Query 005085
Match_columns 715
No_of_seqs 702 out of 4604
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 17:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.5E-68 3.2E-73 645.6 53.9 614 1-624 215-1003(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1E-49 2.2E-54 457.4 25.2 533 1-545 187-856 (889)
3 PLN00113 leucine-rich repeat r 99.9 4.3E-27 9.3E-32 285.0 22.1 332 233-570 43-391 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.2E-26 4.7E-31 278.8 18.3 304 263-569 144-462 (968)
5 PF00931 NB-ARC: NB-ARC domain 99.9 5.3E-28 1.1E-32 251.3 3.2 222 1-248 27-283 (287)
6 KOG4194 Membrane glycoprotein 99.9 3.7E-26 8.1E-31 236.9 5.3 347 262-617 81-486 (873)
7 KOG0444 Cytoskeletal regulator 99.9 9.5E-26 2.1E-30 235.0 -2.6 289 278-573 73-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 227.3 -3.3 268 276-549 96-377 (1255)
9 KOG4194 Membrane glycoprotein 99.9 3E-23 6.4E-28 215.6 3.5 297 262-565 128-445 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 9.1E-24 2E-28 210.5 -4.3 297 263-571 72-540 (565)
11 PLN03210 Resistant to P. syrin 99.8 1.5E-20 3.2E-25 228.6 19.2 256 309-574 589-884 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 4.1E-23 8.8E-28 205.9 -9.1 256 264-531 50-310 (565)
13 PRK15387 E3 ubiquitin-protein 99.7 1.6E-17 3.5E-22 188.1 16.0 228 310-569 223-455 (788)
14 KOG0618 Serine/threonine phosp 99.7 5.6E-19 1.2E-23 193.5 1.3 151 422-574 240-491 (1081)
15 PRK15370 E3 ubiquitin-protein 99.7 6E-17 1.3E-21 184.7 10.7 237 284-548 179-428 (754)
16 PRK15387 E3 ubiquitin-protein 99.7 3.8E-16 8.2E-21 177.0 16.1 248 263-549 205-459 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 2.7E-16 5.9E-21 179.3 12.6 256 263-548 182-445 (754)
18 KOG0618 Serine/threonine phosp 99.6 1.8E-17 4E-22 181.8 -3.2 231 309-546 241-487 (1081)
19 KOG4658 Apoptotic ATPase [Sign 99.6 3.3E-17 7.2E-22 189.5 -2.7 345 181-574 397-785 (889)
20 KOG0617 Ras suppressor protein 99.6 2.5E-17 5.4E-22 146.5 -5.5 103 439-543 95-198 (264)
21 KOG0617 Ras suppressor protein 99.6 5E-17 1.1E-21 144.6 -4.3 162 330-516 31-194 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 3.6E-15 7.7E-20 157.5 2.6 80 311-390 25-119 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 9.1E-15 2E-19 154.4 2.5 100 314-413 3-119 (319)
24 KOG4237 Extracellular matrix p 99.5 4.8E-15 1E-19 148.6 -1.7 236 309-546 67-357 (498)
25 KOG4237 Extracellular matrix p 99.4 1.3E-14 2.7E-19 145.6 -3.5 268 262-533 70-361 (498)
26 KOG0532 Leucine-rich repeat (L 99.1 6.7E-12 1.4E-16 131.8 -4.2 206 314-528 55-270 (722)
27 KOG0532 Leucine-rich repeat (L 99.0 6.9E-12 1.5E-16 131.7 -6.2 178 300-504 89-270 (722)
28 COG4886 Leucine-rich repeat (L 99.0 4.5E-10 9.8E-15 122.2 5.6 194 314-534 98-293 (394)
29 COG4886 Leucine-rich repeat (L 99.0 9.5E-10 2.1E-14 119.7 7.0 189 336-549 97-291 (394)
30 KOG1259 Nischarin, modulator o 98.9 1.8E-10 3.9E-15 111.9 1.2 125 423-554 284-416 (490)
31 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.3E-15 118.3 -0.1 201 328-549 117-340 (505)
32 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 102.2 3.8 115 424-543 20-148 (175)
33 KOG3207 Beta-tubulin folding c 98.9 3.4E-10 7.3E-15 115.8 -0.2 119 246-365 110-232 (505)
34 KOG1259 Nischarin, modulator o 98.8 1E-09 2.2E-14 106.8 2.4 107 422-533 306-414 (490)
35 KOG1909 Ran GTPase-activating 98.8 2E-09 4.4E-14 107.4 0.9 229 309-547 30-310 (382)
36 PLN03150 hypothetical protein; 98.7 1.7E-08 3.8E-13 115.2 8.3 107 425-531 420-528 (623)
37 PF14580 LRR_9: Leucine-rich r 98.7 1.7E-08 3.7E-13 94.6 4.7 78 310-390 20-99 (175)
38 PLN03150 hypothetical protein; 98.6 8.4E-08 1.8E-12 109.6 8.1 103 447-549 419-530 (623)
39 PRK15386 type III secretion pr 98.5 6.3E-07 1.4E-11 94.2 9.4 152 402-577 51-218 (426)
40 TIGR03015 pepcterm_ATPase puta 98.5 4.2E-06 9.1E-11 85.9 15.6 145 1-151 51-242 (269)
41 KOG1909 Ran GTPase-activating 98.4 1.5E-08 3.2E-13 101.4 -2.7 180 327-531 87-311 (382)
42 KOG2120 SCF ubiquitin ligase, 98.4 4.9E-09 1.1E-13 102.2 -7.2 176 309-504 185-373 (419)
43 KOG0531 Protein phosphatase 1, 98.4 4.1E-08 8.9E-13 107.2 -1.5 50 496-546 234-288 (414)
44 PF13855 LRR_8: Leucine rich r 98.3 4.7E-07 1E-11 69.6 4.1 58 424-481 2-60 (61)
45 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.4E-12 103.8 -0.7 215 305-549 91-319 (414)
46 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.9E-13 110.0 -7.7 120 424-549 165-293 (1096)
47 KOG4341 F-box protein containi 98.2 5.1E-08 1.1E-12 99.6 -4.4 255 327-582 159-449 (483)
48 KOG4341 F-box protein containi 98.2 8.4E-08 1.8E-12 98.1 -4.2 248 332-579 138-421 (483)
49 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 67.1 3.0 58 471-529 2-60 (61)
50 KOG2982 Uncharacterized conser 98.1 7.7E-07 1.7E-11 87.2 1.2 183 309-533 71-264 (418)
51 KOG2120 SCF ubiquitin ligase, 98.1 4E-07 8.8E-12 89.1 -1.3 145 424-571 211-375 (419)
52 PRK15386 type III secretion pr 98.1 1.3E-05 2.8E-10 84.5 8.8 130 309-456 52-187 (426)
53 PRK06893 DNA replication initi 97.9 7.7E-05 1.7E-09 74.3 11.6 134 1-144 47-200 (229)
54 PRK04841 transcriptional regul 97.9 0.00018 3.9E-09 87.3 15.9 214 1-227 40-333 (903)
55 KOG1859 Leucine-rich repeat pr 97.8 2.7E-07 5.8E-12 100.2 -10.1 123 356-504 165-289 (1096)
56 PRK09376 rho transcription ter 97.7 4.2E-05 9.1E-10 79.8 5.8 85 1-88 177-271 (416)
57 PF12799 LRR_4: Leucine Rich r 97.6 6.6E-05 1.4E-09 52.9 3.4 36 309-344 1-36 (44)
58 COG5238 RNA1 Ran GTPase-activa 97.6 2.1E-05 4.5E-10 76.3 1.1 37 329-365 89-130 (388)
59 PF05729 NACHT: NACHT domain 97.6 0.00054 1.2E-08 64.3 10.8 76 1-83 8-91 (166)
60 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.2E-09 68.8 5.3 96 446-544 42-149 (233)
61 KOG3665 ZYG-1-like serine/thre 97.6 6.3E-05 1.4E-09 86.1 4.5 103 444-549 146-264 (699)
62 PRK00411 cdc6 cell division co 97.5 0.0012 2.6E-08 71.8 13.9 161 1-166 63-282 (394)
63 cd01128 rho_factor Transcripti 97.5 7.1E-05 1.5E-09 74.8 3.9 88 1-91 24-121 (249)
64 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4E-09 50.6 3.3 36 495-531 2-37 (44)
65 KOG4579 Leucine-rich repeat (L 97.3 2.8E-05 6.2E-10 67.8 -1.9 101 427-530 31-135 (177)
66 PF13401 AAA_22: AAA domain; P 97.3 0.00063 1.4E-08 61.1 6.8 79 1-84 12-98 (131)
67 PF01637 Arch_ATPase: Archaeal 97.3 0.0012 2.6E-08 65.9 9.3 50 96-146 184-233 (234)
68 COG2256 MGS1 ATPase related to 97.2 0.0018 4E-08 67.0 9.7 116 1-141 56-206 (436)
69 PF00308 Bac_DnaA: Bacterial d 97.2 0.0057 1.2E-07 60.3 13.0 54 84-139 147-200 (219)
70 TIGR02928 orc1/cdc6 family rep 97.2 0.0065 1.4E-07 65.3 14.6 136 1-141 48-240 (365)
71 TIGR00767 rho transcription te 97.2 0.00071 1.5E-08 71.2 6.7 83 1-86 176-268 (415)
72 PRK08727 hypothetical protein; 97.2 0.0038 8.3E-08 62.3 11.6 130 1-141 49-198 (233)
73 KOG2982 Uncharacterized conser 97.2 6E-05 1.3E-09 74.2 -1.3 128 421-549 69-213 (418)
74 COG3903 Predicted ATPase [Gene 97.1 0.00045 9.8E-09 71.8 4.7 152 1-159 22-201 (414)
75 KOG4579 Leucine-rich repeat (L 97.1 2.7E-05 5.8E-10 68.0 -3.7 74 314-389 32-110 (177)
76 KOG3665 ZYG-1-like serine/thre 97.1 0.00012 2.6E-09 83.9 0.2 60 421-481 171-231 (699)
77 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0078 1.7E-07 59.8 12.8 27 1-27 46-73 (226)
78 KOG2739 Leucine-rich acidic nu 97.0 0.00024 5.1E-09 69.3 1.4 98 445-545 42-153 (260)
79 KOG1644 U2-associated snRNP A' 97.0 0.0009 2E-08 62.7 4.7 103 425-529 44-151 (233)
80 PRK13342 recombination factor 97.0 0.0036 7.7E-08 68.3 10.3 52 96-147 144-196 (413)
81 COG5238 RNA1 Ran GTPase-activa 96.9 0.0002 4.4E-09 69.7 -0.2 188 308-504 29-252 (388)
82 PRK14087 dnaA chromosomal repl 96.9 0.0098 2.1E-07 65.3 12.4 127 2-146 150-318 (450)
83 PRK05642 DNA replication initi 96.8 0.015 3.3E-07 58.0 12.2 58 84-143 147-204 (234)
84 PRK08084 DNA replication initi 96.8 0.016 3.5E-07 57.9 12.3 134 1-143 53-205 (235)
85 PRK14088 dnaA chromosomal repl 96.7 0.063 1.4E-06 58.9 16.9 27 1-27 138-167 (440)
86 TIGR00635 ruvB Holliday juncti 96.6 0.01 2.2E-07 62.1 10.0 136 1-149 38-203 (305)
87 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.2E-08 63.9 3.2 106 420-528 40-153 (260)
88 PRK12422 chromosomal replicati 96.6 0.026 5.6E-07 61.8 13.2 31 87-117 255-285 (445)
89 PRK09087 hypothetical protein; 96.6 0.028 6.1E-07 55.7 12.3 59 84-145 134-193 (226)
90 PRK00080 ruvB Holliday junctio 96.6 0.012 2.6E-07 62.1 10.1 136 1-149 59-224 (328)
91 COG2909 MalT ATP-dependent tra 96.5 0.026 5.5E-07 64.2 12.6 219 1-229 45-341 (894)
92 TIGR00362 DnaA chromosomal rep 96.4 0.04 8.6E-07 60.1 13.3 20 1-20 144-164 (405)
93 cd01133 F1-ATPase_beta F1 ATP 96.3 0.005 1.1E-07 62.0 5.2 86 2-90 78-180 (274)
94 PRK00149 dnaA chromosomal repl 96.3 0.036 7.9E-07 61.2 12.5 21 1-21 156-177 (450)
95 KOG1947 Leucine rich repeat pr 96.2 0.00088 1.9E-08 74.9 -1.3 62 330-391 186-255 (482)
96 KOG1947 Leucine rich repeat pr 96.1 0.00067 1.4E-08 75.8 -2.6 83 309-391 188-281 (482)
97 COG0593 DnaA ATPase involved i 96.0 0.25 5.4E-06 52.7 16.0 184 2-189 122-333 (408)
98 KOG2123 Uncharacterized conser 96.0 0.00098 2.1E-08 65.3 -1.9 60 468-530 39-100 (388)
99 PRK14086 dnaA chromosomal repl 95.8 0.13 2.8E-06 57.8 13.5 54 85-140 428-481 (617)
100 PHA00729 NTP-binding motif con 95.7 0.083 1.8E-06 51.7 9.9 43 76-118 85-142 (226)
101 COG1474 CDC6 Cdc6-related prot 95.6 0.2 4.2E-06 53.4 13.4 77 2-83 51-133 (366)
102 PRK08116 hypothetical protein; 95.6 0.045 9.6E-07 55.8 8.3 65 2-83 123-188 (268)
103 PRK13341 recombination factor 95.6 0.07 1.5E-06 61.9 10.8 44 96-140 161-210 (725)
104 PRK07952 DNA replication prote 95.6 0.041 9E-07 54.9 7.8 64 2-83 108-172 (244)
105 PRK12377 putative replication 95.5 0.046 1E-06 54.7 8.0 63 2-83 110-173 (248)
106 PF05496 RuvB_N: Holliday junc 95.5 0.044 9.6E-07 53.1 7.2 47 96-144 172-218 (233)
107 KOG2123 Uncharacterized conser 95.5 0.0018 3.8E-08 63.6 -2.3 96 425-524 21-123 (388)
108 PF04665 Pox_A32: Poxvirus A32 95.3 0.065 1.4E-06 53.0 8.1 28 1-28 21-49 (241)
109 PRK08903 DnaA regulatory inact 95.3 0.22 4.8E-06 49.5 11.9 61 86-149 140-201 (227)
110 cd00009 AAA The AAA+ (ATPases 95.2 0.049 1.1E-06 49.3 6.5 27 1-27 27-54 (151)
111 PRK12608 transcription termina 94.9 0.08 1.7E-06 55.7 7.6 81 2-85 142-232 (380)
112 PLN03025 replication factor C 94.9 0.15 3.2E-06 53.7 9.8 43 96-141 151-194 (319)
113 PRK06645 DNA polymerase III su 94.8 0.29 6.2E-06 54.4 12.1 44 96-141 180-223 (507)
114 PF13173 AAA_14: AAA domain 94.8 0.07 1.5E-06 47.7 6.1 26 1-27 10-36 (128)
115 PRK08181 transposase; Validate 94.7 0.11 2.3E-06 52.8 7.8 63 1-83 114-177 (269)
116 PF14516 AAA_35: AAA-like doma 94.6 0.14 3.1E-06 53.9 8.9 145 3-154 41-246 (331)
117 PF00560 LRR_1: Leucine Rich R 94.6 0.019 4.1E-07 33.6 1.2 22 536-559 1-22 (22)
118 TIGR01242 26Sp45 26S proteasom 94.5 0.18 3.9E-06 54.1 9.4 44 94-141 284-328 (364)
119 COG1484 DnaC DNA replication p 94.3 0.16 3.4E-06 51.3 8.1 64 1-83 113-177 (254)
120 smart00382 AAA ATPases associa 94.3 0.091 2E-06 47.0 5.9 27 1-27 10-37 (148)
121 PRK14963 DNA polymerase III su 94.3 0.36 7.8E-06 53.8 11.4 48 95-144 167-214 (504)
122 PRK14961 DNA polymerase III su 94.2 0.53 1.1E-05 50.4 12.4 45 96-143 171-216 (363)
123 KOG2028 ATPase related to the 94.1 0.27 5.8E-06 50.6 9.0 94 1-116 170-294 (554)
124 PF01695 IstB_IS21: IstB-like 94.1 0.1 2.2E-06 49.5 5.9 63 1-83 55-118 (178)
125 PF00560 LRR_1: Leucine Rich R 94.0 0.033 7.2E-07 32.6 1.5 21 310-330 1-21 (22)
126 PF13191 AAA_16: AAA ATPase do 94.0 0.13 2.8E-06 49.1 6.5 19 1-19 32-51 (185)
127 PRK06526 transposase; Provisio 94.0 0.097 2.1E-06 52.8 5.8 63 1-83 106-169 (254)
128 PRK14949 DNA polymerase III su 93.9 0.44 9.6E-06 55.6 11.5 47 96-144 171-217 (944)
129 PTZ00112 origin recognition co 93.8 0.31 6.8E-06 56.3 9.9 78 1-83 789-879 (1164)
130 PRK04195 replication factor C 93.8 0.49 1.1E-05 52.8 11.5 46 96-144 153-199 (482)
131 COG3899 Predicted ATPase [Gene 93.8 0.26 5.6E-06 58.7 9.7 56 95-153 211-266 (849)
132 PRK09183 transposase/IS protei 93.8 0.22 4.7E-06 50.5 7.9 27 1-27 110-137 (259)
133 PF13504 LRR_7: Leucine rich r 93.7 0.044 9.5E-07 29.8 1.5 15 535-549 1-15 (17)
134 PRK08939 primosomal protein Dn 93.6 0.24 5.3E-06 51.4 8.1 62 2-83 165-227 (306)
135 PRK08118 topology modulation p 93.5 0.055 1.2E-06 50.8 2.9 26 1-26 9-38 (167)
136 PRK06620 hypothetical protein; 93.5 0.48 1E-05 46.5 9.5 52 86-140 130-182 (214)
137 PRK11331 5-methylcytosine-spec 93.3 0.12 2.6E-06 55.7 5.4 33 1-34 202-237 (459)
138 TIGR00678 holB DNA polymerase 93.3 0.95 2.1E-05 43.4 11.1 40 96-143 148-187 (188)
139 PRK14956 DNA polymerase III su 93.2 0.42 9.2E-06 52.2 9.2 44 96-141 173-216 (484)
140 PRK14962 DNA polymerase III su 93.1 0.98 2.1E-05 49.9 12.3 52 95-149 168-221 (472)
141 PF00004 AAA: ATPase family as 92.7 0.09 2E-06 46.9 3.0 17 1-17 6-23 (132)
142 COG2255 RuvB Holliday junction 92.7 1.3 2.9E-05 44.3 11.0 28 126-153 262-289 (332)
143 PRK14964 DNA polymerase III su 92.7 1.1 2.4E-05 49.4 11.8 46 95-142 167-212 (491)
144 TIGR03689 pup_AAA proteasome A 92.6 0.34 7.5E-06 53.6 7.7 19 1-19 224-243 (512)
145 PRK06921 hypothetical protein; 92.6 0.21 4.6E-06 50.7 5.7 26 2-27 126-153 (266)
146 COG3267 ExeA Type II secretory 92.5 2.2 4.7E-05 42.2 12.1 51 98-148 195-246 (269)
147 PF13306 LRR_5: Leucine rich r 92.5 0.68 1.5E-05 41.0 8.4 13 328-340 8-20 (129)
148 PRK14960 DNA polymerase III su 92.4 1.1 2.3E-05 51.0 11.2 45 96-143 170-215 (702)
149 PRK12323 DNA polymerase III su 92.3 1.1 2.5E-05 50.6 11.3 49 96-146 176-224 (700)
150 PRK14957 DNA polymerase III su 92.3 1.2 2.6E-05 50.0 11.6 51 95-147 170-221 (546)
151 PF13306 LRR_5: Leucine rich r 92.2 0.59 1.3E-05 41.4 7.6 104 274-387 3-111 (129)
152 PRK06835 DNA replication prote 92.2 0.48 1E-05 49.7 7.9 26 2-27 192-218 (329)
153 PRK12402 replication factor C 92.1 1.2 2.6E-05 47.1 11.2 45 96-143 177-222 (337)
154 PRK07003 DNA polymerase III su 92.1 1.1 2.4E-05 51.5 11.0 49 96-146 171-220 (830)
155 PRK09112 DNA polymerase III su 92.0 0.8 1.7E-05 48.6 9.4 49 96-148 193-241 (351)
156 PRK09361 radB DNA repair and r 91.9 0.2 4.3E-06 49.7 4.5 27 1-27 31-58 (225)
157 TIGR02903 spore_lon_C ATP-depe 91.8 0.88 1.9E-05 52.2 10.2 23 61-83 280-302 (615)
158 TIGR02237 recomb_radB DNA repa 91.7 0.24 5.1E-06 48.5 4.8 27 1-27 20-47 (209)
159 PRK00440 rfc replication facto 91.4 1.6 3.6E-05 45.6 11.2 45 96-143 154-199 (319)
160 COG1618 Predicted nucleotide k 91.4 0.18 3.9E-06 45.9 3.1 32 1-32 13-47 (179)
161 PTZ00454 26S protease regulato 91.3 0.88 1.9E-05 49.1 9.0 23 94-116 307-329 (398)
162 PF05621 TniB: Bacterial TniB 91.2 2.9 6.2E-05 42.8 11.8 78 2-83 70-155 (302)
163 PTZ00361 26 proteosome regulat 91.1 0.38 8.3E-06 52.4 5.9 25 94-118 345-369 (438)
164 PRK07994 DNA polymerase III su 91.0 1.6 3.4E-05 49.9 10.9 47 95-143 170-216 (647)
165 KOG2227 Pre-initiation complex 90.9 2 4.3E-05 46.1 10.6 142 2-148 184-373 (529)
166 PRK07940 DNA polymerase III su 90.9 1.6 3.4E-05 47.1 10.3 45 96-147 169-213 (394)
167 PRK03992 proteasome-activating 90.9 1.6 3.5E-05 47.1 10.6 24 95-118 294-317 (389)
168 PRK04132 replication factor C 90.9 1.8 3.8E-05 51.0 11.4 46 95-143 681-727 (846)
169 PRK14951 DNA polymerase III su 90.6 2.3 4.9E-05 48.5 11.7 48 95-144 175-222 (618)
170 PRK05541 adenylylsulfate kinas 90.6 0.21 4.5E-06 47.4 3.0 27 1-27 15-42 (176)
171 COG4088 Predicted nucleotide k 90.4 0.4 8.6E-06 45.5 4.5 73 1-83 9-83 (261)
172 PF07728 AAA_5: AAA domain (dy 90.1 0.19 4.1E-06 45.5 2.3 73 1-90 7-83 (139)
173 PRK14969 DNA polymerase III su 90.0 1.9 4.2E-05 48.5 10.5 45 96-142 171-215 (527)
174 PRK05564 DNA polymerase III su 90.0 3.3 7.2E-05 43.3 11.8 133 1-147 34-190 (313)
175 KOG0735 AAA+-type ATPase [Post 90.0 0.62 1.3E-05 52.2 6.3 63 2-83 440-504 (952)
176 PRK08691 DNA polymerase III su 90.0 1.8 3.8E-05 49.6 10.0 45 96-142 171-215 (709)
177 PRK07471 DNA polymerase III su 89.9 4.9 0.00011 42.9 13.0 48 95-148 192-239 (365)
178 PRK09280 F0F1 ATP synthase sub 89.9 0.89 1.9E-05 49.5 7.4 83 2-87 153-252 (463)
179 COG0468 RecA RecA/RadA recombi 89.8 0.41 8.9E-06 48.6 4.5 81 1-83 68-151 (279)
180 PRK14958 DNA polymerase III su 89.7 2.1 4.6E-05 47.9 10.4 45 96-142 171-215 (509)
181 KOG3864 Uncharacterized conser 89.7 0.1 2.2E-06 49.3 0.1 83 447-529 102-187 (221)
182 PTZ00202 tuzin; Provisional 89.6 0.99 2.2E-05 48.4 7.2 67 1-79 294-367 (550)
183 TIGR02881 spore_V_K stage V sp 89.5 2.5 5.3E-05 43.0 10.1 16 1-16 50-66 (261)
184 PF13504 LRR_7: Leucine rich r 89.4 0.26 5.7E-06 26.7 1.5 15 310-324 2-16 (17)
185 PF13671 AAA_33: AAA domain; P 89.3 1.6 3.5E-05 39.4 7.8 16 1-16 7-23 (143)
186 cd01135 V_A-ATPase_B V/A-type 89.3 1.1 2.3E-05 45.3 6.9 87 2-92 78-185 (276)
187 PF08433 KTI12: Chromatin asso 89.2 1.6 3.5E-05 44.4 8.3 18 1-18 9-27 (270)
188 PRK12597 F0F1 ATP synthase sub 89.1 1.2 2.5E-05 48.8 7.5 82 2-87 152-251 (461)
189 cd01132 F1_ATPase_alpha F1 ATP 89.0 1.2 2.7E-05 44.9 7.1 85 2-91 78-179 (274)
190 PRK07261 topology modulation p 88.9 1.3 2.8E-05 41.8 6.9 15 1-15 8-23 (171)
191 TIGR03574 selen_PSTK L-seryl-t 88.8 1.2 2.6E-05 44.9 7.2 19 1-19 7-26 (249)
192 cd01393 recA_like RecA is a b 88.8 0.86 1.9E-05 45.1 6.0 27 1-27 27-60 (226)
193 PRK12678 transcription termina 88.8 0.7 1.5E-05 51.1 5.6 86 1-89 424-519 (672)
194 CHL00059 atpA ATP synthase CF1 88.8 1.1 2.4E-05 48.9 7.1 81 2-89 150-249 (485)
195 PRK14959 DNA polymerase III su 88.7 3 6.4E-05 47.4 10.7 52 96-150 171-224 (624)
196 PRK05896 DNA polymerase III su 88.6 1.9 4E-05 48.7 8.9 50 96-148 171-222 (605)
197 cd01394 radB RadB. The archaea 88.3 0.68 1.5E-05 45.6 4.9 27 1-27 27-54 (218)
198 KOG2543 Origin recognition com 88.3 1.4 3.1E-05 45.9 7.1 74 2-83 39-125 (438)
199 PRK05707 DNA polymerase III su 88.2 6 0.00013 41.6 12.0 47 96-148 158-204 (328)
200 KOG3864 Uncharacterized conser 87.9 0.16 3.5E-06 48.0 0.1 62 471-532 102-165 (221)
201 PF00448 SRP54: SRP54-type pro 87.7 0.65 1.4E-05 44.9 4.2 80 1-84 9-94 (196)
202 TIGR03345 VI_ClpV1 type VI sec 87.3 4.9 0.00011 48.1 11.9 19 96-114 343-361 (852)
203 PF01583 APS_kinase: Adenylyls 87.3 0.18 3.9E-06 46.4 0.0 27 1-27 10-37 (156)
204 TIGR01241 FtsH_fam ATP-depende 87.2 3.4 7.3E-05 46.4 10.1 43 94-140 216-259 (495)
205 PRK14954 DNA polymerase III su 87.0 2.5 5.5E-05 48.2 8.9 44 95-141 178-222 (620)
206 cd01123 Rad51_DMC1_radA Rad51_ 86.9 0.76 1.6E-05 45.8 4.3 27 1-27 27-60 (235)
207 KOG0741 AAA+-type ATPase [Post 86.8 4.6 0.0001 44.0 10.0 50 84-137 649-704 (744)
208 TIGR02397 dnaX_nterm DNA polym 86.6 8.2 0.00018 41.1 12.4 49 96-146 169-217 (355)
209 PF13207 AAA_17: AAA domain; P 86.6 0.45 9.7E-06 41.7 2.2 16 1-16 7-23 (121)
210 TIGR01039 atpD ATP synthase, F 86.4 2.2 4.7E-05 46.5 7.6 81 2-85 152-249 (461)
211 cd01121 Sms Sms (bacterial rad 86.1 1.9 4.1E-05 46.1 7.0 26 2-27 91-117 (372)
212 PRK14952 DNA polymerase III su 85.8 8.9 0.00019 43.6 12.4 51 95-147 169-220 (584)
213 CHL00176 ftsH cell division pr 85.7 5 0.00011 46.1 10.5 16 1-16 224-240 (638)
214 PRK14970 DNA polymerase III su 85.7 6.5 0.00014 42.1 11.0 44 96-142 160-204 (367)
215 TIGR02639 ClpA ATP-dependent C 85.6 3.2 7E-05 48.9 9.3 17 1-17 211-228 (731)
216 CHL00181 cbbX CbbX; Provisiona 85.4 11 0.00024 38.8 12.0 16 1-16 67-83 (287)
217 PRK14955 DNA polymerase III su 85.2 1.6 3.5E-05 47.3 6.1 44 96-142 179-223 (397)
218 PRK09281 F0F1 ATP synthase sub 85.1 2 4.2E-05 47.7 6.6 79 2-88 171-269 (502)
219 PRK09111 DNA polymerase III su 84.9 6.8 0.00015 44.7 11.0 47 96-144 184-230 (598)
220 PF00006 ATP-synt_ab: ATP synt 84.6 1.5 3.3E-05 42.9 5.0 77 2-86 24-118 (215)
221 PF13238 AAA_18: AAA domain; P 84.5 0.64 1.4E-05 41.1 2.2 16 1-16 6-22 (129)
222 KOG0473 Leucine-rich repeat pr 84.5 0.048 1E-06 52.4 -5.2 87 442-531 38-124 (326)
223 PRK04301 radA DNA repair and r 84.5 1.1 2.5E-05 46.9 4.4 32 1-33 110-148 (317)
224 PRK14950 DNA polymerase III su 84.3 5.6 0.00012 45.5 10.2 47 96-144 172-218 (585)
225 COG1192 Soj ATPases involved i 84.3 0.74 1.6E-05 46.7 2.8 26 2-27 12-39 (259)
226 PRK07133 DNA polymerase III su 84.1 11 0.00024 43.6 12.3 44 96-142 170-214 (725)
227 TIGR03324 alt_F1F0_F1_al alter 83.9 3 6.4E-05 45.9 7.3 78 2-85 171-266 (497)
228 KOG4308 LRR-containing protein 83.8 0.039 8.5E-07 60.8 -7.2 175 355-549 87-304 (478)
229 cd02027 APSK Adenosine 5'-phos 83.8 1.8 3.9E-05 39.7 4.9 16 2-17 8-24 (149)
230 PRK14953 DNA polymerase III su 83.4 14 0.00031 41.1 12.5 44 96-142 171-215 (486)
231 PF01656 CbiA: CobQ/CobB/MinD/ 83.3 1.1 2.4E-05 42.9 3.5 27 1-27 7-34 (195)
232 smart00369 LRR_TYP Leucine-ric 83.3 0.75 1.6E-05 27.9 1.4 21 534-556 1-21 (26)
233 smart00370 LRR Leucine-rich re 83.3 0.75 1.6E-05 27.9 1.4 21 534-556 1-21 (26)
234 PRK14722 flhF flagellar biosyn 83.0 4.1 8.9E-05 43.4 7.7 78 1-84 145-226 (374)
235 cd01122 GP4d_helicase GP4d_hel 83.0 5.1 0.00011 40.8 8.4 43 1-50 38-82 (271)
236 cd00983 recA RecA is a bacter 82.8 2.4 5.2E-05 44.2 5.8 27 1-27 63-90 (325)
237 COG1066 Sms Predicted ATP-depe 82.7 4.6 0.0001 42.8 7.7 73 2-83 102-178 (456)
238 PRK14528 adenylate kinase; Pro 82.3 17 0.00038 34.6 11.3 28 63-90 66-95 (186)
239 PTZ00185 ATPase alpha subunit; 82.3 4.6 0.0001 44.4 7.8 79 2-84 198-300 (574)
240 TIGR02012 tigrfam_recA protein 82.3 2.8 6.1E-05 43.6 6.1 27 1-27 63-90 (321)
241 KOG0730 AAA+-type ATPase [Post 82.3 4.4 9.6E-05 45.4 7.8 38 94-131 593-631 (693)
242 CHL00060 atpB ATP synthase CF1 82.3 2.7 5.8E-05 46.1 6.1 80 2-85 170-274 (494)
243 TIGR00962 atpA proton transloc 82.2 3.4 7.3E-05 45.8 7.0 83 2-90 170-270 (501)
244 PRK00889 adenylylsulfate kinas 82.0 1.6 3.5E-05 41.1 4.0 18 1-18 12-30 (175)
245 TIGR03305 alt_F1F0_F1_bet alte 82.0 3.2 6.9E-05 45.2 6.6 80 2-85 147-244 (449)
246 PF07726 AAA_3: ATPase family 82.0 0.6 1.3E-05 41.2 0.9 21 2-22 8-29 (131)
247 CHL00195 ycf46 Ycf46; Provisio 81.7 13 0.00027 41.5 11.2 26 93-118 382-407 (489)
248 PF00910 RNA_helicase: RNA hel 81.3 0.93 2E-05 38.9 1.9 20 1-20 6-26 (107)
249 TIGR03346 chaperone_ClpB ATP-d 81.3 13 0.00027 44.9 11.9 18 1-18 202-220 (852)
250 KOG0473 Leucine-rich repeat pr 81.3 0.077 1.7E-06 51.1 -5.2 87 351-459 38-124 (326)
251 PRK08972 fliI flagellum-specif 81.3 2.9 6.3E-05 45.3 5.9 81 2-88 171-267 (444)
252 TIGR01243 CDC48 AAA family ATP 80.9 6.6 0.00014 46.4 9.3 23 94-116 613-635 (733)
253 PRK03839 putative kinase; Prov 80.8 0.99 2.2E-05 42.9 2.0 16 1-16 8-24 (180)
254 PHA02518 ParA-like protein; Pr 80.7 1.5 3.4E-05 42.6 3.5 17 2-18 10-27 (211)
255 KOG1969 DNA replication checkp 80.7 3.2 7E-05 47.0 6.1 61 1-83 334-397 (877)
256 PRK08769 DNA polymerase III su 80.7 13 0.00029 38.8 10.4 46 95-148 164-209 (319)
257 PRK13343 F0F1 ATP synthase sub 80.5 3.8 8.2E-05 45.3 6.6 79 2-85 171-266 (502)
258 PRK11823 DNA repair protein Ra 80.4 4.1 8.9E-05 44.8 6.9 26 2-27 89-115 (446)
259 TIGR01041 ATP_syn_B_arch ATP s 80.3 4.3 9.2E-05 44.5 6.8 80 2-85 150-250 (458)
260 PRK08927 fliI flagellum-specif 79.6 4.5 9.8E-05 44.0 6.7 78 2-85 167-260 (442)
261 COG0003 ArsA Predicted ATPase 79.4 1.8 3.8E-05 45.1 3.5 27 1-27 10-37 (322)
262 cd03111 CpaE_like This protein 79.4 1.8 4E-05 37.0 3.1 26 2-27 9-35 (106)
263 cd02042 ParA ParA and ParB of 79.4 1.3 2.8E-05 37.7 2.1 16 2-17 9-25 (104)
264 PRK09354 recA recombinase A; P 79.4 3.7 8.1E-05 43.2 5.8 27 1-27 68-95 (349)
265 TIGR03499 FlhF flagellar biosy 79.3 5.9 0.00013 40.7 7.3 18 1-18 202-220 (282)
266 PRK14948 DNA polymerase III su 79.2 22 0.00047 41.0 12.4 47 96-145 173-220 (620)
267 cd02036 MinD Bacterial cell di 79.2 1.9 4.1E-05 40.7 3.4 26 1-26 8-34 (179)
268 PRK08233 hypothetical protein; 79.2 1.2 2.6E-05 42.3 2.0 16 1-16 11-27 (182)
269 COG1222 RPT1 ATP-dependent 26S 78.8 7.2 0.00016 40.6 7.4 69 94-166 313-392 (406)
270 PF07015 VirC1: VirC1 protein; 78.6 2.1 4.5E-05 42.0 3.4 26 2-27 11-37 (231)
271 cd03115 SRP The signal recogni 78.5 5.7 0.00012 37.3 6.4 19 1-19 8-27 (173)
272 cd00544 CobU Adenosylcobinamid 78.3 7.3 0.00016 36.6 7.0 73 2-83 8-83 (169)
273 PRK00625 shikimate kinase; Pro 78.1 1.4 3.1E-05 41.5 2.2 16 1-16 8-24 (173)
274 TIGR00416 sms DNA repair prote 77.9 4 8.7E-05 45.0 5.9 26 2-27 103-129 (454)
275 TIGR00959 ffh signal recogniti 77.8 16 0.00035 39.9 10.3 146 1-151 107-278 (428)
276 cd01124 KaiC KaiC is a circadi 77.6 4.2 9.1E-05 38.6 5.3 27 1-27 7-34 (187)
277 PF08303 tRNA_lig_kinase: tRNA 77.4 4 8.6E-05 37.7 4.7 42 2-50 8-50 (168)
278 cd01983 Fer4_NifH The Fer4_Nif 77.4 2.4 5.3E-05 34.9 3.2 17 2-18 8-25 (99)
279 PF02374 ArsA_ATPase: Anion-tr 77.4 2.2 4.8E-05 44.3 3.5 18 2-19 10-28 (305)
280 PRK13233 nifH nitrogenase redu 77.2 1.9 4.1E-05 44.2 2.9 17 2-18 11-28 (275)
281 PRK07764 DNA polymerase III su 77.0 29 0.00062 41.3 12.8 79 61-142 135-216 (824)
282 PRK13849 putative crown gall t 77.0 2.3 5.1E-05 42.2 3.4 16 2-17 11-27 (231)
283 PF00485 PRK: Phosphoribulokin 76.9 1.7 3.8E-05 41.8 2.5 18 1-18 7-25 (194)
284 COG0467 RAD55 RecA-superfamily 76.8 3.9 8.5E-05 41.4 5.1 29 2-31 32-61 (260)
285 COG0563 Adk Adenylate kinase a 76.7 2.9 6.3E-05 39.6 3.8 83 1-91 8-95 (178)
286 TIGR01281 DPOR_bchL light-inde 76.7 1.5 3.3E-05 44.6 2.1 14 2-15 9-23 (268)
287 PRK00771 signal recognition pa 76.6 13 0.00028 40.6 9.2 80 1-85 103-187 (437)
288 PF03029 ATP_bind_1: Conserved 76.5 2.5 5.4E-05 42.2 3.5 19 1-19 4-23 (238)
289 smart00364 LRR_BAC Leucine-ric 76.4 1.6 3.5E-05 26.6 1.3 18 535-554 2-19 (26)
290 COG0529 CysC Adenylylsulfate k 76.3 1.8 3.9E-05 40.2 2.2 22 1-22 31-53 (197)
291 CHL00095 clpC Clp protease ATP 76.1 9.8 0.00021 45.6 8.9 17 1-17 208-225 (821)
292 cd02037 MRP-like MRP (Multiple 76.1 2.5 5.5E-05 39.6 3.3 17 2-18 9-26 (169)
293 PRK11034 clpA ATP-dependent Cl 76.0 10 0.00022 44.6 8.7 16 1-16 215-231 (758)
294 PF08423 Rad51: Rad51; InterP 76.0 3.4 7.4E-05 41.8 4.3 33 1-34 46-85 (256)
295 PF03266 NTPase_1: NTPase; In 75.9 1.8 3.9E-05 40.6 2.1 18 1-18 7-25 (168)
296 COG0305 DnaB Replicative DNA h 75.8 7.1 0.00015 42.3 6.8 85 2-95 205-308 (435)
297 PF05673 DUF815: Protein of un 75.5 51 0.0011 32.8 12.0 17 2-18 61-78 (249)
298 COG0572 Udk Uridine kinase [Nu 75.4 2.4 5.1E-05 41.2 2.8 112 2-121 17-137 (218)
299 KOG0729 26S proteasome regulat 75.4 11 0.00023 37.5 7.2 60 1-83 219-280 (435)
300 PRK10867 signal recognition pa 75.4 5.2 0.00011 43.6 5.7 147 1-152 108-280 (433)
301 PRK13185 chlL protochlorophyll 75.3 1.8 3.8E-05 44.2 2.1 16 2-17 11-27 (270)
302 cd02040 NifH NifH gene encodes 75.2 2.7 5.8E-05 42.8 3.4 16 2-17 10-26 (270)
303 PRK10865 protein disaggregatio 75.2 6.1 0.00013 47.4 6.8 17 1-17 207-224 (857)
304 TIGR02236 recomb_radA DNA repa 75.2 3.8 8.2E-05 42.8 4.6 32 1-33 103-141 (310)
305 PF15202 Adipogenin: Adipogeni 75.1 1.1 2.4E-05 33.6 0.4 11 698-708 51-61 (81)
306 PRK06305 DNA polymerase III su 75.1 23 0.0005 39.1 10.8 44 95-141 172-216 (451)
307 PRK14971 DNA polymerase III su 75.1 25 0.00053 40.5 11.3 46 95-142 172-217 (614)
308 PRK03846 adenylylsulfate kinas 75.0 3.4 7.4E-05 39.9 3.9 18 1-18 32-50 (198)
309 PRK08149 ATP synthase SpaL; Va 74.9 5.9 0.00013 43.0 6.0 80 2-87 160-255 (428)
310 PRK06936 type III secretion sy 74.7 6 0.00013 43.0 5.9 80 2-87 171-266 (439)
311 PRK10037 cell division protein 74.7 2.9 6.2E-05 42.2 3.4 18 2-19 11-29 (250)
312 PF13481 AAA_25: AAA domain; P 74.6 15 0.00032 35.1 8.3 17 1-17 40-57 (193)
313 PRK06762 hypothetical protein; 74.6 2 4.4E-05 40.0 2.2 16 1-16 10-26 (166)
314 cd01120 RecA-like_NTPases RecA 74.6 3.3 7.1E-05 38.0 3.6 27 1-27 7-34 (165)
315 PTZ00301 uridine kinase; Provi 74.5 2.7 5.8E-05 41.1 3.0 20 2-21 12-32 (210)
316 PRK00131 aroK shikimate kinase 74.4 2 4.3E-05 40.3 2.1 16 1-16 12-28 (175)
317 PRK05800 cobU adenosylcobinami 74.4 8.4 0.00018 36.2 6.3 72 2-83 10-86 (170)
318 COG1149 MinD superfamily P-loo 74.4 2.4 5.3E-05 42.2 2.6 29 2-30 11-40 (284)
319 TIGR02655 circ_KaiC circadian 74.3 3.4 7.5E-05 46.1 4.2 27 1-27 271-298 (484)
320 KOG0744 AAA+-type ATPase [Post 74.3 8.9 0.00019 39.3 6.5 27 1-27 185-216 (423)
321 PF06564 YhjQ: YhjQ protein; 74.2 3.3 7.2E-05 41.1 3.6 26 2-27 11-37 (243)
322 cd02032 Bchl_like This family 74.2 2.9 6.3E-05 42.5 3.4 17 2-18 9-26 (267)
323 cd02019 NK Nucleoside/nucleoti 74.2 2.4 5.2E-05 33.0 2.1 16 1-16 7-23 (69)
324 TIGR01969 minD_arch cell divis 74.1 3 6.4E-05 41.9 3.4 16 2-17 10-26 (251)
325 cd01131 PilT Pilus retraction 74.1 4.7 0.0001 39.0 4.6 75 1-83 9-84 (198)
326 PRK13231 nitrogenase reductase 74.1 1.7 3.6E-05 44.3 1.6 17 2-18 11-28 (264)
327 PRK04296 thymidine kinase; Pro 74.0 3 6.5E-05 40.0 3.2 25 2-26 11-36 (190)
328 PRK13947 shikimate kinase; Pro 74.0 2.1 4.5E-05 40.2 2.1 17 1-17 9-26 (171)
329 PF13245 AAA_19: Part of AAA d 73.9 8.1 0.00018 30.7 5.1 27 1-27 18-48 (76)
330 PRK08451 DNA polymerase III su 73.6 21 0.00046 40.1 10.1 47 96-144 169-215 (535)
331 PRK13230 nitrogenase reductase 73.5 3.1 6.7E-05 42.7 3.4 16 2-17 10-26 (279)
332 cd02034 CooC The accessory pro 73.5 3.9 8.4E-05 35.7 3.5 26 1-26 7-33 (116)
333 TIGR02639 ClpA ATP-dependent C 73.4 3.5 7.7E-05 48.6 4.2 16 1-16 492-508 (731)
334 PF00154 RecA: recA bacterial 73.3 6.2 0.00013 41.0 5.5 72 2-83 62-141 (322)
335 PRK06647 DNA polymerase III su 73.3 27 0.00058 39.7 10.9 45 96-142 171-215 (563)
336 COG0378 HypB Ni2+-binding GTPa 73.2 2.9 6.4E-05 39.6 2.8 26 1-26 21-47 (202)
337 PRK13232 nifH nitrogenase redu 72.9 2.2 4.7E-05 43.7 2.0 15 2-16 10-25 (273)
338 PRK00279 adk adenylate kinase; 72.8 22 0.00048 34.7 9.2 15 1-15 8-23 (215)
339 TIGR01287 nifH nitrogenase iro 72.8 2.2 4.8E-05 43.7 2.1 15 2-16 9-24 (275)
340 PRK05922 type III secretion sy 72.8 5.8 0.00013 43.1 5.3 20 66-85 238-259 (434)
341 PHA02530 pseT polynucleotide k 72.7 13 0.00028 38.5 7.9 16 1-16 10-26 (300)
342 PRK05973 replicative DNA helic 72.3 6.3 0.00014 39.2 5.1 27 1-27 72-99 (237)
343 PRK07165 F0F1 ATP synthase sub 72.1 4.7 0.0001 44.4 4.4 74 2-84 152-244 (507)
344 PRK07993 DNA polymerase III su 71.7 25 0.00054 37.1 9.7 45 96-147 160-204 (334)
345 PRK05480 uridine/cytidine kina 71.4 2.6 5.7E-05 41.1 2.2 16 1-16 14-30 (209)
346 KOG0394 Ras-related GTPase [Ge 71.2 2.5 5.4E-05 39.4 1.8 24 2-25 18-43 (210)
347 PRK07667 uridine kinase; Provi 71.1 4.4 9.5E-05 39.0 3.6 19 1-19 25-44 (193)
348 cd02117 NifH_like This family 70.9 2.6 5.7E-05 41.2 2.1 16 2-17 9-25 (212)
349 PRK13235 nifH nitrogenase redu 70.9 3.9 8.4E-05 41.8 3.4 14 2-15 10-24 (274)
350 CHL00095 clpC Clp protease ATP 70.7 7.9 0.00017 46.4 6.3 16 1-16 547-563 (821)
351 PRK05703 flhF flagellar biosyn 70.7 15 0.00033 40.1 8.1 27 1-27 229-258 (424)
352 cd03110 Fer4_NifH_child This p 70.6 2.3 5E-05 40.2 1.6 16 1-16 8-24 (179)
353 cd00227 CPT Chloramphenicol (C 70.5 3.1 6.7E-05 39.3 2.4 16 1-16 10-26 (175)
354 cd02021 GntK Gluconate kinase 70.3 2.8 6.1E-05 38.3 2.0 15 1-15 7-22 (150)
355 TIGR03371 cellulose_yhjQ cellu 70.2 4.2 9.2E-05 40.7 3.5 18 2-19 11-29 (246)
356 PRK06090 DNA polymerase III su 70.1 1.1E+02 0.0025 31.9 13.9 44 95-148 159-202 (319)
357 TIGR01040 V-ATPase_V1_B V-type 70.1 6.5 0.00014 42.8 4.9 20 66-85 237-259 (466)
358 PRK06217 hypothetical protein; 69.7 3 6.5E-05 39.7 2.1 16 1-16 9-25 (183)
359 PRK13768 GTPase; Provisional 69.7 4.5 9.9E-05 40.8 3.5 18 1-18 10-28 (253)
360 cd02028 UMPK_like Uridine mono 69.6 4.9 0.00011 38.1 3.6 18 2-19 8-26 (179)
361 KOG0733 Nuclear AAA ATPase (VC 69.6 5.6 0.00012 44.2 4.3 19 1-19 231-250 (802)
362 PRK06696 uridine kinase; Valid 69.5 4.4 9.4E-05 40.0 3.3 19 1-19 30-49 (223)
363 PRK13695 putative NTPase; Prov 69.4 4.4 9.5E-05 38.2 3.2 26 1-26 8-35 (174)
364 PRK04040 adenylate kinase; Pro 69.4 3.6 7.8E-05 39.4 2.6 17 1-17 10-27 (188)
365 PTZ00088 adenylate kinase 1; P 69.3 7.9 0.00017 38.3 5.0 15 1-15 14-29 (229)
366 PRK13975 thymidylate kinase; P 69.2 3.2 6.9E-05 39.9 2.2 18 1-18 10-28 (196)
367 TIGR01243 CDC48 AAA family ATP 69.0 4.7 0.0001 47.6 4.0 18 1-18 220-238 (733)
368 TIGR00455 apsK adenylylsulfate 69.0 5 0.00011 38.2 3.5 16 2-17 27-43 (184)
369 COG1428 Deoxynucleoside kinase 68.8 3.1 6.8E-05 39.9 2.0 17 1-17 12-29 (216)
370 KOG0731 AAA+-type ATPase conta 68.7 45 0.00098 38.8 11.3 57 85-143 464-520 (774)
371 COG0125 Tmk Thymidylate kinase 68.7 8.1 0.00017 37.6 4.8 26 2-27 12-38 (208)
372 KOG3347 Predicted nucleotide k 68.7 2.8 6E-05 37.8 1.5 14 2-15 16-30 (176)
373 PLN00020 ribulose bisphosphate 68.6 11 0.00025 39.7 6.1 19 1-19 156-175 (413)
374 KOG4308 LRR-containing protein 68.5 0.27 5.8E-06 54.3 -6.1 149 425-574 117-305 (478)
375 TIGR01968 minD_bact septum sit 68.5 4.7 0.0001 40.7 3.4 17 2-18 11-28 (261)
376 PRK10733 hflB ATP-dependent me 68.5 24 0.00052 41.0 9.5 19 1-19 193-212 (644)
377 TIGR00064 ftsY signal recognit 68.3 5.1 0.00011 40.9 3.5 27 1-27 80-107 (272)
378 PRK06820 type III secretion sy 68.2 9 0.0002 41.7 5.5 21 66-86 244-266 (440)
379 PRK08472 fliI flagellum-specif 68.1 9.4 0.0002 41.5 5.6 25 66-90 237-263 (434)
380 cd01136 ATPase_flagellum-secre 67.5 11 0.00024 39.3 5.9 81 2-88 78-174 (326)
381 PRK05563 DNA polymerase III su 67.4 57 0.0012 37.1 12.0 15 1-15 46-61 (559)
382 TIGR03877 thermo_KaiC_1 KaiC d 67.4 9.3 0.0002 38.1 5.2 26 1-27 29-56 (237)
383 PRK06547 hypothetical protein; 67.3 3.7 8E-05 38.7 2.1 15 1-15 23-38 (172)
384 COG1157 FliI Flagellar biosynt 67.3 15 0.00033 39.2 6.7 77 2-84 172-264 (441)
385 TIGR01351 adk adenylate kinase 67.3 19 0.00042 35.0 7.3 15 1-15 7-22 (210)
386 KOG1051 Chaperone HSP104 and r 67.2 13 0.00029 43.8 7.0 70 1-83 599-670 (898)
387 CHL00072 chlL photochlorophyll 67.1 5.3 0.00011 41.2 3.4 15 2-16 9-24 (290)
388 PRK02118 V-type ATP synthase s 67.1 14 0.00031 40.0 6.7 78 2-85 149-243 (436)
389 TIGR03498 FliI_clade3 flagella 66.9 11 0.00023 41.0 5.8 21 66-86 221-243 (418)
390 PRK10865 protein disaggregatio 66.9 15 0.00033 44.0 7.7 17 1-17 606-623 (857)
391 TIGR00235 udk uridine kinase. 66.8 3.5 7.7E-05 40.1 2.0 17 1-17 14-31 (207)
392 COG3640 CooC CO dehydrogenase 66.7 6.3 0.00014 38.6 3.5 17 2-18 9-26 (255)
393 PRK13949 shikimate kinase; Pro 66.6 3.8 8.3E-05 38.4 2.1 16 1-16 9-25 (169)
394 PRK12723 flagellar biosynthesi 66.6 10 0.00022 40.8 5.5 17 1-17 182-199 (388)
395 TIGR01359 UMP_CMP_kin_fam UMP- 66.3 3.8 8.3E-05 38.8 2.1 16 1-16 7-23 (183)
396 PF07725 LRR_3: Leucine Rich R 65.9 4.5 9.8E-05 23.0 1.4 19 310-328 1-19 (20)
397 COG1936 Predicted nucleotide k 65.8 3.4 7.3E-05 38.4 1.5 12 2-13 9-21 (180)
398 PRK12727 flagellar biosynthesi 65.7 12 0.00026 41.7 5.9 19 1-19 358-377 (559)
399 PF07088 GvpD: GvpD gas vesicl 65.6 3.6 7.8E-05 43.3 1.8 22 1-22 18-40 (484)
400 TIGR03497 FliI_clade2 flagella 65.6 15 0.00032 39.9 6.6 16 71-86 225-240 (413)
401 PRK10818 cell division inhibit 65.5 5.9 0.00013 40.3 3.4 16 2-17 12-28 (270)
402 COG2812 DnaX DNA polymerase II 65.4 27 0.00058 38.9 8.5 45 95-141 170-214 (515)
403 PF13521 AAA_28: AAA domain; P 65.4 5.5 0.00012 37.0 2.9 14 2-15 8-22 (163)
404 cd02024 NRK1 Nicotinamide ribo 65.3 4 8.8E-05 39.0 2.0 15 2-16 8-23 (187)
405 TIGR02238 recomb_DMC1 meiotic 65.2 5.6 0.00012 41.4 3.2 33 1-34 104-143 (313)
406 COG0470 HolB ATPase involved i 65.1 16 0.00035 38.1 6.8 17 1-17 32-49 (325)
407 TIGR01313 therm_gnt_kin carboh 65.0 4.2 9.2E-05 37.7 2.1 16 1-16 6-22 (163)
408 COG0703 AroK Shikimate kinase 64.8 4.6 9.9E-05 37.7 2.2 80 1-80 10-102 (172)
409 cd00464 SK Shikimate kinase (S 64.6 4.4 9.6E-05 37.0 2.1 16 1-16 7-23 (154)
410 PRK06761 hypothetical protein; 64.5 4.5 9.8E-05 41.3 2.3 19 1-19 11-30 (282)
411 PRK04196 V-type ATP synthase s 64.3 13 0.00027 41.0 5.8 80 2-85 152-252 (460)
412 PF05970 PIF1: PIF1-like helic 64.2 6.6 0.00014 42.0 3.6 26 1-26 30-56 (364)
413 cd02025 PanK Pantothenate kina 64.2 4.6 0.0001 39.8 2.2 16 2-17 8-24 (220)
414 TIGR03018 pepcterm_TyrKin exop 64.2 5.9 0.00013 38.5 3.0 27 1-27 44-72 (207)
415 PRK07594 type III secretion sy 64.1 12 0.00027 40.6 5.6 78 2-85 164-257 (433)
416 COG0194 Gmk Guanylate kinase [ 64.0 65 0.0014 30.6 9.5 54 61-115 81-135 (191)
417 PRK12724 flagellar biosynthesi 64.0 21 0.00046 38.6 7.3 15 1-15 231-246 (432)
418 CHL00175 minD septum-site dete 63.9 6.5 0.00014 40.3 3.4 18 1-18 24-42 (281)
419 PRK05688 fliI flagellum-specif 63.8 17 0.00036 39.8 6.5 17 71-87 256-272 (451)
420 PRK13236 nitrogenase reductase 63.8 4.3 9.4E-05 42.0 2.1 15 2-16 15-30 (296)
421 PRK06871 DNA polymerase III su 63.6 82 0.0018 33.0 11.4 43 95-144 158-200 (325)
422 PRK13705 plasmid-partitioning 63.6 4.3 9.3E-05 43.8 2.1 16 2-17 116-132 (388)
423 TIGR01360 aden_kin_iso1 adenyl 63.6 4.6 0.0001 38.4 2.1 15 1-15 11-26 (188)
424 cd01134 V_A-ATPase_A V/A-type 63.5 6.7 0.00015 41.1 3.3 84 2-91 166-272 (369)
425 PRK13946 shikimate kinase; Pro 63.4 4.8 0.0001 38.4 2.2 16 1-16 18-34 (184)
426 TIGR03346 chaperone_ClpB ATP-d 63.3 14 0.0003 44.5 6.5 18 1-18 603-621 (852)
427 TIGR01420 pilT_fam pilus retra 63.3 12 0.00027 39.6 5.5 78 1-87 130-208 (343)
428 PRK07399 DNA polymerase III su 63.2 93 0.002 32.5 11.8 47 95-146 174-220 (314)
429 PF09848 DUF2075: Uncharacteri 63.1 20 0.00044 38.1 7.1 27 1-27 9-38 (352)
430 PHA02519 plasmid partition pro 63.1 6.9 0.00015 42.2 3.5 17 2-18 116-133 (387)
431 PRK06002 fliI flagellum-specif 63.0 13 0.00028 40.6 5.5 17 71-87 252-268 (450)
432 COG1373 Predicted ATPase (AAA+ 63.0 59 0.0013 35.2 10.7 19 93-111 144-162 (398)
433 PF12775 AAA_7: P-loop contain 62.9 6.4 0.00014 40.2 3.0 13 71-83 98-110 (272)
434 cd00984 DnaB_C DnaB helicase C 62.9 13 0.00028 37.0 5.3 43 1-50 21-65 (242)
435 smart00367 LRR_CC Leucine-rich 62.8 4.3 9.2E-05 24.6 1.1 12 535-546 2-13 (26)
436 TIGR02640 gas_vesic_GvpN gas v 62.8 4.7 0.0001 40.9 2.1 16 1-16 29-45 (262)
437 PRK14965 DNA polymerase III su 62.7 47 0.001 38.0 10.3 43 96-141 171-214 (576)
438 PF00406 ADK: Adenylate kinase 62.6 5.2 0.00011 36.6 2.2 15 1-15 4-19 (151)
439 COG0464 SpoVK ATPases of the A 62.5 23 0.0005 39.7 7.7 24 95-118 402-425 (494)
440 TIGR02322 phosphon_PhnN phosph 62.4 4.9 0.00011 38.0 2.0 16 1-16 9-25 (179)
441 PF02367 UPF0079: Uncharacteri 62.3 5 0.00011 35.4 1.8 13 3-15 25-38 (123)
442 TIGR01026 fliI_yscN ATPase Fli 62.2 18 0.00039 39.6 6.5 17 71-87 251-267 (440)
443 PF01202 SKI: Shikimate kinase 62.1 4.7 0.0001 37.3 1.8 16 2-17 1-17 (158)
444 PRK14493 putative bifunctional 62.1 7.9 0.00017 39.5 3.5 26 2-28 10-36 (274)
445 cd00071 GMPK Guanosine monopho 62.0 5.1 0.00011 36.1 1.9 19 1-19 7-26 (137)
446 PRK13948 shikimate kinase; Pro 61.9 5.1 0.00011 38.1 2.0 16 1-16 18-34 (182)
447 TIGR02016 BchX chlorophyllide 61.9 7.6 0.00016 40.2 3.4 18 2-19 9-27 (296)
448 TIGR00176 mobB molybdopterin-g 61.9 5.7 0.00012 36.7 2.3 19 1-19 7-26 (155)
449 PF03796 DnaB_C: DnaB-like hel 61.8 16 0.00035 36.9 5.8 45 2-53 28-74 (259)
450 PRK11545 gntK gluconate kinase 61.7 5.5 0.00012 37.1 2.1 16 1-16 3-19 (163)
451 TIGR03815 CpaE_hom_Actino heli 61.7 7.5 0.00016 40.8 3.4 17 2-18 103-120 (322)
452 PF13086 AAA_11: AAA domain; P 61.7 16 0.00034 35.8 5.6 16 1-16 25-41 (236)
453 TIGR03496 FliI_clade1 flagella 61.6 17 0.00037 39.4 6.1 18 71-88 225-242 (411)
454 PRK12726 flagellar biosynthesi 61.6 20 0.00044 38.2 6.5 27 1-27 214-241 (407)
455 KOG2228 Origin recognition com 61.5 28 0.00062 36.1 7.2 81 1-83 57-147 (408)
456 cd02023 UMPK Uridine monophosp 61.5 5.1 0.00011 38.6 2.0 16 1-16 7-23 (198)
457 KOG0094 GTPase Rab6/YPT6/Ryh1, 61.4 17 0.00036 34.5 5.1 30 3-32 32-63 (221)
458 PF02223 Thymidylate_kin: Thym 60.9 5.4 0.00012 38.0 2.0 42 2-48 5-47 (186)
459 PF00625 Guanylate_kin: Guanyl 60.8 7.8 0.00017 36.8 3.1 27 1-27 10-37 (183)
460 KOG1532 GTPase XAB1, interacts 60.8 5 0.00011 40.0 1.7 21 1-21 27-48 (366)
461 KOG0989 Replication factor C, 60.7 43 0.00093 34.4 8.2 73 73-150 160-234 (346)
462 PRK06067 flagellar accessory p 60.7 15 0.00033 36.4 5.3 26 1-27 33-60 (234)
463 PF06745 KaiC: KaiC; InterPro 60.4 12 0.00027 36.8 4.6 27 1-27 27-55 (226)
464 PRK14532 adenylate kinase; Pro 60.1 5.8 0.00012 37.9 2.1 15 1-15 8-23 (188)
465 PRK11889 flhF flagellar biosyn 60.1 27 0.00057 37.6 7.0 27 1-27 249-276 (436)
466 cd02020 CMPK Cytidine monophos 59.9 6.2 0.00014 35.6 2.2 16 1-16 7-23 (147)
467 cd00550 ArsA_ATPase Oxyanion-t 59.8 7.9 0.00017 39.1 3.1 26 2-27 9-35 (254)
468 cd03114 ArgK-like The function 59.8 10 0.00022 34.7 3.6 18 1-18 7-25 (148)
469 PRK12339 2-phosphoglycerate ki 59.8 6 0.00013 38.2 2.1 15 1-15 11-26 (197)
470 PRK08533 flagellar accessory p 59.7 17 0.00036 36.1 5.3 26 1-27 32-59 (230)
471 PF08477 Miro: Miro-like prote 59.7 6 0.00013 34.2 1.9 14 2-15 8-22 (119)
472 TIGR03453 partition_RepA plasm 59.6 8.3 0.00018 41.7 3.4 17 2-18 114-131 (387)
473 COG1100 GTPase SAR1 and relate 59.6 5.1 0.00011 39.2 1.6 24 1-24 13-38 (219)
474 TIGR03878 thermo_KaiC_2 KaiC d 59.6 9.6 0.00021 38.6 3.6 26 1-27 44-71 (259)
475 PRK09099 type III secretion sy 59.5 19 0.00041 39.4 6.0 15 71-85 251-265 (441)
476 TIGR00347 bioD dethiobiotin sy 59.5 9 0.00019 35.6 3.2 25 2-26 7-32 (166)
477 PF03205 MobB: Molybdopterin g 59.5 6.2 0.00013 35.7 2.0 26 2-27 9-36 (140)
478 TIGR00602 rad24 checkpoint pro 59.3 4.3 9.2E-05 46.5 1.1 16 1-16 118-134 (637)
479 TIGR00150 HI0065_YjeE ATPase, 59.1 5.9 0.00013 35.4 1.8 15 2-16 31-46 (133)
480 COG1111 MPH1 ERCC4-like helica 59.1 83 0.0018 34.6 10.5 27 1-27 37-65 (542)
481 PRK05057 aroK shikimate kinase 59.0 5.9 0.00013 37.3 1.9 16 1-16 12-28 (172)
482 TIGR03600 phage_DnaB phage rep 58.9 28 0.0006 38.1 7.4 43 2-51 203-247 (421)
483 PF00693 Herpes_TK: Thymidine 58.9 7.7 0.00017 39.2 2.7 24 3-27 4-28 (281)
484 PF09140 MipZ: ATPase MipZ; I 58.9 5.7 0.00012 39.4 1.8 31 2-32 10-42 (261)
485 PRK14530 adenylate kinase; Pro 58.8 6.3 0.00014 38.6 2.1 16 1-16 11-27 (215)
