Probab=98.09 E-value=3.2e-05 Score=99.06 Aligned_cols=123 Identities=8% Similarity=0.137 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhCCCC-----CCCCeee
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLAPNA-----PLLPSEI 76 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~-----~~~~~~i 76 (715)
-+.|+.++..++.. +|.++++|||-|||. ++.++.++ ...+..++++-||..++.|+.+.+.... ......+
T Consensus 81 t~iQ~~~i~~il~G-~d~li~APTGsGKTl-~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 81 WSIQKTWAKRILRG-KSFSIVAPTGMGKST-FGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CHHHHHHHHHHHcC-CCEEEEEcCCCCHHH-HHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 46899999998885 599999999999995 44444433 3346688999999999887665554311 1134567
Q ss_pred cCCCChhhHHHhhc---C--CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 77 TADLPANHRHTLYS---S--GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 77 tge~~~~~R~~lY~---~--ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
+|.++..++.+.+. + --|++.||.-|...+ .... ...|..|||||||++..
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~-~~l~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFLARNF-PEMK-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhH-HHHh-hCCCCEEEEECceeccc
Confidence 89998887766553 3 379999999665433 3322 37899999999999964
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.04 E-value=3e-05 Score=89.73 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=120.1
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH-HHHHHHhCCCCCCCCeeecCCCChhh
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK-SQIIHYLAPNAPLLPSEITADLPANH 84 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~-~~i~~~L~~~~~~~~~~itge~~~~~ 84 (715)
|.+|+..+++. +|+|||||||=||. |-..+=.+.. .|+.||+.|=-.+. .|....... + .....+++..+..+
T Consensus 22 Q~evI~~~l~g-~d~lvvmPTGgGKS-lCyQiPAll~--~G~TLVVSPLiSLM~DQV~~l~~~-G-i~A~~lnS~l~~~e 95 (590)
T COG0514 22 QQEIIDALLSG-KDTLVVMPTGGGKS-LCYQIPALLL--EGLTLVVSPLISLMKDQVDQLEAA-G-IRAAYLNSTLSREE 95 (590)
T ss_pred HHHHHHHHHcC-CcEEEEccCCCCcc-hHhhhHHHhc--CCCEEEECchHHHHHHHHHHHHHc-C-ceeehhhcccCHHH
Confidence 88999999986 59999999999999 5444433322 56999999887776 455544433 2 24556777778888
Q ss_pred HHHhhcC---C--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC---C--hHHHHHHHHHhcCcCccEEeecC
Q 005084 85 RHTLYSS---G--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN---S--TETFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 85 R~~lY~~---g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~---~--~eaFI~rlyr~~nk~gfIkAfSd 154 (715)
|..++.. | .+++++|--|.++-..+.+.--.|++++|||||-+..= . .|.-+.++-..- ++.-|.||||
T Consensus 96 ~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~-~~~p~~AlTA 174 (590)
T COG0514 96 RQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL-PNPPVLALTA 174 (590)
T ss_pred HHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC-CCCCEEEEeC
Confidence 8888764 3 68899999888887777777889999999999988762 1 455555554433 3777999988
Q ss_pred CCcccccCcchHHHHHHHhccCee
Q 005084 155 KPTAMVSGFAKTERIMKSLFIRKL 178 (715)
Q Consensus 155 sP~sf~~g~~~l~~vmk~L~I~~v 178 (715)
+.-. .-.+.++..|++..-
T Consensus 175 TA~~-----~v~~DI~~~L~l~~~ 193 (590)
T COG0514 175 TATP-----RVRDDIREQLGLQDA 193 (590)
T ss_pred CCCh-----HHHHHHHHHhcCCCc
Confidence 7754 457899999999984
No 51
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.84 E-value=7.9e-05 Score=78.34 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=88.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHH-HhcC-CC---CEEEEecCCHhHHHHHHHHhCCCC--CCCCeeecCCC-ChhhHHH
Q 005084 16 EPNGGLVILSSGLSLPKLIASVLL-LHSP-SQ---GTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEITADL-PANHRHT 87 (715)
Q Consensus 16 ~~~d~LvVL~tGLG~~~Iva~ll~-~y~~-~~---~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~itge~-~~~~R~~ 87 (715)
..+++|+.-..|||||..+..++. ++.. +. +.+||+.|+....++..+...-.. ...+.+++|.. ....-..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhcccccccccccccccccccccccccc
Confidence 345788889999999966666665 3322 12 247777777766666554433321 12344555544 1222234
Q ss_pred hhcCCCEEEECchHHH-------HHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccc
Q 005084 88 LYSSGQIFFVTPRILI-------VDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV 160 (715)
Q Consensus 88 lY~~ggV~fvTprIL~-------~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~ 160 (715)
....++++++|...+. .+.+.+ -....|||||||++.+..+-. .+..+.-. ..++..+|++|-.
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~--~~~l~~l~-~~~~~lLSgTP~~-- 174 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKR--YKALRKLR-ARYRWLLSGTPIQ-- 174 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHH--HHHHHCCC-ECEEEEE-SS-SS--
T ss_pred ccccceeeecccccccccccccccccccc----ccceeEEEecccccccccccc--cccccccc-cceEEeecccccc--
Confidence 4567889999988888 233333 348899999999996533322 23333322 5667889999975
Q ss_pred cCcchHHHHHHHhccCee
Q 005084 161 SGFAKTERIMKSLFIRKL 178 (715)
Q Consensus 161 ~g~~~l~~vmk~L~I~~v 178 (715)
.+...+-..+.-|.....
T Consensus 175 n~~~dl~~~l~~L~~~~~ 192 (299)
T PF00176_consen 175 NSLEDLYSLLRFLNPDPF 192 (299)
T ss_dssp SGSHHHHHHHHHHCTTTC
T ss_pred ccccccccchheeecccc
Confidence 356666677776665443
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.80 E-value=0.00022 Score=84.57 Aligned_cols=156 Identities=10% Similarity=0.057 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh---------------cCCCCEEEEecCCHhHHHHHHHHhC-
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH---------------SPSQGTLLLLSSSPNLKSQIIHYLA- 66 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y---------------~~~~~lVlvl~~t~~~~~~i~~~L~- 66 (715)
...|++++..++.. ++.+++-+||-|||..+..++..+ ...++.|+++-|+..++.++...+.
T Consensus 166 ~~iQ~qil~~i~~g-kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 166 PDVQLKIFEAWISR-KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHHhC-CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 45799999998764 599999999999998765554321 1124578888888888877554443
Q ss_pred ---CC--CCCCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHH
Q 005084 67 ---PN--APLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIK 141 (715)
Q Consensus 67 ---~~--~~~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr 141 (715)
.. ....+.+..|+.+...+...-...|+++.|+++.. ..++.++.||+||||+..... -+++.+.+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHHH
Confidence 11 01234566777663221111225689999987522 247889999999999976644 34455554
Q ss_pred hcC-cCccEEeecCCCcccccCcchHHHHHH
Q 005084 142 SLN-REAYIRAFSDKPTAMVSGFAKTERIMK 171 (715)
Q Consensus 142 ~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk 171 (715)
+.- +..-+.-|||+... +...+.+.+.
T Consensus 316 ~~~~~~rq~ILmSATl~~---dv~~l~~~~~ 343 (675)
T PHA02653 316 KHIDKIRSLFLMTATLED---DRDRIKEFFP 343 (675)
T ss_pred HhhhhcCEEEEEccCCcH---hHHHHHHHhc
Confidence 332 22359999999864 3334444443
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.76 E-value=0.00028 Score=84.98 Aligned_cols=149 Identities=14% Similarity=0.172 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hhc---CCCCEEEEecCCHhHHHH------HHHHhCCC----
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHS---PSQGTLLLLSSSPNLKSQ------IIHYLAPN---- 68 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~---~~~~lVlvl~~t~~~~~~------i~~~L~~~---- 68 (715)
-+||.+++..++...++-++..|||.|||.+++.++. +.. .++.+|+++++.....|. +.+.+...
T Consensus 17 tpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~ 96 (844)
T TIGR02621 17 FPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVE 96 (844)
T ss_pred CHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhh
Confidence 4899999999987533456668999999977664444 221 124555555555544332 22222100
Q ss_pred ---------------CCCCCeeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCCC-----------------CCC
Q 005084 69 ---------------APLLPSEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRLP-----------------TSN 115 (715)
Q Consensus 69 ---------------~~~~~~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri~-----------------~~~ 115 (715)
....+..+.|.++.+ +-..+-..--|++.| .|++..+.= ++.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT-----~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 97 AALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT-----VDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred hhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC-----HHHHcCCccccccccccccccchhhhhcc
Confidence 001245567887653 333332223488889 598876652 788
Q ss_pred eeEEEEecccccCCCChHHHHHHHHHhc--CcC---ccEEeecCCCcc
Q 005084 116 LAGLIILNTHALTENSTETFICRIIKSL--NRE---AYIRAFSDKPTA 158 (715)
Q Consensus 116 ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~---gfIkAfSdsP~s 158 (715)
++.||+|||| ... .-...+.++.+.. .+. --+..|||++..
T Consensus 172 v~~LVLDEAD-Ld~-gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ 217 (844)
T TIGR02621 172 DALIVHDEAH-LEP-AFQELLKQIMNEQQRPPDFLPLRVVELTATSRT 217 (844)
T ss_pred ceEEEEehhh-hcc-ccHHHHHHHHHhcccCcccccceEEEEecCCCc
Confidence 9999999999 333 3344666677642 221 258999999874
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.73 E-value=0.00035 Score=84.76 Aligned_cols=143 Identities=14% Similarity=0.185 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhC----CCCCCCCe-eecCCCCh
Q 005084 8 HIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLA----PNAPLLPS-EITADLPA 82 (715)
Q Consensus 8 ~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~----~~~~~~~~-~itge~~~ 82 (715)
+|++. +..+++.+|+-+||=|||..+...+.-....++.|+|+-|+.....++.+.++ ......+. .+.++...
T Consensus 12 ~i~~~-l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~ 90 (812)
T PRK11664 12 ELLTA-LKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV 90 (812)
T ss_pred HHHHH-HHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc
Confidence 44444 44455899999999999977765544222234679999999988876655442 21000111 12233222
Q ss_pred hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccc-cCC-CChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 83 NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHA-LTE-NSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 83 ~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr-~~~-~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
. .+..|.|+||-+| .+++.....++.|+.|||||||. ... .-.-+|+.++.+...+..-+..|||+...
T Consensus 91 ~------~~t~I~v~T~G~L-lr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 91 G------PNTRLEVVTEGIL-TRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred C------CCCcEEEEChhHH-HHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 1 1346999999998 56777778899999999999996 333 33456776666554556679999999864
No 55
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.66 E-value=0.00057 Score=78.10 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHH--HHHHHHHHhc-------CCCCEEEEecCCHhHHHHHHHHhCCCC-C--CCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPK--LIASVLLLHS-------PSQGTLLLLSSSPNLKSQIIHYLAPNA-P--LLP 73 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~--Iva~ll~~y~-------~~~~lVlvl~~t~~~~~~i~~~L~~~~-~--~~~ 73 (715)
|-+-+--+++. .|...+--||=|||. ++-.++++.. ..+..||||.||..++.||.+...... . ...
T Consensus 118 Qaq~wp~~l~G-rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~ 196 (519)
T KOG0331|consen 118 QAQGWPIALSG-RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRS 196 (519)
T ss_pred hhcccceeccC-CceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccE
Confidence 44444445554 588999999999992 2334445332 235689999999999999877654321 1 236
Q ss_pred eeecCCCCh-hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc-CccEEe
Q 005084 74 SEITADLPA-NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR-EAYIRA 151 (715)
Q Consensus 74 ~~itge~~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~gfIkA 151 (715)
+.+.|.++. .+...+=.---|++.||=.|.-.|-.|.+++..|+.+|+|||+|..+.--+.-|-++..+-.+ .-....
T Consensus 197 ~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm 276 (519)
T KOG0331|consen 197 TCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLM 276 (519)
T ss_pred EEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEE
Confidence 778888754 566666666679999999999999999999999999999999999998888888887777733 223555
Q ss_pred ecCC
Q 005084 152 FSDK 155 (715)
Q Consensus 152 fSds 155 (715)
||++
T Consensus 277 ~saT 280 (519)
T KOG0331|consen 277 FSAT 280 (519)
T ss_pred Eeee
Confidence 5554
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.65 E-value=0.00044 Score=87.79 Aligned_cols=146 Identities=23% Similarity=0.225 Sum_probs=101.0
Q ss_pred EEecCCCCHHHHHHHHHH---Hhc-----------CCCCEEEEecCCHhHHHHHHHHhCC---------------CCCCC
Q 005084 22 VILSSGLSLPKLIASVLL---LHS-----------PSQGTLLLLSSSPNLKSQIIHYLAP---------------NAPLL 72 (715)
Q Consensus 22 vVL~tGLG~~~Iva~ll~---~y~-----------~~~~lVlvl~~t~~~~~~i~~~L~~---------------~~~~~ 72 (715)
|+-|||=||| ++|.|-. +.. +.+..||++.|++.+..++...|.. .....
T Consensus 1 V~APTGSGKT-LAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~ 79 (1490)
T PRK09751 1 VIAPTGSGKT-LAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLR 79 (1490)
T ss_pred CcCCCCcHHH-HHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceE
Confidence 5789999999 5554421 322 1256899999999998776554421 00123
Q ss_pred CeeecCCCChhhHHHhhc-CCCEEEECchHHHHHhhcC--CCCCCCeeEEEEecccccCCCC---h-HHHHHHHHHhcCc
Q 005084 73 PSEITADLPANHRHTLYS-SGQIFFVTPRILIVDLLTQ--RLPTSNLAGLIILNTHALTENS---T-ETFICRIIKSLNR 145 (715)
Q Consensus 73 ~~~itge~~~~~R~~lY~-~ggV~fvTprIL~~DLLs~--ri~~~~ItgiVV~~AHr~~~~~---~-eaFI~rlyr~~nk 145 (715)
+.+.||+++.++|.++.. ...|++.||--|.. ||+. +-.+.+|..|||||+|.+.++. . +..+-|+.+--.+
T Consensus 80 V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~-LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 80 VGIRTGDTPAQERSKLTRNPPDILITTPESLYL-MLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHH-HHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 557899999999987765 56999999998864 5543 3468999999999999998752 3 3444455444344
Q ss_pred CccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 146 EAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
..-+.|||++-+. .+++.+-|+.+
T Consensus 159 ~~QrIgLSATI~n-------~eevA~~L~g~ 182 (1490)
T PRK09751 159 SAQRIGLSATVRS-------ASDVAAFLGGD 182 (1490)
T ss_pred CCeEEEEEeeCCC-------HHHHHHHhcCC
Confidence 5568899998763 45677766653
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.62 E-value=0.00052 Score=83.25 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCC-CCCC-C--Ce-eecCCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAP-NAPL-L--PS-EITADL 80 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~-~~~~-~--~~-~itge~ 80 (715)
-.+|++. +..+++.+|+-+||=|||..+...+.-....++.|+|+-|+.....++.+.+.. .+.. . +. .+.++.
T Consensus 7 ~~~i~~~-l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 7 LPALRDA-LAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHH-HHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 3455554 444558899999999999777766552222356899999999888776554431 1110 0 10 122221
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEeccc-ccCC-CChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTH-ALTE-NSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AH-r~~~-~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
. .-.+..|.|+||-+|. +++.....++.|+.||||||| |... ...-+|+.++.....+..-+..|||+...
T Consensus 86 ~------~s~~t~I~v~T~G~Ll-r~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~ 158 (819)
T TIGR01970 86 K------VSRRTRLEVVTEGILT-RMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDG 158 (819)
T ss_pred c------cCCCCcEEEECCcHHH-HHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence 1 1224679999999987 566667789999999999999 5554 33455665665555566779999999874
No 58
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0011 Score=76.82 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHH--HHHHHh--cCCCCE-EEEecCCHhHHHHHHHHhCCCC----CCCCe
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIA--SVLLLH--SPSQGT-LLLLSSSPNLKSQIIHYLAPNA----PLLPS 74 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva--~ll~~y--~~~~~l-Vlvl~~t~~~~~~i~~~L~~~~----~~~~~ 74 (715)
+.|.+.+-.+|.. .|-++.-.||-|||.... .|=++. ...... +|++.||..++.||.+.+.... ...+.
T Consensus 54 ~IQ~~~IP~~l~g-~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~ 132 (513)
T COG0513 54 PIQLAAIPLILAG-RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVA 132 (513)
T ss_pred HHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEE
Confidence 5688888888875 499999999999982222 111132 222222 8999999999999876654311 12356
Q ss_pred eecCCCChhhHHHhhcC-CCEEEECchHHHHHhhcC-CCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEee
Q 005084 75 EITADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQ-RLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~-ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAf 152 (715)
.+.|.++...+...-.. --|++.||--|. |++.. .++.+.|..+|+|||+++.+-.-..-|-.+...-.+.--..-|
T Consensus 133 ~i~GG~~~~~q~~~l~~~~~ivVaTPGRll-D~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllf 211 (513)
T COG0513 133 VVYGGVSIRKQIEALKRGVDIVVATPGRLL-DLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLF 211 (513)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECccHHH-HHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEE
Confidence 78888887666655555 569999998888 88775 5999999999999999999987777777788777766678888
Q ss_pred cCCCc
Q 005084 153 SDKPT 157 (715)
Q Consensus 153 SdsP~ 157 (715)
||+--
T Consensus 212 SAT~~ 216 (513)
T COG0513 212 SATMP 216 (513)
T ss_pred ecCCC
Confidence 98875
No 59
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.48 E-value=0.0016 Score=79.36 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHH-HH---HHHHhCCCC-CCCCee
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLK-SQ---IIHYLAPNA-PLLPSE 75 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~-~~---i~~~L~~~~-~~~~~~ 75 (715)
-.+|.+-++.+.+ ++|.+|+-|||=|||.....-+. +-.++....|++=|++.+. .| |.+.+...+ ...+..
T Consensus 72 Y~HQ~~A~~~~~~-G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~ 150 (851)
T COG1205 72 YSHQVDALRLIRE-GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGR 150 (851)
T ss_pred cHHHHHHHHHHHC-CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeee
Confidence 3578887777665 46999999999999944433332 3345566778888888776 34 555554433 235778
Q ss_pred ecCCCChhhHHHhhcC-CCEEEECchHHHHHhhcCCC----CCCCeeEEEEecccccCC--CChHHHHHHHHHhcCc---
Q 005084 76 ITADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQRL----PTSNLAGLIILNTHALTE--NSTETFICRIIKSLNR--- 145 (715)
Q Consensus 76 itge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~ri----~~~~ItgiVV~~AHr~~~--~~~eaFI~rlyr~~nk--- 145 (715)
.||++++++|+.+|.+ ..|++-+|.-|.-=||...- -......|||||+|-=.| .+.-+.++|..+..-+
T Consensus 151 y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~ 230 (851)
T COG1205 151 YTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYG 230 (851)
T ss_pred ecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccC
Confidence 9999999999888876 77888889877664444322 233488999999998777 6777888885554433
Q ss_pred -CccEEeecCCCc
Q 005084 146 -EAYIRAFSDKPT 157 (715)
Q Consensus 146 -~gfIkAfSdsP~ 157 (715)
.+-+.+.|++-+
T Consensus 231 ~~~q~i~~SAT~~ 243 (851)
T COG1205 231 SPLQIICTSATLA 243 (851)
T ss_pred CCceEEEEecccc
Confidence 556677777655
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.46 E-value=0.00044 Score=75.53 Aligned_cols=138 Identities=9% Similarity=0.013 Sum_probs=78.3
Q ss_pred CeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCC-----------CChhhH
Q 005084 19 GGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITAD-----------LPANHR 85 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge-----------~~~~~R 85 (715)
+.+|+.|||-|||.++...+. +....+..++++-|+..+..++.+.+..........+.+. ...-++
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 468999999999955443332 2223456677777777777665554433100112212221 111111
Q ss_pred H--------HhhcCCCEEEECchHHHHHhhcCC----CCCC--CeeEEEEecccccCCCChHHHHHHHHHhc-CcCccEE
Q 005084 86 H--------TLYSSGQIFFVTPRILIVDLLTQR----LPTS--NLAGLIILNTHALTENSTETFICRIIKSL-NREAYIR 150 (715)
Q Consensus 86 ~--------~lY~~ggV~fvTprIL~~DLLs~r----i~~~--~ItgiVV~~AHr~~~~~~eaFI~rlyr~~-nk~gfIk 150 (715)
. ..+....|.+.||..+..-+..+. +... ..+.||+||||...+.... ++..+++.- +...-+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~-~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLA-LILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHH-HHHHHHHHHHHcCCCEE
Confidence 1 122346799999999888777631 1111 1278999999999875432 344443322 2234589
Q ss_pred eecCCCc
Q 005084 151 AFSDKPT 157 (715)
Q Consensus 151 AfSdsP~ 157 (715)
+|||++.
T Consensus 160 ~~SATlp 166 (358)
T TIGR01587 160 LMSATLP 166 (358)
T ss_pred EEecCch
Confidence 9999965
No 61
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.45 E-value=0.00053 Score=81.08 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=93.8
Q ss_pred hHHHHHHHHHH---hc-CCCCeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHH-HHhCCCCC-CCCe
Q 005084 3 LEFHQHIIAEL---LQ-EPNGGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQII-HYLAPNAP-LLPS 74 (715)
Q Consensus 3 L~YQ~~I~~~~---l~-~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~-~~L~~~~~-~~~~ 74 (715)
-.||...+..+ .. +.+-.|||||||=|||+.+-.|+. +. +..-+.||+|.-+..+..|-. ++..-.+. ...+
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n 246 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMN 246 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcccee
Confidence 35888776654 33 333579999999999998888887 43 444578999999998886643 33322111 1233
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhcC-----CCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQ-----RLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~-----ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
.+++..... +..|+++|=|.+.-=+... ++++..+.+||||||||-.-+ -+.-|+..|- .+.
T Consensus 247 ~i~~~~~~~-------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~~~I~dYFd-----A~~ 313 (875)
T COG4096 247 KIEDKKGDT-------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EWSSILDYFD-----AAT 313 (875)
T ss_pred eeecccCCc-------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hhHHHHHHHH-----HHH
Confidence 333322111 6689999999887766655 799999999999999995331 1224444442 334
Q ss_pred EeecCCCcc
Q 005084 150 RAFSDKPTA 158 (715)
Q Consensus 150 kAfSdsP~s 158 (715)
.++|++|..
T Consensus 314 ~gLTATP~~ 322 (875)
T COG4096 314 QGLTATPKE 322 (875)
T ss_pred HhhccCccc
Confidence 555888875
No 62
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.38 E-value=0.00085 Score=80.98 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=110.2
Q ss_pred chHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCeee
Q 005084 2 VLEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~i 76 (715)
|-+|--|++-- +|.+ .-+.-|+||=||| +++.|-. +..-.|.-|+|+.|++.++.|..+.+.... ...+.++
T Consensus 81 ~~~ydvQliGg~~Lh~--G~Iaem~TGeGKT-L~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i 157 (896)
T PRK13104 81 LRHFDVQLIGGMVLHE--GNIAEMRTGEGKT-LVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVI 157 (896)
T ss_pred CCcchHHHhhhhhhcc--CccccccCCCCch-HHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 34677777776 4666 7799999999999 5555444 233345568999999999987655543211 1246788
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCC--C-----CCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLP--T-----SNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~--~-----~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
+|++++.+|+..|. .-|++.||--|..|+|...+. + ..+.-+||||||++.= ..++.|+|
T Consensus 158 ~gg~~~~~r~~~y~-~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI------------DeArtPLI 224 (896)
T PRK13104 158 YPDMSHKEKQEAYK-ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI------------DEARTPLI 224 (896)
T ss_pred eCCCCHHHHHHHhC-CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh------------hccCCcee
Confidence 99999999999994 689999999999999998854 3 4788999999998754 44578888
Q ss_pred EeecCCCcccccCcchHHHHHHHhc
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
.+ -.+...+.-+..+..+.+.|.
T Consensus 225 IS--g~~~~~~~~y~~~~~~v~~l~ 247 (896)
T PRK13104 225 IS--GAAEDSSELYIKINSLIPQLK 247 (896)
T ss_pred ee--CCCccchHHHHHHHHHHHHHH
Confidence 74 222222223556666666554
No 63
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.29 E-value=0.0045 Score=74.75 Aligned_cols=211 Identities=15% Similarity=0.172 Sum_probs=132.9
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh--cC---------CCCEEEEecCCHhHHHHH----HHHhCCCCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH--SP---------SQGTLLLLSSSPNLKSQI----IHYLAPNAP 70 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y--~~---------~~~lVlvl~~t~~~~~~i----~~~L~~~~~ 70 (715)
|-..|.-|+....|.|+|.|||=||| .+|.|-.+. +. .+-+|+-++|.+.++.-+ ...|... .
T Consensus 115 QS~vFp~aY~SneNMLIcAPTGsGKT-~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-g 192 (1230)
T KOG0952|consen 115 QSEVFPVAYKSNENMLICAPTGSGKT-VLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-G 192 (1230)
T ss_pred HHHhhhhhhcCCCCEEEECCCCCCch-HHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-c
Confidence 45566667776679999999999999 666554422 21 134666777777776443 3333321 1
Q ss_pred CCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCC-----CCCeeEEEEecccccC---CCChHHHHHHHHHh
Q 005084 71 LLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLP-----TSNLAGLIILNTHALT---ENSTETFICRIIKS 142 (715)
Q Consensus 71 ~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~-----~~~ItgiVV~~AHr~~---~~~~eaFI~rlyr~ 142 (715)
..+.++||++...+=+ -..--|++-||-= =|.++.+=. .++|.++||||.|-+. |..-|+-++|..|+
T Consensus 193 i~v~ELTGD~ql~~te--i~~tqiiVTTPEK--wDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ 268 (1230)
T KOG0952|consen 193 ISVRELTGDTQLTKTE--IADTQIIVTTPEK--WDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRL 268 (1230)
T ss_pred ceEEEecCcchhhHHH--HHhcCEEEecccc--eeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHH
Confidence 2578999998664443 5678899999974 355665444 5789999999999885 57899999999876
Q ss_pred cC---cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHH
Q 005084 143 LN---REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILE 219 (715)
Q Consensus 143 ~n---k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~ 219 (715)
-. ..-+|.|+||+-- .|.-|.+.++-=.-..++.+- ..-.|.. -...++=++.. ..+.+.+..=.-
T Consensus 269 vessqs~IRivgLSATlP----N~eDvA~fL~vn~~~glfsFd---~~yRPvp--L~~~~iG~k~~--~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 269 VESSQSMIRIVGLSATLP----NYEDVARFLRVNPYAGLFSFD---QRYRPVP--LTQGFIGIKGK--KNRQQKKNIDEV 337 (1230)
T ss_pred HHhhhhheEEEEeeccCC----CHHHHHHHhcCCCccceeeec---ccccccc--eeeeEEeeecc--cchhhhhhHHHH
Confidence 54 3567999999865 456666665532124555441 1111111 11133333333 445555444445
Q ss_pred HHHHHHHHHHHcCC
Q 005084 220 VMDACLKEMRKTNK 233 (715)
Q Consensus 220 ~~~~~l~ELkr~n~ 233 (715)
|.+++++-+++..+
T Consensus 338 ~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQ 351 (1230)
T ss_pred HHHHHHHHHHcCCe
Confidence 77777777777665
No 64
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.29 E-value=0.0014 Score=79.23 Aligned_cols=135 Identities=15% Similarity=0.209 Sum_probs=100.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLL-HSPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~-y~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~it 77 (715)
|-+||.+++--++.. .|-++.++||=||| +++.|-.+ ..-.+..|+|+-|+..++.|+.+.+.... ...+..+.
T Consensus 93 ~tp~qvQ~I~~i~l~-~gvIAeaqTGeGKT-LAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMH-KGFITEMQTGEGKT-LTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcC-CCeEEEeCCCCChH-HHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 468999999887664 38888999999999 44433321 21123447888889999888766553211 12355788
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCC-CCCCCe-------eEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQR-LPTSNL-------AGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r-i~~~~I-------tgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
|.++..++.+.| ..-|++.||-=|..|+|... +.++.+ .-+|||||+++.- ...+.|+|
T Consensus 171 GG~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi------------DEArTPLI 237 (970)
T PRK12899 171 SGSPLEKRKEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI------------DEARTPLI 237 (970)
T ss_pred CCCCHHHHHHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh------------hccCCcee
Confidence 889988888888 47899999999999999988 777755 6899999998764 45688888
Q ss_pred Ee
Q 005084 150 RA 151 (715)
Q Consensus 150 kA 151 (715)
.+
T Consensus 238 IS 239 (970)
T PRK12899 238 IS 239 (970)
T ss_pred ee
Confidence 74
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.27 E-value=0.00072 Score=80.41 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=93.5
Q ss_pred chHHHHHHHHHH-hcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCeee
Q 005084 2 VLEFHQHIIAEL-LQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~-l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~i 76 (715)
|-+|..|++.-+ +.+ +.+.-|.||=||| ++|.|-. +..-.|.-|.|+.||+.++.|..+.+.... ...+..+
T Consensus 55 ~~p~~vQlig~~~l~~--G~Iaem~TGeGKT-Lva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i 131 (745)
T TIGR00963 55 MRPFDVQLIGGIALHK--GKIAEMKTGEGKT-LTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLI 131 (745)
T ss_pred CCccchHHhhhhhhcC--CceeeecCCCccH-HHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 346777777764 444 6688899999999 5555544 333335569999999999977655443211 1245688
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCC-------CCCCCeeEEEEecccccCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQR-------LPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r-------i~~~~ItgiVV~~AHr~~~ 129 (715)
+|.+++.+|+..|. ..|++.||-=|.-|+|... +....+..+||||||++.-
T Consensus 132 ~g~~~~~~r~~~y~-~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 132 LSGMSPEERREAYA-CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred eCCCCHHHHHHhcC-CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 99999999999996 5899999999999999887 3668889999999999755
No 66
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.23 E-value=0.0014 Score=79.22 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=113.6
Q ss_pred chHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~~~ 75 (715)
|-+|--|++-- +|.+ .-+.=|.||=||| ++|.|-. +..-.|.-|-|+.+++.++++ +...+...+ ..+..
T Consensus 81 m~~ydVQliGg~~Lh~--G~iaEM~TGEGKT-LvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~ 156 (913)
T PRK13103 81 MRHFDVQLIGGMTLHE--GKIAEMRTGEGKT-LVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLG-LSVGI 156 (913)
T ss_pred CCcchhHHHhhhHhcc--CccccccCCCCCh-HHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEE
Confidence 34566777777 4555 7788899999999 6666555 444567888999999998855 444444322 24567
Q ss_pred ecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCC-------CCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPT-------SNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 76 itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~-------~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
+++++++++|++.|. .-|++.|--.|.-|.|...+-. ......||||+|++.= ..+++|+
T Consensus 157 i~~~~~~~err~~Y~-~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI------------DEArtPL 223 (913)
T PRK13103 157 VTPFQPPEEKRAAYA-ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI------------DEARTPL 223 (913)
T ss_pred ECCCCCHHHHHHHhc-CCEEEEcccccccchhhccceechhhhcccccceeEechhhheec------------cccCCce
Confidence 899999999999998 7999999999999999999887 7778899999999864 3467888
Q ss_pred EEeecCCCcccccCcchHHHHHHHh
Q 005084 149 IRAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 149 IkAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
|.+ ..+...+.-|..+.++++.|
T Consensus 224 IIS--g~~~~~~~~y~~~~~~v~~L 246 (913)
T PRK13103 224 IIS--GQAEDSSKLYIEINRLIPRL 246 (913)
T ss_pred eec--CCCccchHHHHHHHHHHHHH
Confidence 864 33232233455677777776
No 67
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.22 E-value=0.0027 Score=77.71 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHH-HHHHHhCCCCCCCCeeecCCCCh
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKS-QIIHYLAPNAPLLPSEITADLPA 82 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~-~i~~~L~~~~~~~~~~itge~~~ 82 (715)
+.|.+++..+|.. .|++|+||||=||- +...|=.+.. +++.+|+.|-..+++ |+...+.. ...-..+++..+.
T Consensus 267 ~~Q~eaI~~~l~G-kd~fvlmpTG~GKS-LCYQlPA~l~--~gitvVISPL~SLm~DQv~~L~~~--~I~a~~L~s~q~~ 340 (941)
T KOG0351|consen 267 PNQLEAINATLSG-KDCFVLMPTGGGKS-LCYQLPALLL--GGVTVVISPLISLMQDQVTHLSKK--GIPACFLSSIQTA 340 (941)
T ss_pred hhHHHHHHHHHcC-CceEEEeecCCcee-eEeecccccc--CCceEEeccHHHHHHHHHHhhhhc--CcceeeccccccH
Confidence 4688888876664 59999999999998 3332222222 458888888887764 55444222 1245678888999
Q ss_pred hhHHHhhcC--C-----CEEEECchHHH-----HHhhcCCCCCCCeeEEEEecccccCCCC-----hHHHHHHHHHhcCc
Q 005084 83 NHRHTLYSS--G-----QIFFVTPRILI-----VDLLTQRLPTSNLAGLIILNTHALTENS-----TETFICRIIKSLNR 145 (715)
Q Consensus 83 ~~R~~lY~~--g-----gV~fvTprIL~-----~DLLs~ri~~~~ItgiVV~~AHr~~~~~-----~eaFI~rlyr~~nk 145 (715)
.+|...|.. . .++++||--++ .+.+........|+.+||||||-+..-. .|-- +-+.|.+..
T Consensus 341 ~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~-l~~l~~~~~ 419 (941)
T KOG0351|consen 341 AERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR-LGLLRIRFP 419 (941)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH-HHHHHhhCC
Confidence 999999864 3 48999997654 3445555666679999999999876511 2222 223333333
Q ss_pred CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCC
Q 005084 146 EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMS 207 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt 207 (715)
.--|.|+||+... .--+.|+.+|++++..+. +.++++.. -..+|+-+.+
T Consensus 420 ~vP~iALTATAT~-----~v~~DIi~~L~l~~~~~~-------~~sfnR~N-L~yeV~~k~~ 468 (941)
T KOG0351|consen 420 GVPFIALTATATE-----RVREDVIRSLGLRNPELF-------KSSFNRPN-LKYEVSPKTD 468 (941)
T ss_pred CCCeEEeehhccH-----HHHHHHHHHhCCCCccee-------cccCCCCC-ceEEEEeccC
Confidence 3347899999975 446789999999999966 67776543 3455555554
No 68
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.19 E-value=0.0028 Score=61.34 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=83.7
Q ss_pred CeEEEecCCCCHHH-HHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 19 GGLVILSSGLSLPK-LIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 19 d~LvVL~tGLG~~~-Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
=+.|=|.+|=|||+ ++..+++-+-..+..||||+||..+.+-..+.|+.. +.-+... .-.+ ..+...-|=+.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~--~~~~-~~~g~~~i~vM 78 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTN--ARMR-THFGSSIIDVM 78 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS----SEEEEST--TSS-----SSSSEEEE
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC----CcccCce--eeec-cccCCCccccc
Confidence 35677899999998 688888855455889999999999999999999752 3333311 1112 45667777788
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCc--cEEeecCCCcc
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREA--YIRAFSDKPTA 158 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~g--fIkAfSdsP~s 158 (715)
|.-.+..=++. -.......-||+||||= ++..+-+|+..+. +.+..| -+.-+||+|-.
T Consensus 79 c~at~~~~~~~-p~~~~~yd~II~DEcH~-~Dp~sIA~rg~l~-~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 79 CHATYGHFLLN-PCRLKNYDVIIMDECHF-TDPTSIAARGYLR-ELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp EHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHH-HHHHTTS-EEEEEESS-TT
T ss_pred ccHHHHHHhcC-cccccCccEEEEecccc-CCHHHHhhheeHH-HhhhccCeeEEEEeCCCCC
Confidence 88876655555 66678899999999998 4555567776433 334455 45667999864
No 69
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.09 E-value=0.0042 Score=72.95 Aligned_cols=209 Identities=21% Similarity=0.235 Sum_probs=135.3
Q ss_pred chHHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHH-Hh--cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLL-LH--SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y--~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~ 75 (715)
|-+||.+-+.= +.+.+.||++.=--|||||--.-.||. ++ ..-.|-.||+.|...+..+..++-.-++......
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~ 247 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVV 247 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEE
Confidence 44688765544 455566777666689999944334443 33 3324556777888888888877766655445566
Q ss_pred ecCCC--ChhhHHHhhcCCC--EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCccEE
Q 005084 76 ITADL--PANHRHTLYSSGQ--IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 76 itge~--~~~~R~~lY~~gg--V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gfIk 150 (715)
.-|+- -..-|+.+|..|+ |++-|--|.++| ...+.--.=.-||||||||+.. +|--.-+++.|...|+ +
T Consensus 248 ~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nr----L 321 (971)
T KOG0385|consen 248 YHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNR----L 321 (971)
T ss_pred EeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccce----e
Confidence 66764 3456778888864 566666787777 3333233335789999999976 6666677777777766 4
Q ss_pred eecCCCcc-----------------ccc-----------CcchHHHHHHHhc-cCeeEeccCCchhhhhhhccCCCeEEE
Q 005084 151 AFSDKPTA-----------------MVS-----------GFAKTERIMKSLF-IRKLHLWPRFQVNVSEELEREPPVVVD 201 (715)
Q Consensus 151 AfSdsP~s-----------------f~~-----------g~~~l~~vmk~L~-I~~v~l~PRf~~~V~~~l~~~~~~V~E 201 (715)
-+|-+|-. |++ +...-+++..+|+ |=+-++.-|...+|..+| -|+.-+.
T Consensus 322 LlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL--ppKkE~~ 399 (971)
T KOG0385|consen 322 LLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL--PPKKELI 399 (971)
T ss_pred EeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC--CCcceee
Confidence 44555431 111 1122333455553 445667778888999998 4455667
Q ss_pred EEecCCccHHHHHHHHH
Q 005084 202 VRVPMSKYMGGIQKAIL 218 (715)
Q Consensus 202 i~V~lt~~m~~Iq~~l~ 218 (715)
|.|+|++--++++.+|+
T Consensus 400 iyvgms~mQkk~Y~~iL 416 (971)
T KOG0385|consen 400 IYVGMSSMQKKWYKAIL 416 (971)
T ss_pred EeccchHHHHHHHHHHH
Confidence 89999999999998876
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.99 E-value=0.0073 Score=75.94 Aligned_cols=143 Identities=12% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCCCCeEEE-ecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCH----hHHHHHHHHhCCCCCCCCeeecCC
Q 005084 6 HQHIIAELLQEPNGGLVI-LSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSP----NLKSQIIHYLAPNAPLLPSEITAD 79 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvV-L~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~----~~~~~i~~~L~~~~~~~~~~itge 79 (715)
-.+|+.. +.++ +.+|| -.||=|||..+-.++... ....+.|.+.-|.. .+..++.+++...- -..+...
