Query 005085
Match_columns 715
No_of_seqs 702 out of 4604
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-28 7.7E-33 275.2 19.4 223 1-230 160-472 (549)
2 3rgz_A Protein brassinosteroid 100.0 1.7E-28 6E-33 288.2 18.9 246 264-511 299-555 (768)
3 3rgz_A Protein brassinosteroid 100.0 2.2E-28 7.4E-33 287.4 19.6 305 263-570 322-715 (768)
4 4eco_A Uncharacterized protein 100.0 3.5E-28 1.2E-32 279.2 18.8 304 260-569 82-523 (636)
5 3v47_A TOLL-like receptor 5B a 100.0 1.2E-27 4.2E-32 264.1 22.0 305 263-571 34-407 (455)
6 4ecn_A Leucine-rich repeat pro 100.0 2.7E-27 9.2E-32 276.9 23.0 299 263-571 495-839 (876)
7 4eco_A Uncharacterized protein 99.9 7.7E-28 2.6E-32 276.4 17.3 300 263-571 253-599 (636)
8 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-26 5.9E-31 259.4 27.1 295 263-569 25-454 (520)
9 4ecn_A Leucine-rich repeat pro 99.9 1.6E-26 5.5E-31 270.3 21.3 263 301-569 440-763 (876)
10 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-26 1.8E-30 260.4 24.6 144 424-569 351-507 (606)
11 3o6n_A APL1; leucine-rich repe 99.9 1.4E-25 4.8E-30 242.4 24.1 290 263-570 49-350 (390)
12 3t6q_A CD180 antigen; protein- 99.9 3.1E-25 1.1E-29 254.1 28.1 303 263-570 61-436 (606)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-25 6.2E-30 253.5 25.6 301 263-574 56-487 (562)
14 2z81_A CD282 antigen, TOLL-lik 99.9 6.9E-26 2.4E-30 256.3 20.9 303 263-574 30-465 (549)
15 3oja_B Anopheles plasmodium-re 99.9 2E-25 6.9E-30 254.7 24.7 292 263-570 55-356 (597)
16 3t6q_A CD180 antigen; protein- 99.9 1.6E-25 5.4E-30 256.5 23.6 305 262-570 36-411 (606)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-25 6.1E-30 251.2 22.1 294 263-574 4-435 (520)
18 4fmz_A Internalin; leucine ric 99.9 6E-25 2.1E-29 233.5 24.7 285 264-570 49-344 (347)
19 3j0a_A TOLL-like receptor 5; m 99.9 6.3E-25 2.1E-29 260.6 25.6 300 263-569 28-411 (844)
20 2id5_A Lingo-1, leucine rich r 99.9 7E-25 2.4E-29 243.6 23.7 281 283-571 32-332 (477)
21 3v47_A TOLL-like receptor 5B a 99.9 4.1E-25 1.4E-29 243.8 21.4 285 263-549 58-409 (455)
22 2id5_A Lingo-1, leucine rich r 99.9 4E-25 1.4E-29 245.5 21.3 285 263-549 36-334 (477)
23 4fcg_A Uncharacterized protein 99.9 2.7E-25 9.3E-30 233.9 17.5 215 311-528 83-311 (328)
24 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-26 2E-30 237.5 12.3 238 310-549 51-306 (313)
25 4fcg_A Uncharacterized protein 99.9 3.5E-25 1.2E-29 233.0 18.1 221 283-510 81-316 (328)
26 3vq2_A TLR4, TOLL-like recepto 99.9 6.7E-25 2.3E-29 251.3 22.0 261 305-573 281-559 (606)
27 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-25 3.2E-29 230.5 21.4 277 283-570 33-331 (332)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-24 5.5E-29 245.7 24.8 295 262-574 34-464 (562)
29 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-24 9.4E-29 255.1 27.2 298 263-569 52-436 (844)
30 2z63_A TOLL-like receptor 4, v 99.9 1.2E-24 4.2E-29 247.2 23.0 300 263-569 32-504 (570)
31 3o6n_A APL1; leucine-rich repe 99.9 1.8E-24 6.3E-29 233.6 23.3 272 263-549 73-353 (390)
32 4fmz_A Internalin; leucine ric 99.9 3E-24 1E-28 228.0 24.4 269 263-548 70-346 (347)
33 1xku_A Decorin; proteoglycan, 99.9 2.9E-24 9.9E-29 226.5 23.0 275 284-569 32-329 (330)
34 3oja_B Anopheles plasmodium-re 99.9 2.1E-24 7.3E-29 246.2 23.1 273 263-549 79-359 (597)
35 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-25 6.1E-30 233.8 10.7 229 302-532 69-305 (313)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-23 5.9E-28 230.1 27.0 279 263-569 46-349 (457)
37 2z81_A CD282 antigen, TOLL-lik 99.9 4.9E-24 1.7E-28 241.1 23.2 296 263-569 54-483 (549)
38 1o6v_A Internalin A; bacterial 99.9 1.2E-23 4.3E-28 232.6 24.9 284 264-570 73-364 (466)
39 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-23 8.1E-28 241.8 26.5 145 424-569 249-415 (680)
40 1o6v_A Internalin A; bacterial 99.9 4.3E-23 1.5E-27 228.3 24.5 284 263-570 94-386 (466)
41 1ziw_A TOLL-like receptor 3; i 99.9 2.7E-23 9.3E-28 241.2 23.3 306 263-570 29-392 (680)
42 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-22 4E-27 223.4 25.7 265 263-549 68-353 (457)
43 1xku_A Decorin; proteoglycan, 99.9 1.1E-22 3.8E-27 214.4 23.7 271 264-546 36-330 (330)
44 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-22 8.3E-27 231.1 25.5 305 263-572 56-580 (635)
45 2ft3_A Biglycan; proteoglycan, 99.9 2E-22 6.7E-27 212.7 21.4 270 264-546 38-331 (332)
46 2z63_A TOLL-like receptor 4, v 99.9 1.1E-22 3.7E-27 231.1 20.3 304 263-573 56-532 (570)
47 1jl5_A Outer protein YOPM; leu 99.9 2.3E-21 8E-26 212.9 27.6 271 263-569 75-367 (454)
48 3zyi_A Leucine-rich repeat-con 99.9 3.3E-22 1.1E-26 220.3 20.1 223 309-533 75-305 (452)
49 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-21 5.1E-26 221.2 25.9 254 283-574 40-298 (622)
50 2z66_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 208.6 18.2 234 312-570 10-259 (306)
51 3zyj_A Leucine-rich repeat-con 99.9 6.2E-22 2.1E-26 217.3 21.0 223 309-533 64-294 (440)
52 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-22 8E-27 207.2 16.4 239 309-569 32-284 (285)
53 1jl5_A Outer protein YOPM; leu 99.9 2.8E-21 9.4E-26 212.3 25.1 247 283-559 131-382 (454)
54 3sfz_A APAF-1, apoptotic pepti 99.9 2.3E-22 8E-27 249.4 16.7 222 1-229 155-452 (1249)
55 2z80_A TOLL-like receptor 2, v 99.9 4.3E-22 1.5E-26 212.0 16.3 240 309-574 52-316 (353)
56 3zyi_A Leucine-rich repeat-con 99.9 4.1E-21 1.4E-25 211.5 21.7 235 310-570 55-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 5.9E-21 2E-25 209.5 22.2 235 310-570 44-290 (440)
58 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.9E-27 215.0 9.5 257 264-549 36-315 (353)
59 2z66_A Variable lymphocyte rec 99.9 9E-22 3.1E-26 205.1 14.1 219 309-549 28-262 (306)
60 3g06_A SSPH2 (leucine-rich rep 99.9 5E-20 1.7E-24 208.6 25.5 248 263-549 44-298 (622)
61 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-20 8.8E-25 214.1 22.0 283 263-549 80-581 (635)
62 3rfs_A Internalin B, repeat mo 99.8 1.7E-21 5.9E-26 199.2 10.3 224 313-561 23-247 (272)
63 1wwl_A Monocyte differentiatio 99.8 2.9E-22 9.8E-27 209.4 3.9 240 279-530 39-308 (312)
64 1vt4_I APAF-1 related killer D 99.8 2.2E-21 7.7E-26 221.6 11.4 208 1-222 158-436 (1221)
65 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-21 8E-26 202.9 9.5 56 309-365 34-90 (317)
66 1ozn_A Reticulon 4 receptor; N 99.8 8.2E-21 2.8E-25 195.7 12.7 217 264-506 16-237 (285)
67 1wwl_A Monocyte differentiatio 99.8 3.7E-22 1.3E-26 208.6 2.3 240 309-570 43-307 (312)
68 2z62_A TOLL-like receptor 4, v 99.8 2.4E-20 8.2E-25 191.2 15.0 209 309-539 28-245 (276)
69 2z62_A TOLL-like receptor 4, v 99.8 5.5E-20 1.9E-24 188.5 17.4 214 313-549 11-238 (276)
70 3oja_A Leucine-rich immune mol 99.8 1.1E-20 3.7E-25 209.6 12.6 189 310-530 35-226 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-20 6.1E-25 196.3 11.3 208 309-527 58-271 (317)
72 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-21 3.8E-26 216.6 1.1 301 276-578 49-416 (461)
73 2o6q_A Variable lymphocyte rec 99.8 2.7E-19 9.3E-24 182.7 18.7 200 310-533 17-220 (270)
74 1p9a_G Platelet glycoprotein I 99.8 1.7E-19 5.6E-24 186.1 17.1 195 309-529 10-206 (290)
75 3oja_A Leucine-rich immune mol 99.8 6E-20 2.1E-24 203.6 13.3 211 329-572 31-250 (487)
76 1z6t_A APAF-1, apoptotic prote 99.8 8.2E-20 2.8E-24 208.2 13.2 218 1-226 155-449 (591)
77 1z7x_W Ribonuclease inhibitor; 99.8 5.9E-22 2E-26 218.9 -5.0 309 263-574 7-384 (461)
78 2ast_B S-phase kinase-associat 99.8 2.2E-20 7.5E-25 197.2 5.5 227 309-557 70-314 (336)
79 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 4.2E-23 179.5 17.7 195 328-548 6-208 (290)
80 2xwt_C Thyrotropin receptor; s 99.8 1.3E-18 4.5E-23 174.2 15.7 198 309-529 31-237 (239)
81 1h6u_A Internalin H; cell adhe 99.8 1.2E-18 4E-23 181.5 15.3 187 309-528 41-227 (308)
82 2xwt_C Thyrotropin receptor; s 99.8 1.5E-18 5.2E-23 173.7 14.9 201 320-545 22-236 (239)
83 1h6u_A Internalin H; cell adhe 99.8 1.3E-18 4.5E-23 181.1 14.9 189 329-549 38-231 (308)
84 2o6q_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 172.4 19.1 193 332-549 16-219 (270)
85 4glp_A Monocyte differentiatio 99.8 6.4E-19 2.2E-23 183.8 11.7 80 467-549 221-308 (310)
86 3rfs_A Internalin B, repeat mo 99.8 2.9E-18 9.8E-23 175.2 16.1 208 280-519 38-247 (272)
87 4ay9_X Follicle-stimulating ho 99.8 9E-18 3.1E-22 178.2 18.9 215 309-527 30-255 (350)
88 2ca6_A RAN GTPase-activating p 99.8 2.8E-19 9.4E-24 192.7 4.6 233 305-549 28-317 (386)
89 2ca6_A RAN GTPase-activating p 99.8 6E-20 2.1E-24 197.9 -0.6 244 311-574 11-318 (386)
90 3m19_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 165.1 17.1 179 309-533 14-194 (251)
91 4glp_A Monocyte differentiatio 99.7 5.6E-18 1.9E-22 176.6 10.3 219 309-532 64-308 (310)
92 2ast_B S-phase kinase-associat 99.7 7.8E-19 2.7E-23 185.3 2.5 235 275-536 60-311 (336)
93 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.8E-21 168.3 18.9 212 312-531 12-236 (350)
94 3m19_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 161.0 16.6 122 427-549 63-193 (251)
95 3ogk_B Coronatine-insensitive 99.7 8.4E-19 2.9E-23 200.0 0.4 295 278-574 187-527 (592)
96 3goz_A Leucine-rich repeat-con 99.7 3.1E-18 1E-22 182.7 3.1 241 314-570 3-295 (362)
97 3cvr_A Invasion plasmid antige 99.7 1.5E-16 5.1E-21 178.0 16.3 186 310-517 60-253 (571)
98 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.1E-23 197.2 0.8 197 375-575 266-503 (592)
99 3goz_A Leucine-rich repeat-con 99.7 4E-18 1.4E-22 181.9 0.7 82 309-390 22-120 (362)
100 2o6s_A Variable lymphocyte rec 99.7 2.1E-16 7.3E-21 154.4 12.5 133 427-561 56-190 (208)
101 2p1m_B Transport inhibitor res 99.7 3.7E-18 1.3E-22 194.7 -0.5 297 277-578 123-524 (594)
102 2o6s_A Variable lymphocyte rec 99.7 8.5E-16 2.9E-20 150.1 15.4 179 312-519 10-190 (208)
103 1h6t_A Internalin B; cell adhe 99.6 3.9E-16 1.3E-20 160.9 11.9 169 331-531 45-213 (291)
104 3cvr_A Invasion plasmid antige 99.6 5.6E-16 1.9E-20 173.3 13.7 188 284-495 60-255 (571)
105 1m9s_A Internalin B; cell inva 99.6 2E-16 6.9E-21 178.9 9.1 164 330-504 41-207 (605)
106 1h6t_A Internalin B; cell adhe 99.6 9.2E-16 3.2E-20 158.1 12.4 172 347-549 38-214 (291)
107 4ezg_A Putative uncharacterize 99.6 1.8E-15 6E-20 146.5 12.8 102 427-531 92-194 (197)
108 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.5E-20 147.4 11.2 95 309-405 44-138 (197)
109 1dce_A Protein (RAB geranylger 99.6 9.9E-18 3.4E-22 188.5 -4.8 186 351-542 345-567 (567)
110 1m9s_A Internalin B; cell inva 99.6 2.3E-15 7.9E-20 170.2 11.4 185 279-496 39-223 (605)
111 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 143.5 15.2 152 311-485 21-174 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 1.5E-14 5.1E-19 142.5 13.5 150 312-483 14-166 (220)
113 1dce_A Protein (RAB geranylger 99.6 1.3E-17 4.5E-22 187.5 -10.6 202 309-525 349-567 (567)
114 2xot_A Amphoterin-induced prot 99.6 1.9E-14 6.4E-19 153.2 14.3 171 312-504 21-199 (361)
115 2v9t_B SLIT homolog 2 protein 99.6 2.8E-14 9.6E-19 140.5 14.3 148 312-482 14-164 (220)
116 2p1m_B Transport inhibitor res 99.6 1.7E-16 5.9E-21 180.8 -2.0 268 281-549 182-520 (594)
117 1xeu_A Internalin C; cellular 99.5 4.7E-15 1.6E-19 150.4 8.1 164 309-504 19-182 (263)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 3.8E-14 1.3E-18 139.6 12.9 103 427-530 61-165 (220)
119 3e6j_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 138.6 14.9 126 423-549 40-173 (229)
120 2v9t_B SLIT homolog 2 protein 99.5 4.1E-14 1.4E-18 139.3 12.6 122 427-548 36-165 (220)
121 1xeu_A Internalin C; cellular 99.5 6.4E-15 2.2E-19 149.4 5.6 165 331-528 18-182 (263)
122 2xot_A Amphoterin-induced prot 99.5 4.4E-14 1.5E-18 150.3 12.2 174 335-532 21-203 (361)
123 4b8c_D Glucose-repressible alc 99.5 9.3E-15 3.2E-19 169.4 5.5 139 351-512 220-359 (727)
124 2ell_A Acidic leucine-rich nuc 99.5 5.7E-14 1.9E-18 132.0 9.1 130 422-556 23-166 (168)
125 4b8c_D Glucose-repressible alc 99.4 1.6E-14 5.6E-19 167.3 2.6 191 311-530 203-403 (727)
126 2ell_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 125.9 10.8 81 309-390 24-106 (168)
127 2je0_A Acidic leucine-rich nuc 99.4 4.5E-13 1.5E-17 123.1 9.0 118 423-543 17-148 (149)
128 2je0_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 122.3 8.8 128 378-527 16-149 (149)
129 1w8a_A SLIT protein; signaling 99.4 1.5E-12 5.1E-17 125.2 11.5 110 424-533 30-141 (192)
130 2wfh_A SLIT homolog 2 protein 99.4 2.1E-12 7.3E-17 124.1 11.6 107 423-530 31-138 (193)
131 1w8a_A SLIT protein; signaling 99.3 4.2E-12 1.4E-16 122.0 12.4 129 312-486 11-142 (192)
132 2wfh_A SLIT homolog 2 protein 99.3 5.8E-12 2E-16 121.1 11.4 120 426-549 13-140 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 120.9 8.4 102 426-530 22-125 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 120.3 7.9 99 427-528 46-150 (176)
135 2o6r_A Variable lymphocyte rec 99.3 2.1E-11 7.3E-16 115.3 12.5 102 426-530 10-112 (177)
136 2o6r_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 117.7 9.6 116 423-539 28-145 (177)
137 3sb4_A Hypothetical leucine ri 99.3 2.4E-11 8.1E-16 127.4 12.7 189 331-524 100-327 (329)
138 3g39_A Variable lymphocyte rec 99.2 1.9E-11 6.4E-16 114.9 8.5 108 425-535 11-119 (170)
139 2r9u_A Variable lymphocyte rec 99.2 2.6E-11 8.8E-16 114.4 8.6 104 426-532 15-119 (174)
140 1ds9_A Outer arm dynein; leuci 99.2 3.1E-13 1.1E-17 130.7 -6.0 99 427-530 52-152 (198)
141 1ds9_A Outer arm dynein; leuci 99.2 6E-13 2E-17 128.7 -5.2 120 320-463 36-157 (198)
142 4fdw_A Leucine rich hypothetic 99.0 7.5E-09 2.6E-13 111.0 19.5 205 310-528 136-355 (401)
143 3sb4_A Hypothetical leucine ri 99.0 3.7E-09 1.3E-13 110.6 14.3 189 308-501 100-328 (329)
144 2r9u_A Variable lymphocyte rec 98.9 3.1E-09 1E-13 100.0 9.9 89 423-512 33-122 (174)
145 2ifg_A High affinity nerve gro 98.9 2.5E-09 8.7E-14 112.7 10.2 105 427-533 12-118 (347)
146 3g39_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 98.2 9.9 94 311-406 11-105 (170)
147 4fdw_A Leucine rich hypothetic 98.8 1E-07 3.5E-12 102.2 18.2 238 271-527 124-379 (401)
148 3un9_A NLR family member X1; l 98.8 1.4E-09 5E-14 115.4 2.0 86 445-531 154-252 (372)
149 3un9_A NLR family member X1; l 98.8 1E-09 3.5E-14 116.6 0.8 125 424-549 102-253 (372)
150 2ifg_A High affinity nerve gro 98.6 8.5E-08 2.9E-12 100.9 9.5 62 442-504 52-113 (347)
151 2ra8_A Uncharacterized protein 98.5 5.9E-08 2E-12 102.2 5.1 62 468-530 250-319 (362)
152 2ra8_A Uncharacterized protein 98.5 1.5E-07 5.1E-12 99.1 7.0 141 326-504 166-317 (362)
153 4fs7_A Uncharacterized protein 98.3 1.2E-05 4.3E-10 85.8 16.7 217 274-503 153-375 (394)
154 4fs7_A Uncharacterized protein 98.2 2.6E-05 9E-10 83.3 17.0 65 271-340 59-125 (394)
155 1w5s_A Origin recognition comp 98.1 1.1E-05 3.7E-10 86.8 12.1 140 1-148 60-266 (412)
156 3e4g_A ATP synthase subunit S, 98.1 2.9E-06 1E-10 78.5 6.1 96 438-533 53-154 (176)
157 2fna_A Conserved hypothetical 98.1 1.2E-05 4.1E-10 84.4 11.0 53 96-152 202-254 (357)
158 4gt6_A Cell surface protein; l 98.1 0.0001 3.4E-09 78.7 18.3 100 442-546 261-368 (394)
159 2qen_A Walker-type ATPase; unk 98.0 3.4E-05 1.2E-09 80.7 13.8 54 96-151 196-249 (350)
160 2qby_B CDC6 homolog 3, cell di 98.0 0.00017 5.9E-09 76.5 17.6 159 1-166 53-270 (384)
161 3e4g_A ATP synthase subunit S, 98.0 5.5E-06 1.9E-10 76.7 5.0 39 470-508 61-99 (176)
162 1io0_A Tropomodulin; LRR prote 98.0 5.1E-06 1.7E-10 78.6 4.8 106 442-548 32-164 (185)
163 1io0_A Tropomodulin; LRR prote 97.9 4.8E-06 1.6E-10 78.8 3.9 107 423-530 36-163 (185)
164 3rw6_A Nuclear RNA export fact 97.8 3.6E-06 1.2E-10 84.0 1.2 79 428-508 148-234 (267)
165 3rw6_A Nuclear RNA export fact 97.8 7.8E-06 2.7E-10 81.5 3.1 62 468-531 168-233 (267)
166 1njg_A DNA polymerase III subu 97.8 0.00016 5.3E-09 71.0 12.3 53 96-150 178-230 (250)
167 4gt6_A Cell surface protein; l 97.7 0.0016 5.6E-08 69.2 20.4 60 465-527 260-320 (394)
168 2v1u_A Cell division control p 97.7 0.00053 1.8E-08 72.6 15.6 158 1-166 52-276 (387)
169 2qby_A CDC6 homolog 1, cell di 97.6 0.00021 7.3E-09 75.7 11.2 136 1-144 53-241 (386)
170 4h09_A Hypothetical leucine ri 97.6 0.0029 1E-07 66.8 19.4 241 271-526 57-318 (379)
171 4h09_A Hypothetical leucine ri 97.4 0.021 7.1E-07 60.1 23.3 98 442-543 213-318 (379)
172 2chg_A Replication factor C sm 97.4 0.00042 1.4E-08 66.9 8.4 50 96-147 154-203 (226)
173 1fnn_A CDC6P, cell division co 97.3 0.0023 7.9E-08 67.7 14.6 136 1-144 52-243 (389)
174 2z4s_A Chromosomal replication 96.9 0.0032 1.1E-07 67.9 10.4 22 1-22 138-160 (440)
175 3te6_A Regulatory protein SIR3 96.6 0.013 4.3E-07 59.8 11.7 80 1-83 53-142 (318)
176 3bos_A Putative DNA replicatio 96.6 0.0075 2.6E-07 58.8 9.9 58 86-146 157-215 (242)
177 1sxj_B Activator 1 37 kDa subu 96.6 0.0031 1E-07 64.8 7.3 51 96-148 159-210 (323)
178 1l8q_A Chromosomal replication 96.3 0.031 1.1E-06 57.4 13.1 51 86-141 150-201 (324)
179 2w58_A DNAI, primosome compone 96.3 0.0051 1.7E-07 58.5 6.5 27 1-27 62-89 (202)
180 1iqp_A RFCS; clamp loader, ext 96.0 0.019 6.6E-07 58.8 9.5 51 96-148 162-212 (327)
181 1sxj_A Activator 1 95 kDa subu 95.1 0.026 8.9E-07 62.1 6.9 50 96-148 202-253 (516)
182 1pgv_A TMD-1, tropomodulin TMD 95.1 0.016 5.6E-07 54.4 4.3 15 514-528 122-136 (197)
183 1pgv_A TMD-1, tropomodulin TMD 95.0 0.052 1.8E-06 51.0 7.4 105 424-528 42-167 (197)
184 2chq_A Replication factor C sm 94.8 0.08 2.7E-06 53.9 9.3 49 96-146 154-202 (319)
185 1jr3_A DNA polymerase III subu 94.8 0.082 2.8E-06 55.2 9.5 50 96-148 171-221 (373)
186 3ec2_A DNA replication protein 94.8 0.045 1.5E-06 50.7 6.6 17 1-17 46-63 (180)
187 3rfe_A Platelet glycoprotein I 94.5 0.052 1.8E-06 47.4 5.9 53 427-481 12-66 (130)
188 1d2n_A N-ethylmaleimide-sensit 94.2 0.61 2.1E-05 46.2 13.9 69 95-170 190-265 (272)
189 1hqc_A RUVB; extended AAA-ATPa 93.8 0.19 6.4E-06 51.3 9.5 52 96-149 161-212 (324)
190 1jbk_A CLPB protein; beta barr 93.8 0.11 3.9E-06 47.9 7.1 17 1-17 51-68 (195)
191 3uk6_A RUVB-like 2; hexameric 93.5 0.5 1.7E-05 49.1 12.4 46 97-144 253-299 (368)
192 3pvs_A Replication-associated 93.4 0.43 1.5E-05 51.1 11.7 49 96-144 158-211 (447)
193 3h4m_A Proteasome-activating n 93.4 0.47 1.6E-05 47.3 11.4 42 95-140 180-222 (285)
194 1sxj_D Activator 1 41 kDa subu 93.3 0.25 8.7E-06 51.0 9.5 49 96-147 185-234 (353)
195 3rfe_A Platelet glycoprotein I 93.2 0.078 2.7E-06 46.2 4.6 50 313-365 12-65 (130)
196 2p65_A Hypothetical protein PF 93.1 0.14 4.7E-06 47.2 6.4 18 1-18 51-69 (187)
197 2qp9_X Vacuolar protein sortin 92.7 0.55 1.9E-05 48.6 11.0 17 1-17 92-109 (355)
198 3eie_A Vacuolar protein sortin 92.7 0.44 1.5E-05 48.6 10.1 18 1-18 59-77 (322)
199 1xwi_A SKD1 protein; VPS4B, AA 92.5 0.96 3.3E-05 46.1 12.3 16 1-16 53-69 (322)
200 2qgz_A Helicase loader, putati 92.4 0.079 2.7E-06 53.9 3.9 27 1-27 160-188 (308)
201 1a5t_A Delta prime, HOLB; zinc 92.2 0.84 2.9E-05 46.8 11.5 46 96-148 160-205 (334)
202 4b4t_J 26S protease regulatory 91.8 1.2 4E-05 46.6 11.9 45 93-141 309-354 (405)
203 2vhj_A Ntpase P4, P4; non- hyd 91.8 0.11 3.7E-06 52.6 3.9 59 1-83 131-192 (331)
204 2qz4_A Paraplegin; AAA+, SPG7, 91.6 0.45 1.5E-05 46.7 8.3 46 96-142 170-215 (262)
205 1sxj_E Activator 1 40 kDa subu 91.5 0.84 2.9E-05 47.0 10.7 49 96-146 186-235 (354)
206 3d8b_A Fidgetin-like protein 1 90.7 1.8 6.2E-05 44.7 12.3 49 96-146 244-293 (357)
207 2zan_A Vacuolar protein sortin 90.4 1.7 5.9E-05 46.4 12.1 16 1-16 175-191 (444)
208 3b9p_A CG5977-PA, isoform A; A 90.3 2.8 9.4E-05 41.8 13.0 45 96-142 182-226 (297)
209 3pfi_A Holliday junction ATP-d 89.6 1.1 3.9E-05 45.7 9.6 49 95-145 176-224 (338)
210 4b4t_H 26S protease regulatory 89.3 2.1 7.3E-05 45.4 11.4 43 94-140 371-414 (467)
211 3u61_B DNA polymerase accessor 89.3 3.3 0.00011 41.8 12.8 16 1-16 56-72 (324)
212 3cf0_A Transitional endoplasmi 88.8 0.59 2E-05 47.1 6.6 17 1-17 57-74 (301)
213 4b4t_K 26S protease regulatory 88.2 1.3 4.4E-05 46.8 8.8 18 1-18 214-232 (428)
214 3vfd_A Spastin; ATPase, microt 87.6 4.5 0.00015 42.2 12.7 45 96-142 275-319 (389)
215 3vr4_D V-type sodium ATPase su 85.9 1.1 3.9E-05 47.3 6.7 79 2-84 160-259 (465)
216 3l0o_A Transcription terminati 85.8 1.2 4.2E-05 46.0 6.7 31 2-32 184-216 (427)
217 1sky_E F1-ATPase, F1-ATP synth 85.8 0.94 3.2E-05 48.3 6.1 78 2-83 160-255 (473)
218 4b4t_L 26S protease subunit RP 85.7 2.1 7.1E-05 45.4 8.7 42 95-140 344-386 (437)
219 2cvh_A DNA repair and recombin 85.3 0.95 3.2E-05 42.8 5.5 24 1-27 28-52 (220)
220 1sxj_C Activator 1 40 kDa subu 85.3 2.5 8.7E-05 43.2 9.1 45 96-143 162-207 (340)
221 3ice_A Transcription terminati 84.7 1.6 5.3E-05 45.3 6.8 85 1-92 182-280 (422)
222 3cf2_A TER ATPase, transitiona 84.0 1.3 4.5E-05 50.7 6.7 43 95-141 364-407 (806)
223 4b4t_M 26S protease regulatory 83.9 0.89 3.1E-05 48.2 4.9 42 95-140 344-386 (434)
224 2ck3_D ATP synthase subunit be 83.3 3.3 0.00011 44.0 8.9 79 2-84 162-264 (482)
225 2qe7_A ATP synthase subunit al 83.2 2.4 8.1E-05 45.4 7.8 78 2-84 171-265 (502)
226 4b4t_I 26S protease regulatory 82.5 1.4 4.7E-05 46.4 5.6 42 95-140 345-387 (437)
227 2r8r_A Sensor protein; KDPD, P 81.8 0.94 3.2E-05 43.2 3.6 22 1-22 14-37 (228)
228 3hu3_A Transitional endoplasmi 81.6 2.4 8.1E-05 45.9 7.3 16 1-16 246-262 (489)
229 2ck3_A ATP synthase subunit al 81.5 2.3 8E-05 45.5 6.9 80 2-84 171-273 (510)
230 2z43_A DNA repair and recombin 80.9 0.68 2.3E-05 47.3 2.5 27 1-27 115-148 (324)
231 1ixz_A ATP-dependent metallopr 80.3 1.5 5.2E-05 42.6 4.8 17 1-17 57-74 (254)
232 1iy2_A ATP-dependent metallopr 79.9 1.8 6.1E-05 42.9 5.2 17 1-17 81-98 (278)
233 1fx0_B ATP synthase beta chain 79.9 4.7 0.00016 43.1 8.6 79 2-84 174-277 (498)
234 2b8t_A Thymidine kinase; deoxy 79.2 0.94 3.2E-05 43.3 2.7 25 2-26 21-46 (223)
235 1qhx_A CPT, protein (chloramph 79.0 0.75 2.6E-05 42.0 1.9 17 1-17 11-28 (178)
236 3cwq_A Para family chromosome 78.5 1.3 4.6E-05 41.8 3.6 25 2-27 10-35 (209)
237 2r9v_A ATP synthase subunit al 78.3 3.2 0.00011 44.5 6.7 78 2-84 184-278 (515)
238 4dzz_A Plasmid partitioning pr 78.2 1.3 4.6E-05 41.3 3.5 26 2-27 11-37 (206)
239 3gqb_B V-type ATP synthase bet 78.2 3.3 0.00011 43.8 6.7 80 2-84 156-262 (464)
240 2gno_A DNA polymerase III, gam 78.0 4.1 0.00014 41.0 7.2 20 97-116 133-152 (305)
241 1fx0_A ATP synthase alpha chai 78.0 2 6.8E-05 46.1 5.0 75 2-83 172-265 (507)
242 1v5w_A DMC1, meiotic recombina 77.9 4.2 0.00014 41.7 7.4 27 1-27 130-163 (343)
243 3oaa_A ATP synthase subunit al 77.6 4.4 0.00015 43.3 7.5 74 2-83 171-264 (513)
244 3hr8_A Protein RECA; alpha and 76.7 2.4 8.1E-05 43.7 5.0 27 1-27 69-96 (356)
245 3io5_A Recombination and repai 75.3 2.5 8.5E-05 42.5 4.6 27 1-27 36-65 (333)
246 3kb2_A SPBC2 prophage-derived 74.9 1.2 4E-05 40.2 2.0 17 1-17 9-26 (173)
247 1kht_A Adenylate kinase; phosp 74.7 3.8 0.00013 37.5 5.6 17 1-17 11-28 (192)
248 1cp2_A CP2, nitrogenase iron p 74.1 2 7E-05 42.1 3.7 18 2-19 10-28 (269)
249 2i1q_A DNA repair and recombin 73.8 1.2 4.2E-05 45.2 2.0 15 1-15 106-121 (322)
250 3t15_A Ribulose bisphosphate c 73.6 1.5 5.3E-05 43.8 2.7 18 1-18 44-62 (293)
251 1g3q_A MIND ATPase, cell divis 73.2 2.1 7.3E-05 40.9 3.5 26 2-27 12-38 (237)
252 1qvr_A CLPB protein; coiled co 73.1 5.8 0.0002 46.2 7.8 17 1-17 199-216 (854)
253 4fcw_A Chaperone protein CLPB; 73.0 7.3 0.00025 38.9 7.7 18 1-18 55-73 (311)
254 3lw7_A Adenylate kinase relate 73.0 1.3 4.4E-05 40.0 1.8 12 1-12 9-21 (179)
255 3kjh_A CO dehydrogenase/acetyl 72.8 1.9 6.7E-05 41.6 3.1 25 2-26 9-34 (254)
256 3trf_A Shikimate kinase, SK; a 72.6 1.4 4.9E-05 40.3 2.0 16 1-16 13-29 (185)
257 3ea0_A ATPase, para family; al 72.5 2.4 8.3E-05 40.8 3.8 18 2-19 14-32 (245)
258 1nks_A Adenylate kinase; therm 72.1 2.5 8.7E-05 38.7 3.7 18 1-18 9-27 (194)
259 2c61_A A-type ATP synthase non 72.1 5.7 0.0002 42.2 6.7 78 2-83 161-259 (469)
260 3vaa_A Shikimate kinase, SK; s 71.6 1.6 5.6E-05 40.7 2.2 16 1-16 33-49 (199)
261 2ph1_A Nucleotide-binding prot 71.3 2.4 8.3E-05 41.5 3.5 18 2-19 28-46 (262)
262 1ly1_A Polynucleotide kinase; 71.3 1.7 5.6E-05 39.6 2.1 14 1-14 10-24 (181)
263 3k9g_A PF-32 protein; ssgcid, 71.0 2.7 9.2E-05 41.2 3.7 16 2-17 37-53 (267)
264 3bh0_A DNAB-like replicative h 70.8 5.5 0.00019 40.2 6.1 43 1-50 76-119 (315)
265 1yrb_A ATP(GTP)binding protein 70.4 2.8 9.6E-05 40.8 3.7 17 1-17 22-39 (262)
266 2afh_E Nitrogenase iron protei 70.0 2.7 9.2E-05 41.8 3.5 18 2-19 11-29 (289)
267 2yvu_A Probable adenylyl-sulfa 69.9 3.1 0.00011 38.1 3.7 18 1-18 21-39 (186)
268 3q9l_A Septum site-determining 69.6 2.8 9.7E-05 40.7 3.5 18 2-19 12-30 (260)
269 3end_A Light-independent proto 69.6 2.8 9.5E-05 42.1 3.5 18 2-19 50-68 (307)
270 3zq6_A Putative arsenical pump 69.1 2.9 9.8E-05 42.5 3.5 18 2-19 23-41 (324)
271 2r62_A Cell division protease 68.8 2.2 7.6E-05 41.8 2.6 19 1-19 52-71 (268)
272 1hyq_A MIND, cell division inh 68.7 3 0.0001 40.7 3.5 26 2-27 12-38 (263)
273 2oze_A ORF delta'; para, walke 68.7 3 0.0001 41.6 3.5 17 2-18 46-63 (298)
274 2jaq_A Deoxyguanosine kinase; 68.6 1.9 6.4E-05 40.2 1.8 17 1-17 8-25 (205)
275 2rhm_A Putative kinase; P-loop 68.2 2.2 7.5E-05 39.3 2.3 16 1-16 13-29 (193)
276 3iij_A Coilin-interacting nucl 68.1 1.9 6.5E-05 39.3 1.8 16 1-16 19-35 (180)
277 1via_A Shikimate kinase; struc 68.0 2 7E-05 38.9 1.9 16 1-16 12-28 (175)
278 1wcv_1 SOJ, segregation protei 67.8 2.7 9.3E-05 41.0 2.9 18 2-19 16-34 (257)
279 1byi_A Dethiobiotin synthase; 67.7 3.2 0.00011 39.3 3.3 18 2-19 11-29 (224)
280 1xjc_A MOBB protein homolog; s 67.4 3.9 0.00014 37.0 3.7 19 1-19 12-31 (169)
281 3gmt_A Adenylate kinase; ssgci 67.4 41 0.0014 31.9 11.0 16 1-16 16-32 (230)
282 2xj4_A MIPZ; replication, cell 67.4 3.3 0.00011 41.2 3.5 18 2-19 14-32 (286)
283 3iqw_A Tail-anchored protein t 67.0 3.6 0.00012 41.9 3.8 26 2-27 25-51 (334)
284 1ex7_A Guanylate kinase; subst 66.2 1.9 6.6E-05 39.8 1.4 17 1-17 9-26 (186)
285 2plr_A DTMP kinase, probable t 66.0 4.1 0.00014 38.0 3.7 20 1-20 12-32 (213)
286 2dr3_A UPF0273 protein PH0284; 65.9 3.9 0.00014 39.2 3.7 27 1-27 31-58 (247)
287 3t61_A Gluconokinase; PSI-biol 65.7 2.6 9E-05 39.2 2.3 16 1-16 26-42 (202)
288 2ze6_A Isopentenyl transferase 65.2 2.7 9.3E-05 41.0 2.3 16 1-16 9-25 (253)
289 1kag_A SKI, shikimate kinase I 65.1 2.7 9.1E-05 37.9 2.1 16 1-16 12-28 (173)
290 1zp6_A Hypothetical protein AT 65.0 2.5 8.6E-05 38.8 1.9 15 1-15 17-32 (191)
291 1tue_A Replication protein E1; 64.9 2.4 8E-05 39.8 1.7 38 133-170 171-208 (212)
292 3n70_A Transport activator; si 64.8 2.7 9.3E-05 36.8 2.0 15 2-16 33-48 (145)
293 1lv7_A FTSH; alpha/beta domain 64.5 2.7 9.3E-05 40.9 2.2 17 1-17 53-70 (257)
294 3ug7_A Arsenical pump-driving 64.4 4 0.00014 41.9 3.5 18 2-19 35-53 (349)
295 3fkq_A NTRC-like two-domain pr 63.8 3.7 0.00013 42.6 3.2 26 2-27 153-179 (373)
296 1nn5_A Similar to deoxythymidy 63.5 4.4 0.00015 37.9 3.4 19 1-19 17-36 (215)
297 1u94_A RECA protein, recombina 63.5 4.4 0.00015 41.7 3.6 27 1-27 71-98 (356)
298 1zuh_A Shikimate kinase; alpha 63.4 3.1 0.0001 37.4 2.1 16 1-16 15-31 (168)
299 2kjq_A DNAA-related protein; s 63.3 3.5 0.00012 36.4 2.5 27 1-27 44-71 (149)
300 2px0_A Flagellar biosynthesis 63.2 11 0.00037 37.7 6.3 17 1-17 113-130 (296)
301 3a4m_A L-seryl-tRNA(SEC) kinas 62.9 3.1 0.00011 40.7 2.2 17 1-17 12-29 (260)
302 3cm0_A Adenylate kinase; ATP-b 62.7 3.3 0.00011 37.8 2.3 16 1-16 12-28 (186)
303 4hlc_A DTMP kinase, thymidylat 62.6 4.4 0.00015 38.1 3.1 21 2-22 11-32 (205)
304 2qor_A Guanylate kinase; phosp 62.5 3.3 0.00011 38.7 2.2 16 1-16 20-36 (204)
305 4eun_A Thermoresistant glucoki 62.1 4.7 0.00016 37.4 3.3 16 1-16 37-53 (200)
306 4a1f_A DNAB helicase, replicat 62.1 9.5 0.00032 38.8 5.7 43 2-51 55-98 (338)
307 2woo_A ATPase GET3; tail-ancho 62.0 5.1 0.00017 40.8 3.7 18 2-19 28-46 (329)
308 1in4_A RUVB, holliday junction 61.9 3.1 0.00011 42.4 2.1 47 96-144 173-219 (334)
309 2vli_A Antibiotic resistance p 61.8 2.2 7.4E-05 38.9 0.8 16 1-16 13-29 (183)
310 1e6c_A Shikimate kinase; phosp 61.8 3.6 0.00012 37.0 2.3 16 1-16 10-26 (173)
311 3io3_A DEHA2D07832P; chaperone 61.8 5.2 0.00018 41.0 3.8 17 1-17 26-43 (348)