486 PF03969 AFG1_ATPase: AFG1-lik 58.5 17 0.00036 38.8 5.4 66 2-83 71-137 (362)
487 PF12780 AAA_8: P-loop contain 58.4 35 0.00076 34.7 7.5 10 1-10 39-48 (268)
488 cd00880 Era_like Era (E. coli 58.3 5.5 0.00012 35.9 1.6 15 1-15 4-19 (163)
489 cd01672 TMPK Thymidine monopho 58.2 10 0.00022 36.2 3.5 18 1-18 8-26 (200)
490 cd01428 ADK Adenylate kinase ( 58.1 6.6 0.00014 37.5 2.1 15 1-15 7-22 (194)
491 COG0541 Ffh Signal recognition 58.0 31 0.00066 37.2 7.0 105 3-111 110-231 (451)
492 PRK04328 hypothetical protein; 57.9 18 0.00038 36.4 5.2 26 1-27 31-58 (249)
493 PRK03731 aroL shikimate kinase 57.8 6.7 0.00014 36.7 2.0 16 1-16 10-26 (171)
494 PRK09302 circadian clock prote 57.7 23 0.00049 39.9 6.6 74 2-82 282-372 (509)
495 PRK10463 hydrogenase nickel in 57.5 9.5 0.00021 39.0 3.1 23 2-24 113-136 (290)
496 TIGR02546 III_secr_ATP type II 56.9 24 0.00051 38.6 6.3 80 2-87 154-249 (422)
497 cd00561 CobA_CobO_BtuR ATP:cor 56.7 12 0.00027 34.5 3.5 56 66-133 87-149 (159)
498 PRK13869 plasmid-partitioning 56.6 9.5 0.00021 41.4 3.2 16 2-17 131-147 (405)
499 PF13555 AAA_29: P-loop contai 56.5 7.3 0.00016 29.6 1.6 13 2-14 32-45 (62)
500 PRK09270 nucleoside triphospha 56.4 7.5 0.00016 38.5 2.2 19 1-19 41-60 (229)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-68 Score=645.62 Aligned_cols=614 Identities=31% Similarity=0.501 Sum_probs=476.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEec--ch---hhhc-----CCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANV--RE---ESEK-----CGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDR 69 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v--~~---~~~~-----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~ 69 (715)
|||+|||||| ++|+++..+|+..+|+..+ +. .+.. ......++++++.++.... +... .....++++
T Consensus 215 ~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~-~~~~-~~~~~~~~~ 292 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK-DIKI-YHLGAMEER 292 (1153)
T ss_pred CCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCC-Cccc-CCHHHHHHH
Confidence 8999999999 9999999999999988531 11 1110 1112456777777765433 2111 234678899
Q ss_pred hcCCeEEEEEeCcc-------------------------CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCCh
Q 005085 70 LQRMKVFIVLDDVN-------------------------KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPE 124 (715)
Q Consensus 70 L~~kr~LlVLDDv~-------------------------r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~ 124 (715)
|++||+|||||||| |+++++..++++++|+|+.|+++|||+||+++||++..+++
T Consensus 293 L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~ 372 (1153)
T PLN03210 293 LKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPD 372 (1153)
T ss_pred HhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999998 88899988888999999999999999999999999887888
Q ss_pred hHHHHHHHHHHHhCCCcchhHHhhhcccCCChhHHHHHHHHhhccCCCCCcC----------------------------
Q 005085 125 DLLKHSETAVHYAKGNPLALQVLGSSFYGKSKPDWVNALNNLKRISGSDIYD---------------------------- 176 (715)
Q Consensus 125 ~~~~~~~~i~~~c~glPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~~~i~~---------------------------- 176 (715)
++++++++|+++|+|+||||+++|+.|++++.++|++++++++..++.++..
T Consensus 373 ~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~ 452 (1153)
T PLN03210 373 GFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGE 452 (1153)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCC
Confidence 8999999999999999999999999999999999999999988755433322
Q ss_pred CHHHHHHHHhhCCCCHHHhHHHHhcccceEEeCCeEeecHHHHHHHHHHHhhhcccCCCCcccccccchhhHHhhcCcCC
Q 005085 177 DREHVMWILSDDYCSVQYAMNVLVNKSLIKISYNKLQMHDLLQEMGREIVCQEFREKPEKRSRLWDYKDVCHVLEKNKGT 256 (715)
Q Consensus 177 ~~~~l~~il~~~~~~~~~~l~~L~~~~ll~~~~~~~~mhdli~~l~~~i~~~~~~~~~~~~~~lw~~e~~~~~l~~~~~~ 256 (715)
..+.+..++..+++.....++.|+++||++.+.+.+.|||++|+||++++.++. .+++++.++|.+++++.++.+++++
T Consensus 453 ~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~ 531 (1153)
T PLN03210 453 KVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGT 531 (1153)
T ss_pred CHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCccc
Confidence 445666777777778888899999999999998899999999999999999987 7899999999999999999999999
Q ss_pred CceeEEEecCCCCcccccChhhhcCCCCccEEEEeecC---------cccc--ccCCccc---cc-------------cc
Q 005085 257 DAIKSIFLDLSKIEEINLDPRAFTNMSNVRLLKFYISG---------HFDV--SKMSSKV---HL-------------QQ 309 (715)
Q Consensus 257 ~~~~~~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~---------~~~~--~~l~~~l---~~-------------~~ 309 (715)
+.++++++|.+......+.+.+|.+|++|+.|.+..+. .++. ..+|..+ .| ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~ 611 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPE 611 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCcc
Confidence 99999999999988888999999999999999996331 1111 2233222 11 26
Q ss_pred cccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 310 ESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+|+.|+++++.++.+|.++..+++|+.|+|++|..++.+|.++.+++|++|+|++|..+..+|..++++++|+.|++++|
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 89999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccC-------------------------
Q 005085 390 ESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIE------------------------- 443 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~------------------------- 443 (715)
..+..+|..+ ++++|+ |++++|..++.+|....+|+.|++++|.+..+|..+.
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 9999999877 699999 9999999999999999999999999999988886431
Q ss_pred -----CCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCC
Q 005085 444 -----CLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLE 518 (715)
Q Consensus 444 -----~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 518 (715)
..++|+.|++++|...+.+|.+++++++|+.|++++|..++.+|... ++++|+.|++++|..+..+|.. .+
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~ 846 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---ST 846 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cc
Confidence 12467777777777777788888888888888888887777777654 5666666666666444444321 13
Q ss_pred CCCEEEecCCCCCCC------CCCcCeEEecCcc-CCCCCCCCCCCCCCC-ceEE-------------------------
Q 005085 519 GLKQLKLTGCTKLGS------LPETKNWMHPYCK-HYPITRVKDYSSTSP-VQLI------------------------- 565 (715)
Q Consensus 519 ~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~-L~~~~lp~~l~~l~~-~~L~------------------------- 565 (715)
+|+.|+|++|.+... +++|+.|++++|+ |+. +|..+..++. +.++
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n 924 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDN 924 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccccccCCCCchhhhhhccc
Confidence 344444444433221 3444444444444 443 4443333333 3444
Q ss_pred ------------ecCCCCCCHHHHHHHHHhHccceec---cCCcccccccCccce-eecccc----ccceeeEEEEeCC
Q 005085 566 ------------FANCLKLNESIWADLQQRIRHMIIA---SRRLFCEKNIGLSDG-AAVSFD----FFIRYQLVIVKGP 624 (715)
Q Consensus 566 ------------l~~c~~l~~~~~~~~~~~~~~~~lp---ip~~~~~~~~~~~l~-~~~~~~----~~~~~~~~~~~~~ 624 (715)
+.+|.+|...+....+.......+| +|.||.|+..|.+++ +.++.. -+.+|++|++.+.
T Consensus 925 ~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~ 1003 (1153)
T PLN03210 925 IHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDS 1003 (1153)
T ss_pred ccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEec
Confidence 4455555543321111112223567 999999999999998 776543 2678999987753
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-49 Score=457.36 Aligned_cols=533 Identities=22% Similarity=0.304 Sum_probs=357.5
Q ss_pred CCCCcHHHHH-HHHHH---hhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC---CcchHHHHHHhcCC
Q 005085 1 MGGIGKTTIG-VVFNQ---FSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT---QKIPQYIRDRLQRM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~---~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~l~~~L~~k 73 (715)
|||+|||||| +++|+ ++.+||..+||+ ||+.|+ ..+|+++|+..++.......+ .+.+..|.+.|++|
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~----~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~k 261 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFT----TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGK 261 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEE-Eccccc----HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccC
Confidence 9999999999 99994 789999999998 888765 788999999998875543322 17888999999999
Q ss_pred eEEEEEeCcc-------------------------CChHHHHH-hCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhH
Q 005085 74 KVFIVLDDVN-------------------------KDKTILER-YGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDL 126 (715)
Q Consensus 74 r~LlVLDDv~-------------------------r~~~v~~~-~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~ 126 (715)
||+||||||| |++.||.. |++...++++.|.++|||.||++.||... ...+++
T Consensus 262 rfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i 341 (889)
T KOG4658|consen 262 RFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDI 341 (889)
T ss_pred ceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccH
Confidence 9999999999 99999998 89999999999999999999999999863 444558
Q ss_pred HHHHHHHHHHhCCCcchhHHhhhcccCC-ChhHHHHHHHHhhccCCCCCcC-----------------------------
Q 005085 127 LKHSETAVHYAKGNPLALQVLGSSFYGK-SKPDWVNALNNLKRISGSDIYD----------------------------- 176 (715)
Q Consensus 127 ~~~~~~i~~~c~glPLai~~~g~~L~~k-~~~~w~~~l~~l~~~~~~~i~~----------------------------- 176 (715)
+++|++|+++|+|+|||+.++|+.|++| +.+||+++.+.+.+....+..+
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycal 421 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCAL 421 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhcc
Confidence 9999999999999999999999999998 7789999999987763333311
Q ss_pred -------CHHHHHHHHhhCCC------------CHHHhHHHHhcccceEEeC-----CeEeecHHHHHHHHHHHhhhccc
Q 005085 177 -------DREHVMWILSDDYC------------SVQYAMNVLVNKSLIKISY-----NKLQMHDLLQEMGREIVCQEFRE 232 (715)
Q Consensus 177 -------~~~~l~~il~~~~~------------~~~~~l~~L~~~~ll~~~~-----~~~~mhdli~~l~~~i~~~~~~~ 232 (715)
+.+.++..|+++|+ .+..++.+|+++||+...+ ..++|||+++|||.+++.+....
T Consensus 422 FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~ 501 (889)
T KOG4658|consen 422 FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQ 501 (889)
T ss_pred CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccccc
Confidence 67889999999994 5778999999999999874 78999999999999999943321
Q ss_pred CCCCc-------------------ccc-cccchhhHHhhcCcCCCceeEEEecCCCCcccccChhhhcCCCCccEEEEee
Q 005085 233 KPEKR-------------------SRL-WDYKDVCHVLEKNKGTDAIKSIFLDLSKIEEINLDPRAFTNMSNVRLLKFYI 292 (715)
Q Consensus 233 ~~~~~-------------------~~l-w~~e~~~~~l~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~ 292 (715)
..... .++ +....+.. ..........+.+.+--.......++...|..|+.|++||++
T Consensus 502 ~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs- 579 (889)
T KOG4658|consen 502 EENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS- 579 (889)
T ss_pred ccceEEECCcCccccccccchhheeEEEEeccchhh-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC-
Confidence 11100 000 00001111 111111112333332221112444556668888888888887
Q ss_pred cCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCC-CC-c
Q 005085 293 SGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCT-GL-A 369 (715)
Q Consensus 293 n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~-~l-~ 369 (715)
++.+...+|..++.+-+|++|+++++.+..+|.+++++..|.+|++..+.....+|. ...+++||+|.+..-. .. .
T Consensus 580 -~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 580 -GNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred -CCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 345557788888777888888888888888888888888888888888766666666 4458888888887632 00 1
Q ss_pred ccCchhhcccccceEeccCcccccccCcccCCCcccE-----EEcCCCCCCCcCC--CCCCCCcEEeccCCCCcccCcc-
Q 005085 370 HIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-----IDCYKCVNLKEFP--RISGNVVELNLMCTPIEEVPLS- 441 (715)
Q Consensus 370 ~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-----L~l~~~~~l~~l~--~~~~~L~~L~L~~n~l~~lp~~- 441 (715)
..-..+.+|.+|+.+....... .+-..+..+..|. +.+.+|...+..+ ..+++|+.|.+..+.+.+....
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred hhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc
Confidence 1113344455555555433221 1111112222222 2222222222111 3455778888888877644321
Q ss_pred c-----CC-CCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc--hh
Q 005085 442 I-----EC-LPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP--SS 513 (715)
Q Consensus 442 ~-----~~-l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp--~~ 513 (715)
. .. ++++..+.+.+|.... .+.+....++|+.|.+..|.....+......+..+..+.+..+ ....++ .+
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~~~ 814 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRMLCS 814 (889)
T ss_pred ccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceeeec
Confidence 1 11 3345555555554332 2334456789999999998877766554444444443333222 111110 11
Q ss_pred hcC----------CCCCCEEEecCCCCCCCCCCcCeEEecCc
Q 005085 514 IEN----------LEGLKQLKLTGCTKLGSLPETKNWMHPYC 545 (715)
Q Consensus 514 l~~----------l~~L~~L~Ls~n~~~~~lp~L~~L~l~~n 545 (715)
.+. .+.|+.+.++.|+.++.+|.+.++.+.+|
T Consensus 815 l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 815 LGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred CCCCceeEecccCccchhheehhcCcccccCccccccceecc
Confidence 111 22366667777777777777777777775
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.3e-27 Score=284.96 Aligned_cols=332 Identities=19% Similarity=0.197 Sum_probs=241.4
Q ss_pred CCCCcccccccch-hhHHhhcCcCCCceeEEEecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccc-ccccc
Q 005085 233 KPEKRSRLWDYKD-VCHVLEKNKGTDAIKSIFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKV-HLQQE 310 (715)
Q Consensus 233 ~~~~~~~lw~~e~-~~~~l~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l-~~~~~ 310 (715)
++....+.|...+ .+. ..+.......+...+|++.+.+....+..|..+++|++|+++.| .+. ..+|..+ ....+
T Consensus 43 ~~~~~~~~w~~~~~~c~-w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~-~~ip~~~~~~l~~ 119 (968)
T PLN00113 43 DPLKYLSNWNSSADVCL-WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLS-GPIPDDIFTTSSS 119 (968)
T ss_pred CCcccCCCCCCCCCCCc-CcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccC-CcCChHHhccCCC
Confidence 4555556675432 222 11111111224556777776665556778999999999999844 221 2345443 25578
Q ss_pred ccEEEecCCCcc-cccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 311 SYRTQLSFKKVE-QIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 311 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
|++|++++|++. .+|. ..+++|++|+|++|.+...+|. ++.+++|++|+|++|...+.+|..++++++|++|++++
T Consensus 120 L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 888998888886 4443 4578888888888877667775 78888888888888877777888888888888888888
Q ss_pred cccccccCcccCCCcccE-EEcCCCCCCCcCCCC---CCCCcEEeccCCCCc-ccCcccCCCCCCCEEEccccccccccc
Q 005085 389 CESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI---SGNVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRLS 463 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~---~~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~lp 463 (715)
|.....+|..++++++|+ |++++|.....+|.. ..+|++|++++|.+. .+|..++++++|++|++++|.+.+.+|
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 877777888888888888 888887766666643 346788888888776 677778888888888888888777788
Q ss_pred ccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCC
Q 005085 464 TSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPE 536 (715)
Q Consensus 464 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~ 536 (715)
..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|+|++|.+.+. +++
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 8888888888888888877777888788888888888888866667777788888888888888877654 456
Q ss_pred cCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 537 TKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 537 L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
|+.|++++|.++. .+|.++..++. +.|++++|.
T Consensus 358 L~~L~Ls~n~l~~-~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 358 LTVLDLSTNNLTG-EIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred CcEEECCCCeeEe-eCChhHhCcCCCCEEECcCCE
Confidence 7888888887664 36666665555 666666553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.2e-26 Score=278.82 Aligned_cols=304 Identities=19% Similarity=0.159 Sum_probs=170.8
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcc-cccccCCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVE-QIWEGQKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~ 341 (715)
.++++++......|..++++++|++|+++.|... ..+|..+...++|++|++++|.+. .+|..+.++++|++|+|++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV--GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCccc--ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 4455555544445566677777777777633211 234444555566666666666665 4566666666666666666
Q ss_pred CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC
Q 005085 342 STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP 419 (715)
Q Consensus 342 n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~ 419 (715)
|.+...+|. ++++++|++|++++|...+.+|..++++++|+.|++++|.....+|..+.++++|+ |++++|.....+|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 655555554 66666666666666655556666666666666666666655555666666666666 6666655444444
Q ss_pred CC---CCCCcEEeccCCCCc-ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcc
Q 005085 420 RI---SGNVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMEL 495 (715)
Q Consensus 420 ~~---~~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 495 (715)
.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 32 234566666666554 44555556666666666666655555555556666666666665555555555555555
Q ss_pred cccccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEec
Q 005085 496 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFA 567 (715)
Q Consensus 496 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~ 567 (715)
|+.|++++|+..+.+|..+..+++|+.|++++|.+.+. +|+|+.|++++|.++. .+|..+..++. +.|+++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG-RINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC-ccChhhccCCCCcEEECc
Confidence 55555555544444555555555555555555544322 3445555555555443 23333333333 444444
Q ss_pred CC
Q 005085 568 NC 569 (715)
Q Consensus 568 ~c 569 (715)
+|
T Consensus 461 ~n 462 (968)
T PLN00113 461 RN 462 (968)
T ss_pred Cc
Confidence 44
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=5.3e-28 Score=251.27 Aligned_cols=222 Identities=27% Similarity=0.432 Sum_probs=172.9
Q ss_pred CCCCcHHHHH-HHHHH--hhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCC---CCC-cchHHHHHHhcCC
Q 005085 1 MGGIGKTTIG-VVFNQ--FSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDI---GTQ-KIPQYIRDRLQRM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~--~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~---~~~-~~~~~l~~~L~~k 73 (715)
|||+|||||| ++|++ ++.+|+.++|+. +++.. . ...+.++|+..+.....+. .+. +....+++.|+++
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~~---~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 101 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKNP---S-LEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDK 101 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-S---C-CHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCT
T ss_pred CCcCCcceeeeecccccccccccccccccc-ccccc---c-cccccccccccccccccccccccccccccccchhhhccc
Confidence 7999999999 99987 899999999998 55443 3 5788888999988775433 222 7789999999999
Q ss_pred eEEEEEeCcc-------------------------CChHHHHHhCc-CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhH
Q 005085 74 KVFIVLDDVN-------------------------KDKTILERYGT-QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDL 126 (715)
Q Consensus 74 r~LlVLDDv~-------------------------r~~~v~~~~~~-~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~ 126 (715)
|+|||||||| |+..++..++. ...|++++|+.+||++||++.++... ..++..
T Consensus 102 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 181 (287)
T PF00931_consen 102 RCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDL 181 (287)
T ss_dssp SEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTS
T ss_pred cceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999 77777765554 67899999999999999999998765 344556
Q ss_pred HHHHHHHHHHhCCCcchhHHhhhcccCC-ChhHHHHHHHHhhccCCCCCcCCHHHHHHHHhhCCCCHHHhHHHHhcccce
Q 005085 127 LKHSETAVHYAKGNPLALQVLGSSFYGK-SKPDWVNALNNLKRISGSDIYDDREHVMWILSDDYCSVQYAMNVLVNKSLI 205 (715)
Q Consensus 127 ~~~~~~i~~~c~glPLai~~~g~~L~~k-~~~~w~~~l~~l~~~~~~~i~~~~~~l~~il~~~~~~~~~~l~~L~~~~ll 205 (715)
++.+++|+++|+|+||||+++|+.|+.+ +..+|+.+++++...... ..+....+..++..+|..++..++ +||.
T Consensus 182 ~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~~l~~s~~~L~~~~~----~~f~ 256 (287)
T PF00931_consen 182 EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFSALELSYDSLPDELR----RCFL 256 (287)
T ss_dssp CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHHHHHHHHHSSHTCCH----HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceechhcCCccHH----HHHh
Confidence 7889999999999999999999999765 789999999988775422 223567888999999998888777 7777
Q ss_pred EEeCCeEeecHHHHHHHHHHHhhhcccCCCCcccccccchhhH
Q 005085 206 KISYNKLQMHDLLQEMGREIVCQEFREKPEKRSRLWDYKDVCH 248 (715)
Q Consensus 206 ~~~~~~~~mhdli~~l~~~i~~~~~~~~~~~~~~lw~~e~~~~ 248 (715)
+++ ++++...+....+.++|.+++++.
T Consensus 257 ~L~----------------~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 257 YLS----------------IFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HGG----------------GSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred hCc----------------CCCCCceECHHHHHHHHHHCCCCc
Confidence 766 677666666677788999999875
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.7e-26 Score=236.94 Aligned_cols=347 Identities=16% Similarity=0.143 Sum_probs=221.7
Q ss_pred EEecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCcccccccc------------------------ccEEEec
Q 005085 262 IFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQE------------------------SYRTQLS 317 (715)
Q Consensus 262 ~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~------------------------L~~L~L~ 317 (715)
-.+|++++....++...|.++++|+.+++..| ....+|...+...+ |+.||||
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N---~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN---ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccc---hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 35899999988999999999999999999844 22333433333344 4555555
Q ss_pred CCCccccccc-CCCCCCccEEeecCCCCCcccC-CCCCCCcceEEEEecCCCCcccC-chhhcccccceEeccCcccccc
Q 005085 318 FKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIP-EPSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAGCESLRC 394 (715)
Q Consensus 318 ~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~~~~~~~ 394 (715)
.|.|..+|.. +..-.++++|+|++|+++..-. .|..+.+|.+|.|+.|+ +..+| ..|.+|++|+.|+|..|. ++.
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-iri 235 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRI 235 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eee
Confidence 5555544432 3333455555555554332221 25555555555555553 23333 455556666666666653 222
Q ss_pred c-CcccCCCcccE-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEccccccccccccccc
Q 005085 395 F-PQNIHFISSIK-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSIC 467 (715)
Q Consensus 395 l-p~~~~~l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~ 467 (715)
. -..|..+++|+ |.+.++ .+..+.+ ...+|++|+|+.|++.++... +.+|+.|+.|++++|.+...-+++..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 2 23355566666 555553 2333322 345788999999999887654 67899999999999988888788888
Q ss_pred CCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEEecCCCCCCC----------CCC
Q 005085 468 KLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGS----------LPE 536 (715)
Q Consensus 468 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~----------lp~ 536 (715)
..++|+.|+|++|.+..--+..+..+..|++|+|++| .+..+.+ .+..+++|+.|||++|.+... +|+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 8899999999999877766778888888999999998 5555544 467788999999998887543 888
Q ss_pred cCeEEecCccCCCCCCCC-CCCCCCC-ceEEecCCCCCCH--HHHHHHHHhH---ccc------eec-cCCcccccccCc
Q 005085 537 TKNWMHPYCKHYPITRVK-DYSSTSP-VQLIFANCLKLNE--SIWADLQQRI---RHM------IIA-SRRLFCEKNIGL 602 (715)
Q Consensus 537 L~~L~l~~n~L~~~~lp~-~l~~l~~-~~L~l~~c~~l~~--~~~~~~~~~~---~~~------~lp-ip~~~~~~~~~~ 602 (715)
|++|++.||+|+. +|. .+..+.. +.||+.++.-.+- .+++.+..+. .+. .+. ++.|+.......
T Consensus 394 LrkL~l~gNqlk~--I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~ 471 (873)
T KOG4194|consen 394 LRKLRLTGNQLKS--IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQS 471 (873)
T ss_pred hhheeecCceeee--cchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhccccc
Confidence 9999999998887 664 3445555 7788876643221 2332221110 000 122 677776666667
Q ss_pred cceeeccccccceee
Q 005085 603 SDGAAVSFDFFIRYQ 617 (715)
Q Consensus 603 ~l~~~~~~~~~~~~~ 617 (715)
++...++.+-|...+
T Consensus 472 sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 472 SVIAKCAYPEPLADQ 486 (873)
T ss_pred ceeeeccCCcccccc
Confidence 777766655544433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=9.5e-26 Score=235.04 Aligned_cols=289 Identities=15% Similarity=0.158 Sum_probs=178.3
Q ss_pred hhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC--CCCCC
Q 005085 278 AFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE--PSETP 355 (715)
Q Consensus 278 ~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~ 355 (715)
.++.++.||.+++. .+....+.+|..+..++.|..|+||+|+++..|.++....++-+|+||+| .+..+|. +.++.
T Consensus 73 ELs~Lp~LRsv~~R-~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVR-DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLT 150 (1255)
T ss_pred hhccchhhHHHhhh-ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhH
Confidence 34455566666555 22333345666666667777777777777777777777777777777777 3455564 56777
Q ss_pred cceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCC-CCcCCC---CCCCCcEEec
Q 005085 356 NLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVN-LKEFPR---ISGNVVELNL 430 (715)
Q Consensus 356 ~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~-l~~l~~---~~~~L~~L~L 430 (715)
.|-+|||++| .+..+|+-+..|..|+.|+|++|+..-.--..+..+++|+ |.+++.+. +..+|. .+.||..+|+
T Consensus 151 DLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 7777777775 5666777777777777777777753221111122256666 66665433 234443 2345566677
Q ss_pred cCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccccccc-ccc
Q 005085 431 MCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASN-IKE 509 (715)
Q Consensus 431 ~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~ 509 (715)
++|++..+|..+.++++|+.|+|++|.+. .+....+...+|++|++|.| .+..+|..+..++.|+.|.+.+|.. ...
T Consensus 230 S~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 230 SENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred cccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccC
Confidence 77777777776677777777777776633 34344555566666666666 3456666666666666666666632 345
Q ss_pred cchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCC
Q 005085 510 LPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLN 573 (715)
Q Consensus 510 lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~ 573 (715)
+|+++++|.+|+.+..++|.+.-. ++.|+.|.|+.|.|-. +|+.|.-++. ..||+.++++|-
T Consensus 308 iPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT--LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT--LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred CccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee--chhhhhhcCCcceeeccCCcCcc
Confidence 666666666666666666654322 5566666666666544 6666666665 666666666664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=227.30 Aligned_cols=268 Identities=20% Similarity=0.251 Sum_probs=216.0
Q ss_pred hhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcccCCCCCC
Q 005085 276 PRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIPEPSET 354 (715)
Q Consensus 276 ~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~~~~l 354 (715)
|..+-++..|..|+++ +......|..+...+++-+|+||+|+|+.+|.. +-++..|-+||||+|++..-.|.+..+
T Consensus 96 P~diF~l~dLt~lDLS---hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLS---HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred Cchhcccccceeeecc---hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 4455678999999998 344456777777788999999999999999977 578899999999999654444458899
Q ss_pred CcceEEEEecCCCCcccCchhhcccccceEeccCccc-ccccCcccCCCcccE-EEcCCCCCCCcCCCCC---CCCcEEe
Q 005085 355 PNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCES-LRCFPQNIHFISSIK-IDCYKCVNLKEFPRIS---GNVVELN 429 (715)
Q Consensus 355 ~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~-~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~---~~L~~L~ 429 (715)
.+|++|+|++|.....--.-+..|++|+.|.+++... +..+|.++..+.+|. ++++. +.+..+|+.. .+|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheec
Confidence 9999999999853221112333567788888887543 345888888899999 88886 5667777654 4668899
Q ss_pred ccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCC-CccchhccCCccccccccccccccc
Q 005085 430 LMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIK 508 (715)
Q Consensus 430 L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~ 508 (715)
|++|.|+++....+.+.+|++|+++.|+ +..+|+.+++++.|+.|.+.+|.+. ..+|+.++.+.+|+.+..++| .++
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LE 329 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLE 329 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccc
Confidence 9999999998888889999999999987 6688999999999999999888654 568889999999999999988 899
Q ss_pred ccchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCcc-CCC
Q 005085 509 ELPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCK-HYP 549 (715)
Q Consensus 509 ~lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~-L~~ 549 (715)
-+|.++..+..|+.|.|+.|.+.+. +|.|+.||+..|+ |..
T Consensus 330 lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccC
Confidence 9999999999999999999988765 7889999999998 765
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=3e-23 Score=215.56 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=225.1
Q ss_pred EEecCCCCcccccChhhhcCCCCccEEEEeecCcccc--ccCCccccccccccEEEecCCCccccccc-CCCCCCccEEe
Q 005085 262 IFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDV--SKMSSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVD 338 (715)
Q Consensus 262 ~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~--~~l~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~ 338 (715)
..+++.++.+..+..+.+.-++.||+||++.|....+ ..+|.. .++++|+|++|.|+.+-.+ |..+.+|..|.
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~----~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK----VNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC----CCceEEeeccccccccccccccccchheeee
Confidence 4567777778888889999999999999996543222 344433 5899999999999988654 88889999999
Q ss_pred ecCCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCC
Q 005085 339 LNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNL 415 (715)
Q Consensus 339 L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l 415 (715)
|+.|++ ..+|. |.++++|+.|+|..|..-..--..|..|++|+.|.|..|....--...|..+..++ |+++.+ ++
T Consensus 204 LsrNri-ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l 281 (873)
T KOG4194|consen 204 LSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RL 281 (873)
T ss_pred cccCcc-cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hh
Confidence 999965 55554 78899999999998754333246788899999999999854443344566788888 888774 34
Q ss_pred CcCCC----CCCCCcEEeccCCCCcccC-cccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhc
Q 005085 416 KEFPR----ISGNVVELNLMCTPIEEVP-LSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEIL 490 (715)
Q Consensus 416 ~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~ 490 (715)
..+.+ .+..|+.|+|++|.|..+. +++...++|+.|+|++|++...-+.+|..+..|++|.|++|++...--..|
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 43332 3456789999999999774 457888999999999999888778889999999999999997665555568
Q ss_pred cCCcccccccccccccccccch---hhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCCCCCCCCCCCCC
Q 005085 491 EKMELLEEINLEEASNIKELPS---SIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYPITRVKDYSSTS 560 (715)
Q Consensus 491 ~~l~~L~~L~L~~n~~~~~lp~---~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp~~l~~l~ 560 (715)
..+++|++|+|++|.....+-+ .+..+++|+.|++.+|++-.. +++|++|||.+|.+.+ .-|..+..+.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS-Iq~nAFe~m~ 440 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS-IQPNAFEPME 440 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee-ecccccccch
Confidence 8899999999999965444433 467799999999999987654 8899999999999776 2355555542
Q ss_pred CceEE
Q 005085 561 PVQLI 565 (715)
Q Consensus 561 ~~~L~ 565 (715)
.+.|.
T Consensus 441 Lk~Lv 445 (873)
T KOG4194|consen 441 LKELV 445 (873)
T ss_pred hhhhh
Confidence 23343
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=9.1e-24 Score=210.50 Aligned_cols=297 Identities=15% Similarity=0.152 Sum_probs=183.0
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++.+.+...++ |.+++.+..++.++.++ .....+|..+.....|+.|+.++|.+..+|++++.+..|..|+..+|
T Consensus 72 vl~~~~n~l~~l-p~aig~l~~l~~l~vs~---n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 72 VLNVHDNKLSQL-PAAIGELEALKSLNVSH---NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred EEEeccchhhhC-CHHHHHHHHHHHhhccc---chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc
Confidence 444444444433 33455566666666552 23344555555555666666666666666666666666666666665
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCC-
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR- 420 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~- 420 (715)
.+....+++..+.+|..|++.+| .+..+|+..-+++.|++||...| .++.+|..++.+.+|+ |++.++ ++..+|+
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef 224 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEF 224 (565)
T ss_pred ccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCC
Confidence 44333334555556666666554 33344443334555555555554 4555555555555555 554442 2222221
Q ss_pred -------------------------CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEe
Q 005085 421 -------------------------ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSL 475 (715)
Q Consensus 421 -------------------------~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L 475 (715)
...++..|||+.|+++++|..+.-+++|.+||+++|. ...+|.+++++ +|+.|
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFL 302 (565)
T ss_pred CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeeh
Confidence 1223466677777777777766666677777776665 33455555555 55555
Q ss_pred ecCCCcCC------------------------------------------------------------------------
Q 005085 476 DLSYCINL------------------------------------------------------------------------ 483 (715)
Q Consensus 476 ~L~~n~~~------------------------------------------------------------------------ 483 (715)
-+.||++.
T Consensus 303 ~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVf 382 (565)
T KOG0472|consen 303 ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVF 382 (565)
T ss_pred hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHH
Confidence 55554321
Q ss_pred ------------------------------------------CccchhccCCcccccccccccccccccchhhcCCCCCC
Q 005085 484 ------------------------------------------ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 521 (715)
Q Consensus 484 ------------------------------------------~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 521 (715)
+-+|..+..+++|..|+|++| .+..+|..++.+..|+
T Consensus 383 ea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq 461 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQ 461 (565)
T ss_pred HHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhh
Confidence 122334556678889999988 8889999999999999
Q ss_pred EEEecCCCCCCC------------------------------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 522 QLKLTGCTKLGS------------------------------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 522 ~L~Ls~n~~~~~------------------------------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
.|+|+.|++-.. +.+|..||+.+|.+.. +|+.++++.+ ++|++.|++
T Consensus 462 ~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 462 TLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh--CChhhccccceeEEEecCCc
Confidence 999999876432 5579999999999988 9999999999 999999876
Q ss_pred C
Q 005085 571 K 571 (715)
Q Consensus 571 ~ 571 (715)
-
T Consensus 540 f 540 (565)
T KOG0472|consen 540 F 540 (565)
T ss_pred c
Confidence 3
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.5e-20 Score=228.56 Aligned_cols=256 Identities=20% Similarity=0.312 Sum_probs=217.4
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEecc
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMA 387 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~ 387 (715)
.+|+.|++.++.++.+|..+ ...+|+.|++++|.+ ..++. +..+++|++|+|++|..+..+| .++.+++|+.|+|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 56999999999999999887 478999999999854 55554 8899999999999988888887 48889999999999
Q ss_pred CcccccccCcccCCCcccE-EEcCCCCCCCcCCCC--CCCCcEEeccCCC-CcccCcccCCCCCCCEEEccccccccccc
Q 005085 388 GCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI--SGNVVELNLMCTP-IEEVPLSIECLPNLEILEMSFCYSLKRLS 463 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~--~~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~L~~n~~~~~lp 463 (715)
+|..+..+|..++++++|+ |++++|+.++.+|.. +.+|+.|++++|. +..+|. ..++|++|++++|.+ ..+|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i-~~lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAI-EEFP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcc-cccc
Confidence 9999999999999999999 999999999999874 4688999999874 445554 246788999988873 3455
Q ss_pred ccc------------------------------cCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchh
Q 005085 464 TSI------------------------------CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSS 513 (715)
Q Consensus 464 ~~~------------------------------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~ 513 (715)
..+ ...++|+.|++++|.....+|..++++++|+.|++++|..++.+|..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 422 11357888899999888889999999999999999999889999987
Q ss_pred hcCCCCCCEEEecCCCCCCCCC----CcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 514 IENLEGLKQLKLTGCTKLGSLP----ETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 514 l~~l~~L~~L~Ls~n~~~~~lp----~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
+ ++++|+.|+|++|..+..+| +|+.|++++|.++. +|.++..++. +.|++.+|++|..
T Consensus 822 ~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 822 I-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred C-CccccCEEECCCCCccccccccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCc
Confidence 6 79999999999998877644 79999999999988 9999999988 9999999999886
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=4.1e-23 Score=205.89 Aligned_cols=256 Identities=22% Similarity=0.266 Sum_probs=210.4
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHST 343 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~ 343 (715)
++++++....+. +.+.++..|.+|++.. .....+|..+.....++.|+.++|++..+|..+..+.+|+.|+.++|.
T Consensus 50 lils~N~l~~l~-~dl~nL~~l~vl~~~~---n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 50 LILSHNDLEVLR-EDLKNLACLTVLNVHD---NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhccCchhhcc-HhhhcccceeEEEecc---chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 344444443333 4567888899998883 334567888888889999999999999999999999999999999997
Q ss_pred CCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCCC
Q 005085 344 NLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRIS 422 (715)
Q Consensus 344 ~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~ 422 (715)
.....++++.+..|+.|+..+| .+..+|..++++.+|..|++.+|. +..+|+..-+++.|+ ++... +.++.+|..+
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~l 202 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPEL 202 (565)
T ss_pred eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhh
Confidence 7666667999999999999887 677889999999999999999984 555665555599999 88776 5788999877
Q ss_pred CCC---cEEeccCCCCcccCcccCCCCCCCEEEccccccccccccccc-CCCCccEeecCCCcCCCccchhccCCccccc
Q 005085 423 GNV---VELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSIC-KLKYLSSLDLSYCINLESFPEILEKMELLEE 498 (715)
Q Consensus 423 ~~L---~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 498 (715)
+.| ..|+|.+|+|..+| .|+++..|.+|+++.|. ...+|...+ .+++|.+||+..| .+.+.|..+..+.+|+.