T Consensus 79 r~~Il~a-i~~~-~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G~~VGY~ 153 (1294)
T PRK11131 79 KQDILEA-IRDH-QVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL---GGCVGYK 153 (1294)
T ss_pred HHHHHHH-HHhC-CeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---cceecee
Confidence 3455554 4442 44444 499999999888776632 22234555555543 44567777765410 0111111
Q ss_pred CChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEeccc-ccCCC-ChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 80 LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTH-ALTEN-STETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 80 ~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AH-r~~~~-~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
+.-+++. -....|.|+||-+|..-+..+.. ++.++.||||||| |..+. ..-.++.++.. .++..-+..|||+..
T Consensus 154 vrf~~~~--s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlKvILmSATid 229 (1294)
T PRK11131 154 VRFNDQV--SDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVIITSATID 229 (1294)
T ss_pred ecCcccc--CCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhh-cCCCceEEEeeCCCC
Confidence 1111111 13578999999999988887765 9999999999999 66553 22334444433 344567889999985
No 71
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.71 E-value=0.015 Score=73.47 Aligned_cols=143 Identities=14% Similarity=0.113 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEecCCHhHH----HHHHHHhCCCCCCCCeeecCCCC
Q 005084 7 QHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHS-PSQGTLLLLSSSPNLK----SQIIHYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 7 ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~-~~~~lVlvl~~t~~~~----~~i~~~L~~~~~~~~~~itge~~ 81 (715)
.+|+.. +.+++-.+|+-+||-|||..+-.++.... ...+.|++.-|..... .++.+++... .-..+...+.
T Consensus 73 ~~Il~~-l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~---lG~~VGY~vR 148 (1283)
T TIGR01967 73 EDIAEA-IAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP---LGEKVGYKVR 148 (1283)
T ss_pred HHHHHH-HHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC---cceEEeeEEc
Confidence 455555 44433445555999999999888876322 2345677666665433 5666666542 1112222222
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEeccc-ccCCC-ChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTH-ALTEN-STETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AH-r~~~~-~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
-+.+. =.+..|.|+|+-||..-+..+.. ++.++.||||||| |.... ..-+++.++.. ..+..-+..|||+..
T Consensus 149 ~~~~~--s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmSATld 222 (1283)
T TIGR01967 149 FHDQV--SSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITSATID 222 (1283)
T ss_pred CCccc--CCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEeCCcC
Confidence 22221 13567999999999887776654 8999999999999 56553 34455555543 334566899999875
No 72
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.67 E-value=0.008 Score=63.92 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=87.2
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCCeeec
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLPSEIT 77 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~~~it 77 (715)
-+|.-||+.- +|.+ +-|+=|.||=|||.|++....++.-.|.-|-|+-+++.+.++ +.......+ ..+..++
T Consensus 77 ~p~~vQll~~l~L~~--G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG-lsv~~~~ 153 (266)
T PF07517_consen 77 RPYDVQLLGALALHK--GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLG-LSVGIIT 153 (266)
T ss_dssp ---HHHHHHHHHHHT--TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT---EEEEE
T ss_pred cccHHHHhhhhhccc--ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhh-hccccCc
Confidence 4677777777 4555 779999999999955554444555568889999999988744 333332211 1467788
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCee-------EEEEecccccC
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLA-------GLIILNTHALT 128 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~It-------giVV~~AHr~~ 128 (715)
++.++.+|++.|... |.+.|..-+.-|.|..++...... .+|||||+.+.
T Consensus 154 ~~~~~~~r~~~Y~~d-I~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 154 SDMSSEERREAYAAD-IVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TTTEHHHHHHHHHSS-EEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cccCHHHHHHHHhCc-ccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 888899999999886 999999999999998887755444 57899998764
No 73
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.63 E-value=0.019 Score=69.22 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---HhcC----C--CCEEEEecCCHhHHHHHHHHh----CCCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHSP----S--QGTLLLLSSSPNLKSQIIHYL----APNAP 70 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~----~--~~lVlvl~~t~~~~~~i~~~L----~~~~~ 70 (715)
+-|...+..+++ +.|+|||-|||=||| .+|-|=. +... + +-.+|-+.|=+.++.-+..-| ...+
T Consensus 25 ~~Q~~a~~~i~~-G~nvLiiAPTGsGKT-eAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G- 101 (814)
T COG1201 25 PPQRYAIPEIHS-GENVLIIAPTGSGKT-EAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG- 101 (814)
T ss_pred HHHHHHHHHHhC-CCceEEEcCCCCChH-HHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-
Confidence 568898988885 569999999999999 4443322 2222 1 234566677776664433322 2211
Q ss_pred CCCeeecCCCChhhHHHhhcC-CCEEEECchHHHHHhhcCCC--CCCCeeEEEEecccccCCC---ChHHHHHHHHHhcC
Q 005084 71 LLPSEITADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQRL--PTSNLAGLIILNTHALTEN---STETFICRIIKSLN 144 (715)
Q Consensus 71 ~~~~~itge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~ri--~~~~ItgiVV~~AHr~~~~---~~eaFI~rlyr~~n 144 (715)
..+.+-||+++..+|+++=.+ -.|+..||--|...|.+.+. .+.+|.-+||||.|.+.++ ++=+--++..+.-.
T Consensus 102 ~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~ 181 (814)
T COG1201 102 IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA 181 (814)
T ss_pred CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC
Confidence 245789999999888877665 78999999999998887543 5788999999999999863 33333444555444
Q ss_pred cCccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 145 REAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 145 k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
..+---|+||+-+. .+++-+-|.-.
T Consensus 182 ~~~qRIGLSATV~~-------~~~varfL~g~ 206 (814)
T COG1201 182 GDFQRIGLSATVGP-------PEEVAKFLVGF 206 (814)
T ss_pred cccEEEeehhccCC-------HHHHHHHhcCC
Confidence 45667799999874 55555555554
No 74
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.58 E-value=0.011 Score=65.16 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---HhcCCCCEEEEecCCHhHHHHHHHHhCCCCC---CCCeeecC
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAP---LLPSEITA 78 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~---~~~~~itg 78 (715)
-|++.+--+|.. .|.+...-||-|||.-.|.=+. +..|..-.+|||.||..+.+||.+.....+. ....++-|
T Consensus 87 IQ~~aiP~~L~g-~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvG 165 (476)
T KOG0330|consen 87 IQSEAIPVALGG-RDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVG 165 (476)
T ss_pred hhhhhcchhhCC-CcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEec
Confidence 466666666765 4889989999999944442222 3345456899999999999999887654322 13455555
Q ss_pred CC-ChhhHHHhhcCCCEEEECchHHHHHhh-cCCCCCCCeeEEEEecccccCCCChHH---HHHHHHHhcCcCccEEeec
Q 005084 79 DL-PANHRHTLYSSGQIFFVTPRILIVDLL-TQRLPTSNLAGLIILNTHALTENSTET---FICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 79 e~-~~~~R~~lY~~ggV~fvTprIL~~DLL-s~ri~~~~ItgiVV~~AHr~~~~~~ea---FI~rlyr~~nk~gfIkAfS 153 (715)
.. ....+-.+.++--|+++||--|.--|. ++-++.+.+.-+|.|||+|+.+..=+. +|++.+..+.+ -.-||
T Consensus 166 G~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erq---t~Lfs 242 (476)
T KOG0330|consen 166 GMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQ---TFLFS 242 (476)
T ss_pred CchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccce---EEEEE
Confidence 54 567888999999999999999988888 899999999999999999999855333 55666554433 44566
Q ss_pred CCCcccccCcchHH
Q 005084 154 DKPTAMVSGFAKTE 167 (715)
Q Consensus 154 dsP~sf~~g~~~l~ 167 (715)
|+=- .+..+|+
T Consensus 243 ATMt---~kv~kL~ 253 (476)
T KOG0330|consen 243 ATMT---KKVRKLQ 253 (476)
T ss_pred eecc---hhhHHHH
Confidence 6533 3555554
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.023 Score=69.88 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEecCCHhHHHH-HHHHhCCCC--CCCCeeecCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHS-PSQGTLLLLSSSPNLKSQ-IIHYLAPNA--PLLPSEITAD 79 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~-~~~~lVlvl~~t~~~~~~-i~~~L~~~~--~~~~~~itge 79 (715)
+||+.-+.- |+.+.+-||+-|||=||| +||.+-..+. ..+..||...|.+.+..| +.+.+..-+ ......+||+
T Consensus 122 ~fQ~~a~~~-Ler~esVlV~ApTssGKT-vVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGD 199 (1041)
T COG4581 122 PFQQEAIAI-LERGESVLVCAPTSSGKT-VVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGD 199 (1041)
T ss_pred HHHHHHHHH-HhCCCcEEEEccCCCCcc-hHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecc
Confidence 688886655 454558899999999999 8888776432 225559999999988755 454444322 2345889999
Q ss_pred CChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC----hHHHHHHHHHhcCcCccEEeecCC
Q 005084 80 LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS----TETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 80 ~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~----~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
++.+. ...|.+.|+-||.|=|..|--...+|.-||+||.|=+-... =|--|+-+= ++=-+.+|||+
T Consensus 200 v~IN~------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP----~~v~~v~LSAT 269 (1041)
T COG4581 200 VSINP------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP----DHVRFVFLSAT 269 (1041)
T ss_pred eeeCC------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC----CCCcEEEEeCC
Confidence 87653 58899999999999999999999999999999999775522 233333322 22257889998
Q ss_pred CcccccCcchHHHHHHHhccCee
Q 005084 156 PTAMVSGFAKTERIMKSLFIRKL 178 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L~I~~v 178 (715)
-+. -.....-+...+=+.+
T Consensus 270 v~N----~~EF~~Wi~~~~~~~~ 288 (1041)
T COG4581 270 VPN----AEEFAEWIQRVHSQPI 288 (1041)
T ss_pred CCC----HHHHHHHHHhccCCCe
Confidence 663 3445555554443333
No 76
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=96.32 E-value=0.12 Score=59.16 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHH--HHHHHHHHHhc-C---------CCCEEEEecCCHhHHHHHHHHhCCC--CC-
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLP--KLIASVLLLHS-P---------SQGTLLLLSSSPNLKSQIIHYLAPN--AP- 70 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~--~Iva~ll~~y~-~---------~~~lVlvl~~t~~~~~~i~~~L~~~--~~- 70 (715)
|++..--.++. .|-|.|.-||-|+| +++-.+....+ | .|...++|+||..+.+||.++-..- +.
T Consensus 272 qR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg 350 (673)
T KOG0333|consen 272 QRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG 350 (673)
T ss_pred HHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccccc
Confidence 44444434444 49999999999999 33334433322 3 2578899999999999997654221 11
Q ss_pred CCCeeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 71 LLPSEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 71 ~~~~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
..++.|-|..+-+ +=-++=.-.-|+++||-=|+-=|-..-+-.++++-+|.|||.|..+---|.-+..+.-+--.
T Consensus 351 ~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPs---- 426 (673)
T KOG0333|consen 351 IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPS---- 426 (673)
T ss_pred ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCc----
Confidence 1334444444433 32355555678999998877555556667889999999999999886666555555433211
Q ss_pred EeecCCCcccccCcchHHHHHHHhccCe
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSLFIRK 177 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L~I~~ 177 (715)
--++|++ ..+...+.+|+|+.-++
T Consensus 427 --sn~k~~t--de~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 427 --SNAKPDT--DEKEGEERVRKNFSSSK 450 (673)
T ss_pred --cccCCCc--cchhhHHHHHhhccccc
Confidence 0234544 35667788888776555
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.24 E-value=0.033 Score=61.92 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH-HHHHHHhCCCCCCCCeeecCCCCh
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK-SQIIHYLAPNAPLLPSEITADLPA 82 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~-~~i~~~L~~~~~~~~~~itge~~~ 82 (715)
+-|.+.+.-+...++|..|+||||-|+. +-..|=.+-+ +++-+|+.|--.++ .||-..+.. ..+...++..++.
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKS-LCyQLPaL~~--~gITIV~SPLiALIkDQiDHL~~L--KVp~~SLNSKlSt 97 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKS-LCYQLPALVH--GGITIVISPLIALIKDQIDHLKRL--KVPCESLNSKLST 97 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchh-hhhhchHHHh--CCeEEEehHHHHHHHHHHHHHHhc--CCchhHhcchhhH
Confidence 3577777777777789999999999998 4444433332 56778887666555 455544432 1346678888999
Q ss_pred hhHHHhhcC-------CCEEEECchHH----HHHhhcCCCCCCCeeEEEEecccccCC---CChHH-HHHHHHHhcCcCc
Q 005084 83 NHRHTLYSS-------GQIFFVTPRIL----IVDLLTQRLPTSNLAGLIILNTHALTE---NSTET-FICRIIKSLNREA 147 (715)
Q Consensus 83 ~~R~~lY~~-------ggV~fvTprIL----~~DLLs~ri~~~~ItgiVV~~AHr~~~---~~~ea-FI~rlyr~~nk~g 147 (715)
.+|.++-.. =.++.|||--- --|+|.+-..-+..+-+||||||-+.. .+--- .-+--.|+.-..-
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCC
Confidence 999877642 46889999764 457899999999999999999997743 11111 1233456666666
Q ss_pred cEEeecCCCcccccCcchHHHHHHHhccCe
Q 005084 148 YIRAFSDKPTAMVSGFAKTERIMKSLFIRK 177 (715)
Q Consensus 148 fIkAfSdsP~sf~~g~~~l~~vmk~L~I~~ 177 (715)
--.|+|++... .--+.|-..|++++
T Consensus 178 pwvALTATA~~-----~VqEDi~~qL~L~~ 202 (641)
T KOG0352|consen 178 PWVALTATANA-----KVQEDIAFQLKLRN 202 (641)
T ss_pred ceEEeecccCh-----hHHHHHHHHHhhcC
Confidence 67899988875 33456777787765
No 78
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.17 E-value=0.011 Score=71.35 Aligned_cols=153 Identities=16% Similarity=0.250 Sum_probs=105.9
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCeeec
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEIT 77 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~it 77 (715)
-+|--||+.- +|.+ .-+.-|.||=||| ++|.|-. +..-.|.-|-|+.|++.++.+..+.+.... ...+..++
T Consensus 81 ~~~dvQlig~l~L~~--G~Iaem~TGeGKT-Lva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~ 157 (830)
T PRK12904 81 RHFDVQLIGGMVLHE--GKIAEMKTGEGKT-LVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVIL 157 (830)
T ss_pred CCCccHHHhhHHhcC--CchhhhhcCCCcH-HHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEc
Confidence 4566677766 4555 6788899999999 5555544 333335557799999999877544332211 12467899
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCC-------CCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLP-------TSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~-------~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
|++++.+|+..|. ..|++.||-=|.-|+|...+- ...+.-+|||||+++.= ..++.|+|.
T Consensus 158 ~~~~~~er~~~y~-~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI------------DeArtpLii 224 (830)
T PRK12904 158 SGMSPEERREAYA-ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI------------DEARTPLII 224 (830)
T ss_pred CCCCHHHHHHhcC-CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee------------ccCCCceee
Confidence 9999999999995 789999999999999998873 45566789999998754 335677776
Q ss_pred eecCCCcccccCcchHHHHHHHh
Q 005084 151 AFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 151 AfSdsP~sf~~g~~~l~~vmk~L 173 (715)
+ ..+...+.-+..+.++.+.|
T Consensus 225 S--g~~~~~~~~y~~~~~~v~~l 245 (830)
T PRK12904 225 S--GPAEDSSELYKRANKIVPTL 245 (830)
T ss_pred E--CCCCcccHHHHHHHHHHHhc
Confidence 4 22221122345566666666
No 79
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.11 E-value=0.043 Score=62.06 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=107.9
Q ss_pred CchHHHHHHHHHHhcCCCCeEEEec--CCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHH--HHHHHHhCCCCCCCCee
Q 005084 1 MVLEFHQHIIAELLQEPNGGLVILS--SGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLK--SQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 1 ~lL~YQ~~I~~~~l~~~~d~LvVL~--tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~--~~i~~~L~~~~~~~~~~ 75 (715)
|||+||++-+.-+|.. +|=+.+| -||||| |-|.-+. +|.....+++|.+++-... +.+..+|..+. +...+
T Consensus 198 ~LlPFQreGv~faL~R--gGR~llADeMGLGKT-iQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~-pi~vv 273 (689)
T KOG1000|consen 198 RLLPFQREGVIFALER--GGRILLADEMGLGKT-IQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIH-PIFVV 273 (689)
T ss_pred hhCchhhhhHHHHHhc--CCeEEEecccccchH-HHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhccccc-ceEEE
Confidence 6899999999999998 5544444 699999 6665555 7777788888888876543 55666664431 11234
Q ss_pred ecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChH--HHHHHHHHhcCcCccEEeec
Q 005084 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE--TFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 76 itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~e--aFI~rlyr~~nk~gfIkAfS 153 (715)
.+++-... .+-..+-|.+++--.+. .|...+-...-..+|+||+|.+...-.- --++.+.. +.-.|.-+|
T Consensus 274 ~~~~D~~~---~~~t~~~v~ivSye~ls--~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk---~akhvILLS 345 (689)
T KOG1000|consen 274 DKSSDPLP---DVCTSNTVAIVSYEQLS--LLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLK---VAKHVILLS 345 (689)
T ss_pred ecccCCcc---ccccCCeEEEEEHHHHH--HHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHH---HhhheEEec
Confidence 44332221 11223445555544433 3445555566788999999988653221 12223332 223477889
Q ss_pred CCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccC
Q 005084 154 DKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELERE 195 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~ 195 (715)
-+|.- +-...|-.. ...=+--|+|+||.=-..|-+..
T Consensus 346 GTPav--SRP~elytq---i~avd~tlfp~f~efa~rYCd~k 382 (689)
T KOG1000|consen 346 GTPAV--SRPSELYTQ---IRAVDHTLFPNFHEFAIRYCDGK 382 (689)
T ss_pred CCccc--CCchhhhhh---hhhhcccccccHHHHHHHhcCcc
Confidence 99972 222322222 22334478999999999998654
No 80
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.78 E-value=0.025 Score=68.69 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=105.1
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeec
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEIT 77 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~it 77 (715)
-+|--|++-- +|.+ .-+.-|+||=||| +++.|-. +..-.|.-|.|+-+++.++.+..+.+... -...+..++
T Consensus 82 ~~ydVQliGgl~L~~--G~IaEm~TGEGKT-L~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~ 158 (908)
T PRK13107 82 RHFDVQLLGGMVLDS--NRIAEMRTGEGKT-LTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINV 158 (908)
T ss_pred CcCchHHhcchHhcC--CccccccCCCCch-HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEec
Confidence 4566666666 4555 7789999999999 4554444 44445666999999999987755443321 012466788
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCC-------CCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPT-------SNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~-------~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
+++++.+|.+.|. .-|.+.||-=|.-|+|...+.. ..+.-.|||||+.+.- ..++.|+|.
T Consensus 159 ~~~~~~~r~~~Y~-~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi------------DEArtPLII 225 (908)
T PRK13107 159 AGLGQQEKKAAYN-ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI------------DEARTPLII 225 (908)
T ss_pred CCCCHHHHHhcCC-CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc------------ccCCCceee
Confidence 9999999999995 4999999999999999987543 4466688999988765 445678877
Q ss_pred eecCCCcccccCcchHHHHHHHhc
Q 005084 151 AFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 151 AfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
+=.. |.. ..-|..+..+...|-
T Consensus 226 Sg~~-~~~-~~~y~~~~~~v~~L~ 247 (908)
T PRK13107 226 SGAA-EDS-SELYIKINTLIPNLI 247 (908)
T ss_pred cCCC-ccc-hHHHHHHHHHHHHHH
Confidence 4221 111 123445555555553
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.43 E-value=0.07 Score=63.33 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=71.4
Q ss_pred CeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCeeecCCCChhhHHHhhcCCCE
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEITADLPANHRHTLYSSGQI 94 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~itge~~~~~R~~lY~~ggV 94 (715)
+-+.-|.||=||| +++.|-. ...-.|.-|+|+.||..+..|..+.+.... ...+..++|.+++.+|+..|. .-|
T Consensus 118 G~Iae~~TGeGKT-la~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y~-~dI 195 (656)
T PRK12898 118 GRLAEMQTGEGKT-LTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYG-ADI 195 (656)
T ss_pred CCeeeeeCCCCcH-HHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHcC-CCE
Confidence 3399999999999 5554444 444457889999999999987655443210 124668889999999999995 589
Q ss_pred EEECchHHHHHhhcCCCCC
Q 005084 95 FFVTPRILIVDLLTQRLPT 113 (715)
Q Consensus 95 ~fvTprIL~~DLLs~ri~~ 113 (715)
++.|..=|.-|.|...+-.
T Consensus 196 vygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 196 TYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred EEECCCchhhhhccccccc
Confidence 9999999999999998765
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.29 E-value=0.17 Score=59.60 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCCC-----eEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCC
Q 005084 4 EFHQHIIAELLQEPNG-----GLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLP 73 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d-----~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~ 73 (715)
..|++.+.+++.+-.+ =||-==-|=||| +||.+-.+. -+.|.=+-+++||+-+++| +.+.|...+ ..+
T Consensus 265 ~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKT-vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V 342 (677)
T COG1200 265 NAQKRVIKEILADLASPVPMNRLLQGDVGSGKT-VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG-IRV 342 (677)
T ss_pred HHHHHHHHHHHhhhcCchhhHHHhccCcCCCHH-HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeE
Confidence 4678777776554111 122222399999 777665532 2346667778888888766 344443222 246
Q ss_pred eeecCCCChhhHHHhhcC---C--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc-Cc
Q 005084 74 SEITADLPANHRHTLYSS---G--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR-EA 147 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~~---g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~g 147 (715)
..+||.+..++|+++... | .+++-|=- |+...+..++...+||||-||--= -=-+..|++++ .+
T Consensus 343 ~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHRFGV-----~QR~~L~~KG~~~P 412 (677)
T COG1200 343 ALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHRFGV-----HQRLALREKGEQNP 412 (677)
T ss_pred EEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEeccccccH-----HHHHHHHHhCCCCC
Confidence 789999999998877653 3 45555533 345678899999999999999521 11336778888 79
Q ss_pred cEEeecCCCcc
Q 005084 148 YIRAFSDKPTA 158 (715)
Q Consensus 148 fIkAfSdsP~s 158 (715)
-++-|||+|-.
T Consensus 413 h~LvMTATPIP 423 (677)
T COG1200 413 HVLVMTATPIP 423 (677)
T ss_pred cEEEEeCCCch
Confidence 99999999986
No 83
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.11 E-value=0.1 Score=57.91 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=97.9
Q ss_pred HHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-----HhcC------CCCEEEEecCCHhHHHHHHHHhC-C--CCCCCC
Q 005084 8 HIIAELLQEPNGGLVILSSGLSLPKLIASVLL-----LHSP------SQGTLLLLSSSPNLKSQIIHYLA-P--NAPLLP 73 (715)
Q Consensus 8 ~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-----~y~~------~~~lVlvl~~t~~~~~~i~~~L~-~--~~~~~~ 73 (715)
|.+-=+|+ +.|...|.-||=||| +|-|+. .+.| .+.-||++.|+..+..+++-+.. . ++. .+
T Consensus 249 QaWPI~LQ-G~DliGVAQTgtgKt--L~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~-ks 324 (629)
T KOG0336|consen 249 QAWPILLQ-GIDLIGVAQTGTGKT--LAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGL-KS 324 (629)
T ss_pred cccceeec-CcceEEEEecCCCcC--HHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCc-ce
Confidence 33333454 359999999999999 343433 2222 24568889999999888764432 1 122 33
Q ss_pred eee-cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 74 SEI-TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 74 ~~i-tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
+.+ .|..-.+.=+.+-..--+|.+||+-|.-=...|.|++..||-+|+|||+|..+---|..|-++...-.+.-.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 444 444455666666666778999999987666789999999999999999999999999999998877665443
No 84
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=95.04 E-value=0.058 Score=65.10 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=89.2
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCCeee
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLPSEI 76 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~~~i 76 (715)
-+|--||+.- +|.+ ..+.=|.||=||| ++|.|.. +..-.|.-|-|+.+++.++.+ ++..+...+ ..+..+
T Consensus 80 ~~~dvQlig~l~l~~--G~iaEm~TGEGKT-LvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LG-l~vg~i 155 (796)
T PRK12906 80 RPFDVQIIGGIVLHE--GNIAEMKTGEGKT-LTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLG-LTVGLN 155 (796)
T ss_pred CCchhHHHHHHHHhc--CCcccccCCCCCc-HHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcC-CeEEEe
Confidence 4566677766 4555 5688899999999 6665555 555567788889999988754 444444322 246688
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCC-------CeeEEEEecccccCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTS-------NLAGLIILNTHALTE 129 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~-------~ItgiVV~~AHr~~~ 129 (715)
++++++++|++.| ...|.+.|..=|.-|.|..++-.+ ...-.|||||+.+.=
T Consensus 156 ~~~~~~~~r~~~y-~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi 214 (796)
T PRK12906 156 LNSMSPDEKRAAY-NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI 214 (796)
T ss_pred CCCCCHHHHHHHh-cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee
Confidence 9999999999999 458999999999999999986542 233456788877643
No 85
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=94.62 E-value=0.097 Score=62.43 Aligned_cols=151 Identities=14% Similarity=0.166 Sum_probs=102.2
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCCeee
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLPSEI 76 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~~~i 76 (715)
-+|--|++.- +|.. .-+.=|.||=||| ++|.|.. +..-.|.-|-|+.+++.++.+ ++..+...+ ..+..+
T Consensus 78 r~ydvQlig~l~Ll~--G~VaEM~TGEGKT-LvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LG-Lsvg~i 153 (764)
T PRK12326 78 RPFDVQLLGALRLLA--GDVIEMATGEGKT-LAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALG-LTVGWI 153 (764)
T ss_pred CcchHHHHHHHHHhC--CCcccccCCCCHH-HHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcC-CEEEEE
Confidence 3566666665 3444 5677799999999 5555554 555568889999999998855 343333221 136678
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCC-------CeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTS-------NLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~-------~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
++++++++|++.|. ..|.+.|..=|.-|.|...+-.+ ...-.|||||+.+.= ..++.|+|
T Consensus 154 ~~~~~~~err~aY~-~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI------------DeArtPLi 220 (764)
T PRK12326 154 TEESTPEERRAAYA-CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV------------DEALVPLV 220 (764)
T ss_pred CCCCCHHHHHHHHc-CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee------------ccccCcee
Confidence 99999999999995 68999999999999999887542 233567888887654 23567777
Q ss_pred EeecCCCcccccCcchHHHHHHHh
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
.+= ..|+. .-+..+.++.+.|
T Consensus 221 ISg-~~~~~--~~y~~~~~~v~~L 241 (764)
T PRK12326 221 LAG-STPGE--APRGEIAELVRRL 241 (764)
T ss_pred eeC-CCcch--hHHHHHHHHHHhc
Confidence 652 22222 1344555555554
No 86
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.21 E-value=0.29 Score=56.12 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hh-------cCCCCEEEEecCCHhHHHHHHHHh----CCCCC
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LH-------SPSQGTLLLLSSSPNLKSQIIHYL----APNAP 70 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y-------~~~~~lVlvl~~t~~~~~~i~~~L----~~~~~ 70 (715)
-|++-+-.+|. ++|.||=-.||=||| ++..+=. +- ...|-..||+.||..+..|+-+.+ +...+
T Consensus 163 VQkq~IP~lL~-grD~lV~aQTGSGKT-LAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hW 240 (708)
T KOG0348|consen 163 VQKQAIPVLLE-GRDALVRAQTGSGKT-LAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHW 240 (708)
T ss_pred Hhhcchhhhhc-CcceEEEcCCCCccc-HHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceE
Confidence 47777777787 469999999999999 4443322 11 133678999999999988864433 32222
Q ss_pred -CCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCC
Q 005084 71 -LLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 71 -~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
.+..+|.||-...+..++-+--.|++.||-=|+--|.+ ..|....+.-+|+|||+|+.+-
T Consensus 241 IVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleL 302 (708)
T KOG0348|consen 241 IVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLEL 302 (708)
T ss_pred EeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhc
Confidence 24567888887777777777777889999888766664 6788999999999999999873
No 87
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=93.74 E-value=0.24 Score=60.28 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=89.8
Q ss_pred chHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHH----HH---HHhCCCCCCC
Q 005084 2 VLEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQ----II---HYLAPNAPLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~----i~---~~L~~~~~~~ 72 (715)
|.+|--||+.- +|.+ ..+.=|.||=||| ++|.|.. +..-.|.-|-|+-+++.++.+ ++ ++|.. .
T Consensus 84 ~r~ydVQliGgl~Lh~--G~IAEM~TGEGKT-L~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL----t 156 (939)
T PRK12902 84 MRHFDVQLIGGMVLHE--GQIAEMKTGEGKT-LVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL----S 156 (939)
T ss_pred CCcchhHHHhhhhhcC--CceeeecCCCChh-HHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC----e
Confidence 44677777777 4655 7888899999999 6666655 555568889999999988754 33 33432 3
Q ss_pred CeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCC-------CeeEEEEecccccCC
Q 005084 73 PSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTS-------NLAGLIILNTHALTE 129 (715)
Q Consensus 73 ~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~-------~ItgiVV~~AHr~~~ 129 (715)
+.++++++++.+|+..| ..-|.+.|+.=|.-|.|...+-.+ ..--.|||||+.+.=
T Consensus 157 vg~i~~~~~~~err~aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILI 219 (939)
T PRK12902 157 VGLIQQDMSPEERKKNY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILI 219 (939)
T ss_pred EEEECCCCChHHHHHhc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceee
Confidence 56788899999999999 566999999999999998777642 233467888887754
No 88
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.70 E-value=0.19 Score=58.05 Aligned_cols=178 Identities=19% Similarity=0.186 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHH---HHHH--hc----CCCCEEEEecCCHhHHHHHHHHh-CCC--C--C
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIAS---VLLL--HS----PSQGTLLLLSSSPNLKSQIIHYL-APN--A--P 70 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~---ll~~--y~----~~~~lVlvl~~t~~~~~~i~~~L-~~~--~--~ 70 (715)
-|.+..--+++. .|+|.|.|||=|+| +.-+ |.++ +. ..|-+++++.|+..+..|+-.++ ..+ . .
T Consensus 162 iq~~aipvfl~~-r~~lAcapTGsgKt-laf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~ 239 (593)
T KOG0344|consen 162 IQKQAIPVFLEK-RDVLACAPTGSGKT-LAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS 239 (593)
T ss_pred ccchhhhhhhcc-cceEEeccCCCcch-hhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc
Confidence 345444444553 49999999999998 3332 2221 22 33568899999999998875443 322 1 1
Q ss_pred CCCeeecCCCChhhHHHh--hcCCCEEEECchHHHHHhhcCC--CCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcC
Q 005084 71 LLPSEITADLPANHRHTL--YSSGQIFFVTPRILIVDLLTQR--LPTSNLAGLIILNTHALTENSTETFICRIIKSLNRE 146 (715)
Q Consensus 71 ~~~~~itge~~~~~R~~l--Y~~ggV~fvTprIL~~DLLs~r--i~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~ 146 (715)
.....+.....+.++... =....+...||.=|+-++=.+. ++...|..+|+|||+++.+. +.|+.++++
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~--~~f~~Qla~----- 312 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP--EFFVEQLAD----- 312 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh--hhHHHHHHH-----
Confidence 122333333333332211 1235688899999888888887 99999999999999999987 777777665
Q ss_pred ccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccH
Q 005084 147 AYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYM 210 (715)
Q Consensus 147 gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m 210 (715)
|.....+|.- +..||= --+...|.++.....-...-|-|.+.+..
T Consensus 313 --I~sac~s~~i-----------~~a~FS------at~~~~VEE~~~~i~~~~~~vivg~~~sa 357 (593)
T KOG0344|consen 313 --IYSACQSPDI-----------RVALFS------ATISVYVEEWAELIKSDLKRVIVGLRNSA 357 (593)
T ss_pred --HHHHhcCcch-----------hhhhhh------ccccHHHHHHHHHhhccceeEEEecchhH
Confidence 3333333431 111111 22445566666555556666777777654
No 89
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=93.63 E-value=0.73 Score=49.93 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=101.7
Q ss_pred EEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCC--CCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 21 LVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPL--LPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~--~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
|+==++|.||-+.+|.++. .+.......+.+..++.+..-....|...+.. .+..++ .....+. .=.+.||+|+
T Consensus 66 ~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~-~~~~~~~--~~~~~GvlF~ 142 (303)
T PF13872_consen 66 FLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLN-KFKYGDI--IRLKEGVLFS 142 (303)
T ss_pred EeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceech-hhccCcC--CCCCCCccch
Confidence 3345799999999998887 44333344666777776654444445432211 111111 1111111 1236789999
Q ss_pred CchHHHHHhhc-----CCCC----C--CCee-EEEEecccccCCCCh-------HHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 98 TPRILIVDLLT-----QRLP----T--SNLA-GLIILNTHALTENST-------ETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 98 TprIL~~DLLs-----~ri~----~--~~It-giVV~~AHr~~~~~~-------eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
|=-.|+-.--+ -|+. . .+.. .||+||||++.+.+. -+..+......=++..|.=.|++..+
T Consensus 143 TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 143 TYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred hHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 98887766321 1211 0 2333 568999999988654 23334444445567778888888876
Q ss_pred cccCcchHHHHHHHhccCeeEecc------CCchhh--------------hhhhc-----------cCCCeEEEEEecCC
Q 005084 159 MVSGFAKTERIMKSLFIRKLHLWP------RFQVNV--------------SEELE-----------REPPVVVDVRVPMS 207 (715)
Q Consensus 159 f~~g~~~l~~vmk~L~I~~v~l~P------Rf~~~V--------------~~~l~-----------~~~~~V~Ei~V~lt 207 (715)
+...+. +..++=||. .|..-+ +-.|. -...+..-+.++||
T Consensus 223 ---ep~Nma------Ym~RLGLWG~gtpf~~~~~f~~a~~~gGv~amE~vA~dlKa~G~yiaR~LSf~gvef~~~e~~l~ 293 (303)
T PF13872_consen 223 ---EPRNMA------YMSRLGLWGPGTPFPDFDDFLEAMEKGGVGAMEMVAMDLKARGMYIARQLSFEGVEFEIEEVPLT 293 (303)
T ss_pred ---CCceee------eeeeccccCCCCCCCCHHHHHHHHHhcCchHHHHHHHHHHhcchheeeecccCCceEEEEEecCC
Confidence 433331 233344553 222111 11111 13457777889999
Q ss_pred ccHHHHHH
Q 005084 208 KYMGGIQK 215 (715)
Q Consensus 208 ~~m~~Iq~ 215 (715)
+++.+|-+
T Consensus 294 ~~~~~~Yd 301 (303)
T PF13872_consen 294 PEQIKMYD 301 (303)
T ss_pred HHHHHHhc
Confidence 99988765
No 90
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.31 E-value=0.97 Score=49.81 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=101.5
Q ss_pred EEEec-CCCCHHHHHHHHHHHh--cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 21 LVILS-SGLSLPKLIASVLLLH--SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 21 LvVL~-tGLG~~~Iva~ll~~y--~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
+||-| -|=|||-|+..+++.. ...+..++++-.+.++...+.+.+.... .=...+..+.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~------------------~~~~~~~~~~ 65 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY------------------NPKLKKSDFR 65 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc------------------ccchhhhhhh
Confidence 34443 7999997777777744 3445566666666666777776665421 0011222334
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccCCC-------ChHHHHHHHHHhcCcCccEEeecCCCcccccC----cchH
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALTEN-------STETFICRIIKSLNREAYIRAFSDKPTAMVSG----FAKT 166 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~-------~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g----~~~l 166 (715)
++.-+++++-....+......||||||||+... +...++..+.+. ++ .+..|-|.-..+..+ .+.+
T Consensus 66 ~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~-~k--v~v~f~D~~Q~i~~~e~~~~~~l 142 (352)
T PF09848_consen 66 KPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR-AK--VVVFFYDENQSIRPSEIGTLENL 142 (352)
T ss_pred hhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc-CC--EEEEEEccccEeecccCCCHHHH
Confidence 444444444456667888899999999999883 334677777776 33 566666654443322 2336
Q ss_pred HHHHHHhccCe---eEeccCCch----hhhhhhcc----C---CCe---EEEEEecCCccHHHHHHHHHH
Q 005084 167 ERIMKSLFIRK---LHLWPRFQV----NVSEELER----E---PPV---VVDVRVPMSKYMGGIQKAILE 219 (715)
Q Consensus 167 ~~vmk~L~I~~---v~l~PRf~~----~V~~~l~~----~---~~~---V~Ei~V~lt~~m~~Iq~~l~~ 219 (715)
+++...+.+.. +.|-.-|+. ++...++. . +.. -....+.+.+...++..+|.+
T Consensus 143 ~~~~~~~~~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~~~~~~~~~yd~~~f~~~~~~~~~i~~ 212 (352)
T PF09848_consen 143 EEIAENLGIEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISPKPFNPDENYDFRVFDSPEEMKEAIKE 212 (352)
T ss_pred HHHHHhcCCccccCcCcCcceecCCCHHHHHHHHHHHhccccCccccccCCceeEEEECCHHHHHHHHHH
Confidence 77777777664 244444433 33333331 1 111 134556666666666655443
No 91
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=93.28 E-value=0.29 Score=56.33 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=81.4
Q ss_pred CeEEEecCCCCHHH-----HHHHHHHHh-----------cCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeecCC
Q 005084 19 GGLVILSSGLSLPK-----LIASVLLLH-----------SPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEITAD 79 (715)
Q Consensus 19 d~LvVL~tGLG~~~-----Iva~ll~~y-----------~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~itge 79 (715)
|-|=-.-||=|+|. |++.+++.. ..++.+.||+.||..++.|+...+... ....+..|||.
T Consensus 221 DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GG 300 (731)
T KOG0347|consen 221 DILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGG 300 (731)
T ss_pred hcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeech
Confidence 55555668888872 455444311 022457899999999999988776431 12256789999
Q ss_pred CChhhHHHhhc-CCCEEEECchHHHHHhhcCCC---CCCCeeEEEEecccccCCCChHHHHHHHH
Q 005084 80 LPANHRHTLYS-SGQIFFVTPRILIVDLLTQRL---PTSNLAGLIILNTHALTENSTETFICRII 140 (715)
Q Consensus 80 ~~~~~R~~lY~-~ggV~fvTprIL~~DLLs~ri---~~~~ItgiVV~~AHr~~~~~~eaFI~rly 140 (715)
.+..+-+++-. .+-|+++||-=|--=+-.+.. .+.+|.|+|||||+|.++....+-.-.+.