312 3pg5_A Uncharacterized protein 61.6 4 0.00014 42.1 2.9 26 2-27 11-37 (361)
313 1tev_A UMP-CMP kinase; ploop, 61.5 3.5 0.00012 37.8 2.2 16 1-16 11-27 (196)
314 3fwy_A Light-independent proto 61.5 5 0.00017 40.5 3.5 17 2-18 57-74 (314)
315 2iyv_A Shikimate kinase, SK; t 61.5 3.4 0.00012 37.7 2.1 16 1-16 10-26 (184)
316 2pt5_A Shikimate kinase, SK; a 61.3 3.5 0.00012 36.9 2.2 16 1-16 8-24 (168)
317 2zts_A Putative uncharacterize 61.2 6.8 0.00023 37.5 4.4 27 1-27 38-66 (251)
318 1r6b_X CLPA protein; AAA+, N-t 60.8 13 0.00044 42.6 7.3 16 1-16 215-231 (758)
319 2cdn_A Adenylate kinase; phosp 60.5 3.8 0.00013 38.1 2.3 16 1-16 28-44 (201)
320 2c95_A Adenylate kinase 1; tra 60.5 3.8 0.00013 37.7 2.3 16 1-16 17-33 (196)
321 1y63_A LMAJ004144AAA protein; 60.3 3.7 0.00013 37.6 2.2 15 1-15 18-33 (184)
322 1knq_A Gluconate kinase; ALFA/ 60.2 3.6 0.00012 37.1 2.1 16 1-16 16-32 (175)
323 1aky_A Adenylate kinase; ATP:A 60.2 3.8 0.00013 38.7 2.3 16 1-16 12-28 (220)
324 2bwj_A Adenylate kinase 5; pho 59.7 3.9 0.00013 37.7 2.2 16 1-16 20-36 (199)
325 2w0m_A SSO2452; RECA, SSPF, un 59.6 5.3 0.00018 37.7 3.3 27 1-27 31-58 (235)
326 2woj_A ATPase GET3; tail-ancho 59.4 6 0.00021 40.7 3.8 26 2-27 27-55 (354)
327 1kgd_A CASK, peripheral plasma 59.4 3.9 0.00013 37.3 2.1 16 1-16 13-29 (180)
328 3uie_A Adenylyl-sulfate kinase 59.3 4 0.00014 37.9 2.3 17 1-17 33-50 (200)
329 2x8a_A Nuclear valosin-contain 59.3 3.5 0.00012 40.8 1.8 17 1-17 52-69 (274)
330 2bdt_A BH3686; alpha-beta prot 59.3 3.8 0.00013 37.6 2.0 14 1-14 10-24 (189)
331 1zak_A Adenylate kinase; ATP:A 59.1 3.5 0.00012 39.1 1.8 16 1-16 13-29 (222)
332 1ypw_A Transitional endoplasmi 58.9 3.6 0.00012 47.5 2.2 18 1-18 246-264 (806)
333 3hjn_A DTMP kinase, thymidylat 58.9 6.1 0.00021 36.7 3.4 26 2-27 9-35 (197)
334 2zr9_A Protein RECA, recombina 58.8 6 0.00021 40.6 3.6 27 1-27 69-96 (349)
335 3syl_A Protein CBBX; photosynt 58.8 4 0.00014 40.8 2.3 18 1-18 75-93 (309)
336 2wwf_A Thymidilate kinase, put 58.7 4.3 0.00015 37.9 2.4 22 1-22 18-41 (212)
337 1zd8_A GTP:AMP phosphotransfer 58.7 4.1 0.00014 38.7 2.2 16 1-16 15-31 (227)
338 2pbr_A DTMP kinase, thymidylat 58.3 4.3 0.00015 37.2 2.3 17 1-17 8-25 (195)
339 1gvn_B Zeta; postsegregational 58.2 3.6 0.00012 41.0 1.7 16 1-16 41-57 (287)
340 3ez2_A Plasmid partition prote 58.1 3.4 0.00011 43.3 1.6 16 2-17 118-134 (398)
341 2orw_A Thymidine kinase; TMTK, 57.7 7.1 0.00024 35.8 3.6 16 2-17 12-28 (184)
342 3bgw_A DNAB-like replicative h 57.2 8.3 0.00028 41.0 4.5 27 1-27 205-232 (444)
343 3kl4_A SRP54, signal recogniti 57.1 23 0.00078 37.3 7.8 19 1-19 105-124 (433)
344 1ofh_A ATP-dependent HSL prote 57.1 4.3 0.00015 40.5 2.1 16 1-16 58-74 (310)
345 3fb4_A Adenylate kinase; psych 56.6 4.6 0.00016 37.9 2.2 16 1-16 8-24 (216)
346 1qf9_A UMP/CMP kinase, protein 56.5 4.7 0.00016 36.8 2.2 16 1-16 14-30 (194)
347 3tau_A Guanylate kinase, GMP k 56.4 4.8 0.00017 37.7 2.3 17 1-17 16-33 (208)
348 3be4_A Adenylate kinase; malar 56.3 4.9 0.00017 37.9 2.3 16 1-16 13-29 (217)
349 1ukz_A Uridylate kinase; trans 56.3 4.8 0.00016 37.4 2.2 15 1-15 23-38 (203)
350 1ye8_A Protein THEP1, hypothet 56.2 4.8 0.00016 36.8 2.1 16 1-16 8-24 (178)
351 2z0h_A DTMP kinase, thymidylat 56.1 4.8 0.00016 37.0 2.2 18 1-18 8-26 (197)
352 3dl0_A Adenylate kinase; phosp 55.8 4.9 0.00017 37.8 2.2 15 1-15 8-23 (216)
353 1xp8_A RECA protein, recombina 55.7 7.3 0.00025 40.2 3.6 27 1-27 82-109 (366)
354 1e4v_A Adenylate kinase; trans 55.5 5.1 0.00017 37.7 2.3 16 1-16 8-24 (214)
355 1n0w_A DNA repair protein RAD5 55.2 8.4 0.00029 36.7 3.8 27 1-27 32-65 (243)
356 2xb4_A Adenylate kinase; ATP-b 55.1 5.3 0.00018 37.9 2.3 16 1-16 8-24 (223)
357 1ak2_A Adenylate kinase isoenz 54.6 4.8 0.00016 38.5 1.9 16 1-16 24-40 (233)
358 2bbw_A Adenylate kinase 4, AK4 54.4 5.4 0.00019 38.4 2.3 16 1-16 35-51 (246)
359 2if2_A Dephospho-COA kinase; a 54.4 5.2 0.00018 37.2 2.1 14 1-14 9-23 (204)
360 2hf9_A Probable hydrogenase ni 53.9 8.5 0.00029 36.2 3.6 15 2-16 47-62 (226)
361 2j41_A Guanylate kinase; GMP, 53.9 5.3 0.00018 37.1 2.1 16 1-16 14-30 (207)
362 1cr0_A DNA primase/helicase; R 53.6 8.3 0.00028 38.3 3.6 27 1-27 43-71 (296)
363 3tr0_A Guanylate kinase, GMP k 53.5 5.5 0.00019 36.9 2.1 15 1-15 15-30 (205)
364 1m7g_A Adenylylsulfate kinase; 53.5 5.7 0.0002 37.2 2.3 17 1-17 33-50 (211)
365 1um8_A ATP-dependent CLP prote 53.5 5.2 0.00018 41.5 2.1 17 1-17 80-97 (376)
366 3hws_A ATP-dependent CLP prote 53.2 5.3 0.00018 41.2 2.1 16 1-16 59-75 (363)
367 2v54_A DTMP kinase, thymidylat 53.1 5.4 0.00019 36.9 2.0 16 1-16 12-28 (204)
368 2q6t_A DNAB replication FORK h 52.9 16 0.00055 38.7 5.9 43 1-50 208-252 (444)
369 3a00_A Guanylate kinase, GMP k 52.7 5.8 0.0002 36.3 2.1 20 1-20 9-29 (186)
370 1q57_A DNA primase/helicase; d 52.6 14 0.00047 40.0 5.4 44 1-51 250-295 (503)
371 2wsm_A Hydrogenase expression/ 52.2 10 0.00034 35.5 3.8 19 1-19 38-57 (221)
372 2xxa_A Signal recognition part 52.2 8.8 0.0003 40.6 3.7 19 1-19 108-127 (433)
373 3pxi_A Negative regulator of g 52.1 12 0.00041 42.9 5.1 17 1-17 529-546 (758)
374 4a74_A DNA repair and recombin 52.1 10 0.00034 35.8 3.8 27 1-27 33-66 (231)
375 1np6_A Molybdopterin-guanine d 51.8 11 0.00036 34.3 3.7 17 2-18 15-32 (174)
376 3igf_A ALL4481 protein; two-do 51.5 5.9 0.0002 41.0 2.1 26 2-27 11-37 (374)
377 3vr4_A V-type sodium ATPase ca 51.4 9 0.00031 41.6 3.5 28 2-32 241-269 (600)
378 3mfy_A V-type ATP synthase alp 51.2 16 0.00053 39.6 5.3 39 2-46 236-275 (588)
379 1vma_A Cell division protein F 51.1 10 0.00034 38.1 3.7 19 1-19 112-131 (306)
380 3co5_A Putative two-component 50.9 3 0.0001 36.4 -0.2 15 2-16 36-51 (143)
381 2ga8_A Hypothetical 39.9 kDa p 50.7 4.9 0.00017 41.1 1.3 20 1-20 32-52 (359)
382 3bfv_A CAPA1, CAPB2, membrane 50.7 9.8 0.00034 37.3 3.5 26 2-27 92-118 (271)
383 3dm5_A SRP54, signal recogniti 50.7 10 0.00036 40.0 3.9 19 1-19 108-127 (443)
384 1ls1_A Signal recognition part 50.5 10 0.00035 37.8 3.6 19 1-19 106-125 (295)
385 3tlx_A Adenylate kinase 2; str 50.2 6.9 0.00024 37.7 2.3 16 1-16 37-53 (243)
386 1ihu_A Arsenical pump-driving 50.2 9 0.00031 42.4 3.5 26 2-27 17-43 (589)
387 2r6a_A DNAB helicase, replicat 50.2 16 0.00054 38.9 5.4 26 2-27 212-239 (454)
388 2p5t_B PEZT; postsegregational 50.2 4.8 0.00016 39.1 1.1 16 1-16 40-56 (253)
389 1zu4_A FTSY; GTPase, signal re 50.1 10 0.00034 38.4 3.5 19 1-19 113-132 (320)
390 3ney_A 55 kDa erythrocyte memb 50.0 6.6 0.00022 36.5 2.0 17 1-17 27-44 (197)
391 2ehv_A Hypothetical protein PH 49.8 9.8 0.00033 36.4 3.3 27 1-27 38-66 (251)
392 2ce2_X GTPase HRAS; signaling 49.8 6.6 0.00023 34.4 1.9 13 2-14 12-25 (166)
393 2pez_A Bifunctional 3'-phospho 49.7 6.9 0.00024 35.4 2.1 17 1-17 13-30 (179)
394 1cke_A CK, MSSA, protein (cyti 49.7 6.7 0.00023 37.0 2.1 15 1-15 13-28 (227)
395 3c8u_A Fructokinase; YP_612366 49.6 5.8 0.0002 37.1 1.6 17 1-17 30-47 (208)
396 1rz3_A Hypothetical protein rb 49.6 12 0.00039 34.8 3.7 17 1-17 30-47 (201)
397 3nwj_A ATSK2; P loop, shikimat 49.4 6.4 0.00022 38.2 1.9 16 1-16 56-72 (250)
398 3sr0_A Adenylate kinase; phosp 49.2 7.4 0.00025 36.5 2.3 29 61-90 63-91 (206)
399 2qt1_A Nicotinamide riboside k 49.2 6.2 0.00021 36.7 1.7 15 1-15 29-44 (207)
400 1gtv_A TMK, thymidylate kinase 48.9 5.6 0.00019 37.1 1.4 16 2-17 9-25 (214)
401 4gp7_A Metallophosphoesterase; 48.9 5.9 0.0002 35.8 1.4 13 1-13 17-30 (171)
402 1nlf_A Regulatory protein REPA 48.8 12 0.00041 36.7 3.9 17 1-17 38-55 (279)
403 2r44_A Uncharacterized protein 48.7 5.8 0.0002 40.2 1.5 18 1-18 54-72 (331)
404 3ez9_A Para; DNA binding, wing 48.3 3.7 0.00013 43.2 -0.1 16 2-17 121-137 (403)
405 3la6_A Tyrosine-protein kinase 48.2 12 0.00041 37.1 3.7 26 2-27 102-128 (286)
406 1j8m_F SRP54, signal recogniti 48.1 8.4 0.00029 38.4 2.6 27 1-27 106-133 (297)
407 3cio_A ETK, tyrosine-protein k 48.0 11 0.00039 37.5 3.5 26 2-27 114-140 (299)
408 1rj9_A FTSY, signal recognitio 47.6 12 0.00041 37.5 3.6 26 1-27 110-136 (304)
409 3cmw_A Protein RECA, recombina 47.5 15 0.00051 45.7 5.0 27 1-27 740-767 (1706)
410 1jjv_A Dephospho-COA kinase; P 47.4 6.9 0.00024 36.4 1.7 14 1-14 10-24 (206)
411 1ltq_A Polynucleotide kinase; 47.2 7.5 0.00026 38.6 2.1 15 1-15 10-25 (301)
412 3crm_A TRNA delta(2)-isopenten 47.1 8 0.00027 39.0 2.2 16 1-16 13-29 (323)
413 4eaq_A DTMP kinase, thymidylat 47.0 8.6 0.00029 36.7 2.4 18 1-18 34-52 (229)
414 2dyk_A GTP-binding protein; GT 47.0 8.2 0.00028 33.7 2.1 13 2-14 10-23 (161)
415 2bjv_A PSP operon transcriptio 46.9 7.8 0.00027 37.7 2.1 17 1-17 37-54 (265)
416 1uf9_A TT1252 protein; P-loop, 46.7 8.1 0.00028 35.6 2.1 15 1-15 16-31 (203)
417 1g41_A Heat shock protein HSLU 46.6 7.8 0.00027 41.0 2.1 18 1-18 58-76 (444)
418 1lvg_A Guanylate kinase, GMP k 46.6 8.2 0.00028 35.8 2.1 16 1-16 12-28 (198)
419 3asz_A Uridine kinase; cytidin 46.4 8.1 0.00028 36.0 2.0 17 1-17 14-31 (211)
420 3con_A GTPase NRAS; structural 46.4 7.9 0.00027 35.1 1.9 13 2-14 30-43 (190)
421 2ce7_A Cell division protein F 46.2 7.9 0.00027 41.5 2.1 17 1-17 57-74 (476)
422 3umf_A Adenylate kinase; rossm 46.2 8.9 0.00031 36.2 2.3 15 1-15 37-52 (217)
423 3d3q_A TRNA delta(2)-isopenten 45.8 8.6 0.00029 39.1 2.2 16 1-16 15-31 (340)
424 1uj2_A Uridine-cytidine kinase 44.9 9.1 0.00031 37.0 2.2 16 1-16 30-46 (252)
425 2c9o_A RUVB-like 1; hexameric 44.8 8.3 0.00028 41.2 2.1 18 1-18 71-89 (456)
426 2i3b_A HCR-ntpase, human cance 44.8 10 0.00035 34.9 2.4 16 1-16 9-25 (189)
427 3upu_A ATP-dependent DNA helic 44.8 21 0.00072 38.0 5.3 26 1-26 53-79 (459)
428 3b9q_A Chloroplast SRP recepto 44.6 14 0.00046 37.0 3.5 26 1-27 108-134 (302)
429 1oix_A RAS-related protein RAB 44.0 9.5 0.00033 34.9 2.1 14 2-15 38-52 (191)
430 2v3c_C SRP54, signal recogniti 43.9 6.9 0.00024 41.4 1.2 18 1-18 107-125 (432)
431 4edh_A DTMP kinase, thymidylat 43.9 17 0.00057 34.2 3.8 19 1-19 14-33 (213)
432 3pxg_A Negative regulator of g 43.5 8.2 0.00028 41.4 1.8 20 97-116 319-338 (468)
433 1z2a_A RAS-related protein RAB 43.3 9.9 0.00034 33.4 2.0 13 2-14 14-27 (168)
434 2ffh_A Protein (FFH); SRP54, s 43.2 16 0.00055 38.4 3.9 19 1-19 106-125 (425)
435 3ake_A Cytidylate kinase; CMP 43.1 10 0.00036 35.0 2.3 16 1-16 10-26 (208)
436 3r20_A Cytidylate kinase; stru 43.1 11 0.00036 36.1 2.3 16 1-16 17-33 (233)
437 1htw_A HI0065; nucleotide-bind 43.1 9.4 0.00032 34.0 1.8 15 2-16 42-57 (158)
438 2eyu_A Twitching motility prot 42.9 13 0.00045 36.2 3.0 27 1-27 33-60 (261)
439 2f9l_A RAB11B, member RAS onco 42.7 10 0.00034 34.9 2.0 13 2-14 14-27 (199)
440 1odf_A YGR205W, hypothetical 3 42.5 10 0.00034 37.7 2.1 17 1-17 39-56 (290)
441 2ocp_A DGK, deoxyguanosine kin 42.4 11 0.00036 36.2 2.2 17 1-17 10-27 (241)
442 3m6a_A ATP-dependent protease 42.4 9 0.00031 42.0 1.9 18 1-18 116-134 (543)
443 3p32_A Probable GTPase RV1496/ 42.3 17 0.00058 37.2 3.9 17 1-17 87-104 (355)
444 4e22_A Cytidylate kinase; P-lo 42.3 11 0.00037 36.5 2.3 16 1-16 35-51 (252)
445 2wji_A Ferrous iron transport 42.2 9.4 0.00032 33.8 1.7 13 2-14 12-25 (165)
446 2grj_A Dephospho-COA kinase; T 42.2 11 0.00037 34.8 2.2 15 1-15 20-35 (192)
447 2zej_A Dardarin, leucine-rich 42.2 9.1 0.00031 34.7 1.6 13 2-14 11-24 (184)
448 3cmu_A Protein RECA, recombina 42.2 24 0.00082 44.6 5.7 73 1-83 1435-1515(2050)
449 1vht_A Dephospho-COA kinase; s 42.0 11 0.00036 35.4 2.1 14 1-14 12-26 (218)
450 3a8t_A Adenylate isopentenyltr 41.9 7.5 0.00026 39.5 1.1 16 1-16 48-64 (339)
451 1znw_A Guanylate kinase, GMP k 41.9 10 0.00034 35.4 1.9 16 1-16 28-44 (207)
452 2dhr_A FTSH; AAA+ protein, hex 41.8 9.9 0.00034 41.0 2.1 17 1-17 72-89 (499)
453 3foz_A TRNA delta(2)-isopenten 41.7 11 0.00037 37.7 2.2 15 1-15 18-33 (316)
454 2wjg_A FEOB, ferrous iron tran 41.6 9.7 0.00033 34.4 1.7 13 2-14 16-29 (188)
455 2qmh_A HPR kinase/phosphorylas 41.6 8.2 0.00028 35.9 1.2 15 1-15 42-57 (205)
456 1s96_A Guanylate kinase, GMP k 41.6 11 0.00037 35.7 2.1 17 1-17 24-41 (219)
457 1z6g_A Guanylate kinase; struc 41.5 11 0.00037 35.6 2.0 16 1-16 31-47 (218)
458 3exa_A TRNA delta(2)-isopenten 41.5 11 0.00037 37.9 2.1 15 1-15 11-26 (322)
459 2axn_A 6-phosphofructo-2-kinas 41.4 25 0.00086 38.1 5.2 21 1-21 43-64 (520)
460 1nrj_B SR-beta, signal recogni 41.0 11 0.00037 35.1 2.0 15 1-15 20-35 (218)
461 2ged_A SR-beta, signal recogni 40.7 11 0.00039 34.1 2.1 14 2-15 57-71 (193)
462 1u8z_A RAS-related protein RAL 40.5 11 0.00038 32.9 1.9 13 2-14 13-26 (168)
463 2jeo_A Uridine-cytidine kinase 40.4 11 0.00038 36.1 2.0 16 1-16 33-49 (245)
464 3aez_A Pantothenate kinase; tr 40.0 12 0.00039 37.7 2.1 16 2-17 99-115 (312)
465 2fz4_A DNA repair protein RAD2 40.0 40 0.0014 32.0 5.9 15 2-16 117-132 (237)
466 3e70_C DPA, signal recognition 39.7 19 0.00065 36.4 3.7 18 1-18 137-155 (328)
467 2og2_A Putative signal recogni 39.6 18 0.00061 37.1 3.5 26 1-27 165-191 (359)
468 1p6x_A Thymidine kinase; P-loo 39.6 11 0.00038 38.2 1.9 18 2-19 16-34 (334)
469 1r8s_A ADP-ribosylation factor 39.4 13 0.00043 32.6 2.1 13 2-14 9-22 (164)
470 1m7b_A RND3/RHOE small GTP-bin 39.3 12 0.00042 33.7 2.0 14 1-14 15-29 (184)
471 3lv8_A DTMP kinase, thymidylat 39.1 13 0.00045 35.6 2.2 26 1-26 35-62 (236)
472 1c1y_A RAS-related protein RAP 38.9 13 0.00044 32.6 2.0 13 2-14 12-25 (167)
473 1bif_A 6-phosphofructo-2-kinas 38.8 19 0.00064 38.5 3.7 23 1-23 47-70 (469)
474 4tmk_A Protein (thymidylate ki 38.7 14 0.00047 34.8 2.3 18 1-18 11-29 (213)
475 1z08_A RAS-related protein RAB 38.7 13 0.00045 32.7 2.1 13 2-14 15-28 (170)
476 3v9p_A DTMP kinase, thymidylat 38.7 9.5 0.00032 36.4 1.2 19 1-19 33-52 (227)
477 2erx_A GTP-binding protein DI- 38.5 11 0.00039 33.1 1.6 13 2-14 12-25 (172)
478 2f6r_A COA synthase, bifunctio 38.5 11 0.00039 37.1 1.8 13 1-13 83-96 (281)
479 1ek0_A Protein (GTP-binding pr 38.3 13 0.00045 32.6 2.0 13 2-14 12-25 (170)
480 1kao_A RAP2A; GTP-binding prot 38.1 14 0.00046 32.3 2.1 13 2-14 12-25 (167)
481 2gk6_A Regulator of nonsense t 38.1 31 0.0011 38.3 5.5 30 1-30 203-233 (624)
482 2nzj_A GTP-binding protein REM 38.1 13 0.00044 32.9 1.9 13 2-14 13-26 (175)
483 3q85_A GTP-binding protein REM 38.1 12 0.00041 33.0 1.7 13 1-13 10-23 (169)
484 3q72_A GTP-binding protein RAD 37.8 12 0.0004 32.9 1.6 12 2-13 11-23 (166)
485 2fn4_A P23, RAS-related protei 37.4 13 0.00046 33.0 1.9 14 2-15 18-32 (181)
486 1z0j_A RAB-22, RAS-related pro 37.3 14 0.00048 32.4 2.1 13 2-14 15-28 (170)
487 3zvl_A Bifunctional polynucleo 37.3 11 0.00039 39.5 1.6 16 1-16 266-282 (416)
488 1m2o_B GTP-binding protein SAR 37.3 13 0.00046 33.8 1.9 13 2-14 32-45 (190)
489 3kta_A Chromosome segregation 37.1 14 0.00046 33.4 1.9 13 2-14 35-48 (182)
490 1ky3_A GTP-binding protein YPT 37.0 14 0.00049 32.8 2.1 13 2-14 17-30 (182)
491 3ld9_A DTMP kinase, thymidylat 36.9 14 0.00049 34.9 2.1 18 1-18 29-47 (223)
492 1r2q_A RAS-related protein RAB 36.8 14 0.00047 32.4 1.9 13 2-14 15-28 (170)
493 3ihw_A Centg3; RAS, centaurin, 36.8 15 0.0005 33.3 2.1 13 2-14 29-42 (184)
494 1z0f_A RAB14, member RAS oncog 36.8 14 0.00049 32.7 2.0 13 2-14 24-37 (179)
495 1pzn_A RAD51, DNA repair and r 36.7 20 0.00069 36.6 3.4 27 1-27 139-172 (349)
496 3nbx_X ATPase RAVA; AAA+ ATPas 36.7 10 0.00035 41.0 1.1 16 1-16 49-65 (500)
497 2j37_W Signal recognition part 36.6 21 0.00071 38.5 3.5 18 2-19 110-128 (504)
498 1g8p_A Magnesium-chelatase 38 36.5 8.4 0.00029 39.1 0.4 17 1-17 53-70 (350)
499 3c5c_A RAS-like protein 12; GD 36.4 15 0.0005 33.3 2.1 13 2-14 30-43 (187)
500 3tmk_A Thymidylate kinase; pho 36.4 16 0.00054 34.5 2.3 18 1-18 13-31 (216)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=2.2e-28 Score=275.18 Aligned_cols=223 Identities=16% Similarity=0.169 Sum_probs=168.2
Q ss_pred CCCCcHHHHH-HHHH----HhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC--CCCCC------cchHHHH
Q 005085 1 MGGIGKTTIG-VVFN----QFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF--DIGTQ------KIPQYIR 67 (715)
Q Consensus 1 mgGiGKTTLa-~vy~----~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~------~~~~~l~ 67 (715)
|||||||||| ++|+ +++.+|+.++||+ +++.+. .+ +.+++++|+.+++.... ...+. .+...++
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 236 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KS-TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMIC 236 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-TH-HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CC-HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHH
Confidence 8999999999 9996 6899999999997 776542 34 78899999999876532 12111 3578999
Q ss_pred HHhcCC-eEEEEEeCcc-------------------CChHHHHHhC-cCcEEEcCCCCHHHHHHHHHhhhcCCCCCChhH
Q 005085 68 DRLQRM-KVFIVLDDVN-------------------KDKTILERYG-TQRIYEVEGLNCNEVLRLFSSCAFKENHCPEDL 126 (715)
Q Consensus 68 ~~L~~k-r~LlVLDDv~-------------------r~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~ 126 (715)
+.|++| |||||||||| |++.|+..++ ...+|+|++|+.+|||+||.++||+... ++++
T Consensus 237 ~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~ 315 (549)
T 2a5y_B 237 NALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKE 315 (549)
T ss_dssp HHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHH
T ss_pred HHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhH
Confidence 999996 9999999999 7777777775 4468999999999999999999987643 4678
Q ss_pred HHHHHHHHHHhCCCcchhHHhhhcccCCChhHHHHHHHH-hhccCCCCCcC-----------------------------
Q 005085 127 LKHSETAVHYAKGNPLALQVLGSSFYGKSKPDWVNALNN-LKRISGSDIYD----------------------------- 176 (715)
Q Consensus 127 ~~~~~~i~~~c~glPLai~~~g~~L~~k~~~~w~~~l~~-l~~~~~~~i~~----------------------------- 176 (715)
++++++|+++|+|+||||+++|+.|+.++ .+|...+.. +.......+..
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhh
Confidence 89999999999999999999999998774 233333322 21111111111
Q ss_pred ---------CHHHHHHHHhhC--CCCH-----------HHhHHHHhcccceEEe----CCeEeecHHHHHHHHHHHhhhc
Q 005085 177 ---------DREHVMWILSDD--YCSV-----------QYAMNVLVNKSLIKIS----YNKLQMHDLLQEMGREIVCQEF 230 (715)
Q Consensus 177 ---------~~~~l~~il~~~--~~~~-----------~~~l~~L~~~~ll~~~----~~~~~mhdli~~l~~~i~~~~~ 230 (715)
... +++|.++ |+.. ..++++|+++||++.. ...|+|||++|++|++++.+++
T Consensus 395 ~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 395 FAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp GGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred heeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 111 5677777 5432 2379999999999987 2479999999999998887765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.7e-28 Score=288.17 Aligned_cols=246 Identities=19% Similarity=0.178 Sum_probs=126.8
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCcc-ccccccccEEEecCCCcc-cccccCCCCC-CccEEeec
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSK-VHLQQESYRTQLSFKKVE-QIWEGQKKAP-KLKYVDLN 340 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~-l~~~~~L~~L~L~~~~l~-~lp~~~~~l~-~L~~L~L~ 340 (715)
++++++.+....+..|+++++|++|+++.|. +. ..+|.. +....+|++|++++|.+. .+|..+..++ +|++|+++
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~-~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSE-EE-EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCc-cc-CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 4444554444555666666666666666221 11 122322 333345555566555555 4555544444 55555555
Q ss_pred CCCCCcccCC-CCC--CCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCC
Q 005085 341 HSTNLTRIPE-PSE--TPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLK 416 (715)
Q Consensus 341 ~n~~~~~~p~-~~~--l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~ 416 (715)
+|.+.+.+|. +.. +++|++|++++|...+.+|..++++++|+.|++++|.....+|..++.+++|+ |++++|....
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 5544433333 332 45555555555544445555555555555555555544445555555555555 5555554444
Q ss_pred cCCCC---CCCCcEEeccCCCCc-ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccC
Q 005085 417 EFPRI---SGNVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEK 492 (715)
Q Consensus 417 ~l~~~---~~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 492 (715)
.+|.. ..+|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|.+++.+++|++|++++|.+.+.+|..++.
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 44432 234455555555555 44555555555555555555555555555555555555555555555555555555
Q ss_pred Ccccccccccccccccccc
Q 005085 493 MELLEEINLEEASNIKELP 511 (715)
Q Consensus 493 l~~L~~L~L~~n~~~~~lp 511 (715)
+++|+.|++++|+..+.+|
T Consensus 537 l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CTTCCEEECCSSEEESBCC
T ss_pred CCCCCEEECCCCccCCcCC
Confidence 5555555555554333333
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.2e-28 Score=287.38 Aligned_cols=305 Identities=17% Similarity=0.127 Sum_probs=249.7
Q ss_pred EecCCCCccc-ccChhhhcCCCCccEEEEeecCccccccCCccccccc-cccEEEecCCCcc-cccccCCC--CCCccEE
Q 005085 263 FLDLSKIEEI-NLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQ-ESYRTQLSFKKVE-QIWEGQKK--APKLKYV 337 (715)
Q Consensus 263 ~l~l~~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~-~L~~L~L~~~~l~-~lp~~~~~--l~~L~~L 337 (715)
.++++++... .+....+.++++|++|+++.|. +. ..+|..+.... +|++|++++|.+. .+|..+.. +++|++|
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FS-GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EE-ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cC-ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 4667777665 4566679999999999998432 21 24555554444 8999999999887 56666655 7889999
Q ss_pred eecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCC
Q 005085 338 DLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNL 415 (715)
Q Consensus 338 ~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l 415 (715)
++++|.+.+.+|. +..+++|++|++++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+ |++++|...
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 9999977767775 88899999999999877778888899999999999999887778888888899999 999988766
Q ss_pred CcCCCCC---CCCcEEeccCCCCc-ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchh--
Q 005085 416 KEFPRIS---GNVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEI-- 489 (715)
Q Consensus 416 ~~l~~~~---~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~-- 489 (715)
..+|..+ .+|++|++++|.+. .+|.+++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 6777543 56789999999988 78888889999999999999988889999999999999999998877666643
Q ss_pred --------------------------------------------------------------------ccCCcccccccc
Q 005085 490 --------------------------------------------------------------------LEKMELLEEINL 501 (715)
Q Consensus 490 --------------------------------------------------------------------~~~l~~L~~L~L 501 (715)
++.+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 334577889999
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
++|...+.+|..++++++|+.|+|++|.+.+. +++|+.|||++|.+++ .+|..+..++. +.|++++|.
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-CCCGGGGGCCCCSEEECCSSE
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECcCCc
Confidence 99977789999999999999999999999876 5679999999999885 48988888888 999999883
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.5e-28 Score=279.17 Aligned_cols=304 Identities=16% Similarity=0.171 Sum_probs=256.9
Q ss_pred eEEEecCCCCcccccChhhhcCCCCccEEEEeecCc------c-------------------------------------
Q 005085 260 KSIFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGH------F------------------------------------- 296 (715)
Q Consensus 260 ~~~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~------~------------------------------------- 296 (715)
+...++++++......|.+++++++|++|+++.|.. +
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 445677777776665678999999999999986521 0
Q ss_pred --------------------------------ccccCCccccccccccEEEecCCCccc------------------ccc
Q 005085 297 --------------------------------DVSKMSSKVHLQQESYRTQLSFKKVEQ------------------IWE 326 (715)
Q Consensus 297 --------------------------------~~~~l~~~l~~~~~L~~L~L~~~~l~~------------------lp~ 326 (715)
....+|..+...++|++|+|++|.++. +|.
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 112366667777999999999999998 999
Q ss_pred cCC--CCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCC-CCc-ccCchhhcc------cccceEeccCccccccc
Q 005085 327 GQK--KAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCT-GLA-HIPSYVQNF------NKLGNMIMAGCESLRCF 395 (715)
Q Consensus 327 ~~~--~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~-~l~-~~p~~~~~l------~~L~~L~L~~~~~~~~l 395 (715)
.+. ++++|++|+|++|.+.+.+|. ++++++|++|++++|. ..+ .+|..++.+ ++|++|++++|... .+
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~i 320 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TF 320 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-cc
Confidence 999 999999999999988888986 9999999999999997 555 799888887 99999999999655 89
Q ss_pred Cc--ccCCCcccE-EEcCCCCCCCcCCCCC---CCCcEEeccCCCCcccCcccCCCCC-CCEEEcccccccccccccccC
Q 005085 396 PQ--NIHFISSIK-IDCYKCVNLKEFPRIS---GNVVELNLMCTPIEEVPLSIECLPN-LEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 396 p~--~~~~l~~L~-L~l~~~~~l~~l~~~~---~~L~~L~L~~n~l~~lp~~~~~l~~-L~~L~L~~n~~~~~lp~~~~~ 468 (715)
|. .++++++|+ |++++|.....+| .+ .+|++|++++|.++.+|..+..+++ |++|++++|.+. .+|..+..
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 98 899999999 9999976554787 43 4679999999999999999999999 999999999866 78888776
Q ss_pred CC--CccEeecCCCcCCCccchhcc-------CCcccccccccccccccccchhh-cCCCCCCEEEecCCCCCCC-----
Q 005085 469 LK--YLSSLDLSYCINLESFPEILE-------KMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGS----- 533 (715)
Q Consensus 469 l~--~L~~L~L~~n~~~~~~p~~~~-------~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~Ls~n~~~~~----- 533 (715)
++ +|++|++++|.+.+..|..+. .+++|+.|++++| .+..+|..+ ..+++|++|+|++|.+...
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 55 899999999999888888887 7889999999999 666888765 4589999999999988743
Q ss_pred --CC-------CcCeEEecCccCCCCCCCCCCC--CCCC-ceEEecCC
Q 005085 534 --LP-------ETKNWMHPYCKHYPITRVKDYS--STSP-VQLIFANC 569 (715)
Q Consensus 534 --lp-------~L~~L~l~~n~L~~~~lp~~l~--~l~~-~~L~l~~c 569 (715)
.+ +|+.|++++|.++. +|..+. .++. +.|++++|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSS
T ss_pred ccccccccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCC
Confidence 11 89999999999987 898886 7777 99999887
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.2e-27 Score=264.12 Aligned_cols=305 Identities=12% Similarity=0.078 Sum_probs=240.3
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccc-cccCCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 341 (715)
.+|++++.+..+.+..|+++++|++|+++.+. +.....+..+...++|++|++++|.+..+ |..+.++++|++|+|++
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 57788888888889999999999999998442 22122244556678999999999999976 77899999999999999
Q ss_pred CCCCcccC-C--CCCCCcceEEEEecCCCCcccCch-hhcccccceEeccCcccccccCcccCCC--cccE-EEcCCCCC
Q 005085 342 STNLTRIP-E--PSETPNLERMNLRNCTGLAHIPSY-VQNFNKLGNMIMAGCESLRCFPQNIHFI--SSIK-IDCYKCVN 414 (715)
Q Consensus 342 n~~~~~~p-~--~~~l~~L~~L~L~~n~~l~~~p~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l--~~L~-L~l~~~~~ 414 (715)
|.+....+ . +..+++|++|+|++|......|.. +.++++|++|++++|......|..+..+ .+|+ ++++++..
T Consensus 113 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l 192 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192 (455)
T ss_dssp SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC
T ss_pred CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcc
Confidence 97765443 3 889999999999999776666765 8999999999999997777677766655 5666 77777543
Q ss_pred CCcCCC------------CCCCCcEEeccCCCCcc-cCccc-------------------------------------C-
Q 005085 415 LKEFPR------------ISGNVVELNLMCTPIEE-VPLSI-------------------------------------E- 443 (715)
Q Consensus 415 l~~l~~------------~~~~L~~L~L~~n~l~~-lp~~~-------------------------------------~- 443 (715)
..++. ...+|++|++++|.+.. +|..+ .