T Consensus 203 g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLER 279 (565)
T ss_pred cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhh
Confidence 765 56788999999999 68999999999998877 556666555 8899999999998 46788888888999999
Q ss_pred ccccccccccccchhhcCCCCCCEEEecCCCCC
Q 005085 499 INLEEASNIKELPSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 499 L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 531 (715)
|++++| .+..+|.+++++ +|+.|.+.||++-
T Consensus 280 LDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNN-DISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCC-ccccCCcccccc-eeeehhhcCCchH
Confidence 999988 888899999999 8999999988853
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=1.6e-17 Score=188.05 Aligned_cols=228 Identities=16% Similarity=0.156 Sum_probs=117.7
Q ss_pred cccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 310 ESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+|+.|++++|+++.+|.. +++|++|+|++|. +..+|.+ .++|+.|++++|. +..+|.. ..+|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccCCc-hhhhhhc---hhhcCEEECcCC
Confidence 455555666666555532 3556666666553 2334432 2455566665552 3334432 234555566555
Q ss_pred ccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccC
Q 005085 390 ESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
.+..+|.. +++|+ |++++| .++.+|..+.+|+.|++++|.++.+|.. ..+|+.|+|++|.+. .+|..
T Consensus 293 -~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l--- 360 (788)
T PRK15387 293 -QLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL--- 360 (788)
T ss_pred -cccccccc---ccccceeECCCC-ccccCCCCcccccccccccCcccccccc---ccccceEecCCCccC-CCCCC---
Confidence 33344432 34455 555553 4445555555566666666666655531 235666666665533 34432
Q ss_pred CCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC---CCCcCeEEecCc
Q 005085 469 LKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS---LPETKNWMHPYC 545 (715)
Q Consensus 469 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~---lp~L~~L~l~~n 545 (715)
.++|+.|++++|.+. .+|.. .++|+.|++++| .+..+|.. .++|+.|++++|.+... +.+|+.|++++|
T Consensus 361 p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~N 432 (788)
T PRK15387 361 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGN-RLTSLPVL---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRN 432 (788)
T ss_pred Ccccceehhhccccc-cCccc---ccccceEEecCC-cccCCCCc---ccCCCEEEccCCcCCCCCcchhhhhhhhhccC
Confidence 234555666655433 34432 234566666666 44455532 24566666666655432 124566666666
Q ss_pred cCCCCCCCCCCCCCCC-ceEEecCC
Q 005085 546 KHYPITRVKDYSSTSP-VQLIFANC 569 (715)
Q Consensus 546 ~L~~~~lp~~l~~l~~-~~L~l~~c 569 (715)
.|+. +|..+..++. ..|+++++
T Consensus 433 qLt~--LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 433 QLTR--LPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cccc--cChHHhhccCCCeEECCCC
Confidence 6665 6666655555 66666655
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=5.6e-19 Score=193.55 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=95.9
Q ss_pred CCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccc----------------------ccccccccCCCCccEeecCC
Q 005085 422 SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSL----------------------KRLSTSICKLKYLSSLDLSY 479 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~----------------------~~lp~~~~~l~~L~~L~L~~ 479 (715)
..+|+++++++|+++.+|++++.+.+|+.+.+.+|.+. ..+|....++++|++|+|..
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 44678888888888888877777777777777666532 12233344455666666665
Q ss_pred CcCCC-------------------------------------------------ccchhccCCccccccccccccccccc
Q 005085 480 CINLE-------------------------------------------------SFPEILEKMELLEEINLEEASNIKEL 510 (715)
Q Consensus 480 n~~~~-------------------------------------------------~~p~~~~~l~~L~~L~L~~n~~~~~l 510 (715)
|.+.. ..-..+.++++|+.|+|++| .+..+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~f 398 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSF 398 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccC
Confidence 53321 00111334456677777776 56666
Q ss_pred ch-hhcCCCCCCEEEecCCCCCCC----------------------------CCCcCeEEecCccCCCCCCCCCCCCCCC
Q 005085 511 PS-SIENLEGLKQLKLTGCTKLGS----------------------------LPETKNWMHPYCKHYPITRVKDYSSTSP 561 (715)
Q Consensus 511 p~-~l~~l~~L~~L~Ls~n~~~~~----------------------------lp~L~~L~l~~n~L~~~~lp~~l~~l~~ 561 (715)
|+ .+.++..|++|+||+|++... +|.|+.+|++.|.|+...+|..... +.
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~ 477 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PN 477 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cc
Confidence 65 346666666777777665442 6789999999999887556655443 23
Q ss_pred -ceEEecCCCCCCH
Q 005085 562 -VQLIFANCLKLNE 574 (715)
Q Consensus 562 -~~L~l~~c~~l~~ 574 (715)
++||++|+..+..
T Consensus 478 LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 478 LKYLDLSGNTRLVF 491 (1081)
T ss_pred cceeeccCCccccc
Confidence 8999999886543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=6e-17 Score=184.66 Aligned_cols=237 Identities=17% Similarity=0.302 Sum_probs=131.5
Q ss_pred CccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEE
Q 005085 284 NVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNL 362 (715)
Q Consensus 284 ~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 362 (715)
+...|++..+ ....+|..+ ..+|+.|++++|+++.+|..+. .+|++|++++|.+ ..+|. + .++|+.|+|
T Consensus 179 ~~~~L~L~~~---~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKIL---GLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCC---CcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhh--hccccEEEC
Confidence 4556666622 223344332 1467788888888887776654 4788888887743 45554 3 246778888
Q ss_pred ecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCC-CCCCcEEeccCCCCcccCc
Q 005085 363 RNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI-SGNVVELNLMCTPIEEVPL 440 (715)
Q Consensus 363 ~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~-~~~L~~L~L~~n~l~~lp~ 440 (715)
++|. +..+|..+. .+|+.|++++| .+..+|..+. ++|+ |++++| .++.+|.. ..+|+.|++++|.++.+|.
T Consensus 249 s~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 249 SINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred cCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCc
Confidence 7764 446666553 46777777776 3445666443 3566 666654 44445432 2345666666666665554
Q ss_pred ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCC
Q 005085 441 SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGL 520 (715)
Q Consensus 441 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 520 (715)
.+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+ ..+|..+ .++|+.|+|++| .+..+|..+. .+|
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL 390 (754)
T PRK15370 322 TLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRN-ALTNLPENLP--AAL 390 (754)
T ss_pred ccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCC-cCCCCCHhHH--HHH
Confidence 332 45666666665533 3444332 4566666666543 2344433 235666666665 4445555442 245
Q ss_pred CEEEecCCCCCCC----------CCCcCeEEecCccCC
Q 005085 521 KQLKLTGCTKLGS----------LPETKNWMHPYCKHY 548 (715)
Q Consensus 521 ~~L~Ls~n~~~~~----------lp~L~~L~l~~n~L~ 548 (715)
+.|++++|++... +|++..|++.+|+++
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5555555554421 234455555555543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=3.8e-16 Score=176.95 Aligned_cols=248 Identities=16% Similarity=0.128 Sum_probs=124.9
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.+|++.+....+++ .+. .+|+.|++..|. +..+|.. .++|++|++++|+++.+|.. .++|+.|++++|
T Consensus 205 ~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~---Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLP--AHITTLVIPDNN---LTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred EEEcCCCCCCcCCc-chh--cCCCEEEccCCc---CCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45555554444433 332 367777776332 2233332 25677777777777777643 356677777776
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCC
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI 421 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~ 421 (715)
. +..+|.+ .++|+.|++++| .+..+|.. +++|+.|++++| .+..+|... .+|+ |.+++ +.++.+|..
T Consensus 273 ~-L~~Lp~l--p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~l 340 (788)
T PRK15387 273 P-LTHLPAL--PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLWAYN-NQLTSLPTL 340 (788)
T ss_pred c-hhhhhhc--hhhcCEEECcCC-cccccccc---ccccceeECCCC-ccccCCCCc---cccccccccc-Ccccccccc
Confidence 4 3344432 245666666665 34445532 356666777666 333444422 2344 44544 234455555
Q ss_pred CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 422 SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
+.+|+.|+|++|+++.+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. .++|+.|++
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdL 409 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMV 409 (788)
T ss_pred ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEc
Confidence 55566666666666665542 234455555555433 34432 234555555555332 23322 234555555
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~~ 549 (715)
++| .+..+|.. ..+|+.|++++|.+... +++|+.|+|++|+|++
T Consensus 410 S~N-~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 410 SGN-RLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCC-cCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 555 34444432 22444555555554422 3345555555555543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.7e-16 Score=179.30 Aligned_cols=256 Identities=15% Similarity=0.214 Sum_probs=187.4
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.+++.+.....++. .+ .++|+.|++..| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 182 ~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N---~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 182 ELRLKILGLTTIPA-CI--PEQITTLILDNN---ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred EEEeCCCCcCcCCc-cc--ccCCcEEEecCC---CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 35555554444432 22 257999999844 2335565432 589999999999999987664 58999999999
Q ss_pred CCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCC
Q 005085 343 TNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR 420 (715)
Q Consensus 343 ~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~ 420 (715)
.+ ..+|. +. .+|++|++++| .+..+|..+. ++|+.|++++| .+..+|..+. ++|+ |++++| .+..+|.
T Consensus 252 ~L-~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~ 321 (754)
T PRK15370 252 RI-TELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPE 321 (754)
T ss_pred cc-CcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCc
Confidence 65 46665 43 58999999987 4557887664 58999999998 4566776553 4788 888885 5566664
Q ss_pred -CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccc
Q 005085 421 -ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEI 499 (715)
Q Consensus 421 -~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 499 (715)
...+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.+. .+|..+. .+|+.|
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L 393 (754)
T PRK15370 322 TLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIM 393 (754)
T ss_pred cccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence 45689999999999999997664 79999999999854 577655 368999999999654 6776554 379999
Q ss_pred cccccccccccchhh----cCCCCCCEEEecCCCCCCC-CCCcCeEEecCccCC
Q 005085 500 NLEEASNIKELPSSI----ENLEGLKQLKLTGCTKLGS-LPETKNWMHPYCKHY 548 (715)
Q Consensus 500 ~L~~n~~~~~lp~~l----~~l~~L~~L~Ls~n~~~~~-lp~L~~L~l~~n~L~ 548 (715)
++++| .+..+|.++ ..++++..|+|.+|++... +++|+.| ++.+...
T Consensus 394 dLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L-l~s~~~~ 445 (754)
T PRK15370 394 QASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL-MSSVGYQ 445 (754)
T ss_pred hhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh-hhccccc
Confidence 99999 677777654 4458899999999998654 6666666 3444433
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=1.8e-17 Score=181.81 Aligned_cols=231 Identities=17% Similarity=0.238 Sum_probs=160.3
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEecc
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMA 387 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~ 387 (715)
.+|+++++++|+++.+|+.+..+.+|+.|+..+|.+ ..+|. +....+|+.|.+..| .+..+|.....++.|++|+|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 678888888888888888888888999998888855 66665 788888888888886 567778888888888888888
Q ss_pred CcccccccCcccCCCcc--cE-EEcCCCCCCCcCCCCC----CCCcEEeccCCCCc-ccCcccCCCCCCCEEEccccccc
Q 005085 388 GCESLRCFPQNIHFISS--IK-IDCYKCVNLKEFPRIS----GNVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSL 459 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~--L~-L~l~~~~~l~~l~~~~----~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~ 459 (715)
.| .+..+|..+..... |+ ++.+. +.+..+|..- ..|+.|.+.+|.++ ..-+.+.+..+|+.|+|++|++.
T Consensus 319 ~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 87 56667764432222 22 33332 3444444322 23466777777766 22223667777777777777643
Q ss_pred ccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC------
Q 005085 460 KRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS------ 533 (715)
Q Consensus 460 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~------ 533 (715)
......+.++..|+.|+|||| .+..+|..+.+++.|++|...+| .+...| .+.+++.|+.+|+|.|.+...
T Consensus 397 ~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333335667777777777777 45667777777777777777777 667777 577777888888877776543
Q ss_pred C-CCcCeEEecCcc
Q 005085 534 L-PETKNWMHPYCK 546 (715)
Q Consensus 534 l-p~L~~L~l~~n~ 546 (715)
. |+|++||++||.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 2 577888887776
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.61 E-value=3.3e-17 Score=189.50 Aligned_cols=345 Identities=17% Similarity=0.235 Sum_probs=198.4
Q ss_pred HHHHHhhCCCCHHHhHHHHhcccceEEeCCeEeecHHHHHHHHHHHhhhcccCCCCcccccccchhhHHhhcC-cCCCce
Q 005085 181 VMWILSDDYCSVQYAMNVLVNKSLIKISYNKLQMHDLLQEMGREIVCQEFREKPEKRSRLWDYKDVCHVLEKN-KGTDAI 259 (715)
Q Consensus 181 l~~il~~~~~~~~~~l~~L~~~~ll~~~~~~~~mhdli~~l~~~i~~~~~~~~~~~~~~lw~~e~~~~~l~~~-~~~~~~ 259 (715)
+..++..||..++.++| .||+|++ .+|+++.++.++++..|++|||+...... +.....
T Consensus 397 i~~iLklSyd~L~~~lK----~CFLyca----------------lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELK----SCFLYCA----------------LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred hHHhhhccHhhhhHHHH----HHHHhhc----------------cCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 34677778888887787 9999998 99999999999999999999988762211 111111
Q ss_pred eEEEecCCCCcccccChhhhcCCCCccEEEEee-------------------cCccccccCCccccccccccEEEecCCC
Q 005085 260 KSIFLDLSKIEEINLDPRAFTNMSNVRLLKFYI-------------------SGHFDVSKMSSKVHLQQESYRTQLSFKK 320 (715)
Q Consensus 260 ~~~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~-------------------n~~~~~~~l~~~l~~~~~L~~L~L~~~~ 320 (715)
..+.-++.+...+...... ++....+.+|+.. .........|+...| ...++..+-+|.
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~ 534 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRMSLMNNK 534 (889)
T ss_pred HHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEEEEeccc
Confidence 2221112111111110000 1111222222110 011111234555555 678888888999
Q ss_pred cccccccCCCCCCccEEeecCCCC-CcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCc
Q 005085 321 VEQIWEGQKKAPKLKYVDLNHSTN-LTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQ 397 (715)
Q Consensus 321 l~~lp~~~~~l~~L~~L~L~~n~~-~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 397 (715)
+..++.... .++|++|-+..|.. ...++. |..++.|++|||++|..+..+|+.++.|-+|++|++++. .+..+|.
T Consensus 535 ~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~ 612 (889)
T KOG4658|consen 535 IEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPS 612 (889)
T ss_pred hhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-Cccccch
Confidence 888876654 34899999998863 555554 888999999999999999999999999999999999995 6778999
Q ss_pred ccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccc--ccccccccccCCCCccE
Q 005085 398 NIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCY--SLKRLSTSICKLKYLSS 474 (715)
Q Consensus 398 ~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~--~~~~lp~~~~~l~~L~~ 474 (715)
+++++..|. |++.....+..+|. ....+++|++|.+.... .....-..+.++.+|+.
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~--------------------i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPG--------------------ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred HHHHHHhhheeccccccccccccc--------------------hhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 999999888 76666554444332 22335555555554322 11111222334444444
Q ss_pred eecCCCcCCCccchhccCCcccc----cccccccccccccchhhcCCCCCCEEEecCCCCCCC-------------CCCc
Q 005085 475 LDLSYCINLESFPEILEKMELLE----EINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------------LPET 537 (715)
Q Consensus 475 L~L~~n~~~~~~p~~~~~l~~L~----~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------------lp~L 537 (715)
+....... .+-+.+..++.|. .+.+.++ .....+.++..+.+|+.|.+.+|..... +|++
T Consensus 673 ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 673 LSITISSV--LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred heeecchh--HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 44433221 1112222333333 2222222 3344445556666666666666665432 3344
Q ss_pred CeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 538 KNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 538 ~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
..+.+.+|..-. .|.+....++ +.|.+..|..++.
T Consensus 750 ~~~~~~~~~~~r--~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 750 SKVSILNCHMLR--DLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHHHhhcccccc--ccchhhccCcccEEEEeccccccc
Confidence 444444444111 2333323333 6666666666655
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=2.5e-17 Score=146.52 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=45.6
Q ss_pred CcccCCCCCCCEEEcccccccc-cccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCC
Q 005085 439 PLSIECLPNLEILEMSFCYSLK-RLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENL 517 (715)
Q Consensus 439 p~~~~~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l 517 (715)
|..|+.++-|+.|++++|++.. .+|..|..++.|+.|+++.|. .+.+|..++++++|+.|.+..| .+-++|..++.+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~l 172 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDL 172 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHH
Confidence 3334444444444444443322 344444444444444444442 2334444444445555544444 444444444444
Q ss_pred CCCCEEEecCCCCCCCCCCcCeEEec
Q 005085 518 EGLKQLKLTGCTKLGSLPETKNWMHP 543 (715)
Q Consensus 518 ~~L~~L~Ls~n~~~~~lp~L~~L~l~ 543 (715)
+.|+.|.+.+|.+....|.|-.|++-
T Consensus 173 t~lrelhiqgnrl~vlppel~~l~l~ 198 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPELANLDLV 198 (264)
T ss_pred HHHHHHhcccceeeecChhhhhhhhh
Confidence 44444444444444333333333333
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=5e-17 Score=144.59 Aligned_cols=162 Identities=21% Similarity=0.318 Sum_probs=83.5
Q ss_pred CCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEc
Q 005085 330 KAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDC 409 (715)
Q Consensus 330 ~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l 409 (715)
++.++..|.||+|++....|.+..+.+|++|++++| .+.++|.+++.+++|++|++.-| .+..+|.+|+.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le--- 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE--- 105 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh---
Confidence 344444555555544333344555555555555543 34455555555555555555544 3444555555555554
Q ss_pred CCCCCCCcCCCCCCCCcEEeccCCCCc--ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc
Q 005085 410 YKCVNLKEFPRISGNVVELNLMCTPIE--EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP 487 (715)
Q Consensus 410 ~~~~~l~~l~~~~~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 487 (715)
.|||..|++. .+|..|..++.|+.|++++|. ...+|..++++++|+.|.+..|. +-++|
T Consensus 106 -----------------vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lp 166 (264)
T KOG0617|consen 106 -----------------VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLP 166 (264)
T ss_pred -----------------hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCc
Confidence 2233333332 344444555555555555554 34455555566666666665553 33456
Q ss_pred hhccCCcccccccccccccccccchhhcC
Q 005085 488 EILEKMELLEEINLEEASNIKELPSSIEN 516 (715)
Q Consensus 488 ~~~~~l~~L~~L~L~~n~~~~~lp~~l~~ 516 (715)
..++.++.|++|++.+| .+..+|+.+++
T Consensus 167 keig~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHHhcccc-eeeecChhhhh
Confidence 66666666666666666 55555555443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=3.6e-15 Score=157.47 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=36.5
Q ss_pred ccEEEecCCCcc-----cccccCCCCCCccEEeecCCCCCc------ccC-CCCCCCcceEEEEecCCCCcccCchhhcc
Q 005085 311 SYRTQLSFKKVE-----QIWEGQKKAPKLKYVDLNHSTNLT------RIP-EPSETPNLERMNLRNCTGLAHIPSYVQNF 378 (715)
Q Consensus 311 L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~n~~~~------~~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l 378 (715)
|++|+++++.++ .++..+...++|++|+++++.... .++ .+..+++|+.|++++|......+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 444444444442 233444455555555555553321 011 13345555555555554433333333333
Q ss_pred cc---cceEeccCcc
Q 005085 379 NK---LGNMIMAGCE 390 (715)
Q Consensus 379 ~~---L~~L~L~~~~ 390 (715)
.+ |++|++++|.
T Consensus 105 ~~~~~L~~L~ls~~~ 119 (319)
T cd00116 105 LRSSSLQELKLNNNG 119 (319)
T ss_pred hccCcccEEEeeCCc
Confidence 33 5555555553
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=9.1e-15 Score=154.38 Aligned_cols=100 Identities=10% Similarity=-0.062 Sum_probs=63.1
Q ss_pred EEecCCCcc--cccccCCCCCCccEEeecCCCCCcc----cCC-CCCCCcceEEEEecCCCC------cccCchhhcccc
Q 005085 314 TQLSFKKVE--QIWEGQKKAPKLKYVDLNHSTNLTR----IPE-PSETPNLERMNLRNCTGL------AHIPSYVQNFNK 380 (715)
Q Consensus 314 L~L~~~~l~--~lp~~~~~l~~L~~L~L~~n~~~~~----~p~-~~~l~~L~~L~L~~n~~l------~~~p~~~~~l~~ 380 (715)
|+|..+.++ ....-+..+.+|+.|++++|..... ++. +...++|++|+++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455565554 3334456677799999999865322 333 667788999999887543 123356677889
Q ss_pred cceEeccCcccccccCcccCCCcc---cE-EEcCCCC
Q 005085 381 LGNMIMAGCESLRCFPQNIHFISS---IK-IDCYKCV 413 (715)
Q Consensus 381 L~~L~L~~~~~~~~lp~~~~~l~~---L~-L~l~~~~ 413 (715)
|+.|++++|......+..+..+.. |+ |++++|.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 999999988665444443333333 66 5555543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=4.8e-15 Score=148.60 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=142.3
Q ss_pred ccccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccC-chhhcccccceEe
Q 005085 309 QESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMI 385 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~ 385 (715)
..-+.+.|..|.|+.+|.+ |+.+++||.||||+|.+...-|+ |.++++|-.|-+.+|+.+..+| ..|++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3557788889999998865 78899999999999866555565 8889888888888866788888 5678888888888
Q ss_pred ccCcccccccCcccCCCcccE-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCc-------------ccCcccCCCCC
Q 005085 386 MAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIE-------------EVPLSIECLPN 447 (715)
Q Consensus 386 L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~-------------~lp~~~~~l~~ 447 (715)
+.-|...-.....+..+++|. |.+.+ +.++.++. ...+++++.+..|.+- ..|..++...-
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 877754444445666677777 66555 23333332 1223344444444310 01111111111
Q ss_pred CCEEEc-------------------------cccccccccc-ccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 448 LEILEM-------------------------SFCYSLKRLS-TSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 448 L~~L~L-------------------------~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.....+ +.|......| ..|.++++|++|+|++|.+...-+.+|..+..+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111 1111122222 23566777777777777666666666777777777777
Q ss_pred cccccccccch-hhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCcc
Q 005085 502 EEASNIKELPS-SIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCK 546 (715)
Q Consensus 502 ~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~ 546 (715)
..| .+..+.. .+.++.+|+.|+|.+|+++.. +-+|.+|++-.|+
T Consensus 306 ~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 306 TRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred Ccc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 776 5444433 355666777777777666544 3345556655554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-14 Score=145.63 Aligned_cols=268 Identities=15% Similarity=0.102 Sum_probs=158.3
Q ss_pred EEecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEe-cCCCccccccc-CCCCCCccEEee
Q 005085 262 IFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQL-SFKKVEQIWEG-QKKAPKLKYVDL 339 (715)
Q Consensus 262 ~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L-~~~~l~~lp~~-~~~l~~L~~L~L 339 (715)
..+++..+.+..+.+++|+.+++||.|+|+.|..-.+ -|..+.....|..|-+ ++|+|+.+|.+ |+++..|+.|.+
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3455666777778888888888888888874322211 1333333333333333 33667766654 566666666666
Q ss_pred cCCCCCcccCC-CCCCCcceEEEEecCCCCcccCc-hhhcccccceEeccCccccc------------ccCcccCCCccc
Q 005085 340 NHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPS-YVQNFNKLGNMIMAGCESLR------------CFPQNIHFISSI 405 (715)
Q Consensus 340 ~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~-~~~~l~~L~~L~L~~~~~~~------------~lp~~~~~l~~L 405 (715)
.-|+..-...+ +..+++|..|.+.+|. ...++. .+..+..++.+.+..|..+. ..|..++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 66643222222 6666666666666653 333443 56666666666665554221 011111111111
Q ss_pred E-EEcCCCCCCCcCC--CCCCCCc----EEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeec
Q 005085 406 K-IDCYKCVNLKEFP--RISGNVV----ELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDL 477 (715)
Q Consensus 406 ~-L~l~~~~~l~~l~--~~~~~L~----~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L 477 (715)
. ..+.. .++..++ .+...++ .+....+....-|.. |..|++|+.|+|++|.+...-+.+|.++..++.|.|
T Consensus 227 ~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1 00000 0000000 0000111 111222222233332 788999999999999999888999999999999999
Q ss_pred CCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC
Q 005085 478 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 478 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
..|++-..-...|..+..|+.|+|.+|+...--|..|..+.+|.+|+|-.|++.-.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 99976544445688899999999999965566677788899999999999887654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=6.7e-12 Score=131.78 Aligned_cols=206 Identities=22% Similarity=0.348 Sum_probs=106.4
Q ss_pred EEecCCCcccccccC--CCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcc
Q 005085 314 TQLSFKKVEQIWEGQ--KKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCE 390 (715)
Q Consensus 314 L~L~~~~l~~lp~~~--~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~ 390 (715)
|.|++-.++.+|.+- -.+.--...||+.|++ ..+|. +..+..|+.|.|..| ....+|..+.++..|.+|||+.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN- 131 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-
Confidence 344444455444331 2233344456666643 34443 555566666666664 34556666677777777777665
Q ss_pred cccccCcccCCCcccE-EEcCCCCCCCcCCCCCC---CCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccc
Q 005085 391 SLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISG---NVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSI 466 (715)
Q Consensus 391 ~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~---~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~ 466 (715)
.+..+|..++.|+ |+ |.+++ ++++.+|+.++ .|..||.+.|.+..+|+.++.+.+|+.|.+..|+ ...+|..+
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El 208 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEEL 208 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHH
Confidence 4455565555443 33 22222 23333333222 2235555566666666666666666666666655 33444444
Q ss_pred cCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhh---cCCCCCCEEEecCC
Q 005085 467 CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSI---ENLEGLKQLKLTGC 528 (715)
Q Consensus 467 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l---~~l~~L~~L~Ls~n 528 (715)
..|+ |..||++.|+ ...+|-.|.+|+.|++|.|.+| -+..-|..+ +...-.++|+...|
T Consensus 209 ~~Lp-Li~lDfScNk-is~iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 209 CSLP-LIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hCCc-eeeeecccCc-eeecchhhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 4333 5566666553 3455555666666666666655 444444433 33344455555555
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=6.9e-12 Score=131.68 Aligned_cols=178 Identities=17% Similarity=0.293 Sum_probs=123.9
Q ss_pred cCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcc
Q 005085 300 KMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNF 378 (715)
Q Consensus 300 ~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l 378 (715)
.+|..+.-...|..|.|..|.+..+|..+.++..|.+|+|+.|++ ..+|. +..++ |++|.+++| .++.+|..++.+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence 445444444556666777777777777777777777777777743 44443 55554 677777765 566677777777
Q ss_pred cccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccc
Q 005085 379 NKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYS 458 (715)
Q Consensus 379 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~ 458 (715)
..|..||.+.| .+..+|..++.+.+|+ .|.+..|++..+|..+..| .|..||++.|+
T Consensus 166 ~tl~~ld~s~n-ei~slpsql~~l~slr--------------------~l~vrRn~l~~lp~El~~L-pLi~lDfScNk- 222 (722)
T KOG0532|consen 166 PTLAHLDVSKN-EIQSLPSQLGYLTSLR--------------------DLNVRRNHLEDLPEELCSL-PLIRLDFSCNK- 222 (722)
T ss_pred hhHHHhhhhhh-hhhhchHHhhhHHHHH--------------------HHHHhhhhhhhCCHHHhCC-ceeeeecccCc-
Confidence 77777777776 4555666566566555 6777788888999988844 58999999887
Q ss_pred cccccccccCCCCccEeecCCCcCCCccchhc---cCCccccccccccc
Q 005085 459 LKRLSTSICKLKYLSSLDLSYCINLESFPEIL---EKMELLEEINLEEA 504 (715)
Q Consensus 459 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~l~~L~~L~L~~n 504 (715)
...+|-.|.+|+.|++|-|.+|.+ .+.|..+ |..-=.++|+..-|
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 668899999999999999999975 4455433 33334567777766
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.5e-10 Score=122.24 Aligned_cols=194 Identities=27% Similarity=0.410 Sum_probs=108.9
Q ss_pred EEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCC-cceEEEEecCCCCcccCchhhcccccceEeccCccc
Q 005085 314 TQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETP-NLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCES 391 (715)
Q Consensus 314 L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~-~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~ 391 (715)
|.+..+.+..-...+..++.++.|++.+|. ...++. ...+. +|+.|++++| .+..+|..+..+++|+.|++++| .
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-h
Confidence 444444443333334444556666666553 333333 33332 5666666654 34444445555666666666655 2
Q ss_pred ccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCC
Q 005085 392 LRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKY 471 (715)
Q Consensus 392 ~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 471 (715)
+..+|...+.++ +++.|++++|.+..+|..+..+..|++|.+++|. ....+..+.++++
T Consensus 175 l~~l~~~~~~~~--------------------~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~ 233 (394)
T COG4886 175 LSDLPKLLSNLS--------------------NLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKN 233 (394)
T ss_pred hhhhhhhhhhhh--------------------hhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccc
Confidence 333333222233 3346666677777777665566667777777764 2234445666666
Q ss_pred ccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCCC
Q 005085 472 LSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSL 534 (715)
Q Consensus 472 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~l 534 (715)
+..|.+.+|.. ..++..++.+++|+.|++++| .+..++. ++.+.+|+.|++++|.+...+
T Consensus 234 l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 234 LSGLELSNNKL-EDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccccCCcee-eeccchhccccccceeccccc-ccccccc-ccccCccCEEeccCccccccc
Confidence 77776666532 333555666777777777777 6666655 666777777777776665543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=9.5e-10 Score=119.69 Aligned_cols=189 Identities=23% Similarity=0.326 Sum_probs=139.1
Q ss_pred EEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhccc-ccceEeccCcccccccCcccCCCcccEEEcCCCCC
Q 005085 336 YVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFN-KLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVN 414 (715)
Q Consensus 336 ~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~ 414 (715)
.+++..+........+..++.++.|++.+| ....+|.....+. +|+.|++++| .+..+|..++.++.|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~-------- 166 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLK-------- 166 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhcccccc--------
Confidence 577777755455555666678888888876 5666777777774 8888888886 4555554455555554
Q ss_pred CCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCc
Q 005085 415 LKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKME 494 (715)
Q Consensus 415 l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 494 (715)
.|+++.|.+.++|...+.+++|+.|++++|. ...+|..+.....|++|.+++|. ....+..+..+.
T Consensus 167 ------------~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~ 232 (394)
T COG4886 167 ------------NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLK 232 (394)
T ss_pred ------------ccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcc
Confidence 7788888888888876688899999999887 55666666666678899988875 334555677888
Q ss_pred ccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCccCCC
Q 005085 495 LLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 495 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~L~~ 549 (715)
++..|.+.+| .+..++..++.+++|+.|++++|.+... +.+|+.|+++++.+..
T Consensus 233 ~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 233 NLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccccCCc-eeeeccchhccccccceeccccccccccccccccCccCEEeccCccccc
Confidence 8888888777 6666677788888899999888877654 5678888888888665
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.8e-10 Score=111.90 Aligned_cols=125 Identities=23% Similarity=0.219 Sum_probs=105.8
Q ss_pred CCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccc
Q 005085 423 GNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLE 502 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 502 (715)
..|+++||++|.|+.+..+..-+|.++.|++++|.+...- .+..+++|+.|||++|. +..+-.+-..+.+.+.|.|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 4568999999999999999999999999999999865433 37889999999999985 45555555678889999999
Q ss_pred ccccccccchhhcCCCCCCEEEecCCCCC--------CCCCCcCeEEecCccCCCCCCCC
Q 005085 503 EASNIKELPSSIENLEGLKQLKLTGCTKL--------GSLPETKNWMHPYCKHYPITRVK 554 (715)
Q Consensus 503 ~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~--------~~lp~L~~L~l~~n~L~~~~lp~ 554 (715)
+| .++.+ ++++++-+|..||+++|++. +.+|.|+.+.|.+|+|.. +|+
T Consensus 361 ~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~--~vd 416 (490)
T KOG1259|consen 361 QN-KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG--SVD 416 (490)
T ss_pred hh-hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc--cch
Confidence 99 88887 46899999999999999864 459999999999999887 664
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.5e-10 Score=118.30 Aligned_cols=201 Identities=16% Similarity=0.149 Sum_probs=121.4
Q ss_pred CCCCCCccEEeecCCCCCcccC---CCCCCCcceEEEEecCCCCcc--cCchhhcccccceEeccCcccccccCcccCCC
Q 005085 328 QKKAPKLKYVDLNHSTNLTRIP---EPSETPNLERMNLRNCTGLAH--IPSYVQNFNKLGNMIMAGCESLRCFPQNIHFI 402 (715)
Q Consensus 328 ~~~l~~L~~L~L~~n~~~~~~p---~~~~l~~L~~L~L~~n~~l~~--~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 402 (715)
-+++.+|+.+.|.++. ....+ ....+++++.|||++|-...- +-.....|++|+.|+|+.|....-...
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----- 190 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----- 190 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-----
Confidence 3456666666666653 23333 245667777777776522111 113445677777777777643221111
Q ss_pred cccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCc--ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCC
Q 005085 403 SSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIE--EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYC 480 (715)
Q Consensus 403 ~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n 480 (715)
.. ...+.+++.|.|+.|.++ .+-.....+|+|+.|+|.+|.....-.....-+..|++|+|++|
T Consensus 191 --~~------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 191 --NT------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred --cc------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 00 012233445666666655 22222456788888888888534333334456778888999888
Q ss_pred cCCCcc-chhccCCccccccccccccccccc--chh-----hcCCCCCCEEEecCCCCCCC--------CCCcCeEEecC
Q 005085 481 INLESF-PEILEKMELLEEINLEEASNIKEL--PSS-----IENLEGLKQLKLTGCTKLGS--------LPETKNWMHPY 544 (715)
Q Consensus 481 ~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~l--p~~-----l~~l~~L~~L~Ls~n~~~~~--------lp~L~~L~l~~ 544 (715)
.+...- -...+.++.|+.|+++.| .+.++ |+. ...+++|++|++..|++... +++|+.|.+..
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 655422 134678888999998888 55443 333 35678999999999988332 77888888888
Q ss_pred ccCCC
Q 005085 545 CKHYP 549 (715)
Q Consensus 545 n~L~~ 549 (715)
|.|+.
T Consensus 336 n~ln~ 340 (505)
T KOG3207|consen 336 NYLNK 340 (505)
T ss_pred ccccc
Confidence 88765
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.3e-09 Score=102.16 Aligned_cols=115 Identities=29% Similarity=0.326 Sum_probs=45.1
Q ss_pred CCcEEeccCCCCcccCcccC-CCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhc-cCCcccccccc
Q 005085 424 NVVELNLMCTPIEEVPLSIE-CLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEIL-EKMELLEEINL 501 (715)
Q Consensus 424 ~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L 501 (715)
++++|+|++|.|+.+.. ++ .+.+|+.|++++|.+.. ++ .+..+++|++|++++|.+.. +++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence 35688888888888753 55 57889999999887553 43 57778889999999886554 44333 46888999999
Q ss_pred cccccccccc--hhhcCCCCCCEEEecCCCCCCC----------CCCcCeEEec
Q 005085 502 EEASNIKELP--SSIENLEGLKQLKLTGCTKLGS----------LPETKNWMHP 543 (715)
Q Consensus 502 ~~n~~~~~lp--~~l~~l~~L~~L~Ls~n~~~~~----------lp~L~~L~l~ 543 (715)
++| .+..+. ..+..+++|+.|+|.+|++... +|+|+.||-.
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 888 554443 3467788888888888887654 7888887653
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.4e-10 Score=115.81 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred hhHHhhcCcCCCceeEEEecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccccc
Q 005085 246 VCHVLEKNKGTDAIKSIFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIW 325 (715)
Q Consensus 246 ~~~~l~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp 325 (715)
|-+....+...+..+.+.+|-......... +....+++++.|+++.|.......+-.....+++|+.|+++.|.+...+
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 333444444555666666665555443332 4555677777777764422221111111122245555555555544333
Q ss_pred cc--CCCCCCccEEeecCCCCCc-ccCC-CCCCCcceEEEEecC
Q 005085 326 EG--QKKAPKLKYVDLNHSTNLT-RIPE-PSETPNLERMNLRNC 365 (715)
Q Consensus 326 ~~--~~~l~~L~~L~L~~n~~~~-~~p~-~~~l~~L~~L~L~~n 365 (715)
++ ...+++|+.|.|+.|.+.. .+-. ...+|+|+.|+|+.|
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 22 1234455555555543321 1111 234444455555444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=1e-09 Score=106.78 Aligned_cols=107 Identities=30% Similarity=0.350 Sum_probs=84.0
Q ss_pred CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 422 SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.+.++.|+++.|.|..+.. +..+++|+.|+|++|. +..+..+-.++.++++|.|++|. +..+ ..++.+-+|..|++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccc
Confidence 3445688888888888866 8889999999999987 44555566678899999999984 3333 34778889999999
Q ss_pred cccccccccc--hhhcCCCCCCEEEecCCCCCCC
Q 005085 502 EEASNIKELP--SSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 502 ~~n~~~~~lp--~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
++| .++.+. .+++++|.|++|.|.+|++...
T Consensus 382 ~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 382 SSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999 666553 3689999999999999998765
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.75 E-value=2e-09 Score=107.37 Aligned_cols=229 Identities=15% Similarity=0.121 Sum_probs=134.5
Q ss_pred ccccEEEecCCCcc-----cccccCCCCCCccEEeecCCCCCc----ccCC--------CCCCCcceEEEEecCCCCccc
Q 005085 309 QESYRTQLSFKKVE-----QIWEGQKKAPKLKYVDLNHSTNLT----RIPE--------PSETPNLERMNLRNCTGLAHI 371 (715)
Q Consensus 309 ~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~n~~~~----~~p~--------~~~l~~L~~L~L~~n~~l~~~ 371 (715)
..++.++|++|.+. .+...+.+.++|+..++++- +++ .+|+ +-.+++|++|+||+|-....-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 44555566666554 23334555566666666653 222 2221 345567777777777543333
Q ss_pred C----chhhcccccceEeccCcccccccCcccCC-CcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc-----c
Q 005085 372 P----SYVQNFNKLGNMIMAGCESLRCFPQNIHF-ISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL-----S 441 (715)
Q Consensus 372 p----~~~~~l~~L~~L~L~~~~~~~~lp~~~~~-l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~-----~ 441 (715)
+ .-+.....|++|.|.+|..-..--..++. +..|. . ........+|+++...+|++..-+. .
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~----~----~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA----V----NKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH----H----HhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 2 23455677777777777432110000000 00000 0 0011223355677777777765443 2
Q ss_pred cCCCCCCCEEEcccccccc----cccccccCCCCccEeecCCCcCCC----ccchhccCCcccccccccccccccc----
Q 005085 442 IECLPNLEILEMSFCYSLK----RLSTSICKLKYLSSLDLSYCINLE----SFPEILEKMELLEEINLEEASNIKE---- 509 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~---- 509 (715)
+...+.|+.+.+..|.+.. .+...+..+++|+.|||..|.+.. .+...+..+++|+.|+++.| .+..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~ 259 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAI 259 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHH
Confidence 5667888888888876542 233456788888888888886653 23445677788888888888 5432
Q ss_pred -cchhh-cCCCCCCEEEecCCCCCCC-----------CCCcCeEEecCccC
Q 005085 510 -LPSSI-ENLEGLKQLKLTGCTKLGS-----------LPETKNWMHPYCKH 547 (715)
Q Consensus 510 -lp~~l-~~l~~L~~L~Ls~n~~~~~-----------lp~L~~L~l~~n~L 547 (715)
+...+ ...|+|+.|.+.+|.+... .|.|..|+|++|.+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11222 3468889999999887754 78899999999987
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.74 E-value=1.7e-08 Score=115.20 Aligned_cols=107 Identities=23% Similarity=0.243 Sum_probs=70.8
Q ss_pred CcEEeccCCCCc-ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccc
Q 005085 425 VVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEE 503 (715)
Q Consensus 425 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 503 (715)
++.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 456677777666 5666677777777777777776667776677777777777777776667777777777777777777
Q ss_pred cccccccchhhcCC-CCCCEEEecCCCCC
Q 005085 504 ASNIKELPSSIENL-EGLKQLKLTGCTKL 531 (715)
Q Consensus 504 n~~~~~lp~~l~~l-~~L~~L~Ls~n~~~ 531 (715)
|...+.+|..+..+ .++..+++.+|..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 75556666666543 34455555555443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.7e-08 Score=94.62 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=25.1
Q ss_pred cccEEEecCCCcccccccCC-CCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchh-hcccccceEecc
Q 005085 310 ESYRTQLSFKKVEQIWEGQK-KAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYV-QNFNKLGNMIMA 387 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~-~~l~~L~~L~L~ 387 (715)
++++|+|++|.|+.+. .++ .+.+|+.|+|++| .+..++.+..+++|++|++++|. +..++..+ ..+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECc
Confidence 5677788888887763 444 5778888888888 45667778888888888888874 44454444 357788888887
Q ss_pred Ccc
Q 005085 388 GCE 390 (715)
Q Consensus 388 ~~~ 390 (715)
+|.
T Consensus 97 ~N~ 99 (175)
T PF14580_consen 97 NNK 99 (175)
T ss_dssp TS-
T ss_pred CCc
Confidence 763
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=8.4e-08 Score=109.62 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=89.9
Q ss_pred CCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEec
Q 005085 447 NLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 526 (715)
Q Consensus 447 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls 526 (715)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999889999999999999999999997778899999999999999999
Q ss_pred CCCCCCCCC--------CcCeEEecCcc-CCC
Q 005085 527 GCTKLGSLP--------ETKNWMHPYCK-HYP 549 (715)
Q Consensus 527 ~n~~~~~lp--------~L~~L~l~~n~-L~~ 549 (715)
+|.+.+.+| ++..+++.+|+ +..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999887755 34567777776 443
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=6.3e-07 Score=94.20 Aligned_cols=152 Identities=16% Similarity=0.282 Sum_probs=98.9
Q ss_pred CcccE-EEcCCCCCCCcCCCCCCCCcEEeccC-CCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCC
Q 005085 402 ISSIK-IDCYKCVNLKEFPRISGNVVELNLMC-TPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSY 479 (715)
Q Consensus 402 l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~ 479 (715)
+..++ |++++| .++.+|..+.+|++|.+++ +.++.+|..+ .++|++|++++|..+..+|. +|+.|++++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCC
Confidence 56677 888888 7888888888899999976 5667777654 35889999988865666664 466666665
Q ss_pred CcC--CCccchhccCCcccccccccccccc--cccchhhcCC-CCCCEEEecCCCCCCC----CCCcCeEEecCccCCC-
Q 005085 480 CIN--LESFPEILEKMELLEEINLEEASNI--KELPSSIENL-EGLKQLKLTGCTKLGS----LPETKNWMHPYCKHYP- 549 (715)
Q Consensus 480 n~~--~~~~p~~~~~l~~L~~L~L~~n~~~--~~lp~~l~~l-~~L~~L~Ls~n~~~~~----lp~L~~L~l~~n~L~~- 549 (715)
+.. ++.+|. +|+.|.+.+++.. ..+|. .+ ++|++|++++|..... .++|+.|+++.|....
T Consensus 122 n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sL 192 (426)
T PRK15386 122 SATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTW 192 (426)
T ss_pred CCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCcccccccCcEEEecccccccc
Confidence 432 334443 4667766543211 11121 12 5899999999886542 3479999998774222
Q ss_pred ----CCCCCCCCCCCCceEEecCCCCCCHHHH
Q 005085 550 ----ITRVKDYSSTSPVQLIFANCLKLNESIW 577 (715)
Q Consensus 550 ----~~lp~~l~~l~~~~L~l~~c~~l~~~~~ 577 (715)
..+|+++ .|++.+|.++....+
T Consensus 193 eI~~~sLP~nl------~L~f~n~lkL~~~~f 218 (426)
T PRK15386 193 NISFEGFPDGL------DIDLQNSVLLSPDVF 218 (426)
T ss_pred cCccccccccc------EechhhhcccCHHHh
Confidence 2344433 677888877776433
No 40
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.45 E-value=4.2e-06 Score=85.91 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=87.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh-----cCCe
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRL-----QRMK 74 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr 74 (715)
++|+||||++ ++++.....=-..+|+.+ . ..+ ..++.+.+...++....+.........+.+.+ .+++
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-~----~~~-~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQERVVAAKLVN-T----RVD-AEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEeeeeC-C----CCC-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999 998876531011223321 1 123 56777778777655432211112333444333 6788
Q ss_pred EEEEEeCccC-----------------------------ChHHHHHhC----------cCcEEEcCCCCHHHHHHHHHhh
Q 005085 75 VFIVLDDVNK-----------------------------DKTILERYG----------TQRIYEVEGLNCNEVLRLFSSC 115 (715)
Q Consensus 75 ~LlVLDDv~r-----------------------------~~~v~~~~~----------~~~~~~l~~L~~~es~~LF~~~ 115 (715)
.++|+||++. ......... ....+++++++.+|..+++...
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~ 204 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHR 204 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHH
Confidence 9999999980 000000000 1235789999999999988876
Q ss_pred hcCCC-CCChhH-HHHHHHHHHHhCCCcchhHHhhhcc
Q 005085 116 AFKEN-HCPEDL-LKHSETAVHYAKGNPLALQVLGSSF 151 (715)
Q Consensus 116 af~~~-~~~~~~-~~~~~~i~~~c~glPLai~~~g~~L 151 (715)
+-... .....+ .+..+.|++.++|.|..|..++..+
T Consensus 205 l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 205 LERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 53211 111112 4678999999999999998888765
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=1.5e-08 Score=101.36 Aligned_cols=180 Identities=21% Similarity=0.217 Sum_probs=111.8
Q ss_pred cCCCCCCccEEeecCCCCCcccCC-----CCCCCcceEEEEecCCCCcccC-ch-------------hhcccccceEecc
Q 005085 327 GQKKAPKLKYVDLNHSTNLTRIPE-----PSETPNLERMNLRNCTGLAHIP-SY-------------VQNFNKLGNMIMA 387 (715)
Q Consensus 327 ~~~~l~~L~~L~L~~n~~~~~~p~-----~~~l~~L~~L~L~~n~~l~~~p-~~-------------~~~l~~L~~L~L~ 387 (715)
.+...++|++|+||+|.+-...+. +..+..|+.|.|.+|.. +... .. ++.-++|+.+...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 345567888888888866533332 46678888888887732 2211 11 1222334444443
Q ss_pred CcccccccCcccCCCcccEEEcCCCCCCCcCC--------CCCCCCcEEeccCCCCc-----ccCcccCCCCCCCEEEcc
Q 005085 388 GCESLRCFPQNIHFISSIKIDCYKCVNLKEFP--------RISGNVVELNLMCTPIE-----EVPLSIECLPNLEILEMS 454 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~--------~~~~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~ 454 (715)
+| ++...+ ...++|+.+.++.|.|. .+...+.++++|+.|+|.
T Consensus 166 rN------------------------rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 166 RN------------------------RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred cc------------------------ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence 33 222222 12234556666666554 233457889999999999
Q ss_pred cccccc----cccccccCCCCccEeecCCCcCCCccc----hh-ccCCccccccccccccccc----ccchhhcCCCCCC
Q 005085 455 FCYSLK----RLSTSICKLKYLSSLDLSYCINLESFP----EI-LEKMELLEEINLEEASNIK----ELPSSIENLEGLK 521 (715)
Q Consensus 455 ~n~~~~----~lp~~~~~l~~L~~L~L~~n~~~~~~p----~~-~~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~ 521 (715)
+|.+.. .+...+..+++|+.|++++|.....-. .. -...++|+.|.+.+|.... .+-.++...+.|.
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 997653 344567788899999999996554322 11 2347889999999993322 2334566789999
Q ss_pred EEEecCCCCC
Q 005085 522 QLKLTGCTKL 531 (715)
Q Consensus 522 ~L~Ls~n~~~ 531 (715)
.|+|++|.+-
T Consensus 302 kLnLngN~l~ 311 (382)
T KOG1909|consen 302 KLNLNGNRLG 311 (382)
T ss_pred HhcCCccccc
Confidence 9999999873
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.9e-09 Score=102.19 Aligned_cols=176 Identities=22% Similarity=0.255 Sum_probs=105.5
Q ss_pred ccccEEEecCCCcc--cccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccC--chhhcccccce
Q 005085 309 QESYRTQLSFKKVE--QIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIP--SYVQNFNKLGN 383 (715)
Q Consensus 309 ~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p--~~~~~l~~L~~ 383 (715)
..|++|||+...|+ ++-.-++.+.+|+.|.|.+++....+-. +.+-.+|+.|+|++|...++.. -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46888899888887 3433457788888888888765544443 7778888888888887665543 34567778888
Q ss_pred EeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCC----CcccCcccCCCCCCCEEEccccccc
Q 005085 384 MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTP----IEEVPLSIECLPNLEILEMSFCYSL 459 (715)
Q Consensus 384 L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~----l~~lp~~~~~l~~L~~L~L~~n~~~ 459 (715)
|+|+.|......-..+ +.....+|+.|+|+++. ...+..-...+++|..|||++|..+
T Consensus 265 LNlsWc~l~~~~Vtv~------------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVA------------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred cCchHhhccchhhhHH------------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 8888875443211100 00112233344444331 1111111356778888888777543
Q ss_pred c-cccccccCCCCccEeecCCCcCCCccch---hccCCccccccccccc
Q 005085 460 K-RLSTSICKLKYLSSLDLSYCINLESFPE---ILEKMELLEEINLEEA 504 (715)
Q Consensus 460 ~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n 504 (715)
. ..-..|.+++.|++|.++.|.. .+|+ .+...|+|.+|++.+|
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3 2233466777777777777742 3343 3556667777776665
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=4.1e-08 Score=107.19 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=27.0
Q ss_pred cccccccccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCcc
Q 005085 496 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCK 546 (715)
Q Consensus 496 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~ 546 (715)
|+.+++++| .+..++..+..+..+..|++.+|.+... .+.+..+....+.
