Query 005084
Match_columns 715
No_of_seqs 182 out of 353
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wp9_A ATP-dependent RNA helic 99.9 7E-25 2.4E-29 238.5 38.8 368 2-438 10-382 (494)
2 4a2p_A RIG-I, retinoic acid in 99.8 1.3E-17 4.3E-22 187.2 34.0 372 2-439 8-412 (556)
3 3tbk_A RIG-I helicase domain; 99.8 2.6E-17 8.8E-22 184.1 32.3 215 2-219 5-242 (555)
4 4a2q_A RIG-I, retinoic acid in 99.8 7.4E-17 2.5E-21 191.4 34.9 372 2-439 249-653 (797)
5 4a2w_A RIG-I, retinoic acid in 99.8 1.2E-16 4.2E-21 192.9 32.8 372 2-439 249-653 (936)
6 2ykg_A Probable ATP-dependent 99.8 5E-16 1.7E-20 180.4 32.9 201 2-205 14-235 (696)
7 4gl2_A Interferon-induced heli 99.7 4.7E-16 1.6E-20 180.7 22.9 218 2-220 8-260 (699)
8 1qde_A EIF4A, translation init 99.4 1.7E-11 5.9E-16 122.1 18.4 172 2-180 37-214 (224)
9 1t6n_A Probable ATP-dependent 99.4 1E-11 3.5E-16 123.5 16.4 156 2-158 37-202 (220)
10 2oxc_A Probable ATP-dependent 99.3 3.2E-11 1.1E-15 121.4 17.0 166 2-174 47-220 (230)
11 1vec_A ATP-dependent RNA helic 99.3 7.1E-11 2.4E-15 115.9 18.9 166 2-174 26-199 (206)
12 2gxq_A Heat resistant RNA depe 99.3 6.8E-11 2.3E-15 115.9 18.5 165 2-173 24-196 (207)
13 1z63_A Helicase of the SNF2/RA 99.3 1.4E-10 4.8E-15 129.5 23.0 147 2-158 38-189 (500)
14 1hv8_A Putative ATP-dependent 99.3 1.5E-10 5.2E-15 122.0 21.7 157 2-158 29-190 (367)
15 3iuy_A Probable ATP-dependent 99.3 6.4E-11 2.2E-15 118.6 16.7 167 2-176 43-222 (228)
16 3mwy_W Chromo domain-containin 99.3 9.2E-11 3.1E-15 139.5 20.9 207 2-218 237-491 (800)
17 2pl3_A Probable ATP-dependent 99.3 6.2E-11 2.1E-15 119.3 16.4 164 2-172 48-222 (236)
18 3fe2_A Probable ATP-dependent 99.2 1.1E-10 3.8E-15 118.4 16.1 166 2-174 52-229 (242)
19 1xti_A Probable ATP-dependent 99.2 2.6E-10 8.8E-15 122.0 19.6 169 2-177 31-209 (391)
20 1q0u_A Bstdead; DEAD protein, 99.2 4.5E-11 1.5E-15 119.1 12.5 167 2-175 27-204 (219)
21 3b6e_A Interferon-induced heli 99.2 1.1E-11 3.6E-16 121.9 7.8 153 2-155 34-216 (216)
22 2z0m_A 337AA long hypothetical 99.2 1.2E-10 4.1E-15 121.6 15.8 153 2-158 17-172 (337)
23 3bor_A Human initiation factor 99.2 1.2E-10 4.1E-15 117.8 15.3 166 2-174 53-226 (237)
24 1fuu_A Yeast initiation factor 99.2 1.4E-10 4.7E-15 124.0 15.4 156 2-158 44-205 (394)
25 3ber_A Probable ATP-dependent 99.2 3.6E-10 1.2E-14 115.6 16.7 166 2-174 66-239 (249)
26 1wrb_A DJVLGB; RNA helicase, D 99.1 1.1E-09 3.8E-14 111.4 18.4 172 2-180 46-237 (253)
27 2oca_A DAR protein, ATP-depend 99.1 2.9E-10 9.8E-15 127.3 14.5 194 2-211 114-311 (510)
28 3pey_A ATP-dependent RNA helic 99.1 5.5E-10 1.9E-14 118.9 14.7 154 2-158 28-189 (395)
29 1rif_A DAR protein, DNA helica 99.1 1.6E-10 5.6E-15 119.9 10.0 147 2-158 114-264 (282)
30 2j0s_A ATP-dependent RNA helic 99.1 1.6E-09 5.6E-14 117.0 17.7 156 2-158 60-222 (410)
31 3ly5_A ATP-dependent RNA helic 99.1 1.2E-09 4E-14 112.7 15.1 155 2-158 77-244 (262)
32 3eiq_A Eukaryotic initiation f 99.1 7E-10 2.4E-14 119.5 13.5 155 2-157 63-225 (414)
33 1z3i_X Similar to RAD54-like; 99.1 1.8E-08 6.1E-13 117.1 26.0 151 2-158 56-232 (644)
34 2v1x_A ATP-dependent DNA helic 99.0 2.3E-09 8E-14 123.4 17.5 167 3-180 46-229 (591)
35 1s2m_A Putative ATP-dependent 99.0 3.8E-09 1.3E-13 113.5 18.0 156 2-158 44-206 (400)
36 3fho_A ATP-dependent RNA helic 99.0 9.5E-10 3.2E-14 124.0 13.7 155 3-158 143-303 (508)
37 1oyw_A RECQ helicase, ATP-depe 99.0 3.3E-09 1.1E-13 120.3 14.8 166 3-179 27-202 (523)
38 2db3_A ATP-dependent RNA helic 99.0 3.1E-08 1.1E-12 109.2 21.3 166 2-174 79-258 (434)
39 3oiy_A Reverse gyrase helicase 99.0 1.7E-09 5.9E-14 117.6 11.1 152 2-157 22-204 (414)
40 3dkp_A Probable ATP-dependent 99.0 1.4E-08 4.7E-13 102.6 16.7 166 2-174 52-232 (245)
41 3fht_A ATP-dependent RNA helic 98.9 1.5E-08 5E-13 108.9 17.8 155 2-158 48-212 (412)
42 3h1t_A Type I site-specific re 98.9 1.6E-09 5.6E-14 123.8 10.1 145 2-158 179-343 (590)
43 3fmo_B ATP-dependent RNA helic 98.9 1.6E-08 5.5E-13 106.6 16.2 163 3-173 116-288 (300)
44 2fwr_A DNA repair protein RAD2 98.9 4.6E-09 1.6E-13 116.3 12.0 184 2-213 94-278 (472)
45 2i4i_A ATP-dependent RNA helic 98.9 3.7E-08 1.3E-12 106.3 18.7 170 2-178 38-236 (417)
46 2xgj_A ATP-dependent RNA helic 98.9 1E-08 3.4E-13 124.9 14.9 148 2-158 87-235 (1010)
47 3l9o_A ATP-dependent RNA helic 98.9 9E-09 3.1E-13 126.4 13.6 162 2-175 185-346 (1108)
48 4a4z_A Antiviral helicase SKI2 98.8 1.2E-08 4E-13 124.2 13.3 149 3-158 41-190 (997)
49 2fz4_A DNA repair protein RAD2 98.8 1.3E-08 4.4E-13 103.7 11.5 136 2-158 94-230 (237)
50 3dmq_A RNA polymerase-associat 98.8 2.8E-09 9.5E-14 129.4 7.5 170 2-176 154-334 (968)
51 2va8_A SSO2462, SKI2-type heli 98.8 5.1E-08 1.7E-12 114.0 14.7 151 2-158 31-187 (715)
52 3i5x_A ATP-dependent RNA helic 98.7 6.5E-08 2.2E-12 109.5 14.1 169 2-176 95-288 (563)
53 2zj8_A DNA helicase, putative 98.7 3.7E-08 1.3E-12 115.5 12.2 151 2-158 24-181 (720)
54 3fmp_B ATP-dependent RNA helic 98.7 8.5E-08 2.9E-12 106.5 14.2 154 3-158 116-279 (479)
55 2p6r_A Afuhel308 helicase; pro 98.7 2.4E-08 8.2E-13 116.7 10.0 163 2-175 26-194 (702)
56 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 5.3E-08 1.8E-12 118.6 11.6 151 2-158 272-440 (1038)
57 3sqw_A ATP-dependent RNA helic 98.7 1.8E-07 6.3E-12 106.7 15.0 168 2-175 44-236 (579)
58 2eyq_A TRCF, transcription-rep 98.6 2.9E-07 9.8E-12 113.6 14.6 145 3-158 605-763 (1151)
59 1gm5_A RECG; helicase, replica 98.6 1.3E-07 4.3E-12 112.3 10.3 147 2-158 369-528 (780)
60 4ddu_A Reverse gyrase; topoiso 98.4 6.8E-07 2.3E-11 109.8 12.9 150 3-156 80-260 (1104)
61 3llm_A ATP-dependent RNA helic 98.3 8.6E-07 2.9E-11 89.5 8.3 152 3-158 63-220 (235)
62 4f92_B U5 small nuclear ribonu 98.3 6.3E-06 2.2E-10 105.2 16.4 163 4-177 929-1107(1724)
63 4f92_B U5 small nuclear ribonu 98.3 6.9E-06 2.4E-10 104.8 16.7 160 4-176 82-267 (1724)
64 1gku_B Reverse gyrase, TOP-RG; 98.2 1.9E-06 6.4E-11 105.6 9.4 147 4-158 59-227 (1054)
65 2v6i_A RNA helicase; membrane, 98.1 1.1E-05 3.6E-10 89.2 10.7 130 18-158 3-136 (431)
66 2jlq_A Serine protease subunit 98.0 2.1E-05 7.1E-10 87.3 10.4 139 9-158 11-153 (451)
67 2z83_A Helicase/nucleoside tri 97.9 1.7E-05 5.8E-10 88.3 9.4 137 11-158 15-155 (459)
68 2xau_A PRE-mRNA-splicing facto 97.8 2.4E-05 8.3E-10 92.8 8.1 150 4-157 96-251 (773)
69 3o8b_A HCV NS3 protease/helica 97.6 3E-05 1E-09 90.3 4.7 132 14-158 229-362 (666)
70 3crv_A XPD/RAD3 related DNA he 97.6 0.00021 7.3E-09 81.2 11.3 128 3-134 5-191 (551)
71 1yks_A Genome polyprotein [con 97.6 1.5E-05 5.1E-10 88.3 1.4 133 14-158 5-142 (440)
72 2whx_A Serine protease/ntpase/ 97.5 0.00022 7.5E-09 82.5 9.8 135 13-158 182-320 (618)
73 2wv9_A Flavivirin protease NS2 97.4 0.00029 9.9E-09 82.3 10.0 134 14-158 238-375 (673)
74 2vl7_A XPD; helicase, unknown 97.3 0.0003 1E-08 79.9 7.1 123 3-130 9-189 (540)
75 2fsf_A Preprotein translocase 97.0 0.0015 5.1E-08 77.4 9.5 118 6-128 79-207 (853)
76 2ipc_A Preprotein translocase 97.0 0.002 6.8E-08 76.7 10.5 149 6-173 84-246 (997)
77 1nkt_A Preprotein translocase 96.8 0.0029 9.8E-08 75.4 10.2 108 19-128 126-244 (922)
78 1tf5_A Preprotein translocase 96.8 0.0036 1.2E-07 74.3 10.4 118 6-128 88-216 (844)
79 3rc3_A ATP-dependent RNA helic 96.1 0.011 3.9E-07 69.0 9.1 121 18-156 156-281 (677)
80 2o0j_A Terminase, DNA packagin 93.7 0.11 3.9E-06 56.5 7.8 117 2-129 164-287 (385)
81 2gk6_A Regulator of nonsense t 91.4 0.86 2.9E-05 52.4 11.5 121 3-129 182-353 (624)
82 3cpe_A Terminase, DNA packagin 91.0 0.34 1.2E-05 55.4 7.6 143 2-158 164-315 (592)
83 2xzl_A ATP-dependent helicase 89.3 0.71 2.4E-05 54.9 8.6 121 3-129 362-531 (802)
84 3jux_A Protein translocase sub 88.1 1.3 4.4E-05 52.2 9.3 128 3-150 75-268 (822)
85 4b3f_X DNA-binding protein smu 87.5 1 3.4E-05 52.0 8.1 61 4-66 192-254 (646)
86 2wjy_A Regulator of nonsense t 86.8 3.4 0.00012 49.1 12.3 63 3-66 358-421 (800)
87 1w36_D RECD, exodeoxyribonucle 86.7 3.9 0.00013 46.9 12.4 62 4-66 152-217 (608)
88 4a15_A XPD helicase, ATP-depen 86.0 0.69 2.4E-05 53.3 5.6 62 3-65 5-71 (620)
89 3e1s_A Exodeoxyribonuclease V, 82.5 2.7 9.4E-05 47.9 8.6 103 4-130 192-294 (574)
90 1t5i_A C_terminal domain of A 77.3 2.4 8.3E-05 40.0 5.0 39 379-438 14-52 (172)
91 2hjv_A ATP-dependent RNA helic 76.8 2.1 7.3E-05 39.8 4.4 40 378-438 17-56 (163)
92 3upu_A ATP-dependent DNA helic 76.8 3.8 0.00013 44.9 7.1 63 4-66 28-95 (459)
93 2jgn_A DBX, DDX3, ATP-dependen 75.8 2.3 7.8E-05 40.8 4.4 41 378-438 27-67 (185)
94 3u61_B DNA polymerase accessor 74.5 16 0.00054 37.5 10.8 43 115-157 105-147 (324)
95 2v1u_A Cell division control p 72.9 21 0.00073 36.8 11.4 42 115-156 130-177 (387)
96 1z5z_A Helicase of the SNF2/RA 71.6 3.4 0.00012 42.3 4.7 41 379-438 93-133 (271)
97 1fuk_A Eukaryotic initiation f 69.8 5 0.00017 37.2 5.1 38 380-438 14-51 (165)
98 2rb4_A ATP-dependent RNA helic 68.7 4 0.00014 38.3 4.2 24 416-439 33-56 (175)
99 1wp9_A ATP-dependent RNA helic 63.4 6.1 0.00021 41.8 4.8 53 643-696 438-491 (494)
100 2chg_A Replication factor C sm 56.3 1.2E+02 0.0041 27.9 12.2 42 115-157 102-143 (226)
101 3eaq_A Heat resistant RNA depe 55.5 10 0.00036 36.8 4.6 38 380-438 15-52 (212)
102 2qby_A CDC6 homolog 1, cell di 55.1 43 0.0015 34.4 9.5 36 19-54 47-85 (386)
103 1l8q_A Chromosomal replication 54.5 68 0.0023 32.7 10.9 38 19-56 39-76 (324)
104 1njg_A DNA polymerase III subu 52.5 1E+02 0.0036 28.6 11.1 42 116-158 127-168 (250)
105 2z4s_A Chromosomal replication 50.9 65 0.0022 35.0 10.5 38 19-56 132-171 (440)
106 2rb4_A ATP-dependent RNA helic 49.2 1.6E+02 0.0054 27.0 14.1 133 30-176 21-162 (175)
107 1a5t_A Delta prime, HOLB; zinc 48.6 1.4E+02 0.0046 30.9 12.1 71 115-194 108-178 (334)
108 2d7d_A Uvrabc system protein B 48.1 1.8E+02 0.0063 33.3 14.2 105 44-155 444-555 (661)
109 2p6n_A ATP-dependent RNA helic 47.8 1.1E+02 0.0039 28.9 10.6 99 45-154 54-159 (191)
110 1fuk_A Eukaryotic initiation f 47.1 1.3E+02 0.0044 27.3 10.6 94 22-124 9-107 (165)
111 3i32_A Heat resistant RNA depe 47.1 1.2E+02 0.004 31.3 11.3 92 25-125 10-106 (300)
112 1fnn_A CDC6P, cell division co 46.2 78 0.0027 32.6 9.9 36 20-55 47-83 (389)
113 2p6n_A ATP-dependent RNA helic 45.7 17 0.00058 34.8 4.3 21 418-438 55-75 (191)
114 1xti_A Probable ATP-dependent 44.6 2.4E+02 0.008 28.8 13.3 144 30-193 237-388 (391)
115 1sxj_D Activator 1 41 kDa subu 44.2 54 0.0019 33.4 8.2 70 115-193 133-202 (353)
116 1w5s_A Origin recognition comp 44.2 54 0.0019 34.2 8.3 21 19-39 50-74 (412)
117 2orw_A Thymidine kinase; TMTK, 42.8 44 0.0015 31.8 6.7 53 114-171 75-128 (184)
118 2yjt_D ATP-dependent RNA helic 48.7 5.2 0.00018 37.4 0.0 38 381-439 15-52 (170)
119 2qby_B CDC6 homolog 3, cell di 42.3 1.1E+02 0.0036 31.6 10.2 38 118-156 136-174 (384)
120 3i32_A Heat resistant RNA depe 40.7 25 0.00086 36.5 4.9 39 380-439 12-50 (300)
121 1z5z_A Helicase of the SNF2/RA 40.6 27 0.00093 35.5 5.1 60 643-705 184-248 (271)
122 3bos_A Putative DNA replicatio 40.4 53 0.0018 31.1 7.0 35 19-53 54-88 (242)
123 3fht_A ATP-dependent RNA helic 39.2 3.3E+02 0.011 27.8 13.6 106 45-157 266-380 (412)
124 3n70_A Transport activator; si 38.1 71 0.0024 28.6 7.0 37 119-156 80-116 (145)
125 2i4i_A ATP-dependent RNA helic 36.1 2.5E+02 0.0087 28.9 12.0 126 33-175 265-397 (417)
126 1hv8_A Putative ATP-dependent 35.8 1.8E+02 0.0061 29.2 10.5 116 44-175 237-359 (367)
127 1c4o_A DNA nucleotide excision 35.6 3.1E+02 0.011 31.3 13.5 104 44-154 438-548 (664)
128 2hjv_A ATP-dependent RNA helic 35.4 2.5E+02 0.0086 25.3 12.8 130 29-176 21-157 (163)
129 3mwy_W Chromo domain-containin 35.4 38 0.0013 39.8 5.9 45 375-438 549-593 (800)
130 1sxj_E Activator 1 40 kDa subu 34.3 94 0.0032 31.8 8.1 43 115-158 134-176 (354)
131 1z3i_X Similar to RAD54-like; 32.1 51 0.0017 37.7 6.1 52 643-694 488-542 (644)
132 1jbk_A CLPB protein; beta barr 31.4 32 0.0011 31.0 3.6 21 19-39 45-65 (195)
133 3pey_A ATP-dependent RNA helic 31.0 2.6E+02 0.0087 28.4 10.8 106 45-157 243-357 (395)
134 1s2m_A Putative ATP-dependent 29.6 51 0.0018 34.2 5.2 23 416-438 257-279 (400)
135 2jgn_A DBX, DDX3, ATP-dependen 29.3 1.3E+02 0.0045 28.2 7.6 132 27-175 29-167 (185)
136 3hgt_A HDA1 complex subunit 3; 28.2 35 0.0012 36.2 3.5 49 638-686 189-243 (328)
137 2j0s_A ATP-dependent RNA helic 27.8 4E+02 0.014 27.3 11.9 96 30-138 263-363 (410)
138 2gno_A DNA polymerase III, gam 27.1 94 0.0032 32.1 6.6 69 115-194 82-150 (305)
139 2kjq_A DNAA-related protein; s 27.1 70 0.0024 29.2 5.0 27 19-45 37-64 (149)
140 3kl4_A SRP54, signal recogniti 26.0 2.8E+02 0.0097 30.2 10.4 118 21-157 101-224 (433)
141 1z63_A Helicase of the SNF2/RA 25.5 43 0.0015 36.4 3.7 63 643-706 413-478 (500)
142 3ec2_A DNA replication protein 25.2 1.4E+02 0.0048 27.3 6.9 37 19-55 40-77 (180)
143 1ny5_A Transcriptional regulat 24.9 1.6E+02 0.0055 31.2 8.1 95 19-142 162-257 (387)
144 2fsf_A Preprotein translocase 24.9 73 0.0025 38.0 5.7 40 381-439 424-463 (853)
145 2oca_A DAR protein, ATP-depend 24.1 4.1E+02 0.014 28.5 11.4 114 33-154 335-456 (510)
146 4fcw_A Chaperone protein CLPB; 24.0 4.7E+02 0.016 25.7 11.1 36 19-54 49-84 (311)
147 3jux_A Protein translocase sub 24.0 83 0.0028 37.2 5.8 41 380-439 456-496 (822)
148 1tf5_A Preprotein translocase 23.8 81 0.0028 37.6 5.8 40 381-439 415-454 (844)
149 3co5_A Putative two-component 23.4 1.2E+02 0.004 27.1 5.7 38 119-157 79-118 (143)
150 2bjv_A PSP operon transcriptio 23.1 1.6E+02 0.0056 28.7 7.3 45 11-56 23-68 (265)
151 3oiy_A Reverse gyrase helicase 22.7 87 0.003 32.9 5.4 38 379-438 236-273 (414)
152 3h1t_A Type I site-specific re 21.2 1.2E+02 0.0041 33.8 6.4 25 415-439 437-461 (590)
153 1t5i_A C_terminal domain of A 21.0 4.7E+02 0.016 23.7 12.5 131 29-177 17-155 (172)
154 1ojl_A Transcriptional regulat 20.6 1.7E+02 0.0059 29.8 7.0 46 19-65 27-73 (304)
155 3eaq_A Heat resistant RNA depe 20.2 5.5E+02 0.019 24.2 14.2 101 26-139 14-119 (212)
No 1
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=7e-25 Score=238.49 Aligned_cols=368 Identities=15% Similarity=0.183 Sum_probs=283.5
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~it 77 (715)
+.+||++++..++.. ++|++.|||+|||.++..++. ....+++.+|++.|+..+..+..+.+... ....+..++
T Consensus 10 l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 10 PRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred ccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 568999999999987 999999999999966655555 22234677888888877776554444321 112567889
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
|+....++..+|....|+++||+.|..++..+.+....+..|||||||++.+.+.+.++.+.++...+...+.+||++|.
T Consensus 88 g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 88 GEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp SCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred CCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999998
Q ss_pred ccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 005084 158 AMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGIQKAILEVMDACLKEMRKTNKVDVE 237 (715)
Q Consensus 158 sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~Iq~~l~~~~~~~l~ELkr~n~ld~~ 237 (715)
. +...+..++..|++..+.++..++.++.+++ .+..+..+.+.+++.+..+...+...+...++++...+.+...
T Consensus 168 ~---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
T 1wp9_A 168 S---TPEKIMEVINNLGIEHIEYRSENSPDVRPYV--KGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESS 242 (494)
T ss_dssp S---SHHHHHHHHHHTTCCEEEECCTTSTTTGGGC--CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred C---CcHHHHHHHHhcChheeeccCCCcHHHHHhc--CCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4 6678999999999999999999999999999 5677888999999999999999999999999999998864332
Q ss_pred ccchhhccchhHHHHHHhhcCcccccchHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccchhHH
Q 005084 238 DLTVENGLFKSFDEILRRQLDPIWHILGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAESSY 317 (715)
Q Consensus 238 ~~t~e~~L~~~f~~~ir~qL~p~wh~~s~ktkqLv~Dl~~Lr~Ll~~L~~~d~vsF~~yLe~l~~~~~~~S~Wl~~~aa~ 317 (715)
...+...-...+...++..+.. .....|.....+..+..+.+.+..+..++...+..|+..+...... .......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 317 (494)
T 1wp9_A 243 SPDIPKKEVLRAGQIINEEMAK-GNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA----GSTKASK 317 (494)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTT-TCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TCCHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhhc-cccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc----ccchhhh
Confidence 2222211111234444544442 2334566667788889999999999999999999999988765321 1234444
Q ss_pred HHHHHHHHH-hccccccCcccccCCCcccccccccccccCCCCCCCCCCCCCCchhhhhhhcccCCcHHHHHHHHHHHHH
Q 005084 318 KIFDYAKKR-VYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSSTSTKVVLEEVLEEAPKWKVLREVLEEIEE 396 (715)
Q Consensus 318 ~lf~~Ak~R-vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEe~PKW~~L~eiL~eI~~ 396 (715)
.++.....+ +..... .........||+..|.++|.++..
T Consensus 318 ~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~ 357 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLV----------------------------------------QAKEIGLDHPKMDKLKEIIREQLQ 357 (494)
T ss_dssp HHHTSHHHHHHHHHHH----------------------------------------HHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHH----------------------------------------HHHhcCCCChHHHHHHHHHHHHhc
Confidence 444322111 000000 012223678999999999988654
Q ss_pred HHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 397 ERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 397 e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
. .+.+++||||++.++|..|.++|.
T Consensus 358 ~-----------------~~~~k~lVF~~~~~~~~~l~~~L~ 382 (494)
T 1wp9_A 358 R-----------------KQNSKIIVFTNYRETAKKIVNELV 382 (494)
T ss_dssp H-----------------CTTCCEEEECSCHHHHHHHHHHHH
T ss_pred c-----------------CCCCeEEEEEccHHHHHHHHHHHH
Confidence 3 345799999999999999998874
No 2
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.82 E-value=1.3e-17 Score=187.17 Aligned_cols=372 Identities=12% Similarity=0.125 Sum_probs=232.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCC---CCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPS---QGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~---~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+-+||.+++..++.. .|+|+++|||.|||.+....+. +...+ ++.+|++.|+..+..|+.+.+... ....+
T Consensus 8 ~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 86 (556)
T 4a2p_A 8 ARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 86 (556)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceE
Confidence 458999999998864 4999999999999955443333 22322 677888889888776654443221 12346
Q ss_pred eeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCC-CCCCeeEEEEecccccCCCChHHHHHHHHHhc-----CcC
Q 005084 74 SEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRL-PTSNLAGLIILNTHALTENSTETFICRIIKSL-----NRE 146 (715)
Q Consensus 74 ~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri-~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~-----nk~ 146 (715)
..++|+.+.. .+..++....|+++||..|...+..+.+ ....+..|||||||++.+...+..++..|... ++.
T Consensus 87 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (556)
T 4a2p_A 87 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQL 166 (556)
T ss_dssp EECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---C
T ss_pred EEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCC
Confidence 6788887654 4567777899999999999999999988 89999999999999999888787777655544 566
Q ss_pred ccEEeecCCCccc-----ccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEec--CCccHHHHHHHHHH
Q 005084 147 AYIRAFSDKPTAM-----VSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVP--MSKYMGGIQKAILE 219 (715)
Q Consensus 147 gfIkAfSdsP~sf-----~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~--lt~~m~~Iq~~l~~ 219 (715)
..+.+|||+|..- ..-+..+.+++.+|....+...+....++..++ ..+....+.+. .++....+...+++
T Consensus 167 ~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (556)
T 4a2p_A 167 PQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM--NKPEIDVRLVKRRIHNPFAAIISNLMS 244 (556)
T ss_dssp CEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHT--CCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcC--CCCceEEEEcCCCcCChHHHHHHHHHH
Confidence 8899999999641 001256778889999999999888889999998 45666666666 77777777777777
Q ss_pred HHHHHHHHHHHcCC---CCCCccchhhccchhHHHHHHhhcCcccc--------cchHhHHHHHHHHHHHHHHHHHHHhc
Q 005084 220 VMDACLKEMRKTNK---VDVEDLTVENGLFKSFDEILRRQLDPIWH--------ILGKKTKQLVSDLKTLRKLLDYLVRY 288 (715)
Q Consensus 220 ~~~~~l~ELkr~n~---ld~~~~t~e~~L~~~f~~~ir~qL~p~wh--------~~s~ktkqLv~Dl~~Lr~Ll~~L~~~ 288 (715)
.++..++.+..... +...++...+ ... +-..++... ..|+ .+..........+..+.+.+......
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 245 ETEALMRTIYSVDTLSQNSKKDFGTQN-YEH-WIVVTQRKC-RLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHCC---------CCCSSHH-HHH-HHHHHHHHH-HHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhhhhcccccccchhh-HHH-HHHHHHHHH-HhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66666554332211 1111111110 000 111111100 0011 11111222334455666667777777
Q ss_pred CHHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCC
Q 005084 289 DAVTYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSST 368 (715)
Q Consensus 289 d~vsF~~yLe~l~~~~~~~S~Wl~~~aa~~lf~~Ak~Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (715)
+......|+.......... . +.+....+...-...+-....
T Consensus 322 ~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~------------------------------------ 362 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNG-P--YTELEQHLTAKFQEKEPELIA------------------------------------ 362 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHS-C--CCHHHHHHHHHHHTTHHHHHH------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhc-C--CCHHHHHHHHHHhhHHHHhhh------------------------------------
Confidence 7777777776653322111 1 223333333211111100000
Q ss_pred CchhhhhhhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 369 STKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 369 ~~~~~~~~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.......++||+..|.++|.+.... .++.++||||++.++|..|.++|..