T Consensus 301 LavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL 365 (731)
T KOG0347|consen 301 LAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLL 365 (731)
T ss_pred hHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHH
Confidence 98766555544 688999999755332222222 47899999999999999877665544433
No 92
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=92.94 E-value=0.82 Score=54.73 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHH---hcCCCCeEEEecCCCCHHHHHHHHHH-HhcC--CCCEEEEecCCHhHHHHHHHHhCCCCCCCCe
Q 005084 1 MVLEFHQHIIAEL---LQEPNGGLVILSSGLSLPKLIASVLL-LHSP--SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPS 74 (715)
Q Consensus 1 ~lL~YQ~~I~~~~---l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~--~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~ 74 (715)
||++||+.-|+=+ ..+...|.+===-|||||.-+..||. +|++ .-+-+|++-|.....+++.++-.=-+...+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEEE
Confidence 5889999988764 44444676666679999988999998 6643 2366888888888888888765421111223
Q ss_pred eecCCCC---------hhh-----HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC-CChHHHHHHH
Q 005084 75 EITADLP---------ANH-----RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE-NSTETFICRI 139 (715)
Q Consensus 75 ~itge~~---------~~~-----R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rl 139 (715)
+..+..+ ..+ +...+..|||+.-|---+-.+ ...+...+=.-+|.||+|++.. ++.-+-.++.
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~islackk 362 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSKISLACKK 362 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccHHHHHHHh
Confidence 3333322 111 223466778777665433221 1222233344578999999965 7777777888
Q ss_pred HHhcCcCccEEeecCCCc
Q 005084 140 IKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 140 yr~~nk~gfIkAfSdsP~ 157 (715)
++..++ ..+|-+|-
T Consensus 363 i~T~~R----iILSGTPi 376 (923)
T KOG0387|consen 363 IRTVHR----IILSGTPI 376 (923)
T ss_pred ccccce----EEeeCccc
Confidence 887766 23455554
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=92.84 E-value=1.1 Score=56.07 Aligned_cols=208 Identities=13% Similarity=0.160 Sum_probs=128.5
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh---c----------CCCCEEEEecCCHhHHHHHHHHhCCCC--C
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH---S----------PSQGTLLLLSSSPNLKSQIIHYLAPNA--P 70 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y---~----------~~~~lVlvl~~t~~~~~~i~~~L~~~~--~ 70 (715)
|=.+...++....|-|+|-|||-|+| -+|.+-.+. . .+.++|-++++.-...++++.+-+-.. .
T Consensus 314 QS~v~daAl~~~EnmLlCAPTGaGKT-NVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~G 392 (1674)
T KOG0951|consen 314 QSKVYDAALRGDENMLLCAPTGAGKT-NVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLG 392 (1674)
T ss_pred HHHHHHHHhcCcCcEEEeccCCCCch-HHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccC
Confidence 44555667776568899999999999 455443322 1 112456666666665566554332211 1
Q ss_pred CCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCC----CCCCCeeEEEEeccccc---CCCChHHHHHHHHHhc
Q 005084 71 LLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQR----LPTSNLAGLIILNTHAL---TENSTETFICRIIKSL 143 (715)
Q Consensus 71 ~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r----i~~~~ItgiVV~~AHr~---~~~~~eaFI~rlyr~~ 143 (715)
..+...||+.+..+.+ ...-+|++.||-= =|.++.. =-...|..+|+||.|-. .|.--|+-++|.+|+.
T Consensus 393 I~V~ElTgD~~l~~~q--ieeTqVIV~TPEK--~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 393 ITVLELTGDSQLGKEQ--IEETQVIVTTPEK--WDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred cEEEEecccccchhhh--hhcceeEEeccch--hhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 2456788887654433 3567899999973 3555544 33447899999999988 7788899999999987
Q ss_pred C---cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHH
Q 005084 144 N---REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEV 220 (715)
Q Consensus 144 n---k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~ 220 (715)
. ....+-|+||+=- ++.-+...+..-. ..++.+ + ++.-..|.+=.-|.|.--...+..|..=-.|
T Consensus 469 es~~e~~RlVGLSATLP----Ny~DV~~Fl~v~~-~glf~f---d----~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLP----NYEDVASFLRVDP-EGLFYF---D----SSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred hhcccCceeeeecccCC----chhhhHHHhccCc-cccccc---C----cccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 3 2568999999966 5677777665433 444444 2 2222223333344555555566666555556
Q ss_pred HHHHHHHHHH
Q 005084 221 MDACLKEMRK 230 (715)
Q Consensus 221 ~~~~l~ELkr 230 (715)
.+..+.-+-+
T Consensus 537 yeKVm~~agk 546 (1674)
T KOG0951|consen 537 YEKVLEHAGK 546 (1674)
T ss_pred HHHHHHhCCC
Confidence 6665544333
No 94
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.68 E-value=0.59 Score=53.49 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=88.2
Q ss_pred CeEEEecCCCCHHHHHHHHH--H-HhcCCC---CEEEEecCCHhHHHHHH---HHhCCCCCCCCeeecCCCChhh-HHHh
Q 005084 19 GGLVILSSGLSLPKLIASVL--L-LHSPSQ---GTLLLLSSSPNLKSQII---HYLAPNAPLLPSEITADLPANH-RHTL 88 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll--~-~y~~~~---~lVlvl~~t~~~~~~i~---~~L~~~~~~~~~~itge~~~~~-R~~l 88 (715)
|-.-|.+||=|||...+.=+ + +|.|.+ ..||||-||..+.-|+- ..|..-....+...-|..+.+. -+.|
T Consensus 220 DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~L 299 (691)
T KOG0338|consen 220 DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVL 299 (691)
T ss_pred hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHH
Confidence 77778899999994444322 2 787643 57999989988764432 2222100112334456666654 4455
Q ss_pred hcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 89 YSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 89 Y~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
-..--|+++||-=|+--|-+ --.++++|.-+|.|||+|..+.+=.--+-++.|--.++-=-.-||++=.
T Consensus 300 Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMt 369 (691)
T KOG0338|consen 300 RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMT 369 (691)
T ss_pred hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhH
Confidence 55678999999888754432 4578899999999999999987655555555554333333455666543
No 95
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=92.56 E-value=0.34 Score=58.92 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=88.6
Q ss_pred HHHHHHHHHH-hcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHH----HHHhCCCCCCCCeeec
Q 005084 4 EFHQHIIAEL-LQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQI----IHYLAPNAPLLPSEIT 77 (715)
Q Consensus 4 ~YQ~~I~~~~-l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i----~~~L~~~~~~~~~~it 77 (715)
+|--|++.-+ |.+ +-+.=|.||=||| ++|.|.. +..-.|.-|-|+-+++.++.+- +......+ ..+.++.
T Consensus 77 ~ydvQlig~l~L~~--G~IaEm~TGEGKT-L~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG-Lsvg~i~ 152 (870)
T CHL00122 77 HFDVQLIGGLVLND--GKIAEMKTGEGKT-LVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLG-LTVGLIQ 152 (870)
T ss_pred CCchHhhhhHhhcC--CccccccCCCCch-HHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcC-CceeeeC
Confidence 4666676663 544 7788899999999 6666555 5555688899999999887553 22222211 1356788
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCC-------CeeEEEEecccccCC
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTS-------NLAGLIILNTHALTE 129 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~-------~ItgiVV~~AHr~~~ 129 (715)
+++++.+|++.|.. .|...|..=|.-|.|..++-.+ ..--.|||||+.+.=
T Consensus 153 ~~~~~~err~aY~~-DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI 210 (870)
T CHL00122 153 EGMSSEERKKNYLK-DITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI 210 (870)
T ss_pred CCCChHHHHHhcCC-CCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee
Confidence 89999999999985 6999999999999999887532 244568899887754
No 96
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=91.93 E-value=1.1 Score=53.52 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.8
Q ss_pred hcCCCEEEECchHHHHHhhc--CCCCCCCeeEEEEecccccCCC
Q 005084 89 YSSGQIFFVTPRILIVDLLT--QRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 89 Y~~ggV~fvTprIL~~DLLs--~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
..+.-|++++...|..|+-. +.+|. ...+||||||++...
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iLP~--~~~lIiDEAH~L~d~ 221 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLLPQ--PDILIVDEAHLFEQN 221 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCCCC--CCEEEEeCCcchHHH
Confidence 35568899999988888644 33333 688999999998653
No 97
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.87 E-value=0.72 Score=48.68 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=104.3
Q ss_pred HHHHHHH-HhcCCCCeEEEecCCCCHHHH--HHHHHHHhcCCC-CEEEEecCCHhHHHHHHHHh----CCCCCCCCeeec
Q 005084 6 HQHIIAE-LLQEPNGGLVILSSGLSLPKL--IASVLLLHSPSQ-GTLLLLSSSPNLKSQIIHYL----APNAPLLPSEIT 77 (715)
Q Consensus 6 Q~~I~~~-~l~~~~d~LvVL~tGLG~~~I--va~ll~~y~~~~-~lVlvl~~t~~~~~~i~~~L----~~~~~~~~~~it 77 (715)
|.+.+-. +|.- |.||-.-.|+|+|.+ +|.|-.+-..+| .-||++--|..+.-||..+. +..+...+.++-
T Consensus 69 qhecipqailgm--dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFf 146 (387)
T KOG0329|consen 69 QHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 146 (387)
T ss_pred hhhhhhHHhhcc--hhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 4444444 4544 888888999999932 233322322223 45677777777777765443 223344677888
Q ss_pred CCCChhhHHHhhcC-CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC-hHHHHHHHHHhcCcCccEEeecCC
Q 005084 78 ADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS-TETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 78 ge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~-~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
|.++.++-+++.++ --|++.||--+..=.-.+.+++..|.+.|+|||+++.+.. ...=+-++||..-..--+--||++
T Consensus 147 GG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 147 GGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred cceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeee
Confidence 99888777766665 5677889977777677899999999999999999988743 333455677765555556667766
Q ss_pred CcccccCcchHHHHHHHh
Q 005084 156 PTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L 173 (715)
-. ..+..||+..
T Consensus 227 ls------keiRpvC~kF 238 (387)
T KOG0329|consen 227 LS------KEIRPVCHKF 238 (387)
T ss_pred cc------hhhHHHHHhh
Confidence 44 2355555543
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=91.36 E-value=3.3 Score=45.65 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhc---CCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH----HHHHHHhCCCCCCCCee
Q 005084 3 LEFHQHIIAELLQ---EPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK----SQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 3 L~YQ~~I~~~~l~---~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~----~~i~~~L~~~~~~~~~~ 75 (715)
=+||+.+...++. +..++||=.-+|-|||.++..-+..--..|+.|.++.|.-.+. .++++....+ .+..
T Consensus 99 s~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~---~I~~ 175 (441)
T COG4098 99 SPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNC---DIDL 175 (441)
T ss_pred ChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccC---Ceee
Confidence 4688888777643 4459999999999999998888774445688888888877543 4566665533 6778
Q ss_pred ecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC--CChHHHHHHHHHhcCcCccEEeec
Q 005084 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE--NSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 76 itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~--~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
+-|+.++.-| +-.+++|.+=|.-= -+-+..|||||.+-.-- +-.--+.++-= ..+.|-..=+|
T Consensus 176 Lyg~S~~~fr------~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylT 240 (441)
T COG4098 176 LYGDSDSYFR------APLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLT 240 (441)
T ss_pred EecCCchhcc------ccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEe
Confidence 8888877544 66777777655320 23467799999865422 22222333333 34578889999
Q ss_pred CCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEE
Q 005084 154 DKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVR 203 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~ 203 (715)
|+|. .++++-+..=.+..+.|=-|||- ..| --|..+|+.
T Consensus 241 ATp~------k~l~r~~~~g~~~~~klp~RfH~---~pL--pvPkf~w~~ 279 (441)
T COG4098 241 ATPT------KKLERKILKGNLRILKLPARFHG---KPL--PVPKFVWIG 279 (441)
T ss_pred cCCh------HHHHHHhhhCCeeEeecchhhcC---CCC--CCCceEEec
Confidence 9997 56888888778888888888883 223 225566663
No 99
>PHA02533 17 large terminase protein; Provisional
Probab=91.30 E-value=0.55 Score=54.87 Aligned_cols=120 Identities=12% Similarity=0.195 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITAD 79 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge 79 (715)
|.+||+.|+..+... .=..+++||.+||+.++|.+.. ....++..|++++++......+-+.+.......|..+...
T Consensus 60 L~p~Q~~i~~~~~~~-R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~ 138 (534)
T PHA02533 60 MRDYQKDMLKIMHKN-RFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPG 138 (534)
T ss_pred CcHHHHHHHHHHhcC-eEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcc
Confidence 457999999986422 2457889999999999987654 2234567888888887766443222211000011111111
Q ss_pred CChhhHHHh-hcCCCEE-EECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 80 LPANHRHTL-YSSGQIF-FVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 80 ~~~~~R~~l-Y~~ggV~-fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
+....+..+ +..|+.+ +.|+. .|-+.|. ...++++||+|-+..
T Consensus 139 i~~~~~~~I~l~NGS~I~~lss~---~~t~rG~----~~~~liiDE~a~~~~ 183 (534)
T PHA02533 139 IVEWNKGSIELENGSKIGAYASS---PDAVRGN----SFAMIYIDECAFIPN 183 (534)
T ss_pred eeecCccEEEeCCCCEEEEEeCC---CCccCCC----CCceEEEeccccCCC
Confidence 111112222 2355555 55543 2333443 557899999997644
No 100
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=91.03 E-value=0.85 Score=55.60 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=84.7
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHH----HHH---HHhCCCCCCCC
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKS----QII---HYLAPNAPLLP 73 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~----~i~---~~L~~~~~~~~ 73 (715)
-+|--||+.- +|.+ ..+.=|.||=||| ++|.|-. +..-.|.-|-|+-.++.++. +++ ++|.. .+
T Consensus 78 r~ydVQliGglvLh~--G~IAEMkTGEGKT-LvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGL----sv 150 (925)
T PRK12903 78 RPYDVQIIGGIILDL--GSVAEMKTGEGKT-ITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGL----SV 150 (925)
T ss_pred CcCchHHHHHHHHhc--CCeeeecCCCCcc-HHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCC----ce
Confidence 3566677766 4555 6678899999999 7777644 55556778888888887763 343 34443 35
Q ss_pred eeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCC-------CCeeEEEEecccccC
Q 005084 74 SEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPT-------SNLAGLIILNTHALT 128 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~-------~~ItgiVV~~AHr~~ 128 (715)
.+++.++++.+|++.|. ..|.+.|..=|--|.|...+-. ....-.||||++.+.
T Consensus 151 G~i~~~~~~~~rr~aY~-~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 151 GINKANMDPNLKREAYA-CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eeeCCCCChHHHHHhcc-CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 67788899999999996 7799999999999999987642 122235667666654
No 101
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.00 E-value=1.3 Score=50.81 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=83.0
Q ss_pred cCCCCeEEEecCCCCHHH-----HHHHHHH-HhcC-------CCCEEEEecCCHhHHHHHHHHh-CC--CCCCCC-eeec
Q 005084 15 QEPNGGLVILSSGLSLPK-----LIASVLL-LHSP-------SQGTLLLLSSSPNLKSQIIHYL-AP--NAPLLP-SEIT 77 (715)
Q Consensus 15 ~~~~d~LvVL~tGLG~~~-----Iva~ll~-~y~~-------~~~lVlvl~~t~~~~~~i~~~L-~~--~~~~~~-~~it 77 (715)
.++.|.+++.+||-|||. |+..++. -+.+ .....++|+||..++.||-+.- +. .....+ .+..
T Consensus 109 ~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~yg 188 (482)
T KOG0335|consen 109 SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYG 188 (482)
T ss_pred ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeC
Confidence 345688999999999992 1222222 1111 1256888899998888763322 11 112233 3444
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC-CChHHHHHHHH
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE-NSTETFICRII 140 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rly 140 (715)
|.--...=..++..--|.|+||-=|..=+-.|.|.++++.-+|+|||.|... ..=+.+|-++.
T Consensus 189 g~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv 252 (482)
T KOG0335|consen 189 GTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIV 252 (482)
T ss_pred CcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHh
Confidence 4322345556778888999999998877777999999999999999999998 44444444433
No 102
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.99 E-value=21 Score=39.56 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=72.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHHh-cC-CCCEEEEecCCHh-----HHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC
Q 005084 19 GGLVILSSGLSLPKLIASVLLLH-SP-SQGTLLLLSSSPN-----LKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y-~~-~~~lVlvl~~t~~-----~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ 91 (715)
+.+|.=++|.|||.++-.++... .. ++-.++.+|+... ....|...+... ..+. . ..+..+ ++.
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~--~~~~--~-~~~~~~---~~~- 127 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH--PPPS--S-GLSFDE---LFD- 127 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC--CCCC--C-CCCHHH---HHH-
Confidence 67777889999998888887732 21 2345566665432 112333333210 0010 0 111111 000
Q ss_pred CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHH---HHHHHHHhcCcCcc-EEeecCCCcccccCcchHH
Q 005084 92 GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET---FICRIIKSLNREAY-IRAFSDKPTAMVSGFAKTE 167 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~ea---FI~rlyr~~nk~gf-IkAfSdsP~sf~~g~~~l~ 167 (715)
.+.+.+.+ ...-..||+||+|.+..+.... .+++.+.+.....+ |.+++..+. +...+. .
T Consensus 128 ----------~~~~~l~~---~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~-~~~~l~--~ 191 (394)
T PRK00411 128 ----------KIAEYLDE---RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT-FLYILD--P 191 (394)
T ss_pred ----------HHHHHHHh---cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc-hhhhcC--H
Confidence 01122221 2344678899999987322222 22344433322233 344444333 322222 2
Q ss_pred HHHHHhccCeeEeccCCchhhhhhhcc
Q 005084 168 RIMKSLFIRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 168 ~vmk~L~I~~v~l~PRf~~~V~~~l~~ 194 (715)
++...++-..|.+.|-...++...|..
T Consensus 192 ~~~s~~~~~~i~f~py~~~e~~~il~~ 218 (394)
T PRK00411 192 RVKSVFRPEEIYFPPYTADEIFDILKD 218 (394)
T ss_pred HHHhcCCcceeecCCCCHHHHHHHHHH
Confidence 333445556777777677777777764
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.95 E-value=4.4 Score=49.12 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcC---CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCH----hHHHHHHHHhCCCCCCCCeeec
Q 005084 5 FHQHIIAELLQE---PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSP----NLKSQIIHYLAPNAPLLPSEIT 77 (715)
Q Consensus 5 YQ~~I~~~~l~~---~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~----~~~~~i~~~L~~~~~~~~~~it 77 (715)
-|++.+..+... ..-.|+==.||=|||.|-..++.-+-..|+=||+|=|.- ...++|+...+ ..+.++.
T Consensus 202 ~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg----~~v~vlH 277 (730)
T COG1198 202 EQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG----AKVAVLH 277 (730)
T ss_pred HHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC----CChhhhc
Confidence 466666666544 236688888999999999999984333355666665544 44455555554 3688999
Q ss_pred CCCChhhHHHhhcC-----CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChH------HHHHHHHHhc-Cc
Q 005084 78 ADLPANHRHTLYSS-----GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE------TFICRIIKSL-NR 145 (715)
Q Consensus 78 ge~~~~~R~~lY~~-----ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~e------aFI~rlyr~~-nk 145 (715)
+..++.+|...|.+ .+|+.-|=--|- .|..+...|||||=|-.+-.... -- +-++|.+ ..
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd-vA~~Ra~~~~ 349 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD-VAVLRAKKEN 349 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHH-HHHHHHHHhC
Confidence 99999999999965 445554433322 58999999999999976432222 11 1234443 33
Q ss_pred CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCc
Q 005084 146 EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQ 185 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~ 185 (715)
-++|+| |++|.- +-.-++.+ =....+.|-.|+.
T Consensus 350 ~pvvLg-SATPSL-----ES~~~~~~-g~y~~~~L~~R~~ 382 (730)
T COG1198 350 APVVLG-SATPSL-----ESYANAES-GKYKLLRLTNRAG 382 (730)
T ss_pred CCEEEe-cCCCCH-----HHHHhhhc-CceEEEEcccccc
Confidence 466666 999973 33333321 1246777777776
No 104
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.36 E-value=1.6 Score=53.85 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhCCC----CCCCC-eee
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLAPN----APLLP-SEI 76 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~----~~~~~-~~i 76 (715)
.-.|+--+..++.. ++-=+|.|||+||| -...++.+| ...|+.++++=||..++.|..+.|... +.... .+.
T Consensus 84 ws~QR~WakR~~rg-~SFaiiAPTGvGKT-Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~y 161 (1187)
T COG1110 84 WSAQRVWAKRLVRG-KSFAIIAPTGVGKT-TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVY 161 (1187)
T ss_pred hHHHHHHHHHHHcC-CceEEEcCCCCchh-HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 34677777777765 36678899999999 444444544 445677777777777776654443221 11111 226
Q ss_pred cCCCChhhHHHhh---cC--CCEEEECchHHH--HHhhcCCCCCCCeeEEEEecccccCCC
Q 005084 77 TADLPANHRHTLY---SS--GQIFFVTPRILI--VDLLTQRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 77 tge~~~~~R~~lY---~~--ggV~fvTprIL~--~DLLs~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
.+.++.+++++.- .+ --|++.|+|.|. .|.|++ -++..|+||.++.+..+
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~----~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK----LKFDFIFVDDVDAILKA 218 (1187)
T ss_pred ccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc----cCCCEEEEccHHHHHhc
Confidence 7888777765443 33 458999999886 455555 45678899998765443
No 105
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=90.34 E-value=2.3 Score=48.70 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHhcCC----CCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC-CCCCCeee
Q 005084 2 VLEFHQHIIAELLQEP----NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN-APLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~----~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~~i 76 (715)
||+||++-+.=+..+. ..|.+.=--|+||| |-+.-|.+....+.--||+.|+-.+.|+..+.-.-. +...+-+.
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKT-IQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~Y 263 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKT-IQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIY 263 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchH-HHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEEE
Confidence 7999999887653321 14666666799999 433322233444555888999999988865432110 11011111
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcC---------------CCCCCCeeEEEEecccccCC-CChHHHHHHHH
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQ---------------RLPTSNLAGLIILNTHALTE-NSTETFICRII 140 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~---------------ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rly 140 (715)
.|.... +-.+-...--|+.-|.-|+..-.-.. .++-=+.--||+||||.+.. .|+-|=.+--.
T Consensus 264 hG~~R~-~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L 342 (791)
T KOG1002|consen 264 HGAKRD-KNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFAL 342 (791)
T ss_pred eccccc-CCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhh
Confidence 111000 00011111222222222322222211 11122345689999999977 45555444444
Q ss_pred HhcCcCccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 141 KSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 141 r~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
+..-+| |+|-+|-. -....+-..++-|.|.
T Consensus 343 ~tt~rw----~LSGTPLQ--NrigElySLiRFL~i~ 372 (791)
T KOG1002|consen 343 ETTYRW----CLSGTPLQ--NRIGELYSLIRFLNIN 372 (791)
T ss_pred Hhhhhh----hccCCcch--hhHHHHHHHHHHHccC
Confidence 444444 57888864 2344555556555554
No 106
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=90.29 E-value=6.1 Score=45.34 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hh----cC-CCCEEEEecCCHhHHHHHHHHh----CCC-CC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LH----SP-SQGTLLLLSSSPNLKSQIIHYL----APN-AP 70 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y----~~-~~~lVlvl~~t~~~~~~i~~~L----~~~-~~ 70 (715)
+-|+.-+..+|.. .|.|+..=||=|+|. +-.+-. ++ .+ ++-.|+++.||..++-|+..++ ..+ ..
T Consensus 107 ~VQ~~ti~pll~g-kDvl~~AKTGtGKTl-AFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 107 PVQQKTIPPLLEG-KDVLAAAKTGTGKTL-AFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred HHHHhhcCccCCC-ccceeeeccCCCcee-eehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 3455555566664 499999999999992 211111 22 22 3457888899988887765443 333 22
Q ss_pred CCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCC-CCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 71 LLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQR-LPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 71 ~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~r-i~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
.-..+|.|+--..+=.+|=..--++++||-=|.-=|-+-. .-..+..++|+|||+|+.+--=+--|.++..--++.--=
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt 264 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQT 264 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcccccee
Confidence 2355777776565656666678899999987754443322 223444689999999999855444444444433343334
Q ss_pred EeecCCCcccccCcchHHHHHHH
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKS 172 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~ 172 (715)
.-|||+-. .+|+.+++.
T Consensus 265 ~LFSAT~~------~kV~~l~~~ 281 (543)
T KOG0342|consen 265 LLFSATQP------SKVKDLARG 281 (543)
T ss_pred eEeeCCCc------HHHHHHHHH
Confidence 66777755 456666553
No 107
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=90.07 E-value=1.9 Score=53.94 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh-cCCCE
Q 005084 18 NGGLVILSSGLSLPKLIASVLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY-SSGQI 94 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iva~ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY-~~ggV 94 (715)
+.|+|==.+|=|||.....+-+ +.. +....||++=-+..+-.|+.+.+..........-..+....-|+.+= ..|||
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 4689999999999944443333 222 33445555555555555555444332111111112222233344333 24699
Q ss_pred EEECchHHHHHhhcC---CCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 95 FFVTPRILIVDLLTQ---RLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 95 ~fvTprIL~~DLLs~---ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
||.|=|=+-.-+... -+.-..|. +|+|||||... .+.....+..=+++.--|||.+|-
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~iv-vI~DEaHRSQ~----G~~~~~~~~~~~~a~~~gFTGTPi 414 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVV-VIIDEAHRSQY----GELAKLLKKALKKAIFIGFTGTPI 414 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEE-EEEechhhccc----cHHHHHHHHHhccceEEEeeCCcc
Confidence 999988776666543 13334444 78999999544 444554455545688899999998
No 108
>COG4889 Predicted helicase [General function prediction only]
Probab=90.01 E-value=0.93 Score=54.86 Aligned_cols=127 Identities=18% Similarity=0.147 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHhc---CCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHH-HHHHhCCCC--------
Q 005084 2 VLEFHQHIIAELLQ---EPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQ-IIHYLAPNA-------- 69 (715)
Q Consensus 2 lL~YQ~~I~~~~l~---~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~-i~~~L~~~~-------- 69 (715)
+-+||+.....+++ ++.-|=+|||.|-|||+-...+...-. ...+|+|.|+-.+..| +++--+...
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala--~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA--AARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh--hhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 35789988887754 334788999999999966555554221 2567777777666544 554322110
Q ss_pred ---------------CCCCeeecCCC--ChhhHHHhhcCC--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC
Q 005084 70 ---------------PLLPSEITADL--PANHRHTLYSSG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 70 ---------------~~~~~~itge~--~~~~R~~lY~~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
...|.-+|.+. -..++...=+.. -|+|+|-|-|..=--..+.-+.-+..||-|||||.+|.
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa 319 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGA 319 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccc
Confidence 01122222111 112222222333 37889988887766667777888999999999999983
No 109
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.97 E-value=9.4 Score=44.15 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh--c------CCCCEEEEecCCHhHHHHHHHHhCC-C--CCCCCe
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH--S------PSQGTLLLLSSSPNLKSQIIHYLAP-N--APLLPS 74 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y--~------~~~~lVlvl~~t~~~~~~i~~~L~~-~--~~~~~~ 74 (715)
|-+++-.+|.. .|-+=|.=||=|+|..+++=+..+ . ..+.+.++|.||..+..||..+.+. + ....+.
T Consensus 250 q~qalptalsg-rdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v 328 (731)
T KOG0339|consen 250 QCQALPTALSG-RDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVV 328 (731)
T ss_pred ccccccccccc-ccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEE
Confidence 55666666664 366777789999996665444322 2 2356778888888888776433321 1 111244
Q ss_pred eecCCC-ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADL-PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~-~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
.+-|.- ..++=..|-...-++++||-=|+-=+-.+-.++..|+.+|+|||.|....--+..+-.+--.-.+.-=-+-||
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFs 408 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFS 408 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEee
Confidence 444444 4566666666778999999887754555889999999999999999977655555443333333444466677
Q ss_pred CCCcccccCcchHHHHHHHhccCeeEec
Q 005084 154 DKPTAMVSGFAKTERIMKSLFIRKLHLW 181 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~I~~v~l~ 181 (715)
++=- .+|++..+..-..-|.+-
T Consensus 409 aTf~------~kIe~lard~L~dpVrvV 430 (731)
T KOG0339|consen 409 ATFK------KKIEKLARDILSDPVRVV 430 (731)
T ss_pred ccch------HHHHHHHHHHhcCCeeEE
Confidence 6532 456666666555555443
No 110
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=89.20 E-value=5 Score=46.98 Aligned_cols=177 Identities=17% Similarity=0.117 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHH---hcCCCCEEEEecCCHhHHHH---HHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLL---HSPSQGTLLLLSSSPNLKSQ---IIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~---y~~~~~lVlvl~~t~~~~~~---i~~~L~~~~~~~~~~ 75 (715)
|||-|---++.=|-++.|-|||-||+=||| +|+-|--+ -...++.+|+++--...+|. |.+.....+ ..+.
T Consensus 217 LlPVQ~laVe~GLLeG~nllVVSaTasGKT-LIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg--lkva 293 (830)
T COG1202 217 LLPVQVLAVEAGLLEGENLLVVSATASGKT-LIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLG--LKVA 293 (830)
T ss_pred ecchhhhhhhhccccCCceEEEeccCCCcc-hHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhccc--ceEE
Confidence 577787777774445679999999999999 77766442 22234455555443333333 443332211 1111
Q ss_pred ec-CCCChhhHH-----HhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC----CChHHHHHHHHHhcCc
Q 005084 76 IT-ADLPANHRH-----TLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE----NSTETFICRIIKSLNR 145 (715)
Q Consensus 76 it-ge~~~~~R~-----~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~----~~~eaFI~rlyr~~nk 145 (715)
|. |-.-.++|. .-=...-|++-|--=+--=|-+| -.+.+|.-+||||.|.+-. .-....|.|+=. --+
T Consensus 294 irVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~-l~~ 371 (830)
T COG1202 294 IRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY-LFP 371 (830)
T ss_pred EEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHH-hCC
Confidence 11 111111111 11123456666665544444456 7899999999999998754 445667766422 233
Q ss_pred CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhh
Q 005084 146 EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEE 191 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~ 191 (715)
..=..++||+-+. -+++-+.|+.+=| +|-+=.+.+..+
T Consensus 372 ~AQ~i~LSATVgN-------p~elA~~l~a~lV-~y~~RPVplErH 409 (830)
T COG1202 372 GAQFIYLSATVGN-------PEELAKKLGAKLV-LYDERPVPLERH 409 (830)
T ss_pred CCeEEEEEeecCC-------hHHHHHHhCCeeE-eecCCCCChhHe
Confidence 4446788988773 4566777777544 454444444433
No 111
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=88.73 E-value=10 Score=42.14 Aligned_cols=183 Identities=17% Similarity=0.202 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH-HHHH--HHhCCCCCCCCeeecCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK-SQII--HYLAPNAPLLPSEITADL 80 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~-~~i~--~~L~~~~~~~~~~itge~ 80 (715)
|.|...+.-.... .+..||||||=|+. +-..|=.+.. .++.||+-|--.++ .||. ..|.+ ....+++++
T Consensus 97 plq~~ain~~ma~-ed~~lil~tgggks-lcyqlpal~a--dg~alvi~plislmedqil~lkqlgi----~as~lnans 168 (695)
T KOG0353|consen 97 PLQLAAINATMAG-EDAFLILPTGGGKS-LCYQLPALCA--DGFALVICPLISLMEDQILQLKQLGI----DASMLNANS 168 (695)
T ss_pred hhHHHHhhhhhcc-CceEEEEeCCCccc-hhhhhhHHhc--CCceEeechhHHHHHHHHHHHHHhCc----chhhccCcc
Confidence 3455555444443 49999999999998 5555544443 57788777655544 4543 23333 355677776
Q ss_pred Chhh--HHH--hhc---CCCEEEECchHHHH-----HhhcCCCCCCCeeEEEEecccccCC-----CChHHHHHHHHHhc
Q 005084 81 PANH--RHT--LYS---SGQIFFVTPRILIV-----DLLTQRLPTSNLAGLIILNTHALTE-----NSTETFICRIIKSL 143 (715)
Q Consensus 81 ~~~~--R~~--lY~---~ggV~fvTprIL~~-----DLLs~ri~~~~ItgiVV~~AHr~~~-----~~~eaFI~rlyr~~ 143 (715)
+.++ |.. +-. +=..+.|||.-+.- .-|...+...-++.|-|||.|--.. .-.|.|+-=+-| +
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr-q 247 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR-Q 247 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH-h
Confidence 6543 332 222 24678999976542 2345667788899999999885322 114455433334 4
Q ss_pred CcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCc
Q 005084 144 NREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSK 208 (715)
Q Consensus 144 nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~ 208 (715)
-+..-|.|+|++..+ .-|..+-+-|.|...+-+. ..+++ +.--.|++.+.+.
T Consensus 248 f~~~~iigltatatn-----~vl~d~k~il~ie~~~tf~-------a~fnr-~nl~yev~qkp~n 299 (695)
T KOG0353|consen 248 FKGAPIIGLTATATN-----HVLDDAKDILCIEAAFTFR-------AGFNR-PNLKYEVRQKPGN 299 (695)
T ss_pred CCCCceeeeehhhhc-----chhhHHHHHHhHHhhheee-------cccCC-CCceeEeeeCCCC
Confidence 456669999999886 4466777888898877663 45543 2223455555544
No 112
>PRK09694 helicase Cas3; Provisional
Probab=88.47 E-value=4.7 Score=49.95 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCEEEECchHHHHHhhcCC-CCCCCe----eEEEEecccccCCCChHHHHHHHHHhcCc-CccEEeecCCCcc
Q 005084 92 GQIFFVTPRILIVDLLTQR-LPTSNL----AGLIILNTHALTENSTETFICRIIKSLNR-EAYIRAFSDKPTA 158 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~r-i~~~~I----tgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~gfIkAfSdsP~s 158 (715)
+-|.+.|.-=+..-+|..+ -..... +.|||||+|-. +.|...++.++.+...+ .+-|.-+||++-.
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~ 482 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPA 482 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCH
Confidence 6888999844443344332 111111 35899999998 44666777777665433 3558889999864
No 113
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=88.14 E-value=3.7 Score=50.68 Aligned_cols=147 Identities=10% Similarity=0.114 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hh-c-CCCCEEEEecCCHhH----HHHHHHHhCCCCCCCCeee
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LH-S-PSQGTLLLLSSSPNL----KSQIIHYLAPNAPLLPSEI 76 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y-~-~~~~lVlvl~~t~~~----~~~i~~~L~~~~~~~~~~i 76 (715)
+++.+|+.-+-.. +..+++=.||.|||.-|-.++. .+ . .+.+-|++=-|..-- .+++..+.... .-..+
T Consensus 176 ~~r~~Il~~i~~~-qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~---~g~~V 251 (924)
T KOG0920|consen 176 KMRDTILDAIEEN-QVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGES---LGEEV 251 (924)
T ss_pred HHHHHHHHHHHhC-ceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccc---cCCee
Confidence 3666777665544 2333344599999998888888 22 2 223445554444322 24444443221 11222
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEeccccc-CCCChHHHHHHHHHhcCcCccEEeecCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHAL-TENSTETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~-~~~~~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
...+-- +++.-. +..+.|+|.-||..=|.. --..+.+|.|||||+|-- .++.---.+++..-.+|++=+|-.+||+
T Consensus 252 GYqvrl-~~~~s~-~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT 328 (924)
T KOG0920|consen 252 GYQVRL-ESKRSR-ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSAT 328 (924)
T ss_pred eEEEee-ecccCC-ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeee
Confidence 222211 111112 388999999999887776 557899999999999944 5555555667888888898889999887
Q ss_pred Cc
Q 005084 156 PT 157 (715)
Q Consensus 156 P~ 157 (715)
-.
T Consensus 329 ~d 330 (924)
T KOG0920|consen 329 LD 330 (924)
T ss_pred cc
Confidence 64
No 114
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=87.90 E-value=3.2 Score=51.60 Aligned_cols=136 Identities=14% Similarity=0.225 Sum_probs=72.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHH-HhcCCC-CEEEEecCCHhHHHHHHHHhC---------CCC---CCCCeeecCCC-Ch
Q 005084 18 NGGLVILSSGLSLPKLIASVLL-LHSPSQ-GTLLLLSSSPNLKSQIIHYLA---------PNA---PLLPSEITADL-PA 82 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iva~ll~-~y~~~~-~lVlvl~~t~~~~~~i~~~L~---------~~~---~~~~~~itge~-~~ 82 (715)
+|-++.|+||=|||.+.+..|. +|..-| ..++++-|+.+-.+.....|. ... .....++++.- ..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 4779999999999987766655 664322 344444455544433222222 110 01223444321 11
Q ss_pred hhHH-------HhhcCC-------CEEEECchHHHHHhh----------cCC-CCCCCeeE----EEEecccccCCCChH
Q 005084 83 NHRH-------TLYSSG-------QIFFVTPRILIVDLL----------TQR-LPTSNLAG----LIILNTHALTENSTE 133 (715)
Q Consensus 83 ~~R~-------~lY~~g-------gV~fvTprIL~~DLL----------s~r-i~~~~Itg----iVV~~AHr~~~~~~e 133 (715)
+.|. ..-... -|.++|-+-|-.|.. .|. .|.+.|.. ||+||+|++-+.-.