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 193 -QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271 (455)
T ss_dssp -TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred -cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence 33221 12457778888777652 22111 1
Q ss_pred -CCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCE
Q 005085 444 -CLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQ 522 (715)
Q Consensus 444 -~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 522 (715)
..++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..|..+..+++|++
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 2368999999999988888999999999999999999888877888999999999999999443444677899999999
Q ss_pred EEecCCCCCCC-------CCCcCeEEecCccCCCCCCCCC-CCCCCC-ceEEecCCCC
Q 005085 523 LKLTGCTKLGS-------LPETKNWMHPYCKHYPITRVKD-YSSTSP-VQLIFANCLK 571 (715)
Q Consensus 523 L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp~~-l~~l~~-~~L~l~~c~~ 571 (715)
|+|++|.+.+. +++|++|++++|.+++ +|.. +..++. +.|++++|+-
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcccccChhhccccccccEEECCCCcccc--CCHhHhccCCcccEEEccCCCc
Confidence 99999987643 7889999999999988 7764 467777 9999998753
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.7e-27 Score=276.89 Aligned_cols=299 Identities=13% Similarity=0.114 Sum_probs=241.9
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCcccccc-------ccccEEEecCCCcccccc--cCCCCCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQ-------QESYRTQLSFKKVEQIWE--GQKKAPK 333 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~-------~~L~~L~L~~~~l~~lp~--~~~~l~~ 333 (715)
.++++++......|..|+++++|+.|+++.|..+....+|..+... ++|++|++++|.++.+|. .+.++++
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTT
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCC
Confidence 4555566555666788999999999999844323221345444333 489999999999999998 8999999
Q ss_pred ccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccc-cceEeccCcccccccCcccCCCcc--cE-EEc
Q 005085 334 LKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNK-LGNMIMAGCESLRCFPQNIHFISS--IK-IDC 409 (715)
Q Consensus 334 L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~-L~~L~L~~~~~~~~lp~~~~~l~~--L~-L~l 409 (715)
|++|+|++|.+. .+|.++.+++|++|+|++|... .+|..+..+++ |+.|+|++|. +..+|..+..+.. |+ |++
T Consensus 575 L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp CCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEEC
T ss_pred CCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEEC
Confidence 999999999765 8889999999999999998655 89999999999 9999999996 4488988877654 99 999
Q ss_pred CCCCCCCcCCCCC--------CCCcEEeccCCCCcccCcccC-CCCCCCEEEcccccccccccccccCC--------CCc
Q 005085 410 YKCVNLKEFPRIS--------GNVVELNLMCTPIEEVPLSIE-CLPNLEILEMSFCYSLKRLSTSICKL--------KYL 472 (715)
Q Consensus 410 ~~~~~l~~l~~~~--------~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~~~~~lp~~~~~l--------~~L 472 (715)
++|.....+|... .+|+.|++++|.+..+|..+. .+++|+.|+|++|.+. .+|..+... ++|
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc
Confidence 9987655555332 378999999999999998754 8999999999999866 666655433 399
Q ss_pred cEeecCCCcCCCccchhcc--CCcccccccccccccccccchhhcCCCCCCEEEecC------CCCCCC-------CCCc
Q 005085 473 SSLDLSYCINLESFPEILE--KMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG------CTKLGS-------LPET 537 (715)
Q Consensus 473 ~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~------n~~~~~-------lp~L 537 (715)
+.|+|++|.+. .+|..+. .+++|+.|+|++| .+..+|..+..+++|+.|+|++ |.+.+. +++|
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 99999999765 7888887 8999999999999 6666999999999999999987 554443 6789
Q ss_pred CeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCC
Q 005085 538 KNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLK 571 (715)
Q Consensus 538 ~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~ 571 (715)
+.|+|++|.+.. +|..+. +. +.|++++|+-
T Consensus 809 ~~L~Ls~N~L~~--Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 809 IQLQIGSNDIRK--VDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CEEECCSSCCCB--CCSCCC--SSSCEEECCSCTT
T ss_pred CEEECCCCCCCc--cCHhhc--CCCCEEECCCCCC
Confidence 999999999976 898865 34 9999999864
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.7e-28 Score=276.35 Aligned_cols=300 Identities=13% Similarity=0.123 Sum_probs=242.0
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCcccccc------ccccEEEecCCCcccccc--cCCCCCCc
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQ------QESYRTQLSFKKVEQIWE--GQKKAPKL 334 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~------~~L~~L~L~~~~l~~lp~--~~~~l~~L 334 (715)
.++++++......|..|+++++|++|+++.|..+....+|..+... .+|++|++++|.++.+|. .+.++++|
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L 332 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTC
T ss_pred EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCC
Confidence 4555666666666788999999999999844323322456555443 799999999999999998 89999999
Q ss_pred cEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccc-cceEeccCcccccccCcccCCCc--ccE-EEcC
Q 005085 335 KYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNK-LGNMIMAGCESLRCFPQNIHFIS--SIK-IDCY 410 (715)
Q Consensus 335 ~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~-L~~L~L~~~~~~~~lp~~~~~l~--~L~-L~l~ 410 (715)
++|++++|.+.+.+|.++.+++|++|++++|. +..+|..+..+++ |++|++++|... .+|..+..+. +|+ |+++
T Consensus 333 ~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp CEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred CEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 99999999776688888899999999999985 4488988999999 999999998644 8888777655 899 9999
Q ss_pred CCCCCCcCCCCCC----------CCcEEeccCCCCcccCccc-CCCCCCCEEEcccccccccccccccC--------CCC
Q 005085 411 KCVNLKEFPRISG----------NVVELNLMCTPIEEVPLSI-ECLPNLEILEMSFCYSLKRLSTSICK--------LKY 471 (715)
Q Consensus 411 ~~~~l~~l~~~~~----------~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~n~~~~~lp~~~~~--------l~~ 471 (715)
+|......|..+. +|++|++++|.++.+|..+ ..+++|++|++++|.+. .+|..+.. +++
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 9877666665444 7899999999999998874 56899999999999876 66654332 238
Q ss_pred ccEeecCCCcCCCccchhcc--CCcccccccccccccccccchhhcCCCCCCEEEecC------CCCCCC-------CCC
Q 005085 472 LSSLDLSYCINLESFPEILE--KMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG------CTKLGS-------LPE 536 (715)
Q Consensus 472 L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~------n~~~~~-------lp~ 536 (715)
|++|++++|.+. .+|..+. .+++|+.|+|++| .+..+|..+..+++|+.|+|++ |.+.+. +++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 999999999766 7888776 8999999999999 5656999999999999999954 555443 678
Q ss_pred cCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCC
Q 005085 537 TKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLK 571 (715)
Q Consensus 537 L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~ 571 (715)
|++|++++|.++. +|..+. +. +.|++++|+-
T Consensus 568 L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 568 LTQLQIGSNDIRK--VNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCEEECCSSCCCB--CCSCCC--TTCCEEECCSCTT
T ss_pred CCEEECCCCcCCc--cCHhHh--CcCCEEECcCCCC
Confidence 9999999999976 888765 44 9999998853
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=259.41 Aligned_cols=295 Identities=16% Similarity=0.096 Sum_probs=165.5
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..+.+..|.++++|++|+++.|. +. ...|..+...++|++|++++|.++.+|.. .+++|++|+|++|
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNR-IQ-YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CC-EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCc-cC-CcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCC
Confidence 45566666666666677777777777776332 11 11244455556777777777777776665 6677777777777
Q ss_pred CCCc-ccCC-CCCCCcceEEEEecCCCCcccCchhhccccc--ceEecc-------------------------------
Q 005085 343 TNLT-RIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKL--GNMIMA------------------------------- 387 (715)
Q Consensus 343 ~~~~-~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L--~~L~L~------------------------------- 387 (715)
.+.. .+|. ++.+++|++|++++|.... ..+..+++| +.|+++
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 5543 3443 6666666666666654322 123333333 444443
Q ss_pred ------------------------------------------------------------------------------Cc
Q 005085 388 ------------------------------------------------------------------------------GC 389 (715)
Q Consensus 388 ------------------------------------------------------------------------------~~ 389 (715)
+|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 33
Q ss_pred ccccccCccc-----CCCcccE-EEcCCCCCCCcCCC-C------CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccc
Q 005085 390 ESLRCFPQNI-----HFISSIK-IDCYKCVNLKEFPR-I------SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFC 456 (715)
Q Consensus 390 ~~~~~lp~~~-----~~l~~L~-L~l~~~~~l~~l~~-~------~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 456 (715)
.....+|..+ +.+++|+ ++++++.. .+|. . ..+++.|++++|.+..++. ...+++|++|++++|
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNN 334 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSS
T ss_pred cccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECC
Confidence 3322444444 4445555 44444332 2221 0 0234455555554443321 145666677777766
Q ss_pred cccccccccccCCCCccEeecCCCcCCC--ccchhccCCcccccccccccccccccchh-hcCCCCCCEEEecCCCCCCC
Q 005085 457 YSLKRLSTSICKLKYLSSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 457 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~Ls~n~~~~~ 533 (715)
.+.+.+|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|...+.+|.. +..+++|++|++++|.+.+.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 6666666666666677777776665554 44555666666777777666333335553 55666666666666665433
Q ss_pred ----C-CCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCC
Q 005085 534 ----L-PETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANC 569 (715)
Q Consensus 534 ----l-p~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c 569 (715)
+ ++|+.|++++|.++. +|..+..++. +.|++++|
T Consensus 415 ~~~~l~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 415 IFRCLPPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASN 454 (520)
T ss_dssp GGGSCCTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS
T ss_pred hhhhhcccCCEEECCCCcccc--cchhhhcCCCCCEEECCCC
Confidence 2 466666666666665 6666555555 66666665
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.6e-26 Score=270.33 Aligned_cols=263 Identities=15% Similarity=0.152 Sum_probs=216.2
Q ss_pred CCccccccccccEEEecCCCccc------------------ccccCC--CCCCccEEeecCCCCCcccCC-CCCCCcceE
Q 005085 301 MSSKVHLQQESYRTQLSFKKVEQ------------------IWEGQK--KAPKLKYVDLNHSTNLTRIPE-PSETPNLER 359 (715)
Q Consensus 301 l~~~l~~~~~L~~L~L~~~~l~~------------------lp~~~~--~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~ 359 (715)
+|..+...++|++|+|++|.++. +|..+. ++++|++|+|++|.+.+.+|. ++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66667777899999999999998 999988 999999999999988888886 899999999
Q ss_pred EEEecCC-CCc-ccCchhhccc-------ccceEeccCcccccccCc--ccCCCcccE-EEcCCCCCCCcCCCC--CCCC
Q 005085 360 MNLRNCT-GLA-HIPSYVQNFN-------KLGNMIMAGCESLRCFPQ--NIHFISSIK-IDCYKCVNLKEFPRI--SGNV 425 (715)
Q Consensus 360 L~L~~n~-~l~-~~p~~~~~l~-------~L~~L~L~~~~~~~~lp~--~~~~l~~L~-L~l~~~~~l~~l~~~--~~~L 425 (715)
|+|++|. ..+ .+|..+++++ +|++|+|++|... .+|. .++++++|+ |++++|. +..+|.. ..+|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcc
Confidence 9999997 555 6888887776 9999999998655 8898 899999999 9999975 4477722 2467
Q ss_pred cEEeccCCCCcccCcccCCCCC-CCEEEcccccccccccccccCCCC--ccEeecCCCcCCCccchh---cc--CCcccc
Q 005085 426 VELNLMCTPIEEVPLSIECLPN-LEILEMSFCYSLKRLSTSICKLKY--LSSLDLSYCINLESFPEI---LE--KMELLE 497 (715)
Q Consensus 426 ~~L~L~~n~l~~lp~~~~~l~~-L~~L~L~~n~~~~~lp~~~~~l~~--L~~L~L~~n~~~~~~p~~---~~--~l~~L~ 497 (715)
+.|+|++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|.. ++ .+++|+
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 8999999999999999999998 999999999866 78887777654 999999999887765532 22 345889
Q ss_pred cccccccccccccchhhc-CCCCCCEEEecCCCCCCC-------C-------CCcCeEEecCccCCCCCCCCCCC--CCC
Q 005085 498 EINLEEASNIKELPSSIE-NLEGLKQLKLTGCTKLGS-------L-------PETKNWMHPYCKHYPITRVKDYS--STS 560 (715)
Q Consensus 498 ~L~L~~n~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~-------l-------p~L~~L~l~~n~L~~~~lp~~l~--~l~ 560 (715)
.|++++| .+..+|..+. .+++|+.|+|++|.+... . ++|+.|+|++|.|+. +|..+. .++
T Consensus 677 ~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~--lp~~l~~~~l~ 753 (876)
T 4ecn_A 677 TVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLP 753 (876)
T ss_dssp EEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC--CCGGGSTTTCT
T ss_pred EEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc--chHHhhhccCC
Confidence 9999998 6668887664 788999999999887643 1 178899999998886 888876 777
Q ss_pred C-ceEEecCC
Q 005085 561 P-VQLIFANC 569 (715)
Q Consensus 561 ~-~~L~l~~c 569 (715)
. +.|++++|
T Consensus 754 ~L~~L~Ls~N 763 (876)
T 4ecn_A 754 YLSNMDVSYN 763 (876)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEEeCCC
Confidence 7 88888877
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.3e-26 Score=260.42 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=80.2
Q ss_pred CCcEEeccCCCCccc---CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc-hhccCCcccccc
Q 005085 424 NVVELNLMCTPIEEV---PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP-EILEKMELLEEI 499 (715)
Q Consensus 424 ~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L 499 (715)
+|++|++++|.++.+ |..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..| ..+..+++|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 455566666655544 444555666666666665532 344556666666666666665555444 455566666666
Q ss_pred cccccccccccchhhcCCCCCCEEEecCCCCCC--------CCCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCC
Q 005085 500 NLEEASNIKELPSSIENLEGLKQLKLTGCTKLG--------SLPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANC 569 (715)
Q Consensus 500 ~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~--------~lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c 569 (715)
++++|...+..|..+..+++|++|++++|.+.+ .+++|+.|++++|.+++ ..|..+..++. +.|++++|
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCC
Confidence 666664444455555566666666666665432 14556666666666554 22444555555 55666555
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-25 Score=242.38 Aligned_cols=290 Identities=16% Similarity=0.124 Sum_probs=228.6
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCC-ccccccccccEEEecCCCcccccc-cCCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMS-SKVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~-~~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~ 340 (715)
.+++.++.+..+++..|.++++|++|+++.+. +..++ ..+...++|++|++++|.++.++. .+..+++|++|+|+
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 34555566666777778889999999988332 22222 345566789999999999887754 47889999999999
Q ss_pred CCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCc
Q 005085 341 HSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKE 417 (715)
Q Consensus 341 ~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~ 417 (715)
+|.+. .+|. +..+++|++|++++|......|..+..+++|++|++++|... .++ +..+++|+ ++++++ .+..
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~L~~L~l~~n-~l~~ 200 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN-LLST 200 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTTCSEEECCSS-CCSE
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccccceeecccc-cccc
Confidence 88554 5554 688899999999988666555667888999999999988543 332 45577888 888875 3444
Q ss_pred CCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccc
Q 005085 418 FPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLE 497 (715)
Q Consensus 418 l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 497 (715)
++ ...+|++|++++|.+..+|.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 201 ~~-~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 201 LA-IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp EE-CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cC-CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 32 345789999999999988764 358999999999987653 5788999999999999988888888999999999
Q ss_pred cccccccccccccchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 498 EINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 498 ~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
.|++++| .+..+|..+..+++|++|+|++|++... +++|+.|++++|+++. +| +..++. +.|++++++
T Consensus 276 ~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~--~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 276 RLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC--CC--CCTTCCCSEEECCSSC
T ss_pred EEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce--eC--chhhccCCEEEcCCCC
Confidence 9999999 7888888888999999999999988754 6799999999999988 65 556666 899999874
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=3.1e-25 Score=254.06 Aligned_cols=303 Identities=15% Similarity=0.157 Sum_probs=194.5
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccc-cccCCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 341 (715)
.++++++.+..+.+.+|+++++|++|+++.|... ...|..+....+|++|++++|.++.+ |..+.++++|++|++++
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS--EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCccc--ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC
Confidence 3445555555555556666666666666522111 12233444556677777777777665 45567777777777777
Q ss_pred CCCCc-ccCCCCCCCcceEEEEecCCCCcccCchhhcccccc--eEeccCcccccccCcccCCCccc-------------
Q 005085 342 STNLT-RIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLG--NMIMAGCESLRCFPQNIHFISSI------------- 405 (715)
Q Consensus 342 n~~~~-~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~--~L~L~~~~~~~~lp~~~~~l~~L------------- 405 (715)
|.+.. ..|.+..+++|++|++++|......|..++.+++|+ .|++++|......|..+. ..+|
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHH
T ss_pred CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHH
Confidence 75543 335555577777777777755444456677777777 677777754444443332 2333
Q ss_pred ---------------------------------------E-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCcccCcc
Q 005085 406 ---------------------------------------K-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIEEVPLS 441 (715)
Q Consensus 406 ---------------------------------------~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~~lp~~ 441 (715)
+ ++++++. +..++. ...+|++|++++|.++++|..
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~ 296 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSG 296 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSS
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChh
Confidence 3 4444432 222322 234678888888888888888
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccch-hccCCccccccccccccccccc---chhhcCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPE-ILEKMELLEEINLEEASNIKEL---PSSIENL 517 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~l---p~~l~~l 517 (715)
+..+++|++|++++|.+.+..|..+..+++|++|++++|...+.+|. .++.+++|++|++++| .+..+ |..+..+
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNL 375 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTC
T ss_pred hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccC
Confidence 88888888888888887777777788888888888888877666654 3777888888888887 44433 5567778
Q ss_pred CCCCEEEecCCCCCC-------CCCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 518 EGLKQLKLTGCTKLG-------SLPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 518 ~~L~~L~Ls~n~~~~-------~lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
++|++|++++|.+.. .+++|++|++++|.++....+..+..++. +.|++++|.
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 888888888876532 26677888888877665222334666666 777777764
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.8e-25 Score=253.49 Aligned_cols=301 Identities=15% Similarity=0.085 Sum_probs=196.4
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..+.+..|.++++|++|+++.|. +. ...|..+...++|++|++++|.++.+|.. .+++|++|+|++|
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNR-IR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN 131 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CC-EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCC-CC-cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC
Confidence 56777777777778888888889988888442 11 12244556667888888888888888877 7888888888888
Q ss_pred CCCc-ccCC-CCCCCcceEEEEecCCCCcccCchhhccccc--ceEeccCccc--ccccCcccCC---------------
Q 005085 343 TNLT-RIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKL--GNMIMAGCES--LRCFPQNIHF--------------- 401 (715)
Q Consensus 343 ~~~~-~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L--~~L~L~~~~~--~~~lp~~~~~--------------- 401 (715)
.+.. .+|. ++++++|++|++++|.... ..+..+++| +.|++++|.. ....|..+..
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 6544 2333 7888888888888875433 234444555 7777777654 3333333222
Q ss_pred -----------CcccE-EEcC-------------------------------------------------------CCCC
Q 005085 402 -----------ISSIK-IDCY-------------------------------------------------------KCVN 414 (715)
Q Consensus 402 -----------l~~L~-L~l~-------------------------------------------------------~~~~ 414 (715)
+++|+ ++++ +|..
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 22333 3333 3222
Q ss_pred CCcCCCCC----------------------------------CCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccc
Q 005085 415 LKEFPRIS----------------------------------GNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLK 460 (715)
Q Consensus 415 l~~l~~~~----------------------------------~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~ 460 (715)
...+|... .++++|++++|.+..++. ...+++|++|++++|.+.+
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCcccc
Confidence 22233221 123444444444332221 1567788888888888777
Q ss_pred cccccccCCCCccEeecCCCcCCC--ccchhccCCcccccccccccccccccchh-hcCCCCCCEEEecCCCCCCC----
Q 005085 461 RLSTSICKLKYLSSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGS---- 533 (715)
Q Consensus 461 ~lp~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~Ls~n~~~~~---- 533 (715)
..|..+.++++|++|++++|.+.+ .+|..++.+++|+.|++++|...+.+|.. +..+++|++|++++|.+.+.
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 777788888888888888886554 34556778888888888888444436653 66778888888888877543
Q ss_pred C-CCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 534 L-PETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 534 l-p~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
+ ++|+.|++++|.++. +|.++..++. +.|++++| +++.
T Consensus 448 l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 448 LPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASN-QLKS 487 (562)
T ss_dssp CCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSS-CCCC
T ss_pred hcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCC-CCCC
Confidence 3 478888888888776 7877777766 77888776 3444
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=6.9e-26 Score=256.29 Aligned_cols=303 Identities=16% Similarity=0.120 Sum_probs=187.1
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccccccc-CCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 341 (715)
.++++++.+..+.+..|.++++|++|+++.|. +. ...|..+....+|++|++++|.++.++.. +..+++|++|+|++
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSR-IN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCC-cC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 44555555555556666666777777666331 11 11223344445666666666666655443 56666666666666
Q ss_pred CCCCc-ccC-CCCCCCcceEEEEecCCCCcccC-chhhcccccceEeccCcccccccCcccCCCcccE-EEc--------
Q 005085 342 STNLT-RIP-EPSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDC-------- 409 (715)
Q Consensus 342 n~~~~-~~p-~~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l-------- 409 (715)
|.+.. ..| .++.+++|++|++++|...+.+| ..+.++++|++|++++|......|..+..+++|+ |++
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 64432 222 25666666666666665445554 3556666666666666654444555444444443 333
Q ss_pred ----------------CCCCCCCc--------------------------------------------------------
Q 005085 410 ----------------YKCVNLKE-------------------------------------------------------- 417 (715)
Q Consensus 410 ----------------~~~~~l~~-------------------------------------------------------- 417 (715)
+++.....
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 22211000
Q ss_pred -C------------------------C------------CCCCCCcEEeccCCCCcccCccc-CCCCCCCEEEccccccc
Q 005085 418 -F------------------------P------------RISGNVVELNLMCTPIEEVPLSI-ECLPNLEILEMSFCYSL 459 (715)
Q Consensus 418 -l------------------------~------------~~~~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~n~~~ 459 (715)
+ | ...++|+.|++++|.+..+|..+ ..+++|++|++++|.+.
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 0 0 01134566677777777777665 46889999999999887
Q ss_pred ccccc---cccCCCCccEeecCCCcCCCccc--hhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-
Q 005085 460 KRLST---SICKLKYLSSLDLSYCINLESFP--EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS- 533 (715)
Q Consensus 460 ~~lp~---~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~- 533 (715)
+.+|. .++.+++|++|++++|.+.+..+ ..+..+++|++|++++| .++.+|..+..+++|++|++++|.+...
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCccccc
Confidence 76643 36788899999999986654322 45788899999999998 7778888888888899999988886542
Q ss_pred ---CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 534 ---LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 534 ---lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
.++|+.|++++|.+++ ++. .++. +.|++++| +++.
T Consensus 427 ~~~~~~L~~L~Ls~N~l~~--~~~---~l~~L~~L~Ls~N-~l~~ 465 (549)
T 2z81_A 427 TCIPQTLEVLDVSNNNLDS--FSL---FLPRLQELYISRN-KLKT 465 (549)
T ss_dssp TTSCTTCSEEECCSSCCSC--CCC---CCTTCCEEECCSS-CCSS
T ss_pred chhcCCceEEECCCCChhh--hcc---cCChhcEEECCCC-ccCc
Confidence 3467777777777766 443 3333 67777766 4443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2e-25 Score=254.67 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=232.5
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccccccc-CCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 341 (715)
.+++.++.+..+++..|.++++|++|+++.|. +. ...|..+....+|++|+|++|.+..+|.. +..+++|++|+|++
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSC-CC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 45566666667778888899999999998332 21 12233556668899999999999877654 68899999999999
Q ss_pred CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC
Q 005085 342 STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP 419 (715)
Q Consensus 342 n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~ 419 (715)
|.+....+. ++.+++|++|+|++|......|..++.+++|++|++++|... .++ ++.+++|+ |+++++ .+..++
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n-~l~~l~ 208 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN-LLSTLA 208 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSS-CCSEEE
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccC-cccccc
Confidence 965533334 688999999999998766666678899999999999998543 333 45577888 888875 344443
Q ss_pred CCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccc
Q 005085 420 RISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEI 499 (715)
Q Consensus 420 ~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 499 (715)
...+|+.|++++|.+..+|..+ .++|+.|++++|.+.+ +..+..+++|+.|+|++|.+.+..|..++.+++|+.|
T Consensus 209 -~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 209 -IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp -CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred -CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 3457899999999999887654 4789999999998765 3678899999999999999888889999999999999
Q ss_pred cccccccccccchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 500 NLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 500 ~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
+|++| .+..+|..+..+++|+.|+|++|.+... +++|+.|++++|.++. +| +..++. +.|++++|+
T Consensus 284 ~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~--~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 284 YISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC--CC--CCTTCCCSEEECCSSC
T ss_pred ECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC--cC--hhhcCCCCEEEeeCCC
Confidence 99999 7788888888899999999999998764 6789999999999987 55 555666 899999885
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.6e-25 Score=256.51 Aligned_cols=305 Identities=13% Similarity=0.053 Sum_probs=245.4
Q ss_pred EEecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccc-cccCCCCCCccEEeec
Q 005085 262 IFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLN 340 (715)
Q Consensus 262 ~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~ 340 (715)
..+|++++.+..+.+..|+++++|++|+++.|... ...|..+....+|++|++++|.+..+ |..+.++++|++|+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 46788888888888999999999999999944221 23456667778999999999999866 6789999999999999
Q ss_pred CCCCCcccC-CCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE---EEcCCCCCCC
Q 005085 341 HSTNLTRIP-EPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK---IDCYKCVNLK 416 (715)
Q Consensus 341 ~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~---L~l~~~~~l~ 416 (715)
+|.+....+ .++.+++|++|++++|......+..+..+++|++|++++|......|..+..+++|+ +++++|....
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 997655434 489999999999999866553334455599999999999966555566666677665 6777764332
Q ss_pred cCCCCC------------------------------------------------------CCCcEEeccCCCCcccCcc-
Q 005085 417 EFPRIS------------------------------------------------------GNVVELNLMCTPIEEVPLS- 441 (715)
Q Consensus 417 ~l~~~~------------------------------------------------------~~L~~L~L~~n~l~~lp~~- 441 (715)
..|..+ .+++.|++++|.++.++..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 222111 1567889999999988766
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchh-hcCCCCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSS-IENLEGL 520 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L 520 (715)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.....+|.. +..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 889999999999999855 78889999999999999999888777888999999999999999666577654 8899999
Q ss_pred CEEEecCCCCCC---------CCCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 521 KQLKLTGCTKLG---------SLPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 521 ~~L~Ls~n~~~~---------~lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
++|++++|.+.. .+++|++|++++|.++. ..|..+..++. +.|++++|.
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECTTCC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECCCCc
Confidence 999999998753 37899999999999876 24677888887 999998874
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=251.19 Aligned_cols=294 Identities=16% Similarity=0.119 Sum_probs=221.0
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCcccc-cccCCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~ 340 (715)
.+|++++....++.. +. ++|++|+++.|. +..+ |..+....+|++|++++|.++.+ |..+.++++|++|+|+
T Consensus 4 ~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKD-LS--QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp EEECTTSCCSSCCCS-CC--TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred eEecCCCCccccccc-cc--ccccEEECCCCc---ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 577888776666543 33 899999999443 2233 34556678999999999999977 6789999999999999
Q ss_pred CCCCCcccCCCCCCCcceEEEEecCCCCc-ccCchhhcccccceEeccCcccccccCcccCCCccc--E-EEcCCCCC--
Q 005085 341 HSTNLTRIPEPSETPNLERMNLRNCTGLA-HIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSI--K-IDCYKCVN-- 414 (715)
Q Consensus 341 ~n~~~~~~p~~~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~-L~l~~~~~-- 414 (715)
+|.+. .+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..+..+++| + |++++|..
T Consensus 78 ~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 78 HNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 99654 67766 89999999999997665 478999999999999999986443 234445555 6 66666543
Q ss_pred CCcCCCC-------------------------------------------------------------------------
Q 005085 415 LKEFPRI------------------------------------------------------------------------- 421 (715)
Q Consensus 415 l~~l~~~------------------------------------------------------------------------- 421 (715)
....|..
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 1111111
Q ss_pred -------------CCCCcEEeccCCCCc-ccCccc-----CCCCCCCEEEcccccccccccc-c----------------
Q 005085 422 -------------SGNVVELNLMCTPIE-EVPLSI-----ECLPNLEILEMSFCYSLKRLST-S---------------- 465 (715)
Q Consensus 422 -------------~~~L~~L~L~~n~l~-~lp~~~-----~~l~~L~~L~L~~n~~~~~lp~-~---------------- 465 (715)
..+|++|++++|.+. .+|..+ +.+++|+.+++++|.+ .+|. .
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 115667777777776 677766 6666666666666554 2331 0
Q ss_pred ---------ccCCCCccEeecCCCcCCCccchhccCCccccccccccccccc---ccchhhcCCCCCCEEEecCCCCCCC
Q 005085 466 ---------ICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIK---ELPSSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 466 ---------~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
...+++|++|++++|.+.+..|..++.+++|+.|++++| .+. .+|..+..+++|++|+|++|.+.+.
T Consensus 311 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred CCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 168899999999999988889999999999999999999 555 5667899999999999999998762
Q ss_pred --------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 534 --------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 534 --------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
+++|++|++++|.+++ .+|..+. +. +.|++++| +++.
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~--~~L~~L~Ls~N-~l~~ 435 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTD-TIFRCLP--PRIKVLDLHSN-KIKS 435 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCG-GGGGSCC--TTCCEEECCSS-CCCC
T ss_pred cccchhccCccCCEEECcCCCCCc-chhhhhc--ccCCEEECCCC-cccc
Confidence 6789999999999865 3555553 33 89999988 4554
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6e-25 Score=233.45 Aligned_cols=285 Identities=13% Similarity=0.153 Sum_probs=222.0
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHST 343 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~ 343 (715)
+++.++....+. .+..+++|++|+++.+ ....++. +...++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 49 L~l~~~~i~~~~--~~~~~~~L~~L~l~~n---~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGN---QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSS---CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred EEEeCCccccch--hhhhcCCccEEEccCC---ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 444454444443 4788999999999843 2233443 556689999999999998875 58889999999999985
Q ss_pred CCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC--C
Q 005085 344 NLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP--R 420 (715)
Q Consensus 344 ~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~--~ 420 (715)
+ ..++.+..+++|++|++++|.....++ .+..+++|++|++++|.. ..++. +..+++|+ |++++|. +..++ .
T Consensus 122 i-~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~ 196 (347)
T 4fmz_A 122 I-SDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQ-IEDISPLA 196 (347)
T ss_dssp C-CCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSC-CCCCGGGG
T ss_pred c-cCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCc-cccccccc
Confidence 4 455668899999999999986666554 488999999999999854 44444 77789999 9998864 44444 3
Q ss_pred CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccc
Q 005085 421 ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEIN 500 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 500 (715)
...+|+.|++++|.+..++. +..+++|++|++++|.+....+ +..+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 45678999999999988776 8889999999999998655443 8899999999999986554 4 3578899999999
Q ss_pred ccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 501 LEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 501 L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
+++| .+..++ .+..+++|+.|++++|.+... +|+|++|++++|++++ +|+ +..++. +.|++++|+
T Consensus 272 l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 272 VGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC--CGG-GGGCTTCSEESSSCC-
T ss_pred ccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc--ccC-hhhhhccceeehhhhc
Confidence 9999 677664 588899999999999988654 7899999999999887 655 667777 889998874
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=260.61 Aligned_cols=300 Identities=14% Similarity=0.089 Sum_probs=216.1
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCcccc-cccCCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~ 340 (715)
.+|++.+.+..+.+..|.++++|++|+++.|.. ...+ |..+....+|++|+|++|.+..+ |..+.++++|++|+|+
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 456667777777788888999999999884422 1223 55566667888888888888866 6778888888888888
Q ss_pred CCCCCcccCC---CCCCCcceEEEEecCCCCcccC-chhhcccccceEeccCcccccccCcccCCC--cc----------
Q 005085 341 HSTNLTRIPE---PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAGCESLRCFPQNIHFI--SS---------- 404 (715)
Q Consensus 341 ~n~~~~~~p~---~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l--~~---------- 404 (715)
+|.+...+|. +..+++|++|+|++|......+ ..++++++|++|++++|......|..+..+ ++
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 8876654543 7888888888888886655433 568888888888888876544444333322 22
Q ss_pred --------------------cE-EEcCCCCCCCcCCC-----------------------------------------CC
Q 005085 405 --------------------IK-IDCYKCVNLKEFPR-----------------------------------------IS 422 (715)
Q Consensus 405 --------------------L~-L~l~~~~~l~~l~~-----------------------------------------~~ 422 (715)
|+ |++++|......+. ..
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 55 66655521111110 01
Q ss_pred CCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 423 GNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.+|+.|++++|.+..+ |..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 4677888888887765 445788888888888888887777778888888888888888777777778888888888888
Q ss_pred cccccccccc-hhhcCCCCCCEEEecCCCCCCC--CCCcCeEEecCccCCCCCCCCCCCCCCCceEEecCC
Q 005085 502 EEASNIKELP-SSIENLEGLKQLKLTGCTKLGS--LPETKNWMHPYCKHYPITRVKDYSSTSPVQLIFANC 569 (715)
Q Consensus 502 ~~n~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~--lp~L~~L~l~~n~L~~~~lp~~l~~l~~~~L~l~~c 569 (715)
++| .+..++ ..+..+++|++|+|++|.+... +|+|+.|++++|.++. +|.....+ +.|+++++
T Consensus 346 ~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~--l~~~~~~l--~~L~ls~N 411 (844)
T 3j0a_A 346 QKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT--LPKINLTA--NLIHLSEN 411 (844)
T ss_dssp CSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCC--CCCCCTTC--CEEECCSC
T ss_pred CCC-CCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccc--cccccccc--ceeecccC
Confidence 888 555554 4577888899999988887654 7788899999988887 77653322 67777765
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=243.56 Aligned_cols=281 Identities=16% Similarity=0.152 Sum_probs=187.7
Q ss_pred CCccEEEEeecCccccccC-CccccccccccEEEecCCCcccc-cccCCCCCCccEEeecCCCCCcccC-C-CCCCCcce
Q 005085 283 SNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNHSTNLTRIP-E-PSETPNLE 358 (715)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~~~~~~p-~-~~~l~~L~ 358 (715)
++++.|+++.|. +..+ +..+...++|++|+|++|.++.+ |..+.++++|++|+|++|.+. .+| . +.++++|+
T Consensus 32 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCC
Confidence 456677766331 1112 23344456677777777777655 556677777777777777443 333 2 56777777
Q ss_pred EEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC----CCCCCCcEEeccCC
Q 005085 359 RMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP----RISGNVVELNLMCT 433 (715)
Q Consensus 359 ~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~----~~~~~L~~L~L~~n 433 (715)
+|+|++|......|..+..+++|+.|++++|......|..+..+++|+ |++++| .++.+| ....+|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC
Confidence 777777665555556677777777777777655555555666677777 777765 334443 23456778888888
Q ss_pred CCcccCc-ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc-
Q 005085 434 PIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP- 511 (715)
Q Consensus 434 ~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp- 511 (715)
.+..++. .+..+++|++|++++|...+.+|.......+|++|++++|.+....+..+..+++|+.|+|++| .+..++
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 265 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEG 265 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccCh
Confidence 8876655 4777888888888888777777777666778888888888655433356778888888888888 444443
Q ss_pred hhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCCCCCCCC-CCCCCC-ceEEecCCCC
Q 005085 512 SSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYPITRVKD-YSSTSP-VQLIFANCLK 571 (715)
Q Consensus 512 ~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp~~-l~~l~~-~~L~l~~c~~ 571 (715)
..+..+++|+.|+|++|.+... +++|+.|++++|.++. +|.. +..++. +.|++++++-
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT--LEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC--CCGGGBSCGGGCCEEECCSSCE
T ss_pred hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce--eCHhHcCCCcccCEEEccCCCc
Confidence 4577788888888888876543 6778888888888777 5543 455555 7788877653
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.1e-25 Score=243.85 Aligned_cols=285 Identities=15% Similarity=0.055 Sum_probs=217.4
Q ss_pred EecCCCCccc-ccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccc-cccc--CCCCCCccEEe
Q 005085 263 FLDLSKIEEI-NLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQ-IWEG--QKKAPKLKYVD 338 (715)
Q Consensus 263 ~l~l~~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~ 338 (715)
.++++++... .+.+..|.++++|++|+++.|... ...|..+....+|++|++++|.++. +|.. +..+++|++|+
T Consensus 58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 135 (455)
T 3v47_A 58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL--QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135 (455)
T ss_dssp EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC--EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEE
T ss_pred EEECcCCcccceECcccccccccCCEEeCCCCccC--ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEE
Confidence 5566666554 567888999999999999844221 2235566667899999999999984 4544 88999999999
Q ss_pred ecCCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcc--cccceEeccCcccccccCcc--------cCCCcccE
Q 005085 339 LNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNF--NKLGNMIMAGCESLRCFPQN--------IHFISSIK 406 (715)
Q Consensus 339 L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l--~~L~~L~L~~~~~~~~lp~~--------~~~l~~L~ 406 (715)
|++|.+....|. +..+++|++|++++|......|..+..+ .+|+.|++++|......+.. +..+++|+
T Consensus 136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp CCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred CCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceee
Confidence 999987766675 7899999999999997766666666665 45556666555332211111 12344555
Q ss_pred -EEcCCCCC---------------------------CCc------CCC---------CCCCCcEEeccCCCCccc-Cccc
Q 005085 407 -IDCYKCVN---------------------------LKE------FPR---------ISGNVVELNLMCTPIEEV-PLSI 442 (715)
Q Consensus 407 -L~l~~~~~---------------------------l~~------l~~---------~~~~L~~L~L~~n~l~~l-p~~~ 442 (715)
|++++|.. ... ++. ...+|++|++++|.+..+ |..+
T Consensus 216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 55555422 111 000 124789999999999965 5668
Q ss_pred CCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCE
Q 005085 443 ECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQ 522 (715)
Q Consensus 443 ~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 522 (715)
+.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|++|++++|...+..|..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 99999999999999988888889999999999999999887777888999999999999999444445778999999999
Q ss_pred EEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 523 LKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 523 L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
|+|++|.+... +++|+.|++++|+++.