T Consensus 363 ----~~~~~~~~~~K~~~L~~~l~~~~~~-----------------~~~~k~lVF~~~~~~~~~l~~~L~~ 412 (556)
T 4a2p_A 363 ----LSKDETNENPKLEELVCILDDAYRY-----------------NPQTRTLLFAKTRALVSALKKCMEE 412 (556)
T ss_dssp ----HHHCSSSCCHHHHHHHHHHHHHHHH-----------------CTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred ----hccCCCCCChHHHHHHHHHHHHhcC-----------------CCCceEEEEEccHHHHHHHHHHHHh
Confidence 0111224689999999999876533 4567999999999999999998853
No 3
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.80 E-value=2.6e-17 Score=184.06 Aligned_cols=215 Identities=10% Similarity=0.094 Sum_probs=159.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCC---CCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPS---QGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~---~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+-+||.+++..++.. .|+|+++|||.|||.+....+. +...+ ++.+|++.|+..+..|..+.+... ....+
T Consensus 5 ~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 5 PRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 458999999998864 4999999999999955444443 33323 677888899988776654443221 12356
Q ss_pred eeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCC-CCCCeeEEEEecccccCCCChHHHHHHHHHhc------Cc
Q 005084 74 SEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRL-PTSNLAGLIILNTHALTENSTETFICRIIKSL------NR 145 (715)
Q Consensus 74 ~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri-~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~------nk 145 (715)
..++|+.+.. ....++....|+++||..|...+-.+.+ ....+..|||||||++.+...+..++..|... +.
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 7788888654 4467778899999999999999988888 89999999999999999987788777655543 25
Q ss_pred CccEEeecCCCcccc-----cCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEec--CCccHHHHHHHHH
Q 005084 146 EAYIRAFSDKPTAMV-----SGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVP--MSKYMGGIQKAIL 218 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~-----~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~--lt~~m~~Iq~~l~ 218 (715)
...+.+|||+|..-. .-+..+.+++..|++..+...+....++..++ ..+....+.+. +++....+-..++
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVV--YKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTC--CCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhc--CCCceEEEEecCcccChHHHHHHHHH
Confidence 568999999996410 01467778889999999999888888999888 45666666666 6666555444444
Q ss_pred H
Q 005084 219 E 219 (715)
Q Consensus 219 ~ 219 (715)
.
T Consensus 242 ~ 242 (555)
T 3tbk_A 242 K 242 (555)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.79 E-value=7.4e-17 Score=191.42 Aligned_cols=372 Identities=12% Similarity=0.124 Sum_probs=231.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCC---CCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPS---QGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~---~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+-+||.+++..++.. .|+||++|||.|||.+....+. +...+ ++.+|++.|+..+..|....+... ....+
T Consensus 249 l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (797)
T 4a2q_A 249 ARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (797)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceE
Confidence 458999999998865 5999999999999955444333 22322 678888999888876644333211 12356
Q ss_pred eeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCC-CCCCeeEEEEecccccCCCChHHHHHHHHHhc-----CcC
Q 005084 74 SEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRL-PTSNLAGLIILNTHALTENSTETFICRIIKSL-----NRE 146 (715)
Q Consensus 74 ~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri-~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~-----nk~ 146 (715)
..++|+.+.. .+..++....|+++||..|..++-.+.+ +...+..|||||||++.+.+.+..|++.|... ++.
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~ 407 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQL 407 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCC
Confidence 7788887654 4667778889999999999999999988 89999999999999999988888888766655 667
Q ss_pred ccEEeecCCCcccc-----cCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEec--CCccHHHHHHHHHH
Q 005084 147 AYIRAFSDKPTAMV-----SGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVP--MSKYMGGIQKAILE 219 (715)
Q Consensus 147 gfIkAfSdsP~sf~-----~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~--lt~~m~~Iq~~l~~ 219 (715)
..+.+|||+|..-. .-+..+..++.+|+...+........++..++. .+....+.++ +++.+..+...++.
T Consensus 408 ~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (797)
T 4a2q_A 408 PQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMN--KPEIDVRLVKRRIHNPFAAIISNLMS 485 (797)
T ss_dssp CEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSC--CCCCEEEECCCCSCCHHHHHHHHHHH
T ss_pred CeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcC--CCceEEEecCCCCCcHHHHHHHHHHH
Confidence 88999999996310 012577888899999999988888889999984 4555555555 77887777776666
Q ss_pred HHHHHHHHHHHcCC---CCCCccchhhccchhHHHHHHhhcCcccc--------cchHhHHHHHHHHHHHHHHHHHHHhc
Q 005084 220 VMDACLKEMRKTNK---VDVEDLTVENGLFKSFDEILRRQLDPIWH--------ILGKKTKQLVSDLKTLRKLLDYLVRY 288 (715)
Q Consensus 220 ~~~~~l~ELkr~n~---ld~~~~t~e~~L~~~f~~~ir~qL~p~wh--------~~s~ktkqLv~Dl~~Lr~Ll~~L~~~ 288 (715)
-+...++....... +....+.... +.. +...++..- ..|. ++..........+..+.+.+......
T Consensus 486 ~i~~~~~~~~~l~~l~~~~~~~~g~~~-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 486 ETEALMRTIYSVDTLSQNSKKDFGTQN-YEH-WIVVTQRKC-RLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHC------------CCSSHH-HHH-HHHHHHHHH-HHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhHHhhhhccccccchh-HHH-HHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 66555444221110 1111111111 000 111111100 0011 01111112233445556666666777
Q ss_pred CHHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCC
Q 005084 289 DAVTYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSST 368 (715)
Q Consensus 289 d~vsF~~yLe~l~~~~~~~S~Wl~~~aa~~lf~~Ak~Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (715)
+....+.|+.......... -+.+....+...-...+-....
T Consensus 563 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~~------------------------------------ 603 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNG---PYTELEQHLTAKFQEKEPELIA------------------------------------ 603 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHTTHHHHHH------------------------------------
T ss_pred cHHHHHHHHHHHHHHHhcc---CccHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 7777777776643322111 1234344333321111100000
Q ss_pred CchhhhhhhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 369 STKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 369 ~~~~~~~~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.......++||...|.++|.+.... .+++++||||+++++|..|.++|..
T Consensus 604 ----~~~~~~~~~~K~~~L~~lL~~~~~~-----------------~~~~kvLIF~~~~~~~~~L~~~L~~ 653 (797)
T 4a2q_A 604 ----LSKDETNENPKLEELVCILDDAYRY-----------------NPQTRTLLFAKTRALVSALKKCMEE 653 (797)
T ss_dssp ----HHHCTTCCCHHHHHHHHHHHHHHHH-----------------CSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred ----hhcCCCCCChHHHHHHHHHHHHhcc-----------------CCCCeEEEEECcHHHHHHHHHHHHh
Confidence 0011124689999999999876433 4568999999999999999998853
No 5
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.77 E-value=1.2e-16 Score=192.94 Aligned_cols=372 Identities=12% Similarity=0.125 Sum_probs=230.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCC---CCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPS---QGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~---~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+-+||.+++..++.. .|+||++|||.|||.+....+. +...+ ++.+|++.|+..+..|....+... ....+
T Consensus 249 ~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (936)
T 4a2w_A 249 ARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (936)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceE
Confidence 458999999998874 5999999999999955444443 22222 677889999888876644333221 12356
Q ss_pred eeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCC-CCCCeeEEEEecccccCCCChHHHHHHHHHhc-----CcC
Q 005084 74 SEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRL-PTSNLAGLIILNTHALTENSTETFICRIIKSL-----NRE 146 (715)
Q Consensus 74 ~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri-~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~-----nk~ 146 (715)
..++|+.+.. .+..++....|+++||..|..++-.+.+ ....+..|||||||++.+...+..++..|... ++.
T Consensus 328 ~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~ 407 (936)
T 4a2w_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQL 407 (936)
T ss_dssp EEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCC
T ss_pred EEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCc
Confidence 7788887654 4567778889999999999999999888 89999999999999999988888888777654 566
Q ss_pred ccEEeecCCCccc-----ccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEec--CCccHHHHHHHHHH
Q 005084 147 AYIRAFSDKPTAM-----VSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVP--MSKYMGGIQKAILE 219 (715)
Q Consensus 147 gfIkAfSdsP~sf-----~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~--lt~~m~~Iq~~l~~ 219 (715)
+.+.+|||+|..- ..-+..+.+++.+|....+...+....++..++ ..+....+.+. +++....+...++.
T Consensus 408 ~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~l~~l~~ 485 (936)
T 4a2w_A 408 PQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM--NKPEIDVRLVKRRIHNPFAAIISNLMS 485 (936)
T ss_dssp CEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHS--CCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhc--cCCcceEEecccccCcHHHHHHHHHHH
Confidence 8899999999631 001256778899999999999888889999998 44556656666 77777766666665
Q ss_pred HHHHHHHHHHHcCC---CCCCccchhhccchhHHHHHHhhcCccccc--------chHhHHHHHHHHHHHHHHHHHHHhc
Q 005084 220 VMDACLKEMRKTNK---VDVEDLTVENGLFKSFDEILRRQLDPIWHI--------LGKKTKQLVSDLKTLRKLLDYLVRY 288 (715)
Q Consensus 220 ~~~~~l~ELkr~n~---ld~~~~t~e~~L~~~f~~~ir~qL~p~wh~--------~s~ktkqLv~Dl~~Lr~Ll~~L~~~ 288 (715)
.+...++....... +...++.... ... +...++... ..|+- +..........+..+.+.+....+.
T Consensus 486 ~i~~~~~~~l~~~~l~~~~~~~~g~~~-y~~-~l~~l~k~~-~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 486 ETEALMRTIAYVDTLSQNSKKDFGTQN-YEH-WIVVTQRKC-RLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHC------------CCSSHH-HHH-HHHHHHHHH-HHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhhhhccccccchHH-HHH-HHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 55555433221100 1111111100 000 111111110 00110 0011111223445556666666777
Q ss_pred CHHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHhccccccCcccccCCCcccccccccccccCCCCCCCCCCCCC
Q 005084 289 DAVTYLKYLDTLRVSESFRSVWIFAESSYKIFDYAKKRVYRFTRSDGVELNGQSKSVTGKKRKLKKVDNNEDEDGGTSST 368 (715)
Q Consensus 289 d~vsF~~yLe~l~~~~~~~S~Wl~~~aa~~lf~~Ak~Rvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (715)
+....+.|+..+....... .+.++...+...-...+-.....
T Consensus 563 ~~~~~~~~l~~~~~~~~~~---~~~~~e~~l~~~~~~~~~~l~~~----------------------------------- 604 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNG---PYTELEQHLTAKFQEKEPELIAL----------------------------------- 604 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred hHHHHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 7777777776653322110 12344444433222211110000
Q ss_pred CchhhhhhhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 369 STKVVLEEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 369 ~~~~~~~~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
......++||...|.++|.++... .+++++||||+++++|..|.++|..
T Consensus 605 -----~~~~~~~~~K~~~L~~lL~~~~~~-----------------~~~~rvLIF~~t~~~ae~L~~~L~~ 653 (936)
T 4a2w_A 605 -----SKDETNENPKLEELVCILDDAYRY-----------------NPQTRTLLFAKTRALVSALKKCMEE 653 (936)
T ss_dssp -----HTSTTCCCHHHHHHHHHHHHTTTS-----------------CTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred -----hhccCCCCHHHHHHHHHHHHHhcc-----------------CCCCeEEEEeCCHHHHHHHHHHHhh
Confidence 011124689999999999875321 4568999999999999999998854
No 6
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.75 E-value=5e-16 Score=180.36 Aligned_cols=201 Identities=9% Similarity=0.072 Sum_probs=152.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcC---CCCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSP---SQGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~---~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+-+||.+++..++.. .|++|++|||+|||.++...+. +... .++.+|++.|+.++..|..+.+... ....+
T Consensus 14 lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 92 (696)
T 2ykg_A 14 PRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRV 92 (696)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCE
T ss_pred ccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceE
Confidence 458999999998864 4999999999999955444443 2222 1267888888877776644443221 11245
Q ss_pred eeecCCCCh-hhHHHhhcCCCEEEECchHHHHHhhcCCC-CCCCeeEEEEecccccCCCChHHHHHHHHHhc------Cc
Q 005084 74 SEITADLPA-NHRHTLYSSGQIFFVTPRILIVDLLTQRL-PTSNLAGLIILNTHALTENSTETFICRIIKSL------NR 145 (715)
Q Consensus 74 ~~itge~~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri-~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~------nk 145 (715)
..++|+.+. ..+..++....|+++||.+|..++..+.+ .+..++.|||||||++.+.+.+..++..|... ++
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~ 172 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 172 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSC
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCC
Confidence 678888754 56778888999999999999999999988 79999999999999999999999888755443 46
Q ss_pred CccEEeecCCCcc-----cccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEec
Q 005084 146 EAYIRAFSDKPTA-----MVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVP 205 (715)
Q Consensus 146 ~gfIkAfSdsP~s-----f~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~ 205 (715)
.+.|.|+||+|+. +...+..+.+.+.+|.+..+...++...++..++ ..|......++
T Consensus 173 ~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~--~~p~~~~~~~~ 235 (696)
T 2ykg_A 173 LPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVV--YKPQKFFRKVE 235 (696)
T ss_dssp CCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHS--CCCEEEEEECC
T ss_pred CCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhc--CCCceeEEecC
Confidence 7889999999983 1123567778888899999888888888888888 44555544443
No 7
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.70 E-value=4.7e-16 Score=180.66 Aligned_cols=218 Identities=12% Similarity=0.078 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc----CCCCEEEEecCCHhHHHHH-HHHhCCC-C-CCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS----PSQGTLLLLSSSPNLKSQI-IHYLAPN-A-PLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~----~~~~lVlvl~~t~~~~~~i-~~~L~~~-~-~~~ 72 (715)
+-+||.+++..++.. .|+||++|||+|||.+....+. +.. ..++.+|++.|+..+..|. .+.+... + ...
T Consensus 8 l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 8 LRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred ccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 468999999999884 4999999999999955444443 111 1226677777777666554 4444321 1 135
Q ss_pred CeeecCCCChhh-HHHhhcCCCEEEECchHHHHHh------hcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcC-
Q 005084 73 PSEITADLPANH-RHTLYSSGQIFFVTPRILIVDL------LTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN- 144 (715)
Q Consensus 73 ~~~itge~~~~~-R~~lY~~ggV~fvTprIL~~DL------Ls~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n- 144 (715)
+..++|+.+..+ +..++....|+++||..|..++ -.+.+....+..|||||||++.....|..+++.|....
T Consensus 87 v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~ 166 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKL 166 (699)
T ss_dssp EEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHH
T ss_pred EEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhh
Confidence 678888876544 4677788999999999999998 45668999999999999999987776666665444332
Q ss_pred -------------cCccEEeecCCCccccc-----CcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecC
Q 005084 145 -------------REAYIRAFSDKPTAMVS-----GFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPM 206 (715)
Q Consensus 145 -------------k~gfIkAfSdsP~sf~~-----g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~l 206 (715)
+.+.+.||||+|..-.. .+..+.+++..|....+........++..++......+..+....
T Consensus 167 ~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 246 (699)
T 4gl2_A 167 KNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATR 246 (699)
T ss_dssp HHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC---
T ss_pred cccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccccc
Confidence 56789999999996100 145778888999998888887777888888854333455555555
Q ss_pred CccHHHHHHHHHHH
Q 005084 207 SKYMGGIQKAILEV 220 (715)
Q Consensus 207 t~~m~~Iq~~l~~~ 220 (715)
++.+..+-..+.+.
T Consensus 247 ~~~~~~~l~~l~~~ 260 (699)
T 4gl2_A 247 EDPFKEKLLEIMTR 260 (699)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 55555444444333
No 8
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.36 E-value=1.7e-11 Score=122.05 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHH-H-Hhc-CCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVL-L-LHS-PSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll-~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~ 75 (715)
+-+||++++..++.. .|.+++.|||-|||.+.+..+ . +.. ..+..++++.|+..+..|+.+.+... ....+..
T Consensus 37 ~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 115 (224)
T 1qde_A 37 PSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 115 (224)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEE
Confidence 458999999998875 599999999999995533222 2 222 34568888999988887765544321 1224566
Q ss_pred ecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCC
Q 005084 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 76 itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
++|..+..++...+....|++.||..|..-+..+.+....+..|||||||++.+..-...+.++++..++...+.+|||+
T Consensus 116 ~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp ECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred EeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEee
Confidence 77877776666667779999999999998888899999999999999999998766667777888777777889999999
Q ss_pred CcccccCcchHHHHHHHhccCeeEe
Q 005084 156 PTAMVSGFAKTERIMKSLFIRKLHL 180 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L~I~~v~l 180 (715)
+.. .+++.++.+.-..+.+
T Consensus 196 ~~~------~~~~~~~~~~~~p~~i 214 (224)
T 1qde_A 196 MPN------DVLEVTTKFMRNPVRI 214 (224)
T ss_dssp CCH------HHHHHHHHHCSSCEEE
T ss_pred cCH------HHHHHHHHHCCCCEEE
Confidence 974 4666666554443333
No 9
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.36 E-value=1e-11 Score=123.54 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hhc--CCCCEEEEecCCHhHHHHHHHHhCC----CCCCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHS--PSQGTLLLLSSSPNLKSQIIHYLAP----NAPLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~--~~~~lVlvl~~t~~~~~~i~~~L~~----~~~~~~~ 74 (715)
+-+||++.+..++.. .|.+++.|||.|||.+....+. ... ..+..++++.|+..+..|+.+.+.. .....+.
T Consensus 37 ~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 115 (220)
T 1t6n_A 37 PSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 115 (220)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEE
Confidence 458999999998875 4999999999999944333332 212 2234788888888887776544322 1123566
Q ss_pred eecCCCChhhHHHhhcCC--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC-ChHHHHHHHHHhcCcCccEEe
Q 005084 75 EITADLPANHRHTLYSSG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN-STETFICRIIKSLNREAYIRA 151 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~-~~eaFI~rlyr~~nk~gfIkA 151 (715)
.+.|+.+..++.+.+.++ .|++.||..|..-+-.+.+.+..+..|||||||++.+. .....+.++++...+...+.+
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~ 195 (220)
T 1t6n_A 116 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 195 (220)
T ss_dssp EESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEE
Confidence 788888877776666655 89999999999888888999999999999999999764 333455667776666788999
Q ss_pred ecCCCcc
Q 005084 152 FSDKPTA 158 (715)
Q Consensus 152 fSdsP~s 158 (715)
|||+|..
T Consensus 196 ~SAT~~~ 202 (220)
T 1t6n_A 196 FSATLSK 202 (220)
T ss_dssp EESCCCT
T ss_pred EEeecCH
Confidence 9999975
No 10
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.32 E-value=3.2e-11 Score=121.40 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=124.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHH-H-Hh-cCCCCEEEEecCCHhHHHHHHHHhCCC----CCCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVL-L-LH-SPSQGTLLLLSSSPNLKSQIIHYLAPN----APLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll-~-~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~----~~~~~~ 74 (715)
+-+||++.+..++.. .|.+++.|||-|||.+.+..+ . +. ...+..+|++.|+..+..|+.+.+... ....+.
T Consensus 47 ~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125 (230)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEE
Confidence 458999999988874 599999999999995433222 2 22 234568888999988887765544321 123456
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC-hHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS-TETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~-~eaFI~rlyr~~nk~gfIkAfS 153 (715)
.+.|+.+..++...+....|++.||..|..-+-.+.+.+..+..|||||||++.... -...+..+++.-++...+.+||
T Consensus 126 ~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 126 VFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp EECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 788888888888888889999999999998888888999999999999999997653 4555666776666677799999
Q ss_pred CCCcccccCcchHHHHHHHhc
Q 005084 154 DKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~ 174 (715)
|++.. .+.+.++.+.
T Consensus 206 AT~~~------~~~~~~~~~~ 220 (230)
T 2oxc_A 206 ATYPE------FLANALTKYM 220 (230)
T ss_dssp SCCCH------HHHHHHTTTC
T ss_pred eccCH------HHHHHHHHHc
Confidence 99863 3556655443
No 11
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.31 E-value=7.1e-11 Score=115.90 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hh-cCCCCEEEEecCCHhHHHHHHHHhCC----CCCCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LH-SPSQGTLLLLSSSPNLKSQIIHYLAP----NAPLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y-~~~~~lVlvl~~t~~~~~~i~~~L~~----~~~~~~~ 74 (715)
+-+||++++..++.. +|.+++.|||-|||.+....+. +. ...+..++++.|+..+..|+.+.+.. .+...+.
T Consensus 26 ~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 26 PSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 458999999998875 5999999999999943332222 22 23355788888888887775544422 1123456
Q ss_pred eecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
.++|+.... +...+.....|++.||..|..-+..+.+....+..|||||||++.+..-...+.++++.-++..-+.+||
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~S 184 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 184 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEE
Confidence 677777654 3445566678999999999888888889999999999999999988766677777777766677899999
Q ss_pred CCCcccccCcchHHHHHHHhc
Q 005084 154 DKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~ 174 (715)
|++.. .+++.++...
T Consensus 185 AT~~~------~~~~~~~~~l 199 (206)
T 1vec_A 185 ATFPL------SVQKFMNSHL 199 (206)
T ss_dssp SCCCH------HHHHHHHHHC
T ss_pred eeCCH------HHHHHHHHHc
Confidence 99973 4566665443
No 12
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.31 E-value=6.8e-11 Score=115.92 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc----CCCCEEEEecCCHhHHHHHHHHhCCC-CCCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS----PSQGTLLLLSSSPNLKSQIIHYLAPN-APLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~----~~~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~ 74 (715)
+-+||++.+..++.. +|.+++.|||.|||.+....+. ++. ..+..++++.|+..+..++.+.+... ....+.
T Consensus 24 ~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 102 (207)
T 2gxq_A 24 PTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVV 102 (207)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEE
Confidence 458999999998875 5999999999999954333332 221 23567888888988877766555432 112355
Q ss_pred eecCCCCh-hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADLPA-NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
.+.|..+. ..+..+.....|++.||..|..-+..+.+++..+..|||||||++.+......+.++++..++..-+.+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 182 (207)
T 2gxq_A 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFS 182 (207)
T ss_dssp EECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEEC
T ss_pred EEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEE
Confidence 66666544 55667777889999999999888888899999999999999999987766777777877777777899999
Q ss_pred CCCcccccCcchHHHHHHHh
Q 005084 154 DKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L 173 (715)
|+|.. .+++..+..
T Consensus 183 AT~~~------~~~~~~~~~ 196 (207)
T 2gxq_A 183 ATLPS------WAKRLAERY 196 (207)
T ss_dssp SSCCH------HHHHHHHHH
T ss_pred EecCH------HHHHHHHHH
Confidence 99974 355555544
No 13
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.30 E-value=1.4e-10 Score=129.49 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHh---cCCCCeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeee
Q 005084 2 VLEFHQHIIAELL---QEPNGGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l---~~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~i 76 (715)
|.+||++.+.-++ ..+.++|++.++|||||.++..++. +. ....+.+|++.|+....++..+.-.-.+...+.++
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v~~~ 117 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVF 117 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCTTSCEEEC
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCCCceEEEE
Confidence 5789999987653 3445899999999999966555555 32 23345566666666655554433222222245556
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
+|.... ..+....|+++|+..+..|.- +....+..|||||||++....+. ..+..+.- +..++.++|++|
T Consensus 118 ~g~~~~----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~~--~~~~l~~l-~~~~~l~LTaTP 187 (500)
T 1z63_A 118 HEDRSK----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTK--IFKAVKEL-KSKYRIALTGTP 187 (500)
T ss_dssp SSSTTS----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSH--HHHHHHTS-CEEEEEEECSSC
T ss_pred ecCchh----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhHH--HHHHHHhh-ccCcEEEEecCC
Confidence 665421 234567899999999988754 44557899999999999875432 22333322 346789999999
Q ss_pred cc
Q 005084 157 TA 158 (715)
Q Consensus 157 ~s 158 (715)
..
T Consensus 188 ~~ 189 (500)
T 1z63_A 188 IE 189 (500)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.30 E-value=1.5e-10 Score=122.01 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=123.2
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEI 76 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~i 76 (715)
+-+||++.+..++..+++.+++.|||.|||.++...+. +...++..++++.|+..+..|+.+.+... ....+..+
T Consensus 29 ~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 108 (367)
T 1hv8_A 29 PTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKI 108 (367)
T ss_dssp CCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 45899999999988655889999999999965544443 22334667888889988877765544321 11245567
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
.|.....+....+....|++.||..|...+..+.+....+..|||||||++........+.+++...++...+.++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 188 (367)
T 1hv8_A 109 YGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATM 188 (367)
T ss_dssp CTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred ECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeecc
Confidence 77777766666677899999999999999999999999999999999999987766667777887777888999999999
Q ss_pred cc
Q 005084 157 TA 158 (715)
Q Consensus 157 ~s 158 (715)
..
T Consensus 189 ~~ 190 (367)
T 1hv8_A 189 PR 190 (367)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 15
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.28 E-value=6.4e-11 Score=118.58 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=120.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hhc-------CCCCEEEEecCCHhHHHHHHHHhCCC--C
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHS-------PSQGTLLLLSSSPNLKSQIIHYLAPN--A 69 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~-------~~~~lVlvl~~t~~~~~~i~~~L~~~--~ 69 (715)
+-+||++.+..++.. +|.+++.|||-|||.+ +.+.. +.. ..+..+|++.|+..+..|+.+.+... .
T Consensus 43 ~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~-~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 120 (228)
T 3iuy_A 43 PTPIQSQAWPIILQG-IDLIVVAQTGTGKTLS-YLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK 120 (228)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH-HHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH-HHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhccc
Confidence 357999999988765 5999999999999943 33222 221 24667888889999887776555431 1
Q ss_pred CCCCeeecCCCCh-hhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 70 PLLPSEITADLPA-NHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 70 ~~~~~~itge~~~-~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
......+.|..+. ..+..+.....|+++||..|..-+..+.+.+..+..|||||||++.+..-...+.++++..++..-
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~ 200 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCE
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCe
Confidence 2245566666654 445566666799999999999988889999999999999999999877666777788887777888
Q ss_pred EEeecCCCcccccCcchHHHHHHHhccC
Q 005084 149 IRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 149 IkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
+.+|||+... .+++.++...-.
T Consensus 201 ~l~~SAT~~~------~~~~~~~~~l~~ 222 (228)
T 3iuy_A 201 TVMTSATWPD------TVRQLALSYLKD 222 (228)
T ss_dssp EEEEESCCCH------HHHHHHHTTCSS
T ss_pred EEEEEeeCCH------HHHHHHHHHCCC
Confidence 9999999763 355666544433
No 16
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=9.2e-11 Score=139.48 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHh---cCCCCeEEEecCCCCHHHHHHHHHH-Hh--cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCee
Q 005084 2 VLEFHQHIIAELL---QEPNGGLVILSSGLSLPKLIASVLL-LH--SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l---~~~~d~LvVL~tGLG~~~Iva~ll~-~y--~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~ 75 (715)
|.+||++.+.-++ ..+.+|+++.++|||||.++..++. +. ....+-+||+.|.....++..++-.-.+...+.+
T Consensus 237 Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~ 316 (800)
T 3mwy_W 237 LRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCIC 316 (800)
T ss_dssp CCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEE
T ss_pred cCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEE
Confidence 5689999997554 4556999999999999966656554 22 2334556777777776666555443322234555
Q ss_pred ecCCCChhhHHH---hhc----------CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCCh-HHHHHHHHH
Q 005084 76 ITADLPANHRHT---LYS----------SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENST-ETFICRIIK 141 (715)
Q Consensus 76 itge~~~~~R~~---lY~----------~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~-eaFI~rlyr 141 (715)
.+|.....+... +|. ...|++.|+.++..|.-. +..-.+..|||||||++.+..+ ..-+++.+
T Consensus 317 ~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l- 393 (800)
T 3mwy_W 317 YMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAESSLYESLNSF- 393 (800)
T ss_dssp CCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSSHHHHHHTTS-
T ss_pred EeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchhHHHHHHHHh-
Confidence 666554333222 222 345999999999987432 2334688999999999976333 33333322
Q ss_pred hcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEe----------------------------ccCCchhhhhhhc
Q 005084 142 SLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL----------------------------WPRFQVNVSEELE 193 (715)
Q Consensus 142 ~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l----------------------------~PRf~~~V~~~l~ 193 (715)
+..+..++|++|-. ....-+-..++-|.-..... .-|...+|...|
T Consensus 394 ---~~~~rl~LTgTPiq--N~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L- 467 (800)
T 3mwy_W 394 ---KVANRMLITGTPLQ--NNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL- 467 (800)
T ss_dssp ---EEEEEEEECSCCCS--SCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS-
T ss_pred ---hhccEEEeeCCcCC--CCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc-
Confidence 45667899999953 23444444444443322211 113334444444
Q ss_pred cCCCeEEEEEecCCccHHHHHHHHH
Q 005084 194 REPPVVVDVRVPMSKYMGGIQKAIL 218 (715)
Q Consensus 194 ~~~~~V~Ei~V~lt~~m~~Iq~~l~ 218 (715)
-+.....+.|+||+.-+.+...++
T Consensus 468 -P~k~~~~v~v~ls~~q~~~Y~~i~ 491 (800)
T 3mwy_W 468 -PSKTERILRVELSDVQTEYYKNIL 491 (800)
T ss_dssp -CCEEEEEEEECCCHHHHHHHHHHH
T ss_pred -CCcEEEEEEeCCCHHHHHHHHHHH
Confidence 334566678888887776655543
No 17
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.27 E-value=6.2e-11 Score=119.27 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-----CCCCEEEEecCCHhHHHHHHHHhCCCC---CC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-----PSQGTLLLLSSSPNLKSQIIHYLAPNA---PL 71 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-----~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~ 71 (715)
+-+||.+++..++.. +|.+++.|||.|||.+....+. ++. ..+..+|++.|+..+..|+.+.+.... ..