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~k- 218 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDNK- 218 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcchH-
Confidence 1111 112111 467888888777644 344 56666653 68999999955211
Q ss_pred HHHHHHHHhcCcCccEEeecCCCc
Q 005084 134 TFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 134 aFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
++ .-..+-|+.. ++=|||+--
T Consensus 219 ~~--~~i~~lnpl~-~lrysAT~~ 239 (986)
T PRK15483 219 FY--QAIEALKPQM-IIRFGATFP 239 (986)
T ss_pred HH--HHHHhcCccc-EEEEeeecC
Confidence 11 2235566655 444999864
No 115
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=87.86 E-value=3.3 Score=50.98 Aligned_cols=160 Identities=11% Similarity=0.143 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCCC----CCCCeeec
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA----PLLPSEIT 77 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~----~~~~~~it 77 (715)
+.|+..+. .+..++..++|+||--|+|+|=--.+- +-.+..++|+-++|++.++.|......... ...-+.+-
T Consensus 514 ~WQ~elLD-svDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~ 592 (1330)
T KOG0949|consen 514 EWQRELLD-SVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLL 592 (1330)
T ss_pred HHHHHHhh-hhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhH
Confidence 35666544 355556899999999999976555544 223346889999999999888765443210 01112222
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhc---CCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecC
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLT---QRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs---~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSd 154 (715)
|..+-+=|..-| ...|.+.-|..|.-=||+ -.--++.|.-||+||.|.+ |+.-+.-+.+..--.-+-| ++|+|+
T Consensus 593 g~ltqEYsinp~-nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~i-G~~ed~l~~Eqll~li~CP-~L~LSA 669 (1330)
T KOG0949|consen 593 GDLTQEYSINPW-NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLI-GNEEDGLLWEQLLLLIPCP-FLVLSA 669 (1330)
T ss_pred hhhhHHhcCCch-hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhc-cccccchHHHHHHHhcCCC-eeEEec
Confidence 333444444444 578999999999999999 6777899999999999986 4444554444444344445 578999
Q ss_pred CCcccccCcchHHHHHH
Q 005084 155 KPTAMVSGFAKTERIMK 171 (715)
Q Consensus 155 sP~sf~~g~~~l~~vmk 171 (715)
+-| .....+.-|+
T Consensus 670 Tig----N~~l~qkWln 682 (1330)
T KOG0949|consen 670 TIG----NPNLFQKWLN 682 (1330)
T ss_pred ccC----CHHHHHHHHH
Confidence 888 4566666666
No 116
>KOG4284 consensus DEAD box protein [Transcription]
Probab=87.47 E-value=1.5 Score=51.57 Aligned_cols=151 Identities=14% Similarity=0.078 Sum_probs=94.3
Q ss_pred CeEEEecCCCCHHHHHHHHHH-HhcCC--CCEEEEecCCHhHHHHHHHHhC-CCC---CCCCeeecCCCChhhHHHhhcC
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LHSPS--QGTLLLLSSSPNLKSQIIHYLA-PNA---PLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y~~~--~~lVlvl~~t~~~~~~i~~~L~-~~~---~~~~~~itge~~~~~R~~lY~~ 91 (715)
|-+|=--.|-|||-|...+.. -..+. .--.+++.||....-||.+... .+. ...+.++-|.++.++-..--++
T Consensus 64 DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~ 143 (980)
T KOG4284|consen 64 DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ 143 (980)
T ss_pred ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh
Confidence 444445569999944443332 11111 2234556666666666665432 111 1245666677665443333456
Q ss_pred CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHH
Q 005084 92 GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIM 170 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vm 170 (715)
.+|++-||-=|.-=.-.|.+++..|..+|+|||+++.. .+----|--+|-.--+.-=|.||||+=-.+. -+.|..+|
T Consensus 144 ~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nL--dn~Lsk~m 221 (980)
T KOG4284|consen 144 TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNL--DNLLSKFM 221 (980)
T ss_pred ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhH--HHHHHHHh
Confidence 77999999766666677899999999999999999987 2333334556666666667999999855432 25566666
Q ss_pred H
Q 005084 171 K 171 (715)
Q Consensus 171 k 171 (715)
+
T Consensus 222 r 222 (980)
T KOG4284|consen 222 R 222 (980)
T ss_pred c
Confidence 5
No 117
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=87.02 E-value=4.2 Score=47.29 Aligned_cols=124 Identities=21% Similarity=0.210 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHH--HHHHHHHHHhc----CCCCE-EEEecCCHhHHHHHHHHhCCCC---CCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLP--KLIASVLLLHS----PSQGT-LLLLSSSPNLKSQIIHYLAPNA---PLLP 73 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~--~Iva~ll~~y~----~~~~l-Vlvl~~t~~~~~~i~~~L~~~~---~~~~ 73 (715)
+-|++.+--+|... |-|=..-||=|+| ++|-.|=++|. +..|+ +|++.||..++-|+-+.|...+ ....
T Consensus 94 eiQ~~~Ip~aL~G~-DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSa 172 (758)
T KOG0343|consen 94 EIQRDTIPMALQGH-DVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSA 172 (758)
T ss_pred HHHHhhcchhccCc-ccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcccccc
Confidence 56777777777753 7777788999998 44444444663 33344 6888999999887766664311 1122
Q ss_pred e-eecCCCChhhHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCC
Q 005084 74 S-EITADLPANHRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 74 ~-~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~ 129 (715)
. +|.|.--..+|.+ -.+=.|+++||-=|.--|-. --+++..+--+|.|||+|+.+
T Consensus 173 GLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 173 GLIIGGKDVKFELER-ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD 229 (758)
T ss_pred ceeecCchhHHHHHh-hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH
Confidence 2 3444443344544 45778999999777666654 457889999999999999987
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=86.47 E-value=7.4 Score=47.97 Aligned_cols=140 Identities=13% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHH----HHHHHHhCCCCCC--C-CeeecCCCC
Q 005084 10 IAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLK----SQIIHYLAPNAPL--L-PSEITADLP 81 (715)
Q Consensus 10 ~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~----~~i~~~L~~~~~~--~-~~~itge~~ 81 (715)
+.+++.+++=.+|+=+||-|||.-+-.+|. ..-..++.|.+.-|....+ .++.++|...... . -.-+...++
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s 137 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVS 137 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCC
Confidence 444566533445555799999998888887 2223457888888887554 4566666542111 1 112233345
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC--CChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE--NSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~--~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
++.| |-++|--||..-++.... ++.++.|||||||.=+= .-.-+++.++........-|.-+||+-.+
T Consensus 138 ~~Tr--------ik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 138 PRTR--------IKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred CCce--------eEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH
Confidence 5554 668999999998888776 88999999999995322 22333444444444546779999998764
No 119
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.34 E-value=15 Score=42.16 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHH-HHHH-Hhc-----CCC-CEEEEecCCHhHHHHHHHHhCC----CCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIA-SVLL-LHS-----PSQ-GTLLLLSSSPNLKSQIIHYLAP----NAPL 71 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva-~ll~-~y~-----~~~-~lVlvl~~t~~~~~~i~~~L~~----~~~~ 71 (715)
+-|-.-+--++.. .|-.|=-+||=|||-..- =+|. +|. +++ --.+++.||..+..||.+.+.. ....
T Consensus 31 pVQa~tIPlll~~-KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l 109 (567)
T KOG0345|consen 31 PVQAATIPLLLKN-KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNL 109 (567)
T ss_pred HHHHhhhHHHhcC-CceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444445544 377788999999992211 1112 442 222 2468899999999887654432 1112
Q ss_pred CCeeecCCCChhhHHHhhc-CCC-EEEECchHHHHHhhcC---CCCCCCeeEEEEecccccCCCChHH---HHHHHHHhc
Q 005084 72 LPSEITADLPANHRHTLYS-SGQ-IFFVTPRILIVDLLTQ---RLPTSNLAGLIILNTHALTENSTET---FICRIIKSL 143 (715)
Q Consensus 72 ~~~~itge~~~~~R~~lY~-~gg-V~fvTprIL~~DLLs~---ri~~~~ItgiVV~~AHr~~~~~~ea---FI~rlyr~~ 143 (715)
....+.|..++++=-+.+. +|. |++.||-=| .||+.. .++......+|+|||+|..+-.=+. .|+...-.+
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQ 188 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQ 188 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccc
Confidence 3445556666655554444 455 899999765 577764 4666688999999999999966444 445555445
Q ss_pred CcCccEEeecCCCc
Q 005084 144 NREAYIRAFSDKPT 157 (715)
Q Consensus 144 nk~gfIkAfSdsP~ 157 (715)
.++|+ |||+-.
T Consensus 189 RRTGL---FSATq~ 199 (567)
T KOG0345|consen 189 RRTGL---FSATQT 199 (567)
T ss_pred ccccc---ccchhh
Confidence 55664 566544
No 120
>PRK14873 primosome assembly protein PriA; Provisional
Probab=85.30 E-value=5.7 Score=47.82 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCC-CCCeeecCCCChhhHHHhhcC---C--CEEEECc
Q 005084 26 SGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAP-LLPSEITADLPANHRHTLYSS---G--QIFFVTP 99 (715)
Q Consensus 26 tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~-~~~~~itge~~~~~R~~lY~~---g--gV~fvTp 99 (715)
+|=|||.+.+.++...-..|+=||+|=|.-.+..|+.+.+..... ..+.++++..++.+|.+.|.. | .|++-|-
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 488999999999983322366688888888887777666654222 458889999999999999965 3 2444443
Q ss_pred hHHHHHhhcCCCCCCCeeEEEEecccccCC------CChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 100 RILIVDLLTQRLPTSNLAGLIILNTHALTE------NSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 100 rIL~~DLLs~ri~~~~ItgiVV~~AHr~~~------~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
--+ =.|+.+..+|||||=|.-.- .|+---++ ++|.+-...-|.--|++|..
T Consensus 249 SAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA-~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 249 SAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA-LLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred eeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHH-HHHHHHcCCcEEEECCCCCH
Confidence 322 25899999999999885422 12211222 44544434334444999974
No 121
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=85.28 E-value=7.3 Score=44.87 Aligned_cols=145 Identities=10% Similarity=0.101 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhc--CC------CCeEEEecCCCCHHHHHHHHHH--Hhc--CCCCEEEEecCCHhHHHHH----HHHhCC
Q 005084 4 EFHQHIIAELLQ--EP------NGGLVILSSGLSLPKLIASVLL--LHS--PSQGTLLLLSSSPNLKSQI----IHYLAP 67 (715)
Q Consensus 4 ~YQ~~I~~~~l~--~~------~d~LvVL~tGLG~~~Iva~ll~--~y~--~~~~lVlvl~~t~~~~~~i----~~~L~~ 67 (715)
|+|+-|+..++. +. +..++.+|||=||+.++|.+.. ++. .++.-|+..+++......+ ...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 689999988772 10 1368999999999988887654 332 2356788888887766432 222222
Q ss_pred CCCCCCeeecCCC-Ch-hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc
Q 005084 68 NAPLLPSEITADL-PA-NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR 145 (715)
Q Consensus 68 ~~~~~~~~itge~-~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk 145 (715)
.+. .-......+ .. .++...-..|++|-+-++ -.+..+=-..+++|+||+|.......+.-+..-.. ..+
T Consensus 81 ~~~-l~~~~~~~~~~~~~~~i~~~~~~s~~~~~s~------~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~-~r~ 152 (477)
T PF03354_consen 81 SPE-LRKRKKPKIIKSNKKEIEFPKTGSFFKALSS------DADSLDGLNPSLAIFDELHAHKDDELYDALESGMG-ARP 152 (477)
T ss_pred Chh-hccchhhhhhhhhceEEEEcCCCcEEEEEec------CCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc-cCC
Confidence 110 000010111 11 112122223555543332 14555566779999999999877544443333222 246
Q ss_pred CccEEeecCCC
Q 005084 146 EAYIRAFSDKP 156 (715)
Q Consensus 146 ~gfIkAfSdsP 156 (715)
++++..+|-..
T Consensus 153 ~pl~~~ISTag 163 (477)
T PF03354_consen 153 NPLIIIISTAG 163 (477)
T ss_pred CceEEEEeCCC
Confidence 88999987643
No 122
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=84.81 E-value=19 Score=45.58 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=139.6
Q ss_pred chHHHHHHH---HHHhcCCCCeEEEecCCCCHHHH-HHHHHHHhcCCC---CEEEEecCCHhHHHHHHHHhCCCCCCCCe
Q 005084 2 VLEFHQHII---AELLQEPNGGLVILSSGLSLPKL-IASVLLLHSPSQ---GTLLLLSSSPNLKSQIIHYLAPNAPLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~---~~~l~~~~d~LvVL~tGLG~~~I-va~ll~~y~~~~---~lVlvl~~t~~~~~~i~~~L~~~~~~~~~ 74 (715)
|-+||+.-+ ..++.++-||++.=--|||||.- |+.|-|+.|..+ .-.+|++++.-++=-+ ++=.-| +.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEM-ElKRwc--PglK 692 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEM-ELKRWC--PGLK 692 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhH-HHhhhC--Ccce
Confidence 457887654 45677766888877789999954 445555777554 4566777766543111 111112 3567
Q ss_pred eecCCCChhhHH---HhhcCCCEE--EECchHHH-HHhhcCCCCCCCeeEEEEecccccCCCChHHH-HHHHHHhcCcCc
Q 005084 75 EITADLPANHRH---TLYSSGQIF--FVTPRILI-VDLLTQRLPTSNLAGLIILNTHALTENSTETF-ICRIIKSLNREA 147 (715)
Q Consensus 75 ~itge~~~~~R~---~lY~~ggV~--fvTprIL~-~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaF-I~rlyr~~nk~g 147 (715)
++|.==+.++|+ +=|.+--.| ||||=-++ -|+-+=+ -..--++|+||||+|.+--+--+ .+==|+.+.
T Consensus 693 ILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk--rkrWqyLvLDEaqnIKnfksqrWQAllnfnsqr--- 767 (1958)
T KOG0391|consen 693 ILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK--RKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQR--- 767 (1958)
T ss_pred EeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH--hhccceeehhhhhhhcchhHHHHHHHhccchhh---
Confidence 777554554443 558776654 66775554 4554421 22346899999999988332222 121222222
Q ss_pred cEEeecCCCcccccCcchHHHHHHHhccCeeEecc---CCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHH
Q 005084 148 YIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWP---RFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDAC 224 (715)
Q Consensus 148 fIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~P---Rf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~ 224 (715)
=+-+|++|-. -.+..|=..|- ||.| -.|-+.+++|.+-=...+|=...... ..-.-|-.++...
T Consensus 768 -RLLLtgTPLq--NslmELWSLmh-------FLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~---klV~RLHkVlrPf 834 (1958)
T KOG0391|consen 768 -RLLLTGTPLQ--NSLMELWSLMH-------FLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNH---KLVIRLHKVLRPF 834 (1958)
T ss_pred -eeeecCCchh--hHHHHHHHHHH-------HhhchhhhhhhhHHHHhcCcchhhcccchhhch---HHHHHHHHHhHHH
Confidence 2567888864 12233333333 2333 23444455553211122333322221 1122233333322
Q ss_pred -HHHHHHcCCCCCCccchhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 005084 225 -LKEMRKTNKVDVEDLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRV 302 (715)
Q Consensus 225 -l~ELkr~n~ld~~~~t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~ 302 (715)
|+.||+ .||.-|-+....+| .-++|.+.+-|..|.+.=+.--+.|-+...++-++.|=.|+.
T Consensus 835 iLRRlK~---------dVEKQlpkKyEHvv-------~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrK 897 (1958)
T KOG0391|consen 835 ILRRLKR---------DVEKQLPKKYEHVV-------KCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRK 897 (1958)
T ss_pred HHHHHHH---------HHHHhcchhhhhhe-------eeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHH
Confidence 333332 12333333233332 245677888888888877776777777777777777766653
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=83.02 E-value=1.1e+02 Score=39.50 Aligned_cols=146 Identities=12% Similarity=0.095 Sum_probs=82.9
Q ss_pred CchHHHHHHHHHH-----hcCCCCeEEEecCCCCHHHHHHHHHH--HhcCC------CCE-EEEecCCHhHHHHHHHHhC
Q 005084 1 MVLEFHQHIIAEL-----LQEPNGGLVILSSGLSLPKLIASVLL--LHSPS------QGT-LLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 1 ~lL~YQ~~I~~~~-----l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~------~~l-Vlvl~~t~~~~~~i~~~L~ 66 (715)
||-+||++-+.=+ +.= +|.+|=--|||||--...++. .|... .-+ .|++-|+...-.|-.|.=+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~L--HGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKL--HGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcc--cceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHH
Confidence 4668999876654 333 788888899999966666666 44321 122 5555555543333221111
Q ss_pred CCCCCCCeeecCCCChhhHHHh---hcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCCC--hHHHHHHHH
Q 005084 67 PNAPLLPSEITADLPANHRHTL---YSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTENS--TETFICRII 140 (715)
Q Consensus 67 ~~~~~~~~~itge~~~~~R~~l---Y~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~--~eaFI~rly 140 (715)
.. +...++..--+|.+|..+ |++.-|++.+--|+.||..- ..++. --+|+||.|=+...- .+.+ +.-.
T Consensus 1053 f~--pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~w---NYcVLDEGHVikN~ktkl~ka-vkqL 1126 (1549)
T KOG0392|consen 1053 FF--PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDW---NYCVLDEGHVIKNSKTKLTKA-VKQL 1126 (1549)
T ss_pred hc--chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhccc---ceEEecCcceecchHHHHHHH-HHHH
Confidence 11 112222222255666655 44459999999999977653 22333 357899999776632 2233 2333
Q ss_pred HhcCcCccEEeecCCCcc
Q 005084 141 KSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 141 r~~nk~gfIkAfSdsP~s 158 (715)
|...+ +-+|-+|..
T Consensus 1127 ~a~hR----LILSGTPIQ 1140 (1549)
T KOG0392|consen 1127 RANHR----LILSGTPIQ 1140 (1549)
T ss_pred hhcce----EEeeCCCcc
Confidence 33333 556888874
No 124
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=82.59 E-value=4.6 Score=49.61 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCCCeEEE-ecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhH-HHHHHHHhCCCCCCCCeeecCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVI-LSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNL-KSQIIHYLAPNAPLLPSEITADL 80 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvV-L~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~-~~~i~~~L~~~~~~~~~~itge~ 80 (715)
.||++.+..+... +.++| ..|--||| +||-.-. +...-+...+--.|-+.+ +|.|.++-..- .+...+||++
T Consensus 300 ~FQk~Ai~~lerg--~SVFVAAHTSAGKT-vVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF--~DvgLlTGDv 374 (1248)
T KOG0947|consen 300 TFQKEAIYHLERG--DSVFVAAHTSAGKT-VVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETF--GDVGLLTGDV 374 (1248)
T ss_pred HHHHHHHHHHHcC--CeEEEEecCCCCcc-hHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhc--cccceeecce
Confidence 5899988876665 55554 66899999 7775544 221112223323333333 35566554321 2455899998
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
..+. ++.+++.|.-||-+=|-.|.==+.+|.-+|+||.|=+-+
T Consensus 375 qinP------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND 417 (1248)
T KOG0947|consen 375 QINP------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND 417 (1248)
T ss_pred eeCC------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc
Confidence 6543 588999999999998888887788899999999998765
No 125
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=82.52 E-value=18 Score=32.56 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=24.1
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHh
Q 005084 20 GLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN 56 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~ 56 (715)
.+++=++|-|||.++..+...+...+..|+.+++...
T Consensus 22 v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 3444489999998777777754433455666665543
No 126
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=81.97 E-value=9.5 Score=47.01 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=95.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHHH---hcCCCCEEEEecCCHhHHHHHHH---HhCCCCCCCCeeecCCCChhhHHHhh
Q 005084 16 EPNGGLVILSSGLSLPKLIASVLLL---HSPSQGTLLLLSSSPNLKSQIIH---YLAPNAPLLPSEITADLPANHRHTLY 89 (715)
Q Consensus 16 ~~~d~LvVL~tGLG~~~Iva~ll~~---y~~~~~lVlvl~~t~~~~~~i~~---~L~~~~~~~~~~itge~~~~~R~~lY 89 (715)
+.+|.+.-+||+=|+| +||.++.+ -+-..+..|+|+.-.+..+.+.+ +....+ -.+....|..+|.+|.+
T Consensus 239 e~~nliys~Pts~gkt-lvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G-~~ve~y~g~~~p~~~~k-- 314 (1008)
T KOG0950|consen 239 ERKNLIYSLPTSAGKT-LVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLG-FPVEEYAGRFPPEKRRK-- 314 (1008)
T ss_pred cccceEEeCCCccchH-HHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccC-CcchhhcccCCCCCccc--
Confidence 4569999999999999 67766552 23335556666665555444332 111111 12344558888877654
Q ss_pred cCCCEEEECc---hHHHHHhhc-CCCCCCCeeEEEEecccccCCCC----hHHHHHH-HHHhcCcCccEEeecCCCcccc
Q 005084 90 SSGQIFFVTP---RILIVDLLT-QRLPTSNLAGLIILNTHALTENS----TETFICR-IIKSLNREAYIRAFSDKPTAMV 160 (715)
Q Consensus 90 ~~ggV~fvTp---rIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~----~eaFI~r-lyr~~nk~gfIkAfSdsP~sf~ 160 (715)
.--|+++|- ..|+|=|+. |+ ++.+..|||||-|-+-+.+ -|.++.+ +|...+...-|-|+|++=.
T Consensus 315 -~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~--- 388 (1008)
T KOG0950|consen 315 -RESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIP--- 388 (1008)
T ss_pred -ceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccC---
Confidence 456777773 456665554 55 5667889999999876533 4555555 4443333334999999877
Q ss_pred cCcchHHHHHHHhccCeeEeccC-Cch
Q 005084 161 SGFAKTERIMKSLFIRKLHLWPR-FQV 186 (715)
Q Consensus 161 ~g~~~l~~vmk~L~I~~v~l~PR-f~~ 186 (715)
+.+-|+..+. -++||. |++
T Consensus 389 -N~~lL~~~L~------A~~y~t~fRP 408 (1008)
T KOG0950|consen 389 -NNSLLQDWLD------AFVYTTRFRP 408 (1008)
T ss_pred -ChHHHHHHhh------hhheecccCc
Confidence 4566666666 567765 655
No 127
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=81.66 E-value=1.2 Score=40.88 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=17.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHHh
Q 005084 19 GGLVILSSGLSLPKLIASVLLLH 41 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y 41 (715)
-.+|+=++|.|||.++..++..+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 45666789999999999998854
No 128
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=81.57 E-value=2.4 Score=52.47 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=85.6
Q ss_pred chHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHH----HHH---HHhCCCCCCC
Q 005084 2 VLEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKS----QII---HYLAPNAPLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~----~i~---~~L~~~~~~~ 72 (715)
|-+|--|++-- +|.+ .-+.=|+||=||| ++|.|-. +..=+|.-|-|+-.++.++. +++ ++|.. .
T Consensus 137 m~~ydVQLiGgivLh~--G~IAEM~TGEGKT-Lvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGL----t 209 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHS--GKISEMATGEGKT-LVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGL----S 209 (1025)
T ss_pred ccccchHHhhhHHhhc--CCccccCCCCCcc-hHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCC----e
Confidence 45677777777 4655 7788899999999 6666554 55445666777878887763 333 34443 3
Q ss_pred CeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCC-------eeEEEEecccccC
Q 005084 73 PSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSN-------LAGLIILNTHALT 128 (715)
Q Consensus 73 ~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~-------ItgiVV~~AHr~~ 128 (715)
+.+|..+.++.+|++.|.. -|.+.|..=|--|.|...+-.+. .--.||||++.+.
T Consensus 210 Vg~i~~~~~~~~Rr~aY~~-DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 210 VGVILNTMRPEERREQYLC-DITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eeeeCCCCCHHHHHHhCCC-cceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 5567788899999999966 59999999999999998876532 2335778877653
No 129
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=81.38 E-value=6.4 Score=39.25 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCC-eEEEecCCCCHHHHHHHHHH-Hh-------cCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAELLQEPNG-GLVILSSGLSLPKLIASVLL-LH-------SPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d-~LvVL~tGLG~~~Iva~ll~-~y-------~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+.|++.+..++..+ . +||-=|.|=|||.+++.++. ++ ...++.||++.++...+..+.+.|.
T Consensus 4 ~~Q~~Ai~~~~~~~-~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 4 ESQREAIQSALSSN-GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp HHHHHHHHHHCTSS-E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 57999999888872 3 56656679999999998888 42 4668899999999988776655543
No 130
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.79 E-value=3.6 Score=45.51 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hh-cCCCCEEEEecCCHhHHHHHHHHhCCCCC---CCCeeec
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LH-SPSQGTLLLLSSSPNLKSQIIHYLAPNAP---LLPSEIT 77 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~~---~~~~~it 77 (715)
+-|+..+-.+|+. .|+|=+.-||=|+|.-+|.=+. +. +|.|...+++-||..+.-||.|.+...+. ....+|-
T Consensus 32 piQ~~cIpkILeG-rdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~viv 110 (442)
T KOG0340|consen 32 PIQQACIPKILEG-RDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIV 110 (442)
T ss_pred chHhhhhHHHhcc-cccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEE
Confidence 4577778888875 5999999999999966664333 44 35577889999999999888776643322 1344555
Q ss_pred CCC-ChhhHHHhhcCCCEEEECchHHHHHhhcCCCC-----CCCeeEEEEecccccCCC
Q 005084 78 ADL-PANHRHTLYSSGQIFFVTPRILIVDLLTQRLP-----TSNLAGLIILNTHALTEN 130 (715)
Q Consensus 78 ge~-~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~-----~~~ItgiVV~~AHr~~~~ 130 (715)
|.+ -..+=..|-..--|+++||-=|. |+++|..+ ...+.-+|+|||.|+...
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRla-d~l~sn~~~~~~~~~rlkflVlDEADrvL~~ 168 (442)
T KOG0340|consen 111 GGTDMIMQAAILSDRPHVVVATPGRLA-DHLSSNLGVCSWIFQRLKFLVLDEADRVLAG 168 (442)
T ss_pred ccHHHhhhhhhcccCCCeEecCccccc-cccccCCccchhhhhceeeEEecchhhhhcc
Confidence 554 34555667777889999997764 66666622 356778999999999774
No 131
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=80.27 E-value=82 Score=38.65 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=63.3
Q ss_pred CeEEEecCCCCHHHHHHHHHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh--hcC---
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL--YSS--- 91 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l--Y~~--- 91 (715)
+|.+.=--|||||.-|-.|+. ++. ...|--||+-|+..+..|++++-+-|+. +++...-=+..+|+++ +..
T Consensus 420 ~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~ 497 (941)
T KOG0389|consen 420 NGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPS--LKVEPYYGSQDERRELRERIKKNK 497 (941)
T ss_pred cceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCc--eEEEeccCcHHHHHHHHHHHhccC
Confidence 453333369999976666766 443 1123344455566666788887776643 3333322233555543 112
Q ss_pred --CCEEEECchHHHH-----HhhcCCCCCCCeeEEEEecccccCCCChHHH
Q 005084 92 --GQIFFVTPRILIV-----DLLTQRLPTSNLAGLIILNTHALTENSTETF 135 (715)
Q Consensus 92 --ggV~fvTprIL~~-----DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaF 135 (715)
=-|++.|-++... -+|. --....+|+||+|-+...-+|-|
T Consensus 498 ~~ydVllTTY~la~~~kdDRsflk----~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 498 DDYDVLLTTYNLAASSKDDRSFLK----NQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred CCccEEEEEeecccCChHHHHHHH----hccccEEEecchhhhhccchHHH
Confidence 2377777766541 1222 23567899999998887666554
No 132
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=80.22 E-value=11 Score=44.65 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEec-CCCCHHHHHHHHHH--HhcCCCCEEEEecCCHh----HHHHHHHHhCCC-CCC-C-C
Q 005084 4 EFHQHIIAELLQEPNGGLVILS-SGLSLPKLIASVLL--LHSPSQGTLLLLSSSPN----LKSQIIHYLAPN-APL-L-P 73 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~-tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~----~~~~i~~~L~~~-~~~-~-~ 73 (715)
+|-.+|+..+-.. ..|||.| ||-||+.-|-.+|. -|+..|+ |-+--|..- +..+..+++... +.. . .
T Consensus 54 ~~r~~il~~ve~n--qvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 54 KYRDQILYAVEDN--QVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHC--CEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 4667888886655 7777776 99999999999988 4554444 433333332 234555555432 111 1 1
Q ss_pred eeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC-CC-hHHHHHHHHHhcCcCccEEe
Q 005084 74 SEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE-NS-TETFICRIIKSLNREAYIRA 151 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~-~eaFI~rlyr~~nk~gfIkA 151 (715)
.-+...++.+ -.|-|.|--+|..-++... .++..+.||+||||-=+= +- .-.++-++.+.+ +.-.+.-
T Consensus 131 IRFed~ts~~--------TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIi 200 (674)
T KOG0922|consen 131 IRFEDSTSKD--------TRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLII 200 (674)
T ss_pred EEecccCCCc--------eeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEE
Confidence 1122222332 3578899999999998876 377899999999995332 22 222333344333 3334556
Q ss_pred ecCCCcc
Q 005084 152 FSDKPTA 158 (715)
Q Consensus 152 fSdsP~s 158 (715)
+||+-.+
T Consensus 201 mSATlda 207 (674)
T KOG0922|consen 201 MSATLDA 207 (674)
T ss_pred EeeeecH
Confidence 6666543
No 133
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=80.13 E-value=5.5 Score=49.73 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=100.1
Q ss_pred chHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHH----HHH---HHhCCCCCCC
Q 005084 2 VLEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKS----QII---HYLAPNAPLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~----~i~---~~L~~~~~~~ 72 (715)
|.+|--|++-- +|.+ .-+.=|.||=||| ++|.|-. +..=+|.=|-|+-.++.++. +++ ++|.. .
T Consensus 168 m~~yDVQliGgivLh~--G~IAEM~TGEGKT-LvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGL----s 240 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQ--GKIAEMATGEGKT-LVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGL----S 240 (1112)
T ss_pred CcccchHHhhhhhhcC--CceeeecCCCCch-hHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCC----c
Confidence 45677788777 4655 7788899999999 6666554 44444666777777777763 333 44443 2
Q ss_pred CeeecC-CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCC-------CeeEEEEecccccCCCChHHHHHHHHHhcC
Q 005084 73 PSEITA-DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTS-------NLAGLIILNTHALTENSTETFICRIIKSLN 144 (715)
Q Consensus 73 ~~~itg-e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~-------~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n 144 (715)
+.+|.. +.++.+|++.|.. -|...|..=|--|.|...+-.+ ..--.||||++.+.= ..+
T Consensus 241 vg~i~~~~~~~~~rr~aY~~-DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILI------------DEA 307 (1112)
T PRK12901 241 VDCIDKHQPNSEARRKAYNA-DITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLI------------DDA 307 (1112)
T ss_pred eeecCCCCCCHHHHHHhCCC-cceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhh------------ccc
Confidence 445655 6789999999965 8899999999999999887652 233456777776543 567
Q ss_pred cCccEEeecCCCcccccCcchHHHHHHHh
Q 005084 145 REAYIRAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 145 k~gfIkAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
+.|+|.+= ..|..-..-|..+...++.|
T Consensus 308 RTPLIISG-p~~~~~~~~y~~~~~~V~~L 335 (1112)
T PRK12901 308 RTPLIISG-PVPKGDDQEFEELKPRVERL 335 (1112)
T ss_pred cCcEEEeC-CCCCccHHHHHHHHHHHHHH
Confidence 88988752 22332112344555555544
No 134
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=79.81 E-value=5.4 Score=47.93 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHH-HHHHHHhCCCCCCCCeeecCCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLK-SQIIHYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~-~~i~~~L~~~~~~~~~~itge~~ 81 (715)
+||..-+ .|++.+.+-||-.=|--||| +||..-..- -..+..|+--.|-+.+- |..++.+.+- .++..+||+++
T Consensus 132 pFQ~~aI-~Cidr~eSVLVSAHTSAGKT-VVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF--~DVGLMTGDVT 207 (1041)
T KOG0948|consen 132 PFQSTAI-KCIDRGESVLVSAHTSAGKT-VVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEF--KDVGLMTGDVT 207 (1041)
T ss_pred chHhhhh-hhhcCCceEEEEeecCCCcc-hHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHh--cccceeeccee
Confidence 5776644 56777778899999999999 777665522 12245666666655554 5577666542 36888999975
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
.+- ..++.+.|.-||-+=|-.|-==...|.=+|+||.|-..+
T Consensus 208 InP------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 208 INP------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred eCC------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc
Confidence 432 578999999999999999998899999999999996554
No 135
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=79.40 E-value=6.5 Score=49.49 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHh---cCCCCeEEEecCCCCHHHHHHHHHH-Hhc---CCCCEEEEecCCH--hHHHHHHHHhCCCCCCC
Q 005084 2 VLEFHQHIIAELL---QEPNGGLVILSSGLSLPKLIASVLL-LHS---PSQGTLLLLSSSP--NLKSQIIHYLAPNAPLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~~l---~~~~d~LvVL~tGLG~~~Iva~ll~-~y~---~~~~lVlvl~~t~--~~~~~i~~~L~~~~~~~ 72 (715)
|-+||.+-+.=++ ..++||.+.==-|||+|.---.||. +++ -.|..++|++-+- .=..-|..-. . ..
T Consensus 371 LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~---mn 446 (1373)
T KOG0384|consen 371 LRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-D---MN 446 (1373)
T ss_pred hhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-h---hc
Confidence 4578876555432 2423555444469999954445555 332 1233333333322 2222232222 1 24
Q ss_pred CeeecCCCChhhH---HHhhcCCC-------EEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCC-CChHHHHHHHH
Q 005084 73 PSEITADLPANHR---HTLYSSGQ-------IFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTE-NSTETFICRII 140 (715)
Q Consensus 73 ~~~itge~~~~~R---~~lY~~gg-------V~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rly 140 (715)
+.+..|+..+.+= .++|.+++ ++..|=-++.-|--- +.|+ -..++||||||+.. .|.-.-.+..|
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~---w~~~~vDeahrLkN~~~~l~~~l~~f 523 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIP---WRYLLVDEAHRLKNDESKLYESLNQF 523 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCC---cceeeecHHhhcCchHHHHHHHHHHh
Confidence 6777888765432 25555553 344454555444211 2233 36789999999984 44444447777
Q ss_pred HhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccC---------------------------Cchhhhhhhc
Q 005084 141 KSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPR---------------------------FQVNVSEELE 193 (715)
Q Consensus 141 r~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PR---------------------------f~~~V~~~l~ 193 (715)
+-.|+ +-+|-+|.. -...-|-..+.-|.=.+...|+. --.||.++|.
T Consensus 524 ~~~~r----llitgTPlQ--NsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 524 KMNHR----LLITGTPLQ--NSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred cccce----eeecCCCcc--ccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 77776 456777754 01111111122222233333333 3345555553
Q ss_pred cCCCeEEEEEecCCccHHHHHHHHHH
Q 005084 194 REPPVVVDVRVPMSKYMGGIQKAILE 219 (715)
Q Consensus 194 ~~~~~V~Ei~V~lt~~m~~Iq~~l~~ 219 (715)
... + .-|+|.||+--++...+|++
T Consensus 598 ~k~-E-~IlrVels~lQk~yYk~ILt 621 (1373)
T KOG0384|consen 598 PKE-E-TILRVELSDLQKQYYKAILT 621 (1373)
T ss_pred CCc-c-eEEEeehhHHHHHHHHHHHH
Confidence 322 2 23689999988887777774
No 136
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=78.75 E-value=17 Score=44.45 Aligned_cols=156 Identities=8% Similarity=0.053 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhcCCCCe---EEEecCCCCHHHHHHHHHH-HhcC---CCCEEEEecCCHhHHHHHHHHhCCCCCCCCee
Q 005084 3 LEFHQHIIAELLQEPNGG---LVILSSGLSLPKLIASVLL-LHSP---SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~---LvVL~tGLG~~~Iva~ll~-~y~~---~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~ 75 (715)
.++|..++..++.....+ .+..|||-|||.+.+.+.. .... ..+++|.+-|.....+.+...+..-. ....+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~-~~~~~ 275 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIF-GLFSV 275 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhh-ccccc
Confidence 578999999876543333 5668999999954444433 2222 35666666666655544332222100 01111
Q ss_pred e----cCCCCh----hh-H---HH--hhc-CCCEEEECchHHHHHhhcCCCCCCC--------eeEEEEecccccCCCCh
Q 005084 76 I----TADLPA----NH-R---HT--LYS-SGQIFFVTPRILIVDLLTQRLPTSN--------LAGLIILNTHALTENST 132 (715)
Q Consensus 76 i----tge~~~----~~-R---~~--lY~-~ggV~fvTprIL~~DLLs~ri~~~~--------ItgiVV~~AHr~~~~~~ 132 (715)
+ .++... .. . .. ++. -+.+++.++-+--.|.+..+.-+.. -+.+|+||+|-......
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 1 111100 00 0 00 001 1233333333333444442221111 25679999999988734
Q ss_pred HHHHHH-HHHhcCcCccEEeecCCCccc
Q 005084 133 ETFICR-IIKSLNREAYIRAFSDKPTAM 159 (715)
Q Consensus 133 eaFI~r-lyr~~nk~gfIkAfSdsP~sf 159 (715)
-++++. ++....-.+-|.=+||++-.+
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~ 383 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPF 383 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHH
Confidence 444444 555444566788999998864
No 137
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.30 E-value=3.7 Score=47.15 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcC--------CCCeEEEecCCCCHHHHHHHHHH---HhcCC-CC-EEEEecCCHhHHHHHHHHhCC-C-
Q 005084 4 EFHQHIIAELLQE--------PNGGLVILSSGLSLPKLIASVLL---LHSPS-QG-TLLLLSSSPNLKSQIIHYLAP-N- 68 (715)
Q Consensus 4 ~YQ~~I~~~~l~~--------~~d~LvVL~tGLG~~~Iva~ll~---~y~~~-~~-lVlvl~~t~~~~~~i~~~L~~-~- 68 (715)
+-|..++-.+|.. +.|-.|-.|||=||| +...+=. +.+.+ .. ..+|+=|+..++-|+-..+.. +
T Consensus 162 PVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKT-LaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~ 240 (620)
T KOG0350|consen 162 PVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKT-LAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNS 240 (620)
T ss_pred chHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCce-eeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhcc
Confidence 3455555554332 347788999999999 4443322 33322 22 235555666666665444322 1
Q ss_pred CCC-CCeeecCCCCh--hhHHHhhcCC----CEEEECchHHHHHhh-cCCCCCCCeeEEEEecccccCCCChHHHH
Q 005084 69 APL-LPSEITADLPA--NHRHTLYSSG----QIFFVTPRILIVDLL-TQRLPTSNLAGLIILNTHALTENSTETFI 136 (715)
Q Consensus 69 ~~~-~~~~itge~~~--~~R~~lY~~g----gV~fvTprIL~~DLL-s~ri~~~~ItgiVV~~AHr~~~~~~eaFI 136 (715)
+.+ .+...+|.-+- +.|+-.=... -|++.||-=|+--|- ..-+++....-+|||||+|+...+-..++
T Consensus 241 ~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl 316 (620)
T KOG0350|consen 241 GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWL 316 (620)
T ss_pred CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHH
Confidence 111 24445565543 2343333334 799999999876666 57788999999999999999886555553
No 138
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=78.30 E-value=4.5 Score=43.31 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=64.1
Q ss_pred EEEecCCCCHHHHHHHHHHHh---cCCCCEEEEecCCHhHHHHHHH---HhCCCCCCCCeeecCCCChhhHHHhh-cCCC
Q 005084 21 LVILSSGLSLPKLIASVLLLH---SPSQGTLLLLSSSPNLKSQIIH---YLAPNAPLLPSEITADLPANHRHTLY-SSGQ 93 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y---~~~~~lVlvl~~t~~~~~~i~~---~L~~~~~~~~~~itge~~~~~R~~lY-~~gg 93 (715)
|+..|+|.|||.+++..+..+ .+++..|+++++.......+.. .+...... .+.-..+......+| ..|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~nG~ 77 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS---WFEIKFNEWNDRKIILPNGS 77 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T---TTS--EEEE-SSEEEETTS-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH---hcCcccccCCCCcEEecCce
Confidence 467899999999988866633 2334677777777766654222 11110000 011111112222333 3444
Q ss_pred EEEECc-hHH-HHHhhcCCCCCCCeeEEEEecccccCCCChHHHHH-HHHHhcCcCccEEeecCCCcccccCcchHHHHH
Q 005084 94 IFFVTP-RIL-IVDLLTQRLPTSNLAGLIILNTHALTENSTETFIC-RIIKSLNREAYIRAFSDKPTAMVSGFAKTERIM 170 (715)
Q Consensus 94 V~fvTp-rIL-~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~-rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vm 170 (715)
.+.+.+ .-= ..+=+.| ....+|++|||=.+...- +..++ +.......... ..+|-.|. +...+-.++
T Consensus 78 ~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~s~p~~----~~~~~~~~~ 147 (384)
T PF03237_consen 78 RIQFRGADSPDSGDNIRG----FEYDLIIIDEAAKVPDDA-FSELIRRLRATWGGSIR-MYISTPPN----PGGWFYEIF 147 (384)
T ss_dssp EEEEES-----SHHHHHT----S--SEEEEESGGGSTTHH-HHHHHHHHHHCSTT--E-EEEEE-------SSSHHHHHH
T ss_pred EEEEeccccccccccccc----cccceeeeeecccCchHH-HHHHHHhhhhcccCcce-EEeecCCC----CCCceeeee
Confidence 433332 211 3355666 677899999987775532 33333 33332222222 25555555 345666666
Q ss_pred HHhccCe
Q 005084 171 KSLFIRK 177 (715)
Q Consensus 171 k~L~I~~ 177 (715)
....-..