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999988653 7789999999999876
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=245.48 Aligned_cols=285 Identities=14% Similarity=0.095 Sum_probs=225.1
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccccccc-CCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 341 (715)
.+|++++.+..+.+..|.++++|++|+++.|. +. ...|..+....+|++|+|++|.++.+|.. +.++++|++|+|++
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENI-VS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCc-cC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 57788888888888899999999999998432 21 22355566678999999999999988865 68899999999999
Q ss_pred CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC
Q 005085 342 STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP 419 (715)
Q Consensus 342 n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~ 419 (715)
|.+....+. +..+++|++|++++|......|..+..+++|+.|++++|......+..+..+++|+ |+++++..-...+
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 977666665 88999999999999876666677889999999999999854443445678889999 9998865433222
Q ss_pred ---CCCCCCcEEeccCCCC-cccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcc
Q 005085 420 ---RISGNVVELNLMCTPI-EEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMEL 495 (715)
Q Consensus 420 ---~~~~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 495 (715)
....+|++|++++|.. ..+|.......+|++|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 2345789999988654 477777777779999999999876555567889999999999999877666677888999
Q ss_pred cccccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 496 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 496 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
|+.|+|++|......|..+..+++|+.|+|++|.+... +++|+.|++++|+++.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999999954455577888999999999999987654 5689999999998664
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.7e-25 Score=233.87 Aligned_cols=215 Identities=19% Similarity=0.321 Sum_probs=107.9
Q ss_pred ccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 311 SYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 311 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+++|++++|.++.+|..+..+++|++|+|++|.+. .+|. ++.+++|++|+|++|... .+|..++++++|++|++++|
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 33444444444444444444555555555544333 3333 444455555555544322 44444555555555555554
Q ss_pred ccccccCcccCC---------CcccE-EEcCCCCCCCcCCCC---CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccc
Q 005085 390 ESLRCFPQNIHF---------ISSIK-IDCYKCVNLKEFPRI---SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFC 456 (715)
Q Consensus 390 ~~~~~lp~~~~~---------l~~L~-L~l~~~~~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 456 (715)
.....+|..+.. +++|+ |++++| .++.+|.. ..+|++|++++|.++.+|..++.+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 444444443321 22222 111111 11111110 11223555555555656555666666666666666
Q ss_pred cccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCC
Q 005085 457 YSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGC 528 (715)
Q Consensus 457 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n 528 (715)
...+.+|..++++++|++|++++|...+.+|..++.+++|+.|+|++|+..+.+|.+++++++|+.+++..+
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 666666666666666666666666666666666666666666666666556666666666666666655543
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.9e-26 Score=237.45 Aligned_cols=238 Identities=13% Similarity=0.108 Sum_probs=160.5
Q ss_pred cccEEEecCCCcc---cccccCCCCCCccEEeecC-CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceE
Q 005085 310 ESYRTQLSFKKVE---QIWEGQKKAPKLKYVDLNH-STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNM 384 (715)
Q Consensus 310 ~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~L~~-n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 384 (715)
++++|+++++.+. .+|..+.++++|++|+|++ |.+...+|. ++.+++|++|+|++|...+.+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555666666665 4666677777777777773 555555564 6677777777777765555667777777777777
Q ss_pred eccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCCC----CCCcEEeccCCCCc-ccCcccCCCCCCCEEEcccccc
Q 005085 385 IMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRIS----GNVVELNLMCTPIE-EVPLSIECLPNLEILEMSFCYS 458 (715)
Q Consensus 385 ~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~----~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~ 458 (715)
++++|.....+|..+..+++|+ |++++|.....+|..+ .+|++|++++|.++ .+|..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 7777755556666666666666 5555543322333322 24567777777777 5666677776 88888888777
Q ss_pred cccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-----
Q 005085 459 LKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS----- 533 (715)
Q Consensus 459 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----- 533 (715)
.+..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|...+.+|..+..+++|++|+|++|++.+.
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 777777777778888888887776655554 66777788888887755557777777777788888877776543
Q ss_pred -CCCcCeEEecCcc-CCC
Q 005085 534 -LPETKNWMHPYCK-HYP 549 (715)
Q Consensus 534 -lp~L~~L~l~~n~-L~~ 549 (715)
+++|+.|++++|+ +.+
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 4457777777777 655
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.5e-25 Score=233.02 Aligned_cols=221 Identities=16% Similarity=0.239 Sum_probs=150.6
Q ss_pred CCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEE
Q 005085 283 SNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMN 361 (715)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 361 (715)
.+++.|+++.+ ....+|..+....+|++|++++|.++.+|..+..+++|++|+|++|.+. .+|. +..+++|++|+
T Consensus 81 ~~l~~L~L~~n---~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSV---PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESS---CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCC---CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45556666522 1224454444455666666666666666666666666666666666443 4443 55666666666
Q ss_pred EecCCCCcccCchhhc---------ccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCC---CCCCcEE
Q 005085 362 LRNCTGLAHIPSYVQN---------FNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI---SGNVVEL 428 (715)
Q Consensus 362 L~~n~~l~~~p~~~~~---------l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~---~~~L~~L 428 (715)
+++|...+.+|..+.. +++|++|++++|. +..+|..++.+++|+ |++++|. +..+|.. ..+|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEE
Confidence 6666555555554443 6666666666653 335565566666666 6666543 3334432 2456788
Q ss_pred eccCCCCc-ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccc
Q 005085 429 NLMCTPIE-EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNI 507 (715)
Q Consensus 429 ~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 507 (715)
++++|.+. .+|..++.+++|++|++++|...+.+|..+.++++|++|++++|...+.+|..++.+++|+.+.+..+ ..
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~-~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG-GS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH-HH
Confidence 88886655 67888999999999999999999999999999999999999999999999999999999999999877 44
Q ss_pred ccc
Q 005085 508 KEL 510 (715)
Q Consensus 508 ~~l 510 (715)
..+
T Consensus 314 ~~l 316 (328)
T 4fcg_A 314 AQL 316 (328)
T ss_dssp CC-
T ss_pred HHH
Confidence 433
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=6.7e-25 Score=251.28 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=213.3
Q ss_pred ccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceE
Q 005085 305 VHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNM 384 (715)
Q Consensus 305 l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 384 (715)
+....+|+.|+++++.+..+| .+..+++|++|++++|.+ +.+|.+ .+++|++|++++|...... .+..+++|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 344578999999999998888 888899999999999966 788888 8999999999998665544 56788999999
Q ss_pred eccCcccccc--cCcccCCCcccE-EEcCCCCCCCcCCCC---CCCCcEEeccCCCCcccCc--ccCCCCCCCEEEcccc
Q 005085 385 IMAGCESLRC--FPQNIHFISSIK-IDCYKCVNLKEFPRI---SGNVVELNLMCTPIEEVPL--SIECLPNLEILEMSFC 456 (715)
Q Consensus 385 ~L~~~~~~~~--lp~~~~~l~~L~-L~l~~~~~l~~l~~~---~~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n 456 (715)
++++|..... .|..+..+++|+ |++++|. +..+|.. ..+|++|++++|.+..++. .+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 9999854433 367778889999 9998865 5555543 3567999999999887654 5888999999999999
Q ss_pred cccccccccccCCCCccEeecCCCcCCC-ccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC--
Q 005085 457 YSLKRLSTSICKLKYLSSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-- 533 (715)
Q Consensus 457 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-- 533 (715)
.+.+..|..+.++++|++|++++|.+.+ .+|..++.+++|+.|++++|...+..|..+..+++|++|+|++|++.+.
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 9888888889999999999999998776 3788889999999999999955555567788999999999999987654
Q ss_pred -----CCCcCeEEecCccCCCCCCCCCCCCCCC--ceEEecCCCCCC
Q 005085 534 -----LPETKNWMHPYCKHYPITRVKDYSSTSP--VQLIFANCLKLN 573 (715)
Q Consensus 534 -----lp~L~~L~l~~n~L~~~~lp~~l~~l~~--~~L~l~~c~~l~ 573 (715)
+++|+.|++++|.++. +|..+..++. +.|++++++-..
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~~--~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCCC--EESCGGGSCTTCCEEECCSCCCCC
T ss_pred HHccCCCcCCEEECCCCcCcc--cCHhHhhhcccCcEEEccCCCccc
Confidence 6789999999999987 8888887763 889998876543
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=9.3e-25 Score=230.54 Aligned_cols=277 Identities=11% Similarity=0.066 Sum_probs=218.4
Q ss_pred CCccEEEEeecCccccccCCccccccccccEEEecCCCccccc-ccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEE
Q 005085 283 SNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIW-EGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERM 360 (715)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L 360 (715)
.+++.++++.+ ....+|..+ ..+|++|++++|.++.++ ..+.++++|++|+|++|.+....|. +..+++|++|
T Consensus 33 c~l~~l~~~~~---~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDL---GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSS---CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCC---CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 36788888733 233455443 268999999999999875 4689999999999999976655564 8999999999
Q ss_pred EEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCC--cCCCCCC--CCcEEeccCCCC
Q 005085 361 NLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLK--EFPRISG--NVVELNLMCTPI 435 (715)
Q Consensus 361 ~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~--~l~~~~~--~L~~L~L~~n~l 435 (715)
++++|. +..+|..+. ++|++|++++|......+..+..+++|+ |+++++..-. ..+..+. +|++|++++|.+
T Consensus 108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 999984 557776665 8999999999865544445688899999 9999875421 2333322 789999999999
Q ss_pred cccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhc
Q 005085 436 EEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE 515 (715)
Q Consensus 436 ~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 515 (715)
+.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+..+|..+.
T Consensus 185 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~ 261 (332)
T 2ft3_A 185 TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLP 261 (332)
T ss_dssp SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGG
T ss_pred CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhh
Confidence 99998765 79999999999988887788999999999999999887777778999999999999999 7789999999
Q ss_pred CCCCCCEEEecCCCCCCC-------------CCCcCeEEecCccCCCC-CCCCCCCCCCC-ceEEecCCC
Q 005085 516 NLEGLKQLKLTGCTKLGS-------------LPETKNWMHPYCKHYPI-TRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 516 ~l~~L~~L~Ls~n~~~~~-------------lp~L~~L~l~~n~L~~~-~lp~~l~~l~~-~~L~l~~c~ 570 (715)
.+++|++|++++|++... .++|+.|++++|++... ..|..+..++. +.+++++|.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999988654 35689999999997631 24555666776 888888774
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.6e-24 Score=245.71 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=211.8
Q ss_pred EEecCCCCcccccChhhhcCCCCccEEEEeecCccccccCC-ccccccccccEEEecCCCcccc-cccCCCCCCccEEee
Q 005085 262 IFLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMS-SKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDL 339 (715)
Q Consensus 262 ~~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~-~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L 339 (715)
..+|++++....++.... ++|+.|+++.|. +..++ ..+...++|++|++++|.++.+ |..+..+++|++|+|
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 467888877766654332 799999999443 22333 4566778999999999999987 567999999999999
Q ss_pred cCCCCCcccCCCCCCCcceEEEEecCCCCc-ccCchhhcccccceEeccCcccccccCcccCCCccc--E-EEcCCCCC-
Q 005085 340 NHSTNLTRIPEPSETPNLERMNLRNCTGLA-HIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSI--K-IDCYKCVN- 414 (715)
Q Consensus 340 ~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~-L~l~~~~~- 414 (715)
++|.+ ..+|.. .+++|++|++++|.... ..|..++++++|++|++++|..... .+..+++| + |+++++..
T Consensus 108 s~N~l-~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRL-QNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCC-CEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCCcC-CccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99965 577766 89999999999986544 3458999999999999999865432 34445555 8 88888654
Q ss_pred -CCcCCCCC-----------------------------C-----------------------------------------
Q 005085 415 -LKEFPRIS-----------------------------G----------------------------------------- 423 (715)
Q Consensus 415 -l~~l~~~~-----------------------------~----------------------------------------- 423 (715)
....|..+ .
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 22222111 1
Q ss_pred --------------CCcEEeccCCCCc-ccCccc-----CCCCC--------------------------CCEEEccccc
Q 005085 424 --------------NVVELNLMCTPIE-EVPLSI-----ECLPN--------------------------LEILEMSFCY 457 (715)
Q Consensus 424 --------------~L~~L~L~~n~l~-~lp~~~-----~~l~~--------------------------L~~L~L~~n~ 457 (715)
+|++|++++|.+. .+|..+ ..++. |++|++++|.
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 3444444444444 444433 22222 3333333333
Q ss_pred ccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccc---cchhhcCCCCCCEEEecCCCCCCC-
Q 005085 458 SLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKE---LPSSIENLEGLKQLKLTGCTKLGS- 533 (715)
Q Consensus 458 ~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~~- 533 (715)
+.... ....+++|++|++++|.+.+..|..++.+++|+.|++++| .++. +|..+..+++|++|++++|.+.+.
T Consensus 343 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 343 FIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred ccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 21110 0167899999999999988889999999999999999999 6554 456789999999999999998762
Q ss_pred -------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 534 -------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 534 -------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
+++|+.|++++|.+++ .+|..+. +. +.|++++| +++.
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~--~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTG-SVFRCLP--PKVKVLDLHNN-RIMS 464 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCG-GGGSSCC--TTCSEEECCSS-CCCC
T ss_pred ChhhhcCcccCCEEECCCCCCCc-chhhhhc--CcCCEEECCCC-cCcc
Confidence 6789999999999875 4566553 33 89999988 5665
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2.8e-24 Score=255.08 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=221.5
Q ss_pred EecCCCCc-ccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccc-cccc--CCCCCCccEEe
Q 005085 263 FLDLSKIE-EINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQ-IWEG--QKKAPKLKYVD 338 (715)
Q Consensus 263 ~l~l~~~~-~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~ 338 (715)
.+|++++. ...+.+.+|.++++|++|+++.|... ...|..+....+|++|+|++|.+.. +|.. +.++++|++|+
T Consensus 52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY--FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC--EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc--ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 56666663 44567888999999999999843211 2236667777899999999999884 5554 88899999999
Q ss_pred ecCCCCCcccC--CCCCCCcceEEEEecCCCCcccCchhhcc--cc------------------------------cceE
Q 005085 339 LNHSTNLTRIP--EPSETPNLERMNLRNCTGLAHIPSYVQNF--NK------------------------------LGNM 384 (715)
Q Consensus 339 L~~n~~~~~~p--~~~~l~~L~~L~L~~n~~l~~~p~~~~~l--~~------------------------------L~~L 384 (715)
|++|.+....+ .++++++|++|+|++|......|..+..+ ++ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 99997665544 28899999999999987655555555443 33 5666
Q ss_pred eccCcccccccCcccC------------------------------------C--CcccE-EEcCCCCCCCcCCC---CC
Q 005085 385 IMAGCESLRCFPQNIH------------------------------------F--ISSIK-IDCYKCVNLKEFPR---IS 422 (715)
Q Consensus 385 ~L~~~~~~~~lp~~~~------------------------------------~--l~~L~-L~l~~~~~l~~l~~---~~ 422 (715)
++++|......|..+. . .++|+ |+++++......|. ..
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 6666533222222111 1 25788 88888754443343 34
Q ss_pred CCCcEEeccCCCCcccC-cccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 423 GNVVELNLMCTPIEEVP-LSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.+|+.|+|++|.++.++ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+..+++|+.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 57899999999999774 56899999999999999988888899999999999999999876666677999999999999
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC---CCCcCeEEecCccCCCCCCCC--CCCCCCC-ceEEecCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS---LPETKNWMHPYCKHYPITRVK--DYSSTSP-VQLIFANC 569 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~---lp~L~~L~l~~n~L~~~~lp~--~l~~l~~-~~L~l~~c 569 (715)
++| .++.++. +++|+.|++++|++... ..+++.|++++|.++. ++. .+..++. +.|++++|
T Consensus 370 s~N-~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 370 RDN-ALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN--LDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp ETC-CSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS--STTHHHHTTCTTCCEEEEESC
T ss_pred CCC-CCCcccC----CCCcchhccCCCCcccccccccccceeecccCcccc--CchhhhhhcCCccceeeCCCC
Confidence 999 6666543 88999999999998753 4578999999999887 433 2334444 66666655
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=247.20 Aligned_cols=300 Identities=13% Similarity=0.127 Sum_probs=180.7
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCccccc-ccCCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQIW-EGQKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~ 340 (715)
.+|++++.+..+.+.+|.++++|++|+++.|. +..+ +..+....+|++|++++|.++.++ ..+..+++|++|+++
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 45667776666777778888888888887332 2222 334455577888888888777665 457777888888888
Q ss_pred CCCCCcccCC--CCCCCcceEEEEecCCCCc-ccCchhhcccccceEeccCcccccccCcccC-----------------
Q 005085 341 HSTNLTRIPE--PSETPNLERMNLRNCTGLA-HIPSYVQNFNKLGNMIMAGCESLRCFPQNIH----------------- 400 (715)
Q Consensus 341 ~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~----------------- 400 (715)
+|.+ ..++. ++.+++|++|++++|.... .+|..++++++|++|++++|......|..++
T Consensus 109 ~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccc-ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7744 33332 7777788888887775444 4577777777777777777643222111111
Q ss_pred --------------------------------------------------------------------------------
Q 005085 401 -------------------------------------------------------------------------------- 400 (715)
Q Consensus 401 -------------------------------------------------------------------------------- 400 (715)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred ------------CCcccE-EEcCCCCCCCcCC---------------------------------------------CCC
Q 005085 401 ------------FISSIK-IDCYKCVNLKEFP---------------------------------------------RIS 422 (715)
Q Consensus 401 ------------~l~~L~-L~l~~~~~l~~l~---------------------------------------------~~~ 422 (715)
.+++|+ |+++++. +..+| ...
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 122222 2222211 11111 112
Q ss_pred CCCcEEeccCCCCccc---CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc-hhccCCccccc
Q 005085 423 GNVVELNLMCTPIEEV---PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP-EILEKMELLEE 498 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~ 498 (715)
.+|++|++++|.++.+ |..+..+++|++|++++|.+.+. |..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 3455566666655544 34455666677777776664433 3336777777777777776555444 35666777777
Q ss_pred ccccccccccccchhhcCCCCCCEEEecCCCCC--------CCCCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCC
Q 005085 499 INLEEASNIKELPSSIENLEGLKQLKLTGCTKL--------GSLPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANC 569 (715)
Q Consensus 499 L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~--------~~lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c 569 (715)
|++++|...+..|..+..+++|++|+|++|.+. ..+++|+.|++++|.+++ ..|..+..++. +.|++++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEeCCCC
Confidence 777777444455556666777777777777654 125667777777777665 12556666666 66777665
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-24 Score=233.64 Aligned_cols=272 Identities=13% Similarity=0.118 Sum_probs=226.9
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCccccccc-CCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~ 340 (715)
.++++++.+..+.+..|.++++|++|+++.|. ...+ |..+...++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCCC---CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 56777777777888899999999999998442 2233 34456678999999999999999987 5899999999999
Q ss_pred CCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcC
Q 005085 341 HSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEF 418 (715)
Q Consensus 341 ~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l 418 (715)
+|.+....|. +..+++|++|++++|.. ..+ .+..+++|+.|++++|. +..+ ...++|+ |+++++. +..+
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~l~~L~~L~l~~n~-l~~~----~~~~~L~~L~l~~n~-l~~~ 220 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPSLFHANVSYNL-LSTL----AIPIAVEELDASHNS-INVV 220 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCC-SBC--CGGGCTTCSEEECCSSC-CSEE----ECCSSCSEEECCSSC-CCEE
T ss_pred CCccCccChhhccCCCCCCEEECCCCcC-Ccc--ccccccccceeeccccc-cccc----CCCCcceEEECCCCe-eeec
Confidence 9977655555 89999999999999854 334 36778999999999984 3333 2356788 9998864 4444
Q ss_pred C-CCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccc
Q 005085 419 P-RISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLE 497 (715)
Q Consensus 419 ~-~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 497 (715)
| ....+|+.|++++|.++.++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+ ..+|..+..+++|+
T Consensus 221 ~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLK 298 (390)
T ss_dssp ECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCC
T ss_pred cccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCC
Confidence 4 44568999999999999874 689999999999999998888899999999999999999965 45777778899999
Q ss_pred cccccccccccccchhhcCCCCCCEEEecCCCCCCC----CCCcCeEEecCccCCC
Q 005085 498 EINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 498 ~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~L~~L~l~~n~L~~ 549 (715)
+|++++| .+..+|..+..+++|++|+|++|++... +++|+.|++++|+++.
T Consensus 299 ~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 299 VLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCC-cceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 9999999 7888999999999999999999998654 8899999999999765
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3e-24 Score=228.04 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=220.2
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..+.+ +.++++|++|+++.|. ...++ .+...++|++|++++|.+..++. +..+++|++|++++|
T Consensus 70 ~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~---i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 70 YLNLNGNQITDISP--LSNLVKLTNLYIGTNK---ITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSC---CCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTC
T ss_pred EEEccCCccccchh--hhcCCcCCEEEccCCc---ccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCC
Confidence 45666666555544 8999999999999442 23343 35666899999999999998877 889999999999999
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC--
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP-- 419 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~-- 419 (715)
.....++.+..+++|++|++++|... .++. +..+++|+.|++++|. +..++. +..+++|+ ++++++. +..++
T Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~ 217 (347)
T 4fmz_A 143 HNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITPV 217 (347)
T ss_dssp TTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGGG
T ss_pred CCcccccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCchh
Confidence 88788888999999999999998644 4433 8899999999999985 445555 77899999 9999864 44433
Q ss_pred CCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccc
Q 005085 420 RISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEI 499 (715)
Q Consensus 420 ~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 499 (715)
....+|++|++++|.++.+|. +..+++|++|++++|.+.. + +.+..+++|++|++++|.+.+ ++ .+..+++|+.|
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L 292 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSL 292 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred hcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEE
Confidence 345689999999999999887 8999999999999998655 3 468899999999999997654 44 58899999999
Q ss_pred cccccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCccCC
Q 005085 500 NLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCKHY 548 (715)
Q Consensus 500 ~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~L~ 548 (715)
++++|......|..+..+++|++|+|++|++... +++|++|++++|+++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 9999965566777899999999999999998776 789999999999876
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2.9e-24 Score=226.55 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=207.5
Q ss_pred CccEEEEeecCccccccCCccccccccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEE
Q 005085 284 NVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMN 361 (715)
Q Consensus 284 ~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 361 (715)
+++.++++.+ ....+|..+ ..++++|++++|.++.++. .+.++++|++|+|++|.+....|. +..+++|++|+
T Consensus 32 ~l~~l~~~~~---~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDL---GLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTS---CCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCC---CccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 5667766522 223344332 2578888888888887765 578888888888888866555564 88888888888
Q ss_pred EecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCC--cCC---CCCCCCcEEeccCCCC
Q 005085 362 LRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLK--EFP---RISGNVVELNLMCTPI 435 (715)
Q Consensus 362 L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~--~l~---~~~~~L~~L~L~~n~l 435 (715)
+++|. +..+|..+. ++|++|++++|......+..+..+++|+ |+++++..-. ..+ ....+|++|++++|.+
T Consensus 107 Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 88874 556776554 7888888888865544455677788888 8888765421 222 2345788999999999
Q ss_pred cccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhc
Q 005085 436 EEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE 515 (715)
Q Consensus 436 ~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 515 (715)
+.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..+|..+.
T Consensus 184 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~ 260 (330)
T 1xku_A 184 TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLA 260 (330)
T ss_dssp CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTT
T ss_pred ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhc
Confidence 99987664 89999999999988777888999999999999999877766778889999999999999 7779999999
Q ss_pred CCCCCCEEEecCCCCCCC-------------CCCcCeEEecCccCCCCC-CCCCCCCCCC-ceEEecCC
Q 005085 516 NLEGLKQLKLTGCTKLGS-------------LPETKNWMHPYCKHYPIT-RVKDYSSTSP-VQLIFANC 569 (715)
Q Consensus 516 ~l~~L~~L~Ls~n~~~~~-------------lp~L~~L~l~~n~L~~~~-lp~~l~~l~~-~~L~l~~c 569 (715)
.+++|++|+|++|++... .+.|+.|++++|++.... .|..+..+.. +.++++++
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 999999999999988654 367889999999976422 3455666666 77888765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-24 Score=246.20 Aligned_cols=273 Identities=13% Similarity=0.104 Sum_probs=228.9
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCccccccc-CCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~ 340 (715)
.++++++.+..+.+..|+++++|++|+++.|. +..+ |..+...++|++|+|++|.++.+|.. +..+++|++|+|+
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCc---CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 57778887888888899999999999999442 2233 34456678999999999999999887 5899999999999
Q ss_pred CCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcC
Q 005085 341 HSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEF 418 (715)
Q Consensus 341 ~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l 418 (715)
+|.+....|. +..+++|++|++++|.. ..++ ++.+++|+.|++++|. +..+ ....+|+ |++++|..-...
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~-l~~l----~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNL-LSTL----AIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSC-CSEE----ECCTTCSEEECCSSCCCEEE
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCc-cccc----cCCchhheeeccCCcccccc
Confidence 9977666665 89999999999999854 4443 6778999999999984 3333 3356788 999986543333
Q ss_pred CCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccc
Q 005085 419 PRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEE 498 (715)
Q Consensus 419 ~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 498 (715)
+....+|+.|+|++|.++.. ..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+. .+|..+..+++|+.
T Consensus 228 ~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 228 GPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305 (597)
T ss_dssp CSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCE
T ss_pred cccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcE
Confidence 34557899999999999985 56899999999999999999999999999999999999999654 47777888999999
Q ss_pred ccccccccccccchhhcCCCCCCEEEecCCCCCCC----CCCcCeEEecCccCCC
Q 005085 499 INLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 499 L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~L~~L~l~~n~L~~ 549 (715)
|+|++| .+..+|..+..+++|+.|+|++|.+... +++|+.|++++|++..
T Consensus 306 L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 306 LDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred EECCCC-CCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCC
Confidence 999999 7778999999999999999999998654 8899999999999764
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.8e-25 Score=233.81 Aligned_cols=229 Identities=15% Similarity=0.154 Sum_probs=150.0
Q ss_pred CccccccccccEEEecC-CCcc-cccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcc
Q 005085 302 SSKVHLQQESYRTQLSF-KKVE-QIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNF 378 (715)
Q Consensus 302 ~~~l~~~~~L~~L~L~~-~~l~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l 378 (715)
|..+...++|++|++++ |.+. .+|..+.++++|++|+|++|.+.+.+|. +..+++|++|++++|...+.+|..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 33333344444444442 4443 3444455555555555555544334443 4455555555555544333444455555
Q ss_pred cccceEeccCcccccccCcccCCCc-ccE-EEcCCCCCCCcCCCCCC--CCcEEeccCCCCc-ccCcccCCCCCCCEEEc
Q 005085 379 NKLGNMIMAGCESLRCFPQNIHFIS-SIK-IDCYKCVNLKEFPRISG--NVVELNLMCTPIE-EVPLSIECLPNLEILEM 453 (715)
Q Consensus 379 ~~L~~L~L~~~~~~~~lp~~~~~l~-~L~-L~l~~~~~l~~l~~~~~--~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 453 (715)
++|++|++++|.....+|..+..++ +|+ |+++++.....+|..+. +|++|++++|.++ .+|..+..+++|+.|++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 5555555555543334444444444 455 55554433323332221 2678999999888 45667899999999999
Q ss_pred ccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCC
Q 005085 454 SFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG 532 (715)
Q Consensus 454 ~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~ 532 (715)
++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|+..+.+|.. ..+++|+.|++++|+...
T Consensus 229 ~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 99998777765 889999999999999998899999999999999999999666688875 889999999999998543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.7e-23 Score=230.06 Aligned_cols=279 Identities=16% Similarity=0.134 Sum_probs=212.0
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..+ + .++.+++|++|+++.|. ...+| +...++|++|++++|.++.++ +..+++|++|++++|
T Consensus 46 ~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~---l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 46 SLDCHNSSITDM-T-GIEKLTGLTKLICTSNN---ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp EEECCSSCCCCC-T-TGGGCTTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred EEEccCCCcccC-h-hhcccCCCCEEEccCCc---CCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 466666665555 2 68889999999998442 22233 455678999999999998875 888999999999998
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC-C
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP-R 420 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~-~ 420 (715)
.+. .+| ++.+++|++|++++|.... ++ ++.+++|++|++++|..+..+ .+..+++|+ |++++| .++.+| .
T Consensus 117 ~l~-~l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~l~ 188 (457)
T 3bz5_A 117 KLT-KLD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELDVS 188 (457)
T ss_dssp CCS-CCC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCCCT
T ss_pred cCC-eec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceeccc
Confidence 554 455 8889999999999985443 43 788899999999998766666 367788899 998886 455555 2
Q ss_pred CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCc------
Q 005085 421 ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKME------ 494 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~------ 494 (715)
...+|+.|++++|.++.++ ++.+++|++|++++|.+.+ +| +..+++|+.|++++|.+.+..+..+.++.
T Consensus 189 ~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred cCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 3457889999999888874 7888999999999988666 55 78889999999999877665444455444
Q ss_pred -ccccccccccccccccchhhcCCCCCCEEEecCCCCCCC---------------CCCcCeEEecCccCCCCCCCCCCCC
Q 005085 495 -LLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS---------------LPETKNWMHPYCKHYPITRVKDYSS 558 (715)
Q Consensus 495 -~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~---------------lp~L~~L~l~~n~L~~~~lp~~l~~ 558 (715)
+|+.|++++|...+.+| ++.+++|+.|++++|..++. .|+|+.|++++|.+++ +| +..
T Consensus 264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~--l~--l~~ 337 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE--LD--VSH 337 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC--CC--CTT
T ss_pred CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc--cc--ccc
Confidence 56777777776677776 46788899999988875432 5688999999999887 64 777
Q ss_pred CCC-ceEEecCC
Q 005085 559 TSP-VQLIFANC 569 (715)
Q Consensus 559 l~~-~~L~l~~c 569 (715)
++. +.|+++++
T Consensus 338 l~~L~~L~l~~N 349 (457)
T 3bz5_A 338 NTKLKSLSCVNA 349 (457)
T ss_dssp CTTCSEEECCSS
T ss_pred CCcCcEEECCCC
Confidence 777 88988875
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=4.9e-24 Score=241.11 Aligned_cols=296 Identities=15% Similarity=0.106 Sum_probs=207.3
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCc-cccccccccEEEecCCCccc--ccccCCCCCCccEEee
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSS-KVHLQQESYRTQLSFKKVEQ--IWEGQKKAPKLKYVDL 339 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~-~l~~~~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L 339 (715)
.++++++.+..+.+.+|.++++|++|+++.| ....++. .+...++|++|++++|.++. .|..+.++++|++|++
T Consensus 54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDN---HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTS---CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred EEECCCCCcCccChhhccccccCCEEECCCC---ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 5666777666777778888888888888733 2222332 25556788888888888874 4566788888888888
Q ss_pred cCCCCCcccC--CCCCCCcceEEEEecCCCCcccCchhhc------------------------ccccceEeccCccccc
Q 005085 340 NHSTNLTRIP--EPSETPNLERMNLRNCTGLAHIPSYVQN------------------------FNKLGNMIMAGCESLR 393 (715)
Q Consensus 340 ~~n~~~~~~p--~~~~l~~L~~L~L~~n~~l~~~p~~~~~------------------------l~~L~~L~L~~~~~~~ 393 (715)
++|...+.+| .+..+++|++|++++|...+..|..++. +++|++|++++|....
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 8886566665 3778888888888887665555555443 4566666666654322
Q ss_pred cc--Ccc-----------------------------------------------------------cCC-----------
Q 005085 394 CF--PQN-----------------------------------------------------------IHF----------- 401 (715)
Q Consensus 394 ~l--p~~-----------------------------------------------------------~~~----------- 401 (715)
.. |.. +..
T Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 10 000 001
Q ss_pred ------------------CcccE-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCcc-cC---cccCCCCCCCEEEcc
Q 005085 402 ------------------ISSIK-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIEE-VP---LSIECLPNLEILEMS 454 (715)
Q Consensus 402 ------------------l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~~-lp---~~~~~l~~L~~L~L~ 454 (715)
..+|+ ++++++ .++.+|. ...+|++|++++|.+.. +| ..++.+++|++|+++
T Consensus 291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp CBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred cccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 12344 555553 3556664 35789999999999985 33 347889999999999
Q ss_pred ccccccccc--ccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCC
Q 005085 455 FCYSLKRLS--TSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG 532 (715)
Q Consensus 455 ~n~~~~~lp--~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~ 532 (715)
+|.+.+..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .+..+|..+ .++|++|+|++|.+.+
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~--~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSNNNLDS 445 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCSCCCTTS--CTTCSEEECCSSCCSC
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC-Ccccccchh--cCCceEEECCCCChhh
Confidence 998665432 45889999999999999654 78888889999999999999 677777654 3678888888887765
Q ss_pred C---CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCC
Q 005085 533 S---LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANC 569 (715)
Q Consensus 533 ~---lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c 569 (715)
. +|+|++|++++|.++. +|.. ..++. +.|++++|
T Consensus 446 ~~~~l~~L~~L~Ls~N~l~~--ip~~-~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 446 FSLFLPRLQELYISRNKLKT--LPDA-SLFPVLLVMKISRN 483 (549)
T ss_dssp CCCCCTTCCEEECCSSCCSS--CCCG-GGCTTCCEEECCSS
T ss_pred hcccCChhcEEECCCCccCc--CCCc-ccCccCCEEecCCC
Confidence 3 6778888888888876 7763 44555 77888776
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.2e-23 Score=232.62 Aligned_cols=284 Identities=15% Similarity=0.178 Sum_probs=163.0
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHST 343 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~ 343 (715)
+|++++.+..+.+ +.++++|++|+++.+ ....++. +....+|++|++++|.++.++. +..+++|++|++++|.
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n---~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNN---QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT 145 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSS---CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE
T ss_pred EECCCCccCCchh--hhccccCCEEECCCC---ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc
Confidence 3444443333332 555555555555522 1112222 3334555555555555555543 5555555555555553
Q ss_pred CCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC-CC
Q 005085 344 NLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP-RI 421 (715)
Q Consensus 344 ~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~-~~ 421 (715)
+ ..++.+..+++|++|+++++ ...+ ..+.++++|+.|++++|. +..++. +..+++|+ |++++|......| ..
T Consensus 146 l-~~~~~~~~l~~L~~L~l~~~--~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 146 I-SDISALSGLTSLQQLSFGNQ--VTDL-KPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp E-CCCGGGTTCTTCSEEEEEES--CCCC-GGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred c-CCChhhccCCcccEeecCCc--ccCc-hhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCcccccccccc
Confidence 2 23344555555555555432 1122 226666777777777764 333332 55667777 7776654322222 23
Q ss_pred CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 422 SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
..+|++|++++|.++.++ .+..+++|++|++++|.+.+..| +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 220 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred cCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEc
Confidence 456677777777777664 36667777777777776554443 6677777777777775544333 666777777777
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
++| .+..++. +..+++|+.|+|++|.+.+. +++|+.|++++|.+++ +| .+..++. +.|++++|.
T Consensus 295 ~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 295 NEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSC
T ss_pred CCC-cccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCC--ch-hhccCCCCCEEeCCCCc
Confidence 777 5555544 66777777777777776554 5677777777777766 43 4555555 777777663
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.4e-23 Score=241.77 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=93.7
Q ss_pred CCcEEeccCCCCcccC-cccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCC-----ccch----hccCC
Q 005085 424 NVVELNLMCTPIEEVP-LSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLE-----SFPE----ILEKM 493 (715)
Q Consensus 424 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~-----~~p~----~~~~l 493 (715)
+|++|++++|.++.++ ..++.+++|++|++++|.+.+..|..+.++++|++|++++|...+ .+|. .+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 3777888887777654 447778888888888887777777777777777777777654332 2332 56677
Q ss_pred cccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-----------CCCcCeEEecCccCCCCCCCCCCCCCCC-
Q 005085 494 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----------LPETKNWMHPYCKHYPITRVKDYSSTSP- 561 (715)
Q Consensus 494 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----------lp~L~~L~l~~n~L~~~~lp~~l~~l~~- 561 (715)
++|++|++++|...+..|..+..+++|++|++++|.+... .++|+.|++++|.++. ..|..+..++.
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L 407 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHL 407 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE-ECTTTTTTCTTC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe-EChhhhhCCCCC
Confidence 7888888888744444455677788888888877753221 1356666666666554 12444555555
Q ss_pred ceEEecCC
Q 005085 562 VQLIFANC 569 (715)
Q Consensus 562 ~~L~l~~c 569 (715)
+.|++++|
T Consensus 408 ~~L~L~~N 415 (680)
T 1ziw_A 408 EVLDLGLN 415 (680)
T ss_dssp CEEECCSS
T ss_pred CEEeCCCC
Confidence 55665554
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.3e-23 Score=228.29 Aligned_cols=284 Identities=15% Similarity=0.197 Sum_probs=227.9
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..+.+ ++++++|++|+++.+. ...++. +...++|++|++++|.+..++ .+..+++|++|+++++
T Consensus 94 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~---l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 94 DILMNNNQIADITP--LANLTNLTGLTLFNNQ---ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ 166 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSC---CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES
T ss_pred EEECCCCccccChh--hcCCCCCCEEECCCCC---CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc
Confidence 34556665555544 8999999999998442 233333 556689999999999999876 4889999999999743
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCC-
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR- 420 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~- 420 (715)
...++.+..+++|++|++++|.. ..+ ..+..+++|++|++++|......| ++.+++|+ |++++|. ++.++.
T Consensus 167 --~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~l 239 (466)
T 1o6v_A 167 --VTDLKPLANLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIGTL 239 (466)
T ss_dssp --CCCCGGGTTCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCGGG
T ss_pred --ccCchhhccCCCCCEEECcCCcC-CCC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccchhh
Confidence 34455689999999999999864 444 458899999999999986544433 67799999 9999864 454443
Q ss_pred -CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccc
Q 005085 421 -ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEI 499 (715)
Q Consensus 421 -~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 499 (715)
...+|++|++++|.+..++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ++.+++|+.|
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 35689999999999998876 8999999999999998766444 8899999999999997665444 7899999999
Q ss_pred cccccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 500 NLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 500 ~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
++++| .+..++. +..+++|+.|++++|++.+. +++|+.|++++|.+++ +++ +..++. +.|++++|+
T Consensus 315 ~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 315 TLYFN-NISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp ECCSS-CCSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CGG-GTTCTTCCEEECCCEE
T ss_pred ECcCC-cCCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCc--cch-hhcCCCCCEEeccCCc
Confidence 99999 5555554 78999999999999988764 8899999999999987 554 777777 899999884
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.7e-23 Score=241.24 Aligned_cols=306 Identities=16% Similarity=0.104 Sum_probs=218.4
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccc-cCCCCCCccEEeecC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNH 341 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~ 341 (715)
.++++.+.+..+.+..|.++++|++|+++.|. +. ...|..+...++|++|++++|.++.+|. .+.++++|++|+|++
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-IS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 56777777777788888999999999988432 11 2234455666889999999998888886 488899999999998
Q ss_pred CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccC--CCcccE-EEcCCCCCCCc
Q 005085 342 STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIH--FISSIK-IDCYKCVNLKE 417 (715)
Q Consensus 342 n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~--~l~~L~-L~l~~~~~l~~ 417 (715)
|.+....|. ++++++|++|++++|......|..++++++|++|++++|......|..+. .+++|+ |++++|..-..
T Consensus 107 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 866444443 88889999999998876666677788888999999988854443333332 457788 88888643222
Q ss_pred CCCC------------------------------CCCCcEEeccCCCCccc-CcccCCCC--CCCEEEcccccccccccc
Q 005085 418 FPRI------------------------------SGNVVELNLMCTPIEEV-PLSIECLP--NLEILEMSFCYSLKRLST 464 (715)
Q Consensus 418 l~~~------------------------------~~~L~~L~L~~n~l~~l-p~~~~~l~--~L~~L~L~~n~~~~~lp~ 464 (715)
.|.. ..+|+.|++++|.+..+ |..+..++ +|++|++++|.+.+..|.