T Consensus 234 L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 234 LRELYLSGN-RISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNK 288 (414)
T ss_pred HHHHhcccC-ccccccccccccccccccchhhccccccccccccchHHHhccCcch
Confidence 566666666 4444444555666666666666655443 3344444444444
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.7e-07 Score=69.56 Aligned_cols=58 Identities=33% Similarity=0.364 Sum_probs=44.1
Q ss_pred CCcEEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCc
Q 005085 424 NVVELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCI 481 (715)
Q Consensus 424 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~ 481 (715)
+|++|++++|+++.+|. .|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46678888888888875 46778888888888877766666677788888888888775
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=1.1e-07 Score=103.79 Aligned_cols=215 Identities=20% Similarity=0.151 Sum_probs=115.3
Q ss_pred ccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceE
Q 005085 305 VHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNM 384 (715)
Q Consensus 305 l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 384 (715)
+...++|..|++.+|.++.+...+..+++|++|+|++| .+..+..+..++.|+.|++++|.. ..+ ..+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcc-hhc-cCCccchhhhcc
Confidence 34456777888888888877655777888888888887 556677777777788888888743 333 344457777788
Q ss_pred eccCcccccccCcc-cCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccccccc
Q 005085 385 IMAGCESLRCFPQN-IHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLS 463 (715)
Q Consensus 385 ~L~~~~~~~~lp~~-~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp 463 (715)
++++|.....-+ . ...+.+|+ .+++.+|.+..+.. +..+..+..+++..|.+...-+
T Consensus 168 ~l~~n~i~~ie~-~~~~~~~~l~--------------------~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 168 DLSYNRIVDIEN-DELSELISLE--------------------ELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cCCcchhhhhhh-hhhhhccchH--------------------HHhccCCchhcccc-hHHHHHHHHhhcccccceeccC
Confidence 887774332222 1 23344444 44444444443321 2223333333444444322111
Q ss_pred ccccCCC--CccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCC---------
Q 005085 464 TSICKLK--YLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG--------- 532 (715)
Q Consensus 464 ~~~~~l~--~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~--------- 532 (715)
+..+. +|+.+++++|.+. ..+..+..+..+..|++.+| .+..+. .+...+.+..+....+++..
T Consensus 226 --l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 226 --LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSN-RISNLE-GLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred --cccchhHHHHHHhcccCccc-cccccccccccccccchhhc-cccccc-cccccchHHHhccCcchhcchhhhhcccc
Confidence 11222 2666666666433 22244555666666666665 333221 23334444444444444332
Q ss_pred --CCCCcCeEEecCccCCC
Q 005085 533 --SLPETKNWMHPYCKHYP 549 (715)
Q Consensus 533 --~lp~L~~L~l~~n~L~~ 549 (715)
..+.++...+.++++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccCcccc
Confidence 24556666666666443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.3e-08 Score=110.04 Aligned_cols=120 Identities=24% Similarity=0.227 Sum_probs=89.7
Q ss_pred CCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchh-ccCCccccccccc
Q 005085 424 NVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEI-LEKMELLEEINLE 502 (715)
Q Consensus 424 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~ 502 (715)
.|...+.++|.+..+..++.-++.|+.|+|+.|+....- .+..++.|++|||++|. +..+|.. ...+ .|..|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence 356677788888888888888888899999888855433 57788888999998885 4555542 2223 38888888
Q ss_pred ccccccccchhhcCCCCCCEEEecCCCCCCC--------CCCcCeEEecCccCCC
Q 005085 503 EASNIKELPSSIENLEGLKQLKLTGCTKLGS--------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 503 ~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~--------lp~L~~L~l~~n~L~~ 549 (715)
+| .++.+- ++.+|.+|+.||+++|-+.+. +..|+.|.|.||+|--
T Consensus 241 nN-~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 NN-ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cc-HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 88 777764 578888899999998876654 5578888898888653
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=5.1e-08 Score=99.62 Aligned_cols=255 Identities=16% Similarity=0.234 Sum_probs=154.2
Q ss_pred cCCCCCCccEEeecCCCCCcccC--CC-CCCCcceEEEEecCCCCcccC--chhhcccccceEeccCcccccc--cCccc
Q 005085 327 GQKKAPKLKYVDLNHSTNLTRIP--EP-SETPNLERMNLRNCTGLAHIP--SYVQNFNKLGNMIMAGCESLRC--FPQNI 399 (715)
Q Consensus 327 ~~~~l~~L~~L~L~~n~~~~~~p--~~-~~l~~L~~L~L~~n~~l~~~p--~~~~~l~~L~~L~L~~~~~~~~--lp~~~ 399 (715)
...++++++.|.+.+|..+++.. .+ ..+++|++|++..|..++... .....+++|++|+++.|+.+.. +..-.
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 34567888888888886544332 12 467888888888876655432 2334578888888888876554 11223
Q ss_pred CCCcccE-EEcCCCCCCCc--C---CCCCCCCcEEeccCC-CCcccCcc--cCCCCCCCEEEccccccccccc--ccccC
Q 005085 400 HFISSIK-IDCYKCVNLKE--F---PRISGNVVELNLMCT-PIEEVPLS--IECLPNLEILEMSFCYSLKRLS--TSICK 468 (715)
Q Consensus 400 ~~l~~L~-L~l~~~~~l~~--l---~~~~~~L~~L~L~~n-~l~~lp~~--~~~l~~L~~L~L~~n~~~~~lp--~~~~~ 468 (715)
.++..++ +.+.+|..++. + ......+..+++..+ .++...-+ -..+..|+.|+.++|...+..+ .-..+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 3455566 65666655432 1 111222345555443 23322111 2356788899988887544322 12346
Q ss_pred CCCccEeecCCCcCCCccc--hhccCCcccccccccccccccc--cchhhcCCCCCCEEEecCCCCCCC-----------
Q 005085 469 LKYLSSLDLSYCINLESFP--EILEKMELLEEINLEEASNIKE--LPSSIENLEGLKQLKLTGCTKLGS----------- 533 (715)
Q Consensus 469 l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~--lp~~l~~l~~L~~L~Ls~n~~~~~----------- 533 (715)
.++|+.|-+++|...+..- ..-.+.+.|+.+++.+|..+.. +..--.+++.|+.|.|++|.....
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 6889999999987544322 2235678899999988843332 222235678899999998876554
Q ss_pred -CCCcCeEEecCcc-CCCCCCCCCCCCCCC-ceEEecCCCCCCHHHHHHHHH
Q 005085 534 -LPETKNWMHPYCK-HYPITRVKDYSSTSP-VQLIFANCLKLNESIWADLQQ 582 (715)
Q Consensus 534 -lp~L~~L~l~~n~-L~~~~lp~~l~~l~~-~~L~l~~c~~l~~~~~~~~~~ 582 (715)
+..|..+.+++|+ +++ ..-..+...+. +.+++.+|...+.+.+..+++
T Consensus 399 ~~~~l~~lEL~n~p~i~d-~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITD-ATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred cccccceeeecCCCCchH-HHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 4568888899998 443 22222333334 678888888887766665555
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=8.4e-08 Score=98.08 Aligned_cols=248 Identities=16% Similarity=0.194 Sum_probs=157.2
Q ss_pred CCccEEeecCCCCCcccCC---CCCCCcceEEEEecCCCCcccC--chhhcccccceEeccCccccccc--CcccCCCcc
Q 005085 332 PKLKYVDLNHSTNLTRIPE---PSETPNLERMNLRNCTGLAHIP--SYVQNFNKLGNMIMAGCESLRCF--PQNIHFISS 404 (715)
Q Consensus 332 ~~L~~L~L~~n~~~~~~p~---~~~l~~L~~L~L~~n~~l~~~p--~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~ 404 (715)
..||.|.++++.-...-+- ...+++++.|.+.+|..++... ..-..+++|++|++..|..++.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4577888888865544442 4689999999999998665432 22345889999999998776642 223456889
Q ss_pred cE-EEcCCCCCCCc-----CCCCCCCCcEEeccCCCCc---ccCcccCCCCCCCEEEccccccccccc--ccccCCCCcc
Q 005085 405 IK-IDCYKCVNLKE-----FPRISGNVVELNLMCTPIE---EVPLSIECLPNLEILEMSFCYSLKRLS--TSICKLKYLS 473 (715)
Q Consensus 405 L~-L~l~~~~~l~~-----l~~~~~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~n~~~~~lp--~~~~~l~~L~ 473 (715)
|+ ++++.|+.+.. +.....+++.+.+.++.=. .+-..-....-+..+++..|....... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99 99999987765 1122233445544443111 111111344456666666664433221 1223567889
Q ss_pred EeecCCCcCCCccch--hccCCcccccccccccccccccchh--hcCCCCCCEEEecCCCCCCC---------CCCcCeE
Q 005085 474 SLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKELPSS--IENLEGLKQLKLTGCTKLGS---------LPETKNW 540 (715)
Q Consensus 474 ~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~lp~~--l~~l~~L~~L~Ls~n~~~~~---------lp~L~~L 540 (715)
.|+.++|...+..+- -..+..+|+.|.+++|+.++..-.. -.+.+.|+.+++..|..... +|.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 999998876544331 2345788999999999766554221 25678999999998876543 7899999
Q ss_pred EecCcc-CCCC---CCCCCCCCCCC-ceEEecCCCCCCHHHHHH
Q 005085 541 MHPYCK-HYPI---TRVKDYSSTSP-VQLIFANCLKLNESIWAD 579 (715)
Q Consensus 541 ~l~~n~-L~~~---~lp~~l~~l~~-~~L~l~~c~~l~~~~~~~ 579 (715)
.+++|. +++. .+...-..+.. ..+.+.+|+.+++...+.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 999998 6661 11111122222 788999999988855443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.3e-06 Score=67.09 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=27.3
Q ss_pred CccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEEecCCC
Q 005085 471 YLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCT 529 (715)
Q Consensus 471 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~ 529 (715)
+|++|++++|.+....+..+..+++|++|++++| .+..+++ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4445555554333222234455555555555554 3333332 44555555555555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=7.7e-07 Score=87.15 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=105.0
Q ss_pred ccccEEEecCCCccccc---ccCCCCCCccEEeecCCCCCcccCCC-CCCCcceEEEEecCCCCc-ccCchhhcccccce
Q 005085 309 QESYRTQLSFKKVEQIW---EGQKKAPKLKYVDLNHSTNLTRIPEP-SETPNLERMNLRNCTGLA-HIPSYVQNFNKLGN 383 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp---~~~~~l~~L~~L~L~~n~~~~~~p~~-~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L~~ 383 (715)
..++.|+|.+|.|.... .-..+||+|++|+|+.|.....+..+ ..+.+|++|.|.|..... ...+.+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 67889999999887543 33678999999999999776666555 467789999998753322 22345566777777
Q ss_pred EeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc---cCCCCCCCEEEcccccccc
Q 005085 384 MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS---IECLPNLEILEMSFCYSLK 460 (715)
Q Consensus 384 L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~---~~~l~~L~~L~L~~n~~~~ 460 (715)
|.++.|. ++.+++..+-++..... +..++.+..+.++-|+...
T Consensus 151 lHmS~N~----------------------------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 151 LHMSDNS----------------------------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred hhhccch----------------------------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 7777652 11222232322222111 1112222222222233222
Q ss_pred cccccccCCCCccEeecCCCcCCCcc-chhccCCcccccccccccccccccc--hhhcCCCCCCEEEecCCCCCCC
Q 005085 461 RLSTSICKLKYLSSLDLSYCINLESF-PEILEKMELLEEINLEEASNIKELP--SSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 461 ~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
-+|++..+.+..|++.+.- -+....++.+..|+|+.+ .+.+.. +.+.+++.|..|.++++++...
T Consensus 197 -------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 197 -------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred -------hcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 2345666666666443222 123455666677777777 554432 3456677777777777776655
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4e-07 Score=89.08 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=70.7
Q ss_pred CCcEEeccCCCCc-ccCcccCCCCCCCEEEcccccccccc--cccccCCCCccEeecCCCcCCCccch-hccC-Cccccc
Q 005085 424 NVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRL--STSICKLKYLSSLDLSYCINLESFPE-ILEK-MELLEE 498 (715)
Q Consensus 424 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~l--p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~-l~~L~~ 498 (715)
+|+.|.|.++.+. .+-..+..-.+|+.|+|+.|...... .--+.+++.|..|+|+.|......-. .... -++|..
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 3444444444443 22233444455555555554432211 11234455555555555543322110 0111 124555
Q ss_pred cccccccc-c--cccchhhcCCCCCCEEEecCCCCCCC--------CCCcCeEEecCccCCCCCCCCCC---CCCCC-ce
Q 005085 499 INLEEASN-I--KELPSSIENLEGLKQLKLTGCTKLGS--------LPETKNWMHPYCKHYPITRVKDY---SSTSP-VQ 563 (715)
Q Consensus 499 L~L~~n~~-~--~~lp~~l~~l~~L~~L~Ls~n~~~~~--------lp~L~~L~l~~n~L~~~~lp~~l---~~l~~-~~ 563 (715)
|+|+|+.. + ..+..-...+++|.+||||+|..+.. ++.|++|.++.|..- .|..+ .+.+. .+
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEE
Confidence 55555421 1 11111235678888888888776654 777888888888722 23333 33333 77
Q ss_pred EEecCCCC
Q 005085 564 LIFANCLK 571 (715)
Q Consensus 564 L~l~~c~~ 571 (715)
|++.+|-.
T Consensus 368 Ldv~g~vs 375 (419)
T KOG2120|consen 368 LDVFGCVS 375 (419)
T ss_pred EEeccccC
Confidence 88887743
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.3e-05 Score=84.45 Aligned_cols=130 Identities=16% Similarity=0.274 Sum_probs=82.3
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
.++.+|+++++.++.+|. -..+|+.|.+++|..+..+|+.- .++|++|++++|..+..+|. +|+.|++++
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc------ccceEEeCC
Confidence 567777777887887772 23468888888877777777521 35788888888876666664 355566654
Q ss_pred cc--cccccCcccCCCcccE-EEcCCCCCC--CcCC-CCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccc
Q 005085 389 CE--SLRCFPQNIHFISSIK-IDCYKCVNL--KEFP-RISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFC 456 (715)
Q Consensus 389 ~~--~~~~lp~~~~~l~~L~-L~l~~~~~l--~~l~-~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 456 (715)
+. .+..+|.+ |+ |.+.+++.. ..+| ..+.+|++|++++|....+|..+. .+|+.|+++.+
T Consensus 122 n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 122 SATDSIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCcccccCcch------HhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 32 24445543 44 444332211 2223 234678889998887766665443 58888888765
No 53
>PRK06893 DNA replication initiation factor; Validated
Probab=97.94 E-value=7.7e-05 Score=74.31 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=77.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC----cchHHH---HH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ----KIPQYI---RD 68 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~----~~~~~l---~~ 68 (715)
+.|+|||+|| ++.+.+..+.....++. +... .....++...+...+- +++.. +....+ -+
T Consensus 47 ~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~~-------~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSKS-------QYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEee-HHHh-------hhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 4799999999 99998766666667776 3211 1111122222221110 11110 111111 22
Q ss_pred Hh-cCCeE-EEEEeCcc------CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 005085 69 RL-QRMKV-FIVLDDVN------KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 69 ~L-~~kr~-LlVLDDv~------r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~gl 140 (715)
.+ ..++. +|+=-+.- ..+++...++...++++++++.++.++++.++++...-.-+ +++..-+++++.|-
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d 196 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRD 196 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCC
Confidence 22 22333 34434432 45678888877889999999999999999999875432211 35677788888765
Q ss_pred cchh
Q 005085 141 PLAL 144 (715)
Q Consensus 141 PLai 144 (715)
.-++
T Consensus 197 ~r~l 200 (229)
T PRK06893 197 MHTL 200 (229)
T ss_pred HHHH
Confidence 5443
No 54
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.88 E-value=0.00018 Score=87.29 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=112.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CC---------CCC-cchHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DI---------GTQ-KIPQY 65 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~---------~~~-~~~~~ 65 (715)
++|.||||++ +...+ ++.++|++ +....+ + .......++..+..... .. ... .....
T Consensus 40 paG~GKTtl~~~~~~~----~~~~~w~~-l~~~d~--~-~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 40 PAGYGKTTLISQWAAG----KNNLGWYS-LDESDN--Q-PERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CCCCCHHHHHHHHHHh----CCCeEEEe-cCcccC--C-HHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 5899999999 76643 33688997 543321 2 33344444444421110 00 000 12222
Q ss_pred HHHHhc--CCeEEEEEeCcc--CChHHHHHh-----------------------------CcCcEEEcC----CCCHHHH
Q 005085 66 IRDRLQ--RMKVFIVLDDVN--KDKTILERY-----------------------------GTQRIYEVE----GLNCNEV 108 (715)
Q Consensus 66 l~~~L~--~kr~LlVLDDv~--r~~~v~~~~-----------------------------~~~~~~~l~----~L~~~es 108 (715)
+-..+. +.+++|||||+. .+..+...+ -.+...++. +|+.+|+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~ 191 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEA 191 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHH
Confidence 333332 678999999997 111111100 012234555 8999999
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhcccCCC--hhH--H-------HHHHHHhhccCCCCCcCC
Q 005085 109 LRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSSFYGKS--KPD--W-------VNALNNLKRISGSDIYDD 177 (715)
Q Consensus 109 ~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~k~--~~~--w-------~~~l~~l~~~~~~~i~~~ 177 (715)
.++|........ + .+...++.+.|+|.|+++..++..+++.. ... | ..+.+.+....-.....+
T Consensus 192 ~~ll~~~~~~~~--~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~ 266 (903)
T PRK04841 192 QQFFDQRLSSPI--E---AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLE 266 (903)
T ss_pred HHHHHhccCCCC--C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHH
Confidence 999987653321 1 23468899999999999998887665331 110 1 001111100000000000
Q ss_pred HHHH-HHHHhhCC------------CCHHHhHHHHhcccceEEe-C---CeEeecHHHHHHHHHHHh
Q 005085 178 REHV-MWILSDDY------------CSVQYAMNVLVNKSLIKIS-Y---NKLQMHDLLQEMGREIVC 227 (715)
Q Consensus 178 ~~~l-~~il~~~~------------~~~~~~l~~L~~~~ll~~~-~---~~~~mhdli~~l~~~i~~ 227 (715)
..++ ...=.... -+....++.|.+..++... + ..++.|++++++...-..
T Consensus 267 ~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 267 TRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1111 11101111 1345678899988886533 2 368899999998776653
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=2.7e-07 Score=100.25 Aligned_cols=123 Identities=22% Similarity=0.203 Sum_probs=73.3
Q ss_pred cceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCC
Q 005085 356 NLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPI 435 (715)
Q Consensus 356 ~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l 435 (715)
.|.+.+.+.| .+..+..++.-++.|++|||+.|+....- .+..++ +|++|||+.|.+
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~--------------------~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP--------------------KLKHLDLSYNCL 221 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc--------------------cccccccccchh
Confidence 4555555554 45555566666777777777776433211 122222 345777888877
Q ss_pred cccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCcc-chhccCCccccccccccc
Q 005085 436 EEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESF-PEILEKMELLEEINLEEA 504 (715)
Q Consensus 436 ~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n 504 (715)
..+|.- ...+ .|+.|.+++|.. ..+ .++.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.||
T Consensus 222 ~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 222 RHVPQLSMVGC-KLQLLNLRNNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccccccchhhh-hheeeeecccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 777753 2223 388888887763 333 24677888888888887443311 123556677788888887
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=4.2e-05 Score=79.83 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCCCcHHHHH-HHHHHhh-ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC---c---chHHHHHH--h
Q 005085 1 MGGIGKTTIG-VVFNQFS-QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ---K---IPQYIRDR--L 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~-~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~---~---~~~~l~~~--L 70 (715)
+||+|||||| +||+.+. ++|+.++||..+.+ .. .+ +.++++++...+-....+.... . ..-...++ -
T Consensus 177 ppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE-R~-~E-VtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e 253 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE-RP-EE-VTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVE 253 (416)
T ss_pred CCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC-ch-hH-HHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999 9999765 48999999985444 31 24 7888888874322221111110 1 11112222 2
Q ss_pred cCCeEEEEEeCccCChHH
Q 005085 71 QRMKVFIVLDDVNKDKTI 88 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~v 88 (715)
.|++++|++|++.|-...
T Consensus 254 ~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 254 HGKDVVILLDSITRLARA 271 (416)
T ss_pred cCCCEEEEEEChHHHHHH
Confidence 689999999999954443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=6.6e-05 Score=52.93 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=26.6
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCC
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTN 344 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~ 344 (715)
++|++|++++|+|+.+|..+.+|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 367888888888888877788888888888888843
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=2.1e-05 Score=76.34 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=18.3
Q ss_pred CCCCCccEEeecCCCCCcccCC-----CCCCCcceEEEEecC
Q 005085 329 KKAPKLKYVDLNHSTNLTRIPE-----PSETPNLERMNLRNC 365 (715)
Q Consensus 329 ~~l~~L~~L~L~~n~~~~~~p~-----~~~l~~L~~L~L~~n 365 (715)
-++|+|+..+||+|.+....|. ++....|.+|.+++|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3455555555555554433332 344455555555554
No 59
>PF05729 NACHT: NACHT domain
Probab=97.59 E-value=0.00054 Score=64.30 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=40.4
Q ss_pred CCCCcHHHHH-HHHHHhhcc------CCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh-cC
Q 005085 1 MGGIGKTTIG-VVFNQFSQK------FEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRL-QR 72 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~------F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L-~~ 72 (715)
.+|+||||++ .++.+.... +...+|+. .+....... ...+.+.+........ . .....+...+ +.
T Consensus 8 ~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~~l~~~~~~~~----~-~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNN-SRSLADLLFDQLPESI----A-PIEELLQELLEKN 80 (166)
T ss_pred CCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccc-cchHHHHHHHhhccch----h-hhHHHHHHHHHcC
Confidence 4899999999 888765433 34455554 443322111 1234444433332221 0 1111122222 57
Q ss_pred CeEEEEEeCcc
Q 005085 73 MKVFIVLDDVN 83 (715)
Q Consensus 73 kr~LlVLDDv~ 83 (715)
+++++|+|+++
T Consensus 81 ~~~llilDglD 91 (166)
T PF05729_consen 81 KRVLLILDGLD 91 (166)
T ss_pred CceEEEEechH
Confidence 89999999997
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=0.0001 Score=68.84 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch--hhcCCCCCCEE
Q 005085 446 PNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS--SIENLEGLKQL 523 (715)
Q Consensus 446 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~L 523 (715)
.+...++|++|.+. .+ ..|..++.|.+|.+.+|++...-|..-.-+++|..|.|.+| .+..+.+ -+..+|.|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 34555666665532 22 13445666666666666655544544444556666666666 4433322 24556666666
Q ss_pred EecCCCCCCC----------CCCcCeEEecC
Q 005085 524 KLTGCTKLGS----------LPETKNWMHPY 544 (715)
Q Consensus 524 ~Ls~n~~~~~----------lp~L~~L~l~~ 544 (715)
.+-+|+.... +|+|+.||..+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666665432 55666555544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=6.3e-05 Score=86.07 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCCCCCEEEcccccccc-cccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc--hhhcCCCCC
Q 005085 444 CLPNLEILEMSFCYSLK-RLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP--SSIENLEGL 520 (715)
Q Consensus 444 ~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L 520 (715)
.+|+|++|.+++-.+.. .+-....++|+|..||+|++++. .+ ..++.+++|+.|.+.+- .+..-. ..+.+|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCC-CCCchhhHHHHhcccCC
Confidence 46777777776633221 22233456777777777776433 22 45667777777776654 222211 245677777
Q ss_pred CEEEecCCCCCCC-------------CCCcCeEEecCccCCC
Q 005085 521 KQLKLTGCTKLGS-------------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 521 ~~L~Ls~n~~~~~-------------lp~L~~L~l~~n~L~~ 549 (715)
+.||+|.-+.... +|+|+.||.|+..+..
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777776554432 7777777777765443
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.53 E-value=0.0012 Score=71.84 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=89.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEe-cchhhhcCCcHHHHHHHHHHHHhCCC-CCCC-CC-cchHHHHHHhc--CC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMAN-VREESEKCGVLVHLRNQVLSKVLGEN-FDIG-TQ-KIPQYIRDRLQ--RM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~-v~~~~~~~~~~~~l~~~i~~~~~~~~-~~~~-~~-~~~~~l~~~L~--~k 73 (715)
++|+||||++ ++++++........|+.. .... .. ...+..+++.++.... .... +. +....+.+.++ ++
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID---RT-RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDR 138 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC---CC-HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 4799999999 999987665433333331 2221 22 5567777777776522 1111 11 45566777775 45
Q ss_pred eEEEEEeCccC-----ChHHH-----------------------------------HHhCcCcEEEcCCCCHHHHHHHHH
Q 005085 74 KVFIVLDDVNK-----DKTIL-----------------------------------ERYGTQRIYEVEGLNCNEVLRLFS 113 (715)
Q Consensus 74 r~LlVLDDv~r-----~~~v~-----------------------------------~~~~~~~~~~l~~L~~~es~~LF~ 113 (715)
..+||+|+++. ..++. ...+ ...+.+++++.++..+++.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~-~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFR-PEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCC-cceeecCCCCHHHHHHHHH
Confidence 68999999971 11111 0111 1356788999999999888
Q ss_pred hhh---cCCCC-CChhHHHHHHHHHHHhCCCcchhHHhhhcc-----cCC---ChhHHHHHHHHh
Q 005085 114 SCA---FKENH-CPEDLLKHSETAVHYAKGNPLALQVLGSSF-----YGK---SKPDWVNALNNL 166 (715)
Q Consensus 114 ~~a---f~~~~-~~~~~~~~~~~i~~~c~glPLai~~~g~~L-----~~k---~~~~w~~~l~~l 166 (715)
.++ |.... .++.++.+++.+....+..+.|+.++-.+. ++. +.+..+.+.+..
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 775 32222 222333444443333455677776654321 121 455666665544
No 63
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.52 E-value=7.1e-05 Score=74.84 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCCcHHHHH-HHHHHhh-ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC------C-cchHHHHHH-h
Q 005085 1 MGGIGKTTIG-VVFNQFS-QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT------Q-KIPQYIRDR-L 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~-~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~------~-~~~~~l~~~-L 70 (715)
++|+|||||+ .+|+.+. ++|+..+|+.++.+.. .+ +.++++++...+-....+... . ......... -
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~e-v~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~ 100 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EE-VTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVE 100 (249)
T ss_pred CCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--cc-HHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999 9999764 4799999998554431 24 888888883322111111111 0 111222222 2
Q ss_pred cCCeEEEEEeCccCChHHHHH
Q 005085 71 QRMKVFIVLDDVNKDKTILER 91 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~v~~~ 91 (715)
.++++++++|++.|-.+..+.
T Consensus 101 ~G~~vll~iDei~r~a~a~~e 121 (249)
T cd01128 101 HGKDVVILLDSITRLARAYNT 121 (249)
T ss_pred CCCCEEEEEECHHHhhhhhhh
Confidence 489999999999865554443
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00019 Score=50.63 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=20.4
Q ss_pred ccccccccccccccccchhhcCCCCCCEEEecCCCCC
Q 005085 495 LLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 495 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 531 (715)
+|++|++++| .++.+|..+++|++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666 55566655666666666666665543
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=2.8e-05 Score=67.80 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=48.9
Q ss_pred EEeccCCCCcccCcc---cCCCCCCCEEEcccccccccccccc-cCCCCccEeecCCCcCCCccchhccCCccccccccc
Q 005085 427 ELNLMCTPIEEVPLS---IECLPNLEILEMSFCYSLKRLSTSI-CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLE 502 (715)
Q Consensus 427 ~L~L~~n~l~~lp~~---~~~l~~L~~L~L~~n~~~~~lp~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 502 (715)
.++|+.+.+-.++.. +.....|...+|++|.+ ..+|..| ..++.+++|++++|. +..+|+++..++.|+.|+++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccc
Confidence 344444444433332 23334444455555542 2233322 233455556665553 34455556666666666666
Q ss_pred ccccccccchhhcCCCCCCEEEecCCCC
Q 005085 503 EASNIKELPSSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 503 ~n~~~~~lp~~l~~l~~L~~L~Ls~n~~ 530 (715)
.| .+...|..+..|.+|..|+..+|..
T Consensus 109 ~N-~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 109 FN-PLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cC-ccccchHHHHHHHhHHHhcCCCCcc
Confidence 65 4444444444455555555555543
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.29 E-value=0.00063 Score=61.15 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCCcHHHHH-HHHHHhhcc-----CCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhcCC
Q 005085 1 MGGIGKTTIG-VVFNQFSQK-----FEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQRM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~-----F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~~k 73 (715)
.+|+||||++ ++.++.... -...+|+. ..... . ...+.++++..+.......... ++.+.+.+.+...
T Consensus 12 ~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~ 86 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSSR---T-PRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRR 86 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHHS---S-HHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCCC---C-HHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhc
Confidence 3799999999 888765432 23445665 43332 3 7888999999888765442222 6667777877654
Q ss_pred e-EEEEEeCccC
Q 005085 74 K-VFIVLDDVNK 84 (715)
Q Consensus 74 r-~LlVLDDv~r 84 (715)
+ .+||+||+..
T Consensus 87 ~~~~lviDe~~~ 98 (131)
T PF13401_consen 87 RVVLLVIDEADH 98 (131)
T ss_dssp TEEEEEEETTHH
T ss_pred CCeEEEEeChHh
Confidence 4 5999999873
No 67
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.27 E-value=0.0012 Score=65.86 Aligned_cols=50 Identities=18% Similarity=0.047 Sum_probs=29.8
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
..+.+++|+.+++++++...+-....- +.-++..++|...++|.|..|..
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 459999999999999998864322111 11234569999999999988753
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0018 Score=67.02 Aligned_cols=116 Identities=21% Similarity=0.391 Sum_probs=68.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
++|+|||||| .+.......|... +++. .+ ++++.+-+ +. ++ +....|+|.+|.+
T Consensus 56 PPG~GKTTlA~liA~~~~~~f~~~---sAv~-----~g-vkdlr~i~-e~-------------a~--~~~~~gr~tiLfl 110 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNAAFEAL---SAVT-----SG-VKDLREII-EE-------------AR--KNRLLGRRTILFL 110 (436)
T ss_pred CCCCCHHHHHHHHHHhhCCceEEe---cccc-----cc-HHHHHHHH-HH-------------HH--HHHhcCCceEEEE
Confidence 5899999999 8877766665542 1121 12 45544332 11 11 1233489999999
Q ss_pred eCccCChHH-----HHHh------------------------CcCcEEEcCCCCHHHHHHHHHhhhcCCCCCC----hhH
Q 005085 80 DDVNKDKTI-----LERY------------------------GTQRIYEVEGLNCNEVLRLFSSCAFKENHCP----EDL 126 (715)
Q Consensus 80 DDv~r~~~v-----~~~~------------------------~~~~~~~l~~L~~~es~~LF~~~af~~~~~~----~~~ 126 (715)
|.|.|-.+. +..+ ....++++++|+.+|-.++..+.+-.....- ..+
T Consensus 111 DEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 111 DEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred ehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 999832111 1111 1236899999999999999888442211110 111
Q ss_pred -HHHHHHHHHHhCCCc
Q 005085 127 -LKHSETAVHYAKGNP 141 (715)
Q Consensus 127 -~~~~~~i~~~c~glP 141 (715)
++...-++..++|--
T Consensus 191 ~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 191 DEEALDYLVRLSNGDA 206 (436)
T ss_pred CHHHHHHHHHhcCchH
Confidence 345666777777743
No 69
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.20 E-value=0.0057 Score=60.32 Aligned_cols=54 Identities=9% Similarity=-0.061 Sum_probs=31.0
Q ss_pred CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCC
Q 005085 84 KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKG 139 (715)
Q Consensus 84 r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~g 139 (715)
-.+++...+...-++++++++.++-.+++.++|-...-.-+ +++++-+++.+.+
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~--~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP--EEVIEYLARRFRR 200 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTS
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHhhcC
Confidence 45566677777788999999999999998888753322111 2455556665543
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.19 E-value=0.0065 Score=65.34 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCC------ceEEEEecchhhhcCCcHHHHHHHHHHHHhC---CCCCCC-CC-cchHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE------GKYFMANVREESEKCGVLVHLRNQVLSKVLG---ENFDIG-TQ-KIPQYIRD 68 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~------~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~---~~~~~~-~~-~~~~~l~~ 68 (715)
++|+|||+++ ++++++....+ ..+|+.. ... .. ...+...++.++.. ...... +. +....+.+
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~-~~~---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC-QIL---DT-LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC-CCC---CC-HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 5899999999 99987654322 2334432 221 12 44566666666631 111111 11 34455666
Q ss_pred Hhc--CCeEEEEEeCcc----CChHHHHH-----------------------------hC-------cCcEEEcCCCCHH
Q 005085 69 RLQ--RMKVFIVLDDVN----KDKTILER-----------------------------YG-------TQRIYEVEGLNCN 106 (715)
Q Consensus 69 ~L~--~kr~LlVLDDv~----r~~~v~~~-----------------------------~~-------~~~~~~l~~L~~~ 106 (715)
.+. +++++||||+++ ...++... .. ....+.+++.+.+
T Consensus 123 ~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~ 202 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAE 202 (365)
T ss_pred HHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHH
Confidence 663 568899999998 11111110 00 0135778888988
Q ss_pred HHHHHHHhhhc---CCCCCChhHHHHHHHHHHHhCCCc
Q 005085 107 EVLRLFSSCAF---KENHCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 107 es~~LF~~~af---~~~~~~~~~~~~~~~i~~~c~glP 141 (715)
+..+++..++- ......++..+...+++....|.|
T Consensus 203 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 203 ELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred HHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 88888887752 222223333345555666677877
No 71
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.18 E-value=0.00071 Score=71.20 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=53.2
Q ss_pred CCCCcHHHHH-HHHHHhhc-cCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC---cchHH----HHHH-h
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-KFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ---KIPQY----IRDR-L 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~---~~~~~----l~~~-L 70 (715)
++|.|||||+ .+++.+.. +|+..+||..+.+.. .+ +.++++++...+-....+.... .++.. .+.. -
T Consensus 176 ~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~--~E-VtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~ 252 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP--EE-VTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 252 (415)
T ss_pred CCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC--cc-HHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4699999999 99997654 599999998554421 24 8888988865443322221111 11111 1111 2
Q ss_pred cCCeEEEEEeCccCCh
Q 005085 71 QRMKVFIVLDDVNKDK 86 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~ 86 (715)
.|++++|++|++.|-.
T Consensus 253 ~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 253 HKKDVVILLDSITRLA 268 (415)
T ss_pred cCCCeEEEEEChhHHH
Confidence 5899999999998443
No 72
>PRK08727 hypothetical protein; Validated
Probab=97.17 E-value=0.0038 Score=62.30 Aligned_cols=130 Identities=8% Similarity=0.040 Sum_probs=69.9
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-------cchHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-------KIPQYIRD 68 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-------~~~~~l~~ 68 (715)
..|+|||+|| ++++...++....+++. +.+.. . -..+++..+....- +++.. ...-.+.+
T Consensus 49 ~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~~------~-~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 49 PAGTGKTHLALALCAAAEQAGRSSAYLP-LQAAA------G-RLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHhh------h-hHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 3699999999 99988766655666776 32211 1 11122222221110 11100 11112222
Q ss_pred HhcC--CeEEEEEeCc---c--CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCC
Q 005085 69 RLQR--MKVFIVLDDV---N--KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 69 ~L~~--kr~LlVLDDv---~--r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~gl 140 (715)
.+.. +++++.=++. | ..+++...++...++++++++.++-.+++.+++.... ..+ +++..-+++.+.|-
T Consensus 121 ~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd 197 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERE 197 (233)
T ss_pred HHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCC
Confidence 3222 2333333322 1 4566776666667899999999999999998775422 222 24566777777654
Q ss_pred c
Q 005085 141 P 141 (715)
Q Consensus 141 P 141 (715)
.
T Consensus 198 ~ 198 (233)
T PRK08727 198 L 198 (233)
T ss_pred H
Confidence 4
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=6e-05 Score=74.21 Aligned_cols=128 Identities=19% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCCCCcEEeccCCCCcc---cCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCC-ccchhccCCccc
Q 005085 421 ISGNVVELNLMCTPIEE---VPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLE-SFPEILEKMELL 496 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L 496 (715)
....++.|||.+|.|+. +-.-+.++|.|+.|+|+.|.+...+-..-..+.+|++|.|.|....- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34456789999998874 33446789999999999988654432211356789999888764432 223345667777
Q ss_pred cccccccccccc----------ccch---hhcCCCCCCEEEecCCCCCCCCCCcCeEEecCccCCC
Q 005085 497 EEINLEEASNIK----------ELPS---SIENLEGLKQLKLTGCTKLGSLPETKNWMHPYCKHYP 549 (715)
Q Consensus 497 ~~L~L~~n~~~~----------~lp~---~l~~l~~L~~L~Ls~n~~~~~lp~L~~L~l~~n~L~~ 549 (715)
+.|+++.| ... .... .+..++++..+.++-|++...+|++..+-+..|+|++
T Consensus 149 telHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 149 TELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT 213 (418)
T ss_pred hhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc
Confidence 78877777 222 1111 1233444555555566666779999999999998876
No 74
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.15 E-value=0.00045 Score=71.83 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=97.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
.|||||||++ ++-. ++..|....|+.......+ ++ .+--.......-.. .........+..++.++|.++|+
T Consensus 22 ~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD-~~---~v~~~~ag~~gl~~--~~g~~~~~~~~~~~~~rr~llvl 94 (414)
T COG3903 22 AGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD-PA---LVFPTLAGALGLHV--QPGDSAVDTLVRRIGDRRALLVL 94 (414)
T ss_pred cCccceehhhhhhHh-HhhhcccceeeeeccccCc-hh---HhHHHHHhhccccc--ccchHHHHHHHHHHhhhhHHHHh
Confidence 4999999999 8888 8899999888874443322 22 12222222222221 11113455778888999999999
Q ss_pred eCcc------------------CChHHHH-----HhCcCcEEEcCCCCHH-HHHHHHHhhhcC---CCCCChhHHHHHHH
Q 005085 80 DDVN------------------KDKTILE-----RYGTQRIYEVEGLNCN-EVLRLFSSCAFK---ENHCPEDLLKHSET 132 (715)
Q Consensus 80 DDv~------------------r~~~v~~-----~~~~~~~~~l~~L~~~-es~~LF~~~af~---~~~~~~~~~~~~~~ 132 (715)
||.. +....+. .+..+..+.++.|+.- ++-++|...+-. .-.-...-...+.+
T Consensus 95 dncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~ 174 (414)
T COG3903 95 DNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAE 174 (414)
T ss_pred cCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHH
Confidence 9986 1111111 1123567788888776 688898877632 11111222456889
Q ss_pred HHHHhCCCcchhHHhhhcccCCChhHH
Q 005085 133 AVHYAKGNPLALQVLGSSFYGKSKPDW 159 (715)
Q Consensus 133 i~~~c~glPLai~~~g~~L~~k~~~~w 159 (715)
|.++.+|.|++|...++..+.....+-
T Consensus 175 icr~ldg~~laielaaarv~sl~~~~i 201 (414)
T COG3903 175 ICRRLDGIPLAIELAAARVRSLSPDEI 201 (414)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCHHHH
Confidence 999999999999999998887655443
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=2.7e-05 Score=67.97 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=39.5
Q ss_pred EEecCCCccccccc---CCCCCCccEEeecCCCCCcccCC-C-CCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 314 TQLSFKKVEQIWEG---QKKAPKLKYVDLNHSTNLTRIPE-P-SETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 314 L~L~~~~l~~lp~~---~~~l~~L~~L~L~~n~~~~~~p~-~-~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
++|+.+.+-.+++. +....+|+..+|++|.+ +.+|. | ..++.+++|+|++| .+..+|..+..++.|+.|+++.
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccccc
Confidence 34444444433332 33445555556666633 33343 3 34456666666664 4556666666666666666666
Q ss_pred c
Q 005085 389 C 389 (715)
Q Consensus 389 ~ 389 (715)
|
T Consensus 110 N 110 (177)
T KOG4579|consen 110 N 110 (177)
T ss_pred C
Confidence 5
No 76
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00012 Score=83.88 Aligned_cols=60 Identities=27% Similarity=0.202 Sum_probs=34.2
Q ss_pred CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccc-cccccccCCCCccEeecCCCc
Q 005085 421 ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLK-RLSTSICKLKYLSSLDLSYCI 481 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~L~~n~ 481 (715)
.++||..||+++++++.+ .++++|++|+.|.+.+=.+.. .--..+.+|++|+.||+|...
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 344556667777666666 456677777777665533221 111234566666666666543
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.06 E-value=0.0078 Score=59.82 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=20.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+|||||| +++++........+++.
T Consensus 46 ~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4799999999 98887665555555665
No 78
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00024 Score=69.31 Aligned_cols=98 Identities=30% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCCCCEEEcccccccccccccccCCCCccEeecCCC--cCCCccchhccCCcccccccccccccccccc--hhhcCCCCC
Q 005085 445 LPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYC--INLESFPEILEKMELLEEINLEEASNIKELP--SSIENLEGL 520 (715)
Q Consensus 445 l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L 520 (715)
+..|+.|++.++.++. + ..+-.|++|++|.++.| +..+.++.....+++|++|++++| .+..+. ..+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 3445555555443222 1 12445667777777777 555555555556677777777777 444321 125667778
Q ss_pred CEEEecCCCCCCC----------CCCcCeEEecCc
Q 005085 521 KQLKLTGCTKLGS----------LPETKNWMHPYC 545 (715)
Q Consensus 521 ~~L~Ls~n~~~~~----------lp~L~~L~l~~n 545 (715)
..|++.+|..+.. +|+|+.||-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8888888876654 777777765443
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0009 Score=62.65 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=76.8
Q ss_pred CcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCcc-chhccCCcccccccccc
Q 005085 425 VVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESF-PEILEKMELLEEINLEE 503 (715)
Q Consensus 425 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~ 503 (715)
...+||++|.+..++. +.++++|.+|.+.+|.+...-|.--.-+++|+.|.|.+|++...- -.-+..++.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3578899998887764 788999999999999988777765566788999999998654311 12366788999999988
Q ss_pred cccccccch----hhcCCCCCCEEEecCCC
Q 005085 504 ASNIKELPS----SIENLEGLKQLKLTGCT 529 (715)
Q Consensus 504 n~~~~~lp~----~l~~l~~L~~L~Ls~n~ 529 (715)
| ..+.-.. .+..+|+|+.||.+.-.
T Consensus 123 N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 N-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred C-chhcccCceeEEEEecCcceEeehhhhh
Confidence 8 3333221 36788999999987643
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.99 E-value=0.0036 Score=68.31 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=35.2
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHHHhCCCcchhHHh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCP-EDLLKHSETAVHYAKGNPLALQVL 147 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~-~~~~~~~~~i~~~c~glPLai~~~ 147 (715)
.++.+++++.++.++++.+.+-...... .--++..+.+++.|+|.+..+..+
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 5788999999999999987653211100 111456778899999988665443
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.92 E-value=0.0002 Score=69.69 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=102.1
Q ss_pred cccccEEEecCCCccc-----ccccCCCCCCccEEeecCCCCCcc----c--------CCCCCCCcceEEEEecCCCCcc
Q 005085 308 QQESYRTQLSFKKVEQ-----IWEGQKKAPKLKYVDLNHSTNLTR----I--------PEPSETPNLERMNLRNCTGLAH 370 (715)
Q Consensus 308 ~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~n~~~~~----~--------p~~~~l~~L~~L~L~~n~~l~~ 370 (715)
+..++.++||+|-|.. +...+.+-.+|+..+++.- +++. + +.+-++|+|+..+||+|.....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4678888888887762 3445667778888887764 3322 1 2246778888888888866655
Q ss_pred cCc----hhhcccccceEeccCcccccccCcccC-CCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc----
Q 005085 371 IPS----YVQNFNKLGNMIMAGCESLRCFPQNIH-FISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS---- 441 (715)
Q Consensus 371 ~p~----~~~~l~~L~~L~L~~~~~~~~lp~~~~-~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~---- 441 (715)
.|. .+++-+.|.+|.|++|..-..--.-++ .+..| ..+.+.. .-+.|++.....|++..-|..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l----a~nKKaa----~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL----AYNKKAA----DKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH----HHHhhhc----cCCCceEEEeccchhccCcHHHHHH
Confidence 553 355567788888877742211111111 00011 0111111 122456666677766655432
Q ss_pred -cCCCCCCCEEEccccccccc-----ccccccCCCCccEeecCCCcCCCc----cchhccCCccccccccccc
Q 005085 442 -IECLPNLEILEMSFCYSLKR-----LSTSICKLKYLSSLDLSYCINLES----FPEILEKMELLEEINLEEA 504 (715)
Q Consensus 442 -~~~l~~L~~L~L~~n~~~~~-----lp~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n 504 (715)
+..-.+|+.+.+..|.+... +--.+..+.+|+.|||..|.++.. +...+...+.|+.|.+..|
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 22235677777776654321 111234566777777777654421 1223444455666666666
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.87 E-value=0.0098 Score=65.26 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=75.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCc--eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEG--KYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIV 78 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~--~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 78 (715)
.|+|||+|+ ++.+.+...... .+++. ..++..++...+.... .....+++.++ +.-+||
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~~~-~~dvLi 211 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNEIC-QNDVLI 211 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHHhc-cCCEEE
Confidence 699999999 999976543322 23343 2333344433332210 11233344433 234666
Q ss_pred EeCcc---------------------------------------CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCC
Q 005085 79 LDDVN---------------------------------------KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKE 119 (715)
Q Consensus 79 LDDv~---------------------------------------r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~ 119 (715)
+||+. -++++...+..+-++.+++++.++-.+++.+++-..
T Consensus 212 IDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 212 IDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred EeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 77774 234455555566788999999999999998877432
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 120 NHCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 120 ~~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
.....=-+++..-|++.+.|.|-.+..
T Consensus 292 gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 292 NIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred CCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 110011146788889999998855543
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=96.81 E-value=0.015 Score=58.02 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=39.4
Q ss_pred CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcch
Q 005085 84 KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 84 r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+++...++...++++++++.++-.+...+++......-+ +++..-+++++.|-.-+
T Consensus 147 ~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT--DEVGHFILTRGTRSMSA 204 (234)
T ss_pred cCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 45667777777788999999999999998866644321111 36677777777765433
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.016 Score=57.92 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHH--HhCCCCCCCCC--------cchHHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSK--VLGENFDIGTQ--------KIPQYIRDR 69 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~--~~~~~~~~~~~--------~~~~~l~~~ 69 (715)
+.|+|||+|| ++++.+...-....++. +..... . ..++.+.+... +.-+ ++... .+...+...
T Consensus 53 p~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~~--~-~~~~~~~~~~~dlliiD--di~~~~~~~~~~~~lf~l~n~~ 126 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQRGRAVGYVP-LDKRAW--F-VPEVLEGMEQLSLVCID--NIECIAGDELWEMAIFDLYNRI 126 (235)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHhh--h-hHHHHHHhhhCCEEEEe--ChhhhcCCHHHHHHHHHHHHHH
Confidence 4799999999 89987665544455665 322110 0 22222222110 0000 11100 112222333
Q ss_pred hc-CCeEEEEEeCcc------CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 70 LQ-RMKVFIVLDDVN------KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 70 L~-~kr~LlVLDDv~------r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
.. ++..+|+-=+.. ..+++...+....++++++++.++-.+.+.+++-... ..+ +++..-+++.+.|..
T Consensus 127 ~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 127 LESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREM 203 (235)
T ss_pred HHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCH
Confidence 33 333444443332 4577888887788999999999999998877664322 222 356777777777654
Q ss_pred ch
Q 005085 142 LA 143 (715)
Q Consensus 142 La 143 (715)
-+
T Consensus 204 r~ 205 (235)
T PRK08084 204 RT 205 (235)
T ss_pred HH
Confidence 33
No 85
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.063 Score=58.92 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=19.6
Q ss_pred CCCCcHHHHH-HHHHHhhccC-Cc-eEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF-EG-KYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F-~~-~~wv~ 27 (715)
..|+|||+|| ++.+.+.+.. .. .+++.
T Consensus 138 ~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3799999999 9999876654 33 34444
No 86
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.64 E-value=0.01 Score=62.08 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=77.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC--cchHHHHHHhcCC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ--KIPQYIRDRLQRM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~--~~~~~l~~~L~~k 73 (715)
++|+|||||| ++.++....+. .+. ...... ...+.. .+..+....- ++... ...+.+...+.+.
T Consensus 38 p~G~GKT~la~~ia~~~~~~~~---~~~-~~~~~~----~~~l~~-~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~ 108 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVNLK---ITS-GPALEK----PGDLAA-ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDF 108 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE---Eec-cchhcC----chhHHH-HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhh
Confidence 5899999999 88887654321 111 111001 112222 1222222110 11111 3345567777788
Q ss_pred eEEEEEeCcc-------------------CCh----HHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHH
Q 005085 74 KVFIVLDDVN-------------------KDK----TILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHS 130 (715)
Q Consensus 74 r~LlVLDDv~-------------------r~~----~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~ 130 (715)
+..+|+|+.. +.. .+...+ ...+++++++.+|..+++.+.+......-+ .+..
T Consensus 109 ~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~--~~~~~l~~l~~~e~~~il~~~~~~~~~~~~--~~al 184 (305)
T TIGR00635 109 RLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRF--GIILRLEFYTVEELAEIVSRSAGLLNVEIE--PEAA 184 (305)
T ss_pred heeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhc--ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC--HHHH
Confidence 8888888753 111 122222 357899999999999999988753221111 3567
Q ss_pred HHHHHHhCCCcchhHHhhh
Q 005085 131 ETAVHYAKGNPLALQVLGS 149 (715)
Q Consensus 131 ~~i~~~c~glPLai~~~g~ 149 (715)
..|++.|+|.|-.+..++.
T Consensus 185 ~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 185 LEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHhCCCcchHHHHHH
Confidence 8899999999966554443
No 87
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0015 Score=63.91 Aligned_cols=106 Identities=22% Similarity=0.132 Sum_probs=67.7
Q ss_pred CCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccc--cccccccccccCCCCccEeecCCCcCCC--ccchhccCCcc
Q 005085 420 RISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFC--YSLKRLSTSICKLKYLSSLDLSYCINLE--SFPEILEKMEL 495 (715)
Q Consensus 420 ~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n--~~~~~lp~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~ 495 (715)
....+++.|++.+..++++.. +..|++|++|.++.| ...+.++.....+|+|++|++++|.+.- +++ .+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 334445555555555554432 456889999999988 5556666556677999999999986542 222 2456777
Q ss_pred cccccccccccccccch----hhcCCCCCCEEEecCC
Q 005085 496 LEEINLEEASNIKELPS----SIENLEGLKQLKLTGC 528 (715)
Q Consensus 496 L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~Ls~n 528 (715)
|..|++.+|.... +-. .+.-+++|++|+=...