T Consensus 148 ~~~~~~~ 154 (384)
T PF03237_consen 148 QRNLDDD 154 (384)
T ss_dssp HHHHCTS
T ss_pred ehhhcCC
Confidence 6555544
No 139
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=77.87 E-value=5.6 Score=40.20 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCeEEE--ecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAELLQEPNGGLVI--LSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvV--L~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+=|++.+..++..+ +.++| =+-|=|||.+++.+...+...+..|++++||......+.+...
T Consensus 4 ~~Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~ 67 (196)
T PF13604_consen 4 EEQREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG 67 (196)
T ss_dssp HHHHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC
Confidence 45899999988653 43333 4889999999998887665557889999999988888877654
No 140
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=77.60 E-value=5.6 Score=42.83 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHH-HHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCCC---CCCeeecC
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIAS-VLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNAP---LLPSEITA 78 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~-ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~~---~~~~~itg 78 (715)
-|+..+-.++.. .|..+=--.|-|||..++. +|. +-. ...--+|+|.||..+..|+.+.+...+. .......|
T Consensus 53 IQqrAi~~IlkG-rdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacig 131 (400)
T KOG0328|consen 53 IQQRAIPQILKG-RDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIG 131 (400)
T ss_pred HHhhhhhhhhcc-cceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEec
Confidence 355666666654 3777777789999933221 111 111 1124589999999999998776543221 13334444
Q ss_pred CCCh-hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 79 DLPA-NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 79 e~~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
..+. ++=+++=----|++-||--+.-=+-.+.+....|..+|.|||+-....---..|-++||--.+..-+.-|||+-
T Consensus 132 g~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl 210 (400)
T KOG0328|consen 132 GKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL 210 (400)
T ss_pred CCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC
Confidence 4443 33333332334667788665433445889999999999999999887766667788888766666666666653
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=77.30 E-value=16 Score=45.84 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=34.9
Q ss_pred HHHHH---HHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-c-CCCCEEEEecCCHhHHHHH
Q 005084 6 HQHII---AELLQEPNGGLVILSSGLSLPKLIASVLLLH-S-PSQGTLLLLSSSPNLKSQI 61 (715)
Q Consensus 6 Q~~I~---~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~-~~~~lVlvl~~t~~~~~~i 61 (715)
|.+++ .+++.++...++-.|||.||| +...+=.++ . ..+..|+|.-+|..+.+|+
T Consensus 262 Q~~m~~~v~~~l~~~~~~~iEA~TGtGKT-laYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql 321 (928)
T PRK08074 262 QQEMMKEVYTALRDSEHALIEAGTGTGKS-LAYLLPAAYFAKKKEEPVVISTYTIQLQQQL 321 (928)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCchh-HHHHHHHHHHhhccCCeEEEEcCCHHHHHHH
Confidence 55543 445666545566679999999 444333333 2 3467788888888777664
No 142
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=75.88 E-value=6.5 Score=47.78 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHhc---------CCCCeEEEecCCCCHHHHHHHHHHHh--cCCC-----CEEEEecCCHhHHHHHHHHh
Q 005084 2 VLEFHQHIIAELLQ---------EPNGGLVILSSGLSLPKLIASVLLLH--SPSQ-----GTLLLLSSSPNLKSQIIHYL 65 (715)
Q Consensus 2 lL~YQ~~I~~~~l~---------~~~d~LvVL~tGLG~~~Iva~ll~~y--~~~~-----~lVlvl~~t~~~~~~i~~~L 65 (715)
|-+.|++.|+=+.. +.+.|++-=..|||||+..-.||.-| ..|+ +.-||+.|+..+..|-.++-
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkEF~ 318 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKEFG 318 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHHHH
Confidence 45678888775421 22233444457999999988888843 4556 78899999998887755554
Q ss_pred CCCC--CCCCeeecCCCCh--hhHHHhhcCCCEEEECchHH-HHHhh---cCCCCCCCeeEEEEecccccCCCChHHHHH
Q 005084 66 APNA--PLLPSEITADLPA--NHRHTLYSSGQIFFVTPRIL-IVDLL---TQRLPTSNLAGLIILNTHALTENSTETFIC 137 (715)
Q Consensus 66 ~~~~--~~~~~~itge~~~--~~R~~lY~~ggV~fvTprIL-~~DLL---s~ri~~~~ItgiVV~~AHr~~~~~~eaFI~ 137 (715)
+=.. ...+..+.+.... -+=..+-.-|+..|.||-.+ --|.+ ...+-...++.+|.||+||..... ..+.
T Consensus 319 KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~--s~~~ 396 (776)
T KOG0390|consen 319 KWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSD--SLTL 396 (776)
T ss_pred HhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchh--hHHH
Confidence 3211 1123333333221 11112222233334443221 11122 133345567889999999988744 3334
Q ss_pred HHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 138 RIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 138 rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..+-+ ...=.-+|-+|-. +.+.++..-|. +.+|-|=-.+.....
T Consensus 397 kaL~~l~-t~rRVLLSGTp~Q-----Ndl~EyFnlL~----fvrP~~Lgs~~sf~k 442 (776)
T KOG0390|consen 397 KALSSLK-TPRRVLLTGTPIQ-----NDLKEYFNLLD----FVRPGFLGSISSFKK 442 (776)
T ss_pred HHHHhcC-CCceEEeeCCccc-----ccHHHHHHHHh----hcChhhccchHHHHH
Confidence 4333333 3333457889974 56677766666 466776666665554
No 143
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=74.99 E-value=16 Score=44.48 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHh----cCCCCeEEEecCCCCHHHHHHHHHH-Hhc-CC--CCEEEEecCCHhHHHHHHHHhCCCCCCC-
Q 005084 2 VLEFHQHIIAELL----QEPNGGLVILSSGLSLPKLIASVLL-LHS-PS--QGTLLLLSSSPNLKSQIIHYLAPNAPLL- 72 (715)
Q Consensus 2 lL~YQ~~I~~~~l----~~~~d~LvVL~tGLG~~~Iva~ll~-~y~-~~--~~lVlvl~~t~~~~~~i~~~L~~~~~~~- 72 (715)
+.+||..-+.-+. ....+|.+.-.-|||+|.-+..++. .+. .. .+.+|++.|+.....+-.++-+..+...
T Consensus 339 lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~~~~~ 418 (866)
T COG0553 339 LRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAPDLRL 418 (866)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCccccc
Confidence 3578888776544 1233788888999999954444443 332 22 3568888888777766555432222222
Q ss_pred CeeecCCCC--hhhHHHh--hcCC-----CEEEECchHHHHHh--hcCCCCCCCeeEEEEecccccCC-CChHHHHHHHH
Q 005084 73 PSEITADLP--ANHRHTL--YSSG-----QIFFVTPRILIVDL--LTQRLPTSNLAGLIILNTHALTE-NSTETFICRII 140 (715)
Q Consensus 73 ~~~itge~~--~~~R~~l--Y~~g-----gV~fvTprIL~~DL--Ls~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rly 140 (715)
+.+..|+.. ..+|+.+ +... --+++|+--..... -.+.+.-....-+|+||||++.. .+..+..++.+
T Consensus 419 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~ 498 (866)
T COG0553 419 VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFL 498 (866)
T ss_pred eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHH
Confidence 445555543 1124444 3332 23444444444442 34555666777899999999866 55566666666
Q ss_pred HhcCcCccEEeecCCCcccccCcchHHHHHH
Q 005084 141 KSLNREAYIRAFSDKPTAMVSGFAKTERIMK 171 (715)
Q Consensus 141 r~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk 171 (715)
+..++ .++|-+|- -.....+-.++.
T Consensus 499 ~~~~~----~~LtgTPl--en~l~eL~sl~~ 523 (866)
T COG0553 499 KALNR----LDLTGTPL--ENRLGELWSLLQ 523 (866)
T ss_pred hhcce----eeCCCChH--hhhHHHHHHHHH
Confidence 55544 89999992 223344444444
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=74.95 E-value=4.9 Score=50.75 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHH----HHhCCCCCCCCeeecCCCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQII----HYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~----~~L~~~~~~~~~~itge~~ 81 (715)
|-++|..+...+.|-||.-|+|=|+| ++|.+..+...+-+.+.-++|...-+...- ..+.......++..||+.+
T Consensus 1148 qtqVf~~~y~~nd~v~vga~~gsgkt-~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s 1226 (1674)
T KOG0951|consen 1148 QTQVFTSLYNTNDNVLVGAPNGSGKT-ACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETS 1226 (1674)
T ss_pred eEEEEeeeecccceEEEecCCCCchh-HHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccc
Confidence 33445555555557788899999999 889888877544555666666665443221 1122111124677889887
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC--------hHHHHHHHHHhcCcCccEEeec
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS--------TETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~--------~eaFI~rlyr~~nk~gfIkAfS 153 (715)
... ++-..|-|++.||-=. |+|. ....+...|+|++|-+-|.+ +.-||++-+- ++-.+.|+|
T Consensus 1227 ~~l--kl~~~~~vii~tpe~~--d~lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~---k~ir~v~ls 1296 (1674)
T KOG0951|consen 1227 LDL--KLLQKGQVIISTPEQW--DLLQ---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLE---KKIRVVALS 1296 (1674)
T ss_pred cch--HHhhhcceEEechhHH--HHHh---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHH---hheeEEEee
Confidence 653 4567899999999754 6674 88999999999999987744 2446665443 556688888
Q ss_pred CCCc
Q 005084 154 DKPT 157 (715)
Q Consensus 154 dsP~ 157 (715)
.+-.
T Consensus 1297 ~~la 1300 (1674)
T KOG0951|consen 1297 SSLA 1300 (1674)
T ss_pred hhhc
Confidence 7644
No 145
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=74.25 E-value=21 Score=43.66 Aligned_cols=98 Identities=9% Similarity=-0.033 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhh
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANH 84 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~ 84 (715)
=|++.+..++...+-.+|+=+.|=|||.++..++..+...|..|++++||......+.+..... ..| ..
T Consensus 356 ~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~------a~T----i~- 424 (744)
T TIGR02768 356 EQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIE------SRT----LA- 424 (744)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCc------eee----HH-
Confidence 3778888777642234555689999999999988876655778888999988777776543321 001 11
Q ss_pred HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 85 RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 85 R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
+ +..++..+.-++...+.||||||-.+..
T Consensus 425 ~----------------~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 425 S----------------LEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred H----------------HHhhhccCcccCCCCcEEEEECcccCCH
Confidence 1 1111233444566788999999976643
No 146
>PRK14974 cell division protein FtsY; Provisional
Probab=73.55 E-value=26 Score=38.76 Aligned_cols=118 Identities=9% Similarity=0.055 Sum_probs=64.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCC---HhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSS---PNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t---~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
+++=+.|-|||..++.|.+.+...+..|.++++. ....+|+....... .+.++.+....
T Consensus 144 ~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l---gv~v~~~~~g~--------------- 205 (336)
T PRK14974 144 VFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL---GVKVIKHKYGA--------------- 205 (336)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc---CCceecccCCC---------------
Confidence 4455899999999999998666556667667665 23345554333221 12222222211
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccCCCC-hHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALTENS-TETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~-~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
.|.-+..|.+.- ........|+||.|.+...+. ...-+..+.+.-++..-++-+++..+
T Consensus 206 dp~~v~~~ai~~-~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 DPAAVAYDAIEH-AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred CHHHHHHHHHHH-HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 111111111110 011234589999999986422 23344556666677777877777655
No 147
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.65 E-value=4.2 Score=47.23 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.7
Q ss_pred CCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 415 NDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 415 ~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
++.++|||||.+.++|.+|..+|..
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~ 363 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRR 363 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHh
Confidence 5678999999999999999999965
No 148
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=71.58 E-value=17 Score=40.37 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=51.2
Q ss_pred CCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 114 SNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 114 ~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
..-.-+|||+||++..+.+.+ ++....+-.....+.-+|.+|+.+ +.++.. ++..+.+.|=-..++..+|.
T Consensus 140 g~~rVviIDeAd~l~~~aana-LLk~LEEpp~~~~fiLit~~~~~l------lptIrS--Rc~~i~l~pl~~~~~~~~L~ 210 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANA-ILKTLEEPPARALFILISHSSGRL------LPTIRS--RCQPISLKPLDDDELKKALS 210 (351)
T ss_pred CCceEEEEEchhhcCHHHHHH-HHHHHhcCCCCceEEEEECChhhc------cHHHHh--hccEEEecCCCHHHHHHHHH
Confidence 344678999999999988877 577777666666666678888753 223322 34578888888888888885
Q ss_pred c
Q 005084 194 R 194 (715)
Q Consensus 194 ~ 194 (715)
.
T Consensus 211 ~ 211 (351)
T PRK09112 211 H 211 (351)
T ss_pred H
Confidence 4
No 149
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=71.44 E-value=25 Score=40.17 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=96.0
Q ss_pred HhcCCCCeEEEecCCCCHHHHHHHH-HH-H--hc-----CCCCEEEEecCCHhHHHHHHHHhC----CCCC-CCCeeecC
Q 005084 13 LLQEPNGGLVILSSGLSLPKLIASV-LL-L--HS-----PSQGTLLLLSSSPNLKSQIIHYLA----PNAP-LLPSEITA 78 (715)
Q Consensus 13 ~l~~~~d~LvVL~tGLG~~~Iva~l-l~-~--y~-----~~~~lVlvl~~t~~~~~~i~~~L~----~~~~-~~~~~itg 78 (715)
+|+. .|-+.=..||=|||..-+.= +. + +. ..+-..++|.||..+.+|+-..+. .|+. ....-++.
T Consensus 53 aLEg-KDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s 131 (569)
T KOG0346|consen 53 ALEG-KDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLAS 131 (569)
T ss_pred hhcC-cceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 4554 47777788999999322211 11 1 11 124567888999999888543321 1211 11222333
Q ss_pred CC-ChhhHHHhhcCCCEEEECchHHHHHhhcCC-CCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCccEEeecCC
Q 005084 79 DL-PANHRHTLYSSGQIFFVTPRILIVDLLTQR-LPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 79 e~-~~~~R~~lY~~ggV~fvTprIL~~DLLs~r-i~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
++ ....|..+-..--|++.||-=|..=+-+|. .+++.++-+|||||+-+.. .|.+-+ .++-+.--+.-=-.-+||+
T Consensus 132 ~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedl-k~l~~~LPr~~Q~~LmSAT 210 (569)
T KOG0346|consen 132 SMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDL-KKLRSHLPRIYQCFLMSAT 210 (569)
T ss_pred ccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHH-HHHHHhCCchhhheeehhh
Confidence 33 234567777788999999999988888888 8999999999999998765 444443 2322222221112334554
Q ss_pred CcccccCcchHHHHHHHhccCeeEec
Q 005084 156 PTAMVSGFAKTERIMKSLFIRKLHLW 181 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L~I~~v~l~ 181 (715)
-.. +. ..||.|++.+-.+-
T Consensus 211 l~d---Dv----~~LKkL~l~nPviL 229 (569)
T KOG0346|consen 211 LSD---DV----QALKKLFLHNPVIL 229 (569)
T ss_pred hhh---HH----HHHHHHhccCCeEE
Confidence 332 32 34666777765553
No 150
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.37 E-value=16 Score=43.78 Aligned_cols=135 Identities=13% Similarity=0.201 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCeEEEec-CCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhH-------HHHHHHHhCCC-CC---
Q 005084 5 FHQHIIAELLQEPNGGLVILS-SGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNL-------KSQIIHYLAPN-AP--- 70 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~-tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~-------~~~i~~~L~~~-~~--- 70 (715)
++.+++.-+-.+ +.+||++ ||=|||.-++.+|+ -|...| |+++|.|- +.+..+++... +.
T Consensus 360 ~R~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~edGY~~~G----mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 360 CRDQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYEDGYADNG----MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHhcccccCC----eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 456666665544 7777776 89999999999998 465534 45555542 24456666431 10
Q ss_pred --CCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHH-HHHHHHhcCcCc
Q 005084 71 --LLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETF-ICRIIKSLNREA 147 (715)
Q Consensus 71 --~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaF-I~rlyr~~nk~g 147 (715)
.-+-.+|++. --|-|+|--||.-..|..+ .++.-+.||.||||.=+=|-.-.| +++.-..+.++-
T Consensus 434 YsIRFEdvT~~~-----------T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 434 YSIRFEDVTSED-----------TKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred eEEEeeecCCCc-----------eeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 1233344332 2366888889988888766 577889999999996555444333 444443333444
Q ss_pred cEEeecCCCc
Q 005084 148 YIRAFSDKPT 157 (715)
Q Consensus 148 fIkAfSdsP~ 157 (715)
-+.-.||+=.
T Consensus 502 KliVtSATm~ 511 (1042)
T KOG0924|consen 502 KLIVTSATMD 511 (1042)
T ss_pred eEEEeecccc
Confidence 4444555433
No 151
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=68.71 E-value=8.4 Score=44.44 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=64.0
Q ss_pred chHHHHHHHHHHhcC--CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHH-hC--CCCCCCCeee
Q 005084 2 VLEFHQHIIAELLQE--PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHY-LA--PNAPLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~--~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~-L~--~~~~~~~~~i 76 (715)
+-+||..-+..+.-+ ..+|.+|||.|-||+ +|..- .-+.-.+-+|||.++.--++|.+.. +. ......+..+
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKt-LVGvT--Aa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKT-LVGVT--AACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCc-eeeee--eeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 357998888877542 237899999999999 43321 1122244566666665444443332 21 1122356666
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHH------------HHHhhcCCCCCCCeeEEEEeccccc
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRIL------------IVDLLTQRLPTSNLAGLIILNTHAL 127 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL------------~~DLLs~ri~~~~ItgiVV~~AHr~ 127 (715)
|.+- ++|. =...||++.|-..+ +.|+|.++ .-..||.||.|-+
T Consensus 380 Tsd~--Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~----EWGllllDEVHvv 434 (776)
T KOG1123|consen 380 TSDA--KERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGR----EWGLLLLDEVHVV 434 (776)
T ss_pred eccc--cccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcC----eeeeEEeehhccc
Confidence 6542 2222 23456666665443 34666665 3455667777754
No 152
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=68.39 E-value=28 Score=36.59 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcC--CCCeEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEecCCHhHHHH---HHHHhCCCCCCCCee-
Q 005084 3 LEFHQHIIAELLQE--PNGGLVILSSGLSLPKLIASVLLL-HSPSQGTLLLLSSSPNLKSQ---IIHYLAPNAPLLPSE- 75 (715)
Q Consensus 3 L~YQ~~I~~~~l~~--~~d~LvVL~tGLG~~~Iva~ll~~-y~~~~~lVlvl~~t~~~~~~---i~~~L~~~~~~~~~~- 75 (715)
-+=|.+|+.++.+. +.|...=|-.|-|||.+|.=++.+ ..+.+.||.++=|++...+- +...|+..-...+..
T Consensus 25 R~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 25 RPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred eHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 35688899998763 347888899999999999998884 35556788887777765532 233332210011111
Q ss_pred -ecCCC--Chhh--H-H----HhhcCCCEEEECchHHHHHhhcC
Q 005084 76 -ITADL--PANH--R-H----TLYSSGQIFFVTPRILIVDLLTQ 109 (715)
Q Consensus 76 -itge~--~~~~--R-~----~lY~~ggV~fvTprIL~~DLLs~ 109 (715)
+.-++ +++. + . +.=.+|||+.+||--+.-=.|.|
T Consensus 105 pFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 105 PFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 11112 2211 1 1 12258999999997655444443
No 153
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=67.80 E-value=50 Score=36.70 Aligned_cols=179 Identities=9% Similarity=0.030 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHhcCC----CCeEEEecCCCCHHHHHHHHHH-HhcCC-CCEEEEecCCH-hHHHHHHHHhCCCCCCCC
Q 005084 1 MVLEFHQHIIAELLQEP----NGGLVILSSGLSLPKLIASVLL-LHSPS-QGTLLLLSSSP-NLKSQIIHYLAPNAPLLP 73 (715)
Q Consensus 1 ~lL~YQ~~I~~~~l~~~----~d~LvVL~tGLG~~~Iva~ll~-~y~~~-~~lVlvl~~t~-~~~~~i~~~L~~~~~~~~ 73 (715)
|++|.|+++...+..-. .--|+.=|.|.||+.++-.|.. +.|.. ++-. -++.. ..-..+. ....+++
T Consensus 1 m~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~--~~Cg~C~~C~~~~----~~~HPD~ 74 (342)
T PRK06964 1 MLYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDG--EPCGTCAACNWFA----QGNHPDY 74 (342)
T ss_pred CCCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCCCCCHHHHHHH----cCCCCCE
Confidence 78899999888875421 0236778999999977666665 44521 1000 01110 0001111 1112344
Q ss_pred eeecCCCC--------hhhHHHhhcCCCE--------EEE-CchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHH
Q 005084 74 SEITADLP--------ANHRHTLYSSGQI--------FFV-TPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFI 136 (715)
Q Consensus 74 ~~itge~~--------~~~R~~lY~~ggV--------~fv-TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI 136 (715)
..+..+-. ...+..-+.++|. +.| .=|-|. +.++.+-.-..-.-+||++||+++...+-++
T Consensus 75 ~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~-~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaL- 152 (342)
T PRK06964 75 RIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALL-DFCGVGTHRGGARVVVLYPAEALNVAAANAL- 152 (342)
T ss_pred EEEecccccccccccccccccchhhcccccccccccccCHHHHHHHH-HHhccCCccCCceEEEEechhhcCHHHHHHH-
Confidence 44432210 0011111222221 111 112222 2333332234456789999999999888887
Q ss_pred HHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccC
Q 005084 137 CRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELERE 195 (715)
Q Consensus 137 ~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~ 195 (715)
++..-+-.+..++.-.|.+|+.+ +.++.. +...+.+.|--..++..+|..+
T Consensus 153 LKtLEEPp~~t~fiL~t~~~~~L------LpTI~S--Rcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 153 LKTLEEPPPGTVFLLVSARIDRL------LPTILS--RCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHhcCCCcCcEEEEEECChhhC------cHHHHh--cCEEEEecCCCHHHHHHHHHHc
Confidence 56666777777788889999864 334443 4467788887788888888553
No 154
>PRK04132 replication factor C small subunit; Provisional
Probab=67.17 E-value=17 Score=44.97 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred ecCCCCHHHHHHHHHH-HhcC-CCCEEEEecCCHh-HHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEECch
Q 005084 24 LSSGLSLPKLIASVLL-LHSP-SQGTLLLLSSSPN-LKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFVTPR 100 (715)
Q Consensus 24 L~tGLG~~~Iva~ll~-~y~~-~~~lVlvl~~t~~-~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fvTpr 100 (715)
||.|||||.++-.+.+ +|.+ .+.-++-+||++. =+..|++.+.......+ + +
T Consensus 573 lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~--~---------------~-------- 627 (846)
T PRK04132 573 LPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP--I---------------G-------- 627 (846)
T ss_pred CCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC--c---------------C--------
Confidence 8999999976666655 5532 2345888999884 23344433321000000 0 0
Q ss_pred HHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcc
Q 005084 101 ILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTA 158 (715)
Q Consensus 101 IL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~s 158 (715)
+ .....+|+||||+++...+.+ +++..-+.. ...||.+ +..|..
T Consensus 628 --------~----~~~KVvIIDEaD~Lt~~AQnA-LLk~lEep~~~~~FILi-~N~~~k 672 (846)
T PRK04132 628 --------G----ASFKIIFLDEADALTQDAQQA-LRRTMEMFSSNVRFILS-CNYSSK 672 (846)
T ss_pred --------C----CCCEEEEEECcccCCHHHHHH-HHHHhhCCCCCeEEEEE-eCChhh
Confidence 0 124679999999998754443 355555433 3445554 555654
No 155
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.69 E-value=6.9 Score=46.05 Aligned_cols=134 Identities=13% Similarity=0.224 Sum_probs=76.3
Q ss_pred EecCCCCHHHHHHHHHH-HhcC-CCCEEEEecCCHhHHHHHHHHhCCCCC----CCCeeecCCCChhhHHHhh----cCC
Q 005084 23 ILSSGLSLPKLIASVLL-LHSP-SQGTLLLLSSSPNLKSQIIHYLAPNAP----LLPSEITADLPANHRHTLY----SSG 92 (715)
Q Consensus 23 VL~tGLG~~~Iva~ll~-~y~~-~~~lVlvl~~t~~~~~~i~~~L~~~~~----~~~~~itge~~~~~R~~lY----~~g 92 (715)
=||||-|+|.|.|.|+. .|.. -++.+|.+|.+.-+...+..+...... .....+.++..+=+...++ ..=
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~i 82 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDAI 82 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCce
Confidence 49999999988887776 5542 357888888877665433222111000 0011122221111111122 123
Q ss_pred CEEEECchHHHHHhhcCC---CCCCCe---e-EEEEecccccCC-------------CChHHHHHHHHHhcCcCccEEee
Q 005084 93 QIFFVTPRILIVDLLTQR---LPTSNL---A-GLIILNTHALTE-------------NSTETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 93 gV~fvTprIL~~DLLs~r---i~~~~I---t-giVV~~AHr~~~-------------~~~eaFI~rlyr~~nk~gfIkAf 152 (715)
-|+|.|-|=|-+|+.+.+ |..++. . -++-||||++-. .+-++ .+.+=...|+.-.++-|
T Consensus 83 ei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~-~v~la~~~nkd~~~lef 161 (812)
T COG3421 83 EIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWES-VVKLALEQNKDNLLLEF 161 (812)
T ss_pred EEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHH-HHHHHHhcCCCceeehh
Confidence 589999999999999854 433332 2 246799998743 11223 23344567888888888
Q ss_pred cCCCc
Q 005084 153 SDKPT 157 (715)
Q Consensus 153 SdsP~ 157 (715)
|++--
T Consensus 162 ~at~~ 166 (812)
T COG3421 162 SATIP 166 (812)
T ss_pred hhcCC
Confidence 87643
No 156
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=65.15 E-value=23 Score=34.17 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh-----cCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHh
Q 005084 4 EFHQHIIAELL-----QEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN 56 (715)
Q Consensus 4 ~YQ~~I~~~~l-----~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~ 56 (715)
+.|.+-+.+++ ..++..+|+=+.|-|||.++..++..+...+..++.+++.+.
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35666667766 333356777789999999999988854433445555555444
No 157
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=63.99 E-value=32 Score=31.92 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH
Q 005084 20 GLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK 58 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~ 58 (715)
.+|+=+.|.||+.++..++......++.|+++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 466778899999988888885544567777776665443
No 158
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=63.57 E-value=21 Score=38.53 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHH---HhcCCC----CEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLL---LHSPSQ----GTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~~~----~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+.|.+++.. .+.++.++|+-.|||.||| +.+.+-. +..... ..|+++-.|..+.++....+.
T Consensus 11 ~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT-l~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 11 PIQYEFMEELKRVLDRGKIGILESPTGTGKT-LSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCCcchh-HHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 568886555 4556668899999999999 3322222 122122 145555556666655544443
No 159
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=63.57 E-value=21 Score=38.53 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHH---HhcCCC----CEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLL---LHSPSQ----GTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~~~----~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+.|.+++.. .+.++.++|+-.|||.||| +.+.+-. +..... ..|+++-.|..+.++....+.
T Consensus 11 ~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT-l~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 11 PIQYEFMEELKRVLDRGKIGILESPTGTGKT-LSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCCcchh-HHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 568886555 4556668899999999999 3322222 122122 145555556666655544443
No 160
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=62.26 E-value=1.3e+02 Score=37.32 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
....+||||+|+++.....++ ++..-+.. ..-||++-+ +|..+ ...|..-| ..+.|.+--..++...|.
T Consensus 119 r~KVIIIDEah~LT~~A~NAL-LKtLEEPP~~v~FILaTt-d~~KI---p~TIrSRC-----q~f~Fk~Ls~eeIv~~L~ 188 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAM-LKTLEEPPPHVKFILATT-DPQKI---PVTVLSRC-----LQFNLKQMPAGHIVSHLE 188 (830)
T ss_pred CceEEEEeChhhCCHHHHHHH-HHHHHhcCCCeEEEEEEC-Chhhc---cchhhhhe-----EEEecCCcCHHHHHHHHH
Confidence 346799999999987655554 55544433 345666544 45543 22333333 455555555666666664
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=62.19 E-value=25 Score=31.05 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=25.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhH
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNL 57 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~ 57 (715)
..+++=|.|-|||.++..+.......+..++.++++...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 567888999999977777766444333245556555543
No 162
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=59.89 E-value=54 Score=40.70 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=38.6
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
....+||||||+++..... .+++...+-- ..-||++ |.++..+ +..+.+. ...+.+.+--..++..+|.
T Consensus 120 ~~KV~IIDEad~lt~~a~N-aLLK~LEEpP~~~~fIl~-tt~~~kL------l~TIrSR--c~~v~F~~l~~~~l~~~L~ 189 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFN-ALLKIVEEPPEHLKFIFA-TTEPDKV------IGTIRSR--THHYPFRLVPPEVMRGYLE 189 (824)
T ss_pred CceEEEEechhhcCHHHHH-HHHHHHhCCCCCeEEEEE-eCChhhh------hHHHHhh--eeEEEeeCCCHHHHHHHHH
Confidence 4466899999999974433 3345444332 2345554 3334321 1122221 3456666666777777775
Q ss_pred c
Q 005084 194 R 194 (715)
Q Consensus 194 ~ 194 (715)
.
T Consensus 190 ~ 190 (824)
T PRK07764 190 R 190 (824)
T ss_pred H
Confidence 3
No 163
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=59.64 E-value=43 Score=40.91 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCC--CEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQ--GTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~--~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+=|++.+..++.. +-.+|.=+.|=|||.++..++..+...+ ..|++++||......+.+.+.
T Consensus 326 ~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g 389 (720)
T TIGR01448 326 EEQKQALDTAIQH-KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG 389 (720)
T ss_pred HHHHHHHHHHHhC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC
Confidence 3477777777654 2445555789999999999988665444 568888999888888876654
No 164
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=59.29 E-value=36 Score=42.47 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hh---cC-----CCCEEEEecCCHhHHHHHHHHhCC---CCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LH---SP-----SQGTLLLLSSSPNLKSQIIHYLAP---NAPL 71 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y---~~-----~~~lVlvl~~t~~~~~~i~~~L~~---~~~~ 71 (715)
+-|.+.+-.+++. .|.+.|-=||-||| +.-.|.. .+ .+ .|.+.+++.||..+..||-+.+.. +-..
T Consensus 390 ~IQ~qAiP~ImsG-rdvIgvakTgSGKT-~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~i 467 (997)
T KOG0334|consen 390 PIQAQAIPAIMSG-RDVIGVAKTGSGKT-LAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGI 467 (997)
T ss_pred chhhhhcchhccC-cceEEeeccCCccc-hhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCc
Confidence 4466666665554 49999999999999 4332322 22 12 268999999999999988655432 1112
Q ss_pred CCeeecCCCChhhHHHhhcC-CCEEEECchHHHHHhhcCC---CCCCCeeEEEEecccccCCCChHHHHHH
Q 005084 72 LPSEITADLPANHRHTLYSS-GQIFFVTPRILIVDLLTQR---LPTSNLAGLIILNTHALTENSTETFICR 138 (715)
Q Consensus 72 ~~~~itge~~~~~R~~lY~~-ggV~fvTprIL~~DLLs~r---i~~~~ItgiVV~~AHr~~~~~~eaFI~r 138 (715)
.+..+.|.+..++=..--.. .-|+++||-..+-=+..+. .++..|+-+|.|||+|...---+..|.+
T Consensus 468 r~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 468 RVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred eEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 45566666655443333333 4567777765543333333 3566777999999999865333333434
No 165
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.03 E-value=2.3e+02 Score=32.93 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHh
Q 005084 276 KTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRV 327 (715)
Q Consensus 276 ~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~~aa~~lf~~Ak~Rv 327 (715)
..+-.++..+...|...-+.||..+..++. .| ..=+++|+..|.+-+
T Consensus 245 ~~i~~li~si~~~d~~~Al~~l~~ll~~Ge--dp---~~i~r~l~~~~~edi 291 (472)
T PRK14962 245 EVVRDYINAIFNGDVKRVFTVLDDVYYSGK--DY---EVLIQQAIEDLVEDL 291 (472)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CH---HHHHHHHHHHHHHHc
Confidence 345567778888888888888888765532 11 233666666665533
No 166
>PF13245 AAA_19: Part of AAA domain
Probab=58.19 E-value=31 Score=29.61 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHHhcCCCCeEE-EecCCCCHHHHHHHHHH-Hhc---CCCCEEEEecCCHhHHHHHHHHh
Q 005084 10 IAELLQEPNGGLV-ILSSGLSLPKLIASVLL-LHS---PSQGTLLLLSSSPNLKSQIIHYL 65 (715)
Q Consensus 10 ~~~~l~~~~d~Lv-VL~tGLG~~~Iva~ll~-~y~---~~~~lVlvl~~t~~~~~~i~~~L 65 (715)
+..++.+ ++.+| .=|.|=|||..+++.+. ++. .++.-|+++.++....+.|.+.+
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4445653 14444 56899999988888777 331 22778999999999998888777
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=58.00 E-value=27 Score=38.49 Aligned_cols=162 Identities=11% Similarity=0.121 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHhcCCC--Ce-EEEecCCCCHHHHHHHHHH-HhcC-CCCEEEEecCCH-hHHHHHHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAELLQEPN--GG-LVILSSGLSLPKLIASVLL-LHSP-SQGTLLLLSSSP-NLKSQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~--d~-LvVL~tGLG~~~Iva~ll~-~y~~-~~~lVlvl~~t~-~~~~~i~~~L~~~~~~~~~~ 75 (715)
++|.|+..+..++..++ .+ |+.=|.|.||+.++-.|.. +.|. +++. -++.. +-=..|. ....+++..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~---~~Cg~C~sC~~~~----~g~HPD~~~ 76 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG---GACGSCKGCQLLR----AGSHPDNFV 76 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCCCCHHHHHHh----cCCCCCEEE
Confidence 56889999999876511 13 5677999999977767766 4442 1100 00000 0001111 111234444
Q ss_pred ecCC-----CChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 76 ITAD-----LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 76 itge-----~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
+..+ +..++= |=++ +.++-.=.-..-.-+|||+||+.+...+.++ ++..-+-..+.++.
T Consensus 77 i~~~~~~~~i~id~i--------------R~l~-~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaL-LK~LEEPp~~~~fi 140 (328)
T PRK05707 77 LEPEEADKTIKVDQV--------------RELV-SFVVQTAQLGGRKVVLIEPAEAMNRNAANAL-LKSLEEPSGDTVLL 140 (328)
T ss_pred EeccCCCCCCCHHHH--------------HHHH-HHHhhccccCCCeEEEECChhhCCHHHHHHH-HHHHhCCCCCeEEE
Confidence 4322 122110 1111 1111110112224468899999999887776 56666655666666
Q ss_pred eecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhcc
Q 005084 151 AFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 151 AfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~ 194 (715)
-.|.+|..+ +.++... ...+.+.|--+.++..+|..
T Consensus 141 L~t~~~~~l------l~TI~SR--c~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 141 LISHQPSRL------LPTIKSR--CQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred EEECChhhC------cHHHHhh--ceeeeCCCcCHHHHHHHHHH
Confidence 888899864 2333332 33466777777777777743
No 168
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=56.63 E-value=40 Score=41.31 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCeEEEe-cCCCCHHHHHHHHHH--HhcCC----CCEEEEecCCHhHH----HHHHHHhCCCCCC--
Q 005084 5 FHQHIIAELLQEPNGGLVIL-SSGLSLPKLIASVLL--LHSPS----QGTLLLLSSSPNLK----SQIIHYLAPNAPL-- 71 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL-~tGLG~~~Iva~ll~--~y~~~----~~lVlvl~~t~~~~----~~i~~~L~~~~~~-- 71 (715)
=+++|++.+-.+ +..+|+ .||-|||.-+-.||+ -|... ++.|=+--|..-.+ ++...+|...+..
T Consensus 260 eEq~IMEaIn~n--~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs 337 (1172)
T KOG0926|consen 260 EEQRIMEAINEN--PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS 337 (1172)
T ss_pred HHHHHHHHhhcC--CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee
Confidence 356777776544 554444 499999999999998 34322 45544444433222 4455666553221
Q ss_pred CCeeecCCCChhhHHHhhcCCCEEEECchHH----HHHhhcCCCCCCCeeEEEEecccc
Q 005084 72 LPSEITADLPANHRHTLYSSGQIFFVTPRIL----IVDLLTQRLPTSNLAGLIILNTHA 126 (715)
Q Consensus 72 ~~~~itge~~~~~R~~lY~~ggV~fvTprIL----~~DLLs~ri~~~~ItgiVV~~AHr 126 (715)
--.-+.|.+++. -.|-|.|--|| .+|+|-.++ +.||+||||.
T Consensus 338 YqIRfd~ti~e~--------T~IkFMTDGVLLrEi~~DflL~kY-----SvIIlDEAHE 383 (1172)
T KOG0926|consen 338 YQIRFDGTIGED--------TSIKFMTDGVLLREIENDFLLTKY-----SVIILDEAHE 383 (1172)
T ss_pred EEEEeccccCCC--------ceeEEecchHHHHHHHHhHhhhhc-----eeEEechhhh
Confidence 122344555554 34778888776 567765554 6799999995
No 169
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.03 E-value=29 Score=38.16 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=55.3
Q ss_pred EEEecCCHhHH--HHHHHHhCCCCCCCCeeecCCCCh-hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecc
Q 005084 48 LLLLSSSPNLK--SQIIHYLAPNAPLLPSEITADLPA-NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNT 124 (715)
Q Consensus 48 Vlvl~~t~~~~--~~i~~~L~~~~~~~~~~itge~~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~A 124 (715)
++++++.+... .|+-..|+.+-...+.+.||.++- .+=-++|..--+++.||-=+..=+-.|..++++++-+|.|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 34455555433 455555554322245566777765 444567877888999996554334458889999999999999
Q ss_pred cccCC
Q 005084 125 HALTE 129 (715)
Q Consensus 125 Hr~~~ 129 (715)
+++..