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 266 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence 2221 14677888888887755 44566664 489999998887777777
Q ss_pred cccCCCCccEeecCCCcCCCccchhccCCccccccccccccccc-----ccch----hhcCCCCCCEEEecCCCCCCC--
Q 005085 465 SICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-----ELPS----SIENLEGLKQLKLTGCTKLGS-- 533 (715)
Q Consensus 465 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----~lp~----~l~~l~~L~~L~Ls~n~~~~~-- 533 (715)
.++.+++|++|++++|.+.+..|..+..+++|+.|++++|.... .+|. .+..+++|++|++++|.+.+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 88888899999999888777778888888899999888763221 3443 577888899999998877653
Q ss_pred -----CCCcCeEEecCccCCCCCCCCC-CCCC--CC-ceEEecCCC
Q 005085 534 -----LPETKNWMHPYCKHYPITRVKD-YSST--SP-VQLIFANCL 570 (715)
Q Consensus 534 -----lp~L~~L~l~~n~L~~~~lp~~-l~~l--~~-~~L~l~~c~ 570 (715)
+++|++|++++|.++...+|.. +..+ +. +.|++++|.
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 6788999998887443224432 1111 12 677777663
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.2e-22 Score=223.44 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=214.2
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..++ ++.+++|++|+++.|. + ..++ +....+|++|++++|.++.+| +..+++|++|++++|
T Consensus 68 ~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~-l--~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 68 KLICTSNNITTLD---LSQNTNLTYLACDSNK-L--TNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCSEEECCSSC-C--SCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS
T ss_pred EEEccCCcCCeEc---cccCCCCCEEECcCCC-C--ceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC
Confidence 4566666655552 8899999999999543 2 2233 455689999999999999886 889999999999999
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCC-C
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFP-R 420 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~-~ 420 (715)
.+.. + +++.+++|++|++++|...+.+ .++.+++|+.|++++|. +..+| +..+++|+ |++++|. ++.++ .
T Consensus 138 ~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~-l~~~~l~ 209 (457)
T 3bz5_A 138 TLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNN-ITKLDLN 209 (457)
T ss_dssp CCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSC-CSCCCCT
T ss_pred ccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCc-CCeeccc
Confidence 6544 4 4889999999999999777766 47889999999999984 55566 78899999 9999865 44443 3
Q ss_pred CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCC-------CccEeecCCCcCCCccchhccCC
Q 005085 421 ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLK-------YLSSLDLSYCINLESFPEILEKM 493 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~-------~L~~L~L~~n~~~~~~p~~~~~l 493 (715)
...+|++|++++|.++.+| ++.+++|++|++++|.+.+..+..+.+++ +|+.|++++|...+.+| .+.+
T Consensus 210 ~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTC
T ss_pred cCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--cccc
Confidence 4568899999999999998 88999999999999998776555555444 56777888887777777 5788
Q ss_pred cccccccccccccccccchh--------hcCCCCCCEEEecCCCCCCC----CCCcCeEEecCccCCC
Q 005085 494 ELLEEINLEEASNIKELPSS--------IENLEGLKQLKLTGCTKLGS----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 494 ~~L~~L~L~~n~~~~~lp~~--------l~~l~~L~~L~Ls~n~~~~~----lp~L~~L~l~~n~L~~ 549 (715)
++|+.|++++|..++.+|.. +..+++|++|++++|.+.+. +++|+.|++++|.+++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCCC
Confidence 99999999999877777643 45678999999999988764 7899999999999987
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.1e-22 Score=214.42 Aligned_cols=271 Identities=15% Similarity=0.111 Sum_probs=209.4
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCc-cccccccccEEEecCCCcccc-cccCCCCCCccEEeecC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSS-KVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNH 341 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~-~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 341 (715)
+++++.....+.. .+ .+++++|+++.|. +..++. .+....+|++|++++|.++.+ |..+..+++|++|+|++
T Consensus 36 l~~~~~~l~~lp~-~~--~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 36 VQCSDLGLEKVPK-DL--PPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EECTTSCCCSCCC-SC--CTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEecCCCccccCc-cC--CCCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4455444443332 22 2688999998442 223332 455668999999999999977 77899999999999999
Q ss_pred CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCccccc--ccCcccCCCcccE-EEcCCCCCCCc
Q 005085 342 STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLR--CFPQNIHFISSIK-IDCYKCVNLKE 417 (715)
Q Consensus 342 n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~-L~l~~~~~l~~ 417 (715)
|.+ ..+|. +. ++|++|++++|......+..+.++++|+.|++++|.... ..+..+..+++|+ |+++++. ++.
T Consensus 110 n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~ 185 (330)
T 1xku_A 110 NQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT 185 (330)
T ss_dssp SCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS
T ss_pred CcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-ccc
Confidence 954 46664 33 799999999986555444678999999999999986543 5667788899999 9999864 555
Q ss_pred CCC-CCCCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcc
Q 005085 418 FPR-ISGNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMEL 495 (715)
Q Consensus 418 l~~-~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 495 (715)
+|. ...+|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++
T Consensus 186 l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 664 346899999999999977 567999999999999999988777778999999999999999654 88888999999
Q ss_pred cccccccccccccccchh-hc------CCCCCCEEEecCCCCCC---------CCCCcCeEEecCcc
Q 005085 496 LEEINLEEASNIKELPSS-IE------NLEGLKQLKLTGCTKLG---------SLPETKNWMHPYCK 546 (715)
Q Consensus 496 L~~L~L~~n~~~~~lp~~-l~------~l~~L~~L~Ls~n~~~~---------~lp~L~~L~l~~n~ 546 (715)
|++|++++| .++.+|.. +. ..+.|+.|++++|++.. .+++|+.+++++|+
T Consensus 265 L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 265 IQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999 67666653 22 34789999999999753 16789999999884
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=2.4e-22 Score=231.06 Aligned_cols=305 Identities=13% Similarity=0.141 Sum_probs=210.4
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCC-ccccccccccEEEecCCCccccccc-CCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMS-SKVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~-~~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~ 340 (715)
.+|++.+.+..+.+.+|.++++|++|+++.| .+..++ ..+..+++|++|+|++|+++.+|.+ +.++++|++|+|+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N---~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCC---cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 6888999888899999999999999999844 233443 3456678999999999999998865 7999999999999
Q ss_pred CCCCCcccCC-CCCCCcceEEEEecCCCCc-ccCchhhcccccceEeccCcccccccCcccCC-----------------
Q 005085 341 HSTNLTRIPE-PSETPNLERMNLRNCTGLA-HIPSYVQNFNKLGNMIMAGCESLRCFPQNIHF----------------- 401 (715)
Q Consensus 341 ~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~----------------- 401 (715)
+|.+....+. ++.+++|++|++++|.... ..|..++.+++|++|++++|......|..+..
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 9965443333 8999999999999986543 46788899999999999988533222211100
Q ss_pred -----------------------------------CcccE----------------------------------------
Q 005085 402 -----------------------------------ISSIK---------------------------------------- 406 (715)
Q Consensus 402 -----------------------------------l~~L~---------------------------------------- 406 (715)
+..++
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 11111
Q ss_pred ----------------------------------------EEcCCCCCCCcCC-----------------------CCCC
Q 005085 407 ----------------------------------------IDCYKCVNLKEFP-----------------------RISG 423 (715)
Q Consensus 407 ----------------------------------------L~l~~~~~l~~l~-----------------------~~~~ 423 (715)
|++.++.. ..++ ....
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEE-SSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccc-cCcCcccchhhhhcccccccCCCCccccccc
Confidence 11111000 0000 0122
Q ss_pred CCcEEeccCCCCcc--------------------------cCcc-------------------------cCCCCCCCEEE
Q 005085 424 NVVELNLMCTPIEE--------------------------VPLS-------------------------IECLPNLEILE 452 (715)
Q Consensus 424 ~L~~L~L~~n~l~~--------------------------lp~~-------------------------~~~l~~L~~L~ 452 (715)
+|+.|+++.|.+.. ++.. +..+++|+.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 34555555554421 1111 23445555566
Q ss_pred cccccccccccccccCCCCccEeecCCCcCCC-ccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCC
Q 005085 453 MSFCYSLKRLSTSICKLKYLSSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 453 L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 531 (715)
++.|.+.+..|..+..+++|+.|++++|.... ..|..+..+++|++|+|++|...+..|..+.++++|++|+|++|++.
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 66666555666667778888888888886554 45677888999999999999444444667888999999999999876
Q ss_pred CC-------CCCcCeEEecCccCCCCCCCCCCCCCC-C-ceEEecCCCCC
Q 005085 532 GS-------LPETKNWMHPYCKHYPITRVKDYSSTS-P-VQLIFANCLKL 572 (715)
Q Consensus 532 ~~-------lp~L~~L~l~~n~L~~~~lp~~l~~l~-~-~~L~l~~c~~l 572 (715)
+. +++|+.|++++|.|+. ..|..+..+. . +.|++++++--
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCB-CCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCChhHHhCCCCCCEEECCCCcCCC-CCHHHHHhhhCcCCEEEeeCCCCc
Confidence 54 6789999999999887 2456677763 3 88998876543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2e-22 Score=212.67 Aligned_cols=270 Identities=14% Similarity=0.125 Sum_probs=209.3
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCcccc-cccCCCCCCccEEeecC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNH 341 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 341 (715)
++++++....++.. + .++|++|+++.|. +..+ +..+....+|++|++++|.++.+ |..+..+++|++|+|++
T Consensus 38 l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 38 VQCSDLGLKAVPKE-I--SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EECCSSCCSSCCSC-C--CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred EECCCCCccccCCC-C--CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 45555544444332 2 3689999998442 2223 34556668999999999999977 67899999999999999
Q ss_pred CCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCccccc--ccCcccCCCcccE-EEcCCCCCCCc
Q 005085 342 STNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLR--CFPQNIHFISSIK-IDCYKCVNLKE 417 (715)
Q Consensus 342 n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~-L~l~~~~~l~~ 417 (715)
|.+ ..+|. +. ++|++|++++|......+..+.++++|+.|++++|.... ..|..+..+ +|+ |+++++. ++.
T Consensus 112 n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~ 186 (332)
T 2ft3_A 112 NHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTG 186 (332)
T ss_dssp SCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS
T ss_pred CcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCc
Confidence 965 46665 43 899999999986554444568999999999999986532 566677777 888 9998864 555
Q ss_pred CCC-CCCCCcEEeccCCCCcccC-cccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcc
Q 005085 418 FPR-ISGNVVELNLMCTPIEEVP-LSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMEL 495 (715)
Q Consensus 418 l~~-~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 495 (715)
+|. ...+|++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 664 3468999999999999887 56899999999999999988877778999999999999999654 88888999999
Q ss_pred cccccccccccccccch-hhcC------CCCCCEEEecCCCCCC---------CCCCcCeEEecCcc
Q 005085 496 LEEINLEEASNIKELPS-SIEN------LEGLKQLKLTGCTKLG---------SLPETKNWMHPYCK 546 (715)
Q Consensus 496 L~~L~L~~n~~~~~lp~-~l~~------l~~L~~L~Ls~n~~~~---------~lp~L~~L~l~~n~ 546 (715)
|+.|++++| .++.++. .+.. .++|+.|++++|++.. .+++|+.|++++|+
T Consensus 266 L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999 6666654 3322 4789999999999762 27789999999874
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=231.09 Aligned_cols=304 Identities=15% Similarity=0.119 Sum_probs=219.0
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccC-CccccccccccEEEecCCCcccccc-cCCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKM-SSKVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~ 340 (715)
.+|++++.+..+.+..|+++++|++|+++.|. ...+ |..+....+|++|++++|.++.++. .+.++++|++|+++
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCc---CCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 45666666666777778888888888887332 2222 2344555677777777777776664 46777777777777
Q ss_pred CCCCCc-ccCC-CCCCCcceEEEEecCCCCcccCc---------------------------------------------
Q 005085 341 HSTNLT-RIPE-PSETPNLERMNLRNCTGLAHIPS--------------------------------------------- 373 (715)
Q Consensus 341 ~n~~~~-~~p~-~~~l~~L~~L~L~~n~~l~~~p~--------------------------------------------- 373 (715)
+|.+.. .+|. ++++++|++|++++|......|.
T Consensus 133 ~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred CCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccc
Confidence 775543 3454 66777777777776643221111
Q ss_pred ----------------------------------------------------------------hhhcccccceEeccCc
Q 005085 374 ----------------------------------------------------------------YVQNFNKLGNMIMAGC 389 (715)
Q Consensus 374 ----------------------------------------------------------------~~~~l~~L~~L~L~~~ 389 (715)
.+..+++|+.|++++|
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 2233455566666555
Q ss_pred ccccccCcccC------------------------------------------CCcccE-EEcCCCCCCCcC---C---C
Q 005085 390 ESLRCFPQNIH------------------------------------------FISSIK-IDCYKCVNLKEF---P---R 420 (715)
Q Consensus 390 ~~~~~lp~~~~------------------------------------------~l~~L~-L~l~~~~~l~~l---~---~ 420 (715)
. +..+|..+. .+++|+ |++++|. +... | .
T Consensus 293 ~-l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 370 (570)
T 2z63_A 293 T-IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDF 370 (570)
T ss_dssp E-ECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHH
T ss_pred c-chhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc-cCcccccccccc
Confidence 3 223443332 344555 5555543 2222 2 2
Q ss_pred CCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccccccc-ccccCCCCccEeecCCCcCCCccchhccCCcccccc
Q 005085 421 ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLS-TSICKLKYLSSLDLSYCINLESFPEILEKMELLEEI 499 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 499 (715)
...+|++|++++|.+..+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|...+..|..+..+++|++|
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 3468899999999999998889999999999999999777665 468899999999999999888889999999999999
Q ss_pred cccccccc-cccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCCCCCC-CCCCCCCC-ceEEecCC
Q 005085 500 NLEEASNI-KELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYPITRV-KDYSSTSP-VQLIFANC 569 (715)
Q Consensus 500 ~L~~n~~~-~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~~~lp-~~l~~l~~-~~L~l~~c 569 (715)
++++|... +.+|..+..+++|++|+|++|.+.+. +++|++|++++|.+++ +| ..+..++. +.|++++|
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSS
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC--CCHHHhhcccCCcEEEecCC
Confidence 99999544 46899999999999999999987653 6789999999999988 55 45778888 99999987
Q ss_pred CCCC
Q 005085 570 LKLN 573 (715)
Q Consensus 570 ~~l~ 573 (715)
+--.
T Consensus 529 ~~~~ 532 (570)
T 2z63_A 529 PWDC 532 (570)
T ss_dssp CBCC
T ss_pred cccC
Confidence 6443
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.3e-21 Score=212.85 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=173.1
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++....+.. -.++|+.|+++.|. ...+|.. ..+|++|++++|.++.+|.. .++|++|++++|
T Consensus 75 ~L~l~~~~l~~lp~----~~~~L~~L~l~~n~---l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 75 ELELNNLGLSSLPE----LPPHLESLVASCNS---LTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp EEECTTSCCSCCCS----CCTTCSEEECCSSC---CSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred EEEecCCccccCCC----CcCCCCEEEccCCc---CCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCC
Confidence 34555554443332 13678888887332 2234433 26788888888888776542 268888888888
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCC
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI 421 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~ 421 (715)
.+. .+|.++.+++|++|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|+ |++++| .++.+|..
T Consensus 142 ~l~-~lp~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~ 213 (454)
T 1jl5_A 142 QLE-KLPELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDL 213 (454)
T ss_dssp CCS-SCCCCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCC
T ss_pred CCC-CCcccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCC
Confidence 554 47788888888888888874 44466543 488888888874 44467 478888888 888885 45567777
Q ss_pred CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 422 SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
..+|++|++++|.++.+|. ++.+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|.. +++|+.|++
T Consensus 214 ~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDV 284 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEEC
Confidence 7788888888888888884 7888888888888887553 444 24678888888876543 5542 356777777
Q ss_pred cccccccccchh---h-------------cCC-CCCCEEEecCCCCCCC---CCCcCeEEecCccCCCCCCCCCCCCCCC
Q 005085 502 EEASNIKELPSS---I-------------ENL-EGLKQLKLTGCTKLGS---LPETKNWMHPYCKHYPITRVKDYSSTSP 561 (715)
Q Consensus 502 ~~n~~~~~lp~~---l-------------~~l-~~L~~L~Ls~n~~~~~---lp~L~~L~l~~n~L~~~~lp~~l~~l~~ 561 (715)
++| .+..+|.. + ..+ ++|++|++++|.+.+. +++|+.|++++|.++. +|.. ++.
T Consensus 285 s~N-~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~--lp~~---l~~ 358 (454)
T 1jl5_A 285 SEN-IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE--VPEL---PQN 358 (454)
T ss_dssp CSS-CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCCC---CTT
T ss_pred cCC-ccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcccc--ccch---hhh
Confidence 776 44443321 0 011 3455555555554432 3455555555555554 5541 222
Q ss_pred -ceEEecCC
Q 005085 562 -VQLIFANC 569 (715)
Q Consensus 562 -~~L~l~~c 569 (715)
+.|++++|
T Consensus 359 L~~L~L~~N 367 (454)
T 1jl5_A 359 LKQLHVEYN 367 (454)
T ss_dssp CCEEECCSS
T ss_pred ccEEECCCC
Confidence 55555554
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3.3e-22 Score=220.31 Aligned_cols=223 Identities=17% Similarity=0.073 Sum_probs=181.8
Q ss_pred ccccEEEecCCCcccc-cccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEec
Q 005085 309 QESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIM 386 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L 386 (715)
.++++|+|++|.++.+ |..+.++++|++|+|++|.+....+. +.++++|++|+|++|......+..+..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5788999999999876 45688999999999999966555544 889999999999998654433456888999999999
Q ss_pred cCcccccccCcccCCCcccE-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccccc
Q 005085 387 AGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKR 461 (715)
Q Consensus 387 ~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~ 461 (715)
++|......+..+.++++|+ |++++|+.++.++. ...+|++|++++|.++.+|. +..+++|++|++++|.+.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCccc
Confidence 99865444445788899999 99999888887764 34578899999999998874 88899999999999998888
Q ss_pred ccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEEecCCCCCCC
Q 005085 462 LSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 462 lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
.|..+.++++|+.|++++|.+.+..|..+..+++|+.|+|++| .+..+|. .+..+++|+.|+|++|++...
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8888999999999999999887777888889999999999999 5556554 467788888888888877655
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.5e-21 Score=221.17 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=199.8
Q ss_pred CCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEE
Q 005085 283 SNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNL 362 (715)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L 362 (715)
.+++.|+++.++ +..+|..+. ++|++|++++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~---L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESG---LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSC---CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCCC---cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence 357777777332 234554333 688889999999888887 57889999999985 456666 7789999999
Q ss_pred ecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc
Q 005085 363 RNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS 441 (715)
Q Consensus 363 ~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~ 441 (715)
++|. +..+|. .+++|+.|++++|. +..+|.. +++|+ |++++| .++.+|..+.+|+.|++++|.++.+|
T Consensus 109 s~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 109 FSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC--
T ss_pred cCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc--
Confidence 9874 555665 57889999999884 5557764 47888 888886 67778888889999999999999998
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 521 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 521 (715)
..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+. .+|. .+++|+.|++++| .++.+| ..+++|+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N-~L~~lp---~~l~~L~ 244 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGN-RLTSLP---VLPSELK 244 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCC
T ss_pred -ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCC-ccCcCC---CCCCcCc
Confidence 457899999999998654 554 3578999999998654 5664 3578999999999 777787 5678999
Q ss_pred EEEecCCCCCCC---CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCCH
Q 005085 522 QLKLTGCTKLGS---LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 522 ~L~Ls~n~~~~~---lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
.|+|++|.+... +++|+.|++++|.|+. +|..+..++. +.|++++|+ +..
T Consensus 245 ~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~~L~L~~N~-l~~ 298 (622)
T 3g06_A 245 ELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP-LSE 298 (622)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCCS--CCGGGGGSCTTCEEECCSCC-CCH
T ss_pred EEECCCCCCCcCCcccccCcEEeCCCCCCCc--CCHHHhhccccCEEEecCCC-CCC
Confidence 999999987753 6789999999999997 9999998888 999999885 444
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=3.1e-22 Score=208.61 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=129.3
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCc--ccCchhhcccccceEecc
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLA--HIPSYVQNFNKLGNMIMA 387 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~--~~p~~~~~l~~L~~L~L~ 387 (715)
+.++.+++.++.+|..+. ++|++|+|++|.+. .+|. +..+++|++|+|++|.... ..|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 356666777777776553 57777777777543 4443 6777777777777764332 224566677778888887
Q ss_pred CcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc--ccCCCCCCCEEEccccccccccccc
Q 005085 388 GCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL--SIECLPNLEILEMSFCYSLKRLSTS 465 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~~~~~lp~~ 465 (715)
+|. +..+|..+..+++|+ +|++++|.++.++. .+..+++|++|++++|.+.+..|..
T Consensus 87 ~n~-i~~l~~~~~~l~~L~--------------------~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLE--------------------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp SCS-EEEEEEEEETCTTCC--------------------EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred CCc-cccChhhcCCCCCCC--------------------EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 773 344555555555555 44444444444432 3455555555555555544444445
Q ss_pred ccCCCCccEeecCCCcCCC-ccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCc
Q 005085 466 ICKLKYLSSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPET 537 (715)
Q Consensus 466 ~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L 537 (715)
+..+++|++|++++|.+.+ .+|..+..+++|++|++++|...+..|..+..+++|++|+|++|.+... +++|
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 5555555555555554433 3444555555555555555522222244455555555555555554332 4455
Q ss_pred CeEEecCccCCCCCCCCCCCCCC-C-ceEEecCCC
Q 005085 538 KNWMHPYCKHYPITRVKDYSSTS-P-VQLIFANCL 570 (715)
Q Consensus 538 ~~L~l~~n~L~~~~lp~~l~~l~-~-~~L~l~~c~ 570 (715)
+.|++++|.+++ ..|..+..++ . +.|++++++
T Consensus 226 ~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 226 QVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCC
T ss_pred CEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCC
Confidence 555665555544 2344444443 3 566665553
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=217.27 Aligned_cols=223 Identities=18% Similarity=0.097 Sum_probs=178.3
Q ss_pred ccccEEEecCCCccccc-ccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEec
Q 005085 309 QESYRTQLSFKKVEQIW-EGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIM 386 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L 386 (715)
.++++|+|++|.++.++ ..+.++++|++|+|++|.+....+. +.++++|++|+|++|......+..+..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57888999999988776 5688899999999998865444333 888999999999988544333356888999999999
Q ss_pred cCcccccccCcccCCCcccE-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccccc
Q 005085 387 AGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKR 461 (715)
Q Consensus 387 ~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~ 461 (715)
++|......+..+..+++|+ |++++|+.+..++. ...+|++|++++|.++.+|. +..+++|++|+|++|.+.+.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCcc
Confidence 99865444445778888998 88888888777664 34577899999999998885 78889999999999988887
Q ss_pred ccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEEecCCCCCCC
Q 005085 462 LSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 462 lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
.|..+.++++|+.|++++|.+.+..+..+..+++|+.|+|++| .+..+|. .+..+++|+.|+|++|++..+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCccCC
Confidence 7888999999999999999877777778888999999999998 5555554 467788888888888887654
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2.3e-22 Score=207.24 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=154.7
Q ss_pred ccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCccc-CchhhcccccceEe
Q 005085 309 QESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHI-PSYVQNFNKLGNMI 385 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~-p~~~~~l~~L~~L~ 385 (715)
.+|++|++++|.++.++. .+..+++|++|+|++|.+....|. +..+++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455666666666555542 355556666666665544333332 555566666666655423333 44555555666666
Q ss_pred ccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccc
Q 005085 386 MAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLST 464 (715)
Q Consensus 386 L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~ 464 (715)
+++|......|..+..++ +|++|++++|.++.+|.. ++.+++|++|++++|.+.+..+.
T Consensus 112 l~~n~l~~~~~~~~~~l~--------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA--------------------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT--------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCCCcCCEECHhHhhCCc--------------------CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 655543333333344334 445888888888887765 78899999999999887665556
Q ss_pred cccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc-hhhcCCCCCCEEEecCCCCCCCCC------Cc
Q 005085 465 SICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLP------ET 537 (715)
Q Consensus 465 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~lp------~L 537 (715)
.+..+++|++|++++|.+.+..|..+..+++|+.|++++| .+..+| ..+..+++|+.|+|++|++....+ .|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 6888999999999999887777888889999999999999 555555 458889999999999998876633 24
Q ss_pred CeEEecCccCCCCCCCCCCCCCCC---ceEEecCC
Q 005085 538 KNWMHPYCKHYPITRVKDYSSTSP---VQLIFANC 569 (715)
Q Consensus 538 ~~L~l~~n~L~~~~lp~~l~~l~~---~~L~l~~c 569 (715)
+.+..+.+.+.. ..|..+....- ...++.+|
T Consensus 251 ~~~~~~~~~~~c-~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 251 QKFRGSSSEVPC-SLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHCCSEECCCBE-EESGGGTTCBGGGSCGGGSCCC
T ss_pred HhcccccCcccc-CCchHhCCcChhhcCHHHhccC
Confidence 555555555442 35555543222 34445555
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.8e-21 Score=212.29 Aligned_cols=247 Identities=16% Similarity=0.141 Sum_probs=173.6
Q ss_pred CCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEE
Q 005085 283 SNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNL 362 (715)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L 362 (715)
++|++|+++.| ....+| .+....+|++|++++|.++.+|... .+|++|++++|.+ ..+|.++.+++|++|++
T Consensus 131 ~~L~~L~L~~n---~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l-~~l~~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNN---QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL-EELPELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSS---CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-SSCCCCTTCTTCCEEEC
T ss_pred CCCCEEECcCC---CCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcC-CcCccccCCCCCCEEEC
Confidence 56777777633 222355 3555567777777777777766543 4777777777744 34667777788888888
Q ss_pred ecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc
Q 005085 363 RNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS 441 (715)
Q Consensus 363 ~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~ 441 (715)
++|.. ..+|... ++|++|++++|. +..+|. ++.+++|+ |++++| .++.+|..+.+|++|++++|.++.+|..
T Consensus 203 ~~N~l-~~l~~~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 203 DNNSL-KKLPDLP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CSSCC-SSCCCCC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCcC-CcCCCCc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCcc
Confidence 77743 3354332 477888888874 446774 77888888 888875 5666777778888888888888888764
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 521 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 521 (715)
+++|++|++++|.+.+ +|. -.++|+.|++++|.+.+ ++. -.++|+.|++++| .+..+|.. +++|+
T Consensus 276 ---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N-~l~~lp~~---~~~L~ 340 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNN-KLIELPAL---PPRLE 340 (454)
T ss_dssp ---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred ---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCC-cccccccc---CCcCC
Confidence 4788888888887554 332 12678888888886543 332 1258999999998 66667764 68999
Q ss_pred EEEecCCCCCCC---CCCcCeEEecCccCCC-CCCCCCCCCC
Q 005085 522 QLKLTGCTKLGS---LPETKNWMHPYCKHYP-ITRVKDYSST 559 (715)
Q Consensus 522 ~L~Ls~n~~~~~---lp~L~~L~l~~n~L~~-~~lp~~l~~l 559 (715)
+|++++|.+... +++|++|++++|.+++ +.+|.++..+
T Consensus 341 ~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 341 RLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred EEECCCCccccccchhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 999999987653 5689999999999776 2467777655
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=2.3e-22 Score=249.39 Aligned_cols=222 Identities=20% Similarity=0.303 Sum_probs=165.1
Q ss_pred CCCCcHHHHH-HHHHH---hhccCCceE-EEEecchhhhcCCcHHHHHHHHHHHHhCCCCC---CCC-C-cchHHHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQ---FSQKFEGKY-FMANVREESEKCGVLVHLRNQVLSKVLGENFD---IGT-Q-KIPQYIRDRL 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~---~~~~F~~~~-wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~---~~~-~-~~~~~l~~~L 70 (715)
|||||||||| ++|++ ++.+|...+ ||. +++... .+ +....+.++..+...... ... . .+...++..|
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 231 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDK-SG-LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM 231 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCH-HH-HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCc-hH-HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH
Confidence 8999999999 99986 456676655 776 665432 12 444556677776654321 111 1 5566777777
Q ss_pred cCC--eEEEEEeCcc------------------CChHHHHH-hCcCcEEEcCC-CCHHHHHHHHHhhhcCCCCCChhHHH
Q 005085 71 QRM--KVFIVLDDVN------------------KDKTILER-YGTQRIYEVEG-LNCNEVLRLFSSCAFKENHCPEDLLK 128 (715)
Q Consensus 71 ~~k--r~LlVLDDv~------------------r~~~v~~~-~~~~~~~~l~~-L~~~es~~LF~~~af~~~~~~~~~~~ 128 (715)
.+| |||||||||| |++.++.. ++....+.+++ |+++||++||...++.. .+++++
T Consensus 232 ~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~ 308 (1249)
T 3sfz_A 232 LRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPA 308 (1249)
T ss_dssp SSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCT
T ss_pred hccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcH
Confidence 766 9999999999 88888854 46678899996 99999999999998543 234456
Q ss_pred HHHHHHHHhCCCcchhHHhhhcccCCChhHHHHHHHHhhccCCCCCcC--------------------------------
Q 005085 129 HSETAVHYAKGNPLALQVLGSSFYGKSKPDWVNALNNLKRISGSDIYD-------------------------------- 176 (715)
Q Consensus 129 ~~~~i~~~c~glPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~~~i~~-------------------------------- 176 (715)
++++|+++|+|+||||+++|++|+.+. .+|+..++.+.......+..
T Consensus 309 ~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~ 387 (1249)
T 3sfz_A 309 EAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS 387 (1249)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 799999999999999999999998876 57999998887655433321
Q ss_pred --------CHHHHHHHHhhCCCCHHHhHHHHhcccceEEe-CC---eEeecHHHHHHHHHHHhhh
Q 005085 177 --------DREHVMWILSDDYCSVQYAMNVLVNKSLIKIS-YN---KLQMHDLLQEMGREIVCQE 229 (715)
Q Consensus 177 --------~~~~l~~il~~~~~~~~~~l~~L~~~~ll~~~-~~---~~~mhdli~~l~~~i~~~~ 229 (715)
..+.+..+|.++...+..++++|+++||++.. ++ .|+||+++|++++....++
T Consensus 388 ~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 388 ILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 23344555555545567789999999999987 33 4999999999999887665
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=211.95 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=182.3
Q ss_pred ccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCch-hhcccccceEe
Q 005085 309 QESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSY-VQNFNKLGNMI 385 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~-~~~l~~L~~L~ 385 (715)
.+|++|++++|.++.+|. .+.++++|++|+|++|.+....|. +..+++|++|++++|.. ..+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 478888888888887766 578888888888888865554444 77888888888888743 445543 77888888888
Q ss_pred ccCcccccccCc--ccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCC-CCcccC-cccCCCCCCCEEEccccccccc
Q 005085 386 MAGCESLRCFPQ--NIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCT-PIEEVP-LSIECLPNLEILEMSFCYSLKR 461 (715)
Q Consensus 386 L~~~~~~~~lp~--~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n-~l~~lp-~~~~~l~~L~~L~L~~n~~~~~ 461 (715)
+++|. +..+|. .+..+++|+ +|++++| .+..++ ..+..+++|++|++++|.+.+.
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~--------------------~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQ--------------------ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCC--------------------EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCCCC-CcccCchhhhccCCCCc--------------------EEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 88874 334544 455555554 6777766 466664 5688999999999999998888
Q ss_pred ccccccCCCCccEeecCCCcCCCccch-hccCCcccccccccccccccccc-hh---hcCCCCCCEEEecCCCCCC----
Q 005085 462 LSTSICKLKYLSSLDLSYCINLESFPE-ILEKMELLEEINLEEASNIKELP-SS---IENLEGLKQLKLTGCTKLG---- 532 (715)
Q Consensus 462 lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~lp-~~---l~~l~~L~~L~Ls~n~~~~---- 532 (715)
.|..+..+++|++|++++|.+ +.+|. .+..+++|+.|++++| .+..++ .. ....+.++.++++++.+..
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh
Confidence 899999999999999999975 45554 4556899999999999 544433 22 2456789999999998765
Q ss_pred -------CCCCcCeEEecCccCCCCCCCCCC-CCCCC-ceEEecCCCCCCH
Q 005085 533 -------SLPETKNWMHPYCKHYPITRVKDY-SSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 533 -------~lp~L~~L~l~~n~L~~~~lp~~l-~~l~~-~~L~l~~c~~l~~ 574 (715)
.+++|+.|++++|.++. +|..+ ..++. +.|++++|+-...
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 28899999999999997 99885 78888 9999999865444
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=4.1e-21 Score=211.50 Aligned_cols=235 Identities=17% Similarity=0.161 Sum_probs=152.6
Q ss_pred cccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 310 ESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
....++.++..++.+|.++. ++|++|+|++|.+....+. +..+++|++|+|++|......|..+.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34567788888999998765 7999999999976665555 89999999999999976666668899999999999999
Q ss_pred cccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccc-cc
Q 005085 389 CESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLST-SI 466 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~-~~ 466 (715)
|......+..+..+++|+ +|+|++|.++.+|. .+..+++|++|++++|...+.++. .+
T Consensus 133 n~l~~~~~~~~~~l~~L~--------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLR--------------------ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp SCCSBCCTTTSSSCTTCC--------------------EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CcCCccChhhhcccCCCC--------------------EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 864433344466677766 55555555555554 355666666666666544444443 35
Q ss_pred cCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCe
Q 005085 467 CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKN 539 (715)
Q Consensus 467 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~ 539 (715)
.++++|++|++++|.+. .+| .+..+++|+.|+|++|...+..|..+..+++|+.|+|++|.+... +++|+.
T Consensus 193 ~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 56666666666666433 233 255566666666666633333355566666666666666655432 456666
Q ss_pred EEecCccCCCCCCCCC-CCCCCC-ceEEecCCC
Q 005085 540 WMHPYCKHYPITRVKD-YSSTSP-VQLIFANCL 570 (715)
Q Consensus 540 L~l~~n~L~~~~lp~~-l~~l~~-~~L~l~~c~ 570 (715)
|+|++|.|+. +|.. +..++. +.|++++++
T Consensus 271 L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 271 LNLAHNNLSS--LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECCSSCCSC--CCTTSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCc--cChHHhccccCCCEEEccCCC
Confidence 6666666655 4432 344444 666665554
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=5.9e-21 Score=209.47 Aligned_cols=235 Identities=16% Similarity=0.155 Sum_probs=154.2
Q ss_pred cccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 310 ESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
....++.++..++.+|.++. ++++.|+|++|.+....+. +..+++|++|+|++|......+..+.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45677888899999998775 7999999999976555444 89999999999999865555557899999999999999
Q ss_pred cccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccc-cc
Q 005085 389 CESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLST-SI 466 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~-~~ 466 (715)
|......+..+..+++|+ +|+|++|.++.+|. .+..+++|++|++++|...+.++. .+
T Consensus 122 n~l~~~~~~~~~~l~~L~--------------------~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLK--------------------ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp SCCSSCCTTTSCSCSSCC--------------------EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CcCCeeCHhHhhccccCc--------------------eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 854433334566677666 55555566665554 355666666666666544444443 45
Q ss_pred cCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCe
Q 005085 467 CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKN 539 (715)
Q Consensus 467 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~ 539 (715)
.++++|++|++++|.+ ..+|. +..+++|+.|+|++|...+..|..+..+++|+.|+|++|.+... +++|+.
T Consensus 182 ~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTCSSCCEEECTTSCC-SSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred hcccccCeecCCCCcC-ccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 6666666666666643 34443 55666666666666633333345566666666666666655432 556666
Q ss_pred EEecCccCCCCCCCCC-CCCCCC-ceEEecCCC
Q 005085 540 WMHPYCKHYPITRVKD-YSSTSP-VQLIFANCL 570 (715)
Q Consensus 540 L~l~~n~L~~~~lp~~-l~~l~~-~~L~l~~c~ 570 (715)
|+|++|.|+. +|.. +..++. +.|++++++
T Consensus 260 L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 260 INLAHNNLTL--LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSCCCC--CCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCCCCc--cChhHhccccCCCEEEcCCCC
Confidence 6666666665 4433 344444 666666554
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-22 Score=215.03 Aligned_cols=257 Identities=11% Similarity=0.087 Sum_probs=156.7
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCc-cccccccccEEEecCCCccccc-ccCCCCCCccEEeecC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSS-KVHLQQESYRTQLSFKKVEQIW-EGQKKAPKLKYVDLNH 341 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~-~l~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~ 341 (715)
.|.+++....++.. + .++|++|+++.|. +..++. .+...++|++|++++|.++.++ ..+.++++|++|+|++
T Consensus 36 c~~~~~~l~~iP~~-~--~~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-L--TEAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCTT-C--CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eeCCCCCccccccc-c--cccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 45566555555443 2 2589999998442 223333 4566689999999999999875 5699999999999999
Q ss_pred CCCCcccCC--CCCCCcceEEEEecCCCCcccCc--hhhcccccceEeccCccccccc-CcccCCCcccE-EEcCCCCCC
Q 005085 342 STNLTRIPE--PSETPNLERMNLRNCTGLAHIPS--YVQNFNKLGNMIMAGCESLRCF-PQNIHFISSIK-IDCYKCVNL 415 (715)
Q Consensus 342 n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~--~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~-L~l~~~~~l 415 (715)
|.+. .+|. +..+++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..+..+++|+ |++++
T Consensus 110 n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~---- 183 (353)
T 2z80_A 110 NYLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA---- 183 (353)
T ss_dssp SCCS-SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE----
T ss_pred CcCC-cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC----
Confidence 9654 4553 8899999999999985 456665 7899999999999999655555 56678888888 55555
Q ss_pred CcCCCCCCCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhc---c
Q 005085 416 KEFPRISGNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEIL---E 491 (715)
Q Consensus 416 ~~l~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~---~ 491 (715)
|.++.+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ .
T Consensus 184 -----------------n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 184 -----------------SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp -----------------TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred -----------------CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 444433 3445555555555555554322222222335555555555554433222211 1
Q ss_pred CCcccccccccccc----cccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 492 KMELLEEINLEEAS----NIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 492 ~l~~L~~L~L~~n~----~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
..+.++.++++++. .+..+|..+..+++|++|+|++|.+... +++|++|++++|+++.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 22233333333331 1223455555555555555555554321 4455555665555443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=9e-22 Score=205.09 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=164.7
Q ss_pred ccccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcc--cC-CCCCCCcceEEEEecCCCCcccCchhhcccccceE
Q 005085 309 QESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTR--IP-EPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNM 384 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~--~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 384 (715)
.+|++|++++|.++.+|.. +.++++|++|+|++|.+... .+ .+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 5789999999999998876 68999999999999965422 13 36678999999999984 55678889999999999
Q ss_pred eccCcccccccC-cccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccc-c
Q 005085 385 IMAGCESLRCFP-QNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLK-R 461 (715)
Q Consensus 385 ~L~~~~~~~~lp-~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~-~ 461 (715)
++++|......+ ..+..+++|+ +|++++|.+..+ |..+..+++|++|++++|.+.+ .