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 8888888884332 321 2455788888775544
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.62 E-value=0.026 Score=61.81 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=21.1
Q ss_pred HHHHHhCcCcEEEcCCCCHHHHHHHHHhhhc
Q 005085 87 TILERYGTQRIYEVEGLNCNEVLRLFSSCAF 117 (715)
Q Consensus 87 ~v~~~~~~~~~~~l~~L~~~es~~LF~~~af 117 (715)
++...+....++++++++.++-.+++.+++-
T Consensus 255 rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 255 RLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred HHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 3344444456788888888888888777663
No 89
>PRK09087 hypothetical protein; Validated
Probab=96.60 E-value=0.028 Score=55.69 Aligned_cols=59 Identities=10% Similarity=-0.038 Sum_probs=42.7
Q ss_pred CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchhH
Q 005085 84 KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLALQ 145 (715)
Q Consensus 84 r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai~ 145 (715)
..+++...+....++++++++.++-.+++.+++-... ..+ +++..-|++.+.|..-++.
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHH
Confidence 3566777777788999999999999999998874322 222 3567777777777665554
No 90
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.57 E-value=0.012 Score=62.08 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=78.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC--cchHHHHHHhcCC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ--KIPQYIRDRLQRM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~--~~~~~l~~~L~~k 73 (715)
++|+|||||| ++.+.....+. ++. .. .... ..+ ...++..+....- +++.. ...+.+...+.+.
T Consensus 59 ppG~GKT~la~~ia~~l~~~~~---~~~-~~-~~~~---~~~-l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~ 129 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVNIR---ITS-GP-ALEK---PGD-LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDF 129 (328)
T ss_pred CCCccHHHHHHHHHHHhCCCeE---EEe-cc-cccC---hHH-HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhc
Confidence 5899999999 88887654321 111 11 1111 111 1223333322110 11111 2345566777888
Q ss_pred eEEEEEeCcc-------------------C----ChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHH
Q 005085 74 KVFIVLDDVN-------------------K----DKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHS 130 (715)
Q Consensus 74 r~LlVLDDv~-------------------r----~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~ 130 (715)
+..+|+|+.. + ...+...+ ...+++++++.++..+++.+.+-.....-+ ++..
T Consensus 130 ~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf--~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~ 205 (328)
T PRK00080 130 RLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF--GIVQRLEFYTVEELEKIVKRSARILGVEID--EEGA 205 (328)
T ss_pred ceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc--CeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHH
Confidence 8888888743 1 11122222 356899999999999999988754322111 3568
Q ss_pred HHHHHHhCCCcchhHHhhh
Q 005085 131 ETAVHYAKGNPLALQVLGS 149 (715)
Q Consensus 131 ~~i~~~c~glPLai~~~g~ 149 (715)
..|++.|+|.|-.+..+..
T Consensus 206 ~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 206 LEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHcCCCchHHHHHHH
Confidence 8999999999965544443
No 91
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.54 E-value=0.026 Score=64.16 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=119.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC--------------cchHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ--------------KIPQY 65 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~--------------~~~~~ 65 (715)
++|-|||||+ +... ....=..+.|.+ ..+.- .+ .......++..++.-.++..+. .....
T Consensus 45 PAGfGKttl~aq~~~-~~~~~~~v~Wls-lde~d--nd-p~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~ 119 (894)
T COG2909 45 PAGFGKTTLLAQWRE-LAADGAAVAWLS-LDESD--ND-PARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSS 119 (894)
T ss_pred CCCCcHHHHHHHHHH-hcCcccceeEee-cCCcc--CC-HHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHH
Confidence 6899999999 7766 444456788998 54432 23 5566666666665322211110 23333
Q ss_pred HHHHhc--CCeEEEEEeCcc--CChHHHHHh------Cc-----------------------CcEEEcC----CCCHHHH
Q 005085 66 IRDRLQ--RMKVFIVLDDVN--KDKTILERY------GT-----------------------QRIYEVE----GLNCNEV 108 (715)
Q Consensus 66 l~~~L~--~kr~LlVLDDv~--r~~~v~~~~------~~-----------------------~~~~~l~----~L~~~es 108 (715)
+...|. .+...+||||-. ++..+-..+ .. +...++. .++.+|+
T Consensus 120 L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~ 199 (894)
T COG2909 120 LLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEA 199 (894)
T ss_pred HHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHH
Confidence 444443 367899999987 122111111 00 1112221 4789999
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhcccCC-ChhHHHH--------HHHHhhccCCCCCc-CCH
Q 005085 109 LRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSSFYGK-SKPDWVN--------ALNNLKRISGSDIY-DDR 178 (715)
Q Consensus 109 ~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~k-~~~~w~~--------~l~~l~~~~~~~i~-~~~ 178 (715)
-++|.......-+ +.-...+.+...|=+-|+..++=.+++. +.+.--. +.+.|....-.... +..
T Consensus 200 ~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~ 274 (894)
T COG2909 200 AAFLNDRGSLPLD-----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELR 274 (894)
T ss_pred HHHHHHcCCCCCC-----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHH
Confidence 9999876522211 1236777888888888888777776622 2221111 11111110000000 012
Q ss_pred HHHHHHHhhCCC------------CHHHhHHHHhcccceEEe----CCeEeecHHHHHHHHHHHhhh
Q 005085 179 EHVMWILSDDYC------------SVQYAMNVLVNKSLIKIS----YNKLQMHDLLQEMGREIVCQE 229 (715)
Q Consensus 179 ~~l~~il~~~~~------------~~~~~l~~L~~~~ll~~~----~~~~~mhdli~~l~~~i~~~~ 229 (715)
+.+++.=..+++ ++...+++|.++.++-.. +.-++.|.+..|+-+.-...+
T Consensus 275 ~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 275 DFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 333333333333 445568899999988755 567999999999877655554
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.42 E-value=0.04 Score=60.08 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.9
Q ss_pred CCCCcHHHHH-HHHHHhhccC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF 20 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F 20 (715)
..|+|||+|| ++++.+.++.
T Consensus 144 ~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 144 GVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 3699999999 9999877654
No 93
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.35 E-value=0.005 Score=62.02 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-----CCCCC--------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-----DIGTQ--------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~--------~~~~~l~ 67 (715)
.|+|||||| .++++++.+|+..+++..+.+..+ + +.++.+++...-..... ..++. ...-.+.
T Consensus 78 ~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~--E-v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~A 154 (274)
T cd01133 78 AGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR--E-GNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMA 154 (274)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH--H-HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999 999999988888887776655532 3 55666666543111100 11110 1123345
Q ss_pred HHh---cCCeEEEEEeCccCChHHHH
Q 005085 68 DRL---QRMKVFIVLDDVNKDKTILE 90 (715)
Q Consensus 68 ~~L---~~kr~LlVLDDv~r~~~v~~ 90 (715)
+++ +++.+|+|+||+.|--+..+
T Consensus 155 Eyfr~~~g~~Vl~~~Dsltr~a~A~r 180 (274)
T cd01133 155 EYFRDEEGQDVLLFIDNIFRFTQAGS 180 (274)
T ss_pred HHHHHhcCCeEEEEEeChhHHHHHHH
Confidence 555 38999999999986544443
No 94
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.34 E-value=0.036 Score=61.24 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE 21 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~ 21 (715)
..|+|||+|| ++.+.+.+++.
T Consensus 156 ~~G~GKThL~~ai~~~~~~~~~ 177 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYILEKNP 177 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC
Confidence 3799999999 99998877653
No 95
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.19 E-value=0.00088 Score=74.89 Aligned_cols=62 Identities=26% Similarity=0.435 Sum_probs=37.2
Q ss_pred CCCCccEEeecCCCCCccc---CCCCCCCcceEEEEecC-CCCcccC----chhhcccccceEeccCccc
Q 005085 330 KAPKLKYVDLNHSTNLTRI---PEPSETPNLERMNLRNC-TGLAHIP----SYVQNFNKLGNMIMAGCES 391 (715)
Q Consensus 330 ~l~~L~~L~L~~n~~~~~~---p~~~~l~~L~~L~L~~n-~~l~~~p----~~~~~l~~L~~L~L~~~~~ 391 (715)
.+++|+.|.+..+...... +....+++|+.|++++| ......+ .....+++|+.|+++++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 3677888888777555442 23567788888888763 2222222 2334456777777777653
No 96
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.00067 Score=75.84 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=47.3
Q ss_pred ccccEEEecCC-Cccc--ccccCCCCCCccEEeecCC-CCCcccC-----CCCCCCcceEEEEecCCCCcccC-chhh-c
Q 005085 309 QESYRTQLSFK-KVEQ--IWEGQKKAPKLKYVDLNHS-TNLTRIP-----EPSETPNLERMNLRNCTGLAHIP-SYVQ-N 377 (715)
Q Consensus 309 ~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~L~~n-~~~~~~p-----~~~~l~~L~~L~L~~n~~l~~~p-~~~~-~ 377 (715)
+.|+.|.+... .+.. +-.....+++|+.|+++++ ......+ ....+++|+.|++++|......- ..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 56677766654 2332 2233566788888888763 2222222 13456888888888876433322 2222 2
Q ss_pred ccccceEeccCccc
Q 005085 378 FNKLGNMIMAGCES 391 (715)
Q Consensus 378 l~~L~~L~L~~~~~ 391 (715)
+++|+.|.+.+|..
T Consensus 268 c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN 281 (482)
T ss_pred CCCcceEccCCCCc
Confidence 66777777666653
No 97
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.25 Score=52.70 Aligned_cols=184 Identities=17% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhC--CC-----CCCCCC----cchHHH---
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLG--EN-----FDIGTQ----KIPQYI--- 66 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~--~~-----~~~~~~----~~~~~l--- 66 (715)
.|.|||.|+ ++.+.+.++.+....+...++.|...- +..+...=..+... .. +|++.. ..++.+
T Consensus 122 ~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~ 200 (408)
T COG0593 122 VGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHT 200 (408)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHhhhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHH
Confidence 599999999 999998877775544443444441111 22222200000000 00 011000 111221
Q ss_pred HHHh-cCCeEEEEEeCcc------CChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChh-HHHHHHHHHHHh
Q 005085 67 RDRL-QRMKVFIVLDDVN------KDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPED-LLKHSETAVHYA 137 (715)
Q Consensus 67 ~~~L-~~kr~LlVLDDv~------r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~-~~~~~~~i~~~c 137 (715)
-+.| ...+.+|+--|-+ -..++...++..-++++++++.+.......+++-... ..+++ .+-++..+-+-.
T Consensus 201 FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 201 FNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred HHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccH
Confidence 1122 2333555555544 4466777777778999999999999999988774432 33322 223333333322
Q ss_pred CCCcchhHHhhh--cccCC--ChhHHHHHHHHhhccCCCCCcCCHHHHHHHHhhCC
Q 005085 138 KGNPLALQVLGS--SFYGK--SKPDWVNALNNLKRISGSDIYDDREHVMWILSDDY 189 (715)
Q Consensus 138 ~glPLai~~~g~--~L~~k--~~~~w~~~l~~l~~~~~~~i~~~~~~l~~il~~~~ 189 (715)
.-+.=|+..+.. ...++ +.+.-+.++..+..... . -..+.+++.-...|
T Consensus 281 ReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~--~-itie~I~~~Va~~y 333 (408)
T COG0593 281 RELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE--K-ITIEDIQKIVAEYY 333 (408)
T ss_pred HHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc--c-CCHHHHHHHHHHHh
Confidence 233334332222 11222 55666666666555433 2 33444554444333
No 98
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.00098 Score=65.29 Aligned_cols=60 Identities=28% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch--hhcCCCCCCEEEecCCCC
Q 005085 468 KLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 468 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~L~Ls~n~~ 530 (715)
.|+.|+.|.|+-|.+.+.-| +..+++|++|+|..| .+.++.. -+.++++|+.|-|..|+-
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCc
Confidence 44445555555444333222 344555555555555 3333322 234555555555555543
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.82 E-value=0.13 Score=57.79 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=32.9
Q ss_pred ChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 005085 85 DKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~gl 140 (715)
..++...+...-+++++..+.+.-.+++.+++-.....-+ +++.+-|++.+.+.
T Consensus 428 ~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~--~eVi~yLa~r~~rn 481 (617)
T PRK14086 428 EDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAP--PEVLEFIASRISRN 481 (617)
T ss_pred cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhccCC
Confidence 3445555566678888888888888888877643221111 24555555555543
No 100
>PHA00729 NTP-binding motif containing protein
Probab=95.66 E-value=0.083 Score=51.68 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=30.0
Q ss_pred EEEEeCc--cCCh------------HHHHHhC-cCcEEEcCCCCHHHHHHHHHhhhcC
Q 005085 76 FIVLDDV--NKDK------------TILERYG-TQRIYEVEGLNCNEVLRLFSSCAFK 118 (715)
Q Consensus 76 LlVLDDv--~r~~------------~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~ 118 (715)
+||+||+ |-.+ .+....- ....+.+..+++++..+.+..+...
T Consensus 85 lLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~ 142 (226)
T PHA00729 85 LIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWY 142 (226)
T ss_pred EEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCc
Confidence 7899994 3222 1333332 3467899999999999999987764
No 101
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.2 Score=53.39 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=50.2
Q ss_pred CCCcHHHHH-HHHHHhhccCCc--eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-CCCCCcchHHHHHHhc--CCeE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEG--KYFMANVREESEKCGVLVHLRNQVLSKVLGENF-DIGTQKIPQYIRDRLQ--RMKV 75 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~--~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~~~l~~~L~--~kr~ 75 (715)
.|.|||+.+ .|.+++...... .+.|.+... .. .-++..+|+.++..... .....+....+.+.+. ++.+
T Consensus 51 ~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~----~t-~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~ 125 (366)
T COG1474 51 TGTGKTATVKFVMEELEESSANVEVVYINCLEL----RT-PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTV 125 (366)
T ss_pred CCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC----CC-HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeE
Confidence 699999999 999987655333 344432211 12 56677777777753332 1222266677777774 5899
Q ss_pred EEEEeCcc
Q 005085 76 FIVLDDVN 83 (715)
Q Consensus 76 LlVLDDv~ 83 (715)
.||||++.
T Consensus 126 IvvLDEid 133 (366)
T COG1474 126 IVILDEVD 133 (366)
T ss_pred EEEEcchh
Confidence 99999998
No 102
>PRK08116 hypothetical protein; Validated
Probab=95.60 E-value=0.045 Score=55.78 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEEe
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVLD 80 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD 80 (715)
.|+|||+|| ++++.+.++-...+++. ..++...+........ ......+.+.+.+-. |||||
T Consensus 123 ~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~d-lLviD 185 (268)
T PRK08116 123 VGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVNAD-LLILD 185 (268)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcCCC-EEEEe
Confidence 699999999 99998776644455554 3334444443332211 022334455555444 88999
Q ss_pred Ccc
Q 005085 81 DVN 83 (715)
Q Consensus 81 Dv~ 83 (715)
|+.
T Consensus 186 Dlg 188 (268)
T PRK08116 186 DLG 188 (268)
T ss_pred ccc
Confidence 995
No 103
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.60 E-value=0.07 Score=61.86 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=28.4
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcC------CCCCChhHHHHHHHHHHHhCCC
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFK------ENHCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~------~~~~~~~~~~~~~~i~~~c~gl 140 (715)
.++.+++|+.++...++.+.+-. .... .=-++....+++.+.|.
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v-~I~deaL~~La~~s~GD 210 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKV-DLEPEAEKHLVDVANGD 210 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCccc-CCCHHHHHHHHHhCCCC
Confidence 47889999999999988875531 1110 00134567777778775
No 104
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.58 E-value=0.041 Score=54.92 Aligned_cols=64 Identities=11% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEEe
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVLD 80 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD 80 (715)
+|+|||+|| ++.+.+...-...+++. +.++...+-...... + .....+.+.+. +.=+||+|
T Consensus 108 ~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~~--~----~~~~~~l~~l~-~~dlLvID 169 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSNS--E----TSEEQLLNDLS-NVDLLVID 169 (244)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhhc--c----ccHHHHHHHhc-cCCEEEEe
Confidence 799999999 99998766545555554 333444333322111 0 12234445565 34578889
Q ss_pred Ccc
Q 005085 81 DVN 83 (715)
Q Consensus 81 Dv~ 83 (715)
|+.
T Consensus 170 Dig 172 (244)
T PRK07952 170 EIG 172 (244)
T ss_pred CCC
Confidence 996
No 105
>PRK12377 putative replication protein; Provisional
Probab=95.54 E-value=0.046 Score=54.72 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=38.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEEe
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVLD 80 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD 80 (715)
.|+|||+|| ++.+.+......++++. +.++...+-...... .....+.+.+ .+-=|||||
T Consensus 110 ~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~-------~~~~~~l~~l-~~~dLLiID 170 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG-------QSGEKFLQEL-CKVDLLVLD 170 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc-------chHHHHHHHh-cCCCEEEEc
Confidence 699999999 99998777666667776 333444443332111 1112233333 356688999
Q ss_pred Ccc
Q 005085 81 DVN 83 (715)
Q Consensus 81 Dv~ 83 (715)
|+.
T Consensus 171 Dlg 173 (248)
T PRK12377 171 EIG 173 (248)
T ss_pred CCC
Confidence 995
No 106
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.48 E-value=0.044 Score=53.13 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=30.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
-+.+++..+.+|-.++..+.+-.-...- -++.+.+|++++.|-|--+
T Consensus 172 i~~~l~~Y~~~el~~Iv~r~a~~l~i~i--~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 172 IVLRLEFYSEEELAKIVKRSARILNIEI--DEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEE----THHHHHHHHHHCCHCTT-EE---HHHHHHHHHCTTTSHHHH
T ss_pred eecchhcCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHhcCCChHHH
Confidence 4568999999999999988774322211 2467899999999999543
No 107
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.0018 Score=63.59 Aligned_cols=96 Identities=24% Similarity=0.259 Sum_probs=66.0
Q ss_pred CcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc--hhccCCccccccccc
Q 005085 425 VVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP--EILEKMELLEEINLE 502 (715)
Q Consensus 425 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~ 502 (715)
.+.|+..++.+..|.- ...++.|+.|.|+-|.+...- .+..+++|++|+|..|.+. .+. ..+.++++|+.|.|.
T Consensus 21 vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhc
Confidence 4567777777776532 467888888888888755433 3678888899988887543 333 246788899999998
Q ss_pred ccccccccch-----hhcCCCCCCEEE
Q 005085 503 EASNIKELPS-----SIENLEGLKQLK 524 (715)
Q Consensus 503 ~n~~~~~lp~-----~l~~l~~L~~L~ 524 (715)
.|+-.+.-+. .+..||+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 8866555443 245667776665
No 108
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.34 E-value=0.065 Score=53.02 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEe
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMAN 28 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~ 28 (715)
..|.|||||+ .+.......|+..++++.
T Consensus 21 ~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 21 KSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred CCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 3699999999 888888889977776654
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.27 E-value=0.22 Score=49.45 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=33.6
Q ss_pred hHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcC-CCCCChhHHHHHHHHHHHhCCCcchhHHhhh
Q 005085 86 KTILERYGTQRIYEVEGLNCNEVLRLFSSCAFK-ENHCPEDLLKHSETAVHYAKGNPLALQVLGS 149 (715)
Q Consensus 86 ~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~-~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 149 (715)
.++...+.....+++++|++++-..++.+.+-. +...+ ++....+++.+.|.+..+..+-.
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~ 201 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 334444444467888888887655555543211 11111 24566666677777766654443
No 110
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.16 E-value=0.049 Score=49.30 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=19.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++++...+.-...+++.
T Consensus 27 ~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 27 PPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 4799999999 99987654333444444
No 111
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.88 E-value=0.08 Score=55.70 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCcHHHHH-HHHHHhhccC-CceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC------cchHHHHHHh--c
Q 005085 2 GGIGKTTIG-VVFNQFSQKF-EGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ------KIPQYIRDRL--Q 71 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F-~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~------~~~~~l~~~L--~ 71 (715)
.|+|||||+ .+.+.+..+- +..+++..+.+.. .+ +.++.+.+...+.....+.... .....+.+++ +
T Consensus 142 pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~--~E-V~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~ 218 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP--EE-VTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQ 218 (380)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC--CC-HHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 699999999 9988776544 4433333354443 24 6778887777554432111111 1122233333 5
Q ss_pred CCeEEEEEeCccCC
Q 005085 72 RMKVFIVLDDVNKD 85 (715)
Q Consensus 72 ~kr~LlVLDDv~r~ 85 (715)
+++++||+|++.|-
T Consensus 219 GkdVVLvlDsltr~ 232 (380)
T PRK12608 219 GKDVVILLDSLTRL 232 (380)
T ss_pred CCCEEEEEeCcHHH
Confidence 89999999999844
No 112
>PLN03025 replication factor C subunit; Provisional
Probab=94.86 E-value=0.15 Score=53.67 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=28.6
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
..+++++++.++..+.+.+.+-... ..+ .+....+++.++|-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 4688888998888887776653322 122 245677888888765
No 113
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.78 E-value=0.29 Score=54.38 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=30.8
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glP 141 (715)
..+++++++.++..+.+.+.+-......+ .+....|++.++|.+
T Consensus 180 ~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 180 QRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSA 223 (507)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 57889999999999988877743221111 244567888888866
No 114
>PF13173 AAA_14: AAA domain
Probab=94.76 E-value=0.07 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+|||||+ +++.+.. .-+..+++.
T Consensus 10 ~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 3599999999 8887654 334455554
No 115
>PRK08181 transposase; Validated
Probab=94.69 E-value=0.11 Score=52.80 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=37.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
+.|+|||.|| ++.+.+..+...+.|+. ..++..++...... ....++.+.+. +-=|||+
T Consensus 114 p~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~~--------~~~~~~l~~l~-~~dLLII 173 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARRE--------LQLESAIAKLD-KFDLLIL 173 (269)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHhC--------CcHHHHHHHHh-cCCEEEE
Confidence 4799999999 99887666555556665 34444444332111 11222233333 3348999
Q ss_pred eCcc
Q 005085 80 DDVN 83 (715)
Q Consensus 80 DDv~ 83 (715)
||+.
T Consensus 174 DDlg 177 (269)
T PRK08181 174 DDLA 177 (269)
T ss_pred eccc
Confidence 9986
No 116
>PF14516 AAA_35: AAA-like domain
Probab=94.60 E-value=0.14 Score=53.92 Aligned_cols=145 Identities=14% Similarity=0.266 Sum_probs=86.0
Q ss_pred CCcHHHHH-HHHHHhhccCCceEEEEecchhhh--cCC---cHHHHHHHHHHHHhCCCC--C-----CCCC-cchHHHHH
Q 005085 3 GIGKTTIG-VVFNQFSQKFEGKYFMANVREESE--KCG---VLVHLRNQVLSKVLGENF--D-----IGTQ-KIPQYIRD 68 (715)
Q Consensus 3 GiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~--~~~---~~~~l~~~i~~~~~~~~~--~-----~~~~-~~~~~l~~ 68 (715)
.+|||||. ++-++.++.=-.++++. ...... ..+ ++..+...+..++..... + .... ....-+.+
T Consensus 41 q~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~ 119 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEE 119 (331)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHH
Confidence 58999999 99887765423334554 433211 112 233455555555543321 1 1111 23333444
Q ss_pred Hh---cCCeEEEEEeCcc----------------------CC------------------hHHHH----HhCcCcEEEcC
Q 005085 69 RL---QRMKVFIVLDDVN----------------------KD------------------KTILE----RYGTQRIYEVE 101 (715)
Q Consensus 69 ~L---~~kr~LlVLDDv~----------------------r~------------------~~v~~----~~~~~~~~~l~ 101 (715)
.+ .+++.+|++|+|+ |. ..... .......++++
T Consensus 120 ~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~ 199 (331)
T PF14516_consen 120 YLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELP 199 (331)
T ss_pred HHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCC
Confidence 43 2689999999997 00 00000 01233578899
Q ss_pred CCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhcccCC
Q 005085 102 GLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSSFYGK 154 (715)
Q Consensus 102 ~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~k 154 (715)
+++.+|...|..++-.. ... ...+++....+|.|--+..++..+...
T Consensus 200 ~Ft~~ev~~L~~~~~~~--~~~----~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 200 DFTPEEVQELAQRYGLE--FSQ----EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHhhhcc--CCH----HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999998876432 111 228899999999999998888888653
No 117
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.019 Score=33.65 Aligned_cols=22 Identities=5% Similarity=-0.162 Sum_probs=17.7
Q ss_pred CcCeEEecCccCCCCCCCCCCCCC
Q 005085 536 ETKNWMHPYCKHYPITRVKDYSST 559 (715)
Q Consensus 536 ~L~~L~l~~n~L~~~~lp~~l~~l 559 (715)
+|++||+++|.++. +|++++++
T Consensus 1 ~L~~Ldls~n~l~~--ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS--IPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESE--EGTTTTT-
T ss_pred CccEEECCCCcCEe--CChhhcCC
Confidence 58899999999987 99887653
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.46 E-value=0.18 Score=54.12 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=30.3
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHHHhCCCc
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCAFKENHCP-EDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~af~~~~~~-~~~~~~~~~i~~~c~glP 141 (715)
.+..++++..+.++..++|..++.+..... -++ ..+++.+.|..
T Consensus 284 fd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 284 FDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 356789999999999999998875543222 233 45666676654
No 119
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.32 E-value=0.16 Score=51.28 Aligned_cols=64 Identities=16% Similarity=0.307 Sum_probs=39.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
.+|+|||.|| ++.+++.+.=-.+.++. +.+++.++....... ....++.+.++.- =||||
T Consensus 113 ~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~~-------~~~~~l~~~l~~~-dlLIi 173 (254)
T COG1484 113 PPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDEG-------RLEEKLLRELKKV-DLLII 173 (254)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcC-------chHHHHHHHhhcC-CEEEE
Confidence 3699999999 99998874434455665 344555554443331 2334444433332 47789
Q ss_pred eCcc
Q 005085 80 DDVN 83 (715)
Q Consensus 80 DDv~ 83 (715)
||+.
T Consensus 174 DDlG 177 (254)
T COG1484 174 DDIG 177 (254)
T ss_pred eccc
Confidence 9997
No 120
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.32 E-value=0.091 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
++|+||||+| .+...+.......+.+.
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 10 PPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 4799999999 88887655543344443
No 121
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.26 E-value=0.36 Score=53.79 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=33.5
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
...+++.+++.++..+.+.+.+-...... -++....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 35789999999999999887764332211 1245778888999877433
No 122
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.53 Score=50.42 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=30.3
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcch
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+++++++.++..+...+.+-... ..+ ++.+..|++.++|.|-.
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRD 216 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 5789999999998887776553322 112 24567788888887743
No 123
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.12 E-value=0.27 Score=50.58 Aligned_cols=94 Identities=15% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchh-hhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREE-SEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIV 78 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 78 (715)
++|+|||||| .+...-+++= .-||+ .|.. ....+ +++|.+ +... ...+.++|-.|.
T Consensus 170 ppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~d-vR~ife----~aq~--------------~~~l~krkTilF 227 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTND-VRDIFE----QAQN--------------EKSLTKRKTILF 227 (554)
T ss_pred CCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHH-HHHHHH----HHHH--------------HHhhhcceeEEE
Confidence 5899999999 7776544432 44565 4332 22223 333332 2211 124567888888
Q ss_pred EeCccCChHHHH-----------------------------HhCcCcEEEcCCCCHHHHHHHHHhhh
Q 005085 79 LDDVNKDKTILE-----------------------------RYGTQRIYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 79 LDDv~r~~~v~~-----------------------------~~~~~~~~~l~~L~~~es~~LF~~~a 116 (715)
+|.|.|-..+.+ ......++.+++|+.++-..++.+.+
T Consensus 228 iDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 228 IDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred eHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 999973222211 11224688999999999998888743
No 124
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.07 E-value=0.1 Score=49.53 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=34.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
..|+|||.|| ++.+.+..+=..+.|+. ..++...+-..- . + .....+.+.+.+- =||||
T Consensus 55 ~~G~GKThLa~ai~~~~~~~g~~v~f~~-----------~~~L~~~l~~~~-~------~-~~~~~~~~~l~~~-dlLil 114 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEAIRKGYSVLFIT-----------ASDLLDELKQSR-S------D-GSYEELLKRLKRV-DLLIL 114 (178)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEE-----------HHHHHHHHHCCH-C------C-TTHCHHHHHHHTS-SCEEE
T ss_pred hHhHHHHHHHHHHHHHhccCCcceeEee-----------cCceeccccccc-c------c-cchhhhcCccccc-cEecc
Confidence 3699999999 88886554434456665 344444442211 0 0 1122333445443 46679
Q ss_pred eCcc
Q 005085 80 DDVN 83 (715)
Q Consensus 80 DDv~ 83 (715)
||+.
T Consensus 115 DDlG 118 (178)
T PF01695_consen 115 DDLG 118 (178)
T ss_dssp ETCT
T ss_pred cccc
Confidence 9996
No 125
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.04 E-value=0.033 Score=32.59 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=14.9
Q ss_pred cccEEEecCCCcccccccCCC
Q 005085 310 ESYRTQLSFKKVEQIWEGQKK 330 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~ 330 (715)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776554
No 126
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.02 E-value=0.13 Score=49.06 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=16.0
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+|||||. +++.++...
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 4799999999 999987766
No 127
>PRK06526 transposase; Provisional
Probab=94.02 E-value=0.097 Score=52.79 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
++|+|||+|| ++......+-..+.|+. ..++.+++....... .....+++ +. +.=+||+
T Consensus 106 p~GtGKThLa~al~~~a~~~g~~v~f~t-----------~~~l~~~l~~~~~~~-------~~~~~l~~-l~-~~dlLII 165 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRACQAGHRVLFAT-----------AAQWVARLAAAHHAG-------RLQAELVK-LG-RYPLLIV 165 (254)
T ss_pred CCCCchHHHHHHHHHHHHHCCCchhhhh-----------HHHHHHHHHHHHhcC-------cHHHHHHH-hc-cCCEEEE
Confidence 4799999999 88876544322333433 334444443321110 22233333 22 3458899
Q ss_pred eCcc
Q 005085 80 DDVN 83 (715)
Q Consensus 80 DDv~ 83 (715)
||+.
T Consensus 166 DD~g 169 (254)
T PRK06526 166 DEVG 169 (254)
T ss_pred cccc
Confidence 9996
No 128
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.44 Score=55.64 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=32.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
..|++++|+.++..+.+.+.+-..... --.+....|++.++|.|-.+
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 689999999999998887655321111 11356788999999987433
No 129
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.85 E-value=0.31 Score=56.33 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCCCcHHHHH-HHHHHhhc-----cCCc--eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCC-CCC-cchHHHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-----KFEG--KYFMANVREESEKCGVLVHLRNQVLSKVLGENFDI-GTQ-KIPQYIRDRL 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-----~F~~--~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~-~~~-~~~~~l~~~L 70 (715)
++|.|||+.+ .|.+++.. ..+. .+.|-. ... .. ...+...|..++....... ... +....+...+
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC-m~L---st-p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING-MNV---VH-PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC-Ccc---CC-HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4799999999 88886532 1221 233321 111 12 4455555666664333211 111 3445555555
Q ss_pred c---CCeEEEEEeCcc
Q 005085 71 Q---RMKVFIVLDDVN 83 (715)
Q Consensus 71 ~---~kr~LlVLDDv~ 83 (715)
. +...+||||+|+
T Consensus 864 ~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 864 KKDNRNVSILIIDEID 879 (1164)
T ss_pred hcccccceEEEeehHh
Confidence 2 234589999998
No 130
>PRK04195 replication factor C large subunit; Provisional
Probab=93.81 E-value=0.49 Score=52.79 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=28.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai 144 (715)
..+++++++.++....+.+.+.... ..+ .+....|++.++|-.-.+
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSA 199 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4577788888887777666553322 122 245677777777755433
No 131
>COG3899 Predicted ATPase [General function prediction only]
Probab=93.79 E-value=0.26 Score=58.66 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=43.3
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhcccC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSSFYG 153 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 153 (715)
-..+.+.||+..|...+...........+ .+....|.+|..|.|+.+.-+-.++..
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~~~~---~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTKLLP---APLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCccccc---chHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 36799999999999999887664423222 356899999999999999877776653
No 132
>PRK09183 transposase/IS protein; Provisional
Probab=93.78 E-value=0.22 Score=50.52 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=17.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+|||||| ++.......-..+.++.
T Consensus 110 p~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 110 PSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4799999999 88776443322333443
No 133
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.72 E-value=0.044 Score=29.79 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=8.7
Q ss_pred CCcCeEEecCccCCC
Q 005085 535 PETKNWMHPYCKHYP 549 (715)
Q Consensus 535 p~L~~L~l~~n~L~~ 549 (715)
|+|+.|++++|.|+.
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 467777777777766
No 134
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.63 E-value=0.24 Score=51.39 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=36.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEEe
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVLD 80 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD 80 (715)
.|+|||.|| ++.+.+..+=..+.++. +..+..++-...... .. ....+.++ +-=|||||
T Consensus 165 ~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-------~~-~~~l~~l~-~~dlLiID 224 (306)
T PRK08939 165 FGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-------SV-KEKIDAVK-EAPVLMLD 224 (306)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-------cH-HHHHHHhc-CCCEEEEe
Confidence 699999999 99998765544456665 223333443332211 12 22223343 45678899
Q ss_pred Ccc
Q 005085 81 DVN 83 (715)
Q Consensus 81 Dv~ 83 (715)
|+.
T Consensus 225 DiG 227 (306)
T PRK08939 225 DIG 227 (306)
T ss_pred cCC
Confidence 996
No 135
>PRK08118 topology modulation protein; Reviewed
Probab=93.52 E-value=0.055 Score=50.84 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=20.3
Q ss_pred CCCCcHHHHH-HHHHHhh---ccCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFS---QKFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~---~~F~~~~wv 26 (715)
++|+|||||| +++++.. -+||..+|-
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5899999999 9998743 457777753
No 136
>PRK06620 hypothetical protein; Validated
Probab=93.46 E-value=0.48 Score=46.50 Aligned_cols=52 Identities=4% Similarity=-0.163 Sum_probs=30.9
Q ss_pred hHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCC-CCCChhHHHHHHHHHHHhCCC
Q 005085 86 KTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKE-NHCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 86 ~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~-~~~~~~~~~~~~~i~~~c~gl 140 (715)
.++...+...-++++++++.++-.++..+.+-.. ...+ +++.+-|++.+.|-
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---~ev~~~L~~~~~~d 182 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS---RQIIDFLLVNLPRE 182 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCC
Confidence 4455555556688888888888777776665321 1122 24556666666543
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.34 E-value=0.12 Score=55.73 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCCCcHHHHH-HHHHHhh--ccCCceEEEEecchhhh
Q 005085 1 MGGIGKTTIG-VVFNQFS--QKFEGKYFMANVREESE 34 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~--~~F~~~~wv~~v~~~~~ 34 (715)
|+|+||||+| ++++.+. ..|+...||. +++.+.
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-FHpsyS 237 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-FHQSYS 237 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEe-eccccc
Confidence 6899999999 9888754 4567777887 665543
No 138
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.25 E-value=0.95 Score=43.37 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=30.3
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcch
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+++.+++.++..+...+. + .. ++.+..+++.++|.|..
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~--g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ--G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc--C---CC---HHHHHHHHHHcCCCccc
Confidence 58899999999988887776 1 11 35678889999988753
No 139
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.16 E-value=0.42 Score=52.21 Aligned_cols=44 Identities=7% Similarity=-0.158 Sum_probs=29.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glP 141 (715)
..|.+.+++.++..+.+.+.+-.....- -++....|++.++|.+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~--e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQY--DQEGLFWIAKKGDGSV 216 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCChH
Confidence 4689999998888877776553221111 1345678888888877
No 140
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.98 Score=49.91 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=33.9
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCC-CcchhHHhhh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKG-NPLALQVLGS 149 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~g-lPLai~~~g~ 149 (715)
...+++.+++.++....+.+.+-... ..+ ++....|+++++| ++.|+..+..
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 35788899999998888777663322 222 2456778887765 4566655544
No 141
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.74 E-value=0.09 Score=46.87 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.+...
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 4799999999 8888764
No 142
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.71 E-value=1.3 Score=44.33 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCcchhHHhhhcccC
Q 005085 126 LLKHSETAVHYAKGNPLALQVLGSSFYG 153 (715)
Q Consensus 126 ~~~~~~~i~~~c~glPLai~~~g~~L~~ 153 (715)
-.++.+.+.++.+|=|.++.++|..+..
T Consensus 262 D~k~L~~li~~f~GgPVGl~tia~~lge 289 (332)
T COG2255 262 DRKYLRALIEQFGGGPVGLDTIAAALGE 289 (332)
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHhcC
Confidence 3567788999999999999999998853
No 143
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=1.1 Score=49.42 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=30.8
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
...+++++++.++..+.+.+.+-.....-+ ++....|++.++|-+-
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR 212 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMR 212 (491)
T ss_pred heeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 357889999999988888776643221111 2446778888888664
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.57 E-value=0.34 Score=53.61 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.1
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|.|||++| ++++.+...
T Consensus 224 PPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 224 PPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCCcHHHHHHHHHHhhccc
Confidence 5899999999 999987554
No 145
>PRK06921 hypothetical protein; Provisional
Probab=92.55 E-value=0.21 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.5
Q ss_pred CCCcHHHHH-HHHHHhhcc-CCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQK-FEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~-F~~~~wv~ 27 (715)
.|+|||+|| ++.+.+.++ -..++++.
T Consensus 126 ~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 126 PGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 699999999 999987665 45556776
No 146
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.50 E-value=2.2 Score=42.22 Aligned_cols=51 Identities=12% Similarity=-0.078 Sum_probs=35.2
Q ss_pred EEcCCCCHHHHHHHHHhhhcCCCCCChhH-HHHHHHHHHHhCCCcchhHHhh
Q 005085 98 YEVEGLNCNEVLRLFSSCAFKENHCPEDL-LKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 98 ~~l~~L~~~es~~LF~~~af~~~~~~~~~-~~~~~~i~~~c~glPLai~~~g 148 (715)
|+++|++.++.......+.-+...+.+=+ .+....|.....|.|.+|..++
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 99999999988877776654332222111 3556778888999999886655
No 147
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.50 E-value=0.68 Score=40.97 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=4.6
Q ss_pred CCCCCCccEEeec
Q 005085 328 QKKAPKLKYVDLN 340 (715)
Q Consensus 328 ~~~l~~L~~L~L~ 340 (715)
+.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3444445555444
No 148
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.42 E-value=1.1 Score=50.95 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=29.9
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcch
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+++++++.++..+.+.+.+-... ... .+....|++.++|-+-.
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRD 215 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 5788999999888887776553322 111 24567788888886633
No 149
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.33 E-value=1.1 Score=50.58 Aligned_cols=49 Identities=6% Similarity=0.012 Sum_probs=32.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
..+.++.++.++..+.+.+.+-...... -.+..+.|++.++|.|.....
T Consensus 176 q~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 176 LQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 5789999999999888776553222111 124567889999998854433
No 150
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=1.2 Score=49.97 Aligned_cols=51 Identities=20% Similarity=0.062 Sum_probs=28.9
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCc-chhHHh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNP-LALQVL 147 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 147 (715)
..++++.+++.++..+...+.+-..... --+.....|++.++|-+ -|+..+
T Consensus 170 c~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 170 CIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3578888898888776666533221111 11234567777888755 344333
No 151
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.21 E-value=0.59 Score=41.38 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=38.3
Q ss_pred cChhhhcCCCCccEEEEeecCccccccCCc-cccccccccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcccCC-
Q 005085 274 LDPRAFTNMSNVRLLKFYISGHFDVSKMSS-KVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIPE- 350 (715)
Q Consensus 274 l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~-~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~- 350 (715)
++..+|.++.+|+.+.+. +. ...++. .+....+|+.+.+..+ +..++.. +.++++|+.+.+.++ ...++.
T Consensus 3 i~~~~F~~~~~l~~i~~~-~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~ 75 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFP-NT---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDN 75 (129)
T ss_dssp E-TTTTTT-TT--EEEET-ST-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TT
T ss_pred ECHHHHhCCCCCCEEEEC-CC---eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccc
Confidence 345567777777766654 10 111111 1122234555555443 4444432 455555666666432 222222
Q ss_pred -CCCCCcceEEEEecCCCCcccC-chhhcccccceEecc
Q 005085 351 -PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMA 387 (715)
Q Consensus 351 -~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~ 387 (715)
+..+++|+.+.+..+ ...++ ..+.+. +|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 455556666655432 22222 334443 55555544
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.20 E-value=0.48 Score=49.66 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=20.1
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.|+|||+|| ++.+.+..+-..++++.
T Consensus 192 ~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 192 TGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 699999999 99997665544566665
No 153
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.14 E-value=1.2 Score=47.07 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=27.4
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcch
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+++.+++.++..+.+.+.+-... ..+ .+..+.+++.++|.+-.
T Consensus 177 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 177 LPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRK 222 (337)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 4677788888887777776543222 112 24566777777775533
No 154
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.09 E-value=1.1 Score=51.47 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=32.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCc-chhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNP-LALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 146 (715)
..+.++.++.++..+.+.+.+-...... -.+..+.|++.++|.. -|+..
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 5789999999999988877653322111 1355678888998854 45444
No 155
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=0.8 Score=48.55 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=35.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
..+.+.+++.++..+...+...... .. ++....+++.++|.|.....+.
T Consensus 193 ~~i~l~pl~~~~~~~~L~~~~~~~~-~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 193 QPISLKPLDDDELKKALSHLGSSQG-SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred cEEEecCCCHHHHHHHHHHhhcccC-CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5899999999999999887432211 11 3456788999999997665444
No 156
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.88 E-value=0.2 Score=49.70 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++.......-..++|+.
T Consensus 31 ~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 31 PPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4799999999 77776655567788887
No 157
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=91.83 E-value=0.88 Score=52.19 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=18.5
Q ss_pred cchHHHHHHhcCCeEEEEEeCcc
Q 005085 61 KIPQYIRDRLQRMKVFIVLDDVN 83 (715)
Q Consensus 61 ~~~~~l~~~L~~kr~LlVLDDv~ 83 (715)
..+..+.+.++++++.++-|+.|
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceec
Confidence 46788889999999999877654
No 158
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.74 E-value=0.24 Score=48.50 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++......+-..++|+.
T Consensus 20 ~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4799999999 77766555567888997
No 159
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.42 E-value=1.6 Score=45.60 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=30.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHHHhCCCcch
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENH-CPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~-~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+++++++.++......+.+-.... .+ ++....+++.++|.+--
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRK 199 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 36889999999988887776643221 12 24567778888887643
No 160
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.38 E-value=0.18 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCCCcHHHHH-HHHHHhhcc-CCce-EEEEecchh
Q 005085 1 MGGIGKTTIG-VVFNQFSQK-FEGK-YFMANVREE 32 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~-F~~~-~wv~~v~~~ 32 (715)
|+|+||||++ .+.+.+++. |... +|...|++.
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g 47 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG 47 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC
Confidence 7999999999 999987765 7654 455555544
No 161
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.34 E-value=0.88 Score=49.12 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=17.6
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhh
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~a 116 (715)
.+..++++..+.++..++|..+.
T Consensus 307 fd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHH
Confidence 35678888888888888887654
No 162
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.19 E-value=2.9 Score=42.77 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCce-----EEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhcC-C
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGK-----YFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQR-M 73 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~-----~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~~-k 73 (715)
.|+||||++ +..+..-..++.. +++... -..++ ..++...|+..++..-...+.. ....++...++. +
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~---P~~p~-~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~ 145 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM---PPEPD-ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG 145 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec---CCCCC-hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC
Confidence 589999999 7776433333321 222212 22345 7899999999988765433333 444555556643 4
Q ss_pred eEEEEEeCcc
Q 005085 74 KVFIVLDDVN 83 (715)
Q Consensus 74 r~LlVLDDv~ 83 (715)
-=+||+|.+.
T Consensus 146 vrmLIIDE~H 155 (302)
T PF05621_consen 146 VRMLIIDEFH 155 (302)
T ss_pred CcEEEeechH
Confidence 4577899997
No 163
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.06 E-value=0.38 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.5
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhhcC
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCAFK 118 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~af~ 118 (715)
.+..++++..+.++..++|..++-+
T Consensus 345 fd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 345 IDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3568899999999999999977643
No 164
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.03 E-value=1.6 Score=49.94 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=31.6
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcch
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLa 143 (715)
...|.+.+|+.++..+.+.+.+-...... -++....|++.++|.+-.
T Consensus 170 C~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 170 CLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRD 216 (647)
T ss_pred heEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 36899999999999888776542211111 124567888999997743
No 165
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.92 E-value=2 Score=46.09 Aligned_cols=142 Identities=14% Similarity=0.218 Sum_probs=78.9
Q ss_pred CCCcHHHHH-HHHHHhhccCCc--eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhcCCe--E
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEG--KYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQRMK--V 75 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~--~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~~kr--~ 75 (715)
+|.|||.+. .++.+....... ++.+...+= .. ..++.+.|...+......-... +....+.+..++.+ +
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl----~~-~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~ 258 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL----TE-ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFML 258 (529)
T ss_pred CCcchHHHHHHHHHhhhhhcccceeEEEeeccc----cc-hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceE
Confidence 699999999 999976554433 234432220 12 5567777777663222111122 56677777776644 8
Q ss_pred EEEEeCcc----CCh------------------------------HHHHHhC-----cCcEEEcCCCCHHHHHHHHHhhh
Q 005085 76 FIVLDDVN----KDK------------------------------TILERYG-----TQRIYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 76 LlVLDDv~----r~~------------------------------~v~~~~~-----~~~~~~l~~L~~~es~~LF~~~a 116 (715)
++|||.++ |++ +.+-... ....+..++-+.++-.+++..+.
T Consensus 259 llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 259 LLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred EEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 99999997 111 1111111 23567778888888888888876
Q ss_pred cCCCC---CChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 117 FKENH---CPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 117 f~~~~---~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
-.... .+..++-.|++++.-.|.+--|+.+.-
T Consensus 339 ~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 339 SEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 32211 122334444444444444445544443
No 166
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.89 E-value=1.6 Score=47.14 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=32.6
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVL 147 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (715)
..+.+++++.++..+.+.+.. + .+ .+.+..++..++|.|.....+
T Consensus 169 ~~i~f~~~~~~~i~~~L~~~~-~---~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 169 RHVALRTPSVEAVAEVLVRRD-G---VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred eEEECCCCCHHHHHHHHHHhc-C---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 588999999999988887432 1 11 244678899999999755444
No 167
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.89 E-value=1.6 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=18.4
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFK 118 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~ 118 (715)
+..++++..+.++-.++|..++.+
T Consensus 294 d~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 294 DRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred ceEEEECCCCHHHHHHHHHHHhcc
Confidence 456888888888888888877643
No 168
>PRK04132 replication factor C small subunit; Provisional
Probab=90.88 E-value=1.8 Score=51.02 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=31.8
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcch
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLa 143 (715)
...+.+++++.++-.+.+.+.+-... ..+ ++....|++.++|.+-.
T Consensus 681 C~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 681 CAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRR 727 (846)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 35889999999888877665543221 112 34678899999998743
No 169
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.63 E-value=2.3 Score=48.51 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=31.3
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
...++++.++.++..+.+.+.+-......+ .+....|++.++|.+--+
T Consensus 175 c~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 175 CLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDA 222 (618)
T ss_pred ceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 367899999999888877765533221111 245677888888866433
No 170
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.58 E-value=0.21 Score=47.39 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=22.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+||||+| ++++.+...+...+++.
T Consensus 15 ~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4799999999 99999888887777764
No 171
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.42 E-value=0.4 Score=45.52 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEe-cchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMAN-VREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIV 78 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~-v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 78 (715)
.+|+||||+| ++...+++.-...+-+.. -+..+...+ -.-+.++.......+ .....|-..|+ .+++|
T Consensus 9 yPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DE-slpi~ke~yres~~k-------s~~rlldSalk--n~~VI 78 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDE-SLPILKEVYRESFLK-------SVERLLDSALK--NYLVI 78 (261)
T ss_pred CCCCCchHHHHHHHHHHHHhhhhccccchhhhhheeccc-ccchHHHHHHHHHHH-------HHHHHHHHHhc--ceEEE
Confidence 4899999999 888866655444433321 000010001 112233333332221 12224444454 89999
Q ss_pred EeCcc
Q 005085 79 LDDVN 83 (715)
Q Consensus 79 LDDv~ 83 (715)
.||..
T Consensus 79 vDdtN 83 (261)
T COG4088 79 VDDTN 83 (261)
T ss_pred Eeccc
Confidence 99997
No 172
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.15 E-value=0.19 Score=45.49 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCC--CCCCCCCcchHHHHHHhcCCeEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGE--NFDIGTQKIPQYIRDRLQRMKVFI 77 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~Ll 77 (715)
..|+|||+|| ++.... +..++...++...+ ..++ ....... ........+...++ +...+
T Consensus 7 ~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~~----~~dl----~g~~~~~~~~~~~~~~~l~~a~~-----~~~il 69 (139)
T PF07728_consen 7 PPGTGKTTLARELAALL----GRPVIRINCSSDTT----EEDL----IGSYDPSNGQFEFKDGPLVRAMR-----KGGIL 69 (139)
T ss_dssp SSSSSHHHHHHHHHHHH----TCEEEEEE-TTTST----HHHH----HCEEET-TTTTCEEE-CCCTTHH-----EEEEE
T ss_pred CCCCCHHHHHHHHHHHh----hcceEEEEeccccc----cccc----eeeeeeccccccccccccccccc-----ceeEE
Confidence 4799999999 887766 44444444544332 2222 2222211 11111111211111 88999
Q ss_pred EEeCccCC-hHHHH
Q 005085 78 VLDDVNKD-KTILE 90 (715)
Q Consensus 78 VLDDv~r~-~~v~~ 90 (715)
|||++.+. ..+..
T Consensus 70 ~lDEin~a~~~v~~ 83 (139)
T PF07728_consen 70 VLDEINRAPPEVLE 83 (139)
T ss_dssp EESSCGG--HHHHH
T ss_pred EECCcccCCHHHHH
Confidence 99999942 34433
No 173
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.04 E-value=1.9 Score=48.45 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=24.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..++++.++.++..+.+.+.+-...... -+...+.|++.++|.+-
T Consensus 171 ~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr 215 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMR 215 (527)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 3567777777777666555432111111 12345667777777653
No 174
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.02 E-value=3.3 Score=43.31 Aligned_cols=133 Identities=14% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCCCcHHHHH-HHHHHh------hccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----------CCCCC--c
Q 005085 1 MGGIGKTTIG-VVFNQF------SQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----------DIGTQ--K 61 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~------~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----------~~~~~--~ 61 (715)
+.|+||||+| +++..+ ..|.|...|.. .... ... +.+|. ++...+..... +.+.. +
T Consensus 34 ~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~~--~i~-v~~ir-~~~~~~~~~p~~~~~kv~iI~~ad~m~~~ 108 (313)
T PRK05564 34 EDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INKK--SIG-VDDIR-NIIEEVNKKPYEGDKKVIIIYNSEKMTEQ 108 (313)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccCC--CCC-HHHHH-HHHHHHhcCcccCCceEEEEechhhcCHH
Confidence 4799999999 888753 24556555543 1111 112 33322 23332221110 11111 4
Q ss_pred chHHHHHHhcC---C-eEEEEEeCccCC-hHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHH
Q 005085 62 IPQYIRDRLQR---M-KVFIVLDDVNKD-KTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHY 136 (715)
Q Consensus 62 ~~~~l~~~L~~---k-r~LlVLDDv~r~-~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~ 136 (715)
.++.+.+.|+. . .++++=++..+- +.+.+. ..++.++++++++..+...+.. ... . ++.++.++..