T Consensus 48 ~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 48 VTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 357999999998865 5999999999999954333222 322 235678888899888877655543211 12
Q ss_pred CCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcC-CCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 72 LPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQ-RLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 72 ~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~-ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
....++|..+..+....+....|+++||..|..-+..+ .+....+..|||||||++.+..-...+.++++.-.+...+.
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l 206 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 206 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEE
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEE
Confidence 45667888776666666678899999999997666554 57889999999999999987655666777777766677799
Q ss_pred eecCCCcccccCcchHHHHHHH
Q 005084 151 AFSDKPTAMVSGFAKTERIMKS 172 (715)
Q Consensus 151 AfSdsP~sf~~g~~~l~~vmk~ 172 (715)
+|||++.. .++++.+.
T Consensus 207 ~~SAT~~~------~~~~~~~~ 222 (236)
T 2pl3_A 207 LFSATQTK------SVKDLARL 222 (236)
T ss_dssp EEESSCCH------HHHHHHHH
T ss_pred EEEeeCCH------HHHHHHHH
Confidence 99999874 35555554
No 18
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.24 E-value=1.1e-10 Score=118.35 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=123.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc------CCCCEEEEecCCHhHHHHHHHHhCCC---CC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS------PSQGTLLLLSSSPNLKSQIIHYLAPN---AP 70 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~------~~~~lVlvl~~t~~~~~~i~~~L~~~---~~ 70 (715)
+-+||.+.+..++.. .|.+++.|||-|||.+....+. +.. ..+..+|++.|+..+..|+.+.+... ..
T Consensus 52 ~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 130 (242)
T 3fe2_A 52 PTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR 130 (242)
T ss_dssp CCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 357999999998875 5999999999999954332222 222 23567899999999887765444321 11
Q ss_pred CCCeeecCCCChhhH-HHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccE
Q 005084 71 LLPSEITADLPANHR-HTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYI 149 (715)
Q Consensus 71 ~~~~~itge~~~~~R-~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfI 149 (715)
.....+.|..+..++ ..+.....|++.||..|..-+..+.+.+..+..|||||||++.+..-...+.++++.-++..-+
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 210 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 210 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEE
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceE
Confidence 245667777776554 4445556899999999988888899999999999999999998866677777888777777889
Q ss_pred EeecCCCcccccCcchHHHHHHHhc
Q 005084 150 RAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 150 kAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
.+|||++.. .+++.++...
T Consensus 211 ~~~SAT~~~------~~~~~~~~~l 229 (242)
T 3fe2_A 211 LMWSATWPK------EVRQLAEDFL 229 (242)
T ss_dssp EEEESCCCH------HHHHHHHHHC
T ss_pred EEEEeecCH------HHHHHHHHHC
Confidence 999999763 3666665544
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.23 E-value=2.6e-10 Score=121.96 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCC----CCCCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAP----NAPLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~----~~~~~~~ 74 (715)
+-+||++++..++.. +|.||+.|||.|||.+....+. +.. ..+..+|++.|+..+..|+.+.+.. .+...+.
T Consensus 31 ~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 31 PSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 109 (391)
T ss_dssp CCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred CCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 468999999998874 5999999999999944333322 222 2355788888998887775444322 1123567
Q ss_pred eecCCCChhhHHHhhcCC--CEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCCh-HHHHHHHHHhcCcCccEEe
Q 005084 75 EITADLPANHRHTLYSSG--QIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENST-ETFICRIIKSLNREAYIRA 151 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~g--gV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~-eaFI~rlyr~~nk~gfIkA 151 (715)
.++|+.+..++...+..+ .|+++||..|...+..+.+.+..+..|||||||++.+... ...+.++++..++..-+.+
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~ 189 (391)
T 1xti_A 110 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189 (391)
T ss_dssp EECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEE
Confidence 788888877766666554 8999999999999999999999999999999999987533 3344556666666788999
Q ss_pred ecCCCcccccCcchHHHHHHHhccCe
Q 005084 152 FSDKPTAMVSGFAKTERIMKSLFIRK 177 (715)
Q Consensus 152 fSdsP~sf~~g~~~l~~vmk~L~I~~ 177 (715)
||++|.. .+...++.+.-..
T Consensus 190 ~SAT~~~------~~~~~~~~~~~~~ 209 (391)
T 1xti_A 190 FSATLSK------EIRPVCRKFMQDP 209 (391)
T ss_dssp EESSCCS------THHHHHHHHCSSC
T ss_pred EEeeCCH------HHHHHHHHHcCCC
Confidence 9999974 2445555544433
No 20
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.23 E-value=4.5e-11 Score=119.14 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCC----CC---CC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAP----NA---PL 71 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~----~~---~~ 71 (715)
+-+||++++..++.. .|.+++.|||-|||.+....+. +.. ..+..++++.|+..+..|+.+.+.. .. ..
T Consensus 27 ~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 27 PTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp CCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 357999999998875 4999999999999954333322 222 2356788888998887776544321 11 12
Q ss_pred CCeeecCCCChhhHH-HhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 72 LPSEITADLPANHRH-TLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 72 ~~~~itge~~~~~R~-~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
....+.|..+..+.. .+.....|++.||..|..-+..+.+....+..|||||||++.+..-...+.+++..-++..-+.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l 185 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQML 185 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEE
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEE
Confidence 344566666543332 2333457999999999988888888999999999999999987666777777877777777899
Q ss_pred eecCCCcccccCcchHHHHHHHhcc
Q 005084 151 AFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 151 AfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
+|||++.. .+.+.++.+.-
T Consensus 186 ~~SAT~~~------~~~~~~~~~~~ 204 (219)
T 1q0u_A 186 VFSATIPE------KLKPFLKKYME 204 (219)
T ss_dssp EEESCCCG------GGHHHHHHHCS
T ss_pred EEecCCCH------HHHHHHHHHcC
Confidence 99999863 35566665443
No 21
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=121.90 Aligned_cols=153 Identities=15% Similarity=0.151 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-H-hc----CCCCEEEEecCCHhHHHH-HHHHhCCC--CCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-L-HS----PSQGTLLLLSSSPNLKSQ-IIHYLAPN--APLL 72 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~-y~----~~~~lVlvl~~t~~~~~~-i~~~L~~~--~~~~ 72 (715)
+-+||++++..++.. .+++++.|||.|||.++...+. . .. ..+..+|++.|+..+..| +.+.+... ....
T Consensus 34 l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~ 112 (216)
T 3b6e_A 34 LRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 112 (216)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSC
T ss_pred chHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCce
Confidence 458999999998864 4999999999999965554444 1 11 225567777788777655 54433221 1124
Q ss_pred CeeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCC------CCCCCeeEEEEecccccCCCChHHHHHHHHHhcC-
Q 005084 73 PSEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQR------LPTSNLAGLIILNTHALTENSTETFICRIIKSLN- 144 (715)
Q Consensus 73 ~~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~r------i~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n- 144 (715)
+..++|+.... ....+.....|+++||+.|...+..+. +....+..|||||||++.....+.-+++.|....
T Consensus 113 v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~ 192 (216)
T 3b6e_A 113 VIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKL 192 (216)
T ss_dssp EEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHH
T ss_pred EEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhc
Confidence 55667776543 334556678999999999999888764 7789999999999999987666666655543322
Q ss_pred -------------cCccEEeecCC
Q 005084 145 -------------REAYIRAFSDK 155 (715)
Q Consensus 145 -------------k~gfIkAfSds 155 (715)
+.+.|.+|||+
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 193 KNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHTTCCCCCCCEEEEEECC
T ss_pred ccccccccccCCCCcceEEEeecC
Confidence 56889999986
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.22 E-value=1.2e-10 Score=121.55 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=117.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCC---CCCCCCeeecC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAP---NAPLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~---~~~~~~~~itg 78 (715)
+-+||++++..++.. ++.+|++|||.|||.++. +..+.. +..++++.|+..+..++.+.+.. .....+..+.|
T Consensus 17 l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~-~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 17 FTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYA-IPILEL--GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHH-HHHHHH--TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred CCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHH-HHHHhh--cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 458999999998864 599999999999994443 333332 55678888888887765554432 11234667788
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
+.+..++...+....|+++||..|..-+..+.+++..+..|||||||++.+......+..++........+..||++|..
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred CcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCH
Confidence 88887777778889999999999998888888999999999999999997766666666677766666778889999963
No 23
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.22 E-value=1.2e-10 Score=117.83 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~~ 75 (715)
+-+||++.+..++.. .|.|++.|||-|||.+.+..+. +.. ..+..+|++.|+..+..|+.+.+.... ......
T Consensus 53 ~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 131 (237)
T 3bor_A 53 PSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA 131 (237)
T ss_dssp CCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEE
Confidence 458999999998875 5999999999999954333332 211 245678888899888877655543211 123445
Q ss_pred ecCCCCh-hhHHHhhcC-CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 76 ITADLPA-NHRHTLYSS-GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 76 itge~~~-~~R~~lY~~-ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
+.|.... .++..+... ..|++.||..|..-+..+.+.+..+..|||||||++....-...+.++++..++...+.+||
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~S 211 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 211 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEC
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEE
Confidence 5565543 333444433 58999999999888888889999999999999999977656667778888888888899999
Q ss_pred CCCcccccCcchHHHHHHHhc
Q 005084 154 DKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~ 174 (715)
|++.. .+++.++.+.
T Consensus 212 AT~~~------~~~~~~~~~l 226 (237)
T 3bor_A 212 ATMPT------DVLEVTKKFM 226 (237)
T ss_dssp SSCCH------HHHHHHHHHC
T ss_pred EecCH------HHHHHHHHHC
Confidence 99974 3556555443
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.20 E-value=1.4e-10 Score=124.01 Aligned_cols=156 Identities=14% Similarity=0.139 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCC---CCCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAP---NAPLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~---~~~~~~~~ 75 (715)
+-+||++.+..++.. .|.|++.|||.|||.+....+. +.. ..+..+|++.|+..+..|+.+.+.. .....+..
T Consensus 44 ~~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 122 (394)
T 1fuu_A 44 PSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 122 (394)
T ss_dssp CCHHHHHHHHHHHHT-CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 458999999998875 4999999999999954332222 222 3456888888998888776554422 11234567
Q ss_pred ecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCC
Q 005084 76 ITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 76 itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
++|..+..++...+....|+++||..|...+..+.+....+..|||||||++.+......+.+++...++...+.++||+
T Consensus 123 ~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp ECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 78888887777777789999999999999999999999999999999999987766666677777777777889999999
Q ss_pred Ccc
Q 005084 156 PTA 158 (715)
Q Consensus 156 P~s 158 (715)
|..
T Consensus 203 ~~~ 205 (394)
T 1fuu_A 203 MPN 205 (394)
T ss_dssp CCH
T ss_pred cCH
Confidence 974
No 25
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.18 E-value=3.6e-10 Score=115.63 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=120.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hh-cCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LH-SPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~ 75 (715)
+-+||++++..++.. +|.+++.|||-|||.+....+. +. .+.+..+|++.|+..+..|+.+.+... .......
T Consensus 66 ~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 66 PTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 357999999998875 5999999999999954333332 33 234567888999988887765444221 1124566
Q ss_pred ecCCCChh-hHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 76 ITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 76 itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
+.|..... ....+.....|++.||..|..-+.. +.+....+..|||||||++.+..-...+.++++.-.+...+.+||
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~S 224 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFS 224 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEe
Confidence 77776653 4445566678999999999776665 567899999999999999987666666777777766677899999
Q ss_pred CCCcccccCcchHHHHHHHhc
Q 005084 154 DKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 154 dsP~sf~~g~~~l~~vmk~L~ 174 (715)
|++.. .+++.++...
T Consensus 225 AT~~~------~v~~~~~~~l 239 (249)
T 3ber_A 225 ATMTK------KVQKLQRAAL 239 (249)
T ss_dssp SSCCH------HHHHHHHHHC
T ss_pred ccCCH------HHHHHHHHHC
Confidence 99974 3566555443
No 26
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.15 E-value=1.1e-09 Score=111.37 Aligned_cols=172 Identities=12% Similarity=0.161 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc----------CCCCEEEEecCCHhHHHHHHHHhCCC-
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS----------PSQGTLLLLSSSPNLKSQIIHYLAPN- 68 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~----------~~~~lVlvl~~t~~~~~~i~~~L~~~- 68 (715)
+-+||.+.+..++.. .|.+++.|||-|||.+....+. +.. ..+..+|++.|+..+..|+.+.+...
T Consensus 46 ~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 46 PTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 458999999998875 4999999999999954333222 222 12357888889988887765544321
Q ss_pred --CCCCCeeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcC-
Q 005084 69 --APLLPSEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN- 144 (715)
Q Consensus 69 --~~~~~~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n- 144 (715)
.......+.|..+.. ++..+.....|++.||..|..-+..+.+++..+..|||||||++.+..-...+.+++...+
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 204 (253)
T 1wrb_A 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM 204 (253)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCC
T ss_pred ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccC
Confidence 112345566776544 4455555668999999999888888889999999999999999877655555666665322
Q ss_pred c---CccEEeecCCCcccccCcchHHHHHHHhccCeeEe
Q 005084 145 R---EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180 (715)
Q Consensus 145 k---~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l 180 (715)
+ ..-+.+|||+|.. .+++.++...-.-+.+
T Consensus 205 ~~~~~~q~l~~SAT~~~------~~~~~~~~~l~~~~~i 237 (253)
T 1wrb_A 205 PSGINRQTLMFSATFPK------EIQKLAADFLYNYIFM 237 (253)
T ss_dssp CCGGGCEEEEEESSCCH------HHHHHHHHHCSSCEEE
T ss_pred CCCCCcEEEEEEEeCCH------HHHHHHHHHcCCCEEE
Confidence 1 4459999999974 3666666554333333
No 27
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.13 E-value=2.9e-10 Score=127.26 Aligned_cols=194 Identities=11% Similarity=0.085 Sum_probs=125.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLL-HSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~-y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~it 77 (715)
+-+||.+.+..++.. .|+||+.+||.|||.+++..+.. ....++.||++.|+..+..|..+.+... ....+..++
T Consensus 114 l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 114 PHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 458999999998875 49999999999999665444442 2233458888888888877665555431 111356677
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
|..+..++ ++....|++.||+.|..+ +.....++..|||||||++.... ..++.+.-.+...+.+||++|.
T Consensus 193 ~~~~~~~~--~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~~~----~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 193 GGASKDDK--YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGKS----ISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGCCTTGG--GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCHHH----HHHHGGGCTTCCEEEEEESCGG
T ss_pred cCCccccc--cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCccc----HHHHHHhcccCcEEEEEEeCCC
Confidence 77666554 788899999999987665 33556789999999999987632 3344444456778999999996
Q ss_pred ccccCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHH
Q 005084 158 AMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMG 211 (715)
Q Consensus 158 sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~ 211 (715)
. +...+...+..++- .++..+.-+..-..++ .+..+..+.+.+++...
T Consensus 264 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~ 311 (510)
T 2oca_A 264 D---GKANIMQYVGMFGE-IFKPVTTSKLMEDGQV--TELKINSIFLRYPDEFT 311 (510)
T ss_dssp G---CSSCHHHHHHHHCS-EECCCCCC-----------CCEEEEEEEECCHHHH
T ss_pred C---CcccHHHhHHhhCC-eEEeeCHHHHhhCCcC--CCceEEEEeecCChHHh
Confidence 4 44444444444433 2222222222223344 55788888888887643
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.11 E-value=5.5e-10 Score=118.94 Aligned_cols=154 Identities=12% Similarity=0.164 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH--Hh-cCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCe
Q 005084 2 VLEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL--LH-SPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~--~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~ 74 (715)
+-+||++++..++.. +.|.||+.|||.|||.++...+. +. ...+..+|++.|+..+..|+.+.+... ......
T Consensus 28 ~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 107 (395)
T 3pey_A 28 PSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQ 107 (395)
T ss_dssp CCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEE
Confidence 457999999998874 14999999999999954443333 22 234668888999998887765554321 111233
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC-ChHHHHHHHHHhcCcCccEEeec
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN-STETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~-~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
.+.+...... ......|+++||..|...+..+.+.+..+..|||||||++... .....+.++.+..++..-+.+||
T Consensus 108 ~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 108 LIVPDSFEKN---KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp EESTTSSCTT---SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred EEecCchhhh---ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 4444432221 2346889999999999988899999999999999999999873 34445556666666778899999
Q ss_pred CCCcc
Q 005084 154 DKPTA 158 (715)
Q Consensus 154 dsP~s 158 (715)
|+|..
T Consensus 185 AT~~~ 189 (395)
T 3pey_A 185 ATFAD 189 (395)
T ss_dssp SCCCH
T ss_pred ecCCH
Confidence 99963
No 29
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.10 E-value=1.6e-10 Score=119.91 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhCCCCC---CCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLAPNAP---LLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~~---~~~~~it 77 (715)
+-+||.+.+..++.. .++||+.|||.|||.+++.++..+ ...++.+|++.|+..+..|..+.+..... ..+..+.
T Consensus 114 l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred ccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 357999999998765 389999999999996665554422 22245788888998887766555533111 1234455
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
+.....+ ..+..+.|++.||+.+..+ +......+..|||||||++.+. .+. .+.+.-.+...+.+||++|.
T Consensus 193 ~~~~~~~--~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~-~~~---~il~~~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 193 GGASKDD--KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK-SIS---SIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp TTCSSTT--CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH-HHH---HHTTTCTTCCEEEEECSSCC
T ss_pred CCCcchh--hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc-cHH---HHHHHhhcCCeEEEEeCCCC
Confidence 5543322 5567899999999988654 2234678899999999999864 222 33333335788999999997
Q ss_pred c
Q 005084 158 A 158 (715)
Q Consensus 158 s 158 (715)
.
T Consensus 264 ~ 264 (282)
T 1rif_A 264 D 264 (282)
T ss_dssp T
T ss_pred C
Confidence 5
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.09 E-value=1.6e-09 Score=116.97 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-Hh--cCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LH--SPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y--~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~ 75 (715)
+-+||++.+..++.. +|.|++.|||.|||.+....+. .. ...+..+|++.|+..+..|+.+.+... ....+..
T Consensus 60 ~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEE
Confidence 458999999998874 4999999999999954443333 21 134678899999998887766544321 1123456
Q ss_pred ecCCCChhhHH-HhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecC
Q 005084 76 ITADLPANHRH-TLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 76 itge~~~~~R~-~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSd 154 (715)
+.|.....+.. .+.....|++.||..|..-+..+.+....+..|||||||++.+......+.++++...+...+.+||+
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 218 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISA 218 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEES
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEc
Confidence 67776655443 34445689999999999888888999999999999999999887767777778877777788999999
Q ss_pred CCcc
Q 005084 155 KPTA 158 (715)
Q Consensus 155 sP~s 158 (715)
+|..
T Consensus 219 T~~~ 222 (410)
T 2j0s_A 219 TLPH 222 (410)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 9853
No 31
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.2e-09 Score=112.70 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hhc-----CCCCEEEEecCCHhHHHHHHHHhCCC---CC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHS-----PSQGTLLLLSSSPNLKSQIIHYLAPN---AP 70 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~-----~~~~lVlvl~~t~~~~~~i~~~L~~~---~~ 70 (715)
+-++|.+++..++.. +|.|++.|||-|||. ++.+.. +.. ..+..++++.|+..++.|+.+.+... ..
T Consensus 77 ~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~-~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 154 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEG-RDLLAAAKTGSGKTL-AFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 154 (262)
T ss_dssp CCHHHHHHHHHHHHT-CCCEECCCTTSCHHH-HHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHhCC-CcEEEEccCCCCchH-HHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 347999999998875 599999999999994 333322 221 23667888999998887765544321 11
Q ss_pred CCCeeecCCCChh-hHHHhhcCCCEEEECchHHHHHhhcC-CCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 71 LLPSEITADLPAN-HRHTLYSSGQIFFVTPRILIVDLLTQ-RLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 71 ~~~~~itge~~~~-~R~~lY~~ggV~fvTprIL~~DLLs~-ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
..+..++|..... ....+.....|++.||..|..-+..+ .+.+..+..|||||||++.+..-...+.++.+...+..-
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q 234 (262)
T 3ly5_A 155 HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 234 (262)
T ss_dssp SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSE
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCe
Confidence 2455677776654 44455566789999999997766665 478999999999999999886666677777777777788
Q ss_pred EEeecCCCcc
Q 005084 149 IRAFSDKPTA 158 (715)
Q Consensus 149 IkAfSdsP~s 158 (715)
+.+|||++..
T Consensus 235 ~l~~SAT~~~ 244 (262)
T 3ly5_A 235 TMLFSATQTR 244 (262)
T ss_dssp EEEECSSCCH
T ss_pred EEEEEecCCH
Confidence 9999999974
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.07 E-value=7e-10 Score=119.50 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=116.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-H-hc-CCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-L-HS-PSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~-y~-~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~ 75 (715)
+-+||++.+..++.. +|.+|+.|||.|||.++...+. . .. ..+..+|++.|+..+..|+.+.+... .......
T Consensus 63 ~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 141 (414)
T 3eiq_A 63 PSAIQQRAILPCIKG-YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA 141 (414)
T ss_dssp CCHHHHHHHHHHHTT-CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE
T ss_pred CCHHHHHHhHHHhCC-CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEE
Confidence 357999999998875 5999999999999955443333 2 21 24667888999988887765544321 1123445
Q ss_pred ecCCCChhhHHHhh--cCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeec
Q 005084 76 ITADLPANHRHTLY--SSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFS 153 (715)
Q Consensus 76 itge~~~~~R~~lY--~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfS 153 (715)
+.|......+.... ....|+++||..|...+..+.+....+..|||||||++........+..+++..++...+.+||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 221 (414)
T 3eiq_A 142 CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 221 (414)
T ss_dssp CCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEEC
T ss_pred EECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEE
Confidence 56665544433322 4568999999999999999999999999999999999887777777888888888888899999
Q ss_pred CCCc
Q 005084 154 DKPT 157 (715)
Q Consensus 154 dsP~ 157 (715)
|+|.
T Consensus 222 AT~~ 225 (414)
T 3eiq_A 222 ATMP 225 (414)
T ss_dssp SCCC
T ss_pred EecC
Confidence 9995
No 33
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.06 E-value=1.8e-08 Score=117.07 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHh--------cCCCCeEEEecCCCCHHHHHHHHHH-Hh-cC-----CCCEEEEecCCHhHHHHHHHHhC
Q 005084 2 VLEFHQHIIAELL--------QEPNGGLVILSSGLSLPKLIASVLL-LH-SP-----SQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 2 lL~YQ~~I~~~~l--------~~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~-----~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
|.+||++.+.-++ ..+.+||+..++|||||..+..++. +. .. ..+.+||+.|+....++..+.-.
T Consensus 56 LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~ 135 (644)
T 1z3i_X 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGK 135 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHHH
Confidence 6799999998764 3444789999999999966666665 32 11 23457888887666665443322
Q ss_pred CCC-CCCCeeecCCCChhhHH---Hhhc------CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHH-
Q 005084 67 PNA-PLLPSEITADLPANHRH---TLYS------SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETF- 135 (715)
Q Consensus 67 ~~~-~~~~~~itge~~~~~R~---~lY~------~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaF- 135 (715)
-.+ ...+..+.+......+. ..+. ...|+++|...+..|. ..+....+..||+||||++....+..+
T Consensus 136 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~~~~~~ 213 (644)
T 1z3i_X 136 WLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (644)
T ss_dssp HHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChhhHHHH
Confidence 111 11234444433222122 2222 2469999999999874 556667889999999999986443222
Q ss_pred HHHHHHhcCcCccEEeecCCCcc
Q 005084 136 ICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 136 I~rlyr~~nk~gfIkAfSdsP~s 158 (715)
.++.+ +..+..++|++|..
T Consensus 214 al~~l----~~~~rl~LTgTPiq 232 (644)
T 1z3i_X 214 ALNSM----NAQRRVLISGTPIQ 232 (644)
T ss_dssp HHHHH----CCSEEEEECSSCSG
T ss_pred HHHhc----ccCcEEEEecCccc
Confidence 22223 34578999999953
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.05 E-value=2.3e-09 Score=123.44 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCCh
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPA 82 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~ 82 (715)
-+||++++..++.. +|+||++|||-||| +++.+..+.. ++.+|++.|+..++++..+.+...+ .....++|..+.
T Consensus 46 rp~Q~~~i~~il~g-~d~lv~~pTGsGKT-l~~~lpal~~--~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~ 120 (591)
T 2v1x_A 46 RPLQLETINVTMAG-KEVFLVMPTGGGKS-LCYQLPALCS--DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSK 120 (591)
T ss_dssp CTTHHHHHHHHHTT-CCEEEECCTTSCTT-HHHHHHHHTS--SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCH
T ss_pred CHHHHHHHHHHHcC-CCEEEEECCCChHH-HHHHHHHHHc--CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCH
Confidence 47999999998884 59999999999999 5555555543 4689999999988876555554321 246778899888
Q ss_pred hhHHHhhc-------CCCEEEECchHHH-----HHhhcCCCCCCCeeEEEEecccccCCCC-----hHHHHHHHHHhcCc
Q 005084 83 NHRHTLYS-------SGQIFFVTPRILI-----VDLLTQRLPTSNLAGLIILNTHALTENS-----TETFICRIIKSLNR 145 (715)
Q Consensus 83 ~~R~~lY~-------~ggV~fvTprIL~-----~DLLs~ri~~~~ItgiVV~~AHr~~~~~-----~eaFI~rlyr~~nk 145 (715)
.++...|. ...|+++||..|. .++|.+.+....++.|||||||.+.... .|.. +..++...+
T Consensus 121 ~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~-l~~l~~~~~ 199 (591)
T 2v1x_A 121 EHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA-LGILKRQFP 199 (591)
T ss_dssp HHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG-GGHHHHHCT
T ss_pred HHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH-HHHHHHhCC
Confidence 87776653 4679999998764 5667777778899999999999986521 1222 224444455
Q ss_pred CccEEeecCCCcccccCcchHHHHHHHhccCeeEe
Q 005084 146 EAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHL 180 (715)
Q Consensus 146 ~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l 180 (715)
..-+.||||+|.. .-.+.+.+.|++.....
T Consensus 200 ~~~ii~lSAT~~~-----~v~~~i~~~l~~~~~~~ 229 (591)
T 2v1x_A 200 NASLIGLTATATN-----HVLTDAQKILCIEKCFT 229 (591)
T ss_dssp TSEEEEEESSCCH-----HHHHHHHHHTTCCSCEE
T ss_pred CCcEEEEecCCCH-----HHHHHHHHHhCCCCcEE
Confidence 5668899999975 33456677777765443
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.04 E-value=3.8e-09 Score=113.51 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCee
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSE 75 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~ 75 (715)
+-+||++++..++.. +|.+++.|||.|||.++...+. +.. ..+..+|++.|+..+..|+.+.+... ....+..
T Consensus 44 ~~~~Q~~~i~~i~~~-~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITG-RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHT-CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhcC-CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 458999999998875 4899999999999954333332 222 23557888888888887655444321 1123556
Q ss_pred ecCCCChhh-HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecC
Q 005084 76 ITADLPANH-RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 76 itge~~~~~-R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSd 154 (715)
++|.....+ ...+.....|+++||..|...+..+......+..|||||||++....-...+.+++....+...+.+||+
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 202 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSA 202 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEES
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEe
Confidence 677765533 3455567789999999999888888899999999999999998876544445555555556678999999
Q ss_pred CCcc
Q 005084 155 KPTA 158 (715)
Q Consensus 155 sP~s 158 (715)
++..
T Consensus 203 T~~~ 206 (400)
T 1s2m_A 203 TFPL 206 (400)
T ss_dssp CCCH
T ss_pred cCCH
Confidence 9863
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.04 E-value=9.5e-10 Score=123.98 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCCCC-CCCCeeec
Q 005084 3 LEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAPNA-PLLPSEIT 77 (715)
Q Consensus 3 L~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~~~-~~~~~~it 77 (715)
-+||++.+..++.. ++|.||++|||.|||.+....+. +.. ..++.+|++.|+..+..|+.+.+.... ........
T Consensus 143 ~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~ 222 (508)
T 3fho_A 143 XKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAF 222 (508)
T ss_dssp CCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEE
Confidence 46899999988874 35999999999999955333332 222 235588999999988877655443211 11122111
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC-ChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN-STETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~-~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
......+...+....|++.||..|...+..+.+++..+..|||||||++... .....+.++++...+..-+.++||+|
T Consensus 223 -~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 223 -GIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp -----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred -EeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 2223344455668899999999999999999999999999999999999873 33444455666566677799999999
Q ss_pred cc
Q 005084 157 TA 158 (715)
Q Consensus 157 ~s 158 (715)
..
T Consensus 302 ~~ 303 (508)
T 3fho_A 302 SE 303 (508)
T ss_dssp ST
T ss_pred CH
Confidence 63
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.98 E-value=3.3e-09 Score=120.30 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCCh
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPA 82 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~ 82 (715)
-++|.+++..++.. +|+||++|||-||| +++.+-.+.. ++.++++.|+..+..+..+.+...+ .....+++..+.