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~--------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLI--------------------YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCC--------------------EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ECCCCcccccccchhhhhccCCC--------------------EEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 999985433222 3455555555 666666766644 3446778888888888887665 5
Q ss_pred ccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc-hhhcCCCCCCEEEecCCCCCCC-------
Q 005085 462 LSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGS------- 533 (715)
Q Consensus 462 lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~------- 533 (715)
+|..+..+++|++|++++|.+.+..|..+..+++|++|++++| .+..++ ..+..+++|++|+|++|.+.+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 6777888888888888888776666777788888888888888 444443 3677788888888888877653
Q ss_pred C-CCcCeEEecCccCCC
Q 005085 534 L-PETKNWMHPYCKHYP 549 (715)
Q Consensus 534 l-p~L~~L~l~~n~L~~ 549 (715)
+ ++|++|++++|+++.
T Consensus 246 ~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCTTCCEEECTTCCEEC
T ss_pred hhccCCEEEccCCCeec
Confidence 4 378888888888765
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=5e-20 Score=208.65 Aligned_cols=248 Identities=16% Similarity=0.117 Sum_probs=183.2
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCC
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHS 342 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n 342 (715)
.++++++.+..++.. +. ++|+.|+++.|. +..+|. ...+|++|++++|.++.+|. .+++|++|+|++|
T Consensus 44 ~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~---l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 44 VLNVGESGLTTLPDC-LP--AHITTLVIPDNN---LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp EEECCSSCCSCCCSC-CC--TTCSEEEECSCC---CSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred EEEecCCCcCccChh-hC--CCCcEEEecCCC---CCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 466666665555443 32 789999998442 234554 34789999999999998887 6789999999998
Q ss_pred CCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCC
Q 005085 343 TNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI 421 (715)
Q Consensus 343 ~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~ 421 (715)
.+ ..+|. .+++|++|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+ |++++| .++.+|..
T Consensus 112 ~l-~~l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~ 179 (622)
T 3g06_A 112 PL-THLPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPML 179 (622)
T ss_dssp CC-CCCCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCCC
T ss_pred cC-CCCCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCccc
Confidence 54 45665 67889999999874 5567754 488999999998 45556653 45677 777774 56677777
Q ss_pred CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 422 SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
+.+|+.|++++|.++.+|.. +++|+.|++++|.+. .+|. .+++|++|++++|.+. .+| ..+++|+.|++
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~L 248 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMV 248 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEEC
Confidence 78888899988888888763 478888888888744 4554 3478888888888554 466 45678888888
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~~ 549 (715)
++| .++.+|. .+++|+.|+|++|.+... +++|+.|+|++|++++
T Consensus 249 s~N-~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 249 SGN-RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSS-CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCC-CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 888 7777776 677888888888877643 6678888888888765
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.6e-20 Score=214.13 Aligned_cols=283 Identities=16% Similarity=0.124 Sum_probs=201.0
Q ss_pred EecCCCCcccccChhhhcCCCCccEEEEeecCccccccCCc-cccccccccEEEecCCCccccccc-CCCCCCccEEeec
Q 005085 263 FLDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMSS-KVHLQQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLN 340 (715)
Q Consensus 263 ~l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~-~l~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~ 340 (715)
.+|++++.+..+.+++|.++++|++|+++.| .+..+|. .+....+|++|++++|+++.+|.. ++++++|++|+|+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N---~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTC---CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCC---cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 6788888888888999999999999999844 3344443 456678999999999999988764 8899999999999
Q ss_pred CCCCCc-ccCC-CCCCCcceEEEEecCCCCcccCchhhccc---------------------------------------
Q 005085 341 HSTNLT-RIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFN--------------------------------------- 379 (715)
Q Consensus 341 ~n~~~~-~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~--------------------------------------- 379 (715)
+|.+.. ..|. ++.+++|++|++++|......|..+..+.
T Consensus 157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred cCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 996543 3454 67889999999988753322222221111
Q ss_pred --------------------------------------------------------------------------------
Q 005085 380 -------------------------------------------------------------------------------- 379 (715)
Q Consensus 380 -------------------------------------------------------------------------------- 379 (715)
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence
Q ss_pred ------------ccceEeccCcccccccC-------------------cccCCCcccE-EEcCCCCCC------------
Q 005085 380 ------------KLGNMIMAGCESLRCFP-------------------QNIHFISSIK-IDCYKCVNL------------ 415 (715)
Q Consensus 380 ------------~L~~L~L~~~~~~~~lp-------------------~~~~~l~~L~-L~l~~~~~l------------ 415 (715)
+|+.|++.+|......+ .....+++|+ ++++++...
T Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh
Confidence 12222222221100000 0011244555 555443210
Q ss_pred -------------------------------------CcCC----CCCCCCcEEeccCCCCcccC-cccCCCCCCCEEEc
Q 005085 416 -------------------------------------KEFP----RISGNVVELNLMCTPIEEVP-LSIECLPNLEILEM 453 (715)
Q Consensus 416 -------------------------------------~~l~----~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L 453 (715)
...+ ....+++.++++.|.+..++ ..+..+++|+.|++
T Consensus 397 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 397 ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 0000 12235577888888888654 44788999999999
Q ss_pred ccccccc-cccccccCCCCccEeecCCCcCCCccchhccCCccccccccccccccccc-chhhcCCCCCCEEEecCCCCC
Q 005085 454 SFCYSLK-RLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 454 ~~n~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~Ls~n~~~ 531 (715)
++|.... ..|..+..+++|++|+|++|.+.+..|..++.+++|++|+|++| .+..+ |..+..+++|++|+|++|++.
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 9997554 56788999999999999999888888889999999999999999 55555 557899999999999999987
Q ss_pred CC-------C-CCcCeEEecCccCCC
Q 005085 532 GS-------L-PETKNWMHPYCKHYP 549 (715)
Q Consensus 532 ~~-------l-p~L~~L~l~~n~L~~ 549 (715)
+. + ++|+.|+|++|++.-
T Consensus 556 ~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp BCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 65 3 479999999999865
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.7e-21 Score=199.23 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=161.6
Q ss_pred EEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccc
Q 005085 313 RTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESL 392 (715)
Q Consensus 313 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~ 392 (715)
.+++..+.+... .....+++|+.|++++|. ...++.+..+++|++|++++|... .+ ..+..+++|++|++++|...
T Consensus 23 ~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 23 KANLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTCSCTTSE-ECHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTSCCC
T ss_pred HHHhcCcccccc-cccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCCccC
Confidence 334444444332 223456677777777663 345556667777777777776433 33 36667777777777777443
Q ss_pred cccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCC
Q 005085 393 RCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKY 471 (715)
Q Consensus 393 ~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 471 (715)
...+..+..+++|+ +|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++
T Consensus 99 ~~~~~~~~~l~~L~--------------------~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 99 SLPNGVFDKLTNLK--------------------ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp CCCTTTTTTCTTCC--------------------EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccChhHhcCCcCCC--------------------EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 33333344444444 666777777766655 688999999999999877666667789999
Q ss_pred ccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCCCCCcCeEEecCccCCCCC
Q 005085 472 LSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPETKNWMHPYCKHYPIT 551 (715)
Q Consensus 472 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~L~~L~l~~n~L~~~~ 551 (715)
|++|++++|.+.+..+..++.+++|+.|++++|...+..|..+..+++|+.|+|++|++.+.+|+|+.|+++.|.+++ .
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g-~ 237 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSG-V 237 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG-G
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCC-c
Confidence 999999999877666667889999999999999444444445789999999999999999999999999999999886 5
Q ss_pred CCCCCCCCCC
Q 005085 552 RVKDYSSTSP 561 (715)
Q Consensus 552 lp~~l~~l~~ 561 (715)
+|.+++.+..
T Consensus 238 ip~~~~~~~~ 247 (272)
T 3rfs_A 238 VRNSAGSVAP 247 (272)
T ss_dssp BBCTTSCBCG
T ss_pred ccCcccccCC
Confidence 8998887655
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.9e-22 Score=209.40 Aligned_cols=240 Identities=18% Similarity=0.139 Sum_probs=136.2
Q ss_pred hcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCccc--ccccCC-------CCCCccEEeecCCCCCcccC
Q 005085 279 FTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQ--IWEGQK-------KAPKLKYVDLNHSTNLTRIP 349 (715)
Q Consensus 279 ~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~--lp~~~~-------~l~~L~~L~L~~n~~~~~~p 349 (715)
++..++|+.|++..|.. .+|..+. ..|++|++++|.+.. +|..+. ++++|++|+|++|.+.+.+|
T Consensus 39 ~~~~~~L~~l~l~~n~l----~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE----ADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT----CCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc----ccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 34455566666653322 3343322 237778888888753 454444 68889999999887766677
Q ss_pred C-C--CCCCcceEEEEecCCCCcccCchhhcc-----cccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCc--C
Q 005085 350 E-P--SETPNLERMNLRNCTGLAHIPSYVQNF-----NKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKE--F 418 (715)
Q Consensus 350 ~-~--~~l~~L~~L~L~~n~~l~~~p~~~~~l-----~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~--l 418 (715)
. + ..+++|++|+|++|..... |..++.+ ++|++|++++|......|..++.+++|+ |++++|..... +
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 5 4 7888999999998865444 7777777 8899999988866555557777777777 55555442221 0
Q ss_pred C-----CCCCCCcEEeccCCCCcccC---cc-cCCCCCCCEEEccccccccccc-ccccCCCCccEeecCCCcCCCccch
Q 005085 419 P-----RISGNVVELNLMCTPIEEVP---LS-IECLPNLEILEMSFCYSLKRLS-TSICKLKYLSSLDLSYCINLESFPE 488 (715)
Q Consensus 419 ~-----~~~~~L~~L~L~~n~l~~lp---~~-~~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~ 488 (715)
| ....+|++|++++|.++.++ .. +..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 0 22334455555555554222 11 2344555555555555444332 23334455555555555433 4444
Q ss_pred hccCCcccccccccccccccccchhhcCCCCCCEEEecCCCC
Q 005085 489 ILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 489 ~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~ 530 (715)
.+. ++|++|++++| .++.+|. +..+++|++|+|++|++
T Consensus 271 ~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 333 45555555555 3444443 44444444444444443
No 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=2.2e-21 Score=221.64 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=145.1
Q ss_pred CCCCcHHHHH-HHHH--HhhccCCc-eEEEEecchhhhcCCcHHHHHHHHHHHHhCCC----CCCC-------CC-cchH
Q 005085 1 MGGIGKTTIG-VVFN--QFSQKFEG-KYFMANVREESEKCGVLVHLRNQVLSKVLGEN----FDIG-------TQ-KIPQ 64 (715)
Q Consensus 1 mgGiGKTTLa-~vy~--~~~~~F~~-~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~----~~~~-------~~-~~~~ 64 (715)
|||+|||||| ++|+ +++.+|+. ++|+. +++.++ ...+.+.+...+.... .... +. .+..
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~~d----~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e 232 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNS----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCSSS----HHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCCCC----HHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHH
Confidence 8999999999 9997 57899998 77887 766543 4555555554322110 0110 01 3356
Q ss_pred HHHHHh---cCCeEEEEEeCcc------------------CChHHHHHhCcCcEEEcC------CCCHHHHHHHHHhhhc
Q 005085 65 YIRDRL---QRMKVFIVLDDVN------------------KDKTILERYGTQRIYEVE------GLNCNEVLRLFSSCAF 117 (715)
Q Consensus 65 ~l~~~L---~~kr~LlVLDDv~------------------r~~~v~~~~~~~~~~~l~------~L~~~es~~LF~~~af 117 (715)
.+++.| .+||+|||||||| |++.++..++....|.++ +|+.+|||+||+++.
T Consensus 233 ~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~- 311 (1221)
T 1vt4_I 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL- 311 (1221)
T ss_dssp HHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-
Confidence 677766 6899999999999 888888655444567777 999999999999984
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCcchhHHhhhcccCC--ChhHHHHH-----HHHh----hccCCCC---------CcC-
Q 005085 118 KENHCPEDLLKHSETAVHYAKGNPLALQVLGSSFYGK--SKPDWVNA-----LNNL----KRISGSD---------IYD- 176 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~k--~~~~w~~~-----l~~l----~~~~~~~---------i~~- 176 (715)
+.. .+++..++ |+|+||||+++|+.|+++ +.++|+.. ...+ ...+... +..
T Consensus 312 g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPe 383 (1221)
T 1vt4_I 312 DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383 (1221)
T ss_dssp CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCT
T ss_pred CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence 332 12334444 999999999999999987 67788642 1111 1111111 000
Q ss_pred ----CHHHHHHHHhhCCC-CHHHhHHHHhcccceEEe--CCeEeecHHHHHHH
Q 005085 177 ----DREHVMWILSDDYC-SVQYAMNVLVNKSLIKIS--YNKLQMHDLLQEMG 222 (715)
Q Consensus 177 ----~~~~l~~il~~~~~-~~~~~l~~L~~~~ll~~~--~~~~~mhdli~~l~ 222 (715)
..+.+..+|.+++. .+..++++|+++||++.. ...|+|||++++++
T Consensus 384 d~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp TSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 35667888988853 577899999999999986 56899999998865
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=2.3e-21 Score=202.94 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=26.8
Q ss_pred ccccEEEecCCCccccc-ccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecC
Q 005085 309 QESYRTQLSFKKVEQIW-EGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNC 365 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 365 (715)
++|++|++++|.++.++ ..+..+++|++|+|++|.+... +.+..+++|++|++++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNN 90 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EEETTCTTCCEEECCSS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hhhhhcCCCCEEECcCC
Confidence 34555555555555433 3345555555555555533222 22445555555555554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=8.2e-21 Score=195.66 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=151.7
Q ss_pred ecCCCCcccccChhhhcCCCCccEEEEeecCccccccCC-ccccccccccEEEecCCCcccc-cccCCCCCCccEEeecC
Q 005085 264 LDLSKIEEINLDPRAFTNMSNVRLLKFYISGHFDVSKMS-SKVHLQQESYRTQLSFKKVEQI-WEGQKKAPKLKYVDLNH 341 (715)
Q Consensus 264 l~l~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~-~~l~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 341 (715)
++.+......++. +-.++|+.|+++.+. +..++ ..+....+|++|++++|.++.+ |..+..+++|++|++++
T Consensus 16 ~~c~~~~l~~ip~---~~~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 16 TSCPQQGLQAVPV---GIPAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp EECCSSCCSSCCT---TCCTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEcCcCCcccCCc---CCCCCceEEEeeCCc---CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4455544444432 225789999998432 22233 3455668999999999999977 67799999999999999
Q ss_pred CCCCccc-CC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCC
Q 005085 342 STNLTRI-PE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFP 419 (715)
Q Consensus 342 n~~~~~~-p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~ 419 (715)
|..+..+ |. +..+++|++|++++|......|..+.++++|++|++++|......+..+..+++|+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------------- 156 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT------------- 156 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc-------------
Confidence 9745555 44 89999999999999977666678899999999999999865444444566666666
Q ss_pred CCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccc
Q 005085 420 RISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEE 498 (715)
Q Consensus 420 ~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 498 (715)
+|++++|.++.+|.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 157 -------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 157 -------HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp -------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred -------EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 555556666655543 566666666666666665555666666666666666666555544455666666666
Q ss_pred cccccccc
Q 005085 499 INLEEASN 506 (715)
Q Consensus 499 L~L~~n~~ 506 (715)
|++++|+.
T Consensus 230 L~l~~N~~ 237 (285)
T 1ozn_A 230 LRLNDNPW 237 (285)
T ss_dssp EECCSSCE
T ss_pred EeccCCCc
Confidence 66666633
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=3.7e-22 Score=208.56 Aligned_cols=240 Identities=13% Similarity=0.032 Sum_probs=171.3
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCC-cccCC-CC-------CCCcceEEEEecCCCCcccCchh--hc
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNL-TRIPE-PS-------ETPNLERMNLRNCTGLAHIPSYV--QN 377 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~-~~~p~-~~-------~l~~L~~L~L~~n~~l~~~p~~~--~~ 377 (715)
.+|++|++++|.+ .+|..+... |+.|+|++|.+. ..+|. +. .+++|++|+|++|...+.+|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 5788899999999 788766544 888999988652 33444 33 68999999999997777788766 88
Q ss_pred ccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccC-cccCCCCCCCEEEcccc
Q 005085 378 FNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVP-LSIECLPNLEILEMSFC 456 (715)
Q Consensus 378 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n 456 (715)
+++|++|++++|..... |..+..+.. ....+|++|++++|.+..++ ..++.+++|++|++++|
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~---------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQ---------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHT---------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHH---------------hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 99999999999854443 655443310 01234567888888888776 56788888888888888
Q ss_pred ccccc--ccccc--cCCCCccEeecCCCcCCC--ccc-hhccCCcccccccccccccccccc-hhhcCCCCCCEEEecCC
Q 005085 457 YSLKR--LSTSI--CKLKYLSSLDLSYCINLE--SFP-EILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGC 528 (715)
Q Consensus 457 ~~~~~--lp~~~--~~l~~L~~L~L~~n~~~~--~~p-~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~Ls~n 528 (715)
.+.+. +|..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++|...+..| ..+..+++|++|+|++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 76654 34444 788888888888886552 222 334577888888888884333333 34566788888888888
Q ss_pred CCCCC----CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCC
Q 005085 529 TKLGS----LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 529 ~~~~~----lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
.+... .++|++|++++|.+++ +|. +..++. +.|++++++
T Consensus 264 ~l~~ip~~~~~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 264 GLKQVPKGLPAKLSVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCCSSCCSEEEEEECCSSCCCS--CCC-TTTSCEEEEEECTTCT
T ss_pred ccChhhhhccCCceEEECCCCCCCC--Chh-HhhCCCCCEEeccCCC
Confidence 87633 2468888888888887 666 777777 888887763
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2.4e-20 Score=191.19 Aligned_cols=209 Identities=20% Similarity=0.172 Sum_probs=128.3
Q ss_pred ccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEec
Q 005085 309 QESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIM 386 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L 386 (715)
.+|++|++++|.++.++. .+.++++|++|++++|.+....+. +..+++|++|++++|......+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 457777777777776654 567777777777777754433332 667777777777776544444456677777777777
Q ss_pred cCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcc--cCcccCCCCCCCEEEcccccccccccc
Q 005085 387 AGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEE--VPLSIECLPNLEILEMSFCYSLKRLST 464 (715)
Q Consensus 387 ~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~ 464 (715)
++|......+..+..+++| ++|++++|.++. +|..+..+++|++|++++|.+.+..+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTL--------------------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTC--------------------CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCccccCchhcccCCCC--------------------CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 7764333222234433333 466666666664 566677777777777777776665555
Q ss_pred cccCCCCcc----EeecCCCcCCCccchhccCCcccccccccccccccccchh-hcCCCCCCEEEecCCCCCCCCCCcCe
Q 005085 465 SICKLKYLS----SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGSLPETKN 539 (715)
Q Consensus 465 ~~~~l~~L~----~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~Ls~n~~~~~lp~L~~ 539 (715)
.+..+++|+ .|++++|.+.+..+. .....+|+.|++++| .++.+|.. +..+++|+.|+|++|++...+|.++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred HhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccCCchHH
Confidence 565555555 677777755433333 333346777777777 45555543 46666677777766666665555443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=5.5e-20 Score=188.51 Aligned_cols=214 Identities=16% Similarity=0.084 Sum_probs=164.3
Q ss_pred EEEecCCCcccccccCCCCCCccEEeecCCCCCcccC-CCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCccc
Q 005085 313 RTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIP-EPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCES 391 (715)
Q Consensus 313 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~ 391 (715)
..+-.+..+..+|..+. ++|++|++++|.+....+ .+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 44556677778888764 689999999996655444 488999999999999865544456789999999999999865
Q ss_pred ccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc-ccCCCCCCCEEEcccccccc-cccccccCC
Q 005085 392 LRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLK-RLSTSICKL 469 (715)
Q Consensus 392 ~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~-~lp~~~~~l 469 (715)
....|..+.++++|+ +|++++|.+..++. .++.+++|++|++++|.+.+ .+|..+..+
T Consensus 89 ~~~~~~~~~~l~~L~--------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 89 QSLALGAFSGLSSLQ--------------------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp CEECTTTTTTCTTCC--------------------EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred CccChhhhcCCcccc--------------------EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 554555666666655 77777777777765 58889999999999998766 368889999
Q ss_pred CCccEeecCCCcCCCccchhccCCcccc----cccccccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcC
Q 005085 470 KYLSSLDLSYCINLESFPEILEKMELLE----EINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETK 538 (715)
Q Consensus 470 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~----~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~ 538 (715)
++|++|++++|.+.+..+..+..+++|+ .|++++| .+..++.......+|+.|+|++|.+... +++|+
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhccccccc
Confidence 9999999999987766666677777676 7888888 6777777666666888888888876543 56788
Q ss_pred eEEecCccCCC
Q 005085 539 NWMHPYCKHYP 549 (715)
Q Consensus 539 ~L~l~~n~L~~ 549 (715)
.|++++|+++.
T Consensus 228 ~L~l~~N~~~c 238 (276)
T 2z62_A 228 KIWLHTNPWDC 238 (276)
T ss_dssp EEECCSSCBCC
T ss_pred EEEccCCcccc
Confidence 88888887764
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=209.61 Aligned_cols=189 Identities=13% Similarity=0.125 Sum_probs=89.6
Q ss_pred cccEEEecCCCccccc-ccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 310 ESYRTQLSFKKVEQIW-EGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
+|++|+|++|.+..++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|. +..+| ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcC
Confidence 5555555555555443 345555555555555554332222 5555555555555542 22222 124455555555
Q ss_pred cccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCccc-CcccCCCCCCCEEEccccccccccccccc
Q 005085 389 CESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSIC 467 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~ 467 (715)
|......+ ..+.+|+.|++++|.++.+ |..++.+++|++|++++|.+.+..|..+.
T Consensus 109 N~l~~~~~-----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 109 NNISRVSC-----------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp SCCCCEEE-----------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CcCCCCCc-----------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 43222111 1122334555555555543 22345555555555555555554444443
Q ss_pred -CCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCCC
Q 005085 468 -KLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 468 -~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~ 530 (715)
.+++|++|+|++|.+.+. |. ...+++|+.|+|++| .+..+|+.+..+++|+.|+|++|.+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC
T ss_pred hhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC
Confidence 455555555555543322 22 223555555555555 4444444455555555555555443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.8e-20 Score=196.25 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=99.9
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
++|++|++++|.+..++. +..+++|++|++++|.+ ..++ ..++|++|++++|.... ++. ..+++|+.|++++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~---~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~ 129 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL---VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLAN 129 (317)
T ss_dssp TTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EEEE---ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCS
T ss_pred CcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cccc---CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCC
Confidence 444444444444443332 44444444444444422 1111 12444444444443222 111 1134444444444
Q ss_pred cccccccCcccCCCcccE-EEcCCCCCCCcCCC----CCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccccccc
Q 005085 389 CESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR----ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLS 463 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp 463 (715)
|......|..+..+++|+ |++++|......+. ...+|++|++++|.++.+|. ...+++|++|++++|.+.+ +|
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-EC
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-ch
Confidence 433333333444444444 44444322211111 12345566666666665543 2346666666666665443 33
Q ss_pred ccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccc-cccchhhcCCCCCCEEEecC
Q 005085 464 TSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNI-KELPSSIENLEGLKQLKLTG 527 (715)
Q Consensus 464 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~lp~~l~~l~~L~~L~Ls~ 527 (715)
..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+.. ..+|..+..+++|+.|++++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 44666666666666666433 45555666666666666666333 34555566666666666653
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.1e-21 Score=216.62 Aligned_cols=301 Identities=12% Similarity=0.051 Sum_probs=187.8
Q ss_pred hhhhcCCCCccEEEEeecCccccccCCccccccc----cccEEEecCCCcc-----cccccCCCCCCccEEeecCCCCCc
Q 005085 276 PRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQ----ESYRTQLSFKKVE-----QIWEGQKKAPKLKYVDLNHSTNLT 346 (715)
Q Consensus 276 ~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~----~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~n~~~~ 346 (715)
+..+..+++|++|+++.|. +....+........ +|++|++++|.+. .++..+..+++|++|+|++|.+..
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4556677888888887332 21111111111112 5888888888777 456777788888888888876432
Q ss_pred ccCC------CCCCCcceEEEEecCCCCcc----cCchhhcccccceEeccCcccccccCcccC-----CCcccE-EEcC
Q 005085 347 RIPE------PSETPNLERMNLRNCTGLAH----IPSYVQNFNKLGNMIMAGCESLRCFPQNIH-----FISSIK-IDCY 410 (715)
Q Consensus 347 ~~p~------~~~l~~L~~L~L~~n~~l~~----~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~-----~l~~L~-L~l~ 410 (715)
..+. ....++|++|++++|..... ++..+..+++|++|++++|......+..+. ..++|+ |+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 2111 23456788888888754432 345566678888888888754332222221 245777 8888
Q ss_pred CCCCCCc----CCC---CCCCCcEEeccCCCCccc------CcccCCCCCCCEEEccccccccc----ccccccCCCCcc
Q 005085 411 KCVNLKE----FPR---ISGNVVELNLMCTPIEEV------PLSIECLPNLEILEMSFCYSLKR----LSTSICKLKYLS 473 (715)
Q Consensus 411 ~~~~l~~----l~~---~~~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~ 473 (715)
+|..-.. ++. ...+|++|++++|.+... +..+..+++|++|++++|.+... ++..+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 7643221 232 246778888888877643 22234578888888888876543 566677788888
Q ss_pred EeecCCCcCCCccchhcc-----CCcccccccccccccccc----cchhhcCCCCCCEEEecCCCCCCC-----------
Q 005085 474 SLDLSYCINLESFPEILE-----KMELLEEINLEEASNIKE----LPSSIENLEGLKQLKLTGCTKLGS----------- 533 (715)
Q Consensus 474 ~L~L~~n~~~~~~p~~~~-----~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~Ls~n~~~~~----------- 533 (715)
+|++++|.+....+..+. ..++|++|++++|..... ++..+..+++|++|+|++|.+...
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 888888865443333222 236788888888843322 456677788888888888876432
Q ss_pred -CCCcCeEEecCccCCC---CCCCCCCCCCCC-ceEEecCCCCCCHHHHH
Q 005085 534 -LPETKNWMHPYCKHYP---ITRVKDYSSTSP-VQLIFANCLKLNESIWA 578 (715)
Q Consensus 534 -lp~L~~L~l~~n~L~~---~~lp~~l~~l~~-~~L~l~~c~~l~~~~~~ 578 (715)
.++|++|++++|.+++ ..+|..+..++. +.|++++| .++.....
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~ 416 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGIL 416 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHH
Confidence 4588888888888772 126666666666 88888877 46654333
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.7e-19 Score=182.67 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=132.4
Q ss_pred cccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccC-CCCCCCcceEEEEecCCCCcccC-chhhcccccceEecc
Q 005085 310 ESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIP-EPSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMA 387 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~ 387 (715)
..+.++++++.++.+|..+. ++|++|+|++|.+....+ .+..+++|++|++++|.. ..+| ..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECC
Confidence 56778888888888887664 678888888886543333 278888888888888754 4444 445778888888888
Q ss_pred CcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccc
Q 005085 388 GCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSI 466 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~ 466 (715)
+|......+..+..+++| ++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+
T Consensus 94 ~n~l~~~~~~~~~~l~~L--------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNL--------------------AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp SSCCCCCCTTTTTTCSSC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCCcCCHhHcccccCC--------------------CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 874333222333444444 3666666666666544 5677788888888777665555556
Q ss_pred cCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEEecCCCCCCC
Q 005085 467 CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 467 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
..+++|++|++++|.+.+..+..+..+++|++|++++| .+..+|. .+..+++|+.|+|++|++...
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 77777888888777665555555777777777777777 5555554 355566666666666554433
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.7e-19 Score=186.10 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=95.4
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEecc
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMA 387 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~ 387 (715)
.++++++++++.++.+|..+. +++++|+|++|.+....+. +..+++|++|+|++|. +..++.. +.+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECC
Confidence 345555555555655555443 4555666665544333232 5555555555555543 2222221 444555555555
Q ss_pred CcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccccc
Q 005085 388 GCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSI 466 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~ 466 (715)
+|. +..+|..+..+++| ++|++++|.++.+|. .+..+++|++|++++|.+.+..+..+
T Consensus 86 ~N~-l~~l~~~~~~l~~L--------------------~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 86 HNQ-LQSLPLLGQTLPAL--------------------TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp SSC-CSSCCCCTTTCTTC--------------------CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCc-CCcCchhhccCCCC--------------------CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 542 22333333323322 244455555555442 35555556666665555444444445
Q ss_pred cCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCCC
Q 005085 467 CKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT 529 (715)
Q Consensus 467 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~ 529 (715)
..+++|+.|++++|.+.+..+..+..+++|+.|+|++| .+..+|..+..+++|+.|+|++|+
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 55555666666555444333333455555566666555 455555555544444444444443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=6e-20 Score=203.59 Aligned_cols=211 Identities=13% Similarity=-0.034 Sum_probs=172.7
Q ss_pred CCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEE
Q 005085 329 KKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKI 407 (715)
Q Consensus 329 ~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L 407 (715)
..+++|++|+|++|.+....|. +..+++|++|+|++|...+..| ++.+++|++|+|++|. +..+|. .
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~----- 98 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----G----- 98 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----C-----
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----C-----
Confidence 3445899999999866555443 8888899999998886544433 7888888888888874 333332 1
Q ss_pred EcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc
Q 005085 408 DCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP 487 (715)
Q Consensus 408 ~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 487 (715)
.+|++|++++|.+..+|.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|
T Consensus 99 ---------------~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 99 ---------------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ---------------TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ---------------CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 3566899999999988753 57899999999999988888899999999999999999888788
Q ss_pred hhcc-CCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCCCCCCCCCCCCCC
Q 005085 488 EILE-KMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHYPITRVKDYSSTS 560 (715)
Q Consensus 488 ~~~~-~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~~~~lp~~l~~l~ 560 (715)
..+. .+++|+.|+|++| .+..+|. ...+++|+.|+|++|.+.+. +++|+.|++++|.|+. +|..+..++
T Consensus 162 ~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~ 237 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQ 237 (487)
T ss_dssp GGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCT
T ss_pred HHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc--cchhhccCC
Confidence 7775 7999999999999 6777765 45699999999999998764 6789999999999998 999998888
Q ss_pred C-ceEEecCCCCC
Q 005085 561 P-VQLIFANCLKL 572 (715)
Q Consensus 561 ~-~~L~l~~c~~l 572 (715)
. +.|++++|+-.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 8 99999988644
No 76
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.80 E-value=8.2e-20 Score=208.19 Aligned_cols=218 Identities=20% Similarity=0.283 Sum_probs=149.3
Q ss_pred CCCCcHHHHH-HHHHHh---hccCC-ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-cchHHHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF---SQKFE-GKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-KIPQYIRDRL 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~---~~~F~-~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~~~~~l~~~L 70 (715)
|||+|||||| ++|++. +.+|+ .++|+. +++... ..++..+ .++...+..... ...+. .....+++.+
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~-~~~~~~l-~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 231 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK-SGLLMKL-QNLCTRLDQDESFSQRLPLNIEEAKDRLRILM 231 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH-HHHHHHH-HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch-HHHHHHH-HHHHHHhccccccccCCCCCHHHHHHHHHHHH
Confidence 7999999999 999853 78895 678887 554311 1112222 223344432111 11122 4566777777
Q ss_pred cC--CeEEEEEeCcc------------------CChHHHHHhCcCcEEEc---CCCCHHHHHHHHHhhhcCCCCCChhHH
Q 005085 71 QR--MKVFIVLDDVN------------------KDKTILERYGTQRIYEV---EGLNCNEVLRLFSSCAFKENHCPEDLL 127 (715)
Q Consensus 71 ~~--kr~LlVLDDv~------------------r~~~v~~~~~~~~~~~l---~~L~~~es~~LF~~~af~~~~~~~~~~ 127 (715)
.+ +++|||||||| |++.++..++ ...|++ ++|+.+||++||...++.. .....
T Consensus 232 ~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~ 307 (591)
T 1z6t_A 232 LRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLP 307 (591)
T ss_dssp HHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSC
T ss_pred ccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---ccccc
Confidence 66 79999999998 6766665543 345666 4899999999999998752 22334
Q ss_pred HHHHHHHHHhCCCcchhHHhhhcccCCChhHHHHHHHHhhccCCCCCcC-------------------------------
Q 005085 128 KHSETAVHYAKGNPLALQVLGSSFYGKSKPDWVNALNNLKRISGSDIYD------------------------------- 176 (715)
Q Consensus 128 ~~~~~i~~~c~glPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~~~i~~------------------------------- 176 (715)
+.+.+|+++|+|+||||+.+|+.++++. .+|+..++.+.......+..
T Consensus 308 ~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~l 386 (591)
T 1z6t_A 308 EQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDL 386 (591)
T ss_dssp THHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 5789999999999999999999998763 47998888876543222110
Q ss_pred ---------CHHHHHHHHhhCCCCHHHhHHHHhcccceEEe--C--CeEeecHHHHHHHHHHH
Q 005085 177 ---------DREHVMWILSDDYCSVQYAMNVLVNKSLIKIS--Y--NKLQMHDLLQEMGREIV 226 (715)
Q Consensus 177 ---------~~~~l~~il~~~~~~~~~~l~~L~~~~ll~~~--~--~~~~mhdli~~l~~~i~ 226 (715)
..+.+..+|..+...+..+++.|+++||+... + ..|+||+++++++....
T Consensus 387 a~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 387 SILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp GGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred cccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 12234444444333456679999999999876 2 37999999999988763
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=5.9e-22 Score=218.90 Aligned_cols=309 Identities=12% Similarity=0.053 Sum_probs=215.0
Q ss_pred EecCCCCcccccCh-hhhcCCCCccEEEEeecCcccc---ccCCccccccccccEEEecCCCcccc-ccc-CCCCC----
Q 005085 263 FLDLSKIEEINLDP-RAFTNMSNVRLLKFYISGHFDV---SKMSSKVHLQQESYRTQLSFKKVEQI-WEG-QKKAP---- 332 (715)
Q Consensus 263 ~l~l~~~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~---~~l~~~l~~~~~L~~L~L~~~~l~~l-p~~-~~~l~---- 332 (715)
.+|++.+....... ..+..+++|++|+++.+. +.. ..++..+...++|++|++++|.+... +.. ...++
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 45666555443333 337889999999999443 322 24555555568999999999998742 222 22333
Q ss_pred CccEEeecCCCCCc----ccCC-CCCCCcceEEEEecCCCCcccCchhh-----cccccceEeccCccccc----ccCcc
Q 005085 333 KLKYVDLNHSTNLT----RIPE-PSETPNLERMNLRNCTGLAHIPSYVQ-----NFNKLGNMIMAGCESLR----CFPQN 398 (715)
Q Consensus 333 ~L~~L~L~~n~~~~----~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~-----~l~~L~~L~L~~~~~~~----~lp~~ 398 (715)
+|++|+|++|.+.. .++. +..+++|++|++++|......+..+. ..++|++|++++|.... .++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 79999999997652 3454 88999999999999864333233332 25679999999996544 24556
Q ss_pred cCCCcccE-EEcCCCCCCCcC-----CC----CCCCCcEEeccCCCCcc-----cCcccCCCCCCCEEEcccccccccc-
Q 005085 399 IHFISSIK-IDCYKCVNLKEF-----PR----ISGNVVELNLMCTPIEE-----VPLSIECLPNLEILEMSFCYSLKRL- 462 (715)
Q Consensus 399 ~~~l~~L~-L~l~~~~~l~~l-----~~----~~~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~~~~~l- 462 (715)
+..+++|+ |++++|. +... .. ...+|++|++++|.++. ++..+..+++|++|++++|.+....
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 66788999 9999976 3321 11 24489999999999886 5777888999999999999765432
Q ss_pred ----cccccCCCCccEeecCCCcCCCc----cchhccCCcccccccccccccccccchhhc-----CCCCCCEEEecCCC
Q 005085 463 ----STSICKLKYLSSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKELPSSIE-----NLEGLKQLKLTGCT 529 (715)
Q Consensus 463 ----p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~-----~l~~L~~L~Ls~n~ 529 (715)
+..+..+++|++|++++|.+... ++..+..+++|++|++++|......+..+. ..++|++|+|++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 22334689999999999976543 677788899999999999943222222222 23699999999999
Q ss_pred CCCC-----------CCCcCeEEecCccCCCCC---CCCCCCC-CCC-ceEEecCCCCCCH
Q 005085 530 KLGS-----------LPETKNWMHPYCKHYPIT---RVKDYSS-TSP-VQLIFANCLKLNE 574 (715)
Q Consensus 530 ~~~~-----------lp~L~~L~l~~n~L~~~~---lp~~l~~-l~~-~~L~l~~c~~l~~ 574 (715)
+... +++|++|++++|.+++.. +...+.. .+. +.|++++| .++.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~ 384 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD 384 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCCh
Confidence 7754 589999999999877611 1122221 333 89999988 5665
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.2e-20 Score=197.20 Aligned_cols=227 Identities=17% Similarity=0.160 Sum_probs=145.7
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcc-cCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEec
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTR-IPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIM 386 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~-~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L 386 (715)
.+++.|++++|.+...+..+..+++|++|+|++|.+... ++. +..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456666666666655544455566666666666543322 333 455566666666665444344455555666666666
Q ss_pred cCccccc--ccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCC-CCcc--cCcccCCCC-CCCEEEccccc--c
Q 005085 387 AGCESLR--CFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCT-PIEE--VPLSIECLP-NLEILEMSFCY--S 458 (715)
Q Consensus 387 ~~~~~~~--~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n-~l~~--lp~~~~~l~-~L~~L~L~~n~--~ 458 (715)
++|..+. .+|..+..++ +|++|++++| .++. ++..+..++ +|++|++++|. +
T Consensus 150 ~~~~~l~~~~l~~~~~~~~--------------------~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCS--------------------RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCT--------------------TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred CCCCCCCHHHHHHHHhcCC--------------------CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 6553332 1333333333 4557777777 6663 566678888 99999999984 3
Q ss_pred c-ccccccccCCCCccEeecCCCc-CCCccchhccCCccccccccccccccc-ccchhhcCCCCCCEEEecCCCCCCC--
Q 005085 459 L-KRLSTSICKLKYLSSLDLSYCI-NLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGS-- 533 (715)
Q Consensus 459 ~-~~lp~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~Ls~n~~~~~-- 533 (715)
. +.+|..+..+++|++|++++|. .....+..+..+++|++|++++|..+. .....+.++++|+.|+|++| +...