T Consensus 237 DKlLs 241 (459)
T KOG0326|consen 237 DKLLS 241 (459)
T ss_pred hhhhc
Confidence 99876
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=55.29 E-value=4.1 Score=50.50 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=69.3
Q ss_pred CCeEEEecCCCCHHHHHHHHH---HHhcCCCCEEEEecCCHhHHHHHHHHhCC---CCCCCCeeecCCCChhhHHHhhcC
Q 005084 18 NGGLVILSSGLSLPKLIASVL---LLHSPSQGTLLLLSSSPNLKSQIIHYLAP---NAPLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iva~ll---~~y~~~~~lVlvl~~t~~~~~~i~~~L~~---~~~~~~~~itge~~~~~R~~lY~~ 91 (715)
.+.++..|||-|++ +.|-+- .++.+|++.|..+++.++++..-....+. .+.......||++.+. -+--.+
T Consensus 944 ~~~~~g~ptgsgkt-~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd--~~~v~~ 1020 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKT-VVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD--VKAVRE 1020 (1230)
T ss_pred hhhhhcCCccCcch-hHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC--hhheec
Confidence 37788999999999 666443 36667788888898888887442221111 0112356778887665 344457
Q ss_pred CCEEEECchHHHHHhhcC----CCCCCCeeEEEEecccccCCC
Q 005084 92 GQIFFVTPRILIVDLLTQ----RLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~----ri~~~~ItgiVV~~AHr~~~~ 130 (715)
.++++.||--. |=.++ |==+.+|+.||+|+.|-.-..
T Consensus 1021 ~~~~ittpek~--dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1021 ADIVITTPEKW--DGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred CceEEcccccc--cCccccccchhhhccccceeecccccccCC
Confidence 89999998642 21221 222456788999998876554
No 171
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=54.63 E-value=2.4e+02 Score=33.45 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=44.4
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCc-CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNR-EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..+||||||+++.....++ ++..-+-.+ .-||++-+ .|..+ ...|.. +...+++.|--..++..++.
T Consensus 117 ~~KVvIIDEad~Lt~~A~NAL-LK~LEEpp~~t~FIL~tt-d~~kL---~~tI~S-----Rc~~~~F~~Ls~~ei~~~L~ 186 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNAL-LKTLEEPPSYVKFILATT-DPLKL---PATILS-----RTQHFRFKQIPQNSIISHLK 186 (535)
T ss_pred CeEEEEEECcccCCHHHHHHH-HHHHhhcCCceEEEEEEC-ChhhC---chHHHh-----hceeEEcCCCCHHHHHHHHH
Confidence 456789999999998666665 444444322 34777654 45432 233333 24677888888888888885
No 172
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=53.91 E-value=48 Score=39.00 Aligned_cols=147 Identities=12% Similarity=0.143 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHh---cCCC------CeEEEecCCCCHHHHHHHHHH---Hh-cCCCCEEEEecCCHhHHHH-H---HHH
Q 005084 2 VLEFHQHIIAELL---QEPN------GGLVILSSGLSLPKLIASVLL---LH-SPSQGTLLLLSSSPNLKSQ-I---IHY 64 (715)
Q Consensus 2 lL~YQ~~I~~~~l---~~~~------d~LvVL~tGLG~~~Iva~ll~---~y-~~~~~lVlvl~~t~~~~~~-i---~~~ 64 (715)
+.|||+-|+..++ .+.. -.++-||+|=||+.++|.++. +. ...+.-+.+++++...... | ...
T Consensus 62 l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~m 141 (546)
T COG4626 62 LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDM 141 (546)
T ss_pred cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHH
Confidence 5789999999987 1100 358899999999999996655 11 2346677777777765533 2 222
Q ss_pred hCCCCCCCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHH--HHHHHh
Q 005084 65 LAPNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFI--CRIIKS 142 (715)
Q Consensus 65 L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI--~rlyr~ 142 (715)
+.... ...... .+....+.-.+..+ .++=+.+.. -+++++-..-++.||||-|-..... .++ +..=+.
T Consensus 142 v~~~~--~l~~~~-~~q~~s~~i~~~~~---~s~ik~~aa--~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ 211 (546)
T COG4626 142 VKRDD--DLRDLC-NVQTHSRTITHRKT---DSTIKAVAA--DPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLG 211 (546)
T ss_pred HHhCc--chhhhh-ccccceeEEEeccc---ceeeeeecc--CCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhc
Confidence 22111 000000 00000000000000 000011111 2577888888999999999887753 222 222233
Q ss_pred cCcCccEEeecCCCcc
Q 005084 143 LNREAYIRAFSDKPTA 158 (715)
Q Consensus 143 ~nk~gfIkAfSdsP~s 158 (715)
..++||+-++|-++..
T Consensus 212 ar~~~l~~~ITT~g~~ 227 (546)
T COG4626 212 ARPEGLVVYITTSGDP 227 (546)
T ss_pred cCcCceEEEEecCCCC
Confidence 4678999999985554
No 173
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=53.72 E-value=1.6e+02 Score=35.00 Aligned_cols=164 Identities=13% Similarity=0.243 Sum_probs=105.6
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC-CCCCCeeecCCCChhhHHHhhc-----CCC
Q 005084 20 GLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN-APLLPSEITADLPANHRHTLYS-----SGQ 93 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~~itge~~~~~R~~lY~-----~gg 93 (715)
.-+|++.+=-+. ++-.|+..|-...++||+-.+.. +.++-+..... +...+..+.|.++-.+|.+.|. +.+
T Consensus 291 ~y~~v~l~~Ki~-~L~sFI~shlk~K~iVF~SscKq--vkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~ 367 (758)
T KOG0343|consen 291 SYVIVPLEDKID-MLWSFIKSHLKKKSIVFLSSCKQ--VKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAV 367 (758)
T ss_pred eEEEEehhhHHH-HHHHHHHhccccceEEEEehhhH--HHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcce
Confidence 457777776665 67777776655567777665554 33433322211 2235667899999999999996 589
Q ss_pred EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHh
Q 005084 94 IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 94 V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
|.|+| |+.+.-++...|.-+|=..|-- --..||-|.=|.- -+..+-++
T Consensus 368 vLF~T------Dv~aRGLDFpaVdwViQ~DCPe----dv~tYIHRvGRtA-------R~~~~G~s--------------- 415 (758)
T KOG0343|consen 368 VLFCT------DVAARGLDFPAVDWVIQVDCPE----DVDTYIHRVGRTA-------RYKERGES--------------- 415 (758)
T ss_pred EEEee------hhhhccCCCcccceEEEecCch----hHHHHHHHhhhhh-------cccCCCce---------------
Confidence 99988 8999999999999888776633 3345565543311 11122222
Q ss_pred ccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHH
Q 005084 174 FIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMD 222 (715)
Q Consensus 174 ~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~ 222 (715)
=++|-|--...+-.-|+.+.+.+.+|.+. +..|..|+..|-.++-
T Consensus 416 ---ll~L~psEeE~~l~~Lq~k~I~i~~i~i~-~~k~~~i~~~l~~ll~ 460 (758)
T KOG0343|consen 416 ---LLMLTPSEEEAMLKKLQKKKIPIKEIKID-PEKLTSIRNKLEALLA 460 (758)
T ss_pred ---EEEEcchhHHHHHHHHHHcCCCHHhhccC-HHHhhhHHHHHHHHHh
Confidence 23555655555566676677788888887 7778777776665543
No 174
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=53.32 E-value=65 Score=35.15 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=16.1
Q ss_pred CeEEEecCCCCHHHHHHHHHH
Q 005084 19 GGLVILSSGLSLPKLIASVLL 39 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~ 39 (715)
+.+|.=|+|-|||.++-.++.
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 455556779999988877776
No 175
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=53.26 E-value=27 Score=36.66 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcC--CCCEEEEecCCHhHHHHHHHHh
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSP--SQGTLLLLSSSPNLKSQIIHYL 65 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~--~~~lVlvl~~t~~~~~~i~~~L 65 (715)
|++++.. ... +.||.-+-|=|||.+++.-+. ++.. +..-+|++-.|......+.+.+
T Consensus 5 Q~~~i~~-~~~--~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri 65 (315)
T PF00580_consen 5 QRRIIRS-TEG--PLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERI 65 (315)
T ss_dssp HHHHHHS--SS--EEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhC-CCC--CEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHH
Confidence 7788877 655 999999999999988775543 3321 2345888888887665554443
No 176
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=52.63 E-value=38 Score=40.70 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAP 67 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~ 67 (715)
+.|+..+..++......||.=|.|=|||.+++.++......+..||++++|...+..+.+.|..
T Consensus 160 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 160 ESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4688888888864336666667999999988888873323466899999999988888877754
No 177
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=52.35 E-value=1.5e+02 Score=37.98 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=86.0
Q ss_pred CeEEEecCCCCHHHHHH--HHHHHhcCCCCEEEEecCCHhHHHH----HHHHhCCCCCCCCeeecCCCChhhHHHh---h
Q 005084 19 GGLVILSSGLSLPKLIA--SVLLLHSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAPLLPSEITADLPANHRHTL---Y 89 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva--~ll~~y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~~~~~~itge~~~~~R~~l---Y 89 (715)
|=|||==-|.|||.|+. .|....+ |+=|.||-||..+.+| |++-++.-+ ..+.++.-=.+.++-.+. -
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHH
Confidence 55888888999998774 4444432 5667777777777766 454444311 112222222344444333 3
Q ss_pred cCCC--EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHH
Q 005084 90 SSGQ--IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTE 167 (715)
Q Consensus 90 ~~gg--V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~ 167 (715)
.+|. |++-|=++ |+..+...+..++||||=||--=..-|. | ++-..+==|+.+||+|-.-| |.
T Consensus 694 a~G~vDIvIGTHrL-----L~kdv~FkdLGLlIIDEEqRFGVk~KEk-L----K~Lr~~VDvLTLSATPIPRT-----L~ 758 (1139)
T COG1197 694 AEGKVDIVIGTHRL-----LSKDVKFKDLGLLIIDEEQRFGVKHKEK-L----KELRANVDVLTLSATPIPRT-----LN 758 (1139)
T ss_pred hcCCccEEEechHh-----hCCCcEEecCCeEEEechhhcCccHHHH-H----HHHhccCcEEEeeCCCCcch-----HH
Confidence 4455 46667664 5777899999999999999974444332 2 22234455999999998743 22
Q ss_pred HHHHHhccCeeEe
Q 005084 168 RIMKSLFIRKLHL 180 (715)
Q Consensus 168 ~vmk~L~I~~v~l 180 (715)
|.-+||+.+.+
T Consensus 759 --Msm~GiRdlSv 769 (1139)
T COG1197 759 --MSLSGIRDLSV 769 (1139)
T ss_pred --HHHhcchhhhh
Confidence 44456665443
No 178
>PF05729 NACHT: NACHT domain
Probab=52.35 E-value=1.2e+02 Score=28.39 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=41.0
Q ss_pred EEEecccccCCCChH-------HHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhh
Q 005084 119 LIILNTHALTENSTE-------TFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEE 191 (715)
Q Consensus 119 iVV~~AHr~~~~~~e-------aFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~ 191 (715)
||+|-.+.+.+.... .++..++......+.-.=+|.+|..+ ..+.+.+..- ..+.+-|=-..++..+
T Consensus 85 lilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~----~~~~~~~~~~--~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 85 LILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF----PDLRRRLKQA--QILELEPFSEEDIKQY 158 (166)
T ss_pred EEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH----HHHHHhcCCC--cEEEECCCCHHHHHHH
Confidence 888888888775433 56667776633434444455566642 2233333322 4667766666777777
Q ss_pred hcc
Q 005084 192 LER 194 (715)
Q Consensus 192 l~~ 194 (715)
+++
T Consensus 159 ~~~ 161 (166)
T PF05729_consen 159 LRK 161 (166)
T ss_pred HHH
Confidence 643
No 179
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=51.74 E-value=80 Score=40.00 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHH
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHY 64 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~ 64 (715)
=|++.+..++...+-.+|+=+-|-|||.++..+...+...|..|++++||-.-...+.+.
T Consensus 350 eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~ 409 (988)
T PRK13889 350 EQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGG 409 (988)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhc
Confidence 478888888875223455667899999998887776665577888999998877777643
No 180
>PRK10536 hypothetical protein; Provisional
Probab=51.62 E-value=2.5e+02 Score=30.19 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHH-----------HHHhCCCCCC
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQI-----------IHYLAPNAPL 71 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i-----------~~~L~~~~~~ 71 (715)
.|...+. ++.+....+++=+.|-|||.++..+.. .. ...-..+++.+|.-+.-+.+ ...+..
T Consensus 63 ~Q~~~l~-al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~p---- 137 (262)
T PRK10536 63 AQAHYLK-AIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRP---- 137 (262)
T ss_pred HHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHH----
Confidence 4555444 444422444445899999977766655 22 22235566666664322111 111100
Q ss_pred CCeeecCCCChhhHHHhh-cCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 72 LPSEITADLPANHRHTLY-SSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 72 ~~~~itge~~~~~R~~lY-~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
..-.+..-...+.-..++ .+.|.+-+.| .-.+.||= ++ -+-||||||+.++..-.-.++.|+ - .|..-.|.
T Consensus 138 i~D~L~~~~~~~~~~~~~~~~~~~Iei~~----l~ymRGrt-l~-~~~vIvDEaqn~~~~~~k~~ltR~-g-~~sk~v~~ 209 (262)
T PRK10536 138 VYDVLVRRLGASFMQYCLRPEIGKVEIAP----FAYMRGRT-FE-NAVVILDEAQNVTAAQMKMFLTRL-G-ENVTVIVN 209 (262)
T ss_pred HHHHHHHHhChHHHHHHHHhccCcEEEec----HHHhcCCc-cc-CCEEEEechhcCCHHHHHHHHhhc-C-CCCEEEEe
Confidence 000000001122333343 2334444443 23456662 22 277999999999996666666554 2 22222222
Q ss_pred e---ecCCCcccccCcchHHHHHHH-hccCeeEe
Q 005084 151 A---FSDKPTAMVSGFAKTERIMKS-LFIRKLHL 180 (715)
Q Consensus 151 A---fSdsP~sf~~g~~~l~~vmk~-L~I~~v~l 180 (715)
| =.|.|..-++|+..+.+.+++ -++..|++
T Consensus 210 GD~~QiD~p~~~~sGL~~~~~~~k~~~~~~~i~l 243 (262)
T PRK10536 210 GDITQCDLPRGVKSGLSDALERFEEDEMVGIVRF 243 (262)
T ss_pred CChhhccCCCCCCCCHHHHHHHhCCCCceEEEEE
Confidence 2 147787655677766666663 23444444
No 181
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=51.52 E-value=36 Score=42.24 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHH---HHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHH
Q 005084 4 EFHQHIIA---ELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQI 61 (715)
Q Consensus 4 ~YQ~~I~~---~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i 61 (715)
+.|.+++. +++.++.+.++-.|||.||| +++.+=. .+...+..|++.-+|..+.+|+
T Consensus 248 ~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT-~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql 308 (850)
T TIGR01407 248 PEQLKLAELVLDQLTHSEKSLIEAPTGTGKT-LGYLLPALYYAITEKPVVISTNTKVLQSQL 308 (850)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCchh-HHHHHHHHHHhcCCCeEEEEeCcHHHHHHH
Confidence 56776544 34655557788899999999 3333332 2222456777777787776654
No 182
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=50.99 E-value=38 Score=38.00 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEecCCHhHHHHHHHHhCCCCC---CCCeeecC-
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH---SPSQGTLLLLSSSPNLKSQIIHYLAPNAP---LLPSEITA- 78 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y---~~~~~lVlvl~~t~~~~~~i~~~L~~~~~---~~~~~itg- 78 (715)
|+..+.-|+.. .|+..=...|=||+.+.+.-.... ......|++++|+..+.+|+.+.....+. .......|
T Consensus 53 QqraI~p~i~G-~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg 131 (397)
T KOG0327|consen 53 QQRAILPCIKG-HDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGG 131 (397)
T ss_pred HhccccccccC-CceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCc
Confidence 34444444443 377777888999996533322222 22357899999999999887655433211 12332333
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
..-+.+=.++-..+--+++..-=-+-|+|. +.+....|...|+|||......--.-+|-.+|+.-++.--+.-|||+-.
T Consensus 132 ~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p 211 (397)
T KOG0327|consen 132 TNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMP 211 (397)
T ss_pred ccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCc
Confidence 333334444444444334433334557775 6778888999999999999888888899999999988776666666544
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=50.56 E-value=35 Score=40.92 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCC
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAP 67 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~ 67 (715)
=|.+.|+..|..+ =+|+==|.|-|||...|.+++ +-...++-|||.+|+.-.++++.+.+..
T Consensus 414 SQ~~AV~~VL~rp-lsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 414 SQSNAVKHVLQRP-LSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred HHHHHHHHHHcCC-ceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 4888899999875 788889999999977776665 3333467899999999999998776644
No 184
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=50.39 E-value=32 Score=39.10 Aligned_cols=103 Identities=11% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHHHHhcCC----CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCC
Q 005084 17 PNGGLVILSSGLSLPKLIASVLLLHSPS----QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSG 92 (715)
Q Consensus 17 ~~d~LvVL~tGLG~~~Iva~ll~~y~~~----~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~g 92 (715)
++-+++|=|.|-|||.++..+...+... ..+|+++.-++.++..|.+.+.. .+..-|.+.++..|.++-.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg----~Vvast~d~p~~~~~~va~-- 241 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKG----EVVASTFDEPASRHVQVAE-- 241 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhc----eEEEecCCCChHHHHHHHH--
Confidence 4468899999999997666655554322 23444543444555555554431 2444455556655533211
Q ss_pred CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHH
Q 005084 93 QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET 134 (715)
Q Consensus 93 gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~ea 134 (715)
.+.+.......-..=+.|++|++||....+.+.
T Consensus 242 ---------~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei 274 (415)
T TIGR00767 242 ---------MVIEKAKRLVEHKKDVVILLDSITRLARAYNTV 274 (415)
T ss_pred ---------HHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHh
Confidence 011111111122233579999999976655443
No 185
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=49.37 E-value=43 Score=34.75 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=16.6
Q ss_pred eEEEecCCCCHHHHHHHHHHHhc
Q 005084 20 GLVILSSGLSLPKLIASVLLLHS 42 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~~y~ 42 (715)
.+|+=+.|.|||.++-.++....
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcC
Confidence 35556899999977777766443
No 186
>PF12846 AAA_10: AAA-like domain
Probab=47.97 E-value=22 Score=37.09 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCCeeEEEEecccccCCC-ChHHHHHHHHHhcCcCcc-EEeecCCCcccccCcchHHHHHHHhcc
Q 005084 113 TSNLAGLIILNTHALTEN-STETFICRIIKSLNREAY-IRAFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 113 ~~~ItgiVV~~AHr~~~~-~~eaFI~rlyr~~nk~gf-IkAfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
...-+.+++||||.+... ....++.+++|+.-+.|. +...|.+|..+...-. ...++.|...
T Consensus 218 ~~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~-~~~i~~n~~~ 281 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLPKSPI-EDAILANCNT 281 (304)
T ss_pred CCceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHhccch-HHHHHHhCCc
Confidence 355677899999999886 667788889988776654 4555888886542211 1577777654
No 187
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=47.36 E-value=71 Score=39.97 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=83.0
Q ss_pred eEEEecCCCCHHHHHHHHHH--Hhc-CCC-CEEEEecCCHhHHHHHHHHhCCCC---CCCCeee--cCCC-ChhhHHHh-
Q 005084 20 GLVILSSGLSLPKLIASVLL--LHS-PSQ-GTLLLLSSSPNLKSQIIHYLAPNA---PLLPSEI--TADL-PANHRHTL- 88 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~--~y~-~~~-~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~i--tge~-~~~~R~~l- 88 (715)
|++.=.-|||+|.-|-.||| +-| ..+ +.|||+-|-.....|+.++-+=.. ...+..| -+.+ .+.+|..+
T Consensus 699 cILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L 778 (1567)
T KOG1015|consen 699 CILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYML 778 (1567)
T ss_pred hHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHH
Confidence 34444569999999999999 333 333 578999998888888777643211 1112211 1233 34556533
Q ss_pred --h-cCCCEEEECc---hHH-----------HHHhhcCCCCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCccEE
Q 005084 89 --Y-SSGQIFFVTP---RIL-----------IVDLLTQRLPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 89 --Y-~~ggV~fvTp---rIL-----------~~DLLs~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gfIk 150 (715)
| .+|||+.+-- ||| .-++...-++|. -..+|.||||-+.. .++-+-++.-.|.+.+ .
T Consensus 779 ~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpG-PD~vVCDE~HiLKNeksa~Skam~~irtkRR----I 853 (1567)
T KOG1015|consen 779 QRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPG-PDFVVCDEGHILKNEKSAVSKAMNSIRTKRR----I 853 (1567)
T ss_pred HHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCC-CCeEEecchhhhccchHHHHHHHHHHHhhee----E
Confidence 4 4588888753 333 345555555554 24577899999966 5566666666665554 6
Q ss_pred eecCCCcc
Q 005084 151 AFSDKPTA 158 (715)
Q Consensus 151 AfSdsP~s 158 (715)
++|-+|-.
T Consensus 854 ~LTGTPLQ 861 (1567)
T KOG1015|consen 854 ILTGTPLQ 861 (1567)
T ss_pred EeecCchh
Confidence 88988864
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=46.61 E-value=1.1e+02 Score=36.83 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh----cCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH----SPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y----~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
++.|+.-+..++.. +-++|.=+.|=|||.+++.++... ..+...|.+++||---...+.+.+.
T Consensus 154 ~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 35788888887765 245566688999999999888733 1223578888999988888877664
No 189
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=44.95 E-value=60 Score=36.70 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=89.9
Q ss_pred CCeEEEecCCCCHHHHHH--HHHH-Hh--------cCCCCEEEEecCCHhHHHHH-------HHHhCCCCCCCCe--eec
Q 005084 18 NGGLVILSSGLSLPKLIA--SVLL-LH--------SPSQGTLLLLSSSPNLKSQI-------IHYLAPNAPLLPS--EIT 77 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iva--~ll~-~y--------~~~~~lVlvl~~t~~~~~~i-------~~~L~~~~~~~~~--~it 77 (715)
.|-+=|.-||=|+|.++. .+|. +- ...|..-|++-|+..+..|. -..|...+.+... .--
T Consensus 208 RDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~Lci 287 (610)
T KOG0341|consen 208 RDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCI 287 (610)
T ss_pred CceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhh
Confidence 466777889999984332 2221 11 23467788888888887652 3344443322111 223
Q ss_pred CCCChhhHHHhhcCC-CEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCC
Q 005084 78 ADLPANHRHTLYSSG-QIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 78 ge~~~~~R~~lY~~g-gV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
|.++..+--+.-..| -++++||-=|. |||. ..++++-+.-+..|||+|..+---|--|-.+|--....---+-||++
T Consensus 288 GG~~v~eql~~v~~GvHivVATPGRL~-DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSAT 366 (610)
T KOG0341|consen 288 GGVPVREQLDVVRRGVHIVVATPGRLM-DMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSAT 366 (610)
T ss_pred cCccHHHHHHHHhcCeeEEEcCcchHH-HHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeecc
Confidence 566766666666555 36778888775 5555 77889999999999999999876666655544322211224567765
Q ss_pred CcccccCcchHHHHHHH
Q 005084 156 PTAMVSGFAKTERIMKS 172 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~ 172 (715)
=- .++|..-+.
T Consensus 367 MP------~KIQ~FAkS 377 (610)
T KOG0341|consen 367 MP------KKIQNFAKS 377 (610)
T ss_pred cc------HHHHHHHHh
Confidence 32 456555443
No 190
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.66 E-value=1.4e+02 Score=35.50 Aligned_cols=82 Identities=16% Similarity=0.322 Sum_probs=55.9
Q ss_pred EEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHHHHhhcCCCCCCCeeEEEE
Q 005084 47 TLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILIVDLLTQRLPTSNLAGLII 121 (715)
Q Consensus 47 lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV 121 (715)
.+||.-.+....+.+.+.|.... ..+..++|+++..+|..+. .+| .|+++| |++.-=|++.+|+.+|.
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT------dv~arGIDip~V~~VIn 331 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT------DVAARGLHIDGVKYVYN 331 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe------hhhhcCCCccCCCEEEE
Confidence 34444455556667766675432 3578899999999988654 444 566666 78888899999998887
Q ss_pred ecccccCCCChHHHHHHH
Q 005084 122 LNTHALTENSTETFICRI 139 (715)
Q Consensus 122 ~~AHr~~~~~~eaFI~rl 139 (715)
... +.+.+.|+=|.
T Consensus 332 yd~----P~s~~~yvqRi 345 (572)
T PRK04537 332 YDL----PFDAEDYVHRI 345 (572)
T ss_pred cCC----CCCHHHHhhhh
Confidence 654 45566665443
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=43.45 E-value=45 Score=37.58 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=58.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHH-Hhc---CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC
Q 005084 16 EPNGGLVILSSGLSLPKLIASVLL-LHS---PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 16 ~~~d~LvVL~tGLG~~~Iva~ll~-~y~---~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ 91 (715)
.++.+|++=+.|-|||.++..++. +-. +....+++++-++.+...|.+.+.. .+..-+.+-++..|...+.
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~----~Vvast~de~~~~~~~v~~- 206 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG----EVYASTFDRPPDEHIRVAE- 206 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh----hEEeecCCCCHHHHHHHHH-
Confidence 466889999999999988877766 322 1123566777777777666555532 1222244456666655541
Q ss_pred CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC
Q 005084 92 GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS 131 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~ 131 (715)
....+...-..-..=..||+|+.+|....|
T Consensus 207 ----------~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~ 236 (380)
T PRK12608 207 ----------LVLERAKRLVEQGKDVVILLDSLTRLARAY 236 (380)
T ss_pred ----------HHHHHHHHHHHcCCCEEEEEeCcHHHHHHH
Confidence 111222222222234567999998864433
No 192
>PRK04296 thymidine kinase; Provisional
Probab=42.28 E-value=1.3e+02 Score=30.11 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=23.0
Q ss_pred EEEecC-CCCHHHHHHHHHHHhcCCCCEEEEecC
Q 005084 21 LVILSS-GLSLPKLIASVLLLHSPSQGTLLLLSS 53 (715)
Q Consensus 21 LvVL~t-GLG~~~Iva~ll~~y~~~~~lVlvl~~ 53 (715)
-|+.|. |=|||..+..++..+...+..|+++.+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 345555 999998887887755444677777754
No 193
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=41.36 E-value=61 Score=39.21 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhc----CCCCeEEEecCCCCHHH-HHHHHHHH--hc-------CCCCEEEEecCCHhHHHH---HHHHh
Q 005084 3 LEFHQHIIAELLQ----EPNGGLVILSSGLSLPK-LIASVLLL--HS-------PSQGTLLLLSSSPNLKSQ---IIHYL 65 (715)
Q Consensus 3 L~YQ~~I~~~~l~----~~~d~LvVL~tGLG~~~-Iva~ll~~--y~-------~~~~lVlvl~~t~~~~~~---i~~~L 65 (715)
++.|++-+.=++- .+..|.+-..-|||||. .++.+++- -+ +..+.-||+.|-...-++ |...+
T Consensus 327 mpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl 406 (901)
T KOG4439|consen 327 MPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVARRL 406 (901)
T ss_pred chhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHHHHH
Confidence 4556655544432 34478999999999997 56677661 11 112236666666655555 33334
Q ss_pred CCCCCCCCeeecCCCChhhHHHhhcCCCEEEECchHHHH---Hhhc---CCCCCCCe--eEEEEecccccCC-CChHHHH
Q 005084 66 APNAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIV---DLLT---QRLPTSNL--AGLIILNTHALTE-NSTETFI 136 (715)
Q Consensus 66 ~~~~~~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~---DLLs---~ri~~~~I--tgiVV~~AHr~~~-~~~eaFI 136 (715)
..+. ..+-+..|.---+-+.+-...--|+.-|-+++.| |=+. +.=|+-.| +-||.||||.|.. +++-+-.
T Consensus 407 ~~n~-LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~A 485 (901)
T KOG4439|consen 407 EQNA-LSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKA 485 (901)
T ss_pred hhcc-eEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHH
Confidence 3321 1122334432222233444455677777777766 1111 00111111 3478999999976 4444445
Q ss_pred HHHHHhcCcCccEEeecCCCcc
Q 005084 137 CRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 137 ~rlyr~~nk~gfIkAfSdsP~s 158 (715)
+=-.+.+++| |+|.+|-.
T Consensus 486 VC~L~a~~RW----clTGTPiq 503 (901)
T KOG4439|consen 486 VCKLSAKSRW----CLTGTPIQ 503 (901)
T ss_pred HHHHhhccee----ecccCccc
Confidence 5567778887 56888864
No 194
>PRK04841 transcriptional regulator MalT; Provisional
Probab=41.28 E-value=66 Score=39.57 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=57.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHH-H---HHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCE
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKS-Q---IIHYLAPNAPLLPSEITADLPANHRHTLYSSGQI 94 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~-~---i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV 94 (715)
=+||+-|-|-|||.+++.+++-.. ....+-+...+.+.. + |...+.... +. ..+. . ..+....+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~---~~----~~~~-~-~~~~~~~~- 101 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN--NLGWYSLDESDNQPERFASYLIAALQQAT---NG----HCSK-S-EALAQKRQ- 101 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC--CeEEEecCcccCCHHHHHHHHHHHHHHhc---Cc----ccch-h-hhhhccCC-
Confidence 479999999999999998876322 233344544443322 2 333332110 00 0000 0 11111111
Q ss_pred EEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcC
Q 005084 95 FFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNRE 146 (715)
Q Consensus 95 ~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~ 146 (715)
..+..-+...++...-....=..||||++|.+.+.+...++..+.+....+
T Consensus 102 -~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~ 152 (903)
T PRK04841 102 -YASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPEN 152 (903)
T ss_pred -cCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCC
Confidence 112222333333321122223668999999998776667777777765443
No 195
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=41.27 E-value=1.2e+02 Score=30.91 Aligned_cols=26 Identities=4% Similarity=0.041 Sum_probs=17.6
Q ss_pred eeEEEEecccccCCCChHHHHHHHHHh
Q 005084 116 LAGLIILNTHALTENSTETFICRIIKS 142 (715)
Q Consensus 116 ItgiVV~~AHr~~~~~~eaFI~rlyr~ 142 (715)
...||||++|.+.+.... .+..++..
T Consensus 91 ~~~liiDdi~~l~~~~~~-~L~~~~~~ 116 (227)
T PRK08903 91 AELYAVDDVERLDDAQQI-ALFNLFNR 116 (227)
T ss_pred CCEEEEeChhhcCchHHH-HHHHHHHH
Confidence 456999999998765443 44555654
No 196
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=41.09 E-value=2e+02 Score=28.89 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=20.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCC
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSS 54 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t 54 (715)
+-+++=++|-|||.++..+.......+.-++.++++
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 445556799999977766655322223334444443
No 197
>PRK08727 hypothetical protein; Validated
Probab=40.86 E-value=1.3e+02 Score=31.18 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=22.0
Q ss_pred CeEEE-ecCCCCHHHHHHHHHHHhcCCCCEEEEecC
Q 005084 19 GGLVI-LSSGLSLPKLIASVLLLHSPSQGTLLLLSS 53 (715)
Q Consensus 19 d~LvV-L~tGLG~~~Iva~ll~~y~~~~~lVlvl~~ 53 (715)
+.+++ =|+|.|||.++..+.+.....+..|..+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 44444 468999998888887743333445555553
No 198
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.62 E-value=63 Score=39.24 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHHHHHH---HhcCCCCeEEEecCCCCHH-HHHHHHHHHhc--CCCCEEEEecCCHhHHHHHHHHhCC
Q 005084 4 EFHQHIIAE---LLQEPNGGLVILSSGLSLP-KLIASVLLLHS--PSQGTLLLLSSSPNLKSQIIHYLAP 67 (715)
Q Consensus 4 ~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~-~Iva~ll~~y~--~~~~lVlvl~~t~~~~~~i~~~L~~ 67 (715)
+-|.+++.+ ++.+++++|+=.|||-||| .+++.-|.+-. +....|+.+-.|.....|+.++|+.
T Consensus 13 ~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 13 PEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred HHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 567777766 4667779999999999999 23333333211 2124666677777666666666643
No 199
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=40.57 E-value=45 Score=42.32 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=39.9
Q ss_pred CCeEEEecCCchhhhhh----hhhhccCCCCceeEEEEEecchhHHHHHHHHHHHHHhHHHHHHhccc
Q 005084 643 PFVIVVYHPDMSFVRQI----EVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKS 706 (715)
Q Consensus 643 P~~IImYdpd~~FIR~i----EvY~A~~p~~~lrVYFm~Y~~SvEEQ~yL~~irrEK~AFe~LIreKa 706 (715)
=++||+|||+-.--..+ .+||-. ...++.||-|+..+|+||.-|-... .|.++..++=+.+
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIG-Qkk~V~VyRLIt~gTIEEkIlera~--~Kl~Ld~~Vi~~g 623 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIG-QKKEVQVFRFCTEYTIEEKVIERAY--KKLALDALVIQQG 623 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcC-CCceEEEEEEEeCCcHHHHHHHHHH--HHHHHHHHHHhcC
Confidence 36899999885443322 233322 3357999999999999999876544 4455555554443
No 200
>PLN03025 replication factor C subunit; Provisional
Probab=40.21 E-value=2e+02 Score=31.16 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=24.2
Q ss_pred CeEEEecCCCCHHHHHHHHHH-HhcCC-CCEEEEecCCH
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LHSPS-QGTLLLLSSSP 55 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y~~~-~~lVlvl~~t~ 55 (715)
+-|+.=|.|.|||.++-.+.+ ++++. ...++-+|+++
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 457777999999988877777 55432 23355555543
No 201
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=40.02 E-value=2e+02 Score=25.57 Aligned_cols=88 Identities=14% Similarity=0.277 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCCC--EEEECchHHHH
Q 005084 30 LPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSGQ--IFFVTPRILIV 104 (715)
Q Consensus 30 ~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~gg--V~fvTprIL~~ 104 (715)
+..-+.+++..+..+++.+||.-++....+.+.+.|... ...+..++|.++..+|..+ |.+|. ++++|.
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~----- 86 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP-GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD----- 86 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-----
Confidence 444555666643324556666677777777777777542 2357889999988777654 55666 555443
Q ss_pred HhhcCCCCCCCeeEEEEecc
Q 005084 105 DLLTQRLPTSNLAGLIILNT 124 (715)
Q Consensus 105 DLLs~ri~~~~ItgiVV~~A 124 (715)
++..-+++..+..+|+...
T Consensus 87 -~~~~G~d~~~~~~vi~~~~ 105 (131)
T cd00079 87 -VIARGIDLPNVSVVINYDL 105 (131)
T ss_pred -hhhcCcChhhCCEEEEeCC
Confidence 3455566667777887766
No 202
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.55 E-value=1.3e+02 Score=33.74 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHHHHhhcCCCCCCCeeEEEEeccccc
Q 005084 53 SSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHAL 127 (715)
Q Consensus 53 ~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~ 127 (715)
.+....+.+.+.|...+ ..+..++|+++.++|.+.. .+| .|+++| |+++.=|++.+|+.+|-...
T Consensus 263 ~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT------dv~~rGiDip~v~~VI~~d~--- 332 (423)
T PRK04837 263 NTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT------DVAARGLHIPAVTHVFNYDL--- 332 (423)
T ss_pred CCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe------chhhcCCCccccCEEEEeCC---
Confidence 45555666766775432 3578899999999997654 444 567777 78999999999999887654
Q ss_pred CCCChHHHHHH
Q 005084 128 TENSTETFICR 138 (715)
Q Consensus 128 ~~~~~eaFI~r 138 (715)
+.+.+.|+-|
T Consensus 333 -P~s~~~yiqR 342 (423)
T PRK04837 333 -PDDCEDYVHR 342 (423)
T ss_pred -CCchhheEec
Confidence 4445555443
No 203
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.38 E-value=1.8e+02 Score=36.63 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=44.9
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCc-CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNR-EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
....+||||||+++.....++ ++..-+-.. .-||.+ |..|..+ +..++. +...+.|.|=-..++..+|.
T Consensus 119 k~KViIIDEAh~LT~eAqNAL-LKtLEEPP~~vrFILa-TTe~~kL------l~TIlS--RCq~f~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNAL-LKTLEEPPEHVKFLLA-TTDPQKL------PVTVLS--RCLQFNLKSLTQDEIGTQLN 188 (944)
T ss_pred CcEEEEEechHhcCHHHHHHH-HHHHhccCCCeEEEEE-CCCchhc------hHHHHH--hheEEeCCCCCHHHHHHHHH
Confidence 456799999999987666555 444443222 347776 6666643 223332 34667777777888888885
Q ss_pred c
Q 005084 194 R 194 (715)
Q Consensus 194 ~ 194 (715)
.
T Consensus 189 ~ 189 (944)
T PRK14949 189 H 189 (944)
T ss_pred H
Confidence 4
No 204
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=39.21 E-value=82 Score=38.29 Aligned_cols=42 Identities=5% Similarity=-0.014 Sum_probs=30.1
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEecCCHhHHHH
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSP-SQGTLLLLSSSPNLKSQ 60 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~-~~~lVlvl~~t~~~~~~ 60 (715)
=+.+..|||-||+.++..++..+.. .+-.|++.++...-.+.
T Consensus 189 ~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~e 231 (752)
T PHA03333 189 YTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLT 231 (752)
T ss_pred ceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHH
Confidence 6778899999999888855553222 35678888887766544
No 205
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=39.12 E-value=44 Score=29.94 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHh
Q 005084 416 DHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 416 ~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
..+++||||++.+.+.++.++|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~ 50 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK 50 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh
Confidence 457999999999999999998853
No 206
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.47 E-value=39 Score=35.95 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=76.2
Q ss_pred CeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEE
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFF 96 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~f 96 (715)
|-++-=|.|.|||.-+-.|-+ +- ..-.--||=||+++. ..+- ....|.+++.+..|
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde--------------RGID------vVRn~IK~FAQ~kv-- 107 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE--------------RGID------VVRNKIKMFAQKKV-- 107 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc--------------cccH------HHHHHHHHHHHhhc--
Confidence 345556789999966655555 21 111122444444432 1122 23456677776654
Q ss_pred ECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHH--HHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhc
Q 005084 97 VTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETF--ICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 97 vTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaF--I~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
.+|+..-.-||.|||+..|..-+.|. ..++|- |..-|.+|--.+-- -++|+|.-|--|+
T Consensus 108 -------------~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS--~ttRFalaCN~s~K----IiEPIQSRCAiLR 168 (333)
T KOG0991|consen 108 -------------TLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS--NTTRFALACNQSEK----IIEPIQSRCAILR 168 (333)
T ss_pred -------------cCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc--ccchhhhhhcchhh----hhhhHHhhhHhhh
Confidence 46777888899999999998766654 234664 55667777665554 5899999999998
Q ss_pred cCeeE
Q 005084 175 IRKLH 179 (715)
Q Consensus 175 I~~v~ 179 (715)
.+++.