T Consensus 27 r~~Q~~~i~~il~g-~d~lv~apTGsGKT-l~~~lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~ 101 (523)
T 1oyw_A 27 RPGQEEIIDTVLSG-RDCLVVMPTGGGKS-LCYQIPALLL--NGLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTR 101 (523)
T ss_dssp CTTHHHHHHHHHTT-CCEEEECSCHHHHH-HHHHHHHHHS--SSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCH
T ss_pred CHHHHHHHHHHHcC-CCEEEECCCCcHHH-HHHHHHHHHh--CCCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCH
Confidence 47899999998875 49999999999999 5555544443 4678999999988876655554422 246678888887
Q ss_pred hhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC-----hHHHHHHHHHhcCcCccEEee
Q 005084 83 NHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS-----TETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 83 ~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~-----~eaFI~rlyr~~nk~gfIkAf 152 (715)
.++...+. .-.|+++||..|..+...+.+....+..|||||||.+..-. .|..+.++ ++..+...+.||
T Consensus 102 ~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l-~~~~~~~~~i~l 180 (523)
T 1oyw_A 102 EQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL-RQRFPTLPFMAL 180 (523)
T ss_dssp HHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGH-HHHCTTSCEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHH-HHhCCCCCEEEE
Confidence 76665543 36899999999976665566667899999999999996421 23334333 334445567799
Q ss_pred cCCCcccccCcchHHHHHHHhccCeeE
Q 005084 153 SDKPTAMVSGFAKTERIMKSLFIRKLH 179 (715)
Q Consensus 153 SdsP~sf~~g~~~l~~vmk~L~I~~v~ 179 (715)
||+|.. ...+.+++.|++....
T Consensus 181 SAT~~~-----~~~~~i~~~l~~~~~~ 202 (523)
T 1oyw_A 181 TATADD-----TTRQDIVRLLGLNDPL 202 (523)
T ss_dssp ESCCCH-----HHHHHHHHHHTCCSCE
T ss_pred eCCCCH-----HHHHHHHHHhCCCCCe
Confidence 999985 3456788888876533
No 38
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.96 E-value=3.1e-08 Score=109.22 Aligned_cols=166 Identities=11% Similarity=0.083 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHH-H-Hhc------CCCCEEEEecCCHhHHHHHHHHhCCC---CC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVL-L-LHS------PSQGTLLLLSSSPNLKSQIIHYLAPN---AP 70 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll-~-~y~------~~~~lVlvl~~t~~~~~~i~~~L~~~---~~ 70 (715)
+-++|++.+..++.. .|.+++.+||-|||.+...-+ . +.. ..+..+|++.|+..+..|+.+.+... ..
T Consensus 79 pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 157 (434)
T 2db3_A 79 PTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY 157 (434)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCC
Confidence 347999999988865 599999999999995332212 1 222 12568999999999988775544321 12
Q ss_pred CCCeeecCCCChhh-HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCc
Q 005084 71 LLPSEITADLPANH-RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREA 147 (715)
Q Consensus 71 ~~~~~itge~~~~~-R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~g 147 (715)
..+..+.|..+..+ ...+.....|+++||..|..-+-.+.+.+..+..||+||||++.+..-..-+.++.... .+..
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~ 237 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 237 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSC
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCc
Confidence 24667788876654 44555566899999999988777889999999999999999998876566666666543 4566
Q ss_pred cEEeecCCCcccccCcchHHHHHHHhc
Q 005084 148 YIRAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 148 fIkAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
-+.+|||++.. .+++..+...
T Consensus 238 q~l~~SAT~~~------~~~~~~~~~l 258 (434)
T 2db3_A 238 QTLMFSATFPE------EIQRMAGEFL 258 (434)
T ss_dssp EEEEEESCCCH------HHHHHHHTTC
T ss_pred eEEEEeccCCH------HHHHHHHHhc
Confidence 79999999863 3555555443
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.96 E-value=1.7e-09 Score=117.58 Aligned_cols=152 Identities=9% Similarity=0.092 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhCCC--CCCCCeeecC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLAPN--APLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~--~~~~~~~itg 78 (715)
+-+||++.+..++.. +|.|+++|||-|||. ++.+..++ ...++.+|++.|+..+..|+.+.+... ....+..++|
T Consensus 22 ~~~~Q~~~i~~i~~~-~~~lv~apTGsGKT~-~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g 99 (414)
T 3oiy_A 22 LTGYQRLWAKRIVQG-KSFTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYS 99 (414)
T ss_dssp CCHHHHHHHHHHTTT-CCEECCSCSSSSHHH-HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCT
T ss_pred CCHHHHHHHHHHhcC-CCEEEEeCCCCCHHH-HHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEEC
Confidence 357999999998875 499999999999995 44444332 245778888999998887765554331 1225678889
Q ss_pred CCChhhHH----HhhcC-CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC------------CChH---HHHHH
Q 005084 79 DLPANHRH----TLYSS-GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE------------NSTE---TFICR 138 (715)
Q Consensus 79 e~~~~~R~----~lY~~-ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~------------~~~e---aFI~r 138 (715)
+.+..+|. .+... ..|+++||..|...+- .++...+..|||||||++.. .+.. ..|+.
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~--~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~ 177 (414)
T 3oiy_A 100 SMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE--KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 177 (414)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH--HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH--HhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHH
Confidence 98886553 33333 6999999999975443 38888999999999998752 2222 23333
Q ss_pred HHHh--------cCcCccEEeecCCCc
Q 005084 139 IIKS--------LNREAYIRAFSDKPT 157 (715)
Q Consensus 139 lyr~--------~nk~gfIkAfSdsP~ 157 (715)
.++. .++...+.+|||+|.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 178 TIKQGKIYERPKNLKPGILVVSSATAK 204 (414)
T ss_dssp HHHHTCCCCCCTTCCCCEEEESSCCSS
T ss_pred hcccchhhhhcccCCCceEEEEecCCC
Confidence 3320 115567899999943
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.4e-08 Score=102.63 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=108.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc--CCCCEEEEecCCHhHHHHHHHHhCCCC---CCCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS--PSQGTLLLLSSSPNLKSQIIHYLAPNA---PLLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~--~~~~lVlvl~~t~~~~~~i~~~L~~~~---~~~~~ 74 (715)
+-+||++.+..++.. +|.+++.|||-|||.+....+. +.. ..+..++++.|+..+..|+.+.+.... ...+.
T Consensus 52 ~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHG-RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIH 130 (245)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEE
Confidence 457999999988875 5999999999999954322222 332 235578899999988877655553211 11222
Q ss_pred eecCCCChhhH--HHhhcCCCEEEECchHHHHHhhcC--CCCCCCeeEEEEecccccCCC---ChHHHHHHHHHhc-CcC
Q 005084 75 EITADLPANHR--HTLYSSGQIFFVTPRILIVDLLTQ--RLPTSNLAGLIILNTHALTEN---STETFICRIIKSL-NRE 146 (715)
Q Consensus 75 ~itge~~~~~R--~~lY~~ggV~fvTprIL~~DLLs~--ri~~~~ItgiVV~~AHr~~~~---~~eaFI~rlyr~~-nk~ 146 (715)
.++|......+ ........|++.||..|..-+..+ .+++..+..|||||||++.+. .-...+.++++.. ++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~ 210 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 210 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTT
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCC
Confidence 33332221111 112234579999999998766666 588999999999999999763 2334445555543 345
Q ss_pred ccEEeecCCCcccccCcchHHHHHHHhc
Q 005084 147 AYIRAFSDKPTAMVSGFAKTERIMKSLF 174 (715)
Q Consensus 147 gfIkAfSdsP~sf~~g~~~l~~vmk~L~ 174 (715)
..+.+|||++.. .+++.++...
T Consensus 211 ~~~~~~SAT~~~------~v~~~~~~~l 232 (245)
T 3dkp_A 211 VRRAMFSATFAY------DVEQWCKLNL 232 (245)
T ss_dssp CEEEEEESSCCH------HHHHHHHHHS
T ss_pred cEEEEEeccCCH------HHHHHHHHhC
Confidence 678999999863 4666665443
No 41
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.95 E-value=1.5e-08 Score=108.87 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhCC----CCCCCC
Q 005084 2 VLEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLAP----NAPLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~~----~~~~~~ 73 (715)
+-+||.+.+..++.. +.|.|+++|||.|||.++...+. +.. ..+..+|++.|+..+..|+.+.+.. ......
T Consensus 48 ~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 127 (412)
T 3fht_A 48 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 127 (412)
T ss_dssp CCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceE
Confidence 457999999999874 34999999999999954332222 222 3345788888999888776443322 111233
Q ss_pred eeecCCCChhhHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCccEEe
Q 005084 74 SEITADLPANHRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAYIRA 151 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gfIkA 151 (715)
....+....... ......|+++||..|..-+.. +.+++..+..|||||||++.+ ......+..+.+...+..-+.+
T Consensus 128 ~~~~~~~~~~~~--~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (412)
T 3fht_A 128 AYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLL 205 (412)
T ss_dssp EEECTTCCCCTT--CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEE
T ss_pred EEeecCcchhhh--hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEE
Confidence 344444332221 134568999999999766645 678889999999999999976 3334445566666667778999
Q ss_pred ecCCCcc
Q 005084 152 FSDKPTA 158 (715)
Q Consensus 152 fSdsP~s 158 (715)
|||+|..
T Consensus 206 ~SAT~~~ 212 (412)
T 3fht_A 206 FSATFED 212 (412)
T ss_dssp EESCCCH
T ss_pred EEeecCH
Confidence 9999974
No 42
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.93 E-value=1.6e-09 Score=123.80 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHhc----CCCCeEEEecCCCCHHHHHHHHHH-Hh-cC-------CCCEEEEecCCHhHHHHHH-HHhCC
Q 005084 2 VLEFHQHIIAELLQ----EPNGGLVILSSGLSLPKLIASVLL-LH-SP-------SQGTLLLLSSSPNLKSQII-HYLAP 67 (715)
Q Consensus 2 lL~YQ~~I~~~~l~----~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~-------~~~lVlvl~~t~~~~~~i~-~~L~~ 67 (715)
+-+||.+.+..++. ..+++|+++|||.|||.++..++. +. .. .+..||++.|+..+..|.. +.+..
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~ 258 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTP 258 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTT
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45899999998875 333689999999999976555554 33 22 4577888888888877765 55543
Q ss_pred CCCCCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhh----cCCCCCCCeeEEEEecccccCCC--ChHHHHHHHHH
Q 005084 68 NAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLL----TQRLPTSNLAGLIILNTHALTEN--STETFICRIIK 141 (715)
Q Consensus 68 ~~~~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLL----s~ri~~~~ItgiVV~~AHr~~~~--~~eaFI~rlyr 141 (715)
.. .....+++. ..-..+.|++.||+.|..++- .+.+++..+..|||||||++... ..+.-|++.+.
T Consensus 259 ~~-~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~ 330 (590)
T 3h1t_A 259 FG-DARHKIEGG-------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFE 330 (590)
T ss_dssp TC-SSEEECCC---------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHST
T ss_pred cc-hhhhhhhcc-------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCC
Confidence 21 123333322 223468999999999988753 45678889999999999999764 34445555443
Q ss_pred hcCcCccEEeecCCCcc
Q 005084 142 SLNREAYIRAFSDKPTA 158 (715)
Q Consensus 142 ~~nk~gfIkAfSdsP~s 158 (715)
...+.+||++|..
T Consensus 331 ----~~~~l~lTATP~~ 343 (590)
T 3h1t_A 331 ----PAFQIGMTATPLR 343 (590)
T ss_dssp ----TSEEEEEESSCSC
T ss_pred ----cceEEEecccccc
Confidence 4679999999985
No 43
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.91 E-value=1.6e-08 Score=106.56 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHH-HHHH-Hhc-CCCCEEEEecCCHhHHHHHHHHhCC----CCCCCCe
Q 005084 3 LEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIA-SVLL-LHS-PSQGTLLLLSSSPNLKSQIIHYLAP----NAPLLPS 74 (715)
Q Consensus 3 L~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva-~ll~-~y~-~~~~lVlvl~~t~~~~~~i~~~L~~----~~~~~~~ 74 (715)
-++|...+..++.. +.|.|++.|||-|||.+.. -++. +.. ..+..+|++.|+..+..|+...+.. .....+.
T Consensus 116 t~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~ 195 (300)
T 3fmo_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (300)
T ss_dssp CHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 46899999998874 3599999999999995433 2222 222 2344788899999998876544422 1122344
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCC-CChHHHHHHHHHhcCcCccEEee
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTE-NSTETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~-~~~eaFI~rlyr~~nk~gfIkAf 152 (715)
.+.|......+. .....|++.||..|..-+.. +.+++..+..|||||||++.+ ..-...+.++++..++..-+.+|
T Consensus 196 ~~~~~~~~~~~~--~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 196 YAVRGNKLERGQ--KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp EESTTCCCCTTC--CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EEeCCccHhhhh--cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 555554433222 34567999999998654434 578999999999999999986 45556667777777777889999
Q ss_pred cCCCcccccCcchHHHHHHHh
Q 005084 153 SDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 153 SdsP~sf~~g~~~l~~vmk~L 173 (715)
||++.. .+....+..
T Consensus 274 SAT~~~------~v~~~a~~~ 288 (300)
T 3fmo_B 274 SATFED------SVWKFAQKV 288 (300)
T ss_dssp ESCCCH------HHHHHHHHH
T ss_pred eccCCH------HHHHHHHHH
Confidence 999974 355555443
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.90 E-value=4.6e-09 Score=116.32 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=115.9
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCC-CeeecCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLL-PSEITADL 80 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~-~~~itge~ 80 (715)
+-+||++.+..++.. +++||+++||+|||.+...++... +..+|++.|+..+..|..+.+... ... +.+++|+.
T Consensus 94 l~~~Q~~ai~~i~~~-~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~-~~~~v~~~~g~~ 168 (472)
T 2fwr_A 94 LRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIF-GEEYVGEFSGRI 168 (472)
T ss_dssp BCHHHHHHHHHHTTT-TEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGG-CGGGEEEBSSSC
T ss_pred cCHHHHHHHHHHHhc-CCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhC-CCcceEEECCCc
Confidence 568999999998875 379999999999995544444332 456777888877776666655542 223 56777765
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccc
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV 160 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~ 160 (715)
.. ...|++.|++.+...+-. + .+.+..|||||||++.+.. +.-+++. -+..++.++|++|..-
T Consensus 169 ~~--------~~~Ivv~T~~~l~~~~~~--~-~~~~~liIvDEaH~~~~~~-~~~~~~~----~~~~~~l~lSATp~~~- 231 (472)
T 2fwr_A 169 KE--------LKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAES-YVQIAQM----SIAPFRLGLTATFERE- 231 (472)
T ss_dssp BC--------CCSEEEEEHHHHHHTHHH--H-TTTCSEEEEETGGGTTSTT-THHHHHT----CCCSEEEEEESCCCCT-
T ss_pred CC--------cCCEEEEEcHHHHHHHHH--h-cCCCCEEEEECCcCCCChH-HHHHHHh----cCCCeEEEEecCccCC-
Confidence 43 468999999998776531 1 1458899999999997643 3334433 2467899999999842
Q ss_pred cCcchHHHHHHHhccCeeEeccCCchhhhhhhccCCCeEEEEEecCCccHHHH
Q 005084 161 SGFAKTERIMKSLFIRKLHLWPRFQVNVSEELEREPPVVVDVRVPMSKYMGGI 213 (715)
Q Consensus 161 ~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~~~~~V~Ei~V~lt~~m~~I 213 (715)
......+..+.=..++-+ ........++ .++.+..+.+++++.-...
T Consensus 232 ---~~~~~~l~~~~~~~~~~~-~~~~l~~~~l--~~~~~~~~~~~~~~~~~~~ 278 (472)
T 2fwr_A 232 ---DGRHEILKEVVGGKVFEL-FPDSLAGKHL--AKYTIKRIFVPLAEDERVE 278 (472)
T ss_dssp ---TSGGGSHHHHTCCEEEEC-CHHHHTSCCC--CSEEECCEEECCCHHHHHH
T ss_pred ---CCHHHHHHHHhCCeEeec-CHHHHhcCcC--CCeEEEEEEcCCCHHHHHH
Confidence 111222333322222222 1111122223 3456677888888875443
No 45
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.90 E-value=3.7e-08 Score=106.27 Aligned_cols=170 Identities=13% Similarity=0.101 Sum_probs=116.8
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHH-HH-Hhc-C------------------CCCEEEEecCCHhHHHH
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASV-LL-LHS-P------------------SQGTLLLLSSSPNLKSQ 60 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~l-l~-~y~-~------------------~~~lVlvl~~t~~~~~~ 60 (715)
+-++|++++..++.. +|.+++.|||.|||.+.... +. ++. . .+..+|++.|+..+..|
T Consensus 38 ~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 38 PTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 347899999887764 59999999999999533322 21 221 1 12568888999888877
Q ss_pred HHHHhCCC---CCCCCeeecCCCChhh-HHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHH
Q 005084 61 IIHYLAPN---APLLPSEITADLPANH-RHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFI 136 (715)
Q Consensus 61 i~~~L~~~---~~~~~~~itge~~~~~-R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI 136 (715)
+.+.+... ....+..+.|..+..+ ...+.....|+++||..|..-+..+.+....+..|||||||++.+..-...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 196 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 196 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHH
Confidence 65544321 1124556777776544 4455566789999999999999999999999999999999998876544555
Q ss_pred HHHHHhcC----cCccEEeecCCCcccccCcchHHHHHHHhccCee
Q 005084 137 CRIIKSLN----REAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKL 178 (715)
Q Consensus 137 ~rlyr~~n----k~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v 178 (715)
.++..... ....+.+|||+|.. .+...++.+.-..+
T Consensus 197 ~~i~~~~~~~~~~~~~~i~~SAT~~~------~~~~~~~~~~~~~~ 236 (417)
T 2i4i_A 197 RRIVEQDTMPPKGVRHTMMFSATFPK------EIQMLARDFLDEYI 236 (417)
T ss_dssp HHHHTSSSCCCBTTBEEEEEESCCCH------HHHHHHHHHCSSCE
T ss_pred HHHHHhccCCCcCCcEEEEEEEeCCH------HHHHHHHHHcCCCE
Confidence 55554321 13568999999963 34555555443333
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1e-08 Score=124.90 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=112.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADL 80 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~ 80 (715)
+-+||.+++..++.. .|.||+.|||.|||. ++.+.. ..-..+..+|++.|+..+..|..+.+.... ..+..+||++
T Consensus 87 L~~~Q~eai~~l~~g-~~vLV~apTGSGKTl-va~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~-~~vglltGd~ 163 (1010)
T 2xgj_A 87 LDPFQDTAISCIDRG-ESVLVSAHTSAGKTV-VAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF-GDVGLMTGDI 163 (1010)
T ss_dssp CCHHHHHHHHHHHHT-CEEEEECCTTSCHHH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-SCEEEECSSC
T ss_pred CCHHHHHHHHHHHcC-CCEEEECCCCCChHH-HHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHh-CCEEEEeCCC
Confidence 457999999998765 489999999999994 444333 222346789999999988876554443211 1467899998
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
+... ...|+++||.+|.+-+..+...+.++..|||||||++.+..-...+-.++..-.+...+.+|||++..
T Consensus 164 ~~~~------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 164 TINP------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp EECT------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTT
T ss_pred ccCC------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCC
Confidence 6543 46899999999998888888999999999999999997765445444555555667889999999873
No 47
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.86 E-value=9e-09 Score=126.36 Aligned_cols=162 Identities=13% Similarity=0.049 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLP 81 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~ 81 (715)
+-+||++++..++.. .|.||+.+||-|||.++...+...-..++.||++.|+..+..|....+.... ..+..++|+++
T Consensus 185 ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~-~~VglltGd~~ 262 (1108)
T 3l9o_A 185 LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF-GDVGLMTGDIT 262 (1108)
T ss_dssp CCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT-SSEEEECSSCB
T ss_pred CCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHh-CCccEEeCccc
Confidence 347999999997664 5999999999999954433333222347789999999988877555443311 15777999987
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCccccc
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVS 161 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~ 161 (715)
.. ....|+++||.+|..-|..+...+.++..|||||||++.+..-...+-.++..-.+..-+.+|||++..
T Consensus 263 ~~------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn--- 333 (1108)
T 3l9o_A 263 IN------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPN--- 333 (1108)
T ss_dssp CC------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSS---
T ss_pred cC------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCC---
Confidence 54 347899999999999999998889999999999999998765555566666666778889999999653
Q ss_pred CcchHHHHHHHhcc
Q 005084 162 GFAKTERIMKSLFI 175 (715)
Q Consensus 162 g~~~l~~vmk~L~I 175 (715)
...+...+..+.-
T Consensus 334 -~~e~a~~l~~~~~ 346 (1108)
T 3l9o_A 334 -AMEFAEWICKIHS 346 (1108)
T ss_dssp -CHHHHHHHHHHTC
T ss_pred -HHHHHHHHHhhcC
Confidence 3445555555443
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.83 E-value=1.2e-08 Score=124.19 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC-CCCCCeeecCCCC
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN-APLLPSEITADLP 81 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~-~~~~~~~itge~~ 81 (715)
-+||.+++..++.. +|.||++|||-|||.+....+......++.++++.|+..+..|..+.+... ....+..++|+.+
T Consensus 41 ~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 41 DTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp CHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred CHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 47999999998774 599999999999995433333322234678888888888887766655442 1235678888876
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
.. .+..|+++||.+|.+-+..+...+..+..|||||||++.+..-...+.+++....+..-+.+|||+|..
T Consensus 120 ~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 120 IN------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPN 190 (997)
T ss_dssp EC------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTT
T ss_pred cC------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCC
Confidence 44 346899999999999888898889999999999999997654333344444445567789999999863
No 49
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.83 E-value=1.3e-08 Score=103.69 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCC-CeeecCCC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLL-PSEITADL 80 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~-~~~itge~ 80 (715)
+-+||++.+..++.. +++|++.|+|.|||.++..++.. . +..++++.|+..+..++.+.+...+ .. +..++|+.
T Consensus 94 l~~~Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~-~--~~~~liv~P~~~L~~q~~~~~~~~~-~~~v~~~~g~~ 168 (237)
T 2fz4_A 94 LRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINE-L--STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRI 168 (237)
T ss_dssp CCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHH-S--CSCEEEEESSHHHHHHHHHHHGGGC-GGGEEEESSSC
T ss_pred cCHHHHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 458999999998876 37999999999999554444433 2 4557777778777777666655421 23 56677765
Q ss_pred ChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 81 PANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 81 ~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
.. ...|++.|++.+..++-. + ...+..|||||||++.... +.-+++.+ +..++.+||++|..
T Consensus 169 ~~--------~~~i~v~T~~~l~~~~~~--~-~~~~~llIiDEaH~l~~~~-~~~i~~~~----~~~~~l~LSATp~r 230 (237)
T 2fz4_A 169 KE--------LKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAES-YVQIAQMS----IAPFRLGLTATFER 230 (237)
T ss_dssp BC--------CCSEEEEEHHHHHHTHHH--H-TTTCSEEEEECSSCCCTTT-HHHHHHTC----CCSEEEEEEESCC-
T ss_pred CC--------cCCEEEEeHHHHHhhHHH--h-cccCCEEEEECCccCCChH-HHHHHHhc----cCCEEEEEecCCCC
Confidence 32 568999999998765532 1 2458899999999997643 33344333 35789999999985
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.83 E-value=2.8e-09 Score=129.35 Aligned_cols=170 Identities=11% Similarity=0.060 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecC
Q 005084 2 VLEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itg 78 (715)
+.+||.+++..++.. +.++||+.++|+|||.++..++. +. ....+.+|++.|+....++..+..... ...+.+++|
T Consensus 154 LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~v~~~ 232 (968)
T 3dmq_A 154 LIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFALFDD 232 (968)
T ss_dssp CCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCEECCH
T ss_pred CcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCEEEEcc
Confidence 579999999998864 23678888999999966656655 22 233346888888866656655543322 224555554
Q ss_pred CCChhhH---HHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCCChH----HHHHHHHHhcCcCccEE
Q 005084 79 DLPANHR---HTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTENSTE----TFICRIIKSLNREAYIR 150 (715)
Q Consensus 79 e~~~~~R---~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~~~e----aFI~rlyr~~nk~gfIk 150 (715)
+.....+ ...|....|+++|++.|..|.-. +.+....+..|||||||++...... .-+++.++. +..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~~~L 310 (968)
T 3dmq_A 233 ERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVPGVL 310 (968)
T ss_dssp HHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCSSEE
T ss_pred chhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCCcEE
Confidence 4322211 24566789999999999865321 2244567899999999999764432 223444433 345799
Q ss_pred eecCCCcccccCcchHHHHHHHhccC
Q 005084 151 AFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 151 AfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
++|++|.. .+...+-..++-|...
T Consensus 311 ~LTATPi~--n~~~el~sll~~L~p~ 334 (968)
T 3dmq_A 311 LLTATPEQ--LGMESHFARLRLLDPN 334 (968)
T ss_dssp ESCSSCSS--SCSSCTHHHHHHHCTT
T ss_pred EEEcCCcc--CCHHHHHHHHHhcCcc
Confidence 99999974 2444444555555443
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.75 E-value=5.1e-08 Score=114.02 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeeecC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~itg 78 (715)
+.++|.+++..++.+++|.||+.|||-|||.++...+. .....++.++++.|+..+..+..+.+.... ...+..++|
T Consensus 31 l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 110 (715)
T 2va8_A 31 LNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSG 110 (715)
T ss_dssp CCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCS
T ss_pred CCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 45899999998555567999999999999965544443 222236789999999988766555543211 124667888
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHH---HHHHHHHhcCcCccEEeecCC
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTET---FICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~ea---FI~rlyr~~nk~gfIkAfSds 155 (715)
+....++. .....|+++||..|..-+..+...+.+++.|||||||.+.+..-.. .++...+ ...|.++||+
T Consensus 111 ~~~~~~~~--~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~----~~~ii~lSAT 184 (715)
T 2va8_A 111 DYDTDDAW--LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK----RRNLLALSAT 184 (715)
T ss_dssp CSSSCCGG--GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH----TSEEEEEESC
T ss_pred CCCCchhh--cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc----cCcEEEEcCC
Confidence 87665542 3588999999999988777766668899999999999976533222 2233333 6779999999
Q ss_pred Ccc
Q 005084 156 PTA 158 (715)
Q Consensus 156 P~s 158 (715)
|..
T Consensus 185 l~n 187 (715)
T 2va8_A 185 ISN 187 (715)
T ss_dssp CTT
T ss_pred CCC
Confidence 973
No 52
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.73 E-value=6.5e-08 Score=109.50 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHhc-CCCCeEEEecCCCCHHHHHHHHHH--Hhc-----CCCCEEEEecCCHhHHHHHHHHhCC----C-
Q 005084 2 VLEFHQHIIAELLQ-EPNGGLVILSSGLSLPKLIASVLL--LHS-----PSQGTLLLLSSSPNLKSQIIHYLAP----N- 68 (715)
Q Consensus 2 lL~YQ~~I~~~~l~-~~~d~LvVL~tGLG~~~Iva~ll~--~y~-----~~~~lVlvl~~t~~~~~~i~~~L~~----~- 68 (715)
+-+||.+.+..++. ++.|.|+++|||-|||.+....+. +.. ..+..+|++.|+..+..|+.+.+.. .
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 45899999999884 234889999999999944322222 221 1234788899999988776554432 0
Q ss_pred --CCCCCeeecCCCChhh-HHHh-hcCCCEEEECchHHHHHhhcC-CCCCCCeeEEEEecccccCCCC---hHHHHHHHH
Q 005084 69 --APLLPSEITADLPANH-RHTL-YSSGQIFFVTPRILIVDLLTQ-RLPTSNLAGLIILNTHALTENS---TETFICRII 140 (715)
Q Consensus 69 --~~~~~~~itge~~~~~-R~~l-Y~~ggV~fvTprIL~~DLLs~-ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rly 140 (715)
.......+.|.....+ ...+ -....|+++||..|..-+..+ ...+..+..|||||||++.+.. ....|+..+
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l 254 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 254 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhh
Confidence 1123445566654432 2233 235689999999997555443 3457889999999999998643 233444444
Q ss_pred HhcCc----CccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 141 KSLNR----EAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 141 r~~nk----~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
..... ..-+.+|||+|.. .++...+.+.-.
T Consensus 255 ~~~~~~~~~~~~~l~~SAT~~~------~v~~~~~~~~~~ 288 (563)
T 3i5x_A 255 NEKNSKSADNIKTLLFSATLDD------KVQKLANNIMNK 288 (563)
T ss_dssp HHHCSSCTTCCEEEEEESSCCT------HHHHHTTTTCCS
T ss_pred hhccccCccCceEEEEEccCCH------HHHHHHHHhcCC
Confidence 44332 4459999999974 355555544433
No 53
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.72 E-value=3.7e-08 Score=115.49 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=108.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--HhcCCCCEEEEecCCHhHHHHHHHHhCCC--CCCCCeeec
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHSPSQGTLLLLSSSPNLKSQIIHYLAPN--APLLPSEIT 77 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~~~~~lVlvl~~t~~~~~~i~~~L~~~--~~~~~~~it 77 (715)
+-++|.+++..++.+++|.||+.|||-|||.++...+. +.. .++.++++.|+..+..+..+.+... ....+..++
T Consensus 24 l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 24 FYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp CCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 34799999998444456999999999999955433322 232 2678888889988887766555421 112567889
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChH---HHHHHHHHhcCcCccEEeecC
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTE---TFICRIIKSLNREAYIRAFSD 154 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~e---aFI~rlyr~~nk~gfIkAfSd 154 (715)
|++...++ ......|++.||..|..-+..+...+.+++.|||||||.+.+..-. ..++..++ +...|.++||
T Consensus 103 G~~~~~~~--~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~ii~lSA 177 (720)
T 2zj8_A 103 GDYDSKDE--WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML---GKAQIIGLSA 177 (720)
T ss_dssp SCSSCCCG--GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB---TTBEEEEEEC
T ss_pred CCCCcccc--ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh---cCCeEEEEcC
Confidence 98876655 2457899999999998777777777899999999999998763322 33444444 2678999999
Q ss_pred CCcc
Q 005084 155 KPTA 158 (715)
Q Consensus 155 sP~s 158 (715)
++..