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHH
Confidence 3 5667777889999999999998 445667778889999999999984221 11125778999999999998 3332
Q ss_pred --C-CCcCeEEecCccCCCCCCCCCCC
Q 005085 534 --L-PETKNWMHPYCKHYPITRVKDYS 557 (715)
Q Consensus 534 --l-p~L~~L~l~~n~L~~~~lp~~l~ 557 (715)
+ .+|+.|++++|.+++ ..|..++
T Consensus 289 ~~l~~~l~~L~l~~n~l~~-~~~~~~~ 314 (336)
T 2ast_B 289 QLLKEALPHLQINCSHFTT-IARPTIG 314 (336)
T ss_dssp HHHHHHSTTSEESCCCSCC-TTCSSCS
T ss_pred HHHHhhCcceEEecccCcc-ccCCccc
Confidence 2 247778888888887 3555544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.2e-18 Score=179.54 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=147.7
Q ss_pred CCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE
Q 005085 328 QKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK 406 (715)
Q Consensus 328 ~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 406 (715)
+.+++++++++++++.+ ..+|. +. ++|++|+|++|......|..+..+++|++|++++|. +..+|.. ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~--- 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLP--- 77 (290)
T ss_dssp EECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCT---
T ss_pred ccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCC---
Confidence 46788899999998854 55654 43 689999999987665566788899999999999884 3333331 2233
Q ss_pred EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCcc
Q 005085 407 IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESF 486 (715)
Q Consensus 407 L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~ 486 (715)
+|++|++++|.++.+|..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.+..
T Consensus 78 -----------------~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 78 -----------------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp -----------------TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred -----------------cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 456888888999999988899999999999999877776778899999999999999777666
Q ss_pred chhccCCcccccccccccccccccchh-hcCCCCCCEEEecCCCCCCC------CCCcCeEEecCccCC
Q 005085 487 PEILEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGS------LPETKNWMHPYCKHY 548 (715)
Q Consensus 487 p~~~~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~Ls~n~~~~~------lp~L~~L~l~~n~L~ 548 (715)
+..+..+++|+.|+|++| .++.+|.. +..+++|++|+|++|.+... .++|+.|++++|++.
T Consensus 141 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred hhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 667788999999999998 66677764 46677777777777766532 334666666666543
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.3e-18 Score=174.16 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=136.9
Q ss_pred ccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCcccC-chhhcccccceE
Q 005085 309 QESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNM 384 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L 384 (715)
.+|++|++++|.++.+|. .+..+++|++|++++|..+..++. +..+++|++|++++|+.+..+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478888888888888776 577888888888888863455553 7788888888888733445555 567788888888
Q ss_pred eccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCC-CCcccCcc-cCCCCCCC-EEEccccccccc
Q 005085 385 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCT-PIEEVPLS-IECLPNLE-ILEMSFCYSLKR 461 (715)
Q Consensus 385 ~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n-~l~~lp~~-~~~l~~L~-~L~L~~n~~~~~ 461 (715)
++++|. +..+|. +..+++|+ .|++|++++| .++.+|.. +..+++|+ +|++++|.+. .
T Consensus 111 ~l~~n~-l~~lp~-~~~l~~L~-----------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~ 170 (239)
T 2xwt_C 111 GIFNTG-LKMFPD-LTKVYSTD-----------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170 (239)
T ss_dssp EEEEEC-CCSCCC-CTTCCBCC-----------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E
T ss_pred eCCCCC-Cccccc-cccccccc-----------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c
Confidence 888874 344665 44444432 1347777777 77777664 77788888 8888887755 5
Q ss_pred ccccccCCCCccEeecCCCc-CCCccchhccCC-cccccccccccccccccchhhcCCCCCCEEEecCCC
Q 005085 462 LSTSICKLKYLSSLDLSYCI-NLESFPEILEKM-ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT 529 (715)
Q Consensus 462 lp~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l-~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~ 529 (715)
+|......++|+.|++++|. +.+..+..+..+ ++|+.|++++| .++.+|.. .+++|+.|+++++.
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC-
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCcc
Confidence 55444344778888888875 443334557777 78888888877 66666654 56777777777654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.2e-18 Score=181.47 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=89.4
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
.+|++|+++++.++.++ ++..+++|++|+|++|.+ ..++.+..+++|++|++++|. +..++ .+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTT
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCC
Confidence 46666666666666654 455666666666666643 233335666666666666653 23332 455555555555555
Q ss_pred cccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccC
Q 005085 389 CESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
|. +..+|. +..+++| ++|++++|.++.++. +..+++|++|++++|.+.. ++. +..
T Consensus 117 n~-l~~~~~-l~~l~~L--------------------~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~ 171 (308)
T 1h6u_A 117 TQ-ITDVTP-LAGLSNL--------------------QVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LAN 171 (308)
T ss_dssp SC-CCCCGG-GTTCTTC--------------------CEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred CC-CCCchh-hcCCCCC--------------------CEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcC
Confidence 53 222222 2222222 244444444444443 4455555555555554332 222 445
Q ss_pred CCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecCC
Q 005085 469 LKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGC 528 (715)
Q Consensus 469 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n 528 (715)
+++|+.|++++|.+.+ ++. +..+++|++|++++| .+..+++ +..+++|+.|++++|
T Consensus 172 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 172 LSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEE
T ss_pred CCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCC
Confidence 5555555555543322 221 444445555555554 3333332 333444444443333
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.5e-18 Score=173.68 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=143.1
Q ss_pred CcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccC-chhhcccccceEeccCcccccccC-
Q 005085 320 KVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAGCESLRCFP- 396 (715)
Q Consensus 320 ~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~~~~~~~lp- 396 (715)
.++.+|. +. ++|++|++++|.+....+. +..+++|++|++++|..+..++ ..+.++++|++|++++|..+..+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3777777 43 4899999999965444442 8889999999999986456665 478889999999998833444444
Q ss_pred cccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCC---EEEcccc-cccccccccccCCCCc
Q 005085 397 QNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLE---ILEMSFC-YSLKRLSTSICKLKYL 472 (715)
Q Consensus 397 ~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~---~L~L~~n-~~~~~lp~~~~~l~~L 472 (715)
..+..+++|+ +|++++|.++.+|. +..+++|+ +|++++| .+.+..+..+.++++|
T Consensus 99 ~~f~~l~~L~--------------------~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 99 DALKELPLLK--------------------FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp TSEECCTTCC--------------------EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred HHhCCCCCCC--------------------EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 3455455544 77788888888887 77888887 9999998 6555555568888999
Q ss_pred c-EeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCC-CCCCEEEecCCCCCCC----CCCcCeEEecCc
Q 005085 473 S-SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENL-EGLKQLKLTGCTKLGS----LPETKNWMHPYC 545 (715)
Q Consensus 473 ~-~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l-~~L~~L~Ls~n~~~~~----lp~L~~L~l~~n 545 (715)
+ +|++++|.+. .+|......++|+.|++++|+.++.+|. .+..+ ++|+.|+|++|++... +++|+.|+++++
T Consensus 158 ~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 9 9999988665 5665433347899999998854666654 46667 7777777777766543 455666666554
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.3e-18 Score=181.08 Aligned_cols=189 Identities=16% Similarity=0.207 Sum_probs=138.6
Q ss_pred CCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEE
Q 005085 329 KKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKID 408 (715)
Q Consensus 329 ~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~ 408 (715)
..+++|++|++++|. ...+|.+..+++|++|++++|. +..++. +..+++|++|++++|. +..+| .+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L--- 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSI--- 109 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTC---
T ss_pred HHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCC---
Confidence 457788888888884 4556777888888888888874 444544 7888888888888874 44444 24444444
Q ss_pred cCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccch
Q 005085 409 CYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPE 488 (715)
Q Consensus 409 l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 488 (715)
++|++++|.++.+|. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ ++.
T Consensus 110 -----------------~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~ 168 (308)
T 1h6u_A 110 -----------------KTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP 168 (308)
T ss_dssp -----------------CEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG
T ss_pred -----------------CEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh
Confidence 477777777777765 7888888888888887654433 7788888888888886544 444
Q ss_pred hccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCccCCC
Q 005085 489 ILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 489 ~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~L~~ 549 (715)
+..+++|+.|++++| .+..++. +..+++|++|+|++|.+... +++|+.|++++|+++.
T Consensus 169 -l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 778888888888888 6666665 77888888888888887654 7788888888888776
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=6.5e-18 Score=172.38 Aligned_cols=193 Identities=18% Similarity=0.189 Sum_probs=145.0
Q ss_pred CCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcc-cCCCcccEEEc
Q 005085 332 PKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQN-IHFISSIKIDC 409 (715)
Q Consensus 332 ~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~L~l 409 (715)
.++++++++++.+ ..+|. +. ++|++|+|++|......+..+.++++|++|++++|.. ..+|.. +..+++|
T Consensus 16 ~~~~~l~~~~~~l-~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L---- 87 (270)
T 2o6q_A 16 NNKNSVDCSSKKL-TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNL---- 87 (270)
T ss_dssp TTTTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTC----
T ss_pred CCCCEEEccCCCC-CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCC----
Confidence 3578899998854 55665 43 6899999999865444445788899999999998853 344432 3445544
Q ss_pred CCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccch
Q 005085 410 YKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPE 488 (715)
Q Consensus 410 ~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 488 (715)
++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 88 ----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 88 ----------------ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp ----------------CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----------------CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 4788888888877764 67889999999999988777777788999999999999876655555
Q ss_pred hccCCcccccccccccccccccch-hhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 489 ILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 489 ~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
.+..+++|++|++++| .+..+|. .+..+++|++|+|++|.+... +++|+.|++++|++..
T Consensus 152 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 6888999999999998 5665654 477888888888888876543 5677888888877654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=183.76 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=38.7
Q ss_pred cCCCCccEeecCCCcCCCccchhccCC---cccccccccccccccccchhhcCCCCCCEEEecCCCCCCC-----CCCcC
Q 005085 467 CKLKYLSSLDLSYCINLESFPEILEKM---ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS-----LPETK 538 (715)
Q Consensus 467 ~~l~~L~~L~L~~n~~~~~~p~~~~~l---~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~ 538 (715)
..+++|++|++++|.+.+..|..+..+ ++|++|++++| .++.+|..+. ++|++|+|++|++.+. +|+|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence 344455555555554444434333333 35555555555 3344444332 4555555555544431 45566
Q ss_pred eEEecCccCCC
Q 005085 539 NWMHPYCKHYP 549 (715)
Q Consensus 539 ~L~l~~n~L~~ 549 (715)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 66666665543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=2.9e-18 Score=175.25 Aligned_cols=208 Identities=12% Similarity=0.024 Sum_probs=123.0
Q ss_pred cCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcce
Q 005085 280 TNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLE 358 (715)
Q Consensus 280 ~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~ 358 (715)
..+++|+.|++..+.. ..++ .+...++|++|++++|.++.++ .+..+++|++|+|++|.+....+. +..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i---~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI---KSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCC---CCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCc---cccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3456666666652211 1122 1233355666666666655543 455566666666666544332222 45566666
Q ss_pred EEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCccc
Q 005085 359 RMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEV 438 (715)
Q Consensus 359 ~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~l 438 (715)
+|++++|......+..++.+++|++|++++|......|..+..++ +|++|++++|.++.+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--------------------~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT--------------------NLTELDLSYNQLQSL 172 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------------------TCCEEECCSSCCCCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc--------------------cCCEEECCCCCcCcc
Confidence 666666543333333455566666666665532222222233333 345777777777777
Q ss_pred Ccc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCC
Q 005085 439 PLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENL 517 (715)
Q Consensus 439 p~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l 517 (715)
|.. ++.+++|++|++++|.+.+..|..+..+++|+.|++++|...+ .+++|+.|+++.|...+.+|.+++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 655 5778888888888888777666667888888888888886543 35567888888876777788776655
Q ss_pred CC
Q 005085 518 EG 519 (715)
Q Consensus 518 ~~ 519 (715)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=9e-18 Score=178.20 Aligned_cols=215 Identities=21% Similarity=0.218 Sum_probs=158.9
Q ss_pred ccccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCccc-CchhhcccccceE
Q 005085 309 QESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHI-PSYVQNFNKLGNM 384 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~-p~~~~~l~~L~~L 384 (715)
.++++|+|++|+|+.+|.+ +.++++|++|+|++|.+.+.+|. |.++++|+.+.+.+++.+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 5789999999999999874 89999999999999987777775 788988876544443355555 5778999999999
Q ss_pred eccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCC-----CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccc
Q 005085 385 IMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRI-----SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYS 458 (715)
Q Consensus 385 ~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~-----~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~ 458 (715)
++++|......+..+.....+. +++.++..+..++.. ...++.|++++|.|+.+|.......+|++|++.+|+.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 9999854443344445566666 888888887776642 2356788899999988888877778888888887666
Q ss_pred cccccc-cccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCEEEecC
Q 005085 459 LKRLST-SICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 527 (715)
Q Consensus 459 ~~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~ 527 (715)
.+.+|. .|.++++|++|++++|.+ ..+|. ..+.+|+.|.+.++..++.+|. +.++++|+.+++++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRI-HSLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCC-CCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCCCHHHhccCcccchhhcCCCCc-CccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 666664 568888888888888864 44553 2244455555555556777774 67777777777754
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=2.8e-19 Score=192.68 Aligned_cols=233 Identities=12% Similarity=0.069 Sum_probs=120.1
Q ss_pred ccccccccEEEecCCCccc-----ccccCCCCCCccEEeecCCCC---CcccCC--------CCCCCcceEEEEecCCCC
Q 005085 305 VHLQQESYRTQLSFKKVEQ-----IWEGQKKAPKLKYVDLNHSTN---LTRIPE--------PSETPNLERMNLRNCTGL 368 (715)
Q Consensus 305 l~~~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~n~~---~~~~p~--------~~~l~~L~~L~L~~n~~l 368 (715)
+...++|++|++++|.+.. ++..+..+++|++|+|++|.. ...+|. +..+++|++|+|++|...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3334556666666666653 334466777777777777522 122332 256677777777777544
Q ss_pred c----ccCchhhcccccceEeccCcccccc----cCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCc--cc
Q 005085 369 A----HIPSYVQNFNKLGNMIMAGCESLRC----FPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIE--EV 438 (715)
Q Consensus 369 ~----~~p~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~--~l 438 (715)
. .+|..+..+++|++|+|++|..... ++..+..+.. ..+. ....+|++|++++|.++ .+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~--~~~~---------~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV--NKKA---------KNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH--HHHH---------HTCCCCCEEECCSSCCTGGGH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhh--hhhc---------ccCCCCcEEECCCCCCCcHHH
Confidence 4 3556677777777777777754322 1221211100 0000 00023345555555553 22
Q ss_pred C---cccCCCCCCCEEEcccccccc-----cccccccCCCCccEeecCCCcCC----CccchhccCCccccccccccccc
Q 005085 439 P---LSIECLPNLEILEMSFCYSLK-----RLSTSICKLKYLSSLDLSYCINL----ESFPEILEKMELLEEINLEEASN 506 (715)
Q Consensus 439 p---~~~~~l~~L~~L~L~~n~~~~-----~lp~~~~~l~~L~~L~L~~n~~~----~~~p~~~~~l~~L~~L~L~~n~~ 506 (715)
| ..+..+++|++|++++|.+.. ..|..+..+++|++|+|++|.+. ..+|..+..+++|++|+|++| .
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~ 255 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-L 255 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-C
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC-C
Confidence 3 234455556666666555431 22324555556666666655543 344555555556666666655 2
Q ss_pred ccc-----cchhhc--CCCCCCEEEecCCCCCCC------------CCCcCeEEecCccCCC
Q 005085 507 IKE-----LPSSIE--NLEGLKQLKLTGCTKLGS------------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 507 ~~~-----lp~~l~--~l~~L~~L~Ls~n~~~~~------------lp~L~~L~l~~n~L~~ 549 (715)
++. +|..+. .+++|++|+|++|.+... +|+|++|++++|+++.
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 222 344442 255666666666655541 4566666666666554
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=6e-20 Score=197.87 Aligned_cols=244 Identities=12% Similarity=0.059 Sum_probs=181.4
Q ss_pred ccEEEecCCCcccccccCCCCCCccEEeecCCCCCcc----cC-CCCCCCcceEEEEecCCC---CcccCchh-------
Q 005085 311 SYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTR----IP-EPSETPNLERMNLRNCTG---LAHIPSYV------- 375 (715)
Q Consensus 311 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~----~p-~~~~l~~L~~L~L~~n~~---l~~~p~~~------- 375 (715)
|+...++...+..++..+..+++|++|+|++|.+... ++ .+..+++|++|+|++|.. ...+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 3433444555566777788899999999999976543 22 277899999999999732 22345444
Q ss_pred hcccccceEeccCccccc----ccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcc-----cCcccCCC-
Q 005085 376 QNFNKLGNMIMAGCESLR----CFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEE-----VPLSIECL- 445 (715)
Q Consensus 376 ~~l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~-----lp~~~~~l- 445 (715)
..+++|++|+|++|.... .+|..+..+++|+ +|+|++|.+.. ++..+..+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~--------------------~L~L~~n~l~~~~~~~l~~~l~~l~ 150 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE--------------------HLYLHNNGLGPQAGAKIARALQELA 150 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCC--------------------EEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCC--------------------EEECcCCCCCHHHHHHHHHHHHHHh
Confidence 678999999999986544 3555555555554 77777777763 33334444
Q ss_pred --------CCCCEEEccccccc-cccc---ccccCCCCccEeecCCCcCCC-----ccchhccCCcccccccccccccc-
Q 005085 446 --------PNLEILEMSFCYSL-KRLS---TSICKLKYLSSLDLSYCINLE-----SFPEILEKMELLEEINLEEASNI- 507 (715)
Q Consensus 446 --------~~L~~L~L~~n~~~-~~lp---~~~~~l~~L~~L~L~~n~~~~-----~~p~~~~~l~~L~~L~L~~n~~~- 507 (715)
++|++|++++|.+. ..+| ..+..+++|++|++++|.+.. ..|..+..+++|+.|+|++|...
T Consensus 151 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred hhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 89999999999876 4555 467789999999999997652 34447889999999999999432
Q ss_pred ---cccchhhcCCCCCCEEEecCCCCCCC-------------CCCcCeEEecCccCCCC---CCCCCC-CCCCC-ceEEe
Q 005085 508 ---KELPSSIENLEGLKQLKLTGCTKLGS-------------LPETKNWMHPYCKHYPI---TRVKDY-SSTSP-VQLIF 566 (715)
Q Consensus 508 ---~~lp~~l~~l~~L~~L~Ls~n~~~~~-------------lp~L~~L~l~~n~L~~~---~lp~~l-~~l~~-~~L~l 566 (715)
..+|..+..+++|++|+|++|.+... +++|++|+|++|.++.. .+|..+ .+++. +.|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 67888899999999999999998643 78999999999998751 367666 44666 99999
Q ss_pred cCCCCCCH
Q 005085 567 ANCLKLNE 574 (715)
Q Consensus 567 ~~c~~l~~ 574 (715)
++|+--..
T Consensus 311 ~~N~l~~~ 318 (386)
T 2ca6_A 311 NGNRFSEE 318 (386)
T ss_dssp TTSBSCTT
T ss_pred cCCcCCcc
Confidence 98864433
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=3.4e-17 Score=165.10 Aligned_cols=179 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEecc
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMA 387 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~ 387 (715)
...++++++++.++.+|..+. ++|+.|+|++|.+....+. +..+++|++|+|++|......|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356778888888888887765 5788888888866555443 7777888888888775555445556777777777777
Q ss_pred CcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEccccccccccccccc
Q 005085 388 GCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSIC 467 (715)
Q Consensus 388 ~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~ 467 (715)
+|......+.. +..+++|++|++++|.+.+..+..+.
T Consensus 92 ~n~l~~~~~~~-------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 92 NNQLASLPLGV-------------------------------------------FDHLTQLDKLYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp TSCCCCCCTTT-------------------------------------------TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCcccccChhH-------------------------------------------hcccCCCCEEEcCCCcCCCcChhHhc
Confidence 76433222222 34444555555555544433333344
Q ss_pred CCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc-hhhcCCCCCCEEEecCCCCCCC
Q 005085 468 KLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 468 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
.+++|++|++++|.+.+..+..++.+++|+.|+|++| .+..+| ..+..+++|+.|+|++|++...
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555555555555443333334555555555555555 333333 2455566666666666665544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=176.62 Aligned_cols=219 Identities=18% Similarity=0.141 Sum_probs=149.4
Q ss_pred ccccEEEecCCCccc--ccc--cCCCCCCccEEeecCCCCCcccCC-C--CCCCcceEEEEecCCCCcccC----chhhc
Q 005085 309 QESYRTQLSFKKVEQ--IWE--GQKKAPKLKYVDLNHSTNLTRIPE-P--SETPNLERMNLRNCTGLAHIP----SYVQN 377 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~--lp~--~~~~l~~L~~L~L~~n~~~~~~p~-~--~~l~~L~~L~L~~n~~l~~~p----~~~~~ 377 (715)
..++.|.+.+..+.. +.. ....+++|++|++++|.+....|. + ..+++|++|+|++|......+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356777887776652 111 122346688888888877666665 4 788888888888886655444 34456
Q ss_pred ccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCc-------CCCCCCCCcEEeccCCCCcccCcc----cCCC
Q 005085 378 FNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKE-------FPRISGNVVELNLMCTPIEEVPLS----IECL 445 (715)
Q Consensus 378 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~-------l~~~~~~L~~L~L~~n~l~~lp~~----~~~l 445 (715)
+++|++|++++|......|..+..+++|+ |++++|..... ......+|++|++++|.++.+|.. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 88888888888866555566777788888 88887654321 113445677888888877765542 4567
Q ss_pred CCCCEEEcccccccccccccccCC---CCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCCCCE
Q 005085 446 PNLEILEMSFCYSLKRLSTSICKL---KYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQ 522 (715)
Q Consensus 446 ~~L~~L~L~~n~~~~~lp~~~~~l---~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 522 (715)
++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|+|++| .+..+|. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCccE
Confidence 788888888887766666666665 57888888887655 5666553 67888888887 5656554 567778888
Q ss_pred EEecCCCCCC
Q 005085 523 LKLTGCTKLG 532 (715)
Q Consensus 523 L~Ls~n~~~~ 532 (715)
|+|++|++..
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 8888877653
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=7.8e-19 Score=185.30 Aligned_cols=235 Identities=18% Similarity=0.237 Sum_probs=167.0
Q ss_pred ChhhhcCC--CCccEEEEeecCccccccCCccccccccccEEEecCCCccc--ccccCCCCCCccEEeecCCCCCcccCC
Q 005085 275 DPRAFTNM--SNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQ--IWEGQKKAPKLKYVDLNHSTNLTRIPE 350 (715)
Q Consensus 275 ~~~~~~~l--~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~n~~~~~~p~ 350 (715)
.+..+..+ ++++.|++..+ .+. ..+..+....+|++|++++|.+.. +|..+..+++|++|+|++|.+....+.
T Consensus 60 ~~~~~~~~~~~~l~~L~l~~n-~l~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 60 HPDVTGRLLSQGVIAFRCPRS-FMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp CHHHHHHHHHTTCSEEECTTC-EEC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred CHHHHHhhhhccceEEEcCCc-ccc--ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 36677777 89999999833 221 222223345899999999999873 778889999999999999976655554
Q ss_pred -CCCCCcceEEEEecCCCCc--ccCchhhcccccceEeccCcccccc--cCcccCCCc-ccEEEcCCCCCCCcCCCCCCC
Q 005085 351 -PSETPNLERMNLRNCTGLA--HIPSYVQNFNKLGNMIMAGCESLRC--FPQNIHFIS-SIKIDCYKCVNLKEFPRISGN 424 (715)
Q Consensus 351 -~~~l~~L~~L~L~~n~~l~--~~p~~~~~l~~L~~L~L~~~~~~~~--lp~~~~~l~-~L~L~l~~~~~l~~l~~~~~~ 424 (715)
++.+++|++|++++|..+. .++..+..+++|++|++++|..+.. ++..+..++ +|+
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~------------------ 198 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT------------------ 198 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC------------------
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC------------------
Confidence 7889999999999995454 3667788999999999999944432 455555566 665
Q ss_pred CcEEeccCCC--C--cccCcccCCCCCCCEEEccccc-ccccccccccCCCCccEeecCCCcCC-CccchhccCCccccc
Q 005085 425 VVELNLMCTP--I--EEVPLSIECLPNLEILEMSFCY-SLKRLSTSICKLKYLSSLDLSYCINL-ESFPEILEKMELLEE 498 (715)
Q Consensus 425 L~~L~L~~n~--l--~~lp~~~~~l~~L~~L~L~~n~-~~~~lp~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~ 498 (715)
+|++++|. + ..+|..+..+++|++|++++|. +....+..+..+++|++|++++|... ......++.+++|+.
T Consensus 199 --~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 199 --QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp --EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred --EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 55555553 2 3556667778888888888888 55566677888888888888888522 122225777888888
Q ss_pred ccccccccccccchhhcCC-CCCCEEEecCCCCCCCCCC
Q 005085 499 INLEEASNIKELPSSIENL-EGLKQLKLTGCTKLGSLPE 536 (715)
Q Consensus 499 L~L~~n~~~~~lp~~l~~l-~~L~~L~Ls~n~~~~~lp~ 536 (715)
|++++| .... .+..+ .+|..|++++|.+.+..|.
T Consensus 277 L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 277 LQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp EECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred EeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 888887 2221 22222 2355566888888777553
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.7e-16 Score=168.31 Aligned_cols=212 Identities=20% Similarity=0.190 Sum_probs=132.3
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCcccC-chhhcccccceEeccC
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAG 388 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~ 388 (715)
++++-++++++.+|.++ .+++++|+|++|.+ +.+|. |.++++|++|+|++|...+.+| ..|.++++|+.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677889999999877 36899999999955 56664 8999999999999998777777 4678898887654444
Q ss_pred ccccccc-CcccCCCcccE-EEcCCCCCCCcCCCC----CCCCcEEeccC-CCCcccCcc-cCCC-CCCCEEEccccccc
Q 005085 389 CESLRCF-PQNIHFISSIK-IDCYKCVNLKEFPRI----SGNVVELNLMC-TPIEEVPLS-IECL-PNLEILEMSFCYSL 459 (715)
Q Consensus 389 ~~~~~~l-p~~~~~l~~L~-L~l~~~~~l~~l~~~----~~~L~~L~L~~-n~l~~lp~~-~~~l-~~L~~L~L~~n~~~ 459 (715)
+..+..+ |..+..+++|+ |+++++ .++.+|.. ..++..|++.+ +.+..+|.. +..+ ..++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 3345554 56678888888 666664 33333321 12334555533 455555543 3333 24566666666533
Q ss_pred ccccccccCCCCccEeecCCCcCCCccch-hccCCcccccccccccccccccchhhcCCCCCCEEEecCCCCC
Q 005085 460 KRLSTSICKLKYLSSLDLSYCINLESFPE-ILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 460 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 531 (715)
.+|.......+|++|++++|+.++.+|. .+..+++|+.|++++| .++.+|. ..+.+|+.|.+.++..+
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNL 236 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCc
Confidence 3444444455666666665545555553 3556666666666666 5555554 22445555555544433
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.2e-16 Score=161.02 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=100.5
Q ss_pred EEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 427 ELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 427 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+|+|++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|
T Consensus 63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N- 141 (251)
T 3m19_A 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN- 141 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-
Confidence 44444444554443 3678899999999999988777778899999999999999877666666899999999999999
Q ss_pred cccccch-hhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 506 NIKELPS-SIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 506 ~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
.++.+|. .+..+++|++|+|++|.+... +++|+.|++++|+++.
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6667766 689999999999999987654 6789999999999875
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=8.4e-19 Score=199.99 Aligned_cols=295 Identities=10% Similarity=0.019 Sum_probs=171.8
Q ss_pred hhcCCCCccEEEEeecCcc--ccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCc---cc-CCC
Q 005085 278 AFTNMSNVRLLKFYISGHF--DVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLT---RI-PEP 351 (715)
Q Consensus 278 ~~~~l~~L~~L~l~~n~~~--~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~---~~-p~~ 351 (715)
...++++|+.|+++.+... ....++..+...++|++|+++++.+..+|..+..+++|++|+++.+.... .. ..+
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 3456677777777633221 11233333344467777777777777777667777777777776432221 11 136
Q ss_pred CCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccc-cCcccCCCcccE-EEcCCCCCCCcCC---CCCCCCc
Q 005085 352 SETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRC-FPQNIHFISSIK-IDCYKCVNLKEFP---RISGNVV 426 (715)
Q Consensus 352 ~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~-lp~~~~~l~~L~-L~l~~~~~l~~l~---~~~~~L~ 426 (715)
..+++|+.|+++++ ....+|..+..+++|++|++++|..... ++..+..+++|+ |+++++..-..++ ....+|+
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 67777888877774 4555667777778888888888762221 223345677777 7666321111111 2345677
Q ss_pred EEecc-----------CCCCcc--cCcccCCCCCCCEEEcccccccccccccccC-CCCccEeecCC---CcCCCc----
Q 005085 427 ELNLM-----------CTPIEE--VPLSIECLPNLEILEMSFCYSLKRLSTSICK-LKYLSSLDLSY---CINLES---- 485 (715)
Q Consensus 427 ~L~L~-----------~n~l~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~-l~~L~~L~L~~---n~~~~~---- 485 (715)
+|+++ ++.++. ++.....+++|++|+++.|.+.+..+..++. +++|++|++++ |...+.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 77777 345542 2332445777778877666666555555554 77777777762 222332
Q ss_pred --cchhccCCccccccccccccc--ccccchhh-cCCCCCCEEEecCCCCCC--------CCCCcCeEEecCccCCCCCC
Q 005085 486 --FPEILEKMELLEEINLEEASN--IKELPSSI-ENLEGLKQLKLTGCTKLG--------SLPETKNWMHPYCKHYPITR 552 (715)
Q Consensus 486 --~p~~~~~l~~L~~L~L~~n~~--~~~lp~~l-~~l~~L~~L~Ls~n~~~~--------~lp~L~~L~l~~n~L~~~~l 552 (715)
++..+..+++|+.|+++.|.. ....+..+ ..+++|++|+|++|.+.. .+++|++|++++|++++..+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 333355677777777765432 22222233 346777888887777643 26777788888777654233
Q ss_pred CCCCCCCCC-ceEEecCCCCCCH
Q 005085 553 VKDYSSTSP-VQLIFANCLKLNE 574 (715)
Q Consensus 553 p~~l~~l~~-~~L~l~~c~~l~~ 574 (715)
+..+..++. +.|++++|. ++.
T Consensus 506 ~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHHhcCccCeeECcCCc-CCH
Confidence 433344445 777777775 443
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=3.1e-18 Score=182.72 Aligned_cols=241 Identities=11% Similarity=0.014 Sum_probs=117.6
Q ss_pred EEecCCCccc-ccccCCCCCCccEEeecCCCCCcccC----C-CCCCC-cceEEEEecCCCCcccCchhhcc-----ccc
Q 005085 314 TQLSFKKVEQ-IWEGQKKAPKLKYVDLNHSTNLTRIP----E-PSETP-NLERMNLRNCTGLAHIPSYVQNF-----NKL 381 (715)
Q Consensus 314 L~L~~~~l~~-lp~~~~~l~~L~~L~L~~n~~~~~~p----~-~~~l~-~L~~L~L~~n~~l~~~p~~~~~l-----~~L 381 (715)
++++.|.++. +|..+...++|++|+|++|.+....+ . +..++ +|++|+|++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4555666653 33334444456666666664332222 2 44555 66666666664433334444443 666
Q ss_pred ceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-----cCC-CCCCCEEEccc
Q 005085 382 GNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-----IEC-LPNLEILEMSF 455 (715)
Q Consensus 382 ~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-----~~~-l~~L~~L~L~~ 455 (715)
++|+|++|......+..+... +.....+|++|++++|.++..+.. +.. .++|++|++++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~---------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT---------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH---------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred cEEECcCCcCChHHHHHHHHH---------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 666666664332222211100 000012334555555555543321 223 24666666666
Q ss_pred ccccc----cccccccCCC-CccEeecCCCcCCCccchh----ccCC-cccccccccccccccc-----cchhhcCC-CC
Q 005085 456 CYSLK----RLSTSICKLK-YLSSLDLSYCINLESFPEI----LEKM-ELLEEINLEEASNIKE-----LPSSIENL-EG 519 (715)
Q Consensus 456 n~~~~----~lp~~~~~l~-~L~~L~L~~n~~~~~~p~~----~~~l-~~L~~L~L~~n~~~~~-----lp~~l~~l-~~ 519 (715)
|.+.. .++..+..++ +|++|++++|.+.+..+.. +..+ ++|++|+|++| .++. ++..+..+ ++
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTT
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCC
Confidence 65442 2333334444 6666666666554433322 2233 36666666666 3433 44444443 36
Q ss_pred CCEEEecCCCCCCC-----------CCCcCeEEecCccCCC------CCCCCCCCCCCC-ceEEecCCC
Q 005085 520 LKQLKLTGCTKLGS-----------LPETKNWMHPYCKHYP------ITRVKDYSSTSP-VQLIFANCL 570 (715)
Q Consensus 520 L~~L~Ls~n~~~~~-----------lp~L~~L~l~~n~L~~------~~lp~~l~~l~~-~~L~l~~c~ 570 (715)
|++|+|++|.+... +++|+.|++++|.+.. ..++..+..++. +.|+++++.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 66666666665442 4566666666666332 113344445554 666666553
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=1.5e-16 Score=178.01 Aligned_cols=186 Identities=14% Similarity=0.191 Sum_probs=105.3
Q ss_pred cccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 310 ESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+|+.|++++|.++.+|..+. ++|++|+|++|.+ ..+| ..+++|++|+|++|.. ..+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l-~~ip--~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNAL-ISLP--ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCC-SCCC--CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCC-cccc--cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCCC
Confidence 56666666666666666542 5677777776643 3555 4566677777776643 33555 443 6777777766
Q ss_pred ccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccC
Q 005085 390 ESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
. +..+|. .+++|+ |++++| .++.+|..+.+|++|+|++|.++.+|. +. ++|+.|+|++|.+. .+|. +..
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~ 200 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV 200 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC-
T ss_pred c-CCCCCC---cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH
Confidence 3 333554 345555 444443 233344444455666666666666666 44 66666666666544 4554 433
Q ss_pred CCCc-------cEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCC
Q 005085 469 LKYL-------SSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENL 517 (715)
Q Consensus 469 l~~L-------~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l 517 (715)
+| +.|+|++|.+. .+|..+..+++|+.|+|++|+..+.+|..+..+
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 45 66666666433 455555556666666666665555555555443
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.8e-18 Score=197.24 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=108.2
Q ss_pred hhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCc--C---CCCCCCCcEEeccCCCCc--ccCcccCCCC
Q 005085 375 VQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKE--F---PRISGNVVELNLMCTPIE--EVPLSIECLP 446 (715)
Q Consensus 375 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~--l---~~~~~~L~~L~L~~n~l~--~lp~~~~~l~ 446 (715)
+..+++|+.|+++++ ....+|..+..+++|+ |++++|. +.. + .....+|++|+++ +.+. .++.....++
T Consensus 266 l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred hhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 334444444444442 2233444444455555 5555554 221 1 1233455555555 2222 2222234456
Q ss_pred CCCEEEccc----------c-cccc-cccccccCCCCccEeecCCCcCCCccchhccC-Ccccccccccc---cccccc-
Q 005085 447 NLEILEMSF----------C-YSLK-RLSTSICKLKYLSSLDLSYCINLESFPEILEK-MELLEEINLEE---ASNIKE- 509 (715)
Q Consensus 447 ~L~~L~L~~----------n-~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~---n~~~~~- 509 (715)
+|++|++++ | .+.. .++.....+++|++|+++.+.+.+..+..+.. +++|+.|++++ |+.++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 666666662 2 2221 12222344667777777555554444444444 77788888863 224443
Q ss_pred -----cchhhcCCCCCCEEEecCCC--CCC--------CCCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCCCC
Q 005085 510 -----LPSSIENLEGLKQLKLTGCT--KLG--------SLPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLKLN 573 (715)
Q Consensus 510 -----lp~~l~~l~~L~~L~Ls~n~--~~~--------~lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~l~ 573 (715)
++..+..+++|++|+|++|. +.. .+|+|++|++++|.+++..+|..+..++. +.|++++|. ++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CB
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-Cc
Confidence 33346678888888887655 222 17889999999888775345555556666 889999997 66
Q ss_pred HH
Q 005085 574 ES 575 (715)
Q Consensus 574 ~~ 575 (715)
..
T Consensus 502 ~~ 503 (592)
T 3ogk_B 502 ER 503 (592)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=4e-18 Score=181.86 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=43.5
Q ss_pred ccccEEEecCCCccccc-----ccCCCCC-CccEEeecCCCCCcccCC-CCCC-----CcceEEEEecCCCCcccCchh-
Q 005085 309 QESYRTQLSFKKVEQIW-----EGQKKAP-KLKYVDLNHSTNLTRIPE-PSET-----PNLERMNLRNCTGLAHIPSYV- 375 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp-----~~~~~l~-~L~~L~L~~n~~~~~~p~-~~~l-----~~L~~L~L~~n~~l~~~p~~~- 375 (715)
.+|++|++++|.++..+ ..+..++ +|++|+|++|.+....+. +..+ ++|++|+|++|......+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 34555555566665443 3455566 666666666644333222 3222 667777777664333333322
Q ss_pred ---hcc-cccceEeccCcc
Q 005085 376 ---QNF-NKLGNMIMAGCE 390 (715)
Q Consensus 376 ---~~l-~~L~~L~L~~~~ 390 (715)
..+ ++|++|++++|.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCccEEECcCCc
Confidence 233 667777777764
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.1e-16 Score=154.39 Aligned_cols=133 Identities=19% Similarity=0.181 Sum_probs=105.6
Q ss_pred EEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 427 ELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 427 ~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N- 134 (208)
T 2o6s_A 56 QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN- 134 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-
Confidence 555555555555544 577888888888888866655556788888999999888766655566788899999999998
Q ss_pred cccccch-hhcCCCCCCEEEecCCCCCCCCCCcCeEEecCccCCCCCCCCCCCCCCC
Q 005085 506 NIKELPS-SIENLEGLKQLKLTGCTKLGSLPETKNWMHPYCKHYPITRVKDYSSTSP 561 (715)
Q Consensus 506 ~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~lp~L~~L~l~~n~L~~~~lp~~l~~l~~ 561 (715)
.+..+|. .+..+++|++|+|++|++...+|+|+.|+++.|.+++ .+|.+++.++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g-~ip~~~~~l~~ 190 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSG-VVRNSAGSVAP 190 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTT-TBBCTTSSBCT
T ss_pred ccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCc-eeeccCccccC
Confidence 5556655 4788999999999999999999999999999999886 58998887655
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=3.7e-18 Score=194.72 Aligned_cols=297 Identities=12% Similarity=0.112 Sum_probs=163.8
Q ss_pred hhhc-CCCCccEEEEeecCccccccCCccccccccccEEEecCCCccc-----ccccCCCCCCccEEeecCCCCCcccC-
Q 005085 277 RAFT-NMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQ-----IWEGQKKAPKLKYVDLNHSTNLTRIP- 349 (715)
Q Consensus 277 ~~~~-~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~n~~~~~~p- 349 (715)
..+. .+++|+.|++..+..+....++......++|++|++++|.+.. ++.....+++|++|++++|. ..++
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~ 200 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF 200 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH
Confidence 3443 5788888888733222222233333345688888888877553 33334567788888888774 1111
Q ss_pred ----C-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcc-------------------ccc-----------c
Q 005085 350 ----E-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCE-------------------SLR-----------C 394 (715)
Q Consensus 350 ----~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~-------------------~~~-----------~ 394 (715)
. +..+++|++|++++|.....+|..+..+++|+.|++..+. .+. .