T Consensus 169 yskls 173 (333)
T KOG0991|consen 169 YSKLS 173 (333)
T ss_pred hcccC
Confidence 77663
No 207
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=37.13 E-value=1.2e+02 Score=36.32 Aligned_cols=120 Identities=10% Similarity=-0.022 Sum_probs=69.7
Q ss_pred CeEEEe--cCCCCHHHHHHHHHH--HhcCC----CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc
Q 005084 19 GGLVIL--SSGLSLPKLIASVLL--LHSPS----QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS 90 (715)
Q Consensus 19 d~LvVL--~tGLG~~~Iva~ll~--~y~~~----~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~ 90 (715)
|+.+|. +-|=|||.|+-+=+. +|... ++=|||++|.+...++|...|-+.+
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLG--------------------- 284 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELG--------------------- 284 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhc---------------------
Confidence 554444 579999987654444 44322 2339999999999999998876532
Q ss_pred CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHH
Q 005084 91 SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIM 170 (715)
Q Consensus 91 ~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vm 170 (715)
.+||.-.|+.=+..++| +.. +-.--+.+.|.+++-.-+..++-+..- --+++-..+
T Consensus 285 e~~V~q~Tf~e~a~~iL----g~~----------------s~d~~lt~~~~e~~~~d~~~~~a~~a~----k~~~~~~~~ 340 (747)
T COG3973 285 EEGVVQETFEEWALAIL----GLK----------------SEDLELTRRTLEKLLMDTDLGIAALAW----KRSLLFGDA 340 (747)
T ss_pred cCceeeccHHHHHHHhc----CCC----------------CchhHHHHHHHhhhccchHHHHHHHHh----hhhhHHHHH
Confidence 46777788776655544 333 122245566666654333333322221 113344555
Q ss_pred HHhccCeeEeccC
Q 005084 171 KSLFIRKLHLWPR 183 (715)
Q Consensus 171 k~L~I~~v~l~PR 183 (715)
-++.+..++.|--
T Consensus 341 i~~~v~~is~e~~ 353 (747)
T COG3973 341 IDLDVVRISLEKK 353 (747)
T ss_pred HHHHhhhhhhhhh
Confidence 5666666766643
No 208
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.12 E-value=1.7e+02 Score=35.71 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=37.7
Q ss_pred eeEEEEecccccCCCChHHHHHHHHHhcCc-CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhh
Q 005084 116 LAGLIILNTHALTENSTETFICRIIKSLNR-EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEEL 192 (715)
Q Consensus 116 ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l 192 (715)
-..+||||||+++.....++ ++..-+... .-||++ |.+|..+ ...|..-|..+.++. --..++...|
T Consensus 125 ~KViIIDEah~Ls~~AaNAL-LKTLEEPP~~v~FILa-Ttep~kL---lpTIrSRCq~f~f~~-----ls~eei~~~L 192 (700)
T PRK12323 125 FKVYMIDEVHMLTNHAFNAM-LKTLEEPPEHVKFILA-TTDPQKI---PVTVLSRCLQFNLKQ-----MPPGHIVSHL 192 (700)
T ss_pred ceEEEEEChHhcCHHHHHHH-HHhhccCCCCceEEEE-eCChHhh---hhHHHHHHHhcccCC-----CChHHHHHHH
Confidence 45699999999988766553 444444333 356666 5556654 234444444444333 3344555555
No 209
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=36.89 E-value=64 Score=35.28 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=31.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCC---C----CEEEEecCCHhH-HHHHHHHhC
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPS---Q----GTLLLLSSSPNL-KSQIIHYLA 66 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~---~----~lVlvl~~t~~~-~~~i~~~L~ 66 (715)
|-|+|=.+|.|||.|+-.|...|.+. + .+|.|-.|..+. ..+....|.
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 67888899999999999999977421 1 245554444444 444444443
No 210
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.53 E-value=1.1e+02 Score=35.06 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=66.7
Q ss_pred CeEEEecCCCCHHHHHHHHHH----Hh--cCCCCEEEEecCCHhHHHHHHHHhCCCCC--C-CCeeecCCCC-hhhHHHh
Q 005084 19 GGLVILSSGLSLPKLIASVLL----LH--SPSQGTLLLLSSSPNLKSQIIHYLAPNAP--L-LPSEITADLP-ANHRHTL 88 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~----~y--~~~~~lVlvl~~t~~~~~~i~~~L~~~~~--~-~~~~itge~~-~~~R~~l 88 (715)
|-.-+-=||=|+| +|-+|- +- ...|-..+++.||..+..|-....+..+. . ....+.|.-+ -++=..|
T Consensus 60 dvv~martgsgkt--aaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l 137 (529)
T KOG0337|consen 60 DVVGMARTGSGKT--AAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL 137 (529)
T ss_pred ccceeeecCCcch--hhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh
Confidence 3333344788998 232222 21 23345788999999888775545443211 1 1222334333 3444455
Q ss_pred hcCCCEEEECchHHH---HHhhcCCCCCCCeeEEEEecccccCCC
Q 005084 89 YSSGQIFFVTPRILI---VDLLTQRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 89 Y~~ggV~fvTprIL~---~DLLs~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
-..+-|+++||-++. ++|. +.+..|.-+|+|||.|+-+-
T Consensus 138 ~~npDii~ATpgr~~h~~vem~---l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 138 NENPDIIIATPGRLLHLGVEMT---LTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred ccCCCEEEecCceeeeeehhee---ccccceeeeeehhhhHHHhh
Confidence 557889999998864 5554 78899999999999998775
No 211
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.17 E-value=92 Score=35.49 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=44.9
Q ss_pred eEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhcc
Q 005084 117 AGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 117 tgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~ 194 (715)
+.++|||.||.-.+-+++|.- +.+...--||=|-|.+|. |.-. ..|-.- .+=.+|.|=-..++..-|++
T Consensus 106 tiLflDEIHRfnK~QQD~lLp--~vE~G~iilIGATTENPs-F~ln-~ALlSR-----~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLP--HVENGTIILIGATTENPS-FELN-PALLSR-----ARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred eEEEEehhhhcChhhhhhhhh--hhcCCeEEEEeccCCCCC-eeec-HHHhhh-----hheeeeecCCHHHHHHHHHH
Confidence 678999999999999998864 345566678889999997 4321 122111 22235556666666666543
No 212
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=35.78 E-value=1e+02 Score=31.44 Aligned_cols=111 Identities=10% Similarity=0.061 Sum_probs=55.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEecCCHhHHHHHHHHhCC-CCCCCCeeecCCCChh------hHHHhhc
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHS-PSQGTLLLLSSSPNLKSQIIHYLAP-NAPLLPSEITADLPAN------HRHTLYS 90 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~-~~~~lVlvl~~t~~~~~~i~~~L~~-~~~~~~~~itge~~~~------~R~~lY~ 90 (715)
-.+|.=++|-|||.++.+++.-.. ..+.-|+.+....+..+.+...+.. .....-....+..... +....+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIGELK 94 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 345566789999988888877332 2255666666655544444333221 1111112223333321 1223344
Q ss_pred CCCEEEECch-HHHHHhhcC---CCCCCCeeEEEEecccccCC
Q 005084 91 SGQIFFVTPR-ILIVDLLTQ---RLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 91 ~ggV~fvTpr-IL~~DLLs~---ri~~~~ItgiVV~~AHr~~~ 129 (715)
...+++.... +-..++... -+.-..+..||||..+.+..
T Consensus 95 ~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 95 ELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 5566664322 222223211 11112678899999987744
No 213
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=35.68 E-value=2e+02 Score=33.11 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=23.9
Q ss_pred CeEEEe-cCCCCHHHHHHHHHHHhcCCCCEEEEecCC
Q 005084 19 GGLVIL-SSGLSLPKLIASVLLLHSPSQGTLLLLSSS 54 (715)
Q Consensus 19 d~LvVL-~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t 54 (715)
|.|++. |.|+|||.++..+.......+..|+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 566666 799999988877776332235556666653
No 214
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=35.47 E-value=52 Score=39.01 Aligned_cols=206 Identities=20% Similarity=0.242 Sum_probs=103.3
Q ss_pred CCCCEEEEecCCHhHH-HHHHH----HhCCC---CCCCCeeecCC--CChhhHHHhhcCCCEEEEC---chHHHHH----
Q 005084 43 PSQGTLLLLSSSPNLK-SQIIH----YLAPN---APLLPSEITAD--LPANHRHTLYSSGQIFFVT---PRILIVD---- 105 (715)
Q Consensus 43 ~~~~lVlvl~~t~~~~-~~i~~----~L~~~---~~~~~~~itge--~~~~~R~~lY~~ggV~fvT---prIL~~D---- 105 (715)
..+.+.+|+.-.+++. .++.. .+... ....+++..|+ .+|.+=.++-.+.+|+.+- +-+..++
T Consensus 10 kk~~l~~~~i~~~~e~~~~i~~~~~g~~~~~~g~~~~~~~v~~ge~~~~P~~vl~lLrs~ri~~~~ane~e~e~~l~~~~ 89 (830)
T COG1202 10 KKGELEFVLIENPPEDLSEIRNQKAGRLKRLIGRKIRLFTVLKGEQLRPPSEVLKLLRSARIILLPANEEEIEEMLKSYN 89 (830)
T ss_pred ccceEEEEEcCCChhhHHHHHHHhhchhhcccCCCcceEEeecCCcCCCHHHHHHHHHhccEEeecCCcHHHHHHHHHhh
Confidence 3467777776666553 23332 11111 12356677777 4778888888888776666 4444333
Q ss_pred ------------hhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHh
Q 005084 106 ------------LLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 106 ------------LLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
++.||+.+=--.-=+...-+-+.+.|+.--+-|..|-... -.+ -+.++++++..+
T Consensus 90 ~~~~~~~lCr~Cl~~~r~t~lt~~~~~~y~~e~IC~~Ca~Eelkrelr~~~~----------~~g---~~e~~erlL~~~ 156 (830)
T COG1202 90 LSAEVARLCRHCLLEGRYTVLTEGNRIKYGGEEICERCAEEELKRELRFRGN----------SIG---MLEQLERLLHKF 156 (830)
T ss_pred hhhHHHHHhHHHHhcCceeeeecCcceeECCEehHHHhHHHHHHHHHhhhcc----------cch---HHHHHHHHHHHh
Confidence 4556655211111122333445566777777666653221 010 234444544432
Q ss_pred c-cCee--EeccCCchhhhhhhccC------CCeEEEE---EecCCccHHHHHHHHHHHHHHHHHHHHHcCC---CCCCc
Q 005084 174 F-IRKL--HLWPRFQVNVSEELERE------PPVVVDV---RVPMSKYMGGIQKAILEVMDACLKEMRKTNK---VDVED 238 (715)
Q Consensus 174 ~-I~~v--~l~PRf~~~V~~~l~~~------~~~V~Ei---~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~---ld~~~ 238 (715)
. +.+| -+-|||++.-.+-+-+. ..+|..+ .+++|+.++.| |++.+. +-+.-
T Consensus 157 rdlDkvl~ml~p~fdP~~~pE~TryD~v~a~~~~~~r~~vdeLdipe~fk~~--------------lk~~G~~eLlPVQ~ 222 (830)
T COG1202 157 RDLDKVLEMLDPRFDPLEDPELTRYDEVTAETDEVERVPVDELDIPEKFKRM--------------LKREGIEELLPVQV 222 (830)
T ss_pred ccHHHHHHHhCccCCcccCcccccceeeeccccccccccccccCCcHHHHHH--------------HHhcCcceecchhh
Confidence 2 1222 35688777766666431 1111111 23444444432 333332 33456
Q ss_pred cchhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHH
Q 005084 239 LTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLD 283 (715)
Q Consensus 239 ~t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~ 283 (715)
+.++++|-.. ..+|- -..+...|-|+.+|.-+.+|+.
T Consensus 223 laVe~GLLeG-----~nllV---VSaTasGKTLIgElAGi~~~l~ 259 (830)
T COG1202 223 LAVEAGLLEG-----ENLLV---VSATASGKTLIGELAGIPRLLS 259 (830)
T ss_pred hhhhhccccC-----CceEE---EeccCCCcchHHHhhCcHHHHh
Confidence 7777776521 11221 1123345889999998888876
No 215
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=35.41 E-value=1.8e+02 Score=37.47 Aligned_cols=62 Identities=5% Similarity=-0.062 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 5 FHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
=|++.+..+.....=++|+=+-|=|||.++..+...+...|..|+.++||-.-...+.+...
T Consensus 385 eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~G 446 (1102)
T PRK13826 385 EQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAG 446 (1102)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhC
Confidence 37777777765422234455789999999999888776667889999999988888876554
No 216
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=35.40 E-value=2.3e+02 Score=31.89 Aligned_cols=84 Identities=12% Similarity=0.270 Sum_probs=56.3
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc---CC--CEEEECchHHHHHhhcCCCCCCCeeEE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS---SG--QIFFVTPRILIVDLLTQRLPTSNLAGL 119 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~---~g--gV~fvTprIL~~DLLs~ri~~~~Itgi 119 (715)
...+||.-.+....+.+.+.|... ...+..++|+++..+|...+. +| .|+++| |++..=|++.+|+.+
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT------d~~~~GiDip~v~~V 317 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA-GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT------DVAARGIDIDDVSHV 317 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC-CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc------cccccCccCCCCCEE
Confidence 344555555666666777667542 235678999999999986654 43 456666 888989999999998
Q ss_pred EEecccccCCCChHHHHHHH
Q 005084 120 IILNTHALTENSTETFICRI 139 (715)
Q Consensus 120 VV~~AHr~~~~~~eaFI~rl 139 (715)
|-... +.+.+.|+-|.
T Consensus 318 I~~d~----p~s~~~yiqr~ 333 (434)
T PRK11192 318 INFDM----PRSADTYLHRI 333 (434)
T ss_pred EEECC----CCCHHHHhhcc
Confidence 85442 44556665443
No 217
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=34.91 E-value=1.1e+02 Score=38.49 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCC-CCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHHHHhhcCCCCCCCeeE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPN-APLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILIVDLLTQRLPTSNLAG 118 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~~DLLs~ri~~~~Itg 118 (715)
++.|+++.++....+.+.+.|... +...+..++|.++.++|.+.. .+| .|+++| |++..=+|+.+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT------~iie~GIDIp~v~~ 733 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT------TIIETGIDIPNANT 733 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC------ChhhcccccccCCE
Confidence 556666666665555555555432 123577899999999998653 333 455555 46778899999999
Q ss_pred EEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 119 LIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 119 iVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
||+++|++..-..-+-.+-|.=| .++.|+..-|...+..
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR-~g~~g~aill~~~~~~ 772 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGR-SKKKAYAYLLYPHQKA 772 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCC-CCCCeEEEEEECCccc
Confidence 99999987321111122222222 2446777777665543
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=34.57 E-value=53 Score=33.88 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEe--cCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHH-------HHhCCCCCCC
Q 005084 4 EFHQHIIAELLQEPNGGLVIL--SSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQII-------HYLAPNAPLL 72 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL--~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~-------~~L~~~~~~~ 72 (715)
+.|+..+..++ + +.+|++ |-|=|||.++...-. +. ...-..+++.-|.-+.-+.++ +.+. +...
T Consensus 7 ~~Q~~~~~al~-~--~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~--p~~~ 81 (205)
T PF02562_consen 7 EEQKFALDALL-N--NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKME--PYLR 81 (205)
T ss_dssp HHHHHHHHHHH-H---SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-----------TTTH
T ss_pred HHHHHHHHHHH-h--CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHH--HHHH
Confidence 35666666666 4 444444 789999965543332 22 222234555544443212211 1111 0100
Q ss_pred C-e-eecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 73 P-S-EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 73 ~-~-~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
| . .+..=.....-..++.+|.|-+.+.. ++.||= +++ +.||||||..++....-.++.|+ ..|.+-.|.
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~-----~iRGrt-~~~-~~iIvDEaQN~t~~~~k~ilTR~--g~~skii~~ 152 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEIEPLA-----FIRGRT-FDN-AFIIVDEAQNLTPEELKMILTRI--GEGSKIIIT 152 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEEEEGG-----GGTT---B-S-EEEEE-SGGG--HHHHHHHHTTB---TT-EEEEE
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEEEehh-----hhcCcc-ccc-eEEEEecccCCCHHHHHHHHccc--CCCcEEEEe
Confidence 0 0 11111245567788889999888765 456663 332 88999999999987777777664 233332222
Q ss_pred ---eecCCCcccccCcchHHHHHHH
Q 005084 151 ---AFSDKPTAMVSGFAKTERIMKS 172 (715)
Q Consensus 151 ---AfSdsP~sf~~g~~~l~~vmk~ 172 (715)
+..|.|....+|+..+.+.++.
T Consensus 153 GD~~Q~D~~~~~~nGl~~~~~~~~~ 177 (205)
T PF02562_consen 153 GDPSQIDLPLDYNNGLTYAIERLKG 177 (205)
T ss_dssp E--------------THHHHHHTTT
T ss_pred cCceeecCCCCCCchHHHHHHHhcC
Confidence 3678886555677666666554
No 219
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.42 E-value=1.4e+02 Score=36.36 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=40.8
Q ss_pred eeEEEEecccccCCCChHHHHHHHHHhcCc-CccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 116 LAGLIILNTHALTENSTETFICRIIKSLNR-EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 116 ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk-~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
-..+||||||+++..... .+++...+... ..||.+-++ |..+ .. .+.. +...+.+.|--..++...|.
T Consensus 119 ~KV~IIDEVh~LS~~A~N-ALLKtLEEPP~~v~FILaTtd-~~kI---p~---TIlS--RCq~feFkpLs~eEI~k~L~ 187 (702)
T PRK14960 119 FKVYLIDEVHMLSTHSFN-ALLKTLEEPPEHVKFLFATTD-PQKL---PI---TVIS--RCLQFTLRPLAVDEITKHLG 187 (702)
T ss_pred cEEEEEechHhcCHHHHH-HHHHHHhcCCCCcEEEEEECC-hHhh---hH---HHHH--hhheeeccCCCHHHHHHHHH
Confidence 356899999999876443 35665554332 357877655 4432 12 2222 23566777766777777774
No 220
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.35 E-value=2.8e+02 Score=31.69 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=27.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEecCCHh
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHS--PSQGTLLLLSSSPN 56 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~--~~~~lVlvl~~t~~ 56 (715)
.-++|=|+|-|||..++.|...+. ..+..|.++.+.+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 346666799999999999887553 34567888877663
No 221
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.21 E-value=5.6e+02 Score=30.90 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHHHHhh
Q 005084 33 LIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILIVDLL 107 (715)
Q Consensus 33 Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~~DLL 107 (715)
.+..++..+.....+|| + .+......+.+.|...+ .....++|+++.++|.+.. .+| .|+++| |++
T Consensus 235 ~L~~~L~~~~~~~~IVF-~-~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT------dv~ 305 (629)
T PRK11634 235 ALVRFLEAEDFDAAIIF-V-RTKNATLEVAEALERNG-YNSAALNGDMNQALREQTLERLKDGRLDILIAT------DVA 305 (629)
T ss_pred HHHHHHHhcCCCCEEEE-e-ccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc------chH
Confidence 33444443333233333 3 44555556666665432 2467899999999998764 333 466666 788
Q ss_pred cCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEeecCC
Q 005084 108 TQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAFSDK 155 (715)
Q Consensus 108 s~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSds 155 (715)
..=|++..|+.+|.... +.+.+.|+-|.=|.. .+.|...-|.+.
T Consensus 306 arGIDip~V~~VI~~d~----P~~~e~yvqRiGRtGRaGr~G~ai~~v~~ 351 (629)
T PRK11634 306 ARGLDVERISLVVNYDI----PMDSESYVHRIGRTGRAGRAGRALLFVEN 351 (629)
T ss_pred hcCCCcccCCEEEEeCC----CCCHHHHHHHhccccCCCCcceEEEEech
Confidence 88899999999886554 446677765543322 234444444443
No 222
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.13 E-value=2.4e+02 Score=31.98 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=27.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhc----CCCCEEEEecCCH
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHS----PSQGTLLLLSSSP 55 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~----~~~~lVlvl~~t~ 55 (715)
.-++|=|+|-|||..++.|.+.|. ..+..|.++.+..
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 346777999999999999987553 2356777777665
No 223
>PTZ00110 helicase; Provisional
Probab=34.06 E-value=3.3e+02 Score=32.14 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCCC--EEEECchHHHHHhhcCCCCCCCeeEE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSGQ--IFFVTPRILIVDLLTQRLPTSNLAGL 119 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~gg--V~fvTprIL~~DLLs~ri~~~~Itgi 119 (715)
+..+||.-.+....+.+...|...+ .....++|+++.++|..+ |.+|. |+++| |++..=|++.+|+.+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT------dv~~rGIDi~~v~~V 449 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT------DVASRGLDVKDVKYV 449 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc------chhhcCCCcccCCEE
Confidence 4455555566666777777775422 245679999999999855 55554 55555 788999999999999
Q ss_pred EEecccccCCCChHHHHHHH
Q 005084 120 IILNTHALTENSTETFICRI 139 (715)
Q Consensus 120 VV~~AHr~~~~~~eaFI~rl 139 (715)
|.... +.+.+.|+-|.
T Consensus 450 I~~d~----P~s~~~yvqRi 465 (545)
T PTZ00110 450 INFDF----PNQIEDYVHRI 465 (545)
T ss_pred EEeCC----CCCHHHHHHHh
Confidence 87654 45666776654
No 224
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=33.76 E-value=89 Score=38.37 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC------CCEEEECch
Q 005084 27 GLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS------GQIFFVTPR 100 (715)
Q Consensus 27 GLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~------ggV~fvTpr 100 (715)
--|+-.+++.||..+...|..||+..-+..-...+..+|.....-...-++|.++.+.|..+-.+ --||.+|+|
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred hcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 35888999999997767788999988888888888888873112246679999999999987543 347777877
Q ss_pred H
Q 005084 101 I 101 (715)
Q Consensus 101 I 101 (715)
+
T Consensus 608 v 608 (923)
T KOG0387|consen 608 V 608 (923)
T ss_pred c
Confidence 5
No 225
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=33.38 E-value=2.2e+02 Score=34.50 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=43.7
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..+||||||+++.....++ ++..-+-. ..-||++ |.+|..+ +..+.. +...+.|.|=-..++..+|.
T Consensus 119 ~~KV~IIDEah~Ls~~a~NAL-LKtLEEPp~~v~FIL~-Tt~~~kL------l~TI~S--RC~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNAL-LKTLEEPPEHVKFLLA-TTDPQKL------PVTILS--RCLQFHLKALDVEQIRQQLE 188 (647)
T ss_pred CCEEEEEechHhCCHHHHHHH-HHHHHcCCCCeEEEEe-cCCcccc------chHHHh--hheEeeCCCCCHHHHHHHHH
Confidence 345689999999998766554 55554433 3458887 6666643 122332 24566666666777777775
Q ss_pred c
Q 005084 194 R 194 (715)
Q Consensus 194 ~ 194 (715)
.
T Consensus 189 ~ 189 (647)
T PRK07994 189 H 189 (647)
T ss_pred H
Confidence 3
No 226
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=33.31 E-value=59 Score=39.25 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=32.2
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 379 EEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 379 Ee~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.+.-||..|.+.+.+.. ....+|||||++...|..|.+.|..
T Consensus 454 t~~~K~~aL~~~i~~~~-------------------~~~~pvLIft~t~~~se~L~~~L~~ 495 (656)
T PRK12898 454 TAAAKWAAVAARVRELH-------------------AQGRPVLVGTRSVAASERLSALLRE 495 (656)
T ss_pred CHHHHHHHHHHHHHHHH-------------------hcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 34559999888776642 1225799999999999999999954
No 227
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=33.24 E-value=95 Score=34.77 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=48.1
Q ss_pred hhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCc
Q 005084 106 LLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQ 185 (715)
Q Consensus 106 LLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~ 185 (715)
.++-.-.-..-..+|||+||++...++-++ ++..++......+.-+|.+|+.+ +..+. =+...+.+.|=-.
T Consensus 132 ~~~~~~~~~~~kVviIDead~m~~~aanaL-LK~LEepp~~~~~IL~t~~~~~l------lpti~--SRc~~i~l~~l~~ 202 (365)
T PRK07471 132 FFGLTAAEGGWRVVIVDTADEMNANAANAL-LKVLEEPPARSLFLLVSHAPARL------LPTIR--SRCRKLRLRPLAP 202 (365)
T ss_pred HhCcCcccCCCEEEEEechHhcCHHHHHHH-HHHHhcCCCCeEEEEEECCchhc------hHHhh--ccceEEECCCCCH
Confidence 333333334456789999999988776654 67777765566555689999842 11221 1244555555555
Q ss_pred hhhhhhhcc
Q 005084 186 VNVSEELER 194 (715)
Q Consensus 186 ~~V~~~l~~ 194 (715)
.++...|..
T Consensus 203 ~~i~~~L~~ 211 (365)
T PRK07471 203 EDVIDALAA 211 (365)
T ss_pred HHHHHHHHH
Confidence 666666543
No 228
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=33.10 E-value=80 Score=34.99 Aligned_cols=43 Identities=19% Similarity=0.036 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 382 PKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 382 PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
-|++.|.++++.+.+.... .+.+++||||++.+.|..+.+.|.
T Consensus 251 ~~~~~l~~l~~~i~~~~~~--------------~~~~k~LIf~nt~~~~~~l~~~L~ 293 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQ--------------LPGERGAIILDSLDEVNRLSDLLQ 293 (357)
T ss_pred hhHHHHHHHHHHHHHHHhc--------------cCCCeEEEEECCHHHHHHHHHHHh
Confidence 3556666676666543211 345799999999999999888774
No 229
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.78 E-value=1.8e+02 Score=27.40 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=30.0
Q ss_pred CeEEEecCCCCH--------HHHHHHHHHHhcCCCCEEEEecCC-----HhHHHHHHHHhCCC
Q 005084 19 GGLVILSSGLSL--------PKLIASVLLLHSPSQGTLLLLSSS-----PNLKSQIIHYLAPN 68 (715)
Q Consensus 19 d~LvVL~tGLG~--------~~Iva~ll~~y~~~~~lVlvl~~t-----~~~~~~i~~~L~~~ 68 (715)
|++|||+.|+.. .++...+-.+...+...+++-+.. ..+.+.+.+.+...
T Consensus 1 d~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~ 63 (150)
T cd06259 1 DAIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIEL 63 (150)
T ss_pred CEEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHc
Confidence 678999999993 445544433333345666666664 34666666665443
No 230
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.49 E-value=69 Score=36.13 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCCCHHHHHHH--HHHHh---cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCCh----hhHHHhhcCCCEEE
Q 005084 26 SGLSLPKLIAS--VLLLH---SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPA----NHRHTLYSSGQIFF 96 (715)
Q Consensus 26 tGLG~~~Iva~--ll~~y---~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~----~~R~~lY~~ggV~f 96 (715)
.|-|||..... |-+.- -.|+++.| .|+..++.|+.+.+...+ .+..+|..... .+| --....-|++
T Consensus 138 sGtGKTaaFvL~MLsrvd~~~~~PQ~iCL--aPtrELA~Q~~eVv~eMG--Kf~~ita~yair~sk~~r-G~~i~eqIvi 212 (477)
T KOG0332|consen 138 SGTGKTAAFVLTMLSRVDPDVVVPQCICL--APTRELAPQTGEVVEEMG--KFTELTASYAIRGSKAKR-GNKLTEQIVI 212 (477)
T ss_pred CCCchhHHHHHHHHHhcCccccCCCceee--CchHHHHHHHHHHHHHhc--CceeeeEEEEecCccccc-CCcchhheee
Confidence 47888832222 11111 12355444 888888888887776543 34455544321 122 1233456888
Q ss_pred ECchHHHHHhhc-CCCCCCCeeEEEEecccccCC
Q 005084 97 VTPRILIVDLLT-QRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 97 vTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~ 129 (715)
-||-++.-=++. ..+++++|..+|.|||.....
T Consensus 213 GTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~ 246 (477)
T KOG0332|consen 213 GTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMID 246 (477)
T ss_pred CCCccHHHHHHHHHhhChhhceEEEecchhhhhh
Confidence 888887655555 799999999999999987765
No 231
>PRK04195 replication factor C large subunit; Provisional
Probab=30.99 E-value=1.7e+02 Score=33.90 Aligned_cols=127 Identities=12% Similarity=0.073 Sum_probs=66.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH-HHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK-SQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~-~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
..|+.=|.|.|||.++..+..-+ +.-++.+|+++.-. ..|...+.... ....+.
T Consensus 41 ~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i~~~~--~~~sl~-------------------- 95 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVAGEAA--TSGSLF-------------------- 95 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHHHHhh--ccCccc--------------------
Confidence 56777799999997776666643 22356667765321 12222221100 000000
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccCCCC---hHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhc
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALTENS---TETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
| ..-..|||||||.+.+.. ....++++.. ..+.++|. ++..|... ....+...
T Consensus 96 -----------~----~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-~~~~~iIl-i~n~~~~~--~~k~Lrsr----- 151 (482)
T PRK04195 96 -----------G----ARRKLILLDEVDGIHGNEDRGGARAILELIK-KAKQPIIL-TANDPYDP--SLRELRNA----- 151 (482)
T ss_pred -----------C----CCCeEEEEecCcccccccchhHHHHHHHHHH-cCCCCEEE-eccCcccc--chhhHhcc-----
Confidence 0 123579999999998733 2233445554 44556655 55555432 11123222
Q ss_pred cCeeEeccCCchhhhhhhcc
Q 005084 175 IRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 175 I~~v~l~PRf~~~V~~~l~~ 194 (715)
...|.+.|=...++...|..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~ 171 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKR 171 (482)
T ss_pred ceEEEecCCCHHHHHHHHHH
Confidence 34566666667777777753
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=30.71 E-value=54 Score=31.87 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=28.5
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHH
Q 005084 20 GLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI 61 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i 61 (715)
.||.=+.|-|||.++..+++.....|..|+.+.+.....+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 456667899999888888874444466677777665544433
No 233
>PF13173 AAA_14: AAA domain
Probab=30.61 E-value=2.2e+02 Score=26.28 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=23.6
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHH
Q 005084 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLK 58 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~ 58 (715)
++.=|+|-|||.++..++.-+.+ ..-++.++..++..
T Consensus 6 ~l~G~R~vGKTtll~~~~~~~~~-~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 6 ILTGPRGVGKTTLLKQLAKDLLP-PENILYINFDDPRD 42 (128)
T ss_pred EEECCCCCCHHHHHHHHHHHhcc-cccceeeccCCHHH
Confidence 44458999999999888873332 33455555555443
No 234
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=29.92 E-value=1.1e+02 Score=31.30 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHh
Q 005084 8 HIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN 56 (715)
Q Consensus 8 ~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~ 56 (715)
.+.+.+-.- |.|+|+||-|-.. -++.|+......+..|+++|..+.
T Consensus 148 ~a~~~~~~a--DlllviGTSl~V~-pa~~l~~~~~~~g~~vi~iN~~~~ 193 (206)
T cd01410 148 GAAAAACRA--DLFLCLGTSLQVT-PAANLPLKAARAGGRLVIVNLQPT 193 (206)
T ss_pred HHHHHHhcC--CEEEEECcCceeh-hHHHHHHHHHhcCCeEEEECCCCC
Confidence 333333334 9999999999988 788888744445778888888764
No 235
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=29.77 E-value=1.9e+02 Score=30.59 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHh
Q 005084 113 TSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 113 ~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L 173 (715)
...-..+|+|||+.++.+-+-++ .+..-+..++..+.-+|..|..+ ..+|..-|..+
T Consensus 107 ~~~~kviiidead~mt~~A~nal-lk~lEep~~~~~~il~~n~~~~i---l~tI~SRc~~i 163 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANAL-LKTLEEPPKNTRFILITNDPSKI---LPTIRSRCQRI 163 (325)
T ss_pred CCCceEEEeCcHHHHhHHHHHHH-HHHhccCCCCeEEEEEcCChhhc---cchhhhcceee
Confidence 35567799999999999555544 34444444555555667778764 34555544433
No 236
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=29.23 E-value=1.3e+02 Score=37.50 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHH---HHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHH
Q 005084 6 HQHI---IAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQI 61 (715)
Q Consensus 6 Q~~I---~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i 61 (715)
|.++ +.+++.++...++--+||-||| ++..+=.+....+..|+|+-+|..+.+|+
T Consensus 250 Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT-~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 250 QESFAKLVGEDFHDGPASFIEAQTGIGKT-YGYLLPLLAQSDQRQIIVSVPTKILQDQI 307 (820)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCCcHH-HHHHHHHHHhcCCCcEEEEeCcHHHHHHH
Confidence 5553 3445666444455569999999 33333333322367788888888888776
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=29.23 E-value=2.1e+02 Score=29.71 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=21.8
Q ss_pred CeEEEe-cCCCCHHHHHHHHHHHhcCCCCEEEEecC
Q 005084 19 GGLVIL-SSGLSLPKLIASVLLLHSPSQGTLLLLSS 53 (715)
Q Consensus 19 d~LvVL-~tGLG~~~Iva~ll~~y~~~~~lVlvl~~ 53 (715)
..|++. |+|.|||.++..+.+.....+.-|..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 455555 78999998887776632223445555544
No 238
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=29.17 E-value=71 Score=36.39 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 382 PKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 382 PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.|+..|..+|.. ...+++||||++..+|..|.+.|..
T Consensus 228 ~k~~~l~~ll~~---------------------~~~~~~lVF~~t~~~~~~l~~~L~~ 264 (460)
T PRK11776 228 ERLPALQRLLLH---------------------HQPESCVVFCNTKKECQEVADALNA 264 (460)
T ss_pred HHHHHHHHHHHh---------------------cCCCceEEEECCHHHHHHHHHHHHh
Confidence 388888887753 2236899999999999999999954
No 239
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=28.58 E-value=3.7e+02 Score=29.53 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCH
Q 005084 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSP 55 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~ 55 (715)
++|=|.|-|||.++++|...+.+.++.|+++++..
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 45568999999999999987776677888887654
No 240
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=28.27 E-value=85 Score=38.57 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=44.5
Q ss_pred hhhcCCCeEEEecCC--chhhhhhhhhhccCCC--CceeEEEEEecchhHHHHHHHHHHHHH
Q 005084 638 LDILKPFVIVVYHPD--MSFVRQIEVYKAENPS--IKLKVYFLFYEDSTEVQKFKAGIRREN 695 (715)
Q Consensus 638 L~el~P~~IImYdpd--~~FIR~iEvY~A~~p~--~~lrVYFm~Y~~SvEEQ~yL~~irrEK 695 (715)
|.=+.-+-+|||||| +|-=+| =|=||=+|| .++-||=|+=.+|.||..|-....||-
T Consensus 662 inLiGAsRlil~D~dWNPa~d~Q-AmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~ 722 (776)
T KOG0390|consen 662 LNLIGASRLILFDPDWNPAVDQQ-AMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEG 722 (776)
T ss_pred eeecccceEEEeCCCCCchhHHH-HHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhh
Confidence 555678899999996 454444 244555676 589999999999999999999988863
No 241
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.60 E-value=6e+02 Score=29.75 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=24.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhc-CCC-CEEEEecCCHh
Q 005084 21 LVILSSGLSLPKLIASVLLLHS-PSQ-GTLLLLSSSPN 56 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~-~~~-~lVlvl~~t~~ 56 (715)
++|=|+|-|||..++.|...|. ..| ..|.++.+...
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 3445899999999999988653 223 35767766553
No 242
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.53 E-value=3.3e+02 Score=33.59 Aligned_cols=96 Identities=10% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC---CCE--EEECchHHHHHh
Q 005084 32 KLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS---GQI--FFVTPRILIVDL 106 (715)
Q Consensus 32 ~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~---ggV--~fvTprIL~~DL 106 (715)
..+-.|+..+...+..+||...+......+...|. ...|+|+++..+|.+++.. ||. +.+++ |+
T Consensus 483 ~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-----kV 551 (732)
T TIGR00603 483 RACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS-----KV 551 (732)
T ss_pred HHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCCCccEEEEe-----cc
Confidence 34444666553345556666555555555555553 3458999999999988764 432 23333 45
Q ss_pred hcCCCCCCCeeEEEEecccccCCCChHHHHHHHHH
Q 005084 107 LTQRLPTSNLAGLIILNTHALTENSTETFICRIIK 141 (715)
Q Consensus 107 Ls~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr 141 (715)
+..=|++-.++.+|..-.| ..+..-||-|+-|
T Consensus 552 gdeGIDlP~a~vvI~~s~~---~gS~~q~iQRlGR 583 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSH---YGSRRQEAQRLGR 583 (732)
T ss_pred cccccCCCCCCEEEEeCCC---CCCHHHHHHHhcc
Confidence 5778899999988876655 2345555555544
No 243
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=27.42 E-value=1.1e+02 Score=34.81 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHH-Hh---cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC
Q 005084 16 EPNGGLVILSSGLSLPKLIASVLL-LH---SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 16 ~~~d~LvVL~tGLG~~~Iva~ll~-~y---~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ 91 (715)
.++-+|+|-|.|-|||.++-.+.. .. .+-..+|+++.-.+.++..+.+.+.. .+.+=|.+-++..|...=
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg----~vv~st~d~~~~~~~~~a-- 241 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKG----EVVASTFDEPAERHVQVA-- 241 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcC----cEEEECCCCCHHHHHHHH--
Confidence 356789999999999966555443 21 12123556666666677666666541 344456666776654311
Q ss_pred CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChH
Q 005084 92 GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE 133 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~e 133 (715)
+.++ .+-..-...| .=+.|++|+.||....+++
T Consensus 242 ---~~~i-e~Ae~~~e~G-----~dVlL~iDsItR~arAqre 274 (416)
T PRK09376 242 ---EMVI-EKAKRLVEHG-----KDVVILLDSITRLARAYNT 274 (416)
T ss_pred ---HHHH-HHHHHHHHcC-----CCEEEEEEChHHHHHHHHh
Confidence 0001 0001111122 2257999999997665544
No 244
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=27.19 E-value=1.5e+02 Score=31.34 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHHHHhcCC--CC--EEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC
Q 005084 16 EPNGGLVILSSGLSLPKLIASVLLLHSPS--QG--TLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 16 ~~~d~LvVL~tGLG~~~Iva~ll~~y~~~--~~--lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ 91 (715)
.++.++++=+.|.|||.++-.+....... +. +|.++.-+..+...|.+.+.. .+..-+.+.++..|..+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~----~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKG----EVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhcc----EEEEecCCCCHHHHHHHHHH
Confidence 34577888899999996665555433221 22 333344433455555444421 12233344466555432211
Q ss_pred CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChH
Q 005084 92 GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE 133 (715)
Q Consensus 92 ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~e 133 (715)
++ .+...-. .-..=+.+++||+||....+.+
T Consensus 91 -----~~-~~a~~~~-----~~G~~vll~iDei~r~a~a~~e 121 (249)
T cd01128 91 -----VL-EKAKRLV-----EHGKDVVILLDSITRLARAYNT 121 (249)
T ss_pred -----HH-HHHHHHH-----HCCCCEEEEEECHHHhhhhhhh
Confidence 11 1122111 1233467999999998775533
No 245
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=27.11 E-value=1e+02 Score=33.53 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 381 APKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 381 ~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.+|+..+..+++.. ..++++||||++.+.|..+.++|..