T Consensus 178 Tl~n 181 (720)
T 2zj8_A 178 TIGN 181 (720)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 9873
No 54
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.71 E-value=8.5e-08 Score=106.46 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH--Hhc-CCCCEEEEecCCHhHHHHHHHHhC----CCCCCCCe
Q 005084 3 LEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL--LHS-PSQGTLLLLSSSPNLKSQIIHYLA----PNAPLLPS 74 (715)
Q Consensus 3 L~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~--~y~-~~~~lVlvl~~t~~~~~~i~~~L~----~~~~~~~~ 74 (715)
-++|.+.+..++.. +.|.|++.|||-|||.+....+. +.. ..+..+|++.|+..+..|+.+.+. ........
T Consensus 116 ~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 195 (479)
T 3fmp_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (479)
T ss_dssp CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE
Confidence 46799999998873 34899999999999944333222 221 223478999999988877644332 11112333
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhc-CCCCCCCeeEEEEecccccCCC-ChHHHHHHHHHhcCcCccEEee
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLT-QRLPTSNLAGLIILNTHALTEN-STETFICRIIKSLNREAYIRAF 152 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs-~ri~~~~ItgiVV~~AHr~~~~-~~eaFI~rlyr~~nk~gfIkAf 152 (715)
...+........ .....|++.||..|..-+.. +.+++..+..|||||||++.+. .....+.++.+...+..-+.+|
T Consensus 196 ~~~~~~~~~~~~--~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 196 YAVRGNKLERGQ--KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp EESTTCCCCTTC--CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEE
T ss_pred EEeCCccccccc--cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEE
Confidence 444443322211 22457999999999655544 5788899999999999999863 4445556677766677789999
Q ss_pred cCCCcc
Q 005084 153 SDKPTA 158 (715)
Q Consensus 153 SdsP~s 158 (715)
||+|..
T Consensus 274 SAT~~~ 279 (479)
T 3fmp_B 274 SATFED 279 (479)
T ss_dssp ESCCCH
T ss_pred eCCCCH
Confidence 999974
No 55
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.71 E-value=2.4e-08 Score=116.70 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=115.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeeecC
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEITA 78 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~itg 78 (715)
+-+||.+++..++. ++|.||+.|||-|||.++...+. ... .++.++++.|+..+..+..+.+.... ...+..++|
T Consensus 26 l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 26 LFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34789999999665 46999999999999955443333 222 26678888888888777665553211 124667889
Q ss_pred CCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC---hHHHHHHHHHhcCcCccEEeecCC
Q 005084 79 DLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS---TETFICRIIKSLNREAYIRAFSDK 155 (715)
Q Consensus 79 e~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rlyr~~nk~gfIkAfSds 155 (715)
+....++ ......|+++||..|..=+..+.....+++.|||||||.+.+.. ....++..++..++...+.++||+
T Consensus 104 ~~~~~~~--~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDE--HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 (702)
T ss_dssp SCBCCSS--CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCcchh--hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCC
Confidence 8766554 23578999999999977666665558899999999999986522 334555666666778889999999
Q ss_pred CcccccCcchHHHHHHHhcc
Q 005084 156 PTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 156 P~sf~~g~~~l~~vmk~L~I 175 (715)
+.. .+.+.+-|+.
T Consensus 182 l~n-------~~~~~~~l~~ 194 (702)
T 2p6r_A 182 APN-------VTEIAEWLDA 194 (702)
T ss_dssp CTT-------HHHHHHHTTC
T ss_pred cCC-------HHHHHHHhCC
Confidence 873 3445555553
No 56
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.67 E-value=5.3e-08 Score=118.60 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHhcC-------------CCCeEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEecCCHhHHHHHHHHhC
Q 005084 2 VLEFHQHIIAELLQE-------------PNGGLVILSSGLSLPKLIASVLLLHS--PSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-------------~~d~LvVL~tGLG~~~Iva~ll~~y~--~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+-+||...+..++.. +.++|++++||.|||.++..++.+.. +....||++.++..+..|+.+.+.
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~ 351 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQ 351 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHH
Confidence 458999999987751 23899999999999976655544332 223578888888888777766554
Q ss_pred CCCCCCCeeecCCCChhhHHHhh-cCCCEEEECchHHHHHhhcCC-C-CCCCeeEEEEecccccCCCChHHHHHHHHHhc
Q 005084 67 PNAPLLPSEITADLPANHRHTLY-SSGQIFFVTPRILIVDLLTQR-L-PTSNLAGLIILNTHALTENSTETFICRIIKSL 143 (715)
Q Consensus 67 ~~~~~~~~~itge~~~~~R~~lY-~~ggV~fvTprIL~~DLLs~r-i-~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~ 143 (715)
.... ..+..+.....-+..+- ..++|+|+|||.|...+-.+. + .......||||||||....... +..++.
T Consensus 352 ~f~~--~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~----~~I~~~ 425 (1038)
T 2w00_A 352 RFSP--DSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQ----KNLKKK 425 (1038)
T ss_dssp TTST--TCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHH----HHHHHH
T ss_pred Hhcc--cccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHH----HHHHHh
Confidence 3211 11222222333444442 468999999999987654332 1 3456789999999997643222 222334
Q ss_pred CcCccEEeecCCCcc
Q 005084 144 NREAYIRAFSDKPTA 158 (715)
Q Consensus 144 nk~gfIkAfSdsP~s 158 (715)
-+...+.|||++|..
T Consensus 426 ~p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 426 FKRYYQFGFTGTPIF 440 (1038)
T ss_dssp CSSEEEEEEESSCCC
T ss_pred CCcccEEEEeCCccc
Confidence 456789999999974
No 57
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.65 E-value=1.8e-07 Score=106.74 Aligned_cols=168 Identities=13% Similarity=0.075 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHhcC-CCCeEEEecCCCCHHHHHHHHHH--Hhc-----CCCCEEEEecCCHhHHHHHHHHhCCC-----
Q 005084 2 VLEFHQHIIAELLQE-PNGGLVILSSGLSLPKLIASVLL--LHS-----PSQGTLLLLSSSPNLKSQIIHYLAPN----- 68 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-~~d~LvVL~tGLG~~~Iva~ll~--~y~-----~~~~lVlvl~~t~~~~~~i~~~L~~~----- 68 (715)
+-+||.+++..++.. +.|.|+++|||-|||.+....+. +.. ..+..+|++.|+..+..|+.+.+...
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 458999999998842 34889999999999954332222 221 12357888999998887765544320
Q ss_pred --CCCCCeeecCCCChh-hHHHhhc-CCCEEEECchHHHHHhhcC-CCCCCCeeEEEEecccccCCCC---hHHHHHHHH
Q 005084 69 --APLLPSEITADLPAN-HRHTLYS-SGQIFFVTPRILIVDLLTQ-RLPTSNLAGLIILNTHALTENS---TETFICRII 140 (715)
Q Consensus 69 --~~~~~~~itge~~~~-~R~~lY~-~ggV~fvTprIL~~DLLs~-ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rly 140 (715)
.......+.|..... ....+.. ...|+++||..|..-+..+ ...+..+..|||||||++.+.. ....|+..+
T Consensus 124 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l 203 (579)
T 3sqw_A 124 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 203 (579)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred cccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHh
Confidence 112344555555433 2333322 5789999999997544443 4567889999999999997643 233345544
Q ss_pred HhcCc----CccEEeecCCCcccccCcchHHHHHHHhcc
Q 005084 141 KSLNR----EAYIRAFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 141 r~~nk----~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
..... ..-+.+|||++.. .+....+.+.-
T Consensus 204 ~~~~~~~~~~~~~l~~SAT~~~------~v~~~~~~~l~ 236 (579)
T 3sqw_A 204 NEKNSKSADNIKTLLFSATLDD------KVQKLANNIMN 236 (579)
T ss_dssp HHHCSSCTTCCEEEEEESSCCT------HHHHHTTTTCC
T ss_pred hhhhcccccCceEEEEeccCCh------HHHHHHHHHcC
Confidence 44332 4469999999874 35555554443
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.57 E-value=2.9e-07 Score=113.60 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhcC---C--CCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCC-C--CCCCC
Q 005084 3 LEFHQHIIAELLQE---P--NGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAP-N--APLLP 73 (715)
Q Consensus 3 L~YQ~~I~~~~l~~---~--~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~-~--~~~~~ 73 (715)
-+||...+..++.+ + .|.||+.+||.|||.+ |.+.. .....+..|+++.||..+..|..+.+.. . ....+
T Consensus 605 t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~v-al~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v 683 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV-AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 683 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHH-HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCE
T ss_pred CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHH-HHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeE
Confidence 47999999998762 2 3899999999999944 43322 2223466888888998888765444431 1 11245
Q ss_pred eeecCCCChhhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 74 SEITADLPANHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
..+++..+.+++...+. ...|++.||+.| ++.+...++..|||||||+. +... .+.++...+...
T Consensus 684 ~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIiDEaH~~-g~~~----~~~l~~l~~~~~ 753 (1151)
T 2eyq_A 684 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRF-GVRH----KERIKAMRANVD 753 (1151)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGS-CHHH----HHHHHHHHTTSE
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEEEechHhc-ChHH----HHHHHHhcCCCC
Confidence 67888888877776654 357999999765 55678899999999999995 2222 223333345678
Q ss_pred EEeecCCCcc
Q 005084 149 IRAFSDKPTA 158 (715)
Q Consensus 149 IkAfSdsP~s 158 (715)
+.+|||+|..
T Consensus 754 vl~lSATp~p 763 (1151)
T 2eyq_A 754 ILTLTATPIP 763 (1151)
T ss_dssp EEEEESSCCC
T ss_pred EEEEcCCCCh
Confidence 9999999974
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.55 E-value=1.3e-07 Score=112.26 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHhcC-----CCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCC
Q 005084 2 VLEFHQHIIAELLQE-----PNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLP 73 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~-----~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~ 73 (715)
+-++|++.+..++.+ +.|.||+.+||-|||.++...+...-..+..++++.|+..+..|+.+.+... ....+
T Consensus 369 lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v 448 (780)
T 1gm5_A 369 LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHV 448 (780)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCE
T ss_pred CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceE
Confidence 347899999987752 1389999999999994433333222123567888889988887754443211 11356
Q ss_pred eeecCCCChhhHHHhhc-----CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCcCcc
Q 005084 74 SEITADLPANHRHTLYS-----SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNREAY 148 (715)
Q Consensus 74 ~~itge~~~~~R~~lY~-----~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gf 148 (715)
..++|.++.++|...|. +..|++.||..|. ..+...++..|||||||+.-. .. -..++......-
T Consensus 449 ~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~~~~~~l~lVVIDEaHr~g~-~q----r~~l~~~~~~~~ 518 (780)
T 1gm5_A 449 ALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGV-KQ----REALMNKGKMVD 518 (780)
T ss_dssp EECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC----------CCCCSSSSCCC
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----hhhhccCCceEEecccchhhH-HH----HHHHHHhCCCCC
Confidence 78899999998887775 3589999998764 357789999999999999622 11 112344445678
Q ss_pred EEeecCCCcc
Q 005084 149 IRAFSDKPTA 158 (715)
Q Consensus 149 IkAfSdsP~s 158 (715)
+.+|||+|..
T Consensus 519 vL~mSATp~p 528 (780)
T 1gm5_A 519 TLVMSATPIP 528 (780)
T ss_dssp EEEEESSCCC
T ss_pred EEEEeCCCCH
Confidence 9999999964
No 60
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.44 E-value=6.8e-07 Score=109.82 Aligned_cols=150 Identities=10% Similarity=0.095 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhCCCC--CCCCeeecCC
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLAPNA--PLLPSEITAD 79 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~~~~--~~~~~~itge 79 (715)
-++|.+.+..++.. .|.|++.|||-|||. ++.+..++ ...+..+|++.|+..+..|+.+.+.... ...+..++|.
T Consensus 80 t~iQ~~ai~~il~g-~dvlv~ApTGSGKTl-~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg 157 (1104)
T 4ddu_A 80 TGYQRLWAKRIVQG-KSFTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS 157 (1104)
T ss_dssp CHHHHHHHHHHTTT-CCEEECCSTTCCHHH-HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTT
T ss_pred CHHHHHHHHHHHcC-CCEEEEeCCCCcHHH-HHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 47899999998875 599999999999995 44444322 2446789999999999888766665421 1256788899
Q ss_pred CChhhHHHh---hcC--CCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC------------h---HHHHHHH
Q 005084 80 LPANHRHTL---YSS--GQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS------------T---ETFICRI 139 (715)
Q Consensus 80 ~~~~~R~~l---Y~~--ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~------------~---eaFI~rl 139 (715)
.+..+|... ... ..|+++||..|.. ++. .++...+..|||||||.+...+ . ...|++.
T Consensus 158 ~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~-~l~-~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~ 235 (1104)
T 4ddu_A 158 MKKEEKEKFEKSFEEDDYHILVFSTQFVSK-NRE-KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFST 235 (1104)
T ss_dssp CCTTHHHHHHHHHHTSCCSEEEEEHHHHHH-SHH-HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCEEEECHHHHHH-HHH-hhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHh
Confidence 887555332 223 5899999999953 333 2778899999999999876532 1 1233333
Q ss_pred HH--------hcCcCccEEeecCCC
Q 005084 140 IK--------SLNREAYIRAFSDKP 156 (715)
Q Consensus 140 yr--------~~nk~gfIkAfSdsP 156 (715)
.. ...+...+.+|||+|
T Consensus 236 l~~~~~~~~~~~~~~~q~ll~SAT~ 260 (1104)
T 4ddu_A 236 IKQGKIYERPKNLKPGILVVSSATA 260 (1104)
T ss_dssp HHHTSCCCCCSSCCCCEEEEECBSS
T ss_pred cccchhhhhhccCCCceEEEEcCCC
Confidence 32 011567899999994
No 61
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.33 E-value=8.6e-07 Score=89.51 Aligned_cols=152 Identities=12% Similarity=0.096 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH--Hhc-C--CCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeec
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL--LHS-P--SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEIT 77 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~--~y~-~--~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~it 77 (715)
-+||.+++..+... ++.+++-+||-|||..+..++. ... . .+..++++.|+.....++.+.+.......+....
T Consensus 63 ~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 63 KKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp GGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 36899999887765 4889999999999966655544 221 1 1347788888887776654444221000111111
Q ss_pred CCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEeccccc-CCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 78 ADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHAL-TENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 78 ge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~-~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
|.....++........|+++||..|..-+.. .+.++..||+||||+. .......-+++......+..-+..|||++
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~ 218 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI 218 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 1100011111112355999999888766655 4899999999999983 22111111334333444456689999998
Q ss_pred cc
Q 005084 157 TA 158 (715)
Q Consensus 157 ~s 158 (715)
..
T Consensus 219 ~~ 220 (235)
T 3llm_A 219 DT 220 (235)
T ss_dssp CC
T ss_pred CH
Confidence 74
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.28 E-value=6.3e-06 Score=105.21 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---HhcCCCCEEEEecCCHhHHHHHHHH----hCCCCCCCCeee
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHSPSQGTLLLLSSSPNLKSQIIHY----LAPNAPLLPSEI 76 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~~~~~lVlvl~~t~~~~~~i~~~----L~~~~~~~~~~i 76 (715)
+.|.+++..++..++|.||+.|||=||| ++|.+.. +...+++.++++.|+..++.+.-+. +.......+..+
T Consensus 929 piQ~q~~~~l~~~~~nvlv~APTGSGKT-liaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 929 PIQTQVFNTVYNSDDNVFVGAPTGSGKT-ICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp HHHHHHHHHHHSCCSCEEEECCTTSCCH-HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCch-HHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 5799999999887668999999999999 5555443 3344577888889999888664333 332112246778
Q ss_pred cCCCChhhHHHhhcCCCEEEECchHHHHHhhc---CCCCCCCeeEEEEecccccCCCC---hHHHHHHHH---HhcCcCc
Q 005084 77 TADLPANHRHTLYSSGQIFFVTPRILIVDLLT---QRLPTSNLAGLIILNTHALTENS---TETFICRII---KSLNREA 147 (715)
Q Consensus 77 tge~~~~~R~~lY~~ggV~fvTprIL~~DLLs---~ri~~~~ItgiVV~~AHr~~~~~---~eaFI~rly---r~~nk~g 147 (715)
||+++.+.| ....+.|+++||-.+.. |+. ++-.+.+|..+||||+|.+.+.. -+..|.++- .+..+..
T Consensus 1008 tGd~~~~~~--~~~~~~IiV~TPEkld~-llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ 1084 (1724)
T 4f92_B 1008 TGETSTDLK--LLGKGNIIISTPEKWDI-LSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPI 1084 (1724)
T ss_dssp CSCHHHHHH--HHHHCSEEEECHHHHHH-HHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ECCCCcchh--hcCCCCEEEECHHHHHH-HHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCc
Confidence 998776544 34678999999999733 332 22235689999999999886633 234444432 2334567
Q ss_pred cEEeecCCCcccccCcchHHHHHHHhccCe
Q 005084 148 YIRAFSDKPTAMVSGFAKTERIMKSLFIRK 177 (715)
Q Consensus 148 fIkAfSdsP~sf~~g~~~l~~vmk~L~I~~ 177 (715)
.|.||||+-.. .+.+.+-|++..
T Consensus 1085 riI~lSATl~N-------~~dla~WL~~~~ 1107 (1724)
T 4f92_B 1085 RIVALSSSLSN-------AKDVAHWLGCSA 1107 (1724)
T ss_dssp EEEEEESCBTT-------HHHHHHHHTCCS
T ss_pred eEEEEeCCCCC-------HHHHHHHhCCCC
Confidence 89999998542 455566666653
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.27 E-value=6.9e-06 Score=104.84 Aligned_cols=160 Identities=17% Similarity=0.240 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH---Hhc---------CCCCEEEEecCCHhHHHHHHHH----hCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL---LHS---------PSQGTLLLLSSSPNLKSQIIHY----LAP 67 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~---~y~---------~~~~lVlvl~~t~~~~~~i~~~----L~~ 67 (715)
+.|..++..++..++|.||+.|||=||| ++|.|.. +.. ..+..|+.+.|+..++.++.+. +..
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKT-lva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~ 160 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKT-NVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCH-HHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcchHH-HHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 5689999999987679999999999999 5554443 221 2356899999999998765443 332
Q ss_pred CCCCCCeeecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCC----CCCeeEEEEecccccCCC---ChHHHHHHHH
Q 005084 68 NAPLLPSEITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLP----TSNLAGLIILNTHALTEN---STETFICRII 140 (715)
Q Consensus 68 ~~~~~~~~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~----~~~ItgiVV~~AHr~~~~---~~eaFI~rly 140 (715)
.+ ..+..+||+++..+|. .....|++.||-.+ |.+...-. +.+|..|||||+|-+-+. .-|..+.|+.
T Consensus 161 ~g-i~V~~~tGd~~~~~~~--~~~~~IlVtTpEkl--d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~ 235 (1724)
T 4f92_B 161 YG-ITVAELTGDHQLCKEE--ISATQIIVCTPEKW--DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAI 235 (1724)
T ss_dssp TT-CCEEECCSSCSSCCTT--GGGCSEEEECHHHH--HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHH
T ss_pred CC-CEEEEEECCCCCCccc--cCCCCEEEECHHHH--HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHH
Confidence 21 2467789998876553 46788999999987 55544322 578999999999977442 3566677754
Q ss_pred H---hcCcCccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 141 K---SLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 141 r---~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
+ ..++...|.|+||+-.. ++.+-+-|+..
T Consensus 236 ~~~~~~~~~~riI~LSATl~N-------~~dvA~wL~~~ 267 (1724)
T 4f92_B 236 RNIEMTQEDVRLIGLSATLPN-------YEDVATFLRVD 267 (1724)
T ss_dssp HHHHHHTCCCEEEEEECSCTT-------HHHHHHHTTCC
T ss_pred HHHHhCCCCCcEEEEecccCC-------HHHHHHHhCCC
Confidence 4 34556789999998642 44555555543
No 64
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.22 E-value=1.9e-06 Score=105.55 Aligned_cols=147 Identities=10% Similarity=0.098 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhC----CCCCC---CCee
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLA----PNAPL---LPSE 75 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~----~~~~~---~~~~ 75 (715)
++|.+.+..++.. +|.|++.|||-|||. ++..+. .....+..++++.|+..+..|+.+.+. ..+.. .+..
T Consensus 59 ~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEE
Confidence 7999999998865 599999999999994 443333 222346788888999988877655443 21110 4567
Q ss_pred ecCCCChhhHHHhh---cCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc---------
Q 005084 76 ITADLPANHRHTLY---SSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--------- 143 (715)
Q Consensus 76 itge~~~~~R~~lY---~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--------- 143 (715)
++|..+..+|.+.+ .+..|+++||..|.. ++.. +..+..|||||||++.+ +. ..+-.+|+.-
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~-~l~~---L~~l~~lViDEah~~l~-~~-~~~~~i~~~lgf~~~~~~~ 210 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRNFKIVITTTQFLSK-HYRE---LGHFDFIFVDDVDAILK-AS-KNVDKLLHLLGFHYDLKTK 210 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH-CSTT---SCCCSEEEESCHHHHHT-ST-HHHHHHHHHTTEEEETTTT
T ss_pred EeCCCChhhHHHHHhhccCCCEEEEcHHHHHH-HHHH---hccCCEEEEeChhhhhh-cc-ccHHHHHHHhCcchhhhhh
Confidence 88998887754332 348999999999885 4443 56999999999999887 22 2233444322
Q ss_pred --CcCccEEeecCCCcc
Q 005084 144 --NREAYIRAFSDKPTA 158 (715)
Q Consensus 144 --nk~gfIkAfSdsP~s 158 (715)
.+..-+..||+++..
T Consensus 211 ~~~~~~q~~l~SAT~t~ 227 (1054)
T 1gku_B 211 SWVGEARGCLMVSTATA 227 (1054)
T ss_dssp EEEECCSSEEEECCCCS
T ss_pred hcccCCceEEEEecCCC
Confidence 122336777777664
No 65
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.07 E-value=1.1e-05 Score=89.21 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=84.6
Q ss_pred CCeEEEecCCCCHHHHH-HHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEE
Q 005084 18 NGGLVILSSGLSLPKLI-ASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIF 95 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iv-a~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~ 95 (715)
+|.|++.|||-|||.++ ..++. +. ..+..++++.|+..+.+|+.+.+... .+...+|...... ....-+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt~~La~Q~~~~~~~~---~v~~~~~~~~~~~----~~~~~~~ 74 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASEMYEALRGE---PIRYMTPAVQSER----TGNEIVD 74 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTTTS---CEEEC-------------CCCSEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcHHHHHHHHHHHhCCC---eEEEEecCccccC----CCCceEE
Confidence 58999999999999554 23332 33 23567888889999999988887531 3344555432211 1123456
Q ss_pred EECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEeecCCCcc
Q 005084 96 FVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAFSDKPTA 158 (715)
Q Consensus 96 fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSdsP~s 158 (715)
++|...+..-++. .....++..|||||||+. +.+.... ...+++. .+..-+.+|||+|..
T Consensus 75 ~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~-~~~l~~~~~~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 75 FMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAA-RGYIETRVSMGDAGAIFMTATPPG 136 (431)
T ss_dssp EEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHH-HHHHHHHHHTTSCEEEEEESSCTT
T ss_pred EEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHH-HHHHHHHhhCCCCcEEEEeCCCCc
Confidence 7888888877777 667899999999999997 4222222 2222222 456789999999985
No 66
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.96 E-value=2.1e-05 Score=87.32 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=87.4
Q ss_pred HHHHHhcCCCCeEEEecCCCCHHHH-HHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHH
Q 005084 9 IIAELLQEPNGGLVILSSGLSLPKL-IASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRH 86 (715)
Q Consensus 9 I~~~~l~~~~d~LvVL~tGLG~~~I-va~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~ 86 (715)
++..++...++.|++.|||-|||.. +.-++. +.. .+..++++.|+..+..|+.+.+... .+..-+.....
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~g~---~v~~~~~~~~~---- 82 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALRGL---PIRYQTPAVKS---- 82 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS---CEEECCTTCSC----
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhcCc---eeeeeeccccc----
Confidence 3445666543448888999999963 333333 332 3567888889999999988887531 11111111110
Q ss_pred HhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHH--HhcCcCccEEeecCCCcc
Q 005084 87 TLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRII--KSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 87 ~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rly--r~~nk~gfIkAfSdsP~s 158 (715)
......-+.++|+.+|..-+++. ..+..+..|||||||+... ...+...+. +...+..-+.+|||+|..
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~--~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDP--CSVAARGYISTRVEMGEAAAIFMTATPPG 153 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCSH--HHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCCc--chHHHHHHHHHhhcCCCceEEEEccCCCc
Confidence 11223457899999998777755 6688999999999998822 111222222 223446789999999965
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.94 E-value=1.7e-05 Score=88.29 Aligned_cols=137 Identities=11% Similarity=0.096 Sum_probs=88.1
Q ss_pred HHHhcCCCCeEEEecCCCCHHHHHH-HHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh
Q 005084 11 AELLQEPNGGLVILSSGLSLPKLIA-SVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL 88 (715)
Q Consensus 11 ~~~l~~~~d~LvVL~tGLG~~~Iva-~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l 88 (715)
.+++.+++|.||+.|||-|||.++. -++. +.. .+..++++.|+..+..|+.+.+... .+...++..... -
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~g~---~v~~~~~~~~~~----~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALRGL---PVRYQTSAVQRE----H 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTTTS---CEEECC-----------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhcCc---eEeEEecccccC----C
Confidence 4467777789999999999996532 3333 332 3567888889999999988887631 112112111110 1
Q ss_pred hcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC--ChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 89 YSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN--STETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 89 Y~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~--~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
....-+.++|..++..-+++. ..+..+..|||||||+.... ....|+..+.. .+..-+.+|||+|..
T Consensus 87 t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~--~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE--LGEAAAIFMTATPPG 155 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH--TTSCEEEEECSSCTT
T ss_pred CCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhc--cCCccEEEEEcCCCc
Confidence 112336688999988888876 67889999999999986321 12334443332 356789999999975
No 68
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.81 E-value=2.4e-05 Score=92.77 Aligned_cols=150 Identities=9% Similarity=0.082 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhc---CCCCEEEEecCCHhHHHHHHHHhCCCCCCCCe-eecCC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHS---PSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPS-EITAD 79 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~---~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~-~itge 79 (715)
.-|++.+..++.++++.+|+.|||-|||.++..++.... ..+..++++.|+..+..++.+.+.......+. .+.+.
T Consensus 96 ~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~ 175 (773)
T 2xau_A 96 HAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYS 175 (773)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecce
Confidence 456666677676655789999999999987777655321 12566888888888776654433210000011 11111
Q ss_pred CChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccc-cCC-CChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 80 LPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHA-LTE-NSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 80 ~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr-~~~-~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
+.... .......|+++||..|..-++.+ ..+..+..||+||||. ... .....++-++ ....+..-+.+||+++.
T Consensus 176 i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l-~~~~~~~~iIl~SAT~~ 251 (773)
T 2xau_A 176 IRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQV-VKRRPDLKIIIMSATLD 251 (773)
T ss_dssp ETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHH-HHHCTTCEEEEEESCSC
T ss_pred ecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHH-HHhCCCceEEEEecccc
Confidence 11111 11245679999999998877764 5689999999999994 443 2223444333 34456778999999984
No 69
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.61 E-value=3e-05 Score=90.30 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=85.6
Q ss_pred hcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCC
Q 005084 14 LQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQ 93 (715)
Q Consensus 14 l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~gg 93 (715)
+.+++|.|++.+||-|||..+...+. . .+..+|++.|+..+..|+.+.+.......+....|... +.....
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l~ll-~--~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~------~~~~~~ 299 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPAAYA-A--QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT------ITTGAP 299 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHHH-H--TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE------ECCCCS
T ss_pred HHcCCeEEEEeCCchhHHHHHHHHHH-H--CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe------ccCCCC
Confidence 44445889999999999954443322 2 24578999999988877755443211113455555543 344578
Q ss_pred EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcC--cCccEEeecCCCcc
Q 005084 94 IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN--REAYIRAFSDKPTA 158 (715)
Q Consensus 94 V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n--k~gfIkAfSdsP~s 158 (715)
|+++||..| +-.+.+....+..|||||||.....+ +..+.++.+... +...+..|||+|..