T Consensus 109 a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR---c~~~~~~~~~~~~~~~~l~~~~-~~~--~---~~~~~~l~~~ 179 (313)
T PRK05564 109 AQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR---CQIYKLNRLSKEEIEKFISYKY-NDI--K---EEEKKSAIAF 179 (313)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh---ceeeeCCCcCHHHHHHHHHHHh-cCC--C---HHHHHHHHHH
Confidence 55667777753 2 233332444322 112222 3589999999999877665543 211 1 2336778899
Q ss_pred hCCCcchhHHh
Q 005085 137 AKGNPLALQVL 147 (715)
Q Consensus 137 c~glPLai~~~ 147 (715)
++|.|..+...
T Consensus 180 ~~g~~~~a~~~ 190 (313)
T PRK05564 180 SDGIPGKVEKF 190 (313)
T ss_pred cCCCHHHHHHH
Confidence 99988765443
No 175
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=0.62 Score=52.21 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=37.9
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchh-hhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREE-SEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
.|+|||+|| ++++.+.+ +..++|.-|+-. ..... +.++|+.+-. .+.+.+.-..-+|||
T Consensus 440 ~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~-~e~iQk~l~~----------------vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSS-LEKIQKFLNN----------------VFSEALWYAPSIIVL 500 (952)
T ss_pred CCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchh-HHHHHHHHHH----------------HHHHHHhhCCcEEEE
Confidence 699999999 99998774 333344322211 11122 4555554432 233345567789999
Q ss_pred eCcc
Q 005085 80 DDVN 83 (715)
Q Consensus 80 DDv~ 83 (715)
||++
T Consensus 501 Ddld 504 (952)
T KOG0735|consen 501 DDLD 504 (952)
T ss_pred cchh
Confidence 9997
No 176
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=1.8 Score=49.60 Aligned_cols=45 Identities=9% Similarity=-0.031 Sum_probs=26.8
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+.++.++.++..+.+.+.+-...... -.+....|++.++|.+-
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMR 215 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHH
Confidence 3566778888887776665543221111 12456778888888763
No 177
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.93 E-value=4.9 Score=42.89 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=34.2
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
...+.+.+++.++..+...+.... ..+ .....+++.++|.|.....+.
T Consensus 192 c~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 192 CRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 457899999999999998875421 111 112678999999998665554
No 178
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=89.87 E-value=0.89 Score=49.51 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||||+ .+...++...+..+-+..+.+..+ + +.++.+++...-..... ...+. ...-.+.
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~r--E-v~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiA 229 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR--E-GNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMA 229 (463)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH--H-HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999 776655433233333333544432 3 56666666553211110 11111 1123355
Q ss_pred HHh---cCCeEEEEEeCccCChH
Q 005085 68 DRL---QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 68 ~~L---~~kr~LlVLDDv~r~~~ 87 (715)
+++ ++|.+|+++||+.|--+
T Consensus 230 Eyfrd~~G~~VLll~DslTR~A~ 252 (463)
T PRK09280 230 EYFRDVEGQDVLLFIDNIFRFTQ 252 (463)
T ss_pred HHHHHhcCCceEEEecchHHHHH
Confidence 555 67999999999984433
No 179
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=89.80 E-value=0.41 Score=48.59 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=42.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-CCCCC-cchHHHHHHhcCCeEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-DIGTQ-KIPQYIRDRLQRMKVFI 77 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-~~~~~-~~~~~l~~~L~~kr~Ll 77 (715)
+.|.||||+| +++-.+...-...+|+. .-..+.... ++.+.......+..... +.... ..++.+.+....+--||
T Consensus 68 ~~gsGKT~lal~~~~~aq~~g~~a~fID-tE~~l~p~r-~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~Lv 145 (279)
T COG0468 68 PESSGKTTLALQLVANAQKPGGKAAFID-TEHALDPER-AKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLL 145 (279)
T ss_pred CCCcchhhHHHHHHHHhhcCCCeEEEEe-CCCCCCHHH-HHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEE
Confidence 4699999999 87776666666889998 333333222 33333332111111111 11111 33333333334456788
Q ss_pred EEeCcc
Q 005085 78 VLDDVN 83 (715)
Q Consensus 78 VLDDv~ 83 (715)
|+|-|-
T Consensus 146 VVDSva 151 (279)
T COG0468 146 VVDSVA 151 (279)
T ss_pred EEecCc
Confidence 888876
No 180
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.70 E-value=2.1 Score=47.85 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=23.2
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+++++++.++..+...+.+-......+ .+....|++.++|-+-
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR 215 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVR 215 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHH
Confidence 45677777777665544433311111111 1335566777777663
No 181
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=0.1 Score=49.30 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=41.9
Q ss_pred CCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc-hhc-cCCccccccccccccccccc-chhhcCCCCCCEE
Q 005085 447 NLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP-EIL-EKMELLEEINLEEASNIKEL-PSSIENLEGLKQL 523 (715)
Q Consensus 447 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~-~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L 523 (715)
.++.++-+++.+...--+.+.++++++.|.+.+|...+..- +.+ +-.++|+.|+|++|+.+++- -.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34455555554444444445555666666666664443221 111 13456666666666554432 2345566666666
Q ss_pred EecCCC
Q 005085 524 KLTGCT 529 (715)
Q Consensus 524 ~Ls~n~ 529 (715)
.|.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 665543
No 182
>PTZ00202 tuzin; Provisional
Probab=89.59 E-value=0.99 Score=48.38 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=42.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh-----c-CC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRL-----Q-RM 73 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L-----~-~k 73 (715)
++|+|||||+ .+..... ..+++.+.. + ..++.+.++..++........ ++...|.+.| . |+
T Consensus 294 ~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g-~eElLr~LL~ALGV~p~~~k~-dLLrqIqeaLl~~~~e~Gr 361 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG----MPAVFVDVR------G-TEDTLRSVVKALGVPNVEACG-DLLDFISEACRRAKKMNGE 361 (550)
T ss_pred CCCCCHHHHHHHHHhcCC----ceEEEECCC------C-HHHHHHHHHHHcCCCCcccHH-HHHHHHHHHHHHHHHhCCC
Confidence 5799999999 7775543 225554443 2 578888888888864322111 4555555544 2 77
Q ss_pred eEEEEE
Q 005085 74 KVFIVL 79 (715)
Q Consensus 74 r~LlVL 79 (715)
+.+||+
T Consensus 362 tPVLII 367 (550)
T PTZ00202 362 TPLLVL 367 (550)
T ss_pred CEEEEE
Confidence 888887
No 183
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=89.50 E-value=2.5 Score=42.96 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| .+++.+
T Consensus 50 ppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 50 NPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 4899999999 777754
No 184
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.37 E-value=0.26 Score=26.71 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=5.9
Q ss_pred cccEEEecCCCcccc
Q 005085 310 ESYRTQLSFKKVEQI 324 (715)
Q Consensus 310 ~L~~L~L~~~~l~~l 324 (715)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 185
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.35 E-value=1.6 Score=39.43 Aligned_cols=16 Identities=25% Similarity=0.411 Sum_probs=12.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| ++....
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 5899999999 776543
No 186
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=89.26 E-value=1.1 Score=45.34 Aligned_cols=87 Identities=13% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCCcHHHHH-HHHHHhh----ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cch
Q 005085 2 GGIGKTTIG-VVFNQFS----QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIP 63 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~----~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~ 63 (715)
.|+|||||+ .+.++.. .+-+.++++- +.+... + +.++.+++...-..... ...++ ...
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~r--e-v~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a 153 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITME--D-ARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMA 153 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEE-eccccH--H-HHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHH
Confidence 589999999 8777643 2245566665 655432 3 56666666553211110 11111 112
Q ss_pred HHHHHHh---cCCeEEEEEeCccCChHHHHHh
Q 005085 64 QYIRDRL---QRMKVFIVLDDVNKDKTILERY 92 (715)
Q Consensus 64 ~~l~~~L---~~kr~LlVLDDv~r~~~v~~~~ 92 (715)
-.+.++. ++|++|+|+||+.|--+..+.+
T Consensus 154 ~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 154 LTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 2344554 3789999999998665554443
No 187
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=89.23 E-value=1.6 Score=44.37 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.+|+||||+| ++...+..
T Consensus 9 ~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 3799999999 88887665
No 188
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=89.07 E-value=1.2 Score=48.82 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=46.8
Q ss_pred CCCcHHHHH-HHHHHhh-ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHH
Q 005085 2 GGIGKTTIG-VVFNQFS-QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYI 66 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~-~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l 66 (715)
.|+|||||+ .+...+. ++-+.++++- +.+..+ + +.++.+++...-..... ...++ ..+-.+
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER~r--E-v~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~ti 227 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQHSGSSVFAG-VGERSR--E-GHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTI 227 (461)
T ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEEc-CCcchH--H-HHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHH
Confidence 699999999 7777654 4455556553 554432 3 55666666543211110 11111 123335
Q ss_pred HHHh---cCCeEEEEEeCccCChH
Q 005085 67 RDRL---QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 67 ~~~L---~~kr~LlVLDDv~r~~~ 87 (715)
.+++ ++|.+|+++||+.|--+
T Consensus 228 AEyfrd~~G~~VLl~~DslTR~A~ 251 (461)
T PRK12597 228 AEYLRDEEKEDVLLFIDNIFRFVQ 251 (461)
T ss_pred HHHHHHhcCCceEEEeccchHHHH
Confidence 5555 38999999999985433
No 189
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=88.99 E-value=1.2 Score=44.94 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=45.5
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-----CCCCC--c------chHHH
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-----DIGTQ--K------IPQYI 66 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~--~------~~~~l 66 (715)
.|+|||||| .+.++. +-+..+.+..+.+..+ + +.++.+++...-..... ..++. . .+-.+
T Consensus 78 ~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~--e-v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 78 RQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKAS--T-VAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred CCCCccHHHHHHHHHhc--CCCeEEEEEecccchH--H-HHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 479999996 566553 3355544444555432 3 56666666543211100 11110 0 12223
Q ss_pred HHHh--cCCeEEEEEeCccCChHHHHH
Q 005085 67 RDRL--QRMKVFIVLDDVNKDKTILER 91 (715)
Q Consensus 67 ~~~L--~~kr~LlVLDDv~r~~~v~~~ 91 (715)
.+++ ++|.+|+|+||+.|--+..+.
T Consensus 153 AE~fr~~G~~Vlvl~DslTr~A~A~rE 179 (274)
T cd01132 153 GEYFMDNGKHALIIYDDLSKQAVAYRQ 179 (274)
T ss_pred HHHHHHCCCCEEEEEcChHHHHHHHHH
Confidence 3333 589999999999865444433
No 190
>PRK07261 topology modulation protein; Provisional
Probab=88.89 E-value=1.3 Score=41.77 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+|||||| ++...
T Consensus 8 ~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 8 YSGSGKSTLARKLSQH 23 (171)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5899999999 88765
No 191
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=88.85 E-value=1.2 Score=44.88 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.3
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|+||||+| ++.......
T Consensus 7 ~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 5899999999 888776543
No 192
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.81 E-value=0.86 Score=45.09 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=19.3
Q ss_pred CCCCcHHHHH-HHHHHhhccC------CceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF------EGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F------~~~~wv~ 27 (715)
.+|+|||||| ++.......- ..++|+.
T Consensus 27 ~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 27 EFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3799999999 7765544444 5567887
No 193
>PRK12678 transcription termination factor Rho; Provisional
Probab=88.77 E-value=0.7 Score=51.15 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCCCcHHHHH-HHHHHhhc-cCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC-----C-cchHHHHHHh--
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-KFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT-----Q-KIPQYIRDRL-- 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-----~-~~~~~l~~~L-- 70 (715)
.+|+|||||+ .|.+.+.. +=++.++|..|.+... + +.++.+.+-..+.....+... . .+...+.+++
T Consensus 424 pp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe--E-Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre 500 (672)
T PRK12678 424 PPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE--E-VTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVE 500 (672)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh--h-HHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999 99987654 4456666665544321 2 444444431111111111100 0 2334455555
Q ss_pred cCCeEEEEEeCccCChHHH
Q 005085 71 QRMKVFIVLDDVNKDKTIL 89 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~v~ 89 (715)
.++.+||++|++.|--...
T Consensus 501 ~G~dVlillDSlTR~ArAy 519 (672)
T PRK12678 501 LGKDVVVLLDSITRLGRAY 519 (672)
T ss_pred cCCCEEEEEeCchHHHHHH
Confidence 6899999999998544333
No 194
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=88.76 E-value=1.1 Score=48.90 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-------------cc
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-------------KI 62 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-------------~~ 62 (715)
.|+|||||| .+.++. .-+..|.+..+.+... + +.++.+++...-.-... ...++ ..
T Consensus 150 ~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGer~r--e-v~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~ai 224 (485)
T CHL00059 150 RQTGKTAVATDTILNQK--GQNVICVYVAIGQKAS--S-VAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 224 (485)
T ss_pred CCCCHHHHHHHHHHhcc--cCCeEEEEEEecCCch--H-HHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhH
Confidence 599999997 677663 3355534444655432 2 55555555443211110 01111 12
Q ss_pred hHHHHHHhcCCeEEEEEeCccCChHHH
Q 005085 63 PQYIRDRLQRMKVFIVLDDVNKDKTIL 89 (715)
Q Consensus 63 ~~~l~~~L~~kr~LlVLDDv~r~~~v~ 89 (715)
++.++. +||.+|+|+||+.|--...
T Consensus 225 AEyfr~--~G~~VLlv~DdlTr~A~A~ 249 (485)
T CHL00059 225 AEYFMY--RGRHTLIIYDDLSKQAQAY 249 (485)
T ss_pred HHHHHH--cCCCEEEEEcChhHHHHHH
Confidence 333433 5899999999998444333
No 195
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.74 E-value=3 Score=47.40 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=33.6
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHHHhCCCc-chhHHhhhc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENH-CPEDLLKHSETAVHYAKGNP-LALQVLGSS 150 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~-~~~~~~~~~~~i~~~c~glP-Lai~~~g~~ 150 (715)
..+++.+++.++..+.+.+.+..... .. .+.++.|++.++|.+ .|+..+...
T Consensus 171 q~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 171 QHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46788889988888877765543221 22 245677888888854 666665543
No 196
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.64 E-value=1.9 Score=48.74 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=28.2
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc-chhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP-LALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP-Lai~~~g 148 (715)
..+++.+++.++....+.+.+-... ..+ .+.+..+++.++|-+ .|+..+-
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 4677778888777776665442211 111 234567777777754 3443333
No 197
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.32 E-value=0.68 Score=45.57 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=19.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++......+=..++|+.
T Consensus 27 ~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 27 PPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4799999999 87766544445566775
No 198
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=88.31 E-value=1.4 Score=45.94 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=46.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC-------C-cchHHHHH--Hh
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT-------Q-KIPQYIRD--RL 70 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-------~-~~~~~l~~--~L 70 (715)
.|.|||-+. ++.+.. =...+|++ ..+.|. .+.+..+|+.+.+..+.+... . +.+..+.+ ..
T Consensus 39 sgTGKT~~~r~~l~~~---n~~~vw~n-~~ecft----~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~ 110 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKL---NLENVWLN-CVECFT----YAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAA 110 (438)
T ss_pred CCCchhHHHHHHHhhc---CCcceeee-hHHhcc----HHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHh
Confidence 589999999 888765 23467997 666665 666777777777422211111 1 22233333 12
Q ss_pred --cCCeEEEEEeCcc
Q 005085 71 --QRMKVFIVLDDVN 83 (715)
Q Consensus 71 --~~kr~LlVLDDv~ 83 (715)
+++.++||||+++
T Consensus 111 t~~d~~~~liLDnad 125 (438)
T KOG2543|consen 111 TNRDQKVFLILDNAD 125 (438)
T ss_pred hccCceEEEEEcCHH
Confidence 2569999999998
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.17 E-value=6 Score=41.58 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=33.0
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
..+.+.+++.+++.+.+.+.. +.. . ++.+..++..++|-|..+..+.
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~~-~~~-~----~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQAL-PES-D----ERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHhc-ccC-C----hHHHHHHHHHcCCCHHHHHHHH
Confidence 578999999999998887653 111 1 2335677899999997665543
No 200
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=0.16 Score=47.98 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=32.6
Q ss_pred CccEeecCCCcCCCccchhccCCcccccccccccccccccch-hh-cCCCCCCEEEecCCCCCC
Q 005085 471 YLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SI-ENLEGLKQLKLTGCTKLG 532 (715)
Q Consensus 471 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l-~~l~~L~~L~Ls~n~~~~ 532 (715)
.++.++-+++.+...--+.+.++++++.|.+.+|..+.+-.- -+ +-.++|+.|+|++|+-.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 466777776655544445566667777777777644433210 01 123455555555554433
No 201
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.73 E-value=0.65 Score=44.85 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=39.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHh---cC-Ce
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRL---QR-MK 74 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L---~~-kr 74 (715)
+.|+||||.+ ++..+.+.+=.....++ .+.+. .+ ..+=+++..+.++..-...... +..+.+++.+ +. +.
T Consensus 9 ptGvGKTTt~aKLAa~~~~~~~~v~lis--~D~~R-~g-a~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLKGKKVALIS--ADTYR-IG-AVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGY 84 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEE--ESTSS-TH-HHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTS
T ss_pred CCCCchHhHHHHHHHHHhhccccceeec--CCCCC-cc-HHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCC
Confidence 4799999999 88877665533344554 23332 22 3344455555555332222211 2333333333 22 33
Q ss_pred EEEEEeCccC
Q 005085 75 VFIVLDDVNK 84 (715)
Q Consensus 75 ~LlVLDDv~r 84 (715)
=+|++|=..|
T Consensus 85 D~vlIDT~Gr 94 (196)
T PF00448_consen 85 DLVLIDTAGR 94 (196)
T ss_dssp SEEEEEE-SS
T ss_pred CEEEEecCCc
Confidence 4777888763
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.30 E-value=4.9 Score=48.06 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.2
Q ss_pred cEEEcCCCCHHHHHHHHHh
Q 005085 96 RIYEVEGLNCNEVLRLFSS 114 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~ 114 (715)
.++.++.++.++..+++..
T Consensus 343 ~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3788889999998888653
No 203
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=87.25 E-value=0.18 Score=46.36 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
..|.|||||| ++..++...-....++.
T Consensus 10 lsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 4799999999 99998887766666664
No 204
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.18 E-value=3.4 Score=46.36 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=25.9
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHHHhCCC
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCAFKENH-CPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~af~~~~-~~~~~~~~~~~i~~~c~gl 140 (715)
-+..+.++..+.++-.++|..++-.... ...+ ...+++.+.|.
T Consensus 216 fd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 216 FDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGF 259 (495)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCC
Confidence 3467888888888888888776533221 1112 33566666663
No 205
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.00 E-value=2.5 Score=48.23 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=28.3
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
..++++++++.++....+.+.+-... ... .+.+..+++.++|..
T Consensus 178 c~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdl 222 (620)
T PRK14954 178 CQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSM 222 (620)
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCH
Confidence 46788899998887776665442211 122 245677888888844
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=86.91 E-value=0.76 Score=45.81 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=18.7
Q ss_pred CCCCcHHHHH-HHHHHhh-cc-----CCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFS-QK-----FEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~-~~-----F~~~~wv~ 27 (715)
.+|+|||||| ++.-... .. -..++|+.
T Consensus 27 ~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 27 EFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3799999999 7754322 21 36788887
No 207
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=4.6 Score=43.99 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=30.3
Q ss_pred CChHHHHHhCc----CcEEEcCCCCH-HHHHHHHHhh-hcCCCCCChhHHHHHHHHHHHh
Q 005085 84 KDKTILERYGT----QRIYEVEGLNC-NEVLRLFSSC-AFKENHCPEDLLKHSETAVHYA 137 (715)
Q Consensus 84 r~~~v~~~~~~----~~~~~l~~L~~-~es~~LF~~~-af~~~~~~~~~~~~~~~i~~~c 137 (715)
....|++.|+. +..|.|+.++. ++..+..+.. .|.++ +.+-++++.+.+|
T Consensus 649 S~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~----~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 649 SRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSDD----EVRAIAEQLLSKK 704 (744)
T ss_pred cHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCcc----hhHHHHHHHhccc
Confidence 34567777764 46788888877 6677666643 24433 3344555656555
No 208
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.63 E-value=8.2 Score=41.08 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=30.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
..+++++++.++..+.....+-......+ ++.+..+++.++|.|-.+..
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALS 217 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHH
Confidence 46778888888877777765532221111 25567778888887755433
No 209
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=86.56 E-value=0.45 Score=41.73 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| ++.++.
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 5799999999 877764
No 210
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=86.42 E-value=2.2 Score=46.47 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=43.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||||+ .+...+.......+-+..+.+..+ + +.++.+++...-..... ...++ ..+-.+.
T Consensus 152 ~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~r--E-v~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiA 228 (461)
T TIGR01039 152 AGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR--E-GNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMA 228 (461)
T ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEEEecCCch--H-HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999 776654432233333333544432 3 56666666443111110 01111 1233355
Q ss_pred HHh---cCCeEEEEEeCccCC
Q 005085 68 DRL---QRMKVFIVLDDVNKD 85 (715)
Q Consensus 68 ~~L---~~kr~LlVLDDv~r~ 85 (715)
++. +++.+|+|+||+.|-
T Consensus 229 Eyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 229 EYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHhcCCeeEEEecchhHH
Confidence 555 468999999999844
No 211
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.13 E-value=1.9 Score=46.12 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.1
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+|+|||||+ ++.....+.-...++++
T Consensus 91 pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 799999999 88877665545666775
No 212
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.77 E-value=8.9 Score=43.56 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=30.7
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCc-chhHHh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNP-LALQVL 147 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 147 (715)
...++.+.++.++..+...+.+-.....-+ .+....|++.++|-+ -|+..+
T Consensus 169 c~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 169 THHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 457888999988887777655432221111 234567788888866 344333
No 213
>CHL00176 ftsH cell division protein; Validated
Probab=85.68 E-value=5 Score=46.12 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|.|||+|| ++....
T Consensus 224 PpGTGKT~LAralA~e~ 240 (638)
T CHL00176 224 PPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5899999999 888764
No 214
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.66 E-value=6.5 Score=42.13 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENH-CPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~-~~~~~~~~~~~i~~~c~glPL 142 (715)
.+++.++++.++....+...+-.... .+ .+....++++++|.+-
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHH
Confidence 47888999988888877776643221 12 2456777777877553
No 215
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.63 E-value=3.2 Score=48.89 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+|||++| .+..++.
T Consensus 211 ~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 211 EPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 8888753
No 216
>CHL00181 cbbX CbbX; Provisional
Probab=85.38 E-value=11 Score=38.81 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+||||+| .+++..
T Consensus 67 ~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 67 SPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 4799999999 887753
No 217
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.20 E-value=1.6 Score=47.29 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=26.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPL 142 (715)
..++++++++++..+.+...+-... ... .+.+..+++.++|.+-
T Consensus 179 ~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr 223 (397)
T PRK14955 179 QRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMR 223 (397)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 3577788888777766665442111 111 2456778888888664
No 218
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=85.13 E-value=2 Score=47.67 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=42.3
Q ss_pred CCCcHHHHH--HHHHHhhccCCce-EEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-------------c
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGK-YFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-------------K 61 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~-~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-------------~ 61 (715)
.|+|||||| .+.++. .-+.. +++. +.+..+ + +.++.+++...-..... ...++ .
T Consensus 171 ~g~GKt~lal~~i~~~~--~~dv~~V~~~-IGer~~--e-v~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~t 244 (502)
T PRK09281 171 RQTGKTAIAIDTIINQK--GKDVICIYVA-IGQKAS--T-VAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCA 244 (502)
T ss_pred CCCCchHHHHHHHHHhc--CCCeEEEEEE-ecCChH--H-HHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 599999997 666654 33454 3443 554432 2 55566555543211110 11111 1
Q ss_pred chHHHHHHhcCCeEEEEEeCccCChHH
Q 005085 62 IPQYIRDRLQRMKVFIVLDDVNKDKTI 88 (715)
Q Consensus 62 ~~~~l~~~L~~kr~LlVLDDv~r~~~v 88 (715)
.++.++. +++.+|+|+||+.|--..
T Consensus 245 iAEyfrd--~G~~VLli~DdlTr~A~A 269 (502)
T PRK09281 245 MGEYFMD--NGKDALIVYDDLSKQAVA 269 (502)
T ss_pred HHHHHHH--cCCCEEEEecCchHHHHH
Confidence 2333333 389999999999854333
No 219
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=84.93 E-value=6.8 Score=44.70 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=31.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
..++++.++.++..+.+.+.+-.....-+ .+....|++.++|-+.-+
T Consensus 184 q~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 184 QRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDG 230 (598)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 57889999999888887776532221111 245677888888877444
No 220
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=84.63 E-value=1.5 Score=42.85 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=42.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-------------cch
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-------------KIP 63 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-------------~~~ 63 (715)
+|+|||+|+ .+.+.... +..+++. +.+..+ + +.++.+++...-..+.. ...++ ..+
T Consensus 24 ~g~GKt~Ll~~i~~~~~~--d~~V~~~-iGer~~--E-v~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~A 97 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQDA--DVVVYAL-IGERGR--E-VTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIA 97 (215)
T ss_dssp TTSSHHHHHHHHHHHCTT--TEEEEEE-ESECHH--H-HHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhcccc--cceeeee-ccccch--h-HHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhh
Confidence 699999999 88776542 2335554 444322 2 55666666433111110 11111 123
Q ss_pred HHHHHHhcCCeEEEEEeCccCCh
Q 005085 64 QYIRDRLQRMKVFIVLDDVNKDK 86 (715)
Q Consensus 64 ~~l~~~L~~kr~LlVLDDv~r~~ 86 (715)
+.+++ ++|.+|+++||+.|--
T Consensus 98 Eyfrd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 98 EYFRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHH--TTSEEEEEEETHHHHH
T ss_pred HHHhh--cCCceeehhhhhHHHH
Confidence 33333 6999999999997443
No 221
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=84.54 E-value=0.64 Score=41.07 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++.++.
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 4799999999 888774
No 222
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.54 E-value=0.048 Score=52.44 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=58.9
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 521 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 521 (715)
+......+.||++.|+. ..+-..+.-++.|..|+++.|. ..-.|+.++.+..++.+++..| ..+..|.+.+.+++++
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 45566667777777652 2333445556667777777653 4556777777777777777777 7777787888888887
Q ss_pred EEEecCCCCC
Q 005085 522 QLKLTGCTKL 531 (715)
Q Consensus 522 ~L~Ls~n~~~ 531 (715)
++++.++++.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777644
No 223
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=84.48 E-value=1.1 Score=46.89 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=20.0
Q ss_pred CCCCcHHHHH-HHHHHhhccC------CceEEEEecchhh
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF------EGKYFMANVREES 33 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F------~~~~wv~~v~~~~ 33 (715)
.+|+||||+| ++.-...... ...+||. .-+.|
T Consensus 110 ~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~-te~~f 148 (317)
T PRK04301 110 EFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID-TEGTF 148 (317)
T ss_pred CCCCCHhHHHHHHHHHhccccccCCCCceEEEEe-CCCCc
Confidence 4799999999 6654322111 3678887 44433
No 224
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.32 E-value=5.6 Score=45.54 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=29.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
..++++.++.++..+.+.+.+-......+ .+....+++.++|.+-.+
T Consensus 172 ~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 172 QRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDA 218 (585)
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 46777888888777777665533221111 245677788888877544
No 225
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.28 E-value=0.74 Score=46.71 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.8
Q ss_pred CCCcHHHHH-HHHHHhhccC-CceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKF-EGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F-~~~~wv~ 27 (715)
||+||||+| .+...++.+- ..+..|.
T Consensus 12 GGvGKTT~a~nLa~~La~~~~~kVLliD 39 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRGGKKVLLID 39 (259)
T ss_pred CCccHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 999999999 8888776444 4444444
No 226
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.14 E-value=11 Score=43.62 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=28.8
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+++++++.++..+.+...+-... ... .+.++.+++.++|-+-
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR 214 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLR 214 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 5788999999988877776442211 111 2446778888888653
No 227
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=83.91 E-value=3 Score=45.90 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=42.4
Q ss_pred CCCcHHHHH--HHHHHhhccCCc-eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHH
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEG-KYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQY 65 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~-~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~ 65 (715)
.|+|||||| .+.++. .-+. ++++. +.+... + +.++.+++...-..... ...++ -..-.
T Consensus 171 ~g~GKT~Lal~~I~~q~--~~dv~~V~~~-IGeR~r--e-v~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~a 244 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQK--GRNVLCIYCA-IGQRAS--A-VAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATS 244 (497)
T ss_pred CCCCHHHHHHHHHHHhc--CCCcEEEEEE-eccCcH--H-HHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 399999997 788864 3354 34443 555432 2 55566555543211110 01111 01222
Q ss_pred HHHHh--cCCeEEEEEeCccCC
Q 005085 66 IRDRL--QRMKVFIVLDDVNKD 85 (715)
Q Consensus 66 l~~~L--~~kr~LlVLDDv~r~ 85 (715)
+.++. ++|.+|+|+||+.|-
T Consensus 245 iAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 245 IGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHhCCCCEEEEEcChhHH
Confidence 44444 589999999999843
No 228
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.83 E-value=0.039 Score=60.76 Aligned_cols=175 Identities=19% Similarity=0.212 Sum_probs=99.3
Q ss_pred CcceEEEEecCCCCcc----cCchhhcccccceEeccCcccccc----cCcccCCCcccEEEcCCCCCCCcCCCCCCCCc
Q 005085 355 PNLERMNLRNCTGLAH----IPSYVQNFNKLGNMIMAGCESLRC----FPQNIHFISSIKIDCYKCVNLKEFPRISGNVV 426 (715)
Q Consensus 355 ~~L~~L~L~~n~~l~~----~p~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~ 426 (715)
..+..|.|.+|..... +-..+.....|..|++++|..... +-..+... -..++
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~-------------------~~~l~ 147 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP-------------------QCLLQ 147 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc-------------------hHHHH
Confidence 3478888888754433 223455677888888888754311 00111111 01122
Q ss_pred EEeccCCCCc-----ccCcccCCCCCCCEEEcccccccc----ccccc----ccCCCCccEeecCCCcCCCc----cchh
Q 005085 427 ELNLMCTPIE-----EVPLSIECLPNLEILEMSFCYSLK----RLSTS----ICKLKYLSSLDLSYCINLES----FPEI 489 (715)
Q Consensus 427 ~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~n~~~~----~lp~~----~~~l~~L~~L~L~~n~~~~~----~p~~ 489 (715)
+|++..+.++ .+...+.....|+.++++.|.+.. .++.. +....++++|.+++|..... +...
T Consensus 148 ~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 148 TLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred HHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 3333333333 233345556677777777765421 11222 33467788888888755421 1223
Q ss_pred ccCCcc-cccccccccccccc-----cchhhcCC-CCCCEEEecCCCCCCC-----------CCCcCeEEecCccCCC
Q 005085 490 LEKMEL-LEEINLEEASNIKE-----LPSSIENL-EGLKQLKLTGCTKLGS-----------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 490 ~~~l~~-L~~L~L~~n~~~~~-----lp~~l~~l-~~L~~L~Ls~n~~~~~-----------lp~L~~L~l~~n~L~~ 549 (715)
+...++ ++.|++..| .+++ +...+..+ ..+++++++.|++... ++.++.|.+++|++..
T Consensus 228 l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 445555 677888887 4432 33445555 6778888888887764 5678888888888665
No 229
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.76 E-value=1.8 Score=39.72 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.1
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
+|.||||+| .+.....
T Consensus 8 ~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 8 SGSGKSTIARALEEKLF 24 (149)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 799999999 7777653
No 230
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.41 E-value=14 Score=41.09 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=24.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+.+.+++.++..+.+.+.+-... ... .+....+++.++|.+-
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr 215 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMR 215 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 3677777777777666665442211 111 2345566667777554
No 231
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=83.34 E-value=1.1 Score=42.90 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=18.9
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.||+||||+| .+...+..+=..++-+.
T Consensus 7 kGG~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCCccHHHHHHHHHhccccccccccccc
Confidence 4999999999 88877666444444444
No 232
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.25 E-value=0.75 Score=27.94 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=16.4
Q ss_pred CCCcCeEEecCccCCCCCCCCCC
Q 005085 534 LPETKNWMHPYCKHYPITRVKDY 556 (715)
Q Consensus 534 lp~L~~L~l~~n~L~~~~lp~~l 556 (715)
+++|+.|+|++|.|+. +|...
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSS--LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHH
Confidence 4678888888888887 77654
No 233
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.25 E-value=0.75 Score=27.94 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=16.4
Q ss_pred CCCcCeEEecCccCCCCCCCCCC
Q 005085 534 LPETKNWMHPYCKHYPITRVKDY 556 (715)
Q Consensus 534 lp~L~~L~l~~n~L~~~~lp~~l 556 (715)
+++|+.|+|++|.|+. +|...
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSS--LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHH
Confidence 4678888888888887 77654
No 234
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.99 E-value=4.1 Score=43.40 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=38.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCC--ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhcCCeEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE--GKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQRMKVF 76 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~--~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~~kr~L 76 (715)
+.|+||||++ ++..+....+. .+..+. .+.+. .+ ..+-++......+.......+. ++.. ....+.++ =+
T Consensus 145 ptGvGKTTtiakLA~~~~~~~G~~~V~lit--~D~~R-~g-a~EqL~~~a~~~gv~~~~~~~~~~l~~-~l~~l~~~-Dl 218 (374)
T PRK14722 145 PTGVGKTTTTAKLAARCVMRFGASKVALLT--TDSYR-IG-GHEQLRIFGKILGVPVHAVKDGGDLQL-ALAELRNK-HM 218 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEe--ccccc-cc-HHHHHHHHHHHcCCceEecCCcccHHH-HHHHhcCC-CE
Confidence 4799999999 88876544443 344443 22232 12 2222333333333322222222 3333 33445555 45
Q ss_pred EEEeCccC
Q 005085 77 IVLDDVNK 84 (715)
Q Consensus 77 lVLDDv~r 84 (715)
|++|...+
T Consensus 219 VLIDTaG~ 226 (374)
T PRK14722 219 VLIDTIGM 226 (374)
T ss_pred EEEcCCCC
Confidence 55899983
No 235
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=82.95 E-value=5.1 Score=40.84 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=26.0
Q ss_pred CCCCcHHHHH-HHHHHhhcc-CCceEEEEecchhhhcCCcHHHHHHHHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQK-FEGKYFMANVREESEKCGVLVHLRNQVLSKV 50 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~-F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~ 50 (715)
.+|+||||+| ++......+ =..++|++ .-.. ..++.+.+....
T Consensus 38 ~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~E~~------~~~~~~r~~~~~ 82 (271)
T cd01122 38 GTGVGKTTFLREYALDLITQHGVRVGTIS-LEEP------VVRTARRLLGQY 82 (271)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCceEEEEE-cccC------HHHHHHHHHHHH
Confidence 3799999999 776655433 34566776 3221 345555555443
No 236
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=82.75 E-value=2.4 Score=44.20 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=20.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
++|+|||||| ++.-.....-..++||.
T Consensus 63 p~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 63 PESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4799999999 76665555556777886
No 237
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=82.75 E-value=4.6 Score=42.80 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCC--CCCCcchHHHHHHhc-CCeEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFD--IGTQKIPQYIRDRLQ-RMKVFI 77 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~~l~~~L~-~kr~Ll 77 (715)
+||||+||. ++..++.+.- .+.+|+ .+.+ +..+ +-.+..++....+ .-.+.-.+.|.+.+. .|.-++
T Consensus 102 PGIGKSTLLLQva~~lA~~~-~vLYVs--GEES-----~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lv 172 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG-KVLYVS--GEES-----LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLV 172 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC-----HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEE
Confidence 699999999 9999887666 666665 2332 2221 1222333322222 222233455555564 466788
Q ss_pred EEeCcc
Q 005085 78 VLDDVN 83 (715)
Q Consensus 78 VLDDv~ 83 (715)
|+|-+-
T Consensus 173 VIDSIQ 178 (456)
T COG1066 173 VIDSIQ 178 (456)
T ss_pred EEeccc
Confidence 888664
No 238
>PRK14528 adenylate kinase; Provisional
Probab=82.30 E-value=17 Score=34.58 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=17.2
Q ss_pred hHHHHHHhcC--CeEEEEEeCccCChHHHH
Q 005085 63 PQYIRDRLQR--MKVFIVLDDVNKDKTILE 90 (715)
Q Consensus 63 ~~~l~~~L~~--kr~LlVLDDv~r~~~v~~ 90 (715)
...+.+.++. ....+|+|+..|+..-+.
T Consensus 66 ~~~~~~~l~~~~~~~g~viDG~Pr~~~qa~ 95 (186)
T PRK14528 66 IGIIKDRIREADCKNGFLLDGFPRTVEQAD 95 (186)
T ss_pred HHHHHHHHhCcCccCcEEEeCCCCCHHHHH
Confidence 3455666643 234689999887654443
No 239
>PTZ00185 ATPase alpha subunit; Provisional
Probab=82.30 E-value=4.6 Score=44.42 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=40.6
Q ss_pred CCCcHHHHH--HHHHHhh-------ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-----CCCCCc------
Q 005085 2 GGIGKTTIG--VVFNQFS-------QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-----DIGTQK------ 61 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~-------~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~~------ 61 (715)
.|+|||||| .+.++.. ++-+.++++. +.+... + +.++.+.+-+.-.-+.. ..++..
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyva-IGeR~r--E-V~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~A 273 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVS-IGQRCS--N-VARIHRLLRSYGALRYTTVMAATAAEPAGLQYLA 273 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEE-eccchH--H-HHHHHHHHHhcCCccceEEEEECCCCCHHHHHHH
Confidence 589999997 6777641 2334455554 655432 2 44444333222101100 011100
Q ss_pred --chHHHHHHh--cCCeEEEEEeCccC
Q 005085 62 --IPQYIRDRL--QRMKVFIVLDDVNK 84 (715)
Q Consensus 62 --~~~~l~~~L--~~kr~LlVLDDv~r 84 (715)
..-.+.+++ +++.+|+|+||+.|
T Consensus 274 py~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 274 PYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 122233333 58999999999973
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=82.28 E-value=2.8 Score=43.62 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=19.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++.......=..++|+.
T Consensus 63 ~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 63 PESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4799999999 76665555555667886
No 241
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=4.4 Score=45.38 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=25.9
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhhcCCCC-CChhHHHHHH
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCAFKENH-CPEDLLKHSE 131 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~af~~~~-~~~~~~~~~~ 131 (715)
-+..+.++.-+.+--.++|+.++=+-.. +.-+++++++
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 4678888888888889999998843222 2235555554
No 242
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=82.27 E-value=2.7 Score=46.14 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=44.2
Q ss_pred CCCcHHHHH-HHHHHhhc-cCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCC------C-----CCCCC--------
Q 005085 2 GGIGKTTIG-VVFNQFSQ-KFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGEN------F-----DIGTQ-------- 60 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~-~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~------~-----~~~~~-------- 60 (715)
.|+|||||+ .+...+.+ +=+.++++- +.+..+ + +.++.+++...-.... . ...++
T Consensus 170 ~GvGKs~L~~~~~~~~~~~~~dv~V~~l-IGERgr--E-v~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a 245 (494)
T CHL00060 170 AGVGKTVLIMELINNIAKAHGGVSVFGG-VGERTR--E-GNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRV 245 (494)
T ss_pred CCCChhHHHHHHHHHHHHhcCCeEEEEE-eccCch--H-HHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHH
Confidence 699999999 66665332 225555554 655432 3 5666666655211100 0 11111
Q ss_pred -cchHHHHHHhc--CC-eEEEEEeCccCC
Q 005085 61 -KIPQYIRDRLQ--RM-KVFIVLDDVNKD 85 (715)
Q Consensus 61 -~~~~~l~~~L~--~k-r~LlVLDDv~r~ 85 (715)
..+-.+.++++ ++ .+|+++||+.|-
T Consensus 246 ~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 246 GLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11333666663 44 999999999844
No 243
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=82.24 E-value=3.4 Score=45.81 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCcHHHHH--HHHHHhhccCCce-EEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-c--------chHH
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGK-YFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-K--------IPQY 65 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~-~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~--------~~~~ 65 (715)
.|+|||||| .+.++. .-+.. +++. +.+..+ + +.++.+++...-..... ...++ . ..-.
T Consensus 170 ~g~GKt~Lal~~i~~~~--~~dv~~V~~~-IGer~r--e-v~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~a 243 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQK--DSDVYCVYVA-IGQKAS--T-VAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCT 243 (501)
T ss_pred CCCCccHHHHHHHHhhc--CCCeEEEEEE-ccCChH--H-HHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHH
Confidence 499999997 677763 34554 4443 555432 2 56666666553211110 01111 0 1122
Q ss_pred HHHHh--cCCeEEEEEeCccCChHHHH
Q 005085 66 IRDRL--QRMKVFIVLDDVNKDKTILE 90 (715)
Q Consensus 66 l~~~L--~~kr~LlVLDDv~r~~~v~~ 90 (715)
+.++. +||.+|+|+||+.|--+..+
T Consensus 244 iAEyfrd~G~~VLlv~Ddltr~A~A~R 270 (501)
T TIGR00962 244 MAEYFRDNGKHALIIYDDLSKHAVAYR 270 (501)
T ss_pred HHHHHHHcCCCEEEEecchHHHHHHHH
Confidence 33333 48999999999985443333
No 244
>PRK00889 adenylylsulfate kinase; Provisional
Probab=82.04 E-value=1.6 Score=41.15 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=14.7
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+||||+| ++......
T Consensus 12 ~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 12 LSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999 88887643
No 245
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=81.98 E-value=3.2 Score=45.18 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=45.8
Q ss_pred CCCcHHHHH-HHHHHhh-ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHH
Q 005085 2 GGIGKTTIG-VVFNQFS-QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYI 66 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~-~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l 66 (715)
.|+|||+|+ .+....+ .+-+.++++- +.+..+ + +.++.+++...-..... ...++ ..+-.+
T Consensus 147 ~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR~r--E-v~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~ti 222 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGERCR--E-GEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTM 222 (449)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEEE-eccCcH--H-HHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 699999999 7666543 3346667664 655432 2 55666665543211110 11111 123345
Q ss_pred HHHhc---CCeEEEEEeCccCC
Q 005085 67 RDRLQ---RMKVFIVLDDVNKD 85 (715)
Q Consensus 67 ~~~L~---~kr~LlVLDDv~r~ 85 (715)
.++++ ++.+|+|+||+.|-
T Consensus 223 AEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 223 AEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHhcCCceEEEecChHHH
Confidence 55653 69999999999743
No 246
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=81.96 E-value=0.6 Score=41.17 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=14.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCc
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEG 22 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~ 22 (715)
+|+||||+| ++...+...|..
T Consensus 8 PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 8 PGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp --HHHHHHHHHHHHHTT--EEE
T ss_pred CccHHHHHHHHHHHHcCCceeE
Confidence 799999999 888887777754
No 247
>CHL00195 ycf46 Ycf46; Provisional
Probab=81.72 E-value=13 Score=41.46 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.0
Q ss_pred CcCcEEEcCCCCHHHHHHHHHhhhcC
Q 005085 93 GTQRIYEVEGLNCNEVLRLFSSCAFK 118 (715)
Q Consensus 93 ~~~~~~~l~~L~~~es~~LF~~~af~ 118 (715)
.-+..+.++..+.++-.++|..+.-+
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 34678899999999999999887643
No 248
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=81.35 E-value=0.93 Score=38.92 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCCCcHHHHH-HHHHHhhccC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF 20 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F 20 (715)
.+|+|||+|| .+...+.+++
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 4799999999 8887665543
No 249
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=81.28 E-value=13 Score=44.86 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.+|+|||++| .+..++..
T Consensus 202 ~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 202 EPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4799999999 88877543
No 250
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.27 E-value=0.077 Score=51.06 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=53.1
Q ss_pred CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEec
Q 005085 351 PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNL 430 (715)
Q Consensus 351 ~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L 430 (715)
+..+.....||++.| .+..+...++.++.|..|+++.| .+..+|..++.+..+. .+++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~--------------------~~~~ 95 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETV--------------------NAAS 95 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHH--------------------HHHh
Confidence 555566666666665 33444455666666777777654 3444555444333332 4555
Q ss_pred cCCCCcccCcccCCCCCCCEEEccccccc
Q 005085 431 MCTPIEEVPLSIECLPNLEILEMSFCYSL 459 (715)
Q Consensus 431 ~~n~l~~lp~~~~~l~~L~~L~L~~n~~~ 459 (715)
..|..+..|.+++.+++++++++.++.+.
T Consensus 96 ~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 96 HKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hccchhhCCccccccCCcchhhhccCcch
Confidence 66666777777777778887777776643
No 251
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=81.26 E-value=2.9 Score=45.27 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=42.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||||+ .+...... +..+++ .+.+..+ + +.++.++++..-..... ...++ ..+-.+.
T Consensus 171 sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~r--E-v~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiA 244 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTTA--DVIVVG-LVGERGR--E-VKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIA 244 (444)
T ss_pred CCCChhHHHHHhccCCCC--CEEEEE-EEcCChH--H-HHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999 77754322 444443 3544432 2 45555554433111110 11111 1112234
Q ss_pred HHh--cCCeEEEEEeCccCChHH
Q 005085 68 DRL--QRMKVFIVLDDVNKDKTI 88 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~~~v 88 (715)
+++ +++.+|+++||+.|--+.
T Consensus 245 Eyfrd~G~~VLl~~DslTR~A~A 267 (444)
T PRK08972 245 EYFRDQGLNVLLLMDSLTRYAQA 267 (444)
T ss_pred HHHHHcCCCEEEEEcChHHHHHH
Confidence 444 589999999999854333
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=80.89 E-value=6.6 Score=46.42 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=17.5
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhh
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~a 116 (715)
.+..+.++..+.++-.++|..+.
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHh
Confidence 35678888888888888887654
No 253
>PRK03839 putative kinase; Provisional
Probab=80.77 E-value=0.99 Score=42.87 Aligned_cols=16 Identities=31% Similarity=0.656 Sum_probs=14.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|+|+||||+| ++.++.
T Consensus 8 ~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKL 24 (180)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 6899999999 888875
No 254
>PHA02518 ParA-like protein; Provisional
Probab=80.74 E-value=1.5 Score=42.62 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=13.2
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+...+..
T Consensus 10 GGvGKTT~a~~la~~la~ 27 (211)
T PHA02518 10 GGAGKTTVATNLASWLHA 27 (211)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999 76655443
No 255
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.67 E-value=3.2 Score=46.95 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhc--CCeEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQ--RMKVFI 77 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~Ll 77 (715)
++|+|||||| .|.++.- |. ++=| |.|+. .. ...+-+.|...+.... .|. ++..=+
T Consensus 334 ppGlGKTTLAHViAkqaG--Ys-VvEI-NASDe---Rt-~~~v~~kI~~avq~~s--------------~l~adsrP~CL 391 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAG--YS-VVEI-NASDE---RT-APMVKEKIENAVQNHS--------------VLDADSRPVCL 391 (877)
T ss_pred CCCCChhHHHHHHHHhcC--ce-EEEe-ccccc---cc-HHHHHHHHHHHHhhcc--------------ccccCCCcceE
Confidence 5899999999 6665411 11 1111 22222 22 4555555555444332 121 466678
Q ss_pred EEeCcc
Q 005085 78 VLDDVN 83 (715)
Q Consensus 78 VLDDv~ 83 (715)
|+|.++
T Consensus 392 ViDEID 397 (877)
T KOG1969|consen 392 VIDEID 397 (877)
T ss_pred EEeccc
Confidence 899998
No 256
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=80.66 E-value=13 Score=38.77 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=32.5
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
...+.+.+++.+++.+.+.+.. .. +..+..++..++|.|+.+..+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 3578899999999988776531 11 1226678999999998765544
No 257
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=80.48 E-value=3.8 Score=45.26 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-c--------chHHH
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-K--------IPQYI 66 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~--------~~~~l 66 (715)
.|+|||||| .+.++. .-+..|-+..+.+... + +.++.+++...-..... ...++ . ..-.+
T Consensus 171 ~g~GKt~Lal~~i~~~~--~~dv~~V~~~IGer~r--e-v~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~ai 245 (502)
T PRK13343 171 RQTGKTAIAIDAIINQK--DSDVICVYVAIGQKAS--A-VARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAI 245 (502)
T ss_pred CCCCccHHHHHHHHhhc--CCCEEEEEEEeccChH--H-HHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHH
Confidence 599999997 677653 3354433333555432 2 55666655443211110 00111 0 11123
Q ss_pred HHHh--cCCeEEEEEeCccCC
Q 005085 67 RDRL--QRMKVFIVLDDVNKD 85 (715)
Q Consensus 67 ~~~L--~~kr~LlVLDDv~r~ 85 (715)
.++. ++|.+|+|+||+.|-
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 246 AEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHhCCCCEEEEecchHHH
Confidence 3443 589999999999843
No 258
>PRK11823 DNA repair protein RadA; Provisional
Probab=80.41 E-value=4.1 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+|+|||||+ ++......+=...+|++
T Consensus 89 pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 799999999 88776554434567776
No 259
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=80.26 E-value=4.3 Score=44.50 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCCcHHHHH-HHHHHhh--ccCC--ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cch
Q 005085 2 GGIGKTTIG-VVFNQFS--QKFE--GKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIP 63 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~--~~F~--~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~ 63 (715)
.|+|||||+ .+.++.. ..+. .++++- +.+..+ + +.++.+++...-..... ...++ -..
T Consensus 150 ~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~-iGERgr--E-v~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a 225 (458)
T TIGR01041 150 SGLPHNELAAQIARQATVRGEESEFAVVFAA-MGITYE--E-ANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMA 225 (458)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCceEEEEEE-ccccch--H-HHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 599999999 8877532 1222 233332 444332 3 55666666543211110 11111 112
Q ss_pred HHHHHHhc---CCeEEEEEeCccCC
Q 005085 64 QYIRDRLQ---RMKVFIVLDDVNKD 85 (715)
Q Consensus 64 ~~l~~~L~---~kr~LlVLDDv~r~ 85 (715)
..+.++.+ ++++|+++||+.|-
T Consensus 226 ~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 226 LTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHccCCcEEEEEcChhHH
Confidence 23555554 78999999999843
No 260
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=79.58 E-value=4.5 Score=43.96 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||||+ .+.+.... +..+++- +.+..+ + +.+..++.+..-..... ...++ ..+-.+.