T Consensus 206 ~~~~~~l~~l~~~~--------------------~~~~~~lVf~~t~~~~~~~~~~L~~ 244 (358)
T TIGR01587 206 VGEISSLERLLEFI--------------------KKGGKIAIIVNTVDRAQEFYQQLKE 244 (358)
T ss_pred ccCHHHHHHHHHHh--------------------hCCCeEEEEECCHHHHHHHHHHHHh
Confidence 46777777776442 2347999999999999999888843
No 246
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=26.77 E-value=62 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 415 NDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 415 ~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.++.+|||+|++...+.+|.+.|..
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4678999999999999999998753
No 247
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=26.76 E-value=4.3e+02 Score=32.07 Aligned_cols=107 Identities=14% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc---CCCEEEECchHHHHHhhcCCCCCCCeeEE
Q 005084 43 PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS---SGQIFFVTPRILIVDLLTQRLPTSNLAGL 119 (715)
Q Consensus 43 ~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~---~ggV~fvTprIL~~DLLs~ri~~~~Itgi 119 (715)
..+..|+|.-.+....+.+.+.|...+ .....++|+.+..+|.+... .|.+.++ +..|+|+.=+++..+..+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G~i~VL----V~t~~L~rGfDiP~v~lV 514 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLGEFDVL----VGINLLREGLDLPEVSLV 514 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcCCceEE----EEcChhcCCeeeCCCcEE
Confidence 446778888888888888888887542 24567788888888875544 5665554 123899999999999999
Q ss_pred EEeccccc-CCCChHHHHHHHHHhc-CcCccEEeecC
Q 005084 120 IILNTHAL-TENSTETFICRIIKSL-NREAYIRAFSD 154 (715)
Q Consensus 120 VV~~AHr~-~~~~~eaFI~rlyr~~-nk~gfIkAfSd 154 (715)
|+.+|+.- ...+...+|=+.=|.. +..|.+.-|.+
T Consensus 515 vi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~ 551 (655)
T TIGR00631 515 AILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYAD 551 (655)
T ss_pred EEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEc
Confidence 99988764 3445666654432221 23455555544
No 248
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=26.74 E-value=8.4e+02 Score=33.72 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCCeEEE--ecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCCh
Q 005084 5 FHQHIIAELLQEPNGGLVI--LSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPA 82 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvV--L~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~ 82 (715)
=|++.+..++..+ +.++| =+-|=|||.++..++.++...|.-|++++||-.-...+.+...... .+-.
T Consensus 433 ~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A---------~Ti~ 502 (1960)
T TIGR02760 433 SNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLA---------STFI 502 (1960)
T ss_pred HHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchh---------hhHH
Confidence 3788888877642 44444 4567799999999999777668889999999988888887654310 0000
Q ss_pred hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccC
Q 005084 83 NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSG 162 (715)
Q Consensus 83 ~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g 162 (715)
.-...+ ..+.-+-|-+-+. ...-|+..-+.+|||||..+.-.-. .-+++.-...+ .-|.-+-|.-.-=..+
T Consensus 503 ~~l~~l--~~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~~~~-~~Ll~~a~~~g--arvVlvGD~~QL~sV~ 573 (1960)
T TIGR02760 503 TWVKNL--FNDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSNNEL-LKLIDKAEQHN--SKLILLNDSAQRQGMS 573 (1960)
T ss_pred HHHHhh--cccccchhHHHhh----cccCCCCCCCEEEEECCCCCCHHHH-HHHHHHHhhcC--CEEEEEcChhhcCccc
Confidence 011111 1121112222121 2333445668899999987643322 22223222222 3344444421110113
Q ss_pred cchHHHHHHHhccCeeEe
Q 005084 163 FAKTERIMKSLFIRKLHL 180 (715)
Q Consensus 163 ~~~l~~vmk~L~I~~v~l 180 (715)
-..+-+.|..=++..+.+
T Consensus 574 aG~~f~~L~~~gv~t~~l 591 (1960)
T TIGR02760 574 AGSAIDLLKEGGVTTYAW 591 (1960)
T ss_pred cchHHHHHHHCCCcEEEe
Confidence 344445666666665543
No 249
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=26.07 E-value=4.7e+02 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=24.4
Q ss_pred CeEEEe-cCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHh
Q 005084 19 GGLVIL-SSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPN 56 (715)
Q Consensus 19 d~LvVL-~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~ 56 (715)
|.|++. |+|+|||.++..+.. +. ..++..|+.+++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 456555 799999987776665 22 224566777776543
No 250
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=26.03 E-value=1.1e+02 Score=30.25 Aligned_cols=44 Identities=9% Similarity=-0.062 Sum_probs=36.0
Q ss_pred hhhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHH
Q 005084 375 EEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCI 437 (715)
Q Consensus 375 ~~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L 437 (715)
-|.|+..|+...+..+++.... ...+|+|.|.|...+.+|-+.|
T Consensus 6 FYhL~~~~~~~~acrL~~Ka~~-------------------~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 6 IYQTSDELLLKSILLLIEKCYY-------------------SDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred EEEeCCChHHHHHHHHHHHHHH-------------------cCCEEEEEcCCHHHHHHHHHHh
Confidence 4678899999999999887542 3469999999998888888766
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=25.49 E-value=3.6e+02 Score=30.23 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=24.8
Q ss_pred CeE-EEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhH
Q 005084 19 GGL-VILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNL 57 (715)
Q Consensus 19 d~L-vVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~ 57 (715)
|.| +.=++|.|||.++..+.. +. ..++..|+.+++....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 454 455799999988776665 22 2335667777765543
No 252
>PRK10689 transcription-repair coupling factor; Provisional
Probab=25.11 E-value=2.4e+02 Score=36.56 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCC-CCCCCeeecCCCChhhHHHhhc---C--CCEEEECchHHHHHhhcCCCCCCCeeE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPN-APLLPSEITADLPANHRHTLYS---S--GQIFFVTPRILIVDLLTQRLPTSNLAG 118 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~~itge~~~~~R~~lY~---~--ggV~fvTprIL~~DLLs~ri~~~~Itg 118 (715)
++.|+++-.+....+.+.+.|... +...+.++.|.++.++|.+... + -.|+++| |++..=||+.+|+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT------dIierGIDIP~v~~ 882 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT------TIIETGIDIPTANT 882 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC------chhhcccccccCCE
Confidence 445555544554445555555432 1235678899999999987643 3 4466655 67788899999999
Q ss_pred EEEecccccCCCChH-HHHHHHHHhcCcCccEEeecCCCccc
Q 005084 119 LIILNTHALTENSTE-TFICRIIKSLNREAYIRAFSDKPTAM 159 (715)
Q Consensus 119 iVV~~AHr~~~~~~e-aFI~rlyr~~nk~gfIkAfSdsP~sf 159 (715)
||+++|++..- .++ -.+-|.=| .++.|++.-++..|..+
T Consensus 883 VIi~~ad~fgl-aq~~Qr~GRvGR-~g~~g~a~ll~~~~~~~ 922 (1147)
T PRK10689 883 IIIERADHFGL-AQLHQLRGRVGR-SHHQAYAWLLTPHPKAM 922 (1147)
T ss_pred EEEecCCCCCH-HHHHHHhhccCC-CCCceEEEEEeCCCccc
Confidence 99999976321 111 11111111 24567777777776543
No 253
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.80 E-value=2.2e+02 Score=33.42 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=38.1
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhc-CcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSL-NREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~-nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-.-+||||||+++.....+ +++..-+. ...-||.+-++ |... ..+|..-|. .+++.|--..++..++.
T Consensus 119 ~~kV~iIDE~~~ls~~a~na-LLk~LEepp~~~~fIlattd-~~kl---~~tI~SRc~-----~~~f~~l~~~~i~~~l~ 188 (509)
T PRK14958 119 RFKVYLIDEVHMLSGHSFNA-LLKTLEEPPSHVKFILATTD-HHKL---PVTVLSRCL-----QFHLAQLPPLQIAAHCQ 188 (509)
T ss_pred CcEEEEEEChHhcCHHHHHH-HHHHHhccCCCeEEEEEECC-hHhc---hHHHHHHhh-----hhhcCCCCHHHHHHHHH
Confidence 34568999999999865544 34544433 23457776543 4432 123333333 33455545566666654
No 254
>PRK06526 transposase; Provisional
Probab=24.50 E-value=3.3e+02 Score=28.84 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecC
Q 005084 17 PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSS 53 (715)
Q Consensus 17 ~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~ 53 (715)
+.|-+++=|+|-|||.++..+....+..|..|++..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 3365666689999999998887743333555554433
No 255
>cd08808 CARD_CARD11_CARMA1 Caspase activation and recruitment domain of CARD11-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD11, also known as caspase recruitment domain-containing membrane-associated guanylate kinase protein 1 (CARMA1). CARMA1, together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), form the L-CBM signalosome (CBM complex in lymphoid immune cells) which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARMA1 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by as
Probab=24.14 E-value=77 Score=28.31 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccch
Q 005084 272 VSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAE 314 (715)
Q Consensus 272 v~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~~ 314 (715)
.....+--+||..|.+.|+-+|..||+++.-. -||++..
T Consensus 46 ~~~~~k~g~LLDIL~trG~~af~aFLeSLe~~----yP~l~~~ 84 (86)
T cd08808 46 PSKINRAGRLLDILHTKGQRGYVVFLESLEFY----YPELYKL 84 (86)
T ss_pred chHHHHHHHHHHHHHhcCchHHHHHHHHHHhh----CHHHHHh
Confidence 33445566899999999999999999999643 4677653
No 256
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=24.05 E-value=96 Score=29.71 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=26.7
Q ss_pred hhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHH
Q 005084 376 EVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCI 437 (715)
Q Consensus 376 ~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L 437 (715)
++|...+.+..+..+++..-. ...+|+|.|.|...+.+|-+.|
T Consensus 7 y~l~~~~~~~~~c~L~~k~~~-------------------~g~rv~V~~~d~~~a~~lD~~L 49 (137)
T PF04364_consen 7 YHLSSDDLERFACRLAEKAYR-------------------QGQRVLVLCPDEEQAEALDELL 49 (137)
T ss_dssp EE-S----HHHHHHHHHHHHH-------------------TT--EEEE-SSHHHHHHHHHHT
T ss_pred EEcCCCcHHHHHHHHHHHHHH-------------------cCCeEEEEeCCHHHHHHHHHHH
Confidence 455666667888888776542 2368999999999999888866
No 257
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=23.96 E-value=1.9e+02 Score=31.95 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh--cCCCCEEEEec
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH--SPSQGTLLLLS 52 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y--~~~~~lVlvl~ 52 (715)
-+.|.+.+..|+..+.|-|++=+||=|||..+..|+... .+++..++.+-
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 356777888888877788888899999999998888732 24444555443
No 258
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.71 E-value=4.8e+02 Score=30.12 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=29.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHh---HHHHHHH
Q 005084 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN---LKSQIIH 63 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~---~~~~i~~ 63 (715)
++|=|+|-|||..++.|...+...+..|.++.+.+. ..+|+..
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH
Confidence 677789999999999887755445666777766543 3445544
No 259
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=23.66 E-value=6.3e+02 Score=27.44 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 18 NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
...|+.=+.|.|||.++-.+-.... .. .+-+.+++. ..+..++|......+..- ++.+..
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~--~~-~~~i~~t~~--------------l~p~d~~G~~~~~~~~~~---~~~~~~ 103 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALG--LP-FVRIQCTPD--------------LLPSDLLGTYAYAALLLE---PGEFRF 103 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhC--CC-eEEEecCCC--------------CCHHHhcCchhHhhhhcc---CCeEEE
Confidence 3889999999999977776665432 11 222222221 134455555433322111 444444
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHh-----------cCcCccEEeecCCCcccccCcchH
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKS-----------LNREAYIRAFSDKPTAMVSGFAKT 166 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~-----------~nk~gfIkAfSdsP~sf~~g~~~l 166 (715)
++.-+....- +.+++||.-|+.+. ..+.++..+-+ .-+.+|+...|.+|+..- |-.++
T Consensus 104 ~~gpl~~~~~---------~ill~DEInra~p~-~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~-g~~~l 172 (329)
T COG0714 104 VPGPLFAAVR---------VILLLDEINRAPPE-VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYE-GTYPL 172 (329)
T ss_pred ecCCcccccc---------eEEEEeccccCCHH-HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccC-CCcCC
Confidence 4433322211 56788999888753 34445554443 134789999999997543 33333
Q ss_pred HHHHHHhc-cCeeEecc
Q 005084 167 ERIMKSLF-IRKLHLWP 182 (715)
Q Consensus 167 ~~vmk~L~-I~~v~l~P 182 (715)
.+...+-+ +....=||
T Consensus 173 ~eA~ldRf~~~~~v~yp 189 (329)
T COG0714 173 PEALLDRFLLRIYVDYP 189 (329)
T ss_pred CHHHHhhEEEEEecCCC
Confidence 33333333 44444444
No 260
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=23.55 E-value=1.1e+02 Score=37.89 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 381 APKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 381 ~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.-||.+|.+.+.+.. ....+|||+|++...+..|.++|..
T Consensus 423 ~~K~~al~~~i~~~~-------------------~~g~pvLI~t~si~~se~ls~~L~~ 462 (796)
T PRK12906 423 DSKFNAVVKEIKERH-------------------AKGQPVLVGTVAIESSERLSHLLDE 462 (796)
T ss_pred HHHHHHHHHHHHHHH-------------------hCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 348887777665532 2346999999999999999999964
No 261
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.45 E-value=2.4e+02 Score=32.93 Aligned_cols=85 Identities=11% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCEEEEecCCHhHHHHHHHHhCCC-CCCCCeeecCCCChhhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCee
Q 005084 44 SQGTLLLLSSSPNLKSQIIHYLAPN-APLLPSEITADLPANHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLA 117 (715)
Q Consensus 44 ~~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~~itge~~~~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~It 117 (715)
..++||+ +|-..++++...+... ....+..|.|.++.+.|.+.+. +.||+|+| |..+.=|++.+|.
T Consensus 256 kK~iVFF--~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T------DVaARGlDip~iD 327 (567)
T KOG0345|consen 256 KKCIVFF--PTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT------DVAARGLDIPGID 327 (567)
T ss_pred ccEEEEe--cCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee------hhhhccCCCCCce
Confidence 3445554 4444555555544332 3346778999999999988775 68999988 8999999999999
Q ss_pred EEEEecccccCCCChHHHHHHHH
Q 005084 118 GLIILNTHALTENSTETFICRII 140 (715)
Q Consensus 118 giVV~~AHr~~~~~~eaFI~rly 140 (715)
.+|=..- +.....|+-|-=
T Consensus 328 ~VvQ~Dp----P~~~~~FvHR~G 346 (567)
T KOG0345|consen 328 LVVQFDP----PKDPSSFVHRCG 346 (567)
T ss_pred EEEecCC----CCChhHHHhhcc
Confidence 8884432 445566766543
No 262
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.37 E-value=3e+02 Score=32.36 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=38.0
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..+||||||+++.....++ ++..-+.. ..-||++-+ +|..+. ..|..-|..+.+ .|--..++.++|.
T Consensus 119 ~~kVvIIDEad~ls~~a~naL-LK~LEepp~~~~fIL~t~-d~~kil---~tI~SRc~~~~f-----~~l~~~~i~~~L~ 188 (527)
T PRK14969 119 RFKVYIIDEVHMLSKSAFNAM-LKTLEEPPEHVKFILATT-DPQKIP---VTVLSRCLQFNL-----KQMPPPLIVSHLQ 188 (527)
T ss_pred CceEEEEcCcccCCHHHHHHH-HHHHhCCCCCEEEEEEeC-ChhhCc---hhHHHHHHHHhc-----CCCCHHHHHHHHH
Confidence 346799999999987554443 44444332 235776654 455432 234444544443 3333455666663
No 263
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=23.37 E-value=5.2e+02 Score=26.98 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=14.5
Q ss_pred CeEEEecCCCCHHHHHHHHHH
Q 005084 19 GGLVILSSGLSLPKLIASVLL 39 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~ 39 (715)
+-|+.=|.|-|||.++-.+-.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 346778999999955544433
No 264
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=23.34 E-value=1.2e+02 Score=30.76 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHh
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN 56 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~ 56 (715)
..+.++.+... |.++|+||+|-.. -++.++......+..++++|..+.
T Consensus 160 ~~~~~~~~~~~--d~llviGtSl~v~-~~~~l~~~~~~~~~~~~~in~~~~ 207 (222)
T cd00296 160 FDRALEALLEA--DLVLVIGTSLTVY-PAARLLLRAPERGAPVVIINREPT 207 (222)
T ss_pred HHHHHHHHhcC--CEEEEECCCcccc-CHHHHHHHHHHCCCcEEEECCCCC
Confidence 34556666666 9999999999977 666777643344677888887765
No 265
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=23.28 E-value=5.6e+02 Score=30.97 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=28.5
Q ss_pred CeEEEec-CCCCHHHHHHHHHHHhc--CCCCEEEEecCCHhHHHH
Q 005084 19 GGLVILS-SGLSLPKLIASVLLLHS--PSQGTLLLLSSSPNLKSQ 60 (715)
Q Consensus 19 d~LvVL~-tGLG~~~Iva~ll~~y~--~~~~lVlvl~~t~~~~~~ 60 (715)
|.|++.| .|+|||.++..+.+... .++..|+.+++.....+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 5677766 79999988887777321 246678888776654433
No 266
>PF10627 CsgE: Curli assembly protein CsgE; InterPro: IPR018900 Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis []. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF [].
Probab=23.15 E-value=5e+02 Score=24.08 Aligned_cols=89 Identities=10% Similarity=0.155 Sum_probs=62.9
Q ss_pred eeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhcc
Q 005084 116 LAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 116 ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~ 194 (715)
|.|||+|+...-.|.-=|-+....|++.. ..+|..-+...|.+ +.. +.|.+.
T Consensus 2 i~GliiDrT~Tr~G~DFY~~Fs~~~~~~~~~~~~~itI~E~ps~---r~G-----------S~I~V~------------- 54 (107)
T PF10627_consen 2 IDGLIIDRTITRFGHDFYRYFSQKWRDIPITSGFNITIKERPSA---RWG-----------SLITVE------------- 54 (107)
T ss_pred CCcEEecCccccchHHHHHHHHHHHhhcCCCCCceEEEEEEECC---CCC-----------CEEEEE-------------
Confidence 78999999998888777777788888887 67999999999986 221 122221
Q ss_pred CCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcC
Q 005084 195 EPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTN 232 (715)
Q Consensus 195 ~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n 232 (715)
+..+++. .--++|....+...-..++......|.+..
T Consensus 55 ~~~~~iy-~t~l~P~~~~~~~~a~~Av~~v~~~l~~~~ 91 (107)
T PF10627_consen 55 VNNKVIY-QTFLSPRRRDLKEMAEQAVQQVNQYLARRQ 91 (107)
T ss_pred ECCEEEE-EEeeCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234443 456778877777777777777766666653
No 267
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.15 E-value=3.2e+02 Score=33.00 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=38.0
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcC-ccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNRE-AYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~-gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
....|||||||+++....+++ ++.+-+.... .||. .|..|..+. ..|..-| ..+.+.|=...++...|.
T Consensus 119 ~~kVIIIDEad~Lt~~a~naL-Lk~LEEP~~~~ifIL-aTt~~~kll---~TI~SRc-----q~i~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNAL-LKTLEEPPARVTFVL-ATTEPHKFP---VTIVSRC-----QHFTFTRLSEAGLEAHLT 188 (624)
T ss_pred CceEEEEEChHhCCHHHHHHH-HHHhhccCCCEEEEE-ecCChhhhh---HHHHhhh-----hccccCCCCHHHHHHHHH
Confidence 346789999999987665554 4444333333 3444 455665431 1222222 244555555666666664
No 268
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=22.98 E-value=3.1e+02 Score=34.75 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCCCeEEEec-CCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCC------------
Q 005084 5 FHQHIIAELLQEPNGGLVILS-SGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAP------------ 70 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL~-tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~------------ 70 (715)
=|++.+..+|... |=.+|+| .|=|||..++.+++ ++. .|+.||+...|...+.-|.-.|+....
T Consensus 673 dQr~A~~k~L~ae-dy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih 750 (1100)
T KOG1805|consen 673 DQRQALLKALAAE-DYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIH 750 (1100)
T ss_pred HHHHHHHHHHhcc-chheeecCCCCCchhhHHHHHHHHHH-cCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccc
Confidence 3677666665543 6666665 79999999999999 553 489999999999888766544432211
Q ss_pred CCCeee--cCCC---ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccC
Q 005084 71 LLPSEI--TADL---PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALT 128 (715)
Q Consensus 71 ~~~~~i--tge~---~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~ 128 (715)
+.+..+ +.++ +.+.=++.|.+--|+.+|.-=+--=|.++| .+.-+|||||-.+.
T Consensus 751 ~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R----~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 751 PDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNR----QFDYCIIDEASQIL 809 (1100)
T ss_pred hHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhcc----ccCEEEEccccccc
Confidence 111222 2222 345666788888877777543332222333 36677888886553
No 269
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=22.81 E-value=1.2e+02 Score=37.82 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=32.3
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 379 EEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 379 Ee~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
-+.-||..+.+.+.+.. ....+|||+|++...+..|.++|..
T Consensus 411 t~~~K~~aI~~~I~~~~-------------------~~grpVLIft~Si~~se~Ls~~L~~ 452 (830)
T PRK12904 411 TEKEKFDAVVEDIKERH-------------------KKGQPVLVGTVSIEKSELLSKLLKK 452 (830)
T ss_pred CHHHHHHHHHHHHHHHH-------------------hcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 34458998887776542 2236899999999999999999964
No 270
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=22.64 E-value=1.3e+02 Score=29.08 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=32.5
Q ss_pred hhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHH
Q 005084 376 EVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCI 437 (715)
Q Consensus 376 ~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L 437 (715)
+.|...+++..+..+++..- ..+.+|+|.|.|...+.+|-++|
T Consensus 7 Y~l~~~~~~~~~c~L~~ka~-------------------~~g~rv~I~~~d~~~a~~lD~~L 49 (142)
T PRK05728 7 YHLTLSALEALLCELAEKAL-------------------RAGWRVLVQCEDEEQAEALDEAL 49 (142)
T ss_pred EecCchhHHHHHHHHHHHHH-------------------HCCCEEEEEcCCHHHHHHHHHHh
Confidence 45566778888888886643 23469999999998888887755
No 271
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=22.49 E-value=1.1e+02 Score=35.08 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.5
Q ss_pred CCCeEEEEeCChhhHHHHHHHHH
Q 005084 416 DHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 416 ~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
...++||||+++++|..|.++|.
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~ 356 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLV 356 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHH
Confidence 34689999999999999988773
No 272
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=22.46 E-value=87 Score=38.10 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=30.3
Q ss_pred cCCCEEEECchHHHHHhhc--C-CCCCCCeeEEEEecccccCCCChH
Q 005084 90 SSGQIFFVTPRILIVDLLT--Q-RLPTSNLAGLIILNTHALTENSTE 133 (715)
Q Consensus 90 ~~ggV~fvTprIL~~DLLs--~-ri~~~~ItgiVV~~AHr~~~~~~e 133 (715)
.+.-|+++-=..|..|+.. + .+|.-....+||||||++-+.-..
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d~A~~ 264 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPDVARD 264 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHHHHHH
Confidence 4455666666678889953 3 455446788999999998764443
No 273
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=22.34 E-value=1.8e+02 Score=29.81 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=34.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEecCCHhHHHHHHHHh
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHS--PSQGTLLLLSSSPNLKSQIIHYL 65 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~--~~~~lVlvl~~t~~~~~~i~~~L 65 (715)
+.+|.+|.|.|++.+.+.+-.+.. +.+.++|+.++..++...+.+.|
T Consensus 114 ~~llliagGtGiaP~~~~l~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l 162 (247)
T cd06184 114 RPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARNSAVHAFRDEL 162 (247)
T ss_pred CcEEEEeccccHhHHHHHHHHHHhcCCCCcEEEEEEcCchhhHHHHHHH
Confidence 579999999999988777766433 45678888888777655555444
No 274
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=22.30 E-value=1.4e+03 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=20.1
Q ss_pred CCeeEEEEecccccCCCChHHHHHHHHHh
Q 005084 114 SNLAGLIILNTHALTENSTETFICRIIKS 142 (715)
Q Consensus 114 ~~ItgiVV~~AHr~~~~~~eaFI~rlyr~ 142 (715)
..+..||+||+|.+...- ...+.++|+-
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 345679999999998764 3445677763
No 275
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=22.21 E-value=8.4e+02 Score=29.53 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCCCEEEECchHHHHHhhcCCCCCCCeeEEE
Q 005084 44 SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSGQIFFVTPRILIVDLLTQRLPTSNLAGLI 120 (715)
Q Consensus 44 ~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~ggV~fvTprIL~~DLLs~ri~~~~ItgiV 120 (715)
.+..|+|.-.+....+.+.+.|...+ .....++|+.+..+|... +..|++.++ +..|+|+.=++...+..+|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g~i~vl----V~t~~L~rGfdlp~v~lVi 519 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGEFDVL----VGINLLREGLDIPEVSLVA 519 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcCCceEE----EEeCHHhCCccccCCcEEE
Confidence 46677777788888888888887642 245677788888887753 445765543 1237889999999999999
Q ss_pred Eeccccc-CCCChHHHHHHHHHh-cCcCccEEeecCC
Q 005084 121 ILNTHAL-TENSTETFICRIIKS-LNREAYIRAFSDK 155 (715)
Q Consensus 121 V~~AHr~-~~~~~eaFI~rlyr~-~nk~gfIkAfSds 155 (715)
+.+++.- ...+...||-|.=|. +++.|-+.-|.+.
T Consensus 520 i~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 520 ILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred EeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9998643 223555665554332 1345555555553
No 276
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=22.15 E-value=1.2e+02 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccch
Q 005084 276 KTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAE 314 (715)
Q Consensus 276 ~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~~ 314 (715)
++--+||+.|.+.|.-+|..||+++.-. -||+++.
T Consensus 50 ~k~g~LLDIL~trG~~g~~aFLeSLe~~----yP~ly~~ 84 (86)
T cd08806 50 MRVGHLLDLLKTRGKNGAIAFLESLKFH----NPDVYTL 84 (86)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHH----CHHHHHh
Confidence 4445799999999999999999999753 4677653
No 277
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=22.10 E-value=63 Score=34.79 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred hhcCCCEEEECchHHHHHhhcCC--CCCCCeeEEEEecccccCCCChHH
Q 005084 88 LYSSGQIFFVTPRILIVDLLTQR--LPTSNLAGLIILNTHALTENSTET 134 (715)
Q Consensus 88 lY~~ggV~fvTprIL~~DLLs~r--i~~~~ItgiVV~~AHr~~~~~~ea 134 (715)
.....-|++++=.-|..|...+. +++ .-+.+||||||++-+...+.
T Consensus 208 ~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d~a~~~ 255 (289)
T smart00489 208 AIEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDNVCISA 255 (289)
T ss_pred HhhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHHHHHHH
Confidence 34666777777777777775433 233 36889999999987654443
No 278
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=22.10 E-value=63 Score=34.79 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred hhcCCCEEEECchHHHHHhhcCC--CCCCCeeEEEEecccccCCCChHH
Q 005084 88 LYSSGQIFFVTPRILIVDLLTQR--LPTSNLAGLIILNTHALTENSTET 134 (715)
Q Consensus 88 lY~~ggV~fvTprIL~~DLLs~r--i~~~~ItgiVV~~AHr~~~~~~ea 134 (715)
.....-|++++=.-|..|...+. +++ .-+.+||||||++-+...+.
T Consensus 208 ~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d~a~~~ 255 (289)
T smart00488 208 AIEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDNVCISA 255 (289)
T ss_pred HhhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHHHHHHH
Confidence 34666777777777777775433 233 36889999999987654443
No 279
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=21.86 E-value=2.4e+02 Score=27.97 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLL 50 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlv 50 (715)
+.+...+..++..+.+.+++=|+|-|||.++..++.+..+..+.|.+
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 45667777777776677777789999998888887766554555554
No 280
>PRK06893 DNA replication initiation factor; Validated
Probab=21.74 E-value=2.9e+02 Score=28.40 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=15.1
Q ss_pred EEEecCCCCHHHHHHHHHHH
Q 005084 21 LVILSSGLSLPKLIASVLLL 40 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~ 40 (715)
++.=|.|.|||.++..+.+.
T Consensus 43 ~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45567899999888777763
No 281
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=21.70 E-value=7.3e+02 Score=28.95 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=53.2
Q ss_pred EEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCCC--EEEECchHHHHHhhcCCCCCCCeeEEEEec
Q 005084 49 LLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSGQ--IFFVTPRILIVDLLTQRLPTSNLAGLIILN 123 (715)
Q Consensus 49 lvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~gg--V~fvTprIL~~DLLs~ri~~~~ItgiVV~~ 123 (715)
||.-.+....+.+...|..........++|+.+.++|... |.+|. |+++| |.++.=|++.+|+.+|..+
T Consensus 371 iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT------dvl~rGiDip~v~~VI~~d 444 (518)
T PLN00206 371 VVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT------GVLGRGVDLLRVRQVIIFD 444 (518)
T ss_pred EEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe------cHhhccCCcccCCEEEEeC
Confidence 3333444445556555542112346778999999888754 45554 56666 6889899999999999776
Q ss_pred ccccCCCChHHHHHHH
Q 005084 124 THALTENSTETFICRI 139 (715)
Q Consensus 124 AHr~~~~~~eaFI~rl 139 (715)
. +.+.+.||=|.
T Consensus 445 ~----P~s~~~yihRi 456 (518)
T PLN00206 445 M----PNTIKEYIHQI 456 (518)
T ss_pred C----CCCHHHHHHhc
Confidence 5 55666776554
No 282
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=21.66 E-value=1.1e+03 Score=26.00 Aligned_cols=81 Identities=9% Similarity=0.116 Sum_probs=51.5
Q ss_pred HhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCC
Q 005084 105 DLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRF 184 (715)
Q Consensus 105 DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf 184 (715)
+.++..-....-.-+||++||+++...+-++ ++..-+-.++.++.=.|.+|..+ +.++.. +...+.+-|-.
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaL-LKtLEEPp~~t~fiL~t~~~~~l------LpTI~S--RCq~~~~~~~~ 168 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMNESASNAL-LKTLEEPAPNCLFLLVTHNQKRL------LPTIVS--RCQQWVVTPPS 168 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhCHHHHHHH-HHHhcCCCCCeEEEEEECChhhC------hHHHHh--cceeEeCCCCC
Confidence 3333333334456789999999998777766 66666666666666678888864 333332 23455666666
Q ss_pred chhhhhhhcc
Q 005084 185 QVNVSEELER 194 (715)
Q Consensus 185 ~~~V~~~l~~ 194 (715)
...+...|..
T Consensus 169 ~~~~~~~L~~ 178 (319)
T PRK06090 169 TAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHH
Confidence 7777778754
No 283
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=21.56 E-value=89 Score=27.88 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccc
Q 005084 271 LVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFA 313 (715)
Q Consensus 271 Lv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~ 313 (715)
++....+--+||+.|.+.|.-+|-.||++|... -||++.
T Consensus 45 ~~~~~~kvg~LLDIL~~rG~~~f~aFLeSLE~~----yP~l~~ 83 (86)
T cd08809 45 LVIRKRKVGVLLDILQRTGLKGYEAFLESLELY----YPQLYK 83 (86)
T ss_pred cchHHHHHHHHHHHHHhcCchHHHHHHHHHHHH----HHHHHh
Confidence 344456667899999999999999999999653 367654
No 284
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=21.37 E-value=1.3e+02 Score=38.03 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=31.5
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 380 EAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 380 e~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
..-||.+|.+.+.+.. ....+|||+|++-..+..|.++|..
T Consensus 580 ~~eK~~Ali~~I~~~~-------------------~~grpVLIft~Sve~sE~Ls~~L~~ 620 (1025)
T PRK12900 580 RREKYNAIVLKVEELQ-------------------KKGQPVLVGTASVEVSETLSRMLRA 620 (1025)
T ss_pred HHHHHHHHHHHHHHHh-------------------hCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 3448888777766642 2346999999999999999999954
No 285
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.35 E-value=8.3e+02 Score=29.30 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=40.7
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..+||||||+++..-..++ ++.+-+-. ..-||.+- ..|..+ +..+.+. ...+.+.|--..++..+|.
T Consensus 118 ~~KVvIIDEah~Lt~~A~NAL-LK~LEEpp~~~~fIL~t-te~~kl------l~TI~SR--c~~~~F~~l~~~~i~~~L~ 187 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNAL-LKIVEEPPEHLIFIFAT-TEPEKV------LPTIRSR--THHYPFRLLPPRTMRALIA 187 (584)
T ss_pred CceEEEEECCCcCCHHHHHHH-HHHHhcCCCCeEEEEEe-CChHhh------HHHHHHh--ceEEEeeCCCHHHHHHHHH
Confidence 456789999999987644443 44443322 23455544 344321 2233332 4567777777788888885
Q ss_pred c
Q 005084 194 R 194 (715)
Q Consensus 194 ~ 194 (715)
.
T Consensus 188 ~ 188 (584)
T PRK14952 188 R 188 (584)
T ss_pred H
Confidence 3
No 286
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=21.28 E-value=2.3e+02 Score=31.13 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh--cCCCCEEEEecCCH
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH--SPSQGTLLLLSSSP 55 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y--~~~~~lVlvl~~t~ 55 (715)
+.|.+.+..++..+.+.|++=++|-|||.++..|+..+ .++...++++-.+.
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 45667788877776788999999999998888888742 34455566555444
No 287
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=21.09 E-value=1.6e+02 Score=33.98 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHHHH-hcC-------C-CCEEEEecCCHhHHHH----HHHHhCCCCCC---CCeeecCCC
Q 005084 17 PNGGLVILSSGLSLPKLIASVLLL-HSP-------S-QGTLLLLSSSPNLKSQ----IIHYLAPNAPL---LPSEITADL 80 (715)
Q Consensus 17 ~~d~LvVL~tGLG~~~Iva~ll~~-y~~-------~-~~lVlvl~~t~~~~~~----i~~~L~~~~~~---~~~~itge~ 80 (715)
+.|+.|-++..=. +.+.||.... |.. | ..-.+++-++..++++ |+++-.-...+ ....|+|..
T Consensus 250 PgngFva~s~Ap~-e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~ 328 (725)
T KOG0349|consen 250 PGNGFVAVSDAPN-EHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVL 328 (725)
T ss_pred CCCceEEeecCCc-cccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHH
Confidence 3466665554332 3355665542 321 1 1234555666655543 33332211111 234566655
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHh
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKS 142 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~ 142 (715)
.-.+-..+-.---|++-||+=|.-=+-+|.+.+..+.-+|.|||.-..+.-..-||-|++.+
T Consensus 329 ~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~q 390 (725)
T KOG0349|consen 329 KRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQ 390 (725)
T ss_pred hHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhcc
Confidence 44444455545567778999998888889999999999999999999997777788776654
No 288
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.87 E-value=5.3e+02 Score=31.55 Aligned_cols=112 Identities=11% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCeEEEe-cCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHh-------HHHHHHHHhCCC-CCCCC
Q 005084 5 FHQHIIAELLQEPNGGLVIL-SSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPN-------LKSQIIHYLAPN-APLLP 73 (715)
Q Consensus 5 YQ~~I~~~~l~~~~d~LvVL-~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~-------~~~~i~~~L~~~-~~~~~ 73 (715)
|--+++..+-.. -.|+|. .||-|||.-+-.+|+ -|+..|.+ +++|.| +..++.+++... +..-=
T Consensus 269 ykdell~av~e~--QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~---IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 269 YKDELLKAVKEH--QVLIIVGETGSGKTTQIPQYLYEAGYTKGGKK---IGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred hHHHHHHHHHhC--cEEEEEcCCCCCccccccHHHHhcccccCCce---EeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 444555554444 556655 499999999999998 56665555 344443 224455555431 10000
Q ss_pred eeecCC-CChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 74 SEITAD-LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 74 ~~itge-~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
-.|--+ +++++- -+=..|--.|.-.+|+. -++..-+.|||||||-=+=
T Consensus 344 YsIRFEdcTSekT-------vlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL 392 (902)
T KOG0923|consen 344 YSIRFEDCTSEKT-------VLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTL 392 (902)
T ss_pred eEEEeccccCcce-------eeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhh
Confidence 112222 222221 23346666788887765 4677889999999995443
No 289
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=20.69 E-value=1.4e+02 Score=36.77 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.8
Q ss_pred CCeEEEEeCChhhHHHHHHHHHh
Q 005084 417 HGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 417 ~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
..+|||+|++-..+..|.++|..
T Consensus 405 grpvLV~t~si~~se~ls~~L~~ 427 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKE 427 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH
Confidence 46899999999999999999965
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=20.41 E-value=1e+03 Score=25.22 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHHhcCCC--CeEEEecCCCCHHHHHHHHHH-HhcCC-CCEEEEecCCH
Q 005084 10 IAELLQEPN--GGLVILSSGLSLPKLIASVLL-LHSPS-QGTLLLLSSSP 55 (715)
Q Consensus 10 ~~~~l~~~~--d~LvVL~tGLG~~~Iva~ll~-~y~~~-~~lVlvl~~t~ 55 (715)
+..++..+. .-|+.=|+|-|||.++-.+.. +++.. +.-++.+|+..
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 444555432 346666999999977767766 44332 23355666654
No 291
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.27 E-value=3.1e+02 Score=33.56 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=36.1
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..+||||+|++......+ +++..-+.. ..-||.+-++ |... ..+|..-|- .+.|.|--..++..+|.
T Consensus 119 k~KVIIIDEad~Ls~~A~NA-LLKtLEEPp~~v~fILaTtd-~~kL---~~TIrSRC~-----~f~f~~Ls~eeI~~~L~ 188 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNA-MLKTLEEPPEHVKFILATTD-PHKV---PVTVLSRCL-----QFVLRNMTAQQVADHLA 188 (709)
T ss_pred CcEEEEEECccccCHHHHHH-HHHHHHhCCCCcEEEEEeCC-cccc---chHHHHHHh-----hhhcCCCCHHHHHHHHH
Confidence 34679999999987643332 455554433 3357776554 4432 233333332 23333444455566664
No 292
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=20.07 E-value=2.6e+02 Score=33.41 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHHH-hc-CCCCEEEEecCCHhHHHHHHH
Q 005084 4 EFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLLL-HS-PSQGTLLLLSSSPNLKSQIIH 63 (715)
Q Consensus 4 ~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~~-y~-~~~~lVlvl~~t~~~~~~i~~ 63 (715)
+.|..++.. ++.++...++=.|||-||| +.+.+-.+ |. ..+..|++...|..+.+|+.+
T Consensus 18 ~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKT-l~yL~~al~~~~~~~~~viist~t~~lq~q~~~ 81 (654)
T COG1199 18 PEQREMAEAVAEALKGGEGLLIEAPTGTGKT-LAYLLPALAYAREEGKKVIISTRTKALQEQLLE 81 (654)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECCCCccHH-HHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHH
Confidence 457766644 6766544677799999999 44433332 22 235677778788877766543
Done!