T Consensus 300 IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~-~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 300 VTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTT-ILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp EEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHH-HHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred EEEECcHHH---HhCCCcccCcccEEEEccchhcCccH-HHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 999999998 44678889999999999998764432 222333333322 22346667999975
No 70
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.59 E-value=0.00021 Score=81.25 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=86.2
Q ss_pred hHHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCC---CCCeee
Q 005084 3 LEFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAP---LLPSEI 76 (715)
Q Consensus 3 L~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~---~~~~~i 76 (715)
-++|.+++.. ++..+.+.++..|||-||| +++.+-.+. .+..|+++.||..+..|+.+.+..... .....+
T Consensus 5 r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT-~~~l~p~l~--~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l 81 (551)
T 3crv_A 5 RDWQEKLKDKVIEGLRNNFLVALNAPTGSGKT-LFSLLVSLE--VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFL 81 (551)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEECCTTSSHH-HHHHHHHHH--HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEEC
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCccHH-HHHHHHHHh--CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEE
Confidence 4789998775 3445568999999999999 544443444 356889999999988888777754311 122334
Q ss_pred cCCC----Ch--------------------------hhH----------------------HHhhcCCCEEEECchHHHH
Q 005084 77 TADL----PA--------------------------NHR----------------------HTLYSSGQIFFVTPRILIV 104 (715)
Q Consensus 77 tge~----~~--------------------------~~R----------------------~~lY~~ggV~fvTprIL~~ 104 (715)
+|.. .. ..+ +++-...-|+++|+.-|..
T Consensus 82 ~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~ 161 (551)
T 3crv_A 82 VGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFI 161 (551)
T ss_dssp CCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHC
T ss_pred ccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcC
Confidence 4310 00 000 1122356899999999999
Q ss_pred HhhcCCCCC-CCeeEEEEecccccCCCChHH
Q 005084 105 DLLTQRLPT-SNLAGLIILNTHALTENSTET 134 (715)
Q Consensus 105 DLLs~ri~~-~~ItgiVV~~AHr~~~~~~ea 134 (715)
|++.+.+.+ .....+||||||++.+ ..+.
T Consensus 162 ~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~ 191 (551)
T 3crv_A 162 DRYREFIDIDLREYMIVIDEAHNLDK-VNEL 191 (551)
T ss_dssp HHHHTTSCCCSTTEEEEETTGGGGGG-GGGG
T ss_pred HHHHHhcCCCcCCeEEEEecccchHH-HHHh
Confidence 988876543 3567899999999988 6544
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.57 E-value=1.5e-05 Score=88.28 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=78.1
Q ss_pred hcCCCCeEEEecCCCCHHHHHH-HHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcC
Q 005084 14 LQEPNGGLVILSSGLSLPKLIA-SVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSS 91 (715)
Q Consensus 14 l~~~~d~LvVL~tGLG~~~Iva-~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ 91 (715)
+.+++|.|++.|||-|||.++. .++. +.. .+..++++.|+..+..|+.+.+... .+..-++.+.. .-..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~~---~v~~~~~~~~~-----v~Tp 75 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHGL---DVKFHTQAFSA-----HGSG 75 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS---CEEEESSCCCC-----CCCS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhcC---CeEEeccccee-----ccCC
Confidence 4445699999999999995532 2222 333 3557888889999999888877632 11111211110 0000
Q ss_pred CCE-EEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC--ChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 92 GQI-FFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN--STETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 92 ggV-~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~--~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
|.+ -+++...+.. .+.....+.++..|||||||++... ....|+.++.. .+..-+.+|||+|..
T Consensus 76 ~~l~~~l~~~~l~~-~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~--~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 76 REVIDAMCHATLTY-RMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR--ANESATILMTATPPG 142 (440)
T ss_dssp SCCEEEEEHHHHHH-HHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH--TTSCEEEEECSSCTT
T ss_pred ccceeeecccchhH-hhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc--cCCceEEEEeCCCCc
Confidence 111 1222233322 2233356899999999999998221 12345555443 345789999999975
No 72
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.49 E-value=0.00022 Score=82.55 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=87.0
Q ss_pred HhcCCCCeEEEecCCCCHHHHHH-HHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc
Q 005084 13 LLQEPNGGLVILSSGLSLPKLIA-SVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS 90 (715)
Q Consensus 13 ~l~~~~d~LvVL~tGLG~~~Iva-~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~ 90 (715)
++.+++|.|++.+||-|||.+++ -++. +.. .+..+|++.|+..+..|+.+.+... .+. ..+.... .....
T Consensus 182 ~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~~~---~v~-~~~~~l~---~~~tp 253 (618)
T 2whx_A 182 IFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALRGL---PIR-YQTPAVK---SDHTG 253 (618)
T ss_dssp GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS---CEE-ECCTTSS---CCCCS
T ss_pred HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhcCC---cee-Eecccce---eccCC
Confidence 44556699999999999996532 3333 333 3567888999999999998888531 111 2221100 00111
Q ss_pred CCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCC--hHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 91 SGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENS--TETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 91 ~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~--~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
..-+.++|..+|..-++.. ..+..+..||+||||+....+ ...+|.+... .+..-+.+|||+|..
T Consensus 254 ~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~--~~~~q~il~SAT~~~ 320 (618)
T 2whx_A 254 REIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE--MGEAAAIFMTATPPG 320 (618)
T ss_dssp SSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH--HTSCEEEEECSSCTT
T ss_pred CceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCCCccHHHHHHHHHHHhc--ccCccEEEEECCCch
Confidence 2345678888888877766 568899999999999982211 1223333332 145679999999975
No 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.44 E-value=0.00029 Score=82.34 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=83.6
Q ss_pred hcCCCCeEEEecCCCCHHHHH-HHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCC
Q 005084 14 LQEPNGGLVILSSGLSLPKLI-ASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSG 92 (715)
Q Consensus 14 l~~~~d~LvVL~tGLG~~~Iv-a~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~g 92 (715)
+..++|.|++.+||-|||.++ ..++......+..++++.|+..+..|+.+.+.... +...++.... .-..|
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~---i~~~~~~l~~-----v~tp~ 309 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP---VRYLTPAVQR-----EHSGN 309 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC---CEECCC---C-----CCCSC
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC---eeeecccccc-----cCCHH
Confidence 335569999999999999543 22222212235678888899999999888876421 2211111110 01111
Q ss_pred C-EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC--ChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 93 Q-IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN--STETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 93 g-V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~--~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
. +-+++...+..-++.. ..+.++..|||||||+.... ....|+.++.. .+..-+.+|||+|..
T Consensus 310 ~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDPASIAARGYIATRVE--AGEAAAIFMTATPPG 375 (673)
T ss_dssp CCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH--TTSCEEEEECSSCTT
T ss_pred HHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCccHHHHHHHHHHhcc--ccCCcEEEEcCCCCh
Confidence 1 3455666666666664 67899999999999998221 13344444432 246789999999974
No 74
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.26 E-value=0.0003 Score=79.91 Aligned_cols=123 Identities=12% Similarity=0.123 Sum_probs=77.4
Q ss_pred hHHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCC
Q 005084 3 LEFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITAD 79 (715)
Q Consensus 3 L~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge 79 (715)
-++|.+++.. ++..+.+.|+.+|||-||| +++.+-.+.. +..|+++.+|..+.+|+.+.+...+ ..+..+.|.
T Consensus 9 r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT-~~~l~~~~~~--~~~~~~~~~t~~l~~q~~~~~~~l~-~~~~~l~gr 84 (540)
T 2vl7_A 9 RQWQAEKLGEAINALKHGKTLLLNAKPGLGKT-VFVEVLGMQL--KKKVLIFTRTHSQLDSIYKNAKLLG-LKTGFLIGK 84 (540)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHH-HHHHHHHHHH--TCEEEEEESCHHHHHHHHHHHGGGT-CCEEEC---
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHH-HHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHHHhcC-CcEEEecCC
Confidence 3689998764 3455569999999999999 4443333322 5688899888888888766664321 112222221
Q ss_pred C----------Chh-----------------hH---------------------HHhhcCCCEEEECchHHHHHhhcCCC
Q 005084 80 L----------PAN-----------------HR---------------------HTLYSSGQIFFVTPRILIVDLLTQRL 111 (715)
Q Consensus 80 ~----------~~~-----------------~R---------------------~~lY~~ggV~fvTprIL~~DLLs~ri 111 (715)
- .+. ++ ++.....-|+++|+.-|..|+..+.+
T Consensus 85 ~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~ 164 (540)
T 2vl7_A 85 SASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSV 164 (540)
T ss_dssp ------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHHHHH
T ss_pred ccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhh
Confidence 0 000 00 01123458999999999998876543
Q ss_pred C-------CCCeeEEEEecccccCCC
Q 005084 112 P-------TSNLAGLIILNTHALTEN 130 (715)
Q Consensus 112 ~-------~~~ItgiVV~~AHr~~~~ 130 (715)
. ......+||||||++ +.
T Consensus 165 ~~~~~~~~~~~~~~vIiDEAHnl-~~ 189 (540)
T 2vl7_A 165 FCNKDDCLKLEDYLIVIDEAHNL-LE 189 (540)
T ss_dssp SCSSTTSCCGGGEEEEETTGGGG-GG
T ss_pred CcccccccCcCCCEEEEEccccH-HH
Confidence 2 234678999999999 54
No 75
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.98 E-value=0.0015 Score=77.44 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeecCCCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEITADLP 81 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~itge~~ 81 (715)
|..-.--++.. + +..+.||=||| +++.|-. +..-.+.-|+|+.||..+..|+.+.+... -...+..+.|.++
T Consensus 79 Q~~~i~~ll~G--~-Iaem~TGsGKT-laf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~ 154 (853)
T 2fsf_A 79 QLLGGMVLNER--C-IAEMRTGEGKT-LTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMP 154 (853)
T ss_dssp HHHHHHHHHSS--E-EEECCTTSCHH-HHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCC
T ss_pred HHhhcccccCC--e-eeeecCCchHH-HHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 44444445543 4 99999999999 4444332 22223556899999999987765443211 0124667889998
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCC-------CCCCCeeEEEEecccccC
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQR-------LPTSNLAGLIILNTHALT 128 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~r-------i~~~~ItgiVV~~AHr~~ 128 (715)
...|...|. .-|++.||--|..|+|... +....+..+||||||++.
T Consensus 155 ~~~r~~~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 155 APAKREAYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHHHHHHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHHHHHhcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 888888884 6899999999988888755 566899999999999866
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.98 E-value=0.002 Score=76.74 Aligned_cols=149 Identities=18% Similarity=0.160 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeecCCCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEITADLP 81 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~itge~~ 81 (715)
|..-.--++.. + +..+.||=||| +++.|-. +..-.|.-|+|+.||..+..|+.+.+... -...+..++|.++
T Consensus 84 Q~~~ip~LlqG--~-IaeakTGeGKT-Lvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~ 159 (997)
T 2ipc_A 84 QLIGGAVLHEG--K-IAEMKTGEGKT-LVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHAST 159 (997)
T ss_dssp HHHHHHHHHTT--S-EEECCSTHHHH-HHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCC
T ss_pred HHhhcccccCC--c-eeeccCCCchH-HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 44444445554 5 88999999999 5554444 33334566999999999987755443221 1124668899999
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCCC-------CCC---CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEe
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQRL-------PTS---NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRA 151 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~ri-------~~~---~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkA 151 (715)
+.+|+..|. .-|++.||--|..|+|...+ ... .+..+||||||++.- ..+..++|..
T Consensus 160 ~~~r~~ay~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi------------DeartPLIIS 226 (997)
T 2ipc_A 160 PAERRKAYL-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI------------DEARTPLIIS 226 (997)
T ss_dssp HHHHHHHHT-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT------------SSTTSCEEEE
T ss_pred HHHHHHHcC-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH------------hCCCCCeeee
Confidence 999999995 68999999999999998664 456 788999999997543 3445665543
Q ss_pred ecCCCcccccCcchHHHHHHHh
Q 005084 152 FSDKPTAMVSGFAKTERIMKSL 173 (715)
Q Consensus 152 fSdsP~sf~~g~~~l~~vmk~L 173 (715)
- ..|.+ +.-|..+..+++.|
T Consensus 227 g-p~~~~-~~lY~~~~~~i~~L 246 (997)
T 2ipc_A 227 G-PAEKA-TDLYYKMAEIAKKL 246 (997)
T ss_dssp E-SCSSC-HHHHHHHHHHHHHS
T ss_pred C-CCccc-hHHHHHHHHHHHHh
Confidence 3 33333 22356677777777
No 77
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.83 E-value=0.0029 Score=75.38 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=80.7
Q ss_pred CeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeecCCCChhhHHHhhcCCCE
Q 005084 19 GGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEITADLPANHRHTLYSSGQI 94 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~itge~~~~~R~~lY~~ggV 94 (715)
+-+..+.||=||| +++.|-. +..-.|.-|+|+.+|+.+..|+.+.+... -...+.++.|.+++.+|+..|. .-|
T Consensus 126 G~Iaem~TGeGKT-La~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~-~DI 203 (922)
T 1nkt_A 126 GNVAEMKTGEGKT-LTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYN-ADI 203 (922)
T ss_dssp TEEEECCTTSCHH-HHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHH-SSE
T ss_pred CCEEEecCCCccH-HHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC-CCE
Confidence 3499999999999 5554433 33333566999999999987754433210 0124667889999999999994 689
Q ss_pred EEECchHHHHHhhcCC-------CCCCCeeEEEEecccccC
Q 005084 95 FFVTPRILIVDLLTQR-------LPTSNLAGLIILNTHALT 128 (715)
Q Consensus 95 ~fvTprIL~~DLLs~r-------i~~~~ItgiVV~~AHr~~ 128 (715)
++.||-=|..|+|... +....+.-+||||||++.
T Consensus 204 vygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 204 TYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred EEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 9999999988888654 566789999999999875
No 78
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.78 E-value=0.0036 Score=74.35 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCC---CCCCCeeecCCCC
Q 005084 6 HQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPN---APLLPSEITADLP 81 (715)
Q Consensus 6 Q~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~---~~~~~~~itge~~ 81 (715)
|..-+--++.. . +..+.||=||| +++.|-. +..-.+.-|+|+.||..++.|+.+.+... -...+..+.|.++
T Consensus 88 Q~~~ip~ll~G--~-Iaea~TGeGKT-laf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~ 163 (844)
T 1tf5_A 88 QLMGGVALHDG--N-IAEMKTGEGKT-LTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMS 163 (844)
T ss_dssp HHHHHHHHHTT--S-EEECCTTSCHH-HHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSC
T ss_pred HHHhhHHHhCC--C-EEEccCCcHHH-HHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCC
Confidence 44444445554 4 99999999999 5554433 23334667999999999998765443211 0124667888899
Q ss_pred hhhHHHhhcCCCEEEECchHHHHHhhcCC-------CCCCCeeEEEEecccccC
Q 005084 82 ANHRHTLYSSGQIFFVTPRILIVDLLTQR-------LPTSNLAGLIILNTHALT 128 (715)
Q Consensus 82 ~~~R~~lY~~ggV~fvTprIL~~DLLs~r-------i~~~~ItgiVV~~AHr~~ 128 (715)
+.+|...|. .-|++.||-=|..|+|... +....+.-+|||||+++.
T Consensus 164 ~~~r~~~~~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 164 KDEKREAYA-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HHHHHHHHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred HHHHHHhcC-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 888888884 6899999999987777644 556888999999999976
No 79
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.10 E-value=0.011 Score=68.95 Aligned_cols=121 Identities=9% Similarity=-0.036 Sum_probs=75.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc----CCC
Q 005084 18 NGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS----SGQ 93 (715)
Q Consensus 18 ~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~----~gg 93 (715)
++.|++.|||-|||.. .+..+.....+ +++.|+..+..++.+.+...+ ..+..++|+... +-. ...
T Consensus 156 k~vlv~apTGSGKT~~--al~~l~~~~~g--l~l~PtR~LA~Qi~~~l~~~g-~~v~lltG~~~~-----iv~TpGr~~~ 225 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYH--AIQKYFSAKSG--VYCGPLKLLAHEIFEKSNAAG-VPCDLVTGEERV-----TVQPNGKQAS 225 (677)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHSSSE--EEEESSHHHHHHHHHHHHHTT-CCEEEECSSCEE-----CCSTTCCCCS
T ss_pred CEEEEEcCCCCCHHHH--HHHHHHhcCCe--EEEeCHHHHHHHHHHHHHhcC-CcEEEEECCeeE-----EecCCCcccc
Confidence 4789999999999952 22223322223 666888888877766665432 246677777543 111 144
Q ss_pred EEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcC-cCccEEeecCCC
Q 005084 94 IFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLN-REAYIRAFSDKP 156 (715)
Q Consensus 94 V~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSdsP 156 (715)
+++.|+..+. -...+..+||||||++.+..-..-+.+.+..-. +.-.+.++|++.
T Consensus 226 il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 226 HVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp EEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred eeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH
Confidence 7777775442 136789999999999966433333334444333 556788888873
No 80
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.72 E-value=0.11 Score=56.54 Aligned_cols=117 Identities=10% Similarity=0.100 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHH--hcCCCCEEEEecCCHhHHHH----HHHHhCCCCC-CCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLL--HSPSQGTLLLLSSSPNLKSQ----IIHYLAPNAP-LLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~--y~~~~~lVlvl~~t~~~~~~----i~~~L~~~~~-~~~~ 74 (715)
|.+||+.|+..+-.. .-.++..|++.|||.++|.++.+ ...++.-|++++++...... +...+...+. ..+.
T Consensus 164 L~p~Qk~il~~l~~~-R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~ 242 (385)
T 2o0j_A 164 LRDYQRDMLKIMSSK-RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPG 242 (385)
T ss_dssp CCHHHHHHHHHHHHS-SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSCC
T ss_pred CCHHHHHHHHhhccC-cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhhh
Confidence 578999999875322 25799999999999998887653 23456678888888876543 2222221111 0111
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCC
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTE 129 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~ 129 (715)
.... + ..+.. +..|+.+.+.+. .-+-+.|. .+.++|+||+|....
T Consensus 243 ~~~~--~-~~~I~-f~nGs~i~~lsa--~~~slrG~----~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 243 IVEW--N-KGSIE-LDNGSSIGAYAS--SPDAVRGN----SFAMIYIEDCAFIPN 287 (385)
T ss_dssp EEEE--C-SSEEE-ETTSCEEEEEEC--SHHHHHTS----CCSEEEEESGGGSTT
T ss_pred hccC--C-ccEEE-eCCCCEEEEEEC--CCCCccCC----CCCEEEechhhhcCC
Confidence 1110 1 11222 345666555554 34444553 357899999999864
No 81
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.36 E-value=0.86 Score=52.40 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeee-----
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEI----- 76 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~i----- 76 (715)
=+.|+..+..++..+ -.||.=|.|=|||.+++.++. +....+..||++++|...+..+.+.+...+.. +.-+
T Consensus 182 n~~Q~~av~~~l~~~-~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~-~~R~~~~~r 259 (624)
T 2gk6_A 182 NHSQVYAVKTVLQRP-LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK-VVRLCAKSR 259 (624)
T ss_dssp CHHHHHHHHHHHTCS-EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCC-EEECCCTGG
T ss_pred CHHHHHHHHHHhcCC-CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCe-EEeeccccc
Confidence 367999999988652 456666789999999988887 44435678999999998888877765432110 0000
Q ss_pred ----------------------------------cCCCChhh-----------HHHhhcCCCEEEECchHHHHHhhcCCC
Q 005084 77 ----------------------------------TADLPANH-----------RHTLYSSGQIFFVTPRILIVDLLTQRL 111 (715)
Q Consensus 77 ----------------------------------tge~~~~~-----------R~~lY~~ggV~fvTprIL~~DLLs~ri 111 (715)
.++.+... ...+.....|++.|........ +
T Consensus 260 ~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~----l 335 (624)
T 2gk6_A 260 EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR----L 335 (624)
T ss_dssp GSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGG----G
T ss_pred hhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchh----h
Confidence 01111111 1123457889999876554333 3
Q ss_pred CCCCeeEEEEecccccCC
Q 005084 112 PTSNLAGLIILNTHALTE 129 (715)
Q Consensus 112 ~~~~ItgiVV~~AHr~~~ 129 (715)
....+..||||||..++.
T Consensus 336 ~~~~fd~viIDEAsQ~~e 353 (624)
T 2gk6_A 336 AKMQFRSILIDESTQATE 353 (624)
T ss_dssp TTCCCSEEEETTGGGSCH
T ss_pred hcCCCCEEEEecccccCc
Confidence 345788999999988875
No 82
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=90.99 E-value=0.34 Score=55.42 Aligned_cols=143 Identities=11% Similarity=0.130 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHH--hcCCCCEEEEecCCHhHHHHH----HHHhCCCCC-CCCe
Q 005084 2 VLEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLL--HSPSQGTLLLLSSSPNLKSQI----IHYLAPNAP-LLPS 74 (715)
Q Consensus 2 lL~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~--y~~~~~lVlvl~~t~~~~~~i----~~~L~~~~~-~~~~ 74 (715)
+.+||+.|+..+- ...-.++..|+|.|||.++|.++.+ ...++.-|++++++......+ ...+...+. ..+.
T Consensus 164 l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~ 242 (592)
T 3cpe_A 164 LRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPG 242 (592)
T ss_dssp CCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSCC
T ss_pred CCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhccc
Confidence 4689999998762 2236789999999999999876652 234566788888888776443 333333211 0111
Q ss_pred eecCCCChhhHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEee
Q 005084 75 EITADLPANHRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAF 152 (715)
Q Consensus 75 ~itge~~~~~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAf 152 (715)
.... ...+ -.+..|+.+.+-+. --+=+.|. .+.++|+||+|..... .+.+ -.+.... .+.|.+..+
T Consensus 243 ~~~~---~~~~-i~~~nGs~i~~~s~--~~~~lrG~----~~~~~iiDE~~~~~~~-~~l~-~~~~~~l~~~~~~~ii~i 310 (592)
T 3cpe_A 243 IVEW---NKGS-IELDNGSSIGAYAS--SPDAVRGN----SFAMIYIEDCAFIPNF-HDSW-LAIQPVISSGRRSKIIIT 310 (592)
T ss_dssp EEEE---CSSE-EEETTSCEEEEEEC--CHHHHHHS----CCSEEEEETGGGCTTH-HHHH-HHHHHHHSSSSCCEEEEE
T ss_pred cccC---CccE-EEecCCCEEEEEeC--CCCCccCC----CcceEEEehhccCCch-hHHH-HHHHHHhccCCCceEEEE
Confidence 1100 1111 12345555443322 12223333 3578999999987552 1221 1222222 245666665
Q ss_pred cCCCcc
Q 005084 153 SDKPTA 158 (715)
Q Consensus 153 SdsP~s 158 (715)
| +|..
T Consensus 311 s-TP~~ 315 (592)
T 3cpe_A 311 T-TPNG 315 (592)
T ss_dssp E-CCCT
T ss_pred e-CCCC
Confidence 5 6654
No 83
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.71 Score=54.88 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCC---------
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLL--------- 72 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~--------- 72 (715)
-+.|++.+..++..+ -.||.=|.|=|||.+++.++. +...++..||++++|...+..+.+.|...+...
T Consensus 362 n~~Q~~Av~~~l~~~-~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~ 440 (802)
T 2xzl_A 362 NSSQSNAVSHVLQRP-LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSRE 440 (802)
T ss_dssp CHHHHHHHHHHTTCS-EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGT
T ss_pred CHHHHHHHHHHhcCC-CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchh
Confidence 368999999988652 468888999999999888876 433246789999999988877766553211000
Q ss_pred -----Ceee-----------------------cCCCChhh-----------HHHhhcCCCEEEECchHHHHHhhcCCCCC
Q 005084 73 -----PSEI-----------------------TADLPANH-----------RHTLYSSGQIFFVTPRILIVDLLTQRLPT 113 (715)
Q Consensus 73 -----~~~i-----------------------tge~~~~~-----------R~~lY~~ggV~fvTprIL~~DLLs~ri~~ 113 (715)
.... .++.+..+ ...+.....|++.|...+... ++.-
T Consensus 441 ~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~----~L~~ 516 (802)
T 2xzl_A 441 DVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDK----RLDT 516 (802)
T ss_dssp TSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCT----TCCS
T ss_pred hhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcChH----HHhc
Confidence 0000 01122211 123345788999987765432 3333
Q ss_pred CCeeEEEEecccccCC
Q 005084 114 SNLAGLIILNTHALTE 129 (715)
Q Consensus 114 ~~ItgiVV~~AHr~~~ 129 (715)
.+..||||||..+++
T Consensus 517 -~fd~viIDEA~q~~e 531 (802)
T 2xzl_A 517 -KFRTVLIDESTQASE 531 (802)
T ss_dssp -CCSEEEETTGGGSCH
T ss_pred -cCCEEEEECccccch
Confidence 788999999998875
No 84
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=88.06 E-value=1.3 Score=52.21 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=90.5
Q ss_pred hHHHHHHHHH-HhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHH-------HHHhCCCCCCCC
Q 005084 3 LEFHQHIIAE-LLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQI-------IHYLAPNAPLLP 73 (715)
Q Consensus 3 L~YQ~~I~~~-~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i-------~~~L~~~~~~~~ 73 (715)
-+|--|++.- +|.+ .-+.=|.||=||| ++|.|-. +..-.|.-|.|+.+++.++.+- -++|.. .+
T Consensus 75 r~~dvQligg~~L~~--G~iaEM~TGEGKT-Lva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl----sv 147 (822)
T 3jux_A 75 RPFDVQVMGGIALHE--GKVAEMKTGEGKT-LAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGL----RV 147 (822)
T ss_dssp CCCHHHHHHHHHHHT--TCEEECCTTSCHH-HHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTC----CE
T ss_pred CCcHHHHHHHHHHhC--CChhhccCCCCcc-HHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCC----EE
Confidence 4566677766 4666 7789999999999 5555554 4544577799999999988652 334433 23
Q ss_pred eeecC--------------------------------------------------CCChhhHHHhhcCCCEEEECchHHH
Q 005084 74 SEITA--------------------------------------------------DLPANHRHTLYSSGQIFFVTPRILI 103 (715)
Q Consensus 74 ~~itg--------------------------------------------------e~~~~~R~~lY~~ggV~fvTprIL~ 103 (715)
.+++. ++++.+|++.|.. -|...|..=+-
T Consensus 148 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~-DItYgTn~Efg 226 (822)
T 3jux_A 148 GVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLC-DVTYGTNNEFG 226 (822)
T ss_dssp EEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHS-SEEEEEHHHHH
T ss_pred EEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcC-CCEEccCcchh
Confidence 34443 5678899999975 79999999999
Q ss_pred HHhhcCCC--CCCC-----eeEEEEecccccCCCChHHHHHHHHHhcCcCccEE
Q 005084 104 VDLLTQRL--PTSN-----LAGLIILNTHALTENSTETFICRIIKSLNREAYIR 150 (715)
Q Consensus 104 ~DLLs~ri--~~~~-----ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIk 150 (715)
-|.|...+ ++++ .--.||||++.+.= ..+++|+|.
T Consensus 227 FDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLI------------DeArtPLiI 268 (822)
T 3jux_A 227 FDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLI------------DEARTPLII 268 (822)
T ss_dssp HHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHT------------TGGGSCEEE
T ss_pred hHhHHhhccCCHHHhccCCCCeEEEecccceee------------cCCCCCcee
Confidence 99998764 2233 34568899876543 345677775
No 85
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=87.45 E-value=1 Score=51.97 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEec-CCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAELLQEPNGGLVILS-SGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~-tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+.|++.+..+|... +-.+|.| .|=|||..++.++. +.. .+..||++++|..-+..+.+.|.
T Consensus 192 ~~Q~~AV~~al~~~-~~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQK-ELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCS-SEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcCchHHHHHHHHHHH
Confidence 57999999998752 4445555 99999999998888 444 36789999999988877766553
No 86
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.80 E-value=3.4 Score=49.06 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 3 LEFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 3 L~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
-+.|+..+..++.. .-.||.=|.|=|||.+++.++. +....+..||++++|...+..+.+.+.
T Consensus 358 n~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp CHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 36799999998865 1457777899999999998887 444356789999999988888877654
No 87
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.73 E-value=3.9 Score=46.87 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhc----CCCCEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHS----PSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~----~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+-|+..+..++.. ...++.=+.|=|||.+++.++.... ..+..|++++||.....++.+.+.
T Consensus 152 ~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 152 NWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp CHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 4588888888754 3666667999999998888877332 345679999999998888876654
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=85.99 E-value=0.69 Score=53.29 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=44.1
Q ss_pred hHHHHHHHHH---HhcCCCCeEEEecCCCCHHHHHHHHHH-Hh-cCCCCEEEEecCCHhHHHHHHHHh
Q 005084 3 LEFHQHIIAE---LLQEPNGGLVILSSGLSLPKLIASVLL-LH-SPSQGTLLLLSSSPNLKSQIIHYL 65 (715)
Q Consensus 3 L~YQ~~I~~~---~l~~~~d~LvVL~tGLG~~~Iva~ll~-~y-~~~~~lVlvl~~t~~~~~~i~~~L 65 (715)
-++|++++.. ++.++.+.++..|||-||| +++.+-. .+ ...+..|+++.+|..+.+|+.+.+
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT-~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKT-IMALKSALQYSSERKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHH-HHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHH-HHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHH
Confidence 4689998874 4555569999999999999 4333322 11 123568899999999988876655
No 89
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=82.54 E-value=2.7 Score=47.89 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChh
Q 005084 4 EFHQHIIAELLQEPNGGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPAN 83 (715)
Q Consensus 4 ~YQ~~I~~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~ 83 (715)
+-|++.+..++.. ...+|.=|.|=|||.++..++..+...+..|+++++|......+.+.+... ...|
T Consensus 192 ~~Q~~Av~~~~~~-~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~----a~Ti------- 259 (574)
T 3e1s_A 192 EEQASVLDQLAGH-RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT----ASTV------- 259 (574)
T ss_dssp HHHHHHHHHHTTC-SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC----EEEH-------
T ss_pred HHHHHHHHHHHhC-CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc----HHHH-------
Confidence 5788988888765 245555679999999999998866555778899999999888888766421 1111
Q ss_pred hHHHhhcCCCEEEECchHHHHHhhcCCCCCCCeeEEEEecccccCCC
Q 005084 84 HRHTLYSSGQIFFVTPRILIVDLLTQRLPTSNLAGLIILNTHALTEN 130 (715)
Q Consensus 84 ~R~~lY~~ggV~fvTprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~ 130 (715)
.|---|.. . .+..+.-.+-....||||||+.+...