T Consensus 167 sG~GKTtLL~~I~~~~~~--d~~v~~~-iGER~r--E-v~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiA 240 (442)
T PRK08927 167 SGVGKSVLLSMLARNADA--DVSVIGL-IGERGR--E-VQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIA 240 (442)
T ss_pred CCCCHHHHHHHHHhccCC--CEEEEEE-EecCcH--H-HHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999 88875433 3444332 444322 2 44444444332111100 11111 1122244
Q ss_pred HHh--cCCeEEEEEeCccCC
Q 005085 68 DRL--QRMKVFIVLDDVNKD 85 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~ 85 (715)
+++ ++|.+|+++||+.|-
T Consensus 241 Eyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 241 EYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHCCCcEEEEEeCcHHH
Confidence 444 589999999999844
No 261
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.45 E-value=1.8 Score=45.14 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=17.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.|||||||+| +..-..........-|+
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4999999999 65444444444444443
No 262
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=79.44 E-value=1.8 Score=37.02 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=19.1
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...+...+++-
T Consensus 9 gg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 9 GGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 899999999 88877766644444443
No 263
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=79.43 E-value=1.3 Score=37.65 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.5
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+.....
T Consensus 9 gG~Gkst~~~~la~~~~ 25 (104)
T cd02042 9 GGVGKTTTAVNLAAALA 25 (104)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 899999999 6665443
No 264
>PRK09354 recA recombinase A; Provisional
Probab=79.41 E-value=3.7 Score=43.18 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=20.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+|||||| ++.......=...+||.
T Consensus 68 ~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 68 PESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4799999999 76655545556778886
No 265
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=79.32 E-value=5.9 Score=40.70 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+||||++ .+......
T Consensus 202 ptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999 87776543
No 266
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.22 E-value=22 Score=40.97 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=28.4
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchhH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLALQ 145 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai~ 145 (715)
..+++..++.++..+.+.+.+-... ... .+....+++.++|.+..+.
T Consensus 173 ~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 173 QRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 4677778888877776665543221 111 1346777888888765443
No 267
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=79.21 E-value=1.9 Score=40.65 Aligned_cols=26 Identities=27% Similarity=0.246 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
.||+||||+| .+....+++=..++-|
T Consensus 8 kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4999999999 7777655443334444
No 268
>PRK08233 hypothetical protein; Provisional
Probab=79.19 E-value=1.2 Score=42.26 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+||||+| ++....
T Consensus 11 ~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 11 VSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 4799999999 888764
No 269
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.81 E-value=7.2 Score=40.58 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=40.2
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc----chhHHhhhccc---CC---ChhHHHHH
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP----LALQVLGSSFY---GK---SKPDWVNA 162 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP----Lai~~~g~~L~---~k---~~~~w~~~ 162 (715)
-+..++++.-+.+--.++|.-|+-+=. ...-++ +.+++.+.|.- .|+.+=|++++ .+ +.++...+
T Consensus 313 ~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~A 388 (406)
T COG1222 313 FDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKA 388 (406)
T ss_pred ccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHH
Confidence 467788886666666778887764422 233344 44555666654 45555566554 12 55666666
Q ss_pred HHHh
Q 005085 163 LNNL 166 (715)
Q Consensus 163 l~~l 166 (715)
.+..
T Consensus 389 v~KV 392 (406)
T COG1222 389 VEKV 392 (406)
T ss_pred HHHH
Confidence 6554
No 270
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=78.56 E-value=2.1 Score=42.00 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=19.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||.||||++ .+...+..+=..+.-+.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 999999999 88887665555555554
No 271
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=78.49 E-value=5.7 Score=37.32 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.4
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|+||||++ .+....++.
T Consensus 8 ~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 5899999999 887776555
No 272
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=78.32 E-value=7.3 Score=36.55 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcC--CeEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQR--MKVFIV 78 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlV 78 (715)
.|.||||+| ++... .-...+++. ..+.+ | .++++.|.........+....+....+.+.+.. +.-.|+
T Consensus 8 ~~sGKS~~a~~~~~~---~~~~~~y~a-t~~~~---d--~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VL 78 (169)
T cd00544 8 ARSGKSRFAERLAAE---LGGPVTYIA-TAEAF---D--DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVL 78 (169)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEE-ccCcC---C--HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEE
Confidence 689999999 65433 234556665 44433 2 345555544333333232222455566666632 233688
Q ss_pred EeCcc
Q 005085 79 LDDVN 83 (715)
Q Consensus 79 LDDv~ 83 (715)
+|.+.
T Consensus 79 IDclt 83 (169)
T cd00544 79 IDCLT 83 (169)
T ss_pred EEcHh
Confidence 88875
No 273
>PRK00625 shikimate kinase; Provisional
Probab=78.11 E-value=1.4 Score=41.49 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|+|+||||+| .+.++.
T Consensus 8 ~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 8 LPTVGKTSFGKALAKFL 24 (173)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 7899999999 777654
No 274
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=77.91 E-value=4 Score=44.96 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=18.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+|+|||||+ ++..+..+.=...++++
T Consensus 103 pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 699999999 77665544334566776
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=77.78 E-value=16 Score=39.85 Aligned_cols=146 Identities=13% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC---C-cchHHHHHHhcCCeE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT---Q-KIPQYIRDRLQRMKV 75 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~---~-~~~~~l~~~L~~kr~ 75 (715)
.+|+||||.| .+....+.+...++.+. -.+.+. .. ..+-.+......+........ . +......+....+.+
T Consensus 107 ~~GsGKTTtaakLA~~l~~~~g~kV~lV-~~D~~R-~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~ 183 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLKKKQGKKVLLV-ACDLYR-PA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGF 183 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEEEE-eccccc-hH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCC
Confidence 4799999999 77766543223333332 112221 11 122122223332222111111 1 222333334444555
Q ss_pred -EEEEeCccC---ChHHHHHh-------Cc-CcEEEcCCCCHHHHHHH---HHhhhc------CCCCCChhHHHHHHHHH
Q 005085 76 -FIVLDDVNK---DKTILERY-------GT-QRIYEVEGLNCNEVLRL---FSSCAF------KENHCPEDLLKHSETAV 134 (715)
Q Consensus 76 -LlVLDDv~r---~~~v~~~~-------~~-~~~~~l~~L~~~es~~L---F~~~af------~~~~~~~~~~~~~~~i~ 134 (715)
+||+|-..| +......+ .. ...+-++.....++.+. |...+- ...+. ..-...+..++
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~-~~~~G~~lsi~ 262 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDG-DARGGAALSVR 262 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccC-cccccHHHHHH
Confidence 788888874 33333322 22 23455666666676654 332221 11110 11122344555
Q ss_pred HHhCCCcchhHHhhhcc
Q 005085 135 HYAKGNPLALQVLGSSF 151 (715)
Q Consensus 135 ~~c~glPLai~~~g~~L 151 (715)
... |.|+.-...|..+
T Consensus 263 ~~~-~~PI~fi~~Ge~i 278 (428)
T TIGR00959 263 SVT-GKPIKFIGVGEKI 278 (428)
T ss_pred HHH-CcCEEEEeCCCCh
Confidence 544 6888887777655
No 276
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.56 E-value=4.2 Score=38.62 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=18.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++.....+.=..++|++
T Consensus 7 ~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 7 GPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4799999999 66554333335567776
No 277
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=77.44 E-value=4 Score=37.68 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKV 50 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~ 50 (715)
-|.||||+| ++.+= |.. |-..=+....... -.++.+.++..+
T Consensus 8 iGCGKTTva~aL~~L----Fg~--wgHvQnDnI~~k~-~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSNL----FGE--WGHVQNDNITGKR-KPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHHH----cCC--CCccccCCCCCCC-HHHHHHHHHHHH
Confidence 599999999 77654 333 3331222222223 556667777666
No 278
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=77.44 E-value=2.4 Score=34.86 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
+|+||||+| .+....++
T Consensus 8 ~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 8 GGVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999 77776554
No 279
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=77.42 E-value=2.2 Score=44.32 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=13.0
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
|||||||+| +..-....+
T Consensus 10 GGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARR 28 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHhhC
Confidence 999999999 555444443
No 280
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=77.24 E-value=1.9 Score=44.18 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=13.5
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
|||||||.| .+.....+
T Consensus 11 GGVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 11 GGIGKSTTTQNTAAAMAY 28 (275)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 999999999 76665553
No 281
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=77.02 E-value=29 Score=41.34 Aligned_cols=79 Identities=4% Similarity=-0.038 Sum_probs=41.4
Q ss_pred cchHHHHHHhcC--CeEEEEEeCccCChHHHHHh-CcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHh
Q 005085 61 KIPQYIRDRLQR--MKVFIVLDDVNKDKTILERY-GTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYA 137 (715)
Q Consensus 61 ~~~~~l~~~L~~--kr~LlVLDDv~r~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c 137 (715)
...+.|.+.|+. ....+||-- .+...+.... .....|++..++.++..+.+.+..-...... -.+....|++.+
T Consensus 135 ~a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~s 211 (824)
T PRK07764 135 QGFNALLKIVEEPPEHLKFIFAT-TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAG 211 (824)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEe-CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHc
Confidence 334556666653 333333311 1222344332 2346889999999888877765432111111 123456788888
Q ss_pred CCCcc
Q 005085 138 KGNPL 142 (715)
Q Consensus 138 ~glPL 142 (715)
+|.+.
T Consensus 212 gGdlR 216 (824)
T PRK07764 212 GGSVR 216 (824)
T ss_pred CCCHH
Confidence 88773
No 282
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=77.00 E-value=2.3 Score=42.21 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=12.8
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+.....
T Consensus 11 GGvGKTT~a~nLA~~la 27 (231)
T PRK13849 11 GGAGKTTALMGLCAALA 27 (231)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 999999999 6665544
No 283
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=76.94 E-value=1.7 Score=41.80 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.+|+||||+| ++...+.+
T Consensus 7 ~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp STTSSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhCc
Confidence 4799999999 99887664
No 284
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=76.82 E-value=3.9 Score=41.44 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecch
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVRE 31 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~ 31 (715)
+|+|||++| +.-.+..++.+.++||+ ..+
T Consensus 32 pGsGKT~f~~qfl~~~~~~ge~vlyvs-~~e 61 (260)
T COG0467 32 PGTGKTIFALQFLYEGAREGEPVLYVS-TEE 61 (260)
T ss_pred CCCcHHHHHHHHHHHHHhcCCcEEEEE-ecC
Confidence 799999999 76665555589999998 443
No 285
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=76.66 E-value=2.9 Score=39.61 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=40.1
Q ss_pred CCCCcHHHHH-HHHHHhh-ccCCceEEE-EecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcC--CeE
Q 005085 1 MGGIGKTTIG-VVFNQFS-QKFEGKYFM-ANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQR--MKV 75 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~-~~F~~~~wv-~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~ 75 (715)
.+|.||||+| ++.++.. .|.+..-|. .++... .. +..-++.++.+-. -+.+.-....+..++.. .+-
T Consensus 8 ~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~---t~-lg~~~k~~i~~g~----lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 8 PPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER---TE-LGEEIKKYIDKGE----LVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC---Ch-HHHHHHHHHHcCC----ccchHHHHHHHHHHHHhhcccC
Confidence 3799999999 8888631 233321111 111111 12 2333333322211 11221333555555543 222
Q ss_pred EEEEeCccCChHHHHH
Q 005085 76 FIVLDDVNKDKTILER 91 (715)
Q Consensus 76 LlVLDDv~r~~~v~~~ 91 (715)
-+|+|+.=|....++.
T Consensus 80 ~~I~dg~PR~~~qa~~ 95 (178)
T COG0563 80 GFILDGFPRTLCQARA 95 (178)
T ss_pred eEEEeCCCCcHHHHHH
Confidence 8999999876555543
No 286
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=76.66 E-value=1.5 Score=44.64 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
|||||||+| .+...
T Consensus 9 GGVGKTT~~~nLA~~ 23 (268)
T TIGR01281 9 GGIGKSTTSSNLSVA 23 (268)
T ss_pred CcCcHHHHHHHHHHH
Confidence 999999998 55543
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.55 E-value=13 Score=40.62 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=39.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHH---HHhcCCeE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIR---DRLQRMKV 75 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~---~~L~~kr~ 75 (715)
.+|+||||.| .+...++++-...+.|. .+.+. .. ..+-.+++...++......... +....++ +.+++. =
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g~kV~lV~--~D~~R-~a-a~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~-D 177 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKGLKVGLVA--ADTYR-PA-AYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA-D 177 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEec--CCCCC-HH-HHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcC-C
Confidence 4799999999 88877665422333333 12222 12 2333444444443322111111 2233333 333444 6
Q ss_pred EEEEeCccCC
Q 005085 76 FIVLDDVNKD 85 (715)
Q Consensus 76 LlVLDDv~r~ 85 (715)
+||+|..-|.
T Consensus 178 vVIIDTAGr~ 187 (437)
T PRK00771 178 VIIVDTAGRH 187 (437)
T ss_pred EEEEECCCcc
Confidence 7889999744
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=76.50 E-value=2.5 Score=42.18 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
|+|+||||++ .+.+-...+
T Consensus 4 paGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 7899999999 887755444
No 289
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.42 E-value=1.6 Score=26.56 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=15.2
Q ss_pred CCcCeEEecCccCCCCCCCC
Q 005085 535 PETKNWMHPYCKHYPITRVK 554 (715)
Q Consensus 535 p~L~~L~l~~n~L~~~~lp~ 554 (715)
++|+.|++++|.|++ +|+
T Consensus 2 ~~L~~L~vs~N~Lt~--LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS--LPE 19 (26)
T ss_pred cccceeecCCCcccc--Ccc
Confidence 578899999999888 886
No 290
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=76.32 E-value=1.8 Score=40.24 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=17.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCc
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEG 22 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~ 22 (715)
..|.||||+| +++.++..+-..
T Consensus 31 LSGsGKSTiA~ale~~L~~~G~~ 53 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAKGYH 53 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCe
Confidence 3699999999 999976655433
No 291
>CHL00095 clpC Clp protease ATP binding subunit
Probab=76.14 E-value=9.8 Score=45.55 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.0
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+|||++| .+..++.
T Consensus 208 ~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4899999999 8877654
No 292
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=76.05 E-value=2.5 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=13.3
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+.....+
T Consensus 9 gG~GKTt~a~~LA~~la~ 26 (169)
T cd02037 9 GGVGKSTVAVNLALALAK 26 (169)
T ss_pred CcCChhHHHHHHHHHHHH
Confidence 999999999 76665443
No 293
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.03 E-value=10 Score=44.61 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+|||++| .+..++
T Consensus 215 ppGvGKT~lae~la~~i 231 (758)
T PRK11034 215 ESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 4799999999 888764
No 294
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=76.03 E-value=3.4 Score=41.76 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=19.8
Q ss_pred CCCCcHHHHH-HHHHH--hhccC---C-ceEEEEecchhhh
Q 005085 1 MGGIGKTTIG-VVFNQ--FSQKF---E-GKYFMANVREESE 34 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~--~~~~F---~-~~~wv~~v~~~~~ 34 (715)
.+|+|||+|| ++.-. +.... + ..+|+. ....|.
T Consensus 46 ~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid-Te~~f~ 85 (256)
T PF08423_consen 46 ESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID-TEGTFS 85 (256)
T ss_dssp STTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE-SSSSS-
T ss_pred ecccccchHHHHHHHHhhcccccccCCCceEEEe-CCCCCC
Confidence 3799999999 77643 22222 2 367776 444443
No 295
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=75.92 E-value=1.8 Score=40.63 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
..|+|||||+ ++.+.+++
T Consensus 7 ~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 7 PPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhhc
Confidence 3799999999 88887653
No 296
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=75.79 E-value=7.1 Score=42.25 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=50.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCc-eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-CC-----CC-C-cchHHHHHHhc
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEG-KYFMANVREESEKCGVLVHLRNQVLSKVLGENF-DI-----GT-Q-KIPQYIRDRLQ 71 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~-~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-~~-----~~-~-~~~~~l~~~L~ 71 (715)
+|+||||+| .+...+....+. .++++. ... ...++..+++....-.. .+ .+ + +....-...++
T Consensus 205 P~mGKTafalnia~n~a~~~~~~v~iFSL------EM~-~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~ 277 (435)
T COG0305 205 PGMGKTALALNIALNAAADGRKPVAIFSL------EMS-EEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELS 277 (435)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCeEEEEc------cCC-HHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHh
Confidence 799999999 777766555554 344441 123 56677777766544332 11 11 1 34444555667
Q ss_pred CCeEEEEEeCcc---------CChHHHHHhCcC
Q 005085 72 RMKVFIVLDDVN---------KDKTILERYGTQ 95 (715)
Q Consensus 72 ~kr~LlVLDDv~---------r~~~v~~~~~~~ 95 (715)
... |.+||.. |.+++.+.++..
T Consensus 278 ~~~--i~IdD~~~~si~eir~~aRrlk~~~~l~ 308 (435)
T COG0305 278 EAP--IFIDDTPGLTITEIRSKARRLKLKHNLG 308 (435)
T ss_pred hCC--eeecCCCcCCHHHHHHHHHHHHHhcCcc
Confidence 777 7788887 455556555543
No 297
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=75.53 E-value=51 Score=32.84 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=13.5
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
.|.|||+++ ++.+....
T Consensus 61 rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 699999999 87776443
No 298
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=75.40 E-value=2.4 Score=41.19 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchh-hhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhcCCeEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREE-SEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQRMKVFIV 78 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~~kr~LlV 78 (715)
.|.||||+| .++..+... ++..+++. |-. + ....-..--....-...+.-+. -..+.|...+++++.-+=
T Consensus 17 SgSGKTTva~~l~~~~~~~-----~~~~I~~D~YYk-~-~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~P 89 (218)
T COG0572 17 SGSGKTTVAKELSEQLGVE-----KVVVISLDDYYK-D-QSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLP 89 (218)
T ss_pred CCCCHHHHHHHHHHHhCcC-----cceEeecccccc-c-hhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCccccc
Confidence 689999999 888887765 22222211 100 1 0110000000011111111122 345667777777772111
Q ss_pred EeCcc---CChHHHHHhCcCcEEEcC---CCCHHHHHHHHHhhhcCCCC
Q 005085 79 LDDVN---KDKTILERYGTQRIYEVE---GLNCNEVLRLFSSCAFKENH 121 (715)
Q Consensus 79 LDDv~---r~~~v~~~~~~~~~~~l~---~L~~~es~~LF~~~af~~~~ 121 (715)
.=|-- |..+.. .+....++-++ +|.++...+++.-++|-...
T Consensus 90 ~yd~~~~~r~~~~i-~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd 137 (218)
T COG0572 90 VYDYKTHTREPETI-KVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTD 137 (218)
T ss_pred ccchhcccccCCcc-ccCCCcEEEEecccccccHHHHhhcCEEEEEeCC
Confidence 11100 332111 12234444444 46778888888888886544
No 299
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.39 E-value=11 Score=37.45 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcC-CeEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQR-MKVFIV 78 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlV 78 (715)
++|.|||-+| +|.|+. ..+|+.++... -+|+-+.+.. ....++.+.-+. |-++|.
T Consensus 219 ppgtgktl~aravanrt-----dacfirvigse--------lvqkyvgega----------rmvrelf~martkkaciif 275 (435)
T KOG0729|consen 219 PPGTGKTLCARAVANRT-----DACFIRVIGSE--------LVQKYVGEGA----------RMVRELFEMARTKKACIIF 275 (435)
T ss_pred CCCCchhHHHHHHhccc-----CceEEeehhHH--------HHHHHhhhhH----------HHHHHHHHHhcccceEEEE
Confidence 5899999999 999873 44667643211 1222221110 233344444444 557888
Q ss_pred EeCcc
Q 005085 79 LDDVN 83 (715)
Q Consensus 79 LDDv~ 83 (715)
+|.|+
T Consensus 276 fdeid 280 (435)
T KOG0729|consen 276 FDEID 280 (435)
T ss_pred eeccc
Confidence 89887
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=75.36 E-value=5.2 Score=43.63 Aligned_cols=147 Identities=10% Similarity=0.141 Sum_probs=68.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCC---CCC-cchHHHHHHhcCCeE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDI---GTQ-KIPQYIRDRLQRMKV 75 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~---~~~-~~~~~l~~~L~~kr~ 75 (715)
.+|+||||.| .+....+.+....+.+. -.+.+.. . ..+=.+......+..-... .+. +......+..+.+.|
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~G~kV~lV-~~D~~R~-a-a~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKKKKKVLLV-AADVYRP-A-AIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGY 184 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcEEEE-Eccccch-H-HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCC
Confidence 4799999999 77766655533333332 1222221 1 1111222233332211111 111 333333333344445
Q ss_pred -EEEEeCccCC---hHHHHH-------hCc-CcEEEcCCCCHHHHHHH---HHhhhc------CCCCCChhHHHHHHHHH
Q 005085 76 -FIVLDDVNKD---KTILER-------YGT-QRIYEVEGLNCNEVLRL---FSSCAF------KENHCPEDLLKHSETAV 134 (715)
Q Consensus 76 -LlVLDDv~r~---~~v~~~-------~~~-~~~~~l~~L~~~es~~L---F~~~af------~~~~~~~~~~~~~~~i~ 134 (715)
+||+|-..|. ...... ... ...+-++.....++.+. |...+- ..-+.. .-...+-.++
T Consensus 185 DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~-~rgG~alsi~ 263 (433)
T PRK10867 185 DVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGD-ARGGAALSIR 263 (433)
T ss_pred CEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCc-ccccHHHHHH
Confidence 8888888743 333222 222 23455677776666543 443221 011111 1112344444
Q ss_pred HHhCCCcchhHHhhhccc
Q 005085 135 HYAKGNPLALQVLGSSFY 152 (715)
Q Consensus 135 ~~c~glPLai~~~g~~L~ 152 (715)
... |.|+.....|..+.
T Consensus 264 ~~~-~~PI~fig~Ge~v~ 280 (433)
T PRK10867 264 AVT-GKPIKFIGTGEKLD 280 (433)
T ss_pred HHH-CcCEEEEeCCCccc
Confidence 444 79988888886653
No 301
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=75.32 E-value=1.8 Score=44.24 Aligned_cols=16 Identities=44% Similarity=0.733 Sum_probs=12.5
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
|||||||+| .+...+.
T Consensus 11 GGVGKTT~~~nLA~~la 27 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFA 27 (270)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 999999998 6665443
No 302
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=75.22 E-value=2.7 Score=42.82 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=12.8
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
|||||||+| .+...+.
T Consensus 10 GGvGKTT~~~nLA~~La 26 (270)
T cd02040 10 GGIGKSTTTQNLSAALA 26 (270)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 999999999 7666544
No 303
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.21 E-value=6.1 Score=47.41 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=13.9
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+||||+| .+..++.
T Consensus 207 ~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 207 EPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 4799999999 8777653
No 304
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=75.19 E-value=3.8 Score=42.80 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=20.3
Q ss_pred CCCCcHHHHH-HHHHHhhcc------CCceEEEEecchhh
Q 005085 1 MGGIGKTTIG-VVFNQFSQK------FEGKYFMANVREES 33 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~------F~~~~wv~~v~~~~ 33 (715)
.+|+||||+| ++.-.+... =...+||. .-+.|
T Consensus 103 ~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~-te~~f 141 (310)
T TIGR02236 103 EFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID-TENTF 141 (310)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE-CCCCC
Confidence 3799999999 776543211 12678887 44434
No 305
>PF15202 Adipogenin: Adipogenin
Probab=75.13 E-value=1.1 Score=33.61 Aligned_cols=11 Identities=64% Similarity=1.703 Sum_probs=9.5
Q ss_pred ccccccccccc
Q 005085 698 CCFDYEPWTKT 708 (715)
Q Consensus 698 ~~~~~~~~~~~ 708 (715)
-|||+|||.|.
T Consensus 51 ~c~dwepwsk~ 61 (81)
T PF15202_consen 51 VCFDWEPWSKG 61 (81)
T ss_pred eeecccccccC
Confidence 58999999884
No 306
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.12 E-value=23 Score=39.09 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=29.0
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
...++++++++++..+.+.+.+-... ... ++.++.+++.++|.+
T Consensus 172 c~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdl 216 (451)
T PRK06305 172 CQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSL 216 (451)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 35789999999988877766542221 111 245677888888855
No 307
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.05 E-value=25 Score=40.50 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=30.5
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..++++.+++.++..+.+.+.+-......+ .+.+..|+++++|-.-
T Consensus 172 c~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr 217 (614)
T PRK14971 172 CQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMR 217 (614)
T ss_pred hheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 457999999999988877765533221111 2456778888888653
No 308
>PRK03846 adenylylsulfate kinase; Provisional
Probab=75.05 E-value=3.4 Score=39.92 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=14.1
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+|||||| .+...+..
T Consensus 32 ~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 32 LSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 3599999999 88776543
No 309
>PRK08149 ATP synthase SpaL; Validated
Probab=74.86 E-value=5.9 Score=42.96 Aligned_cols=80 Identities=11% Similarity=0.168 Sum_probs=41.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||||+ .+...... +..+.. .+.... .+ +.++.++.......... ...++ ..+..+.
T Consensus 160 sG~GKTTLl~~i~~~~~~--dv~v~g-~Ig~rg--~e-v~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiA 233 (428)
T PRK08149 160 AGCGKTSLMNMLIEHSEA--DVFVIG-LIGERG--RE-VTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVA 233 (428)
T ss_pred CCCChhHHHHHHhcCCCC--CeEEEE-EEeeCC--cc-HHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHH
Confidence 699999999 77764322 232322 233221 23 55555555543221110 00111 1122233
Q ss_pred HHh--cCCeEEEEEeCccCChH
Q 005085 68 DRL--QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~~~ 87 (715)
+++ ++|.+|+++||+.|--+
T Consensus 234 E~fr~~G~~Vll~~DslTr~A~ 255 (428)
T PRK08149 234 EYFRDQGKRVVLFIDSMTRYAR 255 (428)
T ss_pred HHHHHcCCCEEEEccchHHHHH
Confidence 444 58999999999984433
No 310
>PRK06936 type III secretion system ATPase; Provisional
Probab=74.72 E-value=6 Score=43.01 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-c--------chHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-K--------IPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~--------~~~~l~ 67 (715)
.|+|||||. .+++.... +.++++- +.+..+ + +.++.++.+..-.-... ...++ . .+-.+.
T Consensus 171 sG~GKStLl~~Ia~~~~~--dv~V~~l-iGERgr--E-v~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 244 (439)
T PRK06936 171 AGGGKSTLLASLIRSAEV--DVTVLAL-IGERGR--E-VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIA 244 (439)
T ss_pred CCCChHHHHHHHhcCCCC--CEEEEEE-EccCcH--H-HHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999999 88876543 3444443 444322 2 44444443332111100 11111 0 112234
Q ss_pred HHh--cCCeEEEEEeCccCChH
Q 005085 68 DRL--QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~~~ 87 (715)
++. ++|.+|+++||+.|--+
T Consensus 245 Eyfrd~G~~Vll~~DslTR~A~ 266 (439)
T PRK06936 245 EYFRDQGKRVLLLMDSVTRFAR 266 (439)
T ss_pred HHHHHcCCCEEEeccchhHHHH
Confidence 444 58999999999985433
No 311
>PRK10037 cell division protein; Provisional
Probab=74.70 E-value=2.9 Score=42.17 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+..+
T Consensus 11 GGvGKTT~a~nLA~~La~~ 29 (250)
T PRK10037 11 GGVGTTSITAALAWSLQML 29 (250)
T ss_pred CCccHHHHHHHHHHHHHhc
Confidence 999999999 766655443
No 312
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=74.63 E-value=15 Score=35.07 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+||||++ ++.-.+.
T Consensus 40 ~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALA 57 (193)
T ss_dssp CSTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 7666543
No 313
>PRK06762 hypothetical protein; Provisional
Probab=74.62 E-value=2 Score=40.04 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++.++.
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 887765
No 314
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=74.59 E-value=3.3 Score=38.03 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=20.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| .+......+-...+|+.
T Consensus 7 ~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 7 PTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3799999999 88777655545566665
No 315
>PTZ00301 uridine kinase; Provisional
Probab=74.47 E-value=2.7 Score=41.05 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=16.4
Q ss_pred CCCcHHHHH-HHHHHhhccCC
Q 005085 2 GGIGKTTIG-VVFNQFSQKFE 21 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~ 21 (715)
+|.|||||| ++.+++...+.
T Consensus 12 SgSGKTTla~~l~~~l~~~~~ 32 (210)
T PTZ00301 12 SGSGKSSLSTNIVSELMAHCG 32 (210)
T ss_pred CcCCHHHHHHHHHHHHHhhcC
Confidence 699999999 99888765554
No 316
>PRK00131 aroK shikimate kinase; Reviewed
Probab=74.39 E-value=2 Score=40.28 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| ++..+.
T Consensus 12 ~~GsGKstla~~La~~l 28 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5899999999 888875
No 317
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=74.39 E-value=8.4 Score=36.17 Aligned_cols=72 Identities=8% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCC---CCC-cchHHHHHHhcCCeEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDI---GTQ-KIPQYIRDRLQRMKVF 76 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~---~~~-~~~~~l~~~L~~kr~L 76 (715)
+|.||||+| .+..+... ..+++. ....+ -.+.++.|........... +.. ++...+.....+.. +
T Consensus 10 ~~sGKS~~a~~l~~~~~~---~~~~ia-t~~~~-----~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~-~ 79 (170)
T PRK05800 10 ARSGKSRFAERLAAQSGL---QVLYIA-TAQPF-----DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGR-C 79 (170)
T ss_pred CCccHHHHHHHHHHHcCC---CcEeCc-CCCCC-----hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCC-E
Confidence 689999999 76654321 233443 22222 2345555544433333222 111 44444544343333 5
Q ss_pred EEEeCcc
Q 005085 77 IVLDDVN 83 (715)
Q Consensus 77 lVLDDv~ 83 (715)
+|+|.+.
T Consensus 80 VlID~Lt 86 (170)
T PRK05800 80 VLVDCLT 86 (170)
T ss_pred EEehhHH
Confidence 7777764
No 318
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=74.35 E-value=2.4 Score=42.22 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecc
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVR 30 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~ 30 (715)
||+||||+| .+.--....|.....=++|-
T Consensus 11 GGtGKTTva~~la~~l~~~~~~~l~DcDVe 40 (284)
T COG1149 11 GGTGKTTVAANLAVLLGDKYKLVLADCDVE 40 (284)
T ss_pred CCCChhhHHHHHHHHhccccceEEEecCCC
Confidence 999999999 88777777777766655553
No 319
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=74.35 E-value=3.4 Score=46.07 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=18.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| +......++=+.+++++
T Consensus 271 ~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4799999999 65554444445666765
No 320
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=8.9 Score=39.31 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCCCcHHHHH-HHHHHh----hccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQF----SQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~----~~~F~~~~wv~ 27 (715)
++|.|||+|. +++.+. ...|.....++
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 6899999999 999853 35566666665
No 321
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=74.23 E-value=3.3 Score=41.13 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=17.3
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||++ .+..-+...=+.++=|.
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 999999999 77765444433444443
No 322
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=74.22 E-value=2.9 Score=42.55 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=12.9
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+...++.
T Consensus 9 GGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 9 GGIGKSTTSSNLSVALAK 26 (267)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999998 66654443
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=74.15 E-value=2.4 Score=32.99 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
..|+||||+| ++.+.+
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 3699999999 777764
No 324
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=74.11 E-value=3 Score=41.90 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=12.8
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+...+.
T Consensus 10 GGvGKTt~a~~LA~~la 26 (251)
T TIGR01969 10 GGTGKTTITANLGVALA 26 (251)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 999999999 7666543
No 325
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=74.11 E-value=4.7 Score=38.97 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=39.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
+.|.||||++ ++...+......+++...-...+.... . ..+..+ ...........+.++..|+...=.+++
T Consensus 9 ptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-~----~~~i~q---~~vg~~~~~~~~~i~~aLr~~pd~ii~ 80 (198)
T cd01131 9 PTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-K----RSLINQ---REVGLDTLSFENALKAALRQDPDVILV 80 (198)
T ss_pred CCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-c----cceeee---cccCCCccCHHHHHHHHhcCCcCEEEE
Confidence 3699999999 888777665555655432111111001 0 001000 000111114556677777766668888
Q ss_pred eCcc
Q 005085 80 DDVN 83 (715)
Q Consensus 80 DDv~ 83 (715)
|.+.
T Consensus 81 gEir 84 (198)
T cd01131 81 GEMR 84 (198)
T ss_pred cCCC
Confidence 9884
No 326
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=74.09 E-value=1.7 Score=44.27 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+...+.+
T Consensus 11 GGvGKTT~a~nLA~~La~ 28 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYSN 28 (264)
T ss_pred CCCcHHHHHHHHhcccCC
Confidence 999999999 77765554
No 327
>PRK04296 thymidine kinase; Provisional
Probab=74.04 E-value=3 Score=40.03 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=16.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
.|.||||+| ....+...+-...+.+
T Consensus 11 ~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 499999999 7777665553333333
No 328
>PRK13947 shikimate kinase; Provisional
Probab=74.00 E-value=2.1 Score=40.17 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
|+|+||||+| .+.+++.
T Consensus 9 ~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 6899999999 8887653
No 329
>PF13245 AAA_19: Part of AAA domain
Probab=73.92 E-value=8.1 Score=30.74 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=15.3
Q ss_pred CCCCcHHHHH--HHHHHhh--ccCCceEEEE
Q 005085 1 MGGIGKTTIG--VVFNQFS--QKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa--~vy~~~~--~~F~~~~wv~ 27 (715)
.+|.||||++ .+..-+. ......+-+.
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~ 48 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVL 48 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4899999666 4444442 2234455443
No 330
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=73.65 E-value=21 Score=40.06 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=31.3
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
..+++.+++.++..+...+.+-.....-+ ++.++.|++.++|.+--+
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDT 215 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 57899999999988877655432221111 355778888888877443
No 331
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=73.53 E-value=3.1 Score=42.68 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.4
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
|||||||+| .+...+.
T Consensus 10 GGVGKTT~a~nLA~~La 26 (279)
T PRK13230 10 GGIGKSTTVCNIAAALA 26 (279)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 999999999 6665443
No 332
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=73.45 E-value=3.9 Score=35.71 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=18.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
.||+||||++ .+...+++.-....-+
T Consensus 7 kgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4899999999 8887765543333333
No 333
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=73.40 E-value=3.5 Score=48.58 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||+|| .+...+
T Consensus 492 p~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 492 PTGVGKTELAKQLAEAL 508 (731)
T ss_pred CCCccHHHHHHHHHHHh
Confidence 4799999999 887765
No 334
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=73.33 E-value=6.2 Score=41.04 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=37.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCC-----CCCC-cchHHHHHHhc-CC
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFD-----IGTQ-KIPQYIRDRLQ-RM 73 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~-----~~~~-~~~~~l~~~L~-~k 73 (715)
.|+|||||| ++..++.+.-..++||. ....+ -...+..++.+-.. .+.. +....+.+.++ +.
T Consensus 62 ~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~l---------d~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~ 131 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQKQGGICAFID-AEHAL---------DPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGA 131 (322)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS------------HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTS
T ss_pred CCCchhhhHHHHHHhhhcccceeEEec-Ccccc---------hhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhccc
Confidence 588999999 88777666667788987 33222 22333344332211 1111 33333334443 45
Q ss_pred eEEEEEeCcc
Q 005085 74 KVFIVLDDVN 83 (715)
Q Consensus 74 r~LlVLDDv~ 83 (715)
.-++|+|-|-
T Consensus 132 ~~lVVvDSv~ 141 (322)
T PF00154_consen 132 VDLVVVDSVA 141 (322)
T ss_dssp ESEEEEE-CT
T ss_pred ccEEEEecCc
Confidence 5688999887
No 335
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=73.29 E-value=27 Score=39.73 Aligned_cols=45 Identities=7% Similarity=0.073 Sum_probs=24.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..++..+++.++..+.+.+.+......-+ ++.+..|++.++|.+-
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~~egi~id--~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCLEDQIKYE--DEALKWIAYKSTGSVR 215 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 35677777777766666554432221111 2345556666776553
No 336
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=73.23 E-value=2.9 Score=39.59 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
+.|+|||||. +..+++++.|...+-.
T Consensus 21 p~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 21 PPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 4799999999 9999998887776543
No 337
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=72.92 E-value=2.2 Score=43.71 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=11.9
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
|||||||+| .+....
T Consensus 10 GGVGKTT~a~nLA~~L 25 (273)
T PRK13232 10 GGIGKSTTTQNLTAAL 25 (273)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 999999998 665543
No 338
>PRK00279 adk adenylate kinase; Reviewed
Probab=72.84 E-value=22 Score=34.73 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=12.3
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+..+
T Consensus 8 ~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 8 PPGAGKGTQAKFIAEK 23 (215)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5899999999 77654
No 339
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=72.79 E-value=2.2 Score=43.67 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=11.9
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
|||||||+| .+...+
T Consensus 9 GGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 9 GGIGKSTTTQNIAAAL 24 (275)
T ss_pred CcCcHHHHHHHHHHHH
Confidence 999999999 665543
No 340
>PRK05922 type III secretion system ATPase; Validated
Probab=72.77 E-value=5.8 Score=43.08 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=15.1
Q ss_pred HHHHh--cCCeEEEEEeCccCC
Q 005085 66 IRDRL--QRMKVFIVLDDVNKD 85 (715)
Q Consensus 66 l~~~L--~~kr~LlVLDDv~r~ 85 (715)
+.+++ +++.+|+++||+.|-
T Consensus 238 iAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 238 IAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHcCCCEEEeccchhHH
Confidence 44444 589999999999843
No 341
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=72.65 E-value=13 Score=38.48 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=12.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| ++..+.
T Consensus 10 ~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 10 VPGSGKSTWAREFAAKN 26 (300)
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 4799999999 766553
No 342
>PRK05973 replicative DNA helicase; Provisional
Probab=72.29 E-value=6.3 Score=39.15 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=17.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++......+=..+++++
T Consensus 72 ~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 72 RPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3799999999 65544333334455665
No 343
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=72.06 E-value=4.7 Score=44.41 Aligned_cols=74 Identities=26% Similarity=0.304 Sum_probs=39.7
Q ss_pred CCCcHHHHH--HHHHHhhccCCce-EEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC------------cc
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGK-YFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ------------KI 62 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~-~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~------------~~ 62 (715)
.|+||||+| .+.++... +.. +++. +.+... + +.++.+++...-.-... ...+. ..
T Consensus 152 ~gtGKT~lal~~I~~q~~~--dv~~V~~~-IGer~~--e-v~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~ti 225 (507)
T PRK07165 152 RQTGKTHIALNTIINQKNT--NVKCIYVA-IGQKRE--N-LSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAH 225 (507)
T ss_pred CCCCccHHHHHHHHHhcCC--CeEEEEEE-ccCChH--H-HHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 589999997 77776433 333 4443 555432 2 55566655543211100 00111 12
Q ss_pred hHHHHHHhcCCeEEEEEeCccC
Q 005085 63 PQYIRDRLQRMKVFIVLDDVNK 84 (715)
Q Consensus 63 ~~~l~~~L~~kr~LlVLDDv~r 84 (715)
++.++.. +.+|+|+||+.|
T Consensus 226 AEyfrd~---~dVLlv~DdLTr 244 (507)
T PRK07165 226 AENISYN---DDVLIVFDDLTK 244 (507)
T ss_pred HHHHHhc---CceEEEEcChHH
Confidence 3333333 899999999973
No 344
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=71.72 E-value=25 Score=37.09 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=30.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVL 147 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (715)
..+.+.+++.+++.+...+.. + .+ .+.+..++..++|.|..+..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 468899999999988776532 1 11 123678899999999654433
No 345
>PRK05480 uridine/cytidine kinase; Provisional
Probab=71.40 E-value=2.6 Score=41.09 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
..|+|||||| .++..+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 14 GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 3799999999 888865
No 346
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=71.19 E-value=2.5 Score=39.41 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEE
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYF 25 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~w 25 (715)
+|||||.|. .||+++.+++...|=
T Consensus 18 sGVGKtSLmn~yv~~kF~~qykaTIg 43 (210)
T KOG0394|consen 18 SGVGKTSLMNQYVNKKFSQQYKATIG 43 (210)
T ss_pred CCccHHHHHHHHHHHHHHHHhccccc
Confidence 799999999 688888877776643
No 347
>PRK07667 uridine kinase; Provisional
Probab=71.13 E-value=4.4 Score=39.00 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.4
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|.||||+| .+...+...
T Consensus 25 ~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 4799999999 888876543
No 348
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=70.91 E-value=2.6 Score=41.20 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=12.3
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||.+ .+...+.
T Consensus 9 GGvGKTt~~~nLA~~la 25 (212)
T cd02117 9 GGIGKSTTSQNLSAALA 25 (212)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 999999998 6655443
No 349
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=70.88 E-value=3.9 Score=41.83 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=11.3
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
|||||||+| .+...
T Consensus 10 GGVGKTT~~~nLA~~ 24 (274)
T PRK13235 10 GGIGKSTTTQNTVAG 24 (274)
T ss_pred CCccHHHHHHHHHHH
Confidence 999999998 55553
No 350
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.70 E-value=7.9 Score=46.37 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||+|| ++.+.+
T Consensus 547 p~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 547 PTGVGKTELTKALASYF 563 (821)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 4799999999 887754
No 351
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.69 E-value=15 Score=40.07 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=17.9
Q ss_pred CCCCcHHHHH-HHHHHhh--ccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFS--QKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~--~~F~~~~wv~ 27 (715)
++|+||||++ .+..... ..-..++.|.
T Consensus 229 ptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4899999999 7766544 3334455554
No 352
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=70.64 E-value=2.3 Score=40.25 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
-||+||||+| .+.-.+
T Consensus 8 kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 8 KGGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 3999999999 665544
No 353
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=70.50 E-value=3.1 Score=39.30 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| ++.++.
T Consensus 10 ~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 10 GSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 5799999999 887664
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=70.32 E-value=2.8 Score=38.27 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=12.6
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+...
T Consensus 7 ~~GsGKST~a~~l~~~ 22 (150)
T cd02021 7 VSGSGKSTVGKALAER 22 (150)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 4799999999 77665
No 355
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=70.16 E-value=4.2 Score=40.65 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=14.4
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+..+
T Consensus 11 GGvGKTt~a~nla~~la~~ 29 (246)
T TIGR03371 11 GGVGKTTLTANLASALKLL 29 (246)
T ss_pred CCccHHHHHHHHHHHHHhC
Confidence 999999999 777765543
No 356
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.14 E-value=1.1e+02 Score=31.89 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=32.0
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
...+.+.+++.+++.+.+.+.. .. .+..+++.++|.|+.+..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~---~~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG---IT-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC---Cc-------hHHHHHHHcCCCHHHHHHHh
Confidence 3578999999999998776531 11 13567899999998776553
No 357
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=70.13 E-value=6.5 Score=42.82 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=15.4
Q ss_pred HHHHhc---CCeEEEEEeCccCC
Q 005085 66 IRDRLQ---RMKVFIVLDDVNKD 85 (715)
Q Consensus 66 l~~~L~---~kr~LlVLDDv~r~ 85 (715)
+.++++ +|.+|+++||+.|-
T Consensus 237 iAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 237 TAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHHHHHHhcCCcEEEeccChHHH
Confidence 555654 69999999999743
No 358
>PRK06217 hypothetical protein; Validated
Probab=69.69 E-value=3 Score=39.74 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|.||||+| ++....
T Consensus 9 ~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 9 ASGSGTTTLGAALAERL 25 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 4799999999 888764
No 359
>PRK13768 GTPase; Provisional
Probab=69.68 E-value=4.5 Score=40.79 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+||+||||++ .+....+.
T Consensus 10 ~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred CCCccHHHHHHHHHHHHHh
Confidence 4899999999 66665443
No 360
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=69.64 E-value=4.9 Score=38.12 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.4
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
.|+|||||| .+...+...
T Consensus 8 sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 8 SGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 699999999 888766543
No 361
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=69.59 E-value=5.6 Score=44.20 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|.|||.|| ++.++..-.
T Consensus 231 PPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred CCCccHHHHHHHHhhhcCCc
Confidence 5899999999 888875443
No 362
>PRK06696 uridine kinase; Validated
Probab=69.49 E-value=4.4 Score=40.03 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||+| ++.+.+...
T Consensus 30 ~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 30 ITASGKTTFADELAEEIKKR 49 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 3799999999 888877554
No 363
>PRK13695 putative NTPase; Provisional
Probab=69.43 E-value=4.4 Score=38.19 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=17.9
Q ss_pred CCCCcHHHHH-HHHHHhhc-cCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-KFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-~F~~~~wv 26 (715)
.+|+|||||+ .+++.++. .+....|+
T Consensus 8 ~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 8 PPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4799999999 88887653 34433344
No 364
>PRK04040 adenylate kinase; Provisional
Probab=69.36 E-value=3.6 Score=39.39 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+||||++ .+..++.
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 5899999999 8887764
No 365
>PTZ00088 adenylate kinase 1; Provisional
Probab=69.27 E-value=7.9 Score=38.34 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+.++
T Consensus 14 ~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 14 APGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5899999999 77654
No 366
>PRK13975 thymidylate kinase; Provisional
Probab=69.21 E-value=3.2 Score=39.94 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.9
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||+| .+.+++..
T Consensus 10 ~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 4699999999 88887654
No 367
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.96 E-value=4.7 Score=47.62 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+|||||| ++.+....
T Consensus 220 ppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred CCCCChHHHHHHHHHHhCC
Confidence 4799999999 88887543
No 368
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=68.96 E-value=5 Score=38.18 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.3
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
.|.||||+| .+.....
T Consensus 27 ~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 27 SGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 599999999 8887654
No 369
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=68.79 E-value=3.1 Score=39.95 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
|=|+|||||| .+.++..
T Consensus 12 ~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 12 MIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccccCHHHHHHHHHHHhC
Confidence 4599999999 6666543
No 370
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=45 Score=38.77 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=38.7
Q ss_pred ChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcch
Q 005085 85 DKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLa 143 (715)
+...++.-.-+..+.++.-+.....++|..|+-..... .+..++++ |+..-.|.+=|
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 33344333446788899999999999999998554332 34455666 88888887744
No 371
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=68.67 E-value=8.1 Score=37.58 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
-|+||||.+ .++..++.+.-.++|..
T Consensus 12 DGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 12 DGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 499999999 99998887766666665
No 372
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=68.66 E-value=2.8 Score=37.81 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=11.8
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
+|+||||+| ++...
T Consensus 16 PG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEK 30 (176)
T ss_pred CCCCchhHHHHHHHH
Confidence 799999999 77753
No 373
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=68.55 E-value=11 Score=39.74 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.8
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|.|||.+| +++++..-.
T Consensus 156 PPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 156 GKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 4799999999 999986544
No 374
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=68.55 E-value=0.27 Score=54.29 Aligned_cols=149 Identities=18% Similarity=0.148 Sum_probs=91.8
Q ss_pred CcEEeccCCCCcc-----cCcccCCC-CCCCEEEcccccccc----cccccccCCCCccEeecCCCcCCC----ccchhc
Q 005085 425 VVELNLMCTPIEE-----VPLSIECL-PNLEILEMSFCYSLK----RLSTSICKLKYLSSLDLSYCINLE----SFPEIL 490 (715)
Q Consensus 425 L~~L~L~~n~l~~-----lp~~~~~l-~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~~~~----~~p~~~ 490 (715)
|+.|++++|.+.. +-..+... ..|++|.+..|.+.. .+...+.....|+.++++.|.+.. .++..+
T Consensus 117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l 196 (478)
T KOG4308|consen 117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQAL 196 (478)
T ss_pred HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhh
Confidence 3456666666651 11123333 567778888776553 344556667889999999887642 122233
Q ss_pred ----cCCcccccccccccccccc-----cchhhcCCCC-CCEEEecCCCCCCC-----------C-CCcCeEEecCccCC
Q 005085 491 ----EKMELLEEINLEEASNIKE-----LPSSIENLEG-LKQLKLTGCTKLGS-----------L-PETKNWMHPYCKHY 548 (715)
Q Consensus 491 ----~~l~~L~~L~L~~n~~~~~-----lp~~l~~l~~-L~~L~Ls~n~~~~~-----------l-p~L~~L~l~~n~L~ 548 (715)
....++++|.+++| .++. +-..+...+. +..|++..|.+-.. + +.+++++++.|.++
T Consensus 197 ~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 197 ESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred hhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 35778999999998 4432 2223455565 77799999887644 3 46799999999977
Q ss_pred C---CCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 549 P---ITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 549 ~---~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
+ ..+...+.+... +.+.+.+.+....
T Consensus 276 ~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 276 EKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred ccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 6 223333333334 6677765544433
No 375
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=68.53 E-value=4.7 Score=40.70 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=13.4
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+......
T Consensus 11 GGvGKTt~a~~lA~~la~ 28 (261)
T TIGR01968 11 GGVGKTTTTANLGTALAR 28 (261)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 999999999 76665443
No 376
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=68.50 E-value=24 Score=40.98 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|.||||+| .+.++....
T Consensus 193 ~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 4799999999 887765443
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=68.26 E-value=5.1 Score=40.89 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=18.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
++|+||||.+ .+....++.-....++.
T Consensus 80 ~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5899999999 77776655433344443
No 378
>PRK06820 type III secretion system ATPase; Validated
Probab=68.18 E-value=9 Score=41.74 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHHh--cCCeEEEEEeCccCCh
Q 005085 66 IRDRL--QRMKVFIVLDDVNKDK 86 (715)
Q Consensus 66 l~~~L--~~kr~LlVLDDv~r~~ 86 (715)
+.+++ +++.+|+++||+.|--
T Consensus 244 iAEyfrd~G~~VLl~~Dsltr~A 266 (440)
T PRK06820 244 IAEYFRDRGKKVLLMADSLTRYA 266 (440)
T ss_pred HHHHHHHcCCCEEEEccchhHHH
Confidence 44444 5899999999998443
No 379
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=68.09 E-value=9.4 Score=41.53 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=17.2
Q ss_pred HHHHh--cCCeEEEEEeCccCChHHHH
Q 005085 66 IRDRL--QRMKVFIVLDDVNKDKTILE 90 (715)
Q Consensus 66 l~~~L--~~kr~LlVLDDv~r~~~v~~ 90 (715)
+.++. ++|.+|+++||+.|--+..+
T Consensus 237 iAEyFrd~G~~Vll~~DslTr~A~A~R 263 (434)
T PRK08472 237 VAEYFKNQGLDVLFIMDSVTRFAMAQR 263 (434)
T ss_pred HHHHHHHcCCCEEEecccchHHHHHHH
Confidence 44444 58999999999985444333
No 380
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=67.53 E-value=11 Score=39.34 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-----CCCCC--------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-----DIGTQ--------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~--------~~~~~l~ 67 (715)
.|.|||||. .+...... +..+... +.+.. .+ +.++.++....-.-... ..++. ...-.+.
T Consensus 78 sG~GKTtLl~~Ia~~~~~--~~~vi~~-iGer~--~e-v~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~A 151 (326)
T cd01136 78 SGVGKSTLLGMIARGTTA--DVNVIAL-IGERG--RE-VREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIA 151 (326)
T ss_pred CCCChHHHHHHHhCCCCC--CEEEEEE-EecCC--cc-HHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 699999999 77765432 2222222 22221 23 45555444433211100 01110 1122233
Q ss_pred HHh--cCCeEEEEEeCccCChHH
Q 005085 68 DRL--QRMKVFIVLDDVNKDKTI 88 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~~~v 88 (715)
+++ ++|.+|+++||+.|--+.
T Consensus 152 Eyfr~~g~~Vll~~Dsltr~a~A 174 (326)
T cd01136 152 EYFRDQGKDVLLLMDSLTRFAMA 174 (326)
T ss_pred HHHHHcCCCeEEEeccchHHHHH
Confidence 344 589999999999854433
No 381
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=67.41 E-value=57 Score=37.12 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=11.6
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+.+.
T Consensus 46 p~GtGKTt~Ak~lAka 61 (559)
T PRK05563 46 PRGTGKTSAAKIFAKA 61 (559)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999 55554
No 382
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=67.36 E-value=9.3 Score=38.08 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCCCcHHHHH-H-HHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-V-VFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~-vy~~~~~~F~~~~wv~ 27 (715)
.+|.||||+| + +|+.+ +.-+.++|++
T Consensus 29 ~pGsGKT~la~~~l~~~~-~~ge~~lyvs 56 (237)
T TIGR03877 29 GPGTGKSIFSQQFLWNGL-QMGEPGIYVA 56 (237)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCcEEEEE
Confidence 3799999999 5 55555 4456778887
No 383
>PRK06547 hypothetical protein; Provisional
Probab=67.28 E-value=3.7 Score=38.70 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.7
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+.+.
T Consensus 23 ~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 23 RSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999 88775
No 384
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.27 E-value=15 Score=39.15 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=42.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.||||+||. .+.+. ..+|..+-.= +.+.- .+ +++..++.+..-+.... ...++ ..+..|.
T Consensus 172 sGVGKStLLgMiar~--t~aDv~ViaL-IGERG--RE-VrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IA 245 (441)
T COG1157 172 SGVGKSTLLGMIARN--TEADVNVIAL-IGERG--RE-VREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIA 245 (441)
T ss_pred CCCcHHHHHHHHhcc--ccCCEEEEEE-eeccc--hh-HHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999999 77764 3445443221 22221 23 55555555554432221 11111 1234455
Q ss_pred HHh--cCCeEEEEEeCccC
Q 005085 68 DRL--QRMKVFIVLDDVNK 84 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r 84 (715)
++. +||++|+++|-+.|
T Consensus 246 EyFRDqG~~VLL~mDSlTR 264 (441)
T COG1157 246 EYFRDQGKRVLLIMDSLTR 264 (441)
T ss_pred HHHHhCCCeEEEEeecHHH
Confidence 555 57999999999973
No 385
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=67.27 E-value=19 Score=34.99 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.2
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+..+
T Consensus 7 ~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEK 22 (210)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5899999999 76654
No 386
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.22 E-value=13 Score=43.82 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=44.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEE-
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIV- 78 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV- 78 (715)
+-|+|||-|| ++...+-.-.+..+-+. .++ .++ ..++.+..+.....+.-.+|.+.++++.|=+|
T Consensus 599 pdgvGKt~lAkaLA~~~Fgse~~~IriD-mse----------~~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVL 665 (898)
T KOG1051|consen 599 PDGVGKTELAKALAEYVFGSEENFIRLD-MSE----------FQE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVL 665 (898)
T ss_pred CCchhHHHHHHHHHHHHcCCccceEEec-hhh----------hhh--hhhccCCCcccccchhHHHHHHHHhcCCceEEE
Confidence 3599999999 98888766556555554 332 222 22332222222222455688899999888776
Q ss_pred EeCcc
Q 005085 79 LDDVN 83 (715)
Q Consensus 79 LDDv~ 83 (715)
+|||+
T Consensus 666 fdeIE 670 (898)
T KOG1051|consen 666 FEEIE 670 (898)
T ss_pred Eechh
Confidence 59998
No 387
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=67.11 E-value=5.3 Score=41.24 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=11.9
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
|||||||.| .+...+
T Consensus 9 GGVGKTTta~nLA~~L 24 (290)
T CHL00072 9 GGIGKSTTSCNISIAL 24 (290)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 999999999 655543
No 388
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=67.08 E-value=14 Score=40.05 Aligned_cols=78 Identities=8% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||+|+ .+.++... +..+++. +.+... + +.++.+++...-.-+.. ...++ ..+-.+.
T Consensus 149 aGvgk~~L~~~ia~~~~~--~v~Vfa~-iGeR~r--E-~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiA 222 (436)
T PRK02118 149 SGEPYNALLARIALQAEA--DIIILGG-MGLTFD--D-YLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVA 222 (436)
T ss_pred CCCCHHHHHHHHHHhhCC--CeEEEEE-eccchh--H-HHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 589999999 88776433 4566665 655432 3 55666655543211110 11111 1123344
Q ss_pred HHhc---CCeEEEEEeCccCC
Q 005085 68 DRLQ---RMKVFIVLDDVNKD 85 (715)
Q Consensus 68 ~~L~---~kr~LlVLDDv~r~ 85 (715)
++++ ++.+|+++||+.|-
T Consensus 223 Eyfrd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 223 EKFALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHHHhcCCCCEEEeccCchHH
Confidence 5552 38999999999844
No 389
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=66.91 E-value=11 Score=40.98 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=15.6
Q ss_pred HHHHh--cCCeEEEEEeCccCCh
Q 005085 66 IRDRL--QRMKVFIVLDDVNKDK 86 (715)
Q Consensus 66 l~~~L--~~kr~LlVLDDv~r~~ 86 (715)
+.+++ +++.+|+|+||+.|--
T Consensus 221 iAEyfrd~G~~Vll~~DslTr~A 243 (418)
T TIGR03498 221 IAEYFRDQGKDVLLLMDSVTRFA 243 (418)
T ss_pred HHHHHHHcCCCEEEeccchhHHH
Confidence 44444 5899999999998543
No 390
>PRK10865 protein disaggregation chaperone; Provisional
Probab=66.85 E-value=15 Score=44.04 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=13.9
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.+...
T Consensus 606 p~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 606 PTGVGKTELCKALANFMF 623 (857)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 4799999999 8887653
No 391
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=66.78 E-value=3.5 Score=40.11 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||| ++.....
T Consensus 14 ~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 4799999999 8877543
No 392
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=66.75 E-value=6.3 Score=38.55 Aligned_cols=17 Identities=41% Similarity=0.854 Sum_probs=12.9
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+..++..
T Consensus 9 GG~GKTtiaalll~~l~~ 26 (255)
T COG3640 9 GGVGKTTIAALLLKRLLS 26 (255)
T ss_pred CCccHHHHHHHHHHHHHh
Confidence 999999999 65655433
No 393
>PRK13949 shikimate kinase; Provisional
Probab=66.64 E-value=3.8 Score=38.45 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|.|.||||+| .+.+..
T Consensus 9 ~~GsGKstl~~~La~~l 25 (169)
T PRK13949 9 YMGAGKTTLGKALAREL 25 (169)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 6899999999 888764
No 394
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.60 E-value=10 Score=40.77 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||.+ .+.....
T Consensus 182 ptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4699999999 7776543
No 395
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=66.31 E-value=3.8 Score=38.84 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| ++..+.
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 5899999999 776653
No 396
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=65.92 E-value=4.5 Score=23.00 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=16.1
Q ss_pred cccEEEecCCCcccccccC
Q 005085 310 ESYRTQLSFKKVEQIWEGQ 328 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~ 328 (715)
+|..|++.+++++.+|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4778999999999998875
No 397
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=65.84 E-value=3.4 Score=38.40 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=10.5
Q ss_pred CCCcHHHHH-HHH
Q 005085 2 GGIGKTTIG-VVF 13 (715)
Q Consensus 2 gGiGKTTLa-~vy 13 (715)
+|+||||.| .+-
T Consensus 9 PGvGKTT~~~~L~ 21 (180)
T COG1936 9 PGVGKTTVCKLLR 21 (180)
T ss_pred CCCchHHHHHHHH
Confidence 899999999 665
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.70 E-value=12 Score=41.66 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ ++......+
T Consensus 358 PtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 4799999999 877765443
No 399
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=65.63 E-value=3.6 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCc
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEG 22 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~ 22 (715)
++|.||||+| .+-+.++.+.+.
T Consensus 18 ~PGTGKTtfaLelL~~l~~~~~v 40 (484)
T PF07088_consen 18 EPGTGKTTFALELLNSLKDHGNV 40 (484)
T ss_pred CCCCCceeeehhhHHHHhccCCe
Confidence 6899999999 999988887764
No 400
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=65.57 E-value=15 Score=39.88 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.3
Q ss_pred cCCeEEEEEeCccCCh
Q 005085 71 QRMKVFIVLDDVNKDK 86 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~ 86 (715)
++|.+|+++||+.|--
T Consensus 225 ~G~~Vll~~Dsltr~A 240 (413)
T TIGR03497 225 QGKDVLLMMDSVTRFA 240 (413)
T ss_pred CCCCEEEEEcCcHHHH
Confidence 4899999999998543
No 401
>PRK10818 cell division inhibitor MinD; Provisional
Probab=65.53 E-value=5.9 Score=40.35 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=12.6
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+.....
T Consensus 12 GGvGKTt~a~nlA~~la 28 (270)
T PRK10818 12 GGVGKTTSSAAIATGLA 28 (270)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 999999999 6665443
No 402
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=65.44 E-value=27 Score=38.89 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=27.4
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glP 141 (715)
...|....++.++-...+..-+-..... -.++....|++..+|-.
T Consensus 170 cq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 170 CQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSL 214 (515)
T ss_pred cccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCCh
Confidence 4578899999998777776655332211 11344566666666643
No 403
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=65.43 E-value=5.5 Score=37.00 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.9
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
.|+|||||+ ++..+
T Consensus 8 ~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 8 PSTGKTTLIEALAAR 22 (163)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc
Confidence 589999999 77766
No 404
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=65.27 E-value=4 Score=38.95 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=13.0
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
+|+||||+| .+....
T Consensus 8 sgsGKTtla~~l~~~~ 23 (187)
T cd02024 8 TNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 699999999 888764
No 405
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=65.16 E-value=5.6 Score=41.45 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=19.8
Q ss_pred CCCCcHHHHH-HHHH--Hhhc----cCCceEEEEecchhhh
Q 005085 1 MGGIGKTTIG-VVFN--QFSQ----KFEGKYFMANVREESE 34 (715)
Q Consensus 1 mgGiGKTTLa-~vy~--~~~~----~F~~~~wv~~v~~~~~ 34 (715)
.+|+|||||+ ++.- +... .=...+||. .-+.|.
T Consensus 104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId-tE~~f~ 143 (313)
T TIGR02238 104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID-TEGTFR 143 (313)
T ss_pred CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE-cCCCCC
Confidence 4799999999 6543 2221 123577887 444443
No 406
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=65.11 E-value=16 Score=38.13 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| ++.+.+-
T Consensus 32 p~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 32 PPGVGKTTAALALAKELL 49 (325)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 4699999999 8877643
No 407
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=65.05 E-value=4.2 Score=37.72 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+-...
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 4799999999 777664
No 408
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=64.83 E-value=4.6 Score=37.74 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=43.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCce-EEEE-----ecchhhhcCC--cHHHHHHHHHHHHhCCCCCC-CC--C-cchHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGK-YFMA-----NVREESEKCG--VLVHLRNQVLSKVLGENFDI-GT--Q-KIPQYIR 67 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~-~wv~-----~v~~~~~~~~--~~~~l~~~i~~~~~~~~~~~-~~--~-~~~~~l~ 67 (715)
|.|+||||+. ++.++..-.|-.. .++. .+++.|...+ ...++-..++..+......+ .. - -..++-+
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~v~~~enr 89 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGGAVLSEENR 89 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCccccCHHHH
Confidence 6799999999 8877543332211 1111 1333333211 14455666666665544211 11 1 3457778
Q ss_pred HHhcCCeEEEEEe
Q 005085 68 DRLQRMKVFIVLD 80 (715)
Q Consensus 68 ~~L~~kr~LlVLD 80 (715)
+.|+++-+.|.||
T Consensus 90 ~~l~~~g~vv~L~ 102 (172)
T COG0703 90 NLLKKRGIVVYLD 102 (172)
T ss_pred HHHHhCCeEEEEe
Confidence 8888877777666
No 409
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=64.62 E-value=4.4 Score=37.03 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|.||||+| .+....
T Consensus 7 ~~GsGKstla~~la~~l 23 (154)
T cd00464 7 MMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 887654
No 410
>PRK06761 hypothetical protein; Provisional
Probab=64.50 E-value=4.5 Score=41.29 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.6
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|+||||+| .+++.+...
T Consensus 11 ~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CCCCCHHHHHHHHHHhcCcC
Confidence 4799999999 999876543
No 411
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=64.27 E-value=13 Score=41.00 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCCcHHHHH-HHHHHhhcc---CC-ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cch
Q 005085 2 GGIGKTTIG-VVFNQFSQK---FE-GKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIP 63 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~---F~-~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~ 63 (715)
.|+|||||+ .+.++.... =+ .++++. +.+..+ + +.++.+++...-.-+.. ...++ -..
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~-iGeRgr--E-v~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 227 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAA-MGITFE--E-ANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMA 227 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEE-eccccH--H-HHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHH
Confidence 599999999 877753211 11 233333 544432 3 56666666553211110 11111 113
Q ss_pred HHHHHHhc---CCeEEEEEeCccCC
Q 005085 64 QYIRDRLQ---RMKVFIVLDDVNKD 85 (715)
Q Consensus 64 ~~l~~~L~---~kr~LlVLDDv~r~ 85 (715)
-.+.++.+ ++++|+++||+.|-
T Consensus 228 ~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 228 LTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHhcCCcEEEEEcChHHH
Confidence 34556654 59999999999743
No 412
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=64.19 E-value=6.6 Score=42.04 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=19.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
.||.|||++. ++.+.++..-+.++.+
T Consensus 30 ~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 30 PAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred CCCCChhHHHHHHHHHhccccceEEEe
Confidence 4899999999 8888777754444433
No 413
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=64.19 E-value=4.6 Score=39.76 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
.|+||||+| .+...+.
T Consensus 8 sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 8 VAVGKSTTARVLQALLS 24 (220)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 699999999 8888765
No 414
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=64.16 E-value=5.9 Score=38.54 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCc-eEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEG-KYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~-~~wv~ 27 (715)
.||+||||+| .+.......... ++.|.
T Consensus 44 kgG~GkSt~a~nLA~~la~~~g~~VLlvD 72 (207)
T TIGR03018 44 LPGEGKSFTAINLAISLAQEYDKTVLLID 72 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3899999999 777765543333 34443
No 415
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=64.07 E-value=12 Score=40.58 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=38.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cchHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~~~l~ 67 (715)
.|+|||||+ .+.+... .+..+++. +.+.. .+ +.+..++....-..... ...+. ..+-.+.
T Consensus 164 sG~GKSTLL~~I~~~~~--~d~~vi~~-iGeRg--rE-v~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiA 237 (433)
T PRK07594 164 PGVGKSTLLAMLCNAPD--ADSNVLVL-IGERG--RE-VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA 237 (433)
T ss_pred CCCCccHHHHHhcCCCC--CCEEEEEE-ECCCc--hH-HHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999 7776543 33344332 22221 12 44444444321100000 01111 0122234
Q ss_pred HHh--cCCeEEEEEeCccCC
Q 005085 68 DRL--QRMKVFIVLDDVNKD 85 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~ 85 (715)
+++ ++|++|+++||+.|-
T Consensus 238 Eyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 238 EFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHCCCcEEEEEeCHHHH
Confidence 444 589999999999844
No 416
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=64.02 E-value=65 Score=30.57 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=31.4
Q ss_pred cchHHHHHHhc-CCeEEEEEeCccCChHHHHHhCcCcEEEcCCCCHHHHHHHHHhh
Q 005085 61 KIPQYIRDRLQ-RMKVFIVLDDVNKDKTILERYGTQRIYEVEGLNCNEVLRLFSSC 115 (715)
Q Consensus 61 ~~~~~l~~~L~-~kr~LlVLDDv~r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~ 115 (715)
.....+.+.+. |+-+++.+| +.--.+|-+.+.....+-+.|-+.++..+-+..+
T Consensus 81 T~~~~ve~~~~~G~~vildId-~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 81 TSREPVEQALAEGKDVILDID-VQGALQVKKKMPNAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEe-hHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHcc
Confidence 45666777774 465655544 2233445556655555667777777766655543
No 417
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.96 E-value=21 Score=38.55 Aligned_cols=15 Identities=33% Similarity=0.197 Sum_probs=12.4
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| ++...
T Consensus 231 ptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 231 PTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999 77654
No 418
>CHL00175 minD septum-site determining protein; Validated
Probab=63.93 E-value=6.5 Score=40.32 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.||+||||+| .+...+.+
T Consensus 24 KGGvGKTt~a~nLA~~La~ 42 (281)
T CHL00175 24 KGGVGKTTTTANLGMSIAR 42 (281)
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 3999999999 76665443
No 419
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=63.85 E-value=17 Score=39.82 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=13.8
Q ss_pred cCCeEEEEEeCccCChH
Q 005085 71 QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~ 87 (715)
+++.+|+++||+.|--+
T Consensus 256 ~G~~VLl~~DslTR~A~ 272 (451)
T PRK05688 256 KGKNVLLLMDSLTRFAQ 272 (451)
T ss_pred CCCCEEEEecchhHHHH
Confidence 58999999999984433
No 420
>PRK13236 nitrogenase reductase; Reviewed
Probab=63.80 E-value=4.3 Score=42.02 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=11.6
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
|||||||.| .+...+
T Consensus 15 GGVGKTt~a~NLA~~L 30 (296)
T PRK13236 15 GGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 999999998 555433
No 421
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=63.60 E-value=82 Score=33.01 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=30.3
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
...+.+.+++.++..+.+.+... . .. ..+...++.++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~-~---~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS-A---EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc-c---Ch---HHHHHHHHHcCCCHHHH
Confidence 35789999999999988876531 1 11 12566788899999644
No 422
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=63.60 E-value=4.3 Score=43.79 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=12.9
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
|||||||+| .+...+.
T Consensus 116 GGVGKTT~a~nLA~~LA 132 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLA 132 (388)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 999999999 7666544
No 423
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=63.55 E-value=4.6 Score=38.38 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+...
T Consensus 11 ~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999 77765
No 424
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=63.46 E-value=6.7 Score=41.10 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=43.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHH----hCCCC-------CCCCC---------
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKV----LGENF-------DIGTQ--------- 60 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~----~~~~~-------~~~~~--------- 60 (715)
.|+|||+|+ ++.++.. -+.++++- +.+.-+ + +.++.+++-+.. +..-. ...++
T Consensus 166 ~G~GKT~L~~~Iak~~~--~dvvVyv~-iGERg~--E-v~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~ 239 (369)
T cd01134 166 FGCGKTVIQQSLSKYSN--SDIVIYVG-CGERGN--E-MTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASI 239 (369)
T ss_pred CCCChHHHHHHHHhCCC--CCEEEEEE-eCCChH--H-HHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHH
Confidence 699999999 8887532 24555554 444322 2 445555543211 11000 01111
Q ss_pred cchHHHHHHh--cCCeEEEEEeCccCChHHHHH
Q 005085 61 KIPQYIRDRL--QRMKVFIVLDDVNKDKTILER 91 (715)
Q Consensus 61 ~~~~~l~~~L--~~kr~LlVLDDv~r~~~v~~~ 91 (715)
...-.+.+++ .++.+|+++|++.|--+-.+.
T Consensus 240 yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~RE 272 (369)
T cd01134 240 YTGITIAEYFRDMGYNVALMADSTSRWAEALRE 272 (369)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHH
Confidence 0112233344 489999999999765444433
No 425
>PRK13946 shikimate kinase; Provisional
Probab=63.45 E-value=4.8 Score=38.36 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=13.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|.|+||||+| .+.+++
T Consensus 18 ~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 18 LMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 6899999999 888765
No 426
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=63.32 E-value=14 Score=44.47 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+|||++| .+......
T Consensus 603 p~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 603 PTGVGKTELAKALAEFLFD 621 (852)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 4799999999 88776533
No 427
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=63.31 E-value=12 Score=39.56 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVL 79 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVL 79 (715)
+.|.||||++ .+.+.+.+..+.+++...-.-.+.... . ..+ +...+...........++..|+...=.|++
T Consensus 130 ~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~-~----~~~---i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 130 PTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRN-K----RSL---INQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccC-c----cce---EEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 3699999999 888877766666666542111110000 0 000 000000111114566788888888888888
Q ss_pred eCccCChH
Q 005085 80 DDVNKDKT 87 (715)
Q Consensus 80 DDv~r~~~ 87 (715)
|.+. +..
T Consensus 202 gEir-d~~ 208 (343)
T TIGR01420 202 GEMR-DLE 208 (343)
T ss_pred eCCC-CHH
Confidence 9884 444
No 428
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=63.21 E-value=93 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=32.5
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
...+.+++++.++..+.+.+..-... . + .....++..++|.|..+..
T Consensus 174 cq~i~f~~l~~~~~~~~L~~~~~~~~--~-~--~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 174 CQIIPFYRLSDEQLEQVLKRLGDEEI--L-N--INFPELLALAQGSPGAAIA 220 (314)
T ss_pred ceEEecCCCCHHHHHHHHHHhhcccc--c-h--hHHHHHHHHcCCCHHHHHH
Confidence 46889999999999998887642111 0 1 1135788899999966544
No 429
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=63.10 E-value=20 Score=38.11 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCCcHHHHH-HHHHHh--hccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQF--SQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~--~~~F~~~~wv~ 27 (715)
.+|.|||.|| .++.++ .......++++
T Consensus 9 ~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 9 GAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred cCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 3899999999 998887 66777777776
No 430
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=63.09 E-value=6.9 Score=42.18 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=13.6
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
|||||||.| .+...+..
T Consensus 116 GGVGKTTta~nLA~~LA~ 133 (387)
T PHA02519 116 GGVYKTSSAVHTAQWLAL 133 (387)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999 77765543
No 431
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=63.02 E-value=13 Score=40.56 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.6
Q ss_pred cCCeEEEEEeCccCChH
Q 005085 71 QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~ 87 (715)
+++.+|+++||+.|--+
T Consensus 252 ~G~~Vll~~DslTr~A~ 268 (450)
T PRK06002 252 RGENVLLIVDSVTRFAH 268 (450)
T ss_pred cCCCEEEeccchHHHHH
Confidence 48999999999984433
No 432
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=63.01 E-value=59 Score=35.23 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=13.9
Q ss_pred CcCcEEEcCCCCHHHHHHH
Q 005085 93 GTQRIYEVEGLNCNEVLRL 111 (715)
Q Consensus 93 ~~~~~~~l~~L~~~es~~L 111 (715)
|....+.+-||+-.|-..+
T Consensus 144 GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 144 GRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceeEEECCCCHHHHHhh
Confidence 4456788899998887654
No 433
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.89 E-value=6.4 Score=40.18 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=11.3
Q ss_pred cCCeEEEEEeCcc
Q 005085 71 QRMKVFIVLDDVN 83 (715)
Q Consensus 71 ~~kr~LlVLDDv~ 83 (715)
.+||.++.+||+.
T Consensus 98 ~~k~lv~fiDDlN 110 (272)
T PF12775_consen 98 GGKKLVLFIDDLN 110 (272)
T ss_dssp SSSEEEEEEETTT
T ss_pred CCcEEEEEecccC
Confidence 4789999999997
No 434
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=62.86 E-value=13 Score=36.99 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCCcHHHHH-HHHHH-hhccCCceEEEEecchhhhcCCcHHHHHHHHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ-FSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKV 50 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~-~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~ 50 (715)
.+|+||||+| ++..+ ..++=...+|++ .-. . ..++.+.++...
T Consensus 21 ~~G~GKT~~~~~~~~~~~~~~g~~vly~s-~E~-----~-~~~~~~r~~~~~ 65 (242)
T cd00984 21 RPSMGKTAFALNIAENIAKKQGKPVLFFS-LEM-----S-KEQLLQRLLASE 65 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCceEEEe-CCC-----C-HHHHHHHHHHHh
Confidence 3799999999 66554 444234556776 221 2 556666665543
No 435
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.84 E-value=4.3 Score=24.63 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=5.6
Q ss_pred CCcCeEEecCcc
Q 005085 535 PETKNWMHPYCK 546 (715)
Q Consensus 535 p~L~~L~l~~n~ 546 (715)
|+|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 344444444444
No 436
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=62.82 E-value=4.7 Score=40.93 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+|||+|| ++....
T Consensus 29 ~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKR 45 (262)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 887644
No 437
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.74 E-value=47 Score=37.99 Aligned_cols=43 Identities=7% Similarity=0.069 Sum_probs=22.6
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
..+++..++.++..+.+...+-... ... .+....+++.++|..
T Consensus 171 ~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~l 214 (576)
T PRK14965 171 QRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSM 214 (576)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCH
Confidence 3566777777776655554332111 111 234556677777644
No 438
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=62.56 E-value=5.2 Score=36.60 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+..+
T Consensus 4 ~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKR 19 (151)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHh
Confidence 5899999999 77775
No 439
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=23 Score=39.72 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.9
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFK 118 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~ 118 (715)
+..+.++.-+.++..+.|..+.-.
T Consensus 402 d~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 402 DRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ceEeecCCCCHHHHHHHHHHHhcc
Confidence 567888889999999999988753
No 440
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=62.40 E-value=4.9 Score=38.00 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++....
T Consensus 9 ~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 9 PSGAGKDTLLDYARARL 25 (179)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 4799999999 877754
No 441
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=62.28 E-value=5 Score=35.36 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=11.1
Q ss_pred CCcHHHHH-HHHHH
Q 005085 3 GIGKTTIG-VVFNQ 15 (715)
Q Consensus 3 GiGKTTLa-~vy~~ 15 (715)
|.||||++ .+...
T Consensus 25 GaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 25 GAGKTTFVRGLARA 38 (123)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999 77764
No 442
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=62.21 E-value=18 Score=39.64 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.8
Q ss_pred cCCeEEEEEeCccCChH
Q 005085 71 QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~ 87 (715)
+++.+|+|+||+.|--+
T Consensus 251 ~G~~Vll~~DslTr~A~ 267 (440)
T TIGR01026 251 QGKDVLLLMDSVTRFAM 267 (440)
T ss_pred CCCCEEEEEeChHHHHH
Confidence 58999999999985433
No 443
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=62.11 E-value=4.7 Score=37.34 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=13.2
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
.|+||||++ .+..+..
T Consensus 1 ~GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 499999999 8887644
No 444
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=62.10 E-value=7.9 Score=39.47 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=20.3
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEe
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMAN 28 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~ 28 (715)
+|+|||||+ ++...++++. .++-|..
T Consensus 10 ~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 10 KATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 699999999 9999887776 4555553
No 445
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=61.98 E-value=5.1 Score=36.09 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|+|||||+ .+.......
T Consensus 7 psGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CCCCCHHHHHHHHHhcCCcc
Confidence 4699999999 777654433
No 446
>PRK13948 shikimate kinase; Provisional
Probab=61.90 E-value=5.1 Score=38.14 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|.|+||||++ .+.++.
T Consensus 18 ~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 18 FMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 6799999999 887764
No 447
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=61.89 E-value=7.6 Score=40.21 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=13.9
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+.++
T Consensus 9 GGvGKTT~a~nLA~~La~~ 27 (296)
T TIGR02016 9 GGSGKSFTTTNLSHMMAEM 27 (296)
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 999999999 766654443
No 448
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=61.86 E-value=5.7 Score=36.69 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.6
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|+|||||+ ++...++.+
T Consensus 7 ~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 7 PKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 3599999999 998877654
No 449
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=61.79 E-value=16 Score=36.93 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCcHHHHH-HHHHHhhcc-CCceEEEEecchhhhcCCcHHHHHHHHHHHHhCC
Q 005085 2 GGIGKTTIG-VVFNQFSQK-FEGKYFMANVREESEKCGVLVHLRNQVLSKVLGE 53 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~-F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~ 53 (715)
+|+||||+| ++..++..+ -..++|++ .- .. ..++...+++.....
T Consensus 28 pg~GKT~~~l~ia~~~a~~~~~~vly~S-lE-----m~-~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 28 PGVGKTAFALQIALNAALNGGYPVLYFS-LE-----MS-EEELAARLLARLSGV 74 (259)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSEEEEEE-SS-----S--HHHHHHHHHHHHHTS
T ss_pred ccCCchHHHHHHHHHHHHhcCCeEEEEc-CC-----CC-HHHHHHHHHHHhhcc
Confidence 799999999 777765443 36677776 21 12 566777777666443
No 450
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=61.74 E-value=5.5 Score=37.15 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|.||||+| .+..+.
T Consensus 3 ~sGsGKSTla~~la~~l 19 (163)
T PRK11545 3 VSGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 4699999999 888775
No 451
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=61.69 E-value=7.5 Score=40.83 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.3
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+......
T Consensus 103 GGvGkTT~a~nLA~~la~ 120 (322)
T TIGR03815 103 GGAGASTLAAALALAAAR 120 (322)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999 76665443
No 452
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=61.67 E-value=16 Score=35.84 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=11.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|.||||++ .+-..+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 5799999887 555544
No 453
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=61.57 E-value=17 Score=39.44 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=14.1
Q ss_pred cCCeEEEEEeCccCChHH
Q 005085 71 QRMKVFIVLDDVNKDKTI 88 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~~~v 88 (715)
+++.+|+++||+.|--+.
T Consensus 225 ~G~~Vll~~Dsltr~A~A 242 (411)
T TIGR03496 225 QGKDVLLLMDSLTRFAMA 242 (411)
T ss_pred CCCCEEEEEeChHHHHHH
Confidence 589999999999854333
No 454
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.56 E-value=20 Score=38.17 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=17.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+||||++ .+......+-..+.+|.
T Consensus 214 ptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3699999999 77765544333445554
No 455
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=61.49 E-value=28 Score=36.08 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=42.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhc--CCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhc-----
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEK--CGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQ----- 71 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~----- 71 (715)
+.|.|||+|. .+-.+ .+.|.....++..-..... .- ++.|.+|+..+.........+. +....+-..|+
T Consensus 57 prgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~a-l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~ 134 (408)
T KOG2228|consen 57 PRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIA-LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDET 134 (408)
T ss_pred cCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHH-HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCC
Confidence 4699999998 44433 3444444444434333221 12 4566666655554432222222 33334444442
Q ss_pred -CCeEEEEEeCcc
Q 005085 72 -RMKVFIVLDDVN 83 (715)
Q Consensus 72 -~kr~LlVLDDv~ 83 (715)
+-++..|+|.++
T Consensus 135 t~~~ViFIldEfD 147 (408)
T KOG2228|consen 135 TSGKVIFILDEFD 147 (408)
T ss_pred CCceEEEEeehhh
Confidence 346888899887
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=61.46 E-value=5.1 Score=38.60 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=12.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
..|+|||||| .+...+
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 3799999999 776654
No 457
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.37 E-value=17 Score=34.53 Aligned_cols=30 Identities=13% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCcHHHHH--HHHHHhhccCCceEEEEecchh
Q 005085 3 GIGKTTIG--VVFNQFSQKFEGKYFMANVREE 32 (715)
Q Consensus 3 GiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~ 32 (715)
|||||+|. ..|+.+.+.|+..|=|.=+++.
T Consensus 32 sVGKTslItRf~yd~fd~~YqATIGiDFlskt 63 (221)
T KOG0094|consen 32 SVGKTSLITRFMYDKFDNTYQATIGIDFLSKT 63 (221)
T ss_pred ccchHHHHHHHHHhhhcccccceeeeEEEEEE
Confidence 79999999 6788888888888766544443
No 458
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=60.87 E-value=5.4 Score=38.00 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLS 48 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~ 48 (715)
-|+||||++ .+++.++..... +.+. .++. ... ..+..++++.
T Consensus 5 DGsGKtT~~~~L~~~l~~~~~~-~~~~--~~~~-~~~-~g~~ir~~l~ 47 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKGYK-VIIT--FPPG-STP-IGELIRELLR 47 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTTEE-EEEE--ESST-SSH-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCc-cccc--CCCC-CCh-HHHHHHHHHh
Confidence 599999999 999987766544 2222 1111 112 4556666665
No 459
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=60.79 E-value=7.8 Score=36.83 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+|||||+ ++..+...+|...+..+
T Consensus 10 psg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 10 PSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp STTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcccccccceeec
Confidence 4699999999 99998888886555554
No 460
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=60.75 E-value=5 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=17.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE 21 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~ 21 (715)
|+|.||||.. +++..+...+.
T Consensus 27 MAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred cCCCCchhHHHHHHHHHhhccC
Confidence 8999999999 88887655544
No 461
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=60.73 E-value=43 Score=34.35 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=44.0
Q ss_pred CeEEEEEeCccCChHHH-HHhCcCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCC-CcchhHHhhhc
Q 005085 73 MKVFIVLDDVNKDKTIL-ERYGTQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKG-NPLALQVLGSS 150 (715)
Q Consensus 73 kr~LlVLDDv~r~~~v~-~~~~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g~~ 150 (715)
-||.+|=-.+.|-.+.. ..+ ..|..++|.+++..+-+...+-......+ .+..+.|++.++| |--|+.++-++
T Consensus 160 trFiLIcnylsrii~pi~SRC---~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVSRC---QKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred eEEEEEcCChhhCChHHHhhH---HHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 44555544444443322 222 35788899999888887777644332221 2557888999988 45666666543
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=60.72 E-value=15 Score=36.41 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCCCcHHHHH-HH-HHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VV-FNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~v-y~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++ |+.++ +=..++|+.
T Consensus 33 ~~GsGKt~l~~~~~~~~~~-~g~~~~y~~ 60 (234)
T PRK06067 33 DHGTGKSVLSQQFVYGALK-QGKKVYVIT 60 (234)
T ss_pred CCCCChHHHHHHHHHHHHh-CCCEEEEEE
Confidence 3799999999 65 55554 345667776
No 463
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=60.40 E-value=12 Score=36.81 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=18.2
Q ss_pred CCCCcHHHHH-H-HHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-V-VFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~-vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||+|| + +|+.+++.=+.+++++
T Consensus 27 ~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 27 PPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp STTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3799999999 5 5565555345667777
No 464
>PRK14532 adenylate kinase; Provisional
Probab=60.12 E-value=5.8 Score=37.87 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.3
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+..+
T Consensus 8 ~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 8 PPAAGKGTQAKRLVEE 23 (188)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5899999999 77654
No 465
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.05 E-value=27 Score=37.55 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
++|+||||++ .+......+=.....+.
T Consensus 249 ptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4899999999 87766554322333443
No 466
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=59.86 E-value=6.2 Score=35.61 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++..+.
T Consensus 7 ~~GsGKst~a~~la~~~ 23 (147)
T cd02020 7 PAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777764
No 467
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=59.84 E-value=7.9 Score=39.09 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=19.1
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+.....+.=..+..|+
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd 35 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVS 35 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEe
Confidence 899999999 77776665545555554
No 468
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=59.77 E-value=10 Score=34.65 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.||+||||++ .+....+.
T Consensus 7 ~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 7 VPGAGKSTLIDALITALRA 25 (148)
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 4899999999 77665443
No 469
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=59.76 E-value=6 Score=38.18 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+..+
T Consensus 11 ~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 11 IPGVGKTSISGYIARH 26 (197)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999 88776
No 470
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=59.70 E-value=17 Score=36.13 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=16.8
Q ss_pred CCCCcHHHHH-HHHHHh-hccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQF-SQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~-~~~F~~~~wv~ 27 (715)
..|.||||+| ++.... ++. ...++++
T Consensus 32 ~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 32 DESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 3699999998 655443 433 4456665
No 471
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=59.68 E-value=6 Score=34.21 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.6
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
.|+|||||. .+...
T Consensus 8 ~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 8 SGVGKTSLIRRLCGG 22 (119)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999 77753
No 472
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=59.65 E-value=8.3 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=13.3
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+...+..
T Consensus 114 GGvGKTT~a~nLA~~La~ 131 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYLAL 131 (387)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999 76665443
No 473
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=59.64 E-value=5.1 Score=39.16 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=16.1
Q ss_pred CCCCcHHHHH-HHHHH-hhccCCceE
Q 005085 1 MGGIGKTTIG-VVFNQ-FSQKFEGKY 24 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~-~~~~F~~~~ 24 (715)
+||+|||||+ ++... +...++..+
T Consensus 13 ~~g~GKTtl~~~l~~~~~~~~~~~t~ 38 (219)
T COG1100 13 DGGVGKTTLLNRLVGDEFPEGYPPTI 38 (219)
T ss_pred CCCccHHHHHHHHhcCcCcccCCCce
Confidence 5899999999 76653 444444443
No 474
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=59.58 E-value=9.6 Score=38.61 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=18.0
Q ss_pred CCCCcHHHHH-HH-HHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VV-FNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~v-y~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++ ++..++ =+.+++++
T Consensus 44 ~pGtGKT~l~~qf~~~~a~~-Ge~vlyis 71 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQASR-GNPVLFVT 71 (259)
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCcEEEEE
Confidence 4799999999 65 444443 44667776
No 475
>PRK09099 type III secretion system ATPase; Provisional
Probab=59.55 E-value=19 Score=39.37 Aligned_cols=15 Identities=13% Similarity=0.541 Sum_probs=12.8
Q ss_pred cCCeEEEEEeCccCC
Q 005085 71 QRMKVFIVLDDVNKD 85 (715)
Q Consensus 71 ~~kr~LlVLDDv~r~ 85 (715)
++|.+|+++||+.|-
T Consensus 251 ~G~~VLl~~DslTr~ 265 (441)
T PRK09099 251 RGLRVLLMMDSLTRF 265 (441)
T ss_pred cCCCEEEeccchhHH
Confidence 489999999999843
No 476
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=59.50 E-value=9 Score=35.65 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=19.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
+|+||||+| .+...++++...+..+
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 799999999 9998877765554444
No 477
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=59.48 E-value=6.2 Score=35.74 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=17.8
Q ss_pred CCCcHHHHH-HHHHHhhc-cCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQ-KFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~-~F~~~~wv~ 27 (715)
-|+|||||+ .+.+.+.+ .+...+...
T Consensus 9 ~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 9 KNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 489999999 99998764 455544544
No 478
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.31 E-value=4.3 Score=46.48 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||++ .+...+
T Consensus 118 P~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 118 PSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777754
No 479
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=59.09 E-value=5.9 Score=35.44 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.2
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
-|.||||++ .+...+
T Consensus 31 lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 499999999 777753
No 480
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=59.08 E-value=83 Score=34.55 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=18.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCc-eEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEG-KYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~-~~wv~ 27 (715)
+-|.|||++| -|-...-..|+. .++..
T Consensus 37 PTGLGKT~IA~~V~~~~l~~~~~kvlfLA 65 (542)
T COG1111 37 PTGLGKTFIAAMVIANRLRWFGGKVLFLA 65 (542)
T ss_pred cCCccHHHHHHHHHHHHHHhcCCeEEEec
Confidence 4699999999 655544445666 45554
No 481
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=59.04 E-value=5.9 Score=37.28 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|.||||+| .+.++.
T Consensus 12 ~~GaGKStl~~~La~~l 28 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 5799999999 877653
No 482
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=58.93 E-value=28 Score=38.12 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCCcHHHHH-HHHHHhh-ccCCceEEEEecchhhhcCCcHHHHHHHHHHHHh
Q 005085 2 GGIGKTTIG-VVFNQFS-QKFEGKYFMANVREESEKCGVLVHLRNQVLSKVL 51 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~-~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~ 51 (715)
+|+||||+| .+...+. .+=..++|++ . + .. ..++...++....
T Consensus 203 pg~GKT~~al~ia~~~a~~~g~~v~~fS-l-E----m~-~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 203 PSMGKTTLALNIAENVALREGKPVLFFS-L-E----MS-AEQLGERLLASKS 247 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEEE-C-C----CC-HHHHHHHHHHHHc
Confidence 799999999 7775543 3333455665 1 1 12 5667777666543
No 483
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=58.90 E-value=7.7 Score=39.18 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=15.5
Q ss_pred CCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 3 GIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 3 GiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||||||++ ++-+..... +.++.+.
T Consensus 4 GvGKTT~~~~l~~~~~~~-~~vl~~p 28 (281)
T PF00693_consen 4 GVGKTTTLKALAEALPAG-DPVLYFP 28 (281)
T ss_dssp TSSHHHHHHHHHHCCTSS-CCEEEE-
T ss_pred CcCHHHHHHHHHHccCCC-CCeEEec
Confidence 99999999 776654433 4444443
No 484
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=58.88 E-value=5.7 Score=39.35 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=17.0
Q ss_pred CCCcHHHHH-HHHHHhh-ccCCceEEEEecchh
Q 005085 2 GGIGKTTIG-VVFNQFS-QKFEGKYFMANVREE 32 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~-~~F~~~~wv~~v~~~ 32 (715)
||+||||.| ++.-.+. .-+...+.=.++.+.
T Consensus 10 GGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~ 42 (261)
T PF09140_consen 10 GGVGKSTVAVNLAVALARMGKKVGLLDLDIRQP 42 (261)
T ss_dssp TTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 999999999 7776543 334444333334443
No 485
>PRK14530 adenylate kinase; Provisional
Probab=58.80 E-value=6.3 Score=38.60 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| .+....
T Consensus 11 ~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 11 APGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5899999999 776653
No 486
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=58.52 E-value=17 Score=38.78 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=39.1
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhcCCeEEEEEe
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQKIPQYIRDRLQRMKVFIVLD 80 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD 80 (715)
-|.|||.|+ ..|+.+...=..++-.. .++.++.+.+-.-.+.. +....+.+.+.++..||.+|
T Consensus 71 vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~~~~-------~~l~~va~~l~~~~~lLcfD 134 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLRGQD-------DPLPQVADELAKESRLLCFD 134 (362)
T ss_pred CCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHhCCC-------ccHHHHHHHHHhcCCEEEEe
Confidence 589999999 99986543212221111 11444444443322111 45667777888888899999
Q ss_pred Ccc
Q 005085 81 DVN 83 (715)
Q Consensus 81 Dv~ 83 (715)
...
T Consensus 135 EF~ 137 (362)
T PF03969_consen 135 EFQ 137 (362)
T ss_pred eee
Confidence 876
No 487
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.45 E-value=35 Score=34.66 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=9.3
Q ss_pred CCCCcHHHHH
Q 005085 1 MGGIGKTTIG 10 (715)
Q Consensus 1 mgGiGKTTLa 10 (715)
+||+||+|+|
T Consensus 39 ~~GsGr~sl~ 48 (268)
T PF12780_consen 39 VGGSGRQSLA 48 (268)
T ss_dssp TTTSCHHHHH
T ss_pred CCCccHHHHH
Confidence 5899999999
No 488
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=58.27 E-value=5.5 Score=35.91 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+|||||+ ++++.
T Consensus 4 ~~gsGKstl~~~l~~~ 19 (163)
T cd00880 4 RTNAGKSSLLNALLGQ 19 (163)
T ss_pred CCCCCHHHHHHHHhCc
Confidence 4799999999 88763
No 489
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=58.15 E-value=10 Score=36.23 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.7
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+-|+||||+| .+.+....
T Consensus 8 ~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 8 IDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3699999999 88887654
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=58.06 E-value=6.6 Score=37.53 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| .+..+
T Consensus 7 ~pGsGKst~a~~La~~ 22 (194)
T cd01428 7 PPGSGKGTQAERLAKK 22 (194)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5799999999 77665
No 491
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.97 E-value=31 Score=37.16 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhc---C-CeEE
Q 005085 3 GIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQ---R-MKVF 76 (715)
Q Consensus 3 GiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~---~-kr~L 76 (715)
|.||||-| ++.+.+++ ....+-+. ..+.|. +. +.+=++++..+++..-...... +..+..++.++ . .-=+
T Consensus 110 GsGKTTt~~KLA~~lkk-~~~kvllV-aaD~~R-pA-A~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~Dv 185 (451)
T COG0541 110 GSGKTTTAGKLAKYLKK-KGKKVLLV-AADTYR-PA-AIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDV 185 (451)
T ss_pred CCChHhHHHHHHHHHHH-cCCceEEE-ecccCC-hH-HHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 89999999 88887766 44444443 223332 22 3333456666665544332222 33333333332 2 2235
Q ss_pred EEEeCccCC----------hHHHHHhCcC-cEEEcCCCCHHHHHHH
Q 005085 77 IVLDDVNKD----------KTILERYGTQ-RIYEVEGLNCNEVLRL 111 (715)
Q Consensus 77 lVLDDv~r~----------~~v~~~~~~~-~~~~l~~L~~~es~~L 111 (715)
+|+|=..|. ..|......+ ..+-++.+.-.+|...
T Consensus 186 vIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 186 VIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred EEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 555666532 1222222222 3455566666666543
No 492
>PRK04328 hypothetical protein; Provisional
Probab=57.86 E-value=18 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=19.0
Q ss_pred CCCCcHHHHH-H-HHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-V-VFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~-vy~~~~~~F~~~~wv~ 27 (715)
.+|.|||||| + +|+.+++ -+..+|++
T Consensus 31 ~pGsGKT~l~~~fl~~~~~~-ge~~lyis 58 (249)
T PRK04328 31 GPGTGKSIFSQQFLWNGLQM-GEPGVYVA 58 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 3799999999 5 5555544 56778887
No 493
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=57.77 E-value=6.7 Score=36.73 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|.|+||||+| .+.++.
T Consensus 10 ~~GsGKst~~~~la~~l 26 (171)
T PRK03731 10 ARGCGKTTVGMALAQAL 26 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 887764
No 494
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=57.70 E-value=23 Score=39.91 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHH--------------HHhCCCCCCCCC-cchHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLS--------------KVLGENFDIGTQ-KIPQY 65 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~--------------~~~~~~~~~~~~-~~~~~ 65 (715)
+|+|||++| ++.......=+.++|++ ..+. ..++.+.+.. .+.......... +....
T Consensus 282 ~G~GKT~l~~~~~~~~~~~g~~~~yis-~e~~------~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 354 (509)
T PRK09302 282 TGTGKTLLASKFAEAACRRGERCLLFA-FEES------RAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHLII 354 (509)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEE-ecCC------HHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHHHHH
Q ss_pred HHHHhcC-CeEEEEEeCc
Q 005085 66 IRDRLQR-MKVFIVLDDV 82 (715)
Q Consensus 66 l~~~L~~-kr~LlVLDDv 82 (715)
+.+.++. +.-++|+|.+
T Consensus 355 i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 355 IKREIEEFKPSRVAIDPL 372 (509)
T ss_pred HHHHHHHcCCCEEEEcCH
No 495
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=57.52 E-value=9.5 Score=39.05 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.9
Q ss_pred CCCcHHHHH-HHHHHhhccCCceE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKY 24 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~ 24 (715)
+|.|||||+ ++.+.++......+
T Consensus 113 pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 113 PGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred CCCCHHHHHHHHHHHhccCCCEEE
Confidence 699999999 99888776654433
No 496
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=56.93 E-value=24 Score=38.55 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-c--------chHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-K--------IPQYIR 67 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~--------~~~~l~ 67 (715)
.|+|||||. .+...... +..+.+. +.+.. .+ +.+..++.......... ...+. . ....+.
T Consensus 154 sG~GKStLl~~I~~~~~~--~~~vi~~-iG~~~--~e-v~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~A 227 (422)
T TIGR02546 154 AGVGKSTLLGMIARGASA--DVNVIAL-IGERG--RE-VREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIA 227 (422)
T ss_pred CCCChHHHHHHHhCCCCC--CEEEEEE-EccCC--cC-HHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHH
Confidence 699999999 77775432 2333332 22211 23 44454444332211110 11111 0 122233
Q ss_pred HHh--cCCeEEEEEeCccCChH
Q 005085 68 DRL--QRMKVFIVLDDVNKDKT 87 (715)
Q Consensus 68 ~~L--~~kr~LlVLDDv~r~~~ 87 (715)
+++ +++++|+|+||+.|--+
T Consensus 228 E~f~~~g~~Vl~~~Dsltr~a~ 249 (422)
T TIGR02546 228 EYFRDQGKRVLLMMDSLTRFAR 249 (422)
T ss_pred HHHHHCCCcEEEEEeCchHHHH
Confidence 444 47899999999984433
No 497
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.67 E-value=12 Score=34.54 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=32.5
Q ss_pred HHHHhc-CCeEEEEEeCccCChHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcC------CCCCChhHHHHHHHH
Q 005085 66 IRDRLQ-RMKVFIVLDDVNKDKTILERYGTQRIYEVEGLNCNEVLRLFSSCAFK------ENHCPEDLLKHSETA 133 (715)
Q Consensus 66 l~~~L~-~kr~LlVLDDv~r~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~------~~~~~~~~~~~~~~i 133 (715)
.++.+. ++-=|||||++- ..+....++.++-.+++.++.-. ....++.+.+.|.-|
T Consensus 87 a~~~~~~~~~dLlVLDEi~------------~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 87 AKEAIASGEYDLVILDEIN------------YALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHHhcCCCCEEEEechH------------hHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 344443 455699999874 12345567788888877765422 233455555555443
No 498
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=56.56 E-value=9.5 Score=41.44 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.0
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||.| .+...+.
T Consensus 131 GGvGKTTta~nLA~~LA 147 (405)
T PRK13869 131 GGSGKTTTSAHLAQYLA 147 (405)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 999999999 7666544
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=56.46 E-value=7.3 Score=29.62 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.0
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
-|.|||||. ++.-
T Consensus 32 nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 32 NGSGKSTLLDAIQT 45 (62)
T ss_pred CCCCHHHHHHHHHH
Confidence 599999998 5543
No 500
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=56.39 E-value=7.5 Score=38.53 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.9
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|.|||||+ .+...++..
T Consensus 41 ~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 41 PPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCCHHHHHHHHHHHhhhc
Confidence 4799999999 888765543
Done!