T Consensus 260 h~ll~~~~-~-----------~~~~~~~~~~~~dvlIIDEasml~~~ 294 (574)
T 3e1s_A 260 HRLLGYGP-Q-----------GFRHNHLEPAPYDLLIVDEVSMMGDA 294 (574)
T ss_dssp HHHTTEET-T-----------EESCSSSSCCSCSEEEECCGGGCCHH
T ss_pred HHHHcCCc-c-----------hhhhhhcccccCCEEEEcCccCCCHH
Confidence 11000000 0 12223344556789999999988643
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.25 E-value=2.4 Score=39.96 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=31.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 379 EEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 379 Ee~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
++..|+..|.++|++ .+.+++||||++.++|..|.++|.
T Consensus 14 ~~~~K~~~L~~ll~~---------------------~~~~~~lVF~~~~~~~~~l~~~L~ 52 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDV---------------------LEFNQVVIFVKSVQRCIALAQLLV 52 (172)
T ss_dssp CGGGHHHHHHHHHHH---------------------SCCSSEEEECSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh---------------------CCCCcEEEEECCHHHHHHHHHHHH
Confidence 456799988888764 234689999999999999999884
No 91
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=76.77 E-value=2.1 Score=39.81 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=32.0
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 378 LEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 378 lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
..+..|+..|.++|++. +.+++||||++.++|..|.++|.
T Consensus 17 ~~~~~K~~~L~~ll~~~---------------------~~~~~lVF~~~~~~~~~l~~~L~ 56 (163)
T 2hjv_A 17 VREENKFSLLKDVLMTE---------------------NPDSCIIFCRTKEHVNQLTDELD 56 (163)
T ss_dssp CCGGGHHHHHHHHHHHH---------------------CCSSEEEECSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhc---------------------CCCcEEEEECCHHHHHHHHHHHH
Confidence 34567999998888651 23689999999999999998874
No 92
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.76 E-value=3.8 Score=44.95 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcC----CCCeEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEecCCHhHHHHHHHHhC
Q 005084 4 EFHQHIIAELLQE----PNGGLVILSSGLSLPKLIASVLLLH-SPSQGTLLLLSSSPNLKSQIIHYLA 66 (715)
Q Consensus 4 ~YQ~~I~~~~l~~----~~d~LvVL~tGLG~~~Iva~ll~~y-~~~~~lVlvl~~t~~~~~~i~~~L~ 66 (715)
+-|++++..++.. ....||.=|.|-|||.++..++... ......|+++.+|......+.+.+.
T Consensus 28 ~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~ 95 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSG 95 (459)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhc
Confidence 4688888876431 1256666788999999998888733 3222368888888887777776664
No 93
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=75.84 E-value=2.3 Score=40.78 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=32.5
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 378 LEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 378 lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
.++..|+..|.++|++. .+.+++||||++.++|..|.++|.
T Consensus 27 v~~~~K~~~L~~ll~~~--------------------~~~~k~lVF~~~~~~~~~l~~~L~ 67 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNAT--------------------GKDSLTLVFVETKKGADSLEDFLY 67 (185)
T ss_dssp CCGGGHHHHHHHHHHHC---------------------CCSCEEEEESCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhc--------------------CCCCeEEEEECCHHHHHHHHHHHH
Confidence 35667999988888752 245789999999999999998773
No 94
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.54 E-value=16 Score=37.48 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=27.5
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
....||+||+|.+.+.....++.+.+.....+..+.+.|+.|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 4467899999999844455556666655544555555555554
No 95
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.94 E-value=21 Score=36.80 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=24.9
Q ss_pred CeeEEEEecccccCCCC-hHHHHHHHHHhc-----CcCccEEeecCCC
Q 005084 115 NLAGLIILNTHALTENS-TETFICRIIKSL-----NREAYIRAFSDKP 156 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~-~eaFI~rlyr~~-----nk~gfIkAfSdsP 156 (715)
.-..||+||+|++.... ....+..+++.. +....+.+.|..|
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 35678999999997663 445556666643 2233455555555
No 96
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=71.57 E-value=3.4 Score=42.32 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=33.9
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 379 EEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 379 Ee~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
+..+|+..|.++|.++.. +..++||||++..++..|.++|.
T Consensus 93 ~~s~K~~~L~~ll~~~~~-------------------~~~kvlIFs~~~~~~~~l~~~L~ 133 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-------------------EGDKIAIFTQFVDMGKIIRNIIE 133 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-------------------TTCCEEEEESCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHh-------------------CCCeEEEEeccHHHHHHHHHHHH
Confidence 567899999999988642 23699999999999999988773
No 97
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=69.79 E-value=5 Score=37.21 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=30.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 380 EAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 380 e~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
+..|.+.|.+++++ .+.+++||||++.++|..|.+.|.
T Consensus 14 ~~~K~~~l~~ll~~---------------------~~~~~~lVF~~~~~~~~~l~~~L~ 51 (165)
T 1fuk_A 14 EEYKYECLTDLYDS---------------------ISVTQAVIFCNTRRKVEELTTKLR 51 (165)
T ss_dssp GGGHHHHHHHHHHH---------------------TTCSCEEEEESSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHh---------------------CCCCCEEEEECCHHHHHHHHHHHH
Confidence 34488888888765 234789999999999999998874
No 98
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=68.72 E-value=4 Score=38.29 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHh
Q 005084 416 DHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 416 ~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
+.+++||||++.++|..|.++|..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~ 56 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ 56 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH
Confidence 347999999999999999987743
No 99
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=63.36 E-value=6.1 Score=41.79 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.0
Q ss_pred CCeEEEecCCchhhhhh-hhhhccCCCCceeEEEEEecchhHHHHHHHHHHHHHh
Q 005084 643 PFVIVVYHPDMSFVRQI-EVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRRENG 696 (715)
Q Consensus 643 P~~IImYdpd~~FIR~i-EvY~A~~p~~~lrVYFm~Y~~SvEEQ~yL~~irrEK~ 696 (715)
=++||+|||..+...-+ .+-||.+.+. .+||.++..+++||..|....+||+-
T Consensus 438 ~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~~~~~~~k~~~ 491 (494)
T 1wp9_A 438 VDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYYWSSRQKEKI 491 (494)
T ss_dssp CCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHHHHHCC-----
T ss_pred CCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 37999999986654322 2455555554 99999999999999999999888764
No 100
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=56.26 E-value=1.2e+02 Score=27.86 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=27.3
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
.-..||+||+|.+.+.... .+.+++........+.+.|..|.
T Consensus 102 ~~~vliiDe~~~l~~~~~~-~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQA-ALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETGGGSCHHHHH-HHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeChhhcCHHHHH-HHHHHHHhcCCCCeEEEEeCChh
Confidence 3467899999999775544 34566655555555666666654
No 101
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=55.47 E-value=10 Score=36.84 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=30.0
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 380 EAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 380 e~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
..-|.+.|.++++. .+.+++||||++.++|..|.+.|.
T Consensus 15 ~~~k~~~l~~ll~~---------------------~~~~~~lVF~~~~~~~~~l~~~L~ 52 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV---------------------ASPDRAMVFTRTKAETEEIAQGLL 52 (212)
T ss_dssp TTSHHHHHHHHHHH---------------------HCCSCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHHHHHHHHHHHH
Confidence 35688888887753 234799999999999999999884
No 102
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.14 E-value=43 Score=34.38 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=22.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCC---CCEEEEecCC
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPS---QGTLLLLSSS 54 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~---~~lVlvl~~t 54 (715)
..+++=++|.|||.++-.+.....+. +..++.+++.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 45666688999998777776633211 3455556643
No 103
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=54.45 E-value=68 Score=32.70 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=23.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHh
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPN 56 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~ 56 (715)
.-|+.=|.|.|||.++-.+.......+.-++.+++...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 34555578999997666665533222445666666554
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.48 E-value=1e+02 Score=28.57 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=26.9
Q ss_pred eeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 116 LAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 116 ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
-..||+||+|.+....... +++.+........+.+.|..|..
T Consensus 127 ~~vlviDe~~~l~~~~~~~-l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNA-LLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SEEEEEETGGGSCHHHHHH-HHHHHHSCCTTEEEEEEESCGGG
T ss_pred ceEEEEECcccccHHHHHH-HHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999986544443 45666555455556666666653
No 105
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=50.88 E-value=65 Score=34.99 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=23.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHHh--cCCCCEEEEecCCHh
Q 005084 19 GGLVILSSGLSLPKLIASVLLLH--SPSQGTLLLLSSSPN 56 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y--~~~~~lVlvl~~t~~ 56 (715)
..|+.=|.|+|||.++-.+.... ..++..++.+++...
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 34555569999996665555522 223555666766554
No 106
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=49.25 E-value=1.6e+02 Score=27.00 Aligned_cols=133 Identities=9% Similarity=0.184 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCC--CEEEECchHHHH
Q 005084 30 LPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSG--QIFFVTPRILIV 104 (715)
Q Consensus 30 ~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~g--gV~fvTprIL~~ 104 (715)
+...+..++... +++.+||.-.+......+.+.|...+ ..+..++|+++..+|... +.+| .|+++|
T Consensus 21 K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT------ 91 (175)
T 2rb4_A 21 KYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASIIQRFRDGKEKVLITT------ 91 (175)
T ss_dssp HHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC------
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe------
Confidence 444444444432 35667777778888888888886532 357889999999998855 4444 677777
Q ss_pred HhhcCCCCCCCeeEEEEecccc--cCCCChHHHHHHHHHh--cCcCccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 105 DLLTQRLPTSNLAGLIILNTHA--LTENSTETFICRIIKS--LNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 105 DLLs~ri~~~~ItgiVV~~AHr--~~~~~~eaFI~rlyr~--~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
|++..=+++..+..+|...... ....+...|+-|.=|- .++.|.+.-|...+. ...+..+.+.|+..
T Consensus 92 ~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~-----~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 92 NVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE-----LPSLMKIQDHFNSS 162 (175)
T ss_dssp CSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG-----HHHHHHHHHHHTCC
T ss_pred cchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch-----HHHHHHHHHHhcCc
Confidence 7788889999999988665431 1114556665553221 124566666654333 35566777777654
No 107
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=48.57 E-value=1.4e+02 Score=30.88 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhcc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~ 194 (715)
.-..+||||||+++...+.++ ++..-+...+..+...|.+|..+ .. ++... ...+.+-|-...++..+|..
T Consensus 108 ~~kvviIdead~l~~~a~naL-Lk~lEep~~~~~~Il~t~~~~~l---~~---ti~SR--c~~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANAL-LKTLEEPPAETWFFLATREPERL---LA---TLRSR--CRLHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHH-HHHHTSCCTTEEEEEEESCGGGS---CH---HHHTT--SEEEECCCCCHHHHHHHHHH
T ss_pred CcEEEEECchhhcCHHHHHHH-HHHhcCCCCCeEEEEEeCChHhC---cH---HHhhc--ceeeeCCCCCHHHHHHHHHH
Confidence 456789999999988666654 44444333344445567777643 12 33332 34566666666677777754
No 108
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.08 E-value=1.8e+02 Score=33.26 Aligned_cols=105 Identities=16% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCC--CEEEECchHHHHHhhcCCCCCCCeeE
Q 005084 44 SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSG--QIFFVTPRILIVDLLTQRLPTSNLAG 118 (715)
Q Consensus 44 ~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~g--gV~fvTprIL~~DLLs~ri~~~~Itg 118 (715)
.+..|||.-.+....+.+.+.|...+ ..+..++|+++..+|.+. +..| .|+++| |++..=+++.+|..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT------~~l~~GlDip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI------NLLREGLDIPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES------CCCSTTCCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec------chhhCCcccCCCCE
Confidence 35678888888888888888886542 246778999999999988 5555 456665 57888899999999
Q ss_pred EEEecccccC-CCChHHHHHHHHHh-cCcCccEEeecCC
Q 005084 119 LIILNTHALT-ENSTETFICRIIKS-LNREAYIRAFSDK 155 (715)
Q Consensus 119 iVV~~AHr~~-~~~~eaFI~rlyr~-~nk~gfIkAfSds 155 (715)
+|+.+++..- ..+...+|=|.=|- ++..|.+.-|-+.
T Consensus 517 Vi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~ 555 (661)
T 2d7d_A 517 VAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADK 555 (661)
T ss_dssp EEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSS
T ss_pred EEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeC
Confidence 9999987643 34566676665553 2345666555443
No 109
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=47.82 E-value=1.1e+02 Score=28.90 Aligned_cols=99 Identities=15% Similarity=0.242 Sum_probs=63.5
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHHHHhhcCCCCCCCeeEE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILIVDLLTQRLPTSNLAGL 119 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~~DLLs~ri~~~~Itgi 119 (715)
++.+||.-.+....+.+.+.|...+ ..+..++|+++.++|.+.. .+| .|+++| |++..=+++..+..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT------~~~~~Gldi~~v~~V 126 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT------DVASKGLDFPAIQHV 126 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC------HHHHTTCCCCCCSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc------CchhcCCCcccCCEE
Confidence 3457777777777777777775422 2577899999999988654 333 566666 677778899999988
Q ss_pred EEecccccCCCChHHHHHHHHHhc--CcCccEEeecC
Q 005084 120 IILNTHALTENSTETFICRIIKSL--NREAYIRAFSD 154 (715)
Q Consensus 120 VV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSd 154 (715)
|.... +.+...|+-|.=|-. ++.|....|-.
T Consensus 127 I~~d~----p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 127 INYDM----PEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp EESSC----CSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred EEeCC----CCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 87653 345566665543322 22454444443
No 110
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=47.13 E-value=1.3e+02 Score=27.32 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=61.3
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCC--CEEE
Q 005084 22 VILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSG--QIFF 96 (715)
Q Consensus 22 vVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~g--gV~f 96 (715)
+.++..-.|...+..++..+. ++.+||.-.+....+.+.+.|...+ ..+..++|+++..+|.+. +.+| .|++
T Consensus 9 ~~~~~~~~K~~~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 85 (165)
T 1fuk_A 9 VNVEEEEYKYECLTDLYDSIS--VTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSGSSRILI 85 (165)
T ss_dssp EEEESGGGHHHHHHHHHHHTT--CSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EECCcchhHHHHHHHHHHhCC--CCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHcCCCEEEE
Confidence 334433335556666666443 3445555566666777777775422 357789999999998765 4444 5666
Q ss_pred ECchHHHHHhhcCCCCCCCeeEEEEecc
Q 005084 97 VTPRILIVDLLTQRLPTSNLAGLIILNT 124 (715)
Q Consensus 97 vTprIL~~DLLs~ri~~~~ItgiVV~~A 124 (715)
+| |.+..=+++..+..+|....
T Consensus 86 ~T------~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 86 ST------DLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp EE------GGGTTTCCCCSCSEEEESSC
T ss_pred Ec------ChhhcCCCcccCCEEEEeCC
Confidence 66 67888889999999887654
No 111
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=47.12 E-value=1.2e+02 Score=31.30 Aligned_cols=92 Identities=10% Similarity=0.153 Sum_probs=64.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc---C--CCEEEECc
Q 005084 25 SSGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS---S--GQIFFVTP 99 (715)
Q Consensus 25 ~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~---~--ggV~fvTp 99 (715)
.+.=.+...+..++..+. ++.+||.-.+....+.+.+.|... ......++|+++.++|..... + ..|+++|
T Consensus 10 ~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~-g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT- 85 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRL-GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT- 85 (300)
T ss_dssp CCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTT-TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-
Confidence 334456667778877665 344555556666777777777543 235778999999999886653 3 4488887
Q ss_pred hHHHHHhhcCCCCCCCeeEEEEeccc
Q 005084 100 RILIVDLLTQRLPTSNLAGLIILNTH 125 (715)
Q Consensus 100 rIL~~DLLs~ri~~~~ItgiVV~~AH 125 (715)
|++..-+++..|..+|-...+
T Consensus 86 -----~va~~Gidi~~v~~VI~~d~p 106 (300)
T 3i32_A 86 -----DVAARGLDIPQVDLVVHYRMP 106 (300)
T ss_dssp -----STTTCSTTCCCCSEEEESSCC
T ss_pred -----chhhcCccccceeEEEEcCCC
Confidence 788999999999988865543
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=46.17 E-value=78 Score=32.59 Aligned_cols=36 Identities=6% Similarity=0.049 Sum_probs=23.6
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCC-CCEEEEecCCH
Q 005084 20 GLVILSSGLSLPKLIASVLLLHSPS-QGTLLLLSSSP 55 (715)
Q Consensus 20 ~LvVL~tGLG~~~Iva~ll~~y~~~-~~lVlvl~~t~ 55 (715)
.+++=|.|.|||.++-.+.....+. +..++.+++.+
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 4555579999998877776644433 34566666543
No 113
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=45.73 E-value=17 Score=34.83 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=18.8
Q ss_pred CeEEEEeCChhhHHHHHHHHH
Q 005084 418 GIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 418 ~~vLI~~~~~~T~~qL~~~L~ 438 (715)
+++||||++..+|..|.++|.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~ 75 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLL 75 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHH
Confidence 589999999999999998873
No 114
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=44.64 E-value=2.4e+02 Score=28.80 Aligned_cols=144 Identities=11% Similarity=0.177 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc-----CCCEEEECchHHHH
Q 005084 30 LPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS-----SGQIFFVTPRILIV 104 (715)
Q Consensus 30 ~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~-----~ggV~fvTprIL~~ 104 (715)
+...+..++... .++.+||.-.+....+.+.+.|...+ .....++|.++.++|.+... +..|+++|
T Consensus 237 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T------ 307 (391)
T 1xti_A 237 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT------ 307 (391)
T ss_dssp HHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES------
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC------
Confidence 344445555433 35677777788888888877776432 24678999999999886654 35678777
Q ss_pred HhhcCCCCCCCeeEEEEecccccCCCChHHHHHHH---HHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEec
Q 005084 105 DLLTQRLPTSNLAGLIILNTHALTENSTETFICRI---IKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLW 181 (715)
Q Consensus 105 DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rl---yr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~ 181 (715)
|.+..=+++..+..+|....- .+...|+=+. .|. ++.|.+.-|..... ...-+..+.+.|.+.--++-
T Consensus 308 ~~~~~Gidi~~~~~Vi~~~~p----~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 378 (391)
T 1xti_A 308 NLFGRGMDIERVNIAFNYDMP----EDSDTYLHRVARAGRF-GTKGLAITFVSDEN----DAKILNDVQDRFEVNISELP 378 (391)
T ss_dssp CCCSSCBCCTTEEEEEESSCC----SSHHHHHHHHCBCSSS-CCCCEEEEEECSHH----HHHHHHHHHHHTTCCCEECC
T ss_pred ChhhcCCCcccCCEEEEeCCC----CCHHHHHHhcccccCC-CCceEEEEEEcccc----hHHHHHHHHHHhcCChhhCC
Confidence 678888899999988876653 3444454432 222 23455555544332 22335556666666654443
Q ss_pred cCCchhhhhhhc
Q 005084 182 PRFQVNVSEELE 193 (715)
Q Consensus 182 PRf~~~V~~~l~ 193 (715)
+. .++.++++
T Consensus 379 ~~--~~~~~~~~ 388 (391)
T 1xti_A 379 DE--IDISSYIE 388 (391)
T ss_dssp SC--CCGGGTSC
T ss_pred cc--ccHHHHhh
Confidence 32 44555553
No 115
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.17 E-value=54 Score=33.43 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=39.1
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELE 193 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~ 193 (715)
.-..|++||+|++......+ +.+.+.+......+...|..|..+ .. .+... ...+.+.|=...++...+.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~-Ll~~le~~~~~~~~il~~~~~~~l---~~---~l~sR--~~~i~~~~~~~~~~~~~l~ 202 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSA-LRRTMETYSGVTRFCLICNYVTRI---ID---PLASQ--CSKFRFKALDASNAIDRLR 202 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHH-HHHHHHHTTTTEEEEEEESCGGGS---CH---HHHHH--SEEEECCCCCHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHH-HHHHHHhcCCCceEEEEeCchhhC---cc---hhhcc--CceEEeCCCCHHHHHHHHH
Confidence 34678999999998765544 456666555444444566666532 12 22222 2245555555555555553
No 116
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=44.16 E-value=54 Score=34.18 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=16.3
Q ss_pred CeEEEe----cCCCCHHHHHHHHHH
Q 005084 19 GGLVIL----SSGLSLPKLIASVLL 39 (715)
Q Consensus 19 d~LvVL----~tGLG~~~Iva~ll~ 39 (715)
...+++ +.|.|||.++..+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 455556 799999988877776
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=42.84 E-value=44 Score=31.76 Aligned_cols=53 Identities=8% Similarity=0.165 Sum_probs=30.8
Q ss_pred CCeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccc-cCcchHHHHHH
Q 005084 114 SNLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMV-SGFAKTERIMK 171 (715)
Q Consensus 114 ~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~-~g~~~l~~vmk 171 (715)
.....|+|||||.+.+. ...++.++... +..-++-|.+.+ |. ..|......+.
T Consensus 75 ~~~dvviIDE~Q~~~~~-~~~~l~~l~~~-~~~Vi~~Gl~~~---f~~~~f~~~~~ll~ 128 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPS-LFEVVKDLLDR-GIDVFCAGLDLT---HKQNPFETTALLLS 128 (184)
T ss_dssp TTEEEEEECCGGGSCTT-HHHHHHHHHHT-TCEEEEEEESBC---TTSCBCHHHHHHHH
T ss_pred CCCCEEEEECcccCCHH-HHHHHHHHHHC-CCCEEEEeeccc---cccCCccchHHHHH
Confidence 35789999999998654 44455555544 544444566544 11 12455555554
No 118
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=48.73 E-value=5.2 Score=37.39 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 381 APKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 381 ~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
..|...|.++|++ .+.+++||||++.++|..|.++|..
T Consensus 15 ~~k~~~l~~ll~~---------------------~~~~~~iVF~~~~~~~~~l~~~L~~ 52 (170)
T 2yjt_D 15 EHKTALLVHLLKQ---------------------PEATRSIVFVRKRERVHELANWLRE 52 (170)
Confidence 5677777777654 2236899999999999999999854
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=42.34 E-value=1.1e+02 Score=31.61 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=22.0
Q ss_pred EEEEecccccCCCC-hHHHHHHHHHhcCcCccEEeecCCC
Q 005084 118 GLIILNTHALTENS-TETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 118 giVV~~AHr~~~~~-~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
.||+||+|++.... ...++..+.+.. ....|.+.|..+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 78999999997654 443244555443 333344444444
No 120
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=40.70 E-value=25 Score=36.45 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=31.0
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 380 EAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 380 e~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
..-|++.|.++++. ...+++||||++.++|..|.+.|..
T Consensus 12 ~~~K~~~L~~ll~~---------------------~~~~~~LVF~~t~~~~~~l~~~L~~ 50 (300)
T 3i32_A 12 VRGRLEVLSDLLYV---------------------ASPDRAMVFTRTKAETEEIAQGLLR 50 (300)
T ss_dssp SSSHHHHHHHHHHH---------------------HCCSSEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------------------cCCCCEEEEECCHHHHHHHHHHHHh
Confidence 35588888887754 1247999999999999999999954
No 121
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=40.58 E-value=27 Score=35.48 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCeEEEecCCchhhhhh----hhhhccCCCCceeEEEEEecchhHHHHHHHHHHHHH-hHHHHHHhcc
Q 005084 643 PFVIVVYHPDMSFVRQI----EVYKAENPSIKLKVYFLFYEDSTEVQKFKAGIRREN-GAFESLIRQK 705 (715)
Q Consensus 643 P~~IImYdpd~~FIR~i----EvY~A~~p~~~lrVYFm~Y~~SvEEQ~yL~~irrEK-~AFe~LIreK 705 (715)
-++||+|||.-..-.-+ -++|... ..++.||.++..+|+||.-|- +...| ..|+.+|...
T Consensus 184 a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq-~~~v~v~~li~~~TiEe~i~~--~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 184 ANRVIHFDRWWNPAVEDQATDRVYRIGQ-TRNVIVHKLISVGTLEEKIDQ--LLAFKRSLFKDIISSG 248 (271)
T ss_dssp CSEEEECSCCSCTTTC---------------CCEEEEEEETTSHHHHHHH--HHHHCHHHHTTGGGGT
T ss_pred CCEEEEECCCCChhHHHHHHHhccccCC-CCceEEEEEeeCCCHHHHHHH--HHHHHHHHHHHHHccC
Confidence 47889999875543221 1233322 247999999999999997554 33333 3455555543
No 122
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.40 E-value=53 Score=31.09 Aligned_cols=35 Identities=6% Similarity=-0.100 Sum_probs=20.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecC
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSS 53 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~ 53 (715)
.-|++=|.|-|||.++..+.......+..++.+++
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34555578999997777776633222334444444
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=39.17 E-value=3.3e+02 Score=27.82 Aligned_cols=106 Identities=9% Similarity=0.177 Sum_probs=68.5
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cC--CCEEEECchHHHHHhhcCCCCCCCeeEE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SS--GQIFFVTPRILIVDLLTQRLPTSNLAGL 119 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~--ggV~fvTprIL~~DLLs~ri~~~~Itgi 119 (715)
++.+||.-.+....+.+.+.|... ...+..++|+++.++|.++. .+ ..|+++| |++..=+++..+..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidip~~~~V 338 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT------NVCARGIDVEQVSVV 338 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC------GGGTSSCCCTTEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc------CccccCCCccCCCEE
Confidence 456777777888888887777543 23578899999999998665 44 4577777 678888999999998
Q ss_pred EEecccccCC--CChHHHHHHHHHhc--CcCccEEeecCCCc
Q 005084 120 IILNTHALTE--NSTETFICRIIKSL--NREAYIRAFSDKPT 157 (715)
Q Consensus 120 VV~~AHr~~~--~~~eaFI~rlyr~~--nk~gfIkAfSdsP~ 157 (715)
|....-.-.. .+...|+=|.=|-. ++.|.+.-|-+.+.
T Consensus 339 i~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 339 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp EESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 8555422111 34455554433321 34455555554443
No 124
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=38.08 E-value=71 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=25.1
Q ss_pred EEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCC
Q 005084 119 LIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKP 156 (715)
Q Consensus 119 iVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP 156 (715)
|++||.|++...-+ ..+++.+.....+..|.|-|..|
T Consensus 80 l~ldei~~l~~~~q-~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 80 LVLSHPEHLTREQQ-YHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp EEEECGGGSCHHHH-HHHHHHHHSSSCSSCEEEEESSC
T ss_pred EEEcChHHCCHHHH-HHHHHHHhhcCCCEEEEEECCcC
Confidence 68999999876544 44566666666566666666654
No 125
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=36.12 E-value=2.5e+02 Score=28.90 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc---C--CCEEEECchHHHHHhh
Q 005084 33 LIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS---S--GQIFFVTPRILIVDLL 107 (715)
Q Consensus 33 Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~---~--ggV~fvTprIL~~DLL 107 (715)
.+..++... ..++.+||.-.+....+.+.+.|...+ ..+..++|+++.++|.+... + ..|+++| |++
T Consensus 265 ~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT------~~~ 336 (417)
T 2i4i_A 265 FLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSGKSPILVAT------AVA 336 (417)
T ss_dssp HHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC------HHH
T ss_pred HHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC------Chh
Confidence 444444433 235667777788888888877775432 35778999999999886653 3 4677777 577
Q ss_pred cCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEeecCCCcccccCcchHHHHHHHhcc
Q 005084 108 TQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 108 s~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
..=+++.+|..+|.... +.+...|+-|.=|-. ++.|.+.-|-+. . +...+..+++.|..
T Consensus 337 ~~Gidip~v~~Vi~~~~----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~----~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 337 ARGLDISNVKHVINFDL----PSDIEEYVHRIGRTGRVGNLGLATSFFNE-R----NINITKDLLDLLVE 397 (417)
T ss_dssp HTTSCCCCEEEEEESSC----CSSHHHHHHHHTTBCC--CCEEEEEEECG-G----GGGGHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEEcC----CCCHHHHHHhcCccccCCCCceEEEEEcc-c----cHHHHHHHHHHHHH
Confidence 78889999998886543 345556654432221 233555555432 2 33445555555443
No 126
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=35.79 E-value=1.8e+02 Score=29.24 Aligned_cols=116 Identities=14% Similarity=0.257 Sum_probs=71.8
Q ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc---CC--CEEEECchHHHHHhhcCCCCCCCeeE
Q 005084 44 SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS---SG--QIFFVTPRILIVDLLTQRLPTSNLAG 118 (715)
Q Consensus 44 ~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~---~g--gV~fvTprIL~~DLLs~ri~~~~Itg 118 (715)
.+..+||.-.+....+.+.+.|...+ ..+..++|+++.++|.++.. +| .|+++| |++..=+++..+..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T------~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT------DVMSRGIDVNDLNC 309 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC------TTHHHHCCCSCCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC------ChhhcCCCcccCCE
Confidence 34556667777777777777775432 35778999999999886653 33 577777 45555677888888
Q ss_pred EEEecccccCCCChHHHHHHHHHh--cCcCccEEeecCCCcccccCcchHHHHHHHhcc
Q 005084 119 LIILNTHALTENSTETFICRIIKS--LNREAYIRAFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 119 iVV~~AHr~~~~~~eaFI~rlyr~--~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
+|.... +.+...|+-+.=|- .++.|.+..|-+.. ++..++.+.+.++.
T Consensus 310 Vi~~~~----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-----~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 310 VINYHL----PQNPESYMHRIGRTGRAGKKGKAISIINRR-----EYKKLRYIERAMKL 359 (367)
T ss_dssp EEESSC----CSCHHHHHHHSTTTCCSSSCCEEEEEECTT-----SHHHHHHHHHHHTC
T ss_pred EEEecC----CCCHHHhhhcccccccCCCccEEEEEEcHH-----HHHHHHHHHHHhCC
Confidence 876543 33445554443221 12345555555432 45667676666654
No 127
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=35.56 E-value=3.1e+02 Score=31.33 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCCC--EEEECchHHHHHhhcCCCCCCCeeE
Q 005084 44 SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSGQ--IFFVTPRILIVDLLTQRLPTSNLAG 118 (715)
Q Consensus 44 ~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~gg--V~fvTprIL~~DLLs~ri~~~~Itg 118 (715)
.+..|||.-.+....+.+.+.|...+ ..+..++|+++..+|.++ +..|. |+++| |++..=+++.+|..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT------~~l~~GlDip~v~l 510 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI------NLLREGLDIPEVSL 510 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES------CCCCTTCCCTTEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc------ChhhcCccCCCCCE
Confidence 35678888888888888888776543 246678999999999988 66663 45554 67788899999999
Q ss_pred EEEecccccC-CCChHHHHHHHHHh-cCcCccEEeecC
Q 005084 119 LIILNTHALT-ENSTETFICRIIKS-LNREAYIRAFSD 154 (715)
Q Consensus 119 iVV~~AHr~~-~~~~eaFI~rlyr~-~nk~gfIkAfSd 154 (715)
+|+.+++..- ..+...||-+.=|- ++..|.+.-|.+
T Consensus 511 VI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~ 548 (664)
T 1c4o_A 511 VAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYAD 548 (664)
T ss_dssp EEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred EEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEc
Confidence 9999986542 33555665554433 123455555543
No 128
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=35.44 E-value=2.5e+02 Score=25.32 Aligned_cols=130 Identities=12% Similarity=0.159 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCC--CEEEECchHHH
Q 005084 29 SLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSG--QIFFVTPRILI 103 (715)
Q Consensus 29 G~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~g--gV~fvTprIL~ 103 (715)
.+...+..++.... ++.+||.-.+......+.+.|...+ ..+..++|+++..+|... |.+| .|+++|
T Consensus 21 ~K~~~L~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T----- 92 (163)
T 2hjv_A 21 NKFSLLKDVLMTEN--PDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT----- 92 (163)
T ss_dssp GHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----
T ss_pred HHHHHHHHHHHhcC--CCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----
Confidence 34445556655433 3345555667777777777775432 357789999999998865 4444 466666
Q ss_pred HHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEeecCCCcccccCcchHHHHHHHhccC
Q 005084 104 VDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAFSDKPTAMVSGFAKTERIMKSLFIR 176 (715)
Q Consensus 104 ~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~ 176 (715)
|++..=+++..+..+|.... +.+...|+-+.=|-. ++.|.+..|.... +...+..+.+.++.+
T Consensus 93 -~~~~~Gld~~~~~~Vi~~~~----p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-----~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 93 -DVAARGIDIENISLVINYDL----PLEKESYVHRTGRTGRAGNKGKAISFVTAF-----EKRFLADIEEYIGFE 157 (163)
T ss_dssp -GGGTTTCCCSCCSEEEESSC----CSSHHHHHHHTTTSSCTTCCEEEEEEECGG-----GHHHHHHHHHHHTSC
T ss_pred -ChhhcCCchhcCCEEEEeCC----CCCHHHHHHhccccCcCCCCceEEEEecHH-----HHHHHHHHHHHHCCC
Confidence 67888889999999887664 445556655543321 2345555554322 234555555555543
No 129
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=35.36 E-value=38 Score=39.79 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=35.7
Q ss_pred hhhcccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 375 EEVLEEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 375 ~~~lEe~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
.......+|+..|.++|.++. ..+.+|||||++.+++..|.++|.
T Consensus 549 ~~l~~~s~K~~~L~~lL~~~~-------------------~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 549 RGLIMSSGKMVLLDQLLTRLK-------------------KDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHTCHHHHHHHHHHHHHT-------------------TTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHhhhcChHHHHHHHHHHHHh-------------------hCCCeEEEEechHHHHHHHHHHHH
Confidence 344567899999999998753 234699999999999998888773
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.33 E-value=94 Score=31.79 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=28.3
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTA 158 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~s 158 (715)
.-..+|+||+|.+.... ...+.+.+.+..+...+...|..|..
T Consensus 134 ~~~vlilDE~~~L~~~~-~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDA-QAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCEEEEEECTTSSCHHH-HHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCeEEEEeCccccCHHH-HHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 44678999999965443 34456777665555556666777764
No 131
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=32.11 E-value=51 Score=37.71 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.8
Q ss_pred CCeEEEecCCchhhhhhh-hhhccCCC--CceeEEEEEecchhHHHHHHHHHHHH
Q 005084 643 PFVIVVYHPDMSFVRQIE-VYKAENPS--IKLKVYFLFYEDSTEVQKFKAGIRRE 694 (715)
Q Consensus 643 P~~IImYdpd~~FIR~iE-vY~A~~p~--~~lrVYFm~Y~~SvEEQ~yL~~irrE 694 (715)
-++||+|||.-.....+- +=|+.+.| .++.||-++..+|+||.-|-...+|.
T Consensus 488 a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~ 542 (644)
T 1z3i_X 488 ANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKK 542 (644)
T ss_dssp EEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHH
Confidence 368999999855443221 22333333 57999999999999999886665554
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=31.45 E-value=32 Score=31.03 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=16.2
Q ss_pred CeEEEecCCCCHHHHHHHHHH
Q 005084 19 GGLVILSSGLSLPKLIASVLL 39 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~ 39 (715)
+.|++=+.|-|||.++..+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 456666789999988877776
No 133
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=30.97 E-value=2.6e+02 Score=28.39 Aligned_cols=106 Identities=16% Similarity=0.299 Sum_probs=67.8
Q ss_pred CCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHHHHhhcCCCCCCCeeEE
Q 005084 45 QGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILIVDLLTQRLPTSNLAGL 119 (715)
Q Consensus 45 ~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~~DLLs~ri~~~~Itgi 119 (715)
++.+||.-.+....+.+.+.|... ...+..++|+++.++|.++. .+| .|+++| |++..=+++..+..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidip~~~~V 315 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT------NVLARGIDIPTVSMV 315 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC------GGGSSSCCCTTEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC------ChhhcCCCcccCCEE
Confidence 466777777777777777777543 23578899999999988664 344 577777 577888999999999
Q ss_pred EEecccccCC--CChHHHHHHHHHh--cCcCccEEeecCCCc
Q 005084 120 IILNTHALTE--NSTETFICRIIKS--LNREAYIRAFSDKPT 157 (715)
Q Consensus 120 VV~~AHr~~~--~~~eaFI~rlyr~--~nk~gfIkAfSdsP~ 157 (715)
|....-.... .+...|+=+.=|- .++.|....|...+.
T Consensus 316 i~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 316 VNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp EESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 8776654221 1344444333221 123455555554443
No 134
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=29.57 E-value=51 Score=34.21 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.0
Q ss_pred CCCeEEEEeCChhhHHHHHHHHH
Q 005084 416 DHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 416 ~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
..+++||||++.++|..|.++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~ 279 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKIT 279 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEecHHHHHHHHHHHH
Confidence 44799999999999999998874
No 135
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.31 E-value=1.3e+02 Score=28.18 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchH
Q 005084 27 GLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRI 101 (715)
Q Consensus 27 GLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprI 101 (715)
.=.|...+..++..+. +++.+||.-.+......+.+.|...+ ..+..++|+++..+|.+.. .+| .|+++|
T Consensus 29 ~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT--- 103 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSGKSPILVAT--- 103 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------CHHHHHHHHTSSSEEEEE---
T ss_pred cHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc---
Confidence 3456666666766543 34455666666777777777775422 3577899999888877543 333 466666
Q ss_pred HHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhc--CcCccEEeecCCCcccccCcchHHHHHHHhcc
Q 005084 102 LIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSL--NREAYIRAFSDKPTAMVSGFAKTERIMKSLFI 175 (715)
Q Consensus 102 L~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~--nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I 175 (715)
|++..=+++..+..+|.... +.+...|+-+.=|-. ++.|.+.-|.... +...+..+.+.|..
T Consensus 104 ---~~~~~Gldi~~~~~VI~~d~----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-----~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 104 ---AVAARGLDISNVKHVINFDL----PSDIEEYVHRIGRTGRVGNLGLATSFFNER-----NINITKDLLDLLVE 167 (185)
T ss_dssp ---C------CCCSBSEEEESSC----CSSHHHHHHHHTTBCCTTSCEEEEEEECGG-----GGGGHHHHHHHHHH
T ss_pred ---ChhhcCCCcccCCEEEEeCC----CCCHHHHHHHccccCCCCCCcEEEEEEchh-----hHHHHHHHHHHHHh
Confidence 56676778888998876554 334555655543321 2345544444322 23344455554443
No 136
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=28.23 E-value=35 Score=36.17 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=31.1
Q ss_pred hhhcCCCeEEEecCCchhhhh-hh-hhhccC----CCCceeEEEEEecchhHHHH
Q 005084 638 LDILKPFVIVVYHPDMSFVRQ-IE-VYKAEN----PSIKLKVYFLFYEDSTEVQK 686 (715)
Q Consensus 638 L~el~P~~IImYdpd~~FIR~-iE-vY~A~~----p~~~lrVYFm~Y~~SvEEQ~ 686 (715)
+.-..++.||+||||.--==- |+ +-||.+ .+.++.||=++=.+|+||-.
T Consensus 189 ~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 189 KSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp CCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred ccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 445678999999987543211 22 333333 35799999999999999953
No 137
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=27.81 E-value=4e+02 Score=27.34 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhc-----CCCEEEECchHHHH
Q 005084 30 LPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYS-----SGQIFFVTPRILIV 104 (715)
Q Consensus 30 ~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~-----~ggV~fvTprIL~~ 104 (715)
+...+..++.... .+.+||.-.+....+.+.+.|...+ ..+..++|+++..+|.++.. +..|+++|
T Consensus 263 k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T------ 333 (410)
T 2j0s_A 263 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESIMKEFRSGASRVLIST------ 333 (410)
T ss_dssp HHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC------
T ss_pred HHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC------
Confidence 4444555554332 3456666677777777777775432 35788999999999987654 34677777
Q ss_pred HhhcCCCCCCCeeEEEEecccccCCCChHHHHHH
Q 005084 105 DLLTQRLPTSNLAGLIILNTHALTENSTETFICR 138 (715)
Q Consensus 105 DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~r 138 (715)
|++..=+++..+..+|.... +.+...|+=|
T Consensus 334 ~~~~~Gidi~~v~~Vi~~~~----p~s~~~~~Qr 363 (410)
T 2j0s_A 334 DVWARGLDVPQVSLIINYDL----PNNRELYIHR 363 (410)
T ss_dssp GGGSSSCCCTTEEEEEESSC----CSSHHHHHHH
T ss_pred ChhhCcCCcccCCEEEEECC----CCCHHHHHHh
Confidence 57888899999999886553 3444555444
No 138
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=27.12 E-value=94 Score=32.07 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=44.0
Q ss_pred CeeEEEEecccccCCCChHHHHHHHHHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCeeEeccCCchhhhhhhcc
Q 005084 115 NLAGLIILNTHALTENSTETFICRIIKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRKLHLWPRFQVNVSEELER 194 (715)
Q Consensus 115 ~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~v~l~PRf~~~V~~~l~~ 194 (715)
.-..+||||||+.+...+.++ ++..-+..++-.+...|.+|..+ +..+... .+.+.|--..++...|..
T Consensus 82 ~~kvviIdead~lt~~a~naL-Lk~LEep~~~t~fIl~t~~~~kl------~~tI~SR----~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAF-LKALEEPPEYAVIVLNTRRWHYL------LPTIKSR----VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHT-HHHHHSCCTTEEEEEEESCGGGS------CHHHHTT----SEEEECCCCHHHHHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHH-HHHHhCCCCCeEEEEEECChHhC------hHHHHce----eEeCCCCCHHHHHHHHHH
Confidence 457789999999998766653 34443333333333446777643 2344444 778888888888888854
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=27.10 E-value=70 Score=29.19 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=18.2
Q ss_pred CeEEEe-cCCCCHHHHHHHHHHHhcCCC
Q 005084 19 GGLVIL-SSGLSLPKLIASVLLLHSPSQ 45 (715)
Q Consensus 19 d~LvVL-~tGLG~~~Iva~ll~~y~~~~ 45 (715)
..++++ |.|-|||.++..+...+.+.|
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 445555 599999987777776554433
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.96 E-value=2.8e+02 Score=30.19 Aligned_cols=118 Identities=7% Similarity=-0.025 Sum_probs=61.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCCH---hHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 21 LVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSSP---NLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 21 LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~---~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
++|=+.|-|||.++++|..++...+..|+++.+.. ...+++...-... .+.+.+.....
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~---gv~~~~~~~~~--------------- 162 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQI---GVQVYGEPNNQ--------------- 162 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTT---TCCEECCTTCS---------------
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhc---CCceeeccccC---------------
Confidence 34446799999999999987766677787776442 3334443222211 12222221110
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccC--C-CChHHHHHHHHHhcCcCccEEeecCCCc
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALT--E-NSTETFICRIIKSLNREAYIRAFSDKPT 157 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~--~-~~~eaFI~rlyr~~nk~gfIkAfSdsP~ 157 (715)
.|.-+..+.+. .+..+....+|||.|-+.. . ...-.-+..+.+..++.+.++.+++.-+
T Consensus 163 dp~~i~~~al~-~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 163 NPIEIAKKGVD-IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp CHHHHHHHHHH-HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred CHHHHHHHHHH-HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 01111111111 1122355677999997754 2 2223344455666677777777777655
No 141
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=25.47 E-value=43 Score=36.39 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=37.5
Q ss_pred CCeEEEecCCchhhhhhh-hhhccC--CCCceeEEEEEecchhHHHHHHHHHHHHHhHHHHHHhccc
Q 005084 643 PFVIVVYHPDMSFVRQIE-VYKAEN--PSIKLKVYFLFYEDSTEVQKFKAGIRRENGAFESLIRQKS 706 (715)
Q Consensus 643 P~~IImYdpd~~FIR~iE-vY~A~~--p~~~lrVYFm~Y~~SvEEQ~yL~~irrEK~AFe~LIreKa 706 (715)
-++||+|||..+...-+- +-|+.+ +..++.||.++..+|+||.-|-..-+| +..|+.++....
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K-~~l~~~~~~~~~ 478 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK-RSLFKDIISSGD 478 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTC-SSSSSSGGGSTT
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHH-HHHHHHHhhcCc
Confidence 367888988755433221 223333 245799999999999998765543333 344555555443
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=25.17 E-value=1.4e+02 Score=27.28 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=22.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEecCCH
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHS-PSQGTLLLLSSSP 55 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~-~~~~lVlvl~~t~ 55 (715)
..+++=|.|-|||.++..+..... ..|..|+.++...
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 334444689999988877777543 2343444454433
No 143
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=24.94 E-value=1.6e+02 Score=31.22 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=53.1
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhhcCCCEEEE
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSP-SQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLYSSGQIFFV 97 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~-~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY~~ggV~fv 97 (715)
+-|+.=.+|-||+ .+|..+|.+++ ..+-.+.+|+...-...+...|-.+ ....+||......-.--...||+
T Consensus 162 ~vli~Ge~GtGK~-~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~---~~g~~tga~~~~~g~~~~a~~gt--- 234 (387)
T 1ny5_A 162 PVLITGESGVGKE-VVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY---EKGAFTGAVSSKEGFFELADGGT--- 234 (387)
T ss_dssp CEEEECSTTSSHH-HHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB---CTTSSTTCCSCBCCHHHHTTTSE---
T ss_pred CeEEecCCCcCHH-HHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC---CCCCCCCcccccCCceeeCCCcE---
Confidence 4567778999999 78888885543 2344555666654344444444221 12234565443222222345664
Q ss_pred CchHHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHh
Q 005084 98 TPRILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRIIKS 142 (715)
Q Consensus 98 TprIL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~ 142 (715)
+++||.|.+...-+ +-+++...+
T Consensus 235 ---------------------lfldei~~l~~~~q-~~Ll~~l~~ 257 (387)
T 1ny5_A 235 ---------------------LFLDEIGELSLEAQ-AKLLRVIES 257 (387)
T ss_dssp ---------------------EEEESGGGCCHHHH-HHHHHHHHH
T ss_pred ---------------------EEEcChhhCCHHHH-HHHHHHHhc
Confidence 46799998865433 444665544
No 144
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=24.94 E-value=73 Score=38.00 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 381 APKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 381 ~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.-||.+|.+.+.+.. ....+|||||++...|..|.+.|..
T Consensus 424 ~~K~~al~~~i~~~~-------------------~~gqpvLVft~sie~se~Ls~~L~~ 463 (853)
T 2fsf_A 424 AEKIQAIIEDIKERT-------------------AKGQPVLVGTISIEKSELVSNELTK 463 (853)
T ss_dssp HHHHHHHHHHHHHHH-------------------TTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------------------cCCCCEEEEECcHHHHHHHHHHHHH
Confidence 348888887776532 2235899999999999999999954
No 145
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=24.14 E-value=4.1e+02 Score=28.54 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHH-HhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHh---hcCC--CEEEECchHHHHHh
Q 005084 33 LIASVLL-LHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTL---YSSG--QIFFVTPRILIVDL 106 (715)
Q Consensus 33 Iva~ll~-~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~l---Y~~g--gV~fvTprIL~~DL 106 (715)
.++.++. .....+..+++.+. ......+.+.|.... ..+..++|+++.++|.++ |.+| .|+++|++++..
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-- 410 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-- 410 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH--
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc--
Confidence 3444444 33333444444444 444455777776532 267889999999998764 3344 578888677654
Q ss_pred hcCCCCCCCeeEEEEecccccCCCChHHHHHHHHHhcCc--CccEEeecC
Q 005084 107 LTQRLPTSNLAGLIILNTHALTENSTETFICRIIKSLNR--EAYIRAFSD 154 (715)
Q Consensus 107 Ls~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rlyr~~nk--~gfIkAfSd 154 (715)
=+++..+..+|+..+..-.. .-.--+-|..|.... ...|.-|.+
T Consensus 411 ---GiDip~v~~vi~~~~~~s~~-~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 411 ---GISVKNLHHVVLAHGVKSKI-IVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp ---SCCCCSEEEEEESSCCCSCC-HHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred ---ccccccCcEEEEeCCCCCHH-HHHHHHhcccccCCCCceEEEEEeec
Confidence 45888899999888763222 223345667775543 244444444
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=24.00 E-value=4.7e+02 Score=25.73 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=20.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecCC
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSPSQGTLLLLSSS 54 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~~~~lVlvl~~t 54 (715)
.-|++=|+|-|||.++-.+.......++-++.++++
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 457777899999955555544332223334444443
No 147
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=23.95 E-value=83 Score=37.23 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=31.9
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 380 EAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 380 e~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
+.-||.+|.+.+.+.... ..+|||||++...|..|.+.|..
T Consensus 456 ~~eK~~al~~~I~~~~~~-------------------gqpVLVFt~S~e~sE~Ls~~L~~ 496 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKK-------------------GQPVLVGTTSIEKSELLSSMLKK 496 (822)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------TCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhC-------------------CCCEEEEECCHHHHHHHHHHHHH
Confidence 345888888877764321 25899999999999999999964
No 148
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=23.78 E-value=81 Score=37.60 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 381 APKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 381 ~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
.-||.+|.+.+.+.... ..+|||||++..+|..|.+.|..
T Consensus 415 ~~K~~al~~~i~~~~~~-------------------~~pvLVft~s~~~se~Ls~~L~~ 454 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMT-------------------GQPVLVGTVAVETSELISKLLKN 454 (844)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------TCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc-------------------CCcEEEEECCHHHHHHHHHHHHH
Confidence 34888888777654211 25799999999999999999964
No 149
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.42 E-value=1.2e+02 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=22.5
Q ss_pred EEEecccccCCCChHHHHHHHHHhcC-cCccEEeecC-CCc
Q 005084 119 LIILNTHALTENSTETFICRIIKSLN-REAYIRAFSD-KPT 157 (715)
Q Consensus 119 iVV~~AHr~~~~~~eaFI~rlyr~~n-k~gfIkAfSd-sP~ 157 (715)
+++||.|.+...-+.. +++.+.+.. ....|.+-|. .|.
T Consensus 79 l~lDei~~l~~~~q~~-Ll~~l~~~~~~~~~iI~~tn~~~~ 118 (143)
T 3co5_A 79 LYVGDIAQYSRNIQTG-ITFIIGKAERCRVRVIASCSYAAG 118 (143)
T ss_dssp EEEEECTTCCHHHHHH-HHHHHHHHTTTTCEEEEEEEECTT
T ss_pred EEEeChHHCCHHHHHH-HHHHHHhCCCCCEEEEEecCCCHH
Confidence 6799999997765544 456655542 3344444444 444
No 150
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=23.10 E-value=1.6e+02 Score=28.71 Aligned_cols=45 Identities=29% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHhcCCCCeEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEecCCHh
Q 005084 11 AELLQEPNGGLVILSSGLSLPKLIASVLLLHSP-SQGTLLLLSSSPN 56 (715)
Q Consensus 11 ~~~l~~~~d~LvVL~tGLG~~~Iva~ll~~y~~-~~~lVlvl~~t~~ 56 (715)
..+...+.+-|++=++|-||| .+|..++.+.+ .+.-++.++++..
T Consensus 23 ~~~~~~~~~vll~G~~GtGKt-~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 23 SHLAPLDKPVLIIGERGTGKE-LIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp HHHTTSCSCEEEECCTTSCHH-HHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred HHHhCCCCCEEEECCCCCcHH-HHHHHHHHhcCccCCCeEEEecCCC
Confidence 333333335666678999999 55655553332 2334555666553
No 151
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=22.69 E-value=87 Score=32.87 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=30.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcchhhhhccCCCCCCCeEEEEeCChhhHHHHHHHHH
Q 005084 379 EEAPKWKVLREVLEEIEEERLKQASSREEVLLDGEENDHGIVLVACKDECSCMQLEDCIR 438 (715)
Q Consensus 379 Ee~PKW~~L~eiL~eI~~e~~~~~~~~~~~~~~~~~~~~~~vLI~~~~~~T~~qL~~~L~ 438 (715)
...+|+..|.++|++. + +++||||++..+|..|.++|.
T Consensus 236 ~~~~~~~~l~~~l~~~--------------------~--~~~lVF~~~~~~~~~l~~~L~ 273 (414)
T 3oiy_A 236 ISSRSKEKLVELLEIF--------------------R--DGILIFAQTEEEGKELYEYLK 273 (414)
T ss_dssp ESSCCHHHHHHHHHHH--------------------C--SSEEEEESSHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHc--------------------C--CCEEEEECCHHHHHHHHHHHH
Confidence 3448999988887761 1 689999999999999998884
No 152
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=21.16 E-value=1.2e+02 Score=33.78 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCCCeEEEEeCChhhHHHHHHHHHh
Q 005084 415 NDHGIVLVACKDECSCMQLEDCIRN 439 (715)
Q Consensus 415 ~~~~~vLI~~~~~~T~~qL~~~L~~ 439 (715)
...+++||||++.++|..|.+.|..
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~ 461 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNN 461 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHH
Confidence 3457999999999999999998853
No 153
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=20.97 E-value=4.7e+02 Score=23.75 Aligned_cols=131 Identities=10% Similarity=0.143 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCC--CEEEECchHHH
Q 005084 29 SLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSG--QIFFVTPRILI 103 (715)
Q Consensus 29 G~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~g--gV~fvTprIL~ 103 (715)
.+...+..++... +++.+||.-.+......+.+.|...+ ..+..++|+++..+|.... .+| .|+++|
T Consensus 17 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT----- 88 (172)
T 1t5i_A 17 EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT----- 88 (172)
T ss_dssp GHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----
T ss_pred HHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----
Confidence 3444555555533 23445666666777777777775432 3577899999999988654 344 566666
Q ss_pred HHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHH---HHhcCcCccEEeecCCCcccccCcchHHHHHHHhccCe
Q 005084 104 VDLLTQRLPTSNLAGLIILNTHALTENSTETFICRI---IKSLNREAYIRAFSDKPTAMVSGFAKTERIMKSLFIRK 177 (715)
Q Consensus 104 ~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rl---yr~~nk~gfIkAfSdsP~sf~~g~~~l~~vmk~L~I~~ 177 (715)
|++..=+++..+..+|..... .+...|+-+. .|.. +.|.+.-|..... +...+..+.+.+.+.-
T Consensus 89 -~~~~~Gldi~~~~~Vi~~d~p----~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~----~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 89 -NLFGRGMDIERVNIAFNYDMP----EDSDTYLHRVARAGRFG-TKGLAITFVSDEN----DAKILNDVQDRFEVNI 155 (172)
T ss_dssp -SCCSTTCCGGGCSEEEESSCC----SSHHHHHHHHHHHTGGG-CCCEEEEEECSHH----HHHHHHHHHHHHCCCE
T ss_pred -CchhcCcchhhCCEEEEECCC----CCHHHHHHHhcccccCC-CCcEEEEEEcChh----HHHHHHHHHHHHhcch
Confidence 567888899999998876643 3455555443 3333 3465555554332 2234555556565543
No 154
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=20.64 E-value=1.7e+02 Score=29.81 Aligned_cols=46 Identities=26% Similarity=0.172 Sum_probs=25.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEecCCHhHHHHHHHHh
Q 005084 19 GGLVILSSGLSLPKLIASVLLLHSP-SQGTLLLLSSSPNLKSQIIHYL 65 (715)
Q Consensus 19 d~LvVL~tGLG~~~Iva~ll~~y~~-~~~lVlvl~~t~~~~~~i~~~L 65 (715)
+.|++=++|-||| .+|..++.+.+ .+.-++.+|+...-...+...|
T Consensus 27 ~vLi~Ge~GtGKt-~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~l 73 (304)
T 1ojl_A 27 TVLIHGDSGTGKE-LVARALHACSARSDRPLVTLNCAALNESLLESEL 73 (304)
T ss_dssp CEEEESCTTSCHH-HHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHH
T ss_pred cEEEECCCCchHH-HHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHh
Confidence 5666667999999 66666664432 2333444555443223343333
No 155
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=20.23 E-value=5.5e+02 Score=24.22 Aligned_cols=101 Identities=13% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecCCHhHHHHHHHHhCCCCCCCCeeecCCCChhhHHHhh---cCCC--EEEECch
Q 005084 26 SGLSLPKLIASVLLLHSPSQGTLLLLSSSPNLKSQIIHYLAPNAPLLPSEITADLPANHRHTLY---SSGQ--IFFVTPR 100 (715)
Q Consensus 26 tGLG~~~Iva~ll~~y~~~~~lVlvl~~t~~~~~~i~~~L~~~~~~~~~~itge~~~~~R~~lY---~~gg--V~fvTpr 100 (715)
.--.+...+..++..+. ++.+||.-++....+.+.+.|...+ .....++|+++.++|.+.. .+|. |+++|
T Consensus 14 ~~~~k~~~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-- 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-- 88 (212)
T ss_dssp CTTSHHHHHHHHHHHHC--CSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC--
T ss_pred CHHHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec--
Confidence 33456667777776554 3445555566666777766664321 2577899999999998665 4554 77777
Q ss_pred HHHHHhhcCCCCCCCeeEEEEecccccCCCChHHHHHHH
Q 005084 101 ILIVDLLTQRLPTSNLAGLIILNTHALTENSTETFICRI 139 (715)
Q Consensus 101 IL~~DLLs~ri~~~~ItgiVV~~AHr~~~~~~eaFI~rl 139 (715)
|++..-+++..|..+|.... +.+...|+-|.
T Consensus 89 ----~~~~~Gidi~~v~~Vi~~~~----p~~~~~~~qr~ 119 (212)
T 3eaq_A 89 ----DVAARGLDIPQVDLVVHYRL----PDRAEAYQHRS 119 (212)
T ss_dssp ----TTTTCSSSCCCBSEEEESSC----CSSHHHHHHHH
T ss_pred ----ChhhcCCCCccCcEEEECCC----CcCHHHHHHHh
Confidence 78888899999998885544 34555555443
Done!