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 1 2346778888887774444455555555555555543321 111 1
Q ss_pred cCcccCCCcccE-EEcCCCCCCCc--C---CCCCCCCcEEeccCC---------------------------------CC
Q 005085 395 FPQNIHFISSIK-IDCYKCVNLKE--F---PRISGNVVELNLMCT---------------------------------PI 435 (715)
Q Consensus 395 lp~~~~~l~~L~-L~l~~~~~l~~--l---~~~~~~L~~L~L~~n---------------------------------~l 435 (715)
+|..+..+++|+ |++++|. +.. + .....+|++|++++| .+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 222222345555 6665554 221 0 112334444444444 22
Q ss_pred cc--cCcccCCCCCCCEEEccccccccccccccc-CCCCccEeecC-----CCcCCCcc------chhccCCcccccccc
Q 005085 436 EE--VPLSIECLPNLEILEMSFCYSLKRLSTSIC-KLKYLSSLDLS-----YCINLESF------PEILEKMELLEEINL 501 (715)
Q Consensus 436 ~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~-~l~~L~~L~L~-----~n~~~~~~------p~~~~~l~~L~~L~L 501 (715)
+. +......+++|++|.+..|.+....+..+. .+++|+.|+++ +|...+.. +..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 21 001012355666665555544443333333 47778888887 33333322 223566778888888
Q ss_pred cccccccccchhhcC-CCCCCEEEecCCCCCCC--------CCCcCeEEecCccCCCCCCCCCCCCCCC-ceEEecCCCC
Q 005085 502 EEASNIKELPSSIEN-LEGLKQLKLTGCTKLGS--------LPETKNWMHPYCKHYPITRVKDYSSTSP-VQLIFANCLK 571 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~-l~~L~~L~Ls~n~~~~~--------lp~L~~L~l~~n~L~~~~lp~~l~~l~~-~~L~l~~c~~ 571 (715)
+++ .....+..+.. +++|+.|+|++|.+... +|+|++|++++|++++..++..+..++. +.|++++|+.
T Consensus 440 ~~~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CSS-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCc-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 663 33333344444 88899999999886532 7899999999998865333334444555 8899999976
Q ss_pred CCHHHHH
Q 005085 572 LNESIWA 578 (715)
Q Consensus 572 l~~~~~~ 578 (715)
+.....
T Consensus 519 -~~~~~~ 524 (594)
T 2p1m_B 519 -SFGACK 524 (594)
T ss_dssp -BHHHHH
T ss_pred -CHHHHH
Confidence 444333
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.5e-16 Score=150.09 Aligned_cols=179 Identities=11% Similarity=0.004 Sum_probs=119.3
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcc
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCE 390 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~ 390 (715)
+.++.+++.++.+|..+ .++|++|++++|.+....+. +..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666677777777655 35788888888755433333 6777888888888775443333456777888888888774
Q ss_pred cccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCC
Q 005085 391 SLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKL 469 (715)
Q Consensus 391 ~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l 469 (715)
.....+..+..+++|+ +|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+
T Consensus 88 l~~~~~~~~~~l~~L~--------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLK--------------------ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CCCCCTTTTTTCTTCC--------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCccCHhHhcCccCCC--------------------EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 3332223344444444 666677777766654 5778888888888887665555557778
Q ss_pred CCccEeecCCCcCCCccchhccCCcccccccccccccccccchhhcCCCC
Q 005085 470 KYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEG 519 (715)
Q Consensus 470 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 519 (715)
++|++|++++|... +.+++|+.|+++.|...+.+|.+++.++.
T Consensus 148 ~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 148 TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88888888887543 34557788888888777788877766554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=3.9e-16 Score=160.88 Aligned_cols=169 Identities=20% Similarity=0.292 Sum_probs=87.7
Q ss_pred CCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcC
Q 005085 331 APKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCY 410 (715)
Q Consensus 331 l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~ 410 (715)
+++|++|++++|. +..++.+..+++|++|++++|.. ..++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 45 l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~---- 115 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLK---- 115 (291)
T ss_dssp HHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCC----
T ss_pred cCcccEEEccCCC-cccChhHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCC----
Confidence 4445555555542 23334444455555555555432 22222 4555555555555542 222222 33333332
Q ss_pred CCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhc
Q 005085 411 KCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEIL 490 (715)
Q Consensus 411 ~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~ 490 (715)
+|++++|.++.++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..| +
T Consensus 116 ----------------~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 116 ----------------SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp ----------------EEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred ----------------EEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 4444444454443 355666666777766664443 346666677777777665444333 6
Q ss_pred cCCcccccccccccccccccchhhcCCCCCCEEEecCCCCC
Q 005085 491 EKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 491 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 531 (715)
..+++|+.|++++| .++.+|. +..+++|+.|++++|++.
T Consensus 175 ~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 175 AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCccc
Confidence 66667777777776 5555543 555666666665555443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=5.6e-16 Score=173.35 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=148.8
Q ss_pred CccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEe
Q 005085 284 NVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLR 363 (715)
Q Consensus 284 ~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~ 363 (715)
+|+.|+++.+. +..+|..+ .++|++|++++|.++.+| ..+++|++|+|++|.+.. +|.+.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~---L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLN---LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSC---CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECC
T ss_pred CccEEEeCCCC---CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECC
Confidence 88899998432 23356544 268999999999999998 457899999999996544 777544 99999999
Q ss_pred cCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCccc
Q 005085 364 NCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSI 442 (715)
Q Consensus 364 ~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~ 442 (715)
+|.. ..+|. .+++|+.|++++|. +..+|. .+++|+ |++++|. ++.+|....+|+.|+|++|.|+.+|. +
T Consensus 129 ~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 129 NNQL-TMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-C
T ss_pred CCcC-CCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhh-H
Confidence 9854 44776 68999999999985 445776 478899 9999864 66677755789999999999999998 6
Q ss_pred CCCCCC-------CEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcc
Q 005085 443 ECLPNL-------EILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMEL 495 (715)
Q Consensus 443 ~~l~~L-------~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 495 (715)
.. +| +.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|..+..+++
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 54 77 99999999865 68888888999999999999998888887766543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2e-16 Score=178.87 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=68.6
Q ss_pred CCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccE-EE
Q 005085 330 KAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-ID 408 (715)
Q Consensus 330 ~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~ 408 (715)
.+++|+.|++++|. +..++.+..+++|+.|+|++|... .++. +..+++|+.|+|++|. +..+| .+..+++|+ |+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 34455555555542 233444555555555555554322 2222 4555555555555542 22222 233333333 22
Q ss_pred cCCCCCCCcCC--CCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCcc
Q 005085 409 CYKCVNLKEFP--RISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESF 486 (715)
Q Consensus 409 l~~~~~l~~l~--~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~ 486 (715)
+++|. +..++ ..+.+|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ +
T Consensus 116 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l 190 (605)
T 1m9s_A 116 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L 190 (605)
T ss_dssp CTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C
T ss_pred ecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C
Confidence 22211 00000 0111223444444444444 234445555555555554433333 4445555555555543322 2
Q ss_pred chhccCCccccccccccc
Q 005085 487 PEILEKMELLEEINLEEA 504 (715)
Q Consensus 487 p~~~~~l~~L~~L~L~~n 504 (715)
| .+..+++|+.|+|++|
T Consensus 191 ~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp G-GGTTCTTCSEEECCSE
T ss_pred h-HHccCCCCCEEEccCC
Confidence 2 2444445555555544
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=9.2e-16 Score=158.10 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=135.8
Q ss_pred ccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCc
Q 005085 347 RIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVV 426 (715)
Q Consensus 347 ~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~ 426 (715)
.+..+..+++|++|++++|. +..++ .+..+++|+.|++++|. +..++. +..+++| +
T Consensus 38 ~~~~~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L--------------------~ 93 (291)
T 1h6t_A 38 DAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNL--------------------G 93 (291)
T ss_dssp SEECHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTC--------------------C
T ss_pred cccchhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCC--------------------C
Confidence 33445677888999998874 44554 47888999999999884 333443 5555555 4
Q ss_pred EEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccccccc
Q 005085 427 ELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASN 506 (715)
Q Consensus 427 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 506 (715)
+|++++|.++.+|. +..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+.+. ..++.+++|+.|++++| .
T Consensus 94 ~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~ 167 (291)
T 1h6t_A 94 WLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-Q 167 (291)
T ss_dssp EEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-C
T ss_pred EEECCCCcCCCChh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-c
Confidence 78888888888765 8999999999999998655 3 4688999999999999976553 56889999999999999 6
Q ss_pred ccccchhhcCCCCCCEEEecCCCCCCC-----CCCcCeEEecCccCCC
Q 005085 507 IKELPSSIENLEGLKQLKLTGCTKLGS-----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 507 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~-----lp~L~~L~l~~n~L~~ 549 (715)
+..++. +..+++|++|+|++|.+... +++|+.|++++|+++.
T Consensus 168 l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 ISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred cccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 777765 88999999999999987654 7899999999999776
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.8e-15 Score=146.46 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=70.0
Q ss_pred EEeccCCCCcc-cCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 427 ELNLMCTPIEE-VPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 427 ~L~L~~n~l~~-lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+|++++|.++. .|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+.+| .+..+++|+.|++++|
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n- 169 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD- 169 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-
Confidence 33333333442 34456677788888888887777677777888888888888886556666 5777888888888888
Q ss_pred cccccchhhcCCCCCCEEEecCCCCC
Q 005085 506 NIKELPSSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 506 ~~~~lp~~l~~l~~L~~L~Ls~n~~~ 531 (715)
.+..++ .+..+++|++|++++|++.
T Consensus 170 ~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCcChH-HhccCCCCCEEEeeCcccC
Confidence 566665 5777777888887777653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.3e-15 Score=147.39 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=60.4
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
.+|++|++++|.++.+| ++..+++|++|++++| ....++.+..+++|++|++++|......|..++.+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 45666666677777766 6777777777777777 444555677777777777777755555566666677777777776
Q ss_pred cccccccCcccCCCccc
Q 005085 389 CESLRCFPQNIHFISSI 405 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L 405 (715)
|......|..+..+++|
T Consensus 122 n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKV 138 (197)
T ss_dssp SBCBGGGHHHHTTCSSC
T ss_pred CccCcHhHHHHhhCCCC
Confidence 64443334334333333
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=9.9e-18 Score=188.47 Aligned_cols=186 Identities=17% Similarity=0.166 Sum_probs=130.8
Q ss_pred CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcc-------------cccccCcccCCCcccE-EEcCCCCCCC
Q 005085 351 PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCE-------------SLRCFPQNIHFISSIK-IDCYKCVNLK 416 (715)
Q Consensus 351 ~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~-------------~~~~lp~~~~~l~~L~-L~l~~~~~l~ 416 (715)
+...++|+.|+|++| .+..+|..++++++|+.|++++|. .....|..++.+++|+ |+...++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 356677777777776 456777778888888888776653 2334455556666666 5521212111
Q ss_pred cCCC-----------CCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCc
Q 005085 417 EFPR-----------ISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLES 485 (715)
Q Consensus 417 ~l~~-----------~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~ 485 (715)
.++. ....|+.|+|++|.++.+|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 1110 11247788888888888886 888888888888888755 778888888888888888886654
Q ss_pred cchhccCCccccccccccccccccc--chhhcCCCCCCEEEecCCCCCCC----------CCCcCeEEe
Q 005085 486 FPEILEKMELLEEINLEEASNIKEL--PSSIENLEGLKQLKLTGCTKLGS----------LPETKNWMH 542 (715)
Q Consensus 486 ~p~~~~~l~~L~~L~L~~n~~~~~l--p~~l~~l~~L~~L~Ls~n~~~~~----------lp~L~~L~l 542 (715)
+| .++.+++|+.|+|++| .+..+ |..++.+++|+.|+|++|++.+. +|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 67 6888888888888888 55555 78888888888888888877553 566666653
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=2.3e-15 Score=170.21 Aligned_cols=185 Identities=13% Similarity=0.127 Sum_probs=127.7
Q ss_pred hcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcce
Q 005085 279 FTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLE 358 (715)
Q Consensus 279 ~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~ 358 (715)
+..+.+|+.|++..+. +..++ .+..+.+|+.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD---IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC---CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC---CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCC
Confidence 3456777777776322 22333 24455778888888887777665 7777888888888774 34566777778888
Q ss_pred EEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCccc
Q 005085 359 RMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEV 438 (715)
Q Consensus 359 ~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~l 438 (715)
+|+|++|... .+ ..+..+++|+.|+|++|.. ..+ ..+..++ +|+.|+|++|.+..+
T Consensus 113 ~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~--------------------~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 113 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLT--------------------KLDTLSLEDNQISDI 168 (605)
T ss_dssp EEECTTSCCC-CC-GGGGGCTTCSEEECCSSCC-CCC-GGGGSCT--------------------TCSEEECCSSCCCCC
T ss_pred EEEecCCCCC-CC-ccccCCCccCEEECCCCcc-CCc-hhhcccC--------------------CCCEEECcCCcCCCc
Confidence 8888777433 33 4577777788888877743 222 2233333 456888999999888
Q ss_pred CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccc
Q 005085 439 PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELL 496 (715)
Q Consensus 439 p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 496 (715)
+. +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.......+..+..+
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~ 223 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred hh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence 76 8999999999999998665 44 58999999999999998765433333333333
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.5e-14 Score=143.54 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=112.9
Q ss_pred ccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccC-chhhcccccceEeccC
Q 005085 311 SYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAG 388 (715)
Q Consensus 311 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~ 388 (715)
...++.+++.+..+|.++. ++|++|+|++|.+....|. +..+++|++|+|++|.. ..+| ..+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 4567888888888887765 8899999999876665555 78889999999998854 4555 5568888899999888
Q ss_pred cccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccC
Q 005085 389 CESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
|......+..+..+++|+ +|+|++|.++.+|..+..+++|++|++++|.+.+..+..+..
T Consensus 98 N~l~~l~~~~~~~l~~L~--------------------~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLK--------------------ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp SCCCCCCTTTTTTCTTCC--------------------EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCccChhHhCcchhhC--------------------eEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 854333333344455444 777777888888888888888888888888766555566778
Q ss_pred CCCccEeecCCCcCCCc
Q 005085 469 LKYLSSLDLSYCINLES 485 (715)
Q Consensus 469 l~~L~~L~L~~n~~~~~ 485 (715)
+++|+.|++++|.....
T Consensus 158 l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECTTSCBCTT
T ss_pred CCCCCEEEeeCCCccCC
Confidence 88888888888866543
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=142.51 Aligned_cols=150 Identities=16% Similarity=0.056 Sum_probs=94.2
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+.++++++.++.+|..+. ..+++|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467788888888877653 4567888888865444343 667777888888777544444456777777777777777
Q ss_pred ccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccccC
Q 005085 390 ESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
......|..+..+++|+ +|+|++|.++.+ |..+..+++|++|+|++|.+.+..|..+..
T Consensus 92 ~l~~~~~~~~~~l~~L~--------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 92 RLENVQHKMFKGLESLK--------------------TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp CCCCCCGGGGTTCSSCC--------------------EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred ccCccCHhHhcCCcCCC--------------------EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 54333333344444443 555555666555 344666666666666666665555666666
Q ss_pred CCCccEeecCCCcCC
Q 005085 469 LKYLSSLDLSYCINL 483 (715)
Q Consensus 469 l~~L~~L~L~~n~~~ 483 (715)
+++|++|++++|...
T Consensus 152 l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 152 LHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTCCEEECCSCCEE
T ss_pred CCCCCEEEecCcCCc
Confidence 666666666666544
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.3e-17 Score=187.46 Aligned_cols=202 Identities=17% Similarity=0.145 Sum_probs=140.5
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEe-cc
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMI-MA 387 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~-L~ 387 (715)
++|+.|+|++|.++.+|..++++++|+.|++++|......|. .+..+...+..|..++.+++|+.|+ ++
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcchh
Confidence 677788888888888888888888888888765521111110 0011123344555666666666666 33
Q ss_pred CcccccccCc------ccCC--CcccE-EEcCCCCCCCcCCCC--CCCCcEEeccCCCCcccCcccCCCCCCCEEEcccc
Q 005085 388 GCESLRCFPQ------NIHF--ISSIK-IDCYKCVNLKEFPRI--SGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFC 456 (715)
Q Consensus 388 ~~~~~~~lp~------~~~~--l~~L~-L~l~~~~~l~~l~~~--~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 456 (715)
.| ....++. .+.. ...|+ |++++| .++.+|.. +.+|+.|+|++|.++.+|..++.+++|+.|+|++|
T Consensus 419 ~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 419 AA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hc-ccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 33 1111111 0000 12366 777774 45556652 23678999999999999999999999999999999
Q ss_pred cccccccccccCCCCccEeecCCCcCCCcc-chhccCCcccccccccccccccccchh----hcCCCCCCEEEe
Q 005085 457 YSLKRLSTSICKLKYLSSLDLSYCINLESF-PEILEKMELLEEINLEEASNIKELPSS----IENLEGLKQLKL 525 (715)
Q Consensus 457 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~lp~~----l~~l~~L~~L~L 525 (715)
.+.+ +| .++.+++|++|+|++|.+.+.. |..++.+++|+.|+|++| .+..+|+. +..+++|+.|++
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 8765 77 8999999999999999877766 899999999999999999 56555543 345899999975
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=153.22 Aligned_cols=171 Identities=16% Similarity=0.011 Sum_probs=83.4
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CC-CCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PS-ETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~-~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+.++++++.++.+|..+. ..++.|+|++|.+....+. +. .+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666666543 3466677776644333333 44 6666666666666443333345666666666666666
Q ss_pred ccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccc--
Q 005085 390 ESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSI-- 466 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~-- 466 (715)
......+..+..+++|+ +|+|++|.+..+ |..+..+++|++|+|++|.+....+..+
T Consensus 99 ~l~~~~~~~~~~l~~L~--------------------~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 158 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALE--------------------VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158 (361)
T ss_dssp CCCEECTTTTTTCTTCC--------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-
T ss_pred cCCcCCHHHhCCCcCCC--------------------EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC
Confidence 43222222333333333 444444444444 2334555555555555554333222222
Q ss_pred -cCCCCccEeecCCCcCCCccchhccCCcc--ccccccccc
Q 005085 467 -CKLKYLSSLDLSYCINLESFPEILEKMEL--LEEINLEEA 504 (715)
Q Consensus 467 -~~l~~L~~L~L~~n~~~~~~p~~~~~l~~--L~~L~L~~n 504 (715)
..+++|+.|+|++|.+....+..+..++. |+.|+|++|
T Consensus 159 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp ---CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 33555555555555433322233444443 244555544
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2.8e-14 Score=140.52 Aligned_cols=148 Identities=17% Similarity=0.150 Sum_probs=91.1
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccC-CCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcc
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIP-EPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCE 390 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~ 390 (715)
+.++.+++.++.+|..+. ++|+.|+|++|.+....+ .+..+++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777888888887654 678888888885544333 27777888888888876555556777777777777777764
Q ss_pred cccccCcc-cCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccC-cccCCCCCCCEEEcccccccccccccccC
Q 005085 391 SLRCFPQN-IHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVP-LSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 391 ~~~~lp~~-~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
+..+|.. +..+++|+ +|+|++|.++.++ ..+..+++|++|+|++|.+.+..+..+..
T Consensus 92 -l~~l~~~~f~~l~~L~--------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQ--------------------LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp -CCCCCTTTTTTCTTCC--------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -CCccCHhHccCCCCCC--------------------EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 3333332 23333333 5555555555443 33555666666666666555544445555
Q ss_pred CCCccEeecCCCcC
Q 005085 469 LKYLSSLDLSYCIN 482 (715)
Q Consensus 469 l~~L~~L~L~~n~~ 482 (715)
+++|++|++++|..
T Consensus 151 l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 151 LRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CCCCCEEEeCCCCc
Confidence 66666666666543
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=1.7e-16 Score=180.83 Aligned_cols=268 Identities=15% Similarity=0.146 Sum_probs=163.1
Q ss_pred CCCCccEEEEeecC-ccccccCCccccccccccEEEecCC-CcccccccCCCCCCccEEeecCCCC--------------
Q 005085 281 NMSNVRLLKFYISG-HFDVSKMSSKVHLQQESYRTQLSFK-KVEQIWEGQKKAPKLKYVDLNHSTN-------------- 344 (715)
Q Consensus 281 ~l~~L~~L~l~~n~-~~~~~~l~~~l~~~~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~n~~-------------- 344 (715)
.+++|+.|+++.+. .++...++......++|++|++++| .+..+|..+..+++|+.|+++.+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 45566666665322 1111112222222356666666665 3444555555556666665443310
Q ss_pred -----C-----------cccCC-CCCCCcceEEEEecCCCCcc-cCchhhcccccceEeccCcccccccCcccCCCcccE
Q 005085 345 -----L-----------TRIPE-PSETPNLERMNLRNCTGLAH-IPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK 406 (715)
Q Consensus 345 -----~-----------~~~p~-~~~l~~L~~L~L~~n~~l~~-~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 406 (715)
+ ..++. +..+++|++|+|++|..... ++..+..+++|+.|++++|.....++.....+++|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 0 11222 12567888888888863222 223356788888888888722222333233477788
Q ss_pred -EEcCC--------CCCCCc-----CCCCCCCCcEEeccCCCCccc-Cccc-CCCCCCCEEEcc-----cccccc-----
Q 005085 407 -IDCYK--------CVNLKE-----FPRISGNVVELNLMCTPIEEV-PLSI-ECLPNLEILEMS-----FCYSLK----- 460 (715)
Q Consensus 407 -L~l~~--------~~~l~~-----l~~~~~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~L~-----~n~~~~----- 460 (715)
|++.+ |..++. +.....+|++|.+.++.++.. +..+ ..+++|+.|+++ +|...+
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 87743 444432 122357899999988888742 2223 368999999999 333333
Q ss_pred -cccccccCCCCccEeecCCCcCCCccchhccC-Ccccccccccccccccccchhh-cCCCCCCEEEecCCCCCCC----
Q 005085 461 -RLSTSICKLKYLSSLDLSYCINLESFPEILEK-MELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGS---- 533 (715)
Q Consensus 461 -~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~Ls~n~~~~~---- 533 (715)
.++..+..+++|+.|++++ .+....+..+.. +++|+.|+|++|......+..+ ..+++|++|+|++|++...
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 2233367789999999987 444444444544 8899999999995333333333 6799999999999998432
Q ss_pred ----CCCcCeEEecCccCCC
Q 005085 534 ----LPETKNWMHPYCKHYP 549 (715)
Q Consensus 534 ----lp~L~~L~l~~n~L~~ 549 (715)
+|+|+.|++++|+++.
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBH
T ss_pred HHHhCCCCCEEeeeCCCCCH
Confidence 7899999999998754
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4.7e-15 Score=150.36 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=103.1
Q ss_pred ccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccC
Q 005085 309 QESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAG 388 (715)
Q Consensus 309 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~ 388 (715)
.++..++++++.++.++ .+..+++|++|++++|. +..++.+..+++|++|+|++|. +..+|. +..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 45666777888888776 56778888888888884 4566677788888888888874 444444 77778888888877
Q ss_pred cccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccC
Q 005085 389 CESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 389 ~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
|. +..+|. +. . .+|++|++++|.++.++ .+..+++|+.|++++|.+.+ ++ .+..
T Consensus 95 N~-l~~l~~-~~-------------------~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~ 148 (263)
T 1xeu_A 95 NR-LKNLNG-IP-------------------S--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGF 148 (263)
T ss_dssp SC-CSCCTT-CC-------------------C--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGG
T ss_pred Cc-cCCcCc-cc-------------------c--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHcc
Confidence 73 222332 11 0 34456666666666654 36666666666666666433 23 4556
Q ss_pred CCCccEeecCCCcCCCccchhccCCccccccccccc
Q 005085 469 LKYLSSLDLSYCINLESFPEILEKMELLEEINLEEA 504 (715)
Q Consensus 469 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 504 (715)
+++|+.|++++|.+.+. ..+..+++|+.|++++|
T Consensus 149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 66666666666654333 33455555555555555
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=3.8e-14 Score=139.56 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=54.5
Q ss_pred EEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 427 ELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 427 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+|+|++|.++.++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..|..+..+++|+.|+|++|
T Consensus 61 ~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N- 139 (220)
T 2v70_A 61 KINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN- 139 (220)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-
T ss_pred EEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-
Confidence 33444444444433 3555555666666665555554555555666666666666555555555555666666666665
Q ss_pred ccccc-chhhcCCCCCCEEEecCCCC
Q 005085 506 NIKEL-PSSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 506 ~~~~l-p~~l~~l~~L~~L~Ls~n~~ 530 (715)
.+..+ |..+..+++|+.|+|++|++
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 33333 44555555555555555443
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=7.1e-14 Score=138.56 Aligned_cols=126 Identities=21% Similarity=0.098 Sum_probs=89.8
Q ss_pred CCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 423 GNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.+|++|+|++|.++.+ |..+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4566777777877766 445777888888888887765444455677888888888887666555556677788888888
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
++| .+..+|..+..+++|++|+|++|.+... +++|+.|++++|++..
T Consensus 120 s~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 887 6667777777777777777777766543 5567777777776553
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4.1e-14 Score=139.33 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=53.8
Q ss_pred EEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 427 ELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 427 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
.|++++|.++.+|. .+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|+.|+|++|.
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 44444444444433 24444444444444444444444444444444444444443332222233444444444444442
Q ss_pred cccccchhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCC
Q 005085 506 NIKELPSSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHY 548 (715)
Q Consensus 506 ~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~ 548 (715)
.....|..+..+++|++|+|++|.+... +++|+.|++++|++.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 2222233444444444444444444322 445555555555543
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=6.4e-15 Score=149.36 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcC
Q 005085 331 APKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCY 410 (715)
Q Consensus 331 l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~ 410 (715)
+.++..++++++. ...++.+..+++|++|++++| .+..+| .+..+++|+.|++++|. +..+|. +..+++|+
T Consensus 18 l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~---- 88 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLE---- 88 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCC----
T ss_pred HHHHHHHHhcCCC-cccccchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCC----
Confidence 4455555666653 334444555666666666665 333444 45556666666666553 222332 33333332
Q ss_pred CCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhc
Q 005085 411 KCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEIL 490 (715)
Q Consensus 411 ~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~ 490 (715)
+|++++|.++.+|... . ++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+ ++ .+
T Consensus 89 ----------------~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l 146 (263)
T 1xeu_A 89 ----------------ELSVNRNRLKNLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-ML 146 (263)
T ss_dssp ----------------EEECCSSCCSCCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GG
T ss_pred ----------------EEECCCCccCCcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HH
Confidence 4555555555544322 2 555555555554333 22 34555555555555554322 22 34
Q ss_pred cCCcccccccccccccccccchhhcCCCCCCEEEecCC
Q 005085 491 EKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGC 528 (715)
Q Consensus 491 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~Ls~n 528 (715)
+.+++|+.|++++| .+..+ ..+..+++|+.|++++|
T Consensus 147 ~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 147 GFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred ccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 44555555555555 33333 23334444444444433
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=4.4e-14 Score=150.31 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=90.5
Q ss_pred cEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhh-cccccceEeccCcccccccCcccCCCcccEEEcCCC
Q 005085 335 KYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQ-NFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKC 412 (715)
Q Consensus 335 ~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~ 412 (715)
+.++++++ .+..+|. +. +.+++|+|++|......+..+. .+++|+.|+|++|......|..+..+++|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------ 91 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR------ 91 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC------
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC------
Confidence 46666665 3344553 22 3466677776643333333344 666666666666643322223344444333
Q ss_pred CCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhc-
Q 005085 413 VNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEIL- 490 (715)
Q Consensus 413 ~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~- 490 (715)
+|+|++|.++.+|.. +..+++|++|+|++|.+....|..|.++++|+.|+|++|.+....+..+
T Consensus 92 --------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 92 --------------YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp --------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred --------------EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 555555666655543 5566666666666666555555566666666666666664433222222
Q ss_pred --cCCcccccccccccccccccc-hhhcCCCC--CCEEEecCCCCCC
Q 005085 491 --EKMELLEEINLEEASNIKELP-SSIENLEG--LKQLKLTGCTKLG 532 (715)
Q Consensus 491 --~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~--L~~L~Ls~n~~~~ 532 (715)
..+++|+.|+|++| .+..+| ..+..++. |+.|+|++|++..
T Consensus 158 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 44566666666666 444444 23444444 2455555555443
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=9.3e-15 Score=169.40 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=84.5
Q ss_pred CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEec
Q 005085 351 PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNL 430 (715)
Q Consensus 351 ~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L 430 (715)
+..+++|++|+|++|. +..+|..+..+++|++|+|++|. +..+|..++.+++|+ +|+|
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~--------------------~L~L 277 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLR--------------------VLDL 277 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCC--------------------EEEC
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCC--------------------EEeC
Confidence 6666777777777764 34666666677777777777764 336666665555554 5666
Q ss_pred cCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcc-cccccccccccccc
Q 005085 431 MCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMEL-LEEINLEEASNIKE 509 (715)
Q Consensus 431 ~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~~~~ 509 (715)
++|.|+.+|..++.+++|++|+|++|.+ +.+|..|+.+++|++|+|++|.+.+.+|..+..+.. +..|+|++|...+.
T Consensus 278 s~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 278 SHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp TTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred cCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 6666666666666667777777766654 356666666777777777777666666655544321 22355666644444
Q ss_pred cch
Q 005085 510 LPS 512 (715)
Q Consensus 510 lp~ 512 (715)
+|.
T Consensus 357 ~p~ 359 (727)
T 4b8c_D 357 LPH 359 (727)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=5.7e-14 Score=132.01 Aligned_cols=130 Identities=22% Similarity=0.211 Sum_probs=107.3
Q ss_pred CCCCcEEeccCCCCc--ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccc
Q 005085 422 SGNVVELNLMCTPIE--EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEI 499 (715)
Q Consensus 422 ~~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 499 (715)
+.++++|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356778899999888 8888888899999999999886554 678889999999999998777788878889999999
Q ss_pred cccccccccccc--hhhcCCCCCCEEEecCCCCCCC----------CCCcCeEEecCccCCCCCCCCCC
Q 005085 500 NLEEASNIKELP--SSIENLEGLKQLKLTGCTKLGS----------LPETKNWMHPYCKHYPITRVKDY 556 (715)
Q Consensus 500 ~L~~n~~~~~lp--~~l~~l~~L~~L~Ls~n~~~~~----------lp~L~~L~l~~n~L~~~~lp~~l 556 (715)
++++| .++.+| ..+..+++|++|++++|++... +|+|++|++++|.+++ +|.+.
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~ 166 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE--APDSD 166 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB--CCSSS
T ss_pred eccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh--ccccc
Confidence 99998 677765 6788899999999999876543 6789999999998877 77653
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.6e-14 Score=167.33 Aligned_cols=191 Identities=13% Similarity=0.065 Sum_probs=113.2
Q ss_pred ccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 311 SYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 311 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
+..++++.|.+...+..+..+++|+.|+|++|.+. .+|. +..+++|++|+|++|.. ..+|..+++|++|++|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCC
Confidence 34445556666666777888999999999999654 6664 77899999999999854 488999999999999999998
Q ss_pred ccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCC
Q 005085 390 ESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKL 469 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l 469 (715)
. +..+|..++.+++|+ +|+|++|.++.+|..|+.+++|++|+|++|.+.+.+|..+..+
T Consensus 281 ~-l~~lp~~~~~l~~L~--------------------~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 281 R-LTSLPAELGSCFQLK--------------------YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp C-CSSCCSSGGGGTTCS--------------------EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred c-CCccChhhcCCCCCC--------------------EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 5 447888777666665 8888888899999999999999999999999988888877654
Q ss_pred CC-ccEeecCCCcCCCccchhccCCcccccccccccc----cccccc----hhhcCCCCCCEEEecCCCC
Q 005085 470 KY-LSSLDLSYCINLESFPEILEKMELLEEINLEEAS----NIKELP----SSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 470 ~~-L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~----~~~~lp----~~l~~l~~L~~L~Ls~n~~ 530 (715)
.. +..|++++|...+.+|.. |+.|+++.|. ..+.++ ..+..+..+....++.|-+
T Consensus 340 ~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHHHHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred chhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 32 234788898887777753 4555666551 122222 2234445555556666654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4.4e-13 Score=125.85 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=62.0
Q ss_pred ccccEEEecCCCcc--cccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEec
Q 005085 309 QESYRTQLSFKKVE--QIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIM 386 (715)
Q Consensus 309 ~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L 386 (715)
.+|++|++++|.+. .+|..+..+++|++|++++|.+. .++.+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-ChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 56788888888887 78777788888888888888644 3466888888888888888665556777777788888888
Q ss_pred cCcc
Q 005085 387 AGCE 390 (715)
Q Consensus 387 ~~~~ 390 (715)
++|.
T Consensus 103 s~N~ 106 (168)
T 2ell_A 103 SGNK 106 (168)
T ss_dssp BSSS
T ss_pred cCCc
Confidence 7773
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=4.5e-13 Score=123.05 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=80.4
Q ss_pred CCCcEEeccCCCCc--ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccc
Q 005085 423 GNVVELNLMCTPIE--EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEIN 500 (715)
Q Consensus 423 ~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 500 (715)
.+++.|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45667777777776 6777677777777777777765544 5567777777777777766665676666677777777
Q ss_pred ccccccccccc--hhhcCCCCCCEEEecCCCCCCC----------CCCcCeEEec
Q 005085 501 LEEASNIKELP--SSIENLEGLKQLKLTGCTKLGS----------LPETKNWMHP 543 (715)
Q Consensus 501 L~~n~~~~~lp--~~l~~l~~L~~L~Ls~n~~~~~----------lp~L~~L~l~ 543 (715)
+++| .++.+| ..+..+++|++|++++|++.+. +|+|+.|+++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777 455543 5667777777777777765432 4566666654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=5.9e-13 Score=122.29 Aligned_cols=128 Identities=18% Similarity=0.123 Sum_probs=92.1
Q ss_pred ccccceEeccCcccc-cccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcccCCCCCCCEEEcccc
Q 005085 378 FNKLGNMIMAGCESL-RCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSIECLPNLEILEMSFC 456 (715)
Q Consensus 378 l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 456 (715)
.++|+.|++++|... ..+|..+..+++|+ +|++++|.++.+ ..++.+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~--------------------~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELE--------------------FLSTINVGLTSI-ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCC--------------------EEECTTSCCCCC-TTCCCCTTCCEEECCSS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCc--------------------EEECcCCCCCCc-hhhhcCCCCCEEECCCC
Confidence 356666777666433 25555444444444 566666666666 55778888899999888
Q ss_pred cccccccccccCCCCccEeecCCCcCCCc-cchhccCCcccccccccccccccccch----hhcCCCCCCEEEecC
Q 005085 457 YSLKRLSTSICKLKYLSSLDLSYCINLES-FPEILEKMELLEEINLEEASNIKELPS----SIENLEGLKQLKLTG 527 (715)
Q Consensus 457 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~Ls~ 527 (715)
.+.+.+|..+..+++|++|++++|.+.+. .+..++.+++|++|++++| .+..+|. .+..+++|+.|++++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 87777887777888999999998876542 3467888889999999988 5666654 678889999998764
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.5e-12 Score=125.15 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCcEEeccCCCCcccCcc--cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 424 NVVELNLMCTPIEEVPLS--IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 424 ~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
++++|++++|.++.++.. ++.+++|++|++++|.+.+..|..+.++++|++|+|++|.+.+..+..+..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455666777777666653 666777777777777666666666777777777777777665555555666777777777
Q ss_pred cccccccccchhhcCCCCCCEEEecCCCCCCC
Q 005085 502 EEASNIKELPSSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 502 ~~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
++|...+..|..+..+++|++|+|++|++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77633334455566666666666666655443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=124.13 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCCcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccc
Q 005085 423 GNVVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLE 502 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 502 (715)
.++++|++++|.++.+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..|..+..+++|+.|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35567777777777777667777777777777777666666667777777777777776665555667777777777777
Q ss_pred ccccccccch-hhcCCCCCCEEEecCCCC
Q 005085 503 EASNIKELPS-SIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 503 ~n~~~~~lp~-~l~~l~~L~~L~Ls~n~~ 530 (715)
+| .+..+|. .+..+++|+.|+|++|++
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 77 5555554 345555555555555543
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=4.2e-12 Score=122.01 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=78.7
Q ss_pred cEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 312 YRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 312 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
++++++++.++.+|..+.. +|++|++++|.+....+. +..+++|++|+|++|...+..|..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777766543 777777777754433332 556666666666666544444555556666666665555
Q ss_pred ccccccCcccCCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccC
Q 005085 390 ESLRCFPQNIHFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICK 468 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~ 468 (715)
.++.++.. +..+++|++|++++|.+.+..|..+..
T Consensus 89 --------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 89 --------------------------------------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp --------------------------------------------CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred --------------------------------------------cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 33333322 556666666666666666666666666
Q ss_pred CCCccEeecCCCcCCCcc
Q 005085 469 LKYLSSLDLSYCINLESF 486 (715)
Q Consensus 469 l~~L~~L~L~~n~~~~~~ 486 (715)
+++|++|++++|......
T Consensus 125 l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CTTCCEEECTTCCBCCSG
T ss_pred CCCCCEEEeCCCCccCcC
Confidence 667777777766655443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=5.8e-12 Score=121.08 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred cEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 426 VELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 426 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+.++++++.++++|..+. ++|++|++++|.+. .+|..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 578999999999998654 69999999999864 77889999999999999999888777788999999999999999
Q ss_pred cccccc-hhhcCCCCCCEEEecCCCCCCC-------CCCcCeEEecCccCCC
Q 005085 506 NIKELP-SSIENLEGLKQLKLTGCTKLGS-------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 506 ~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~-------lp~L~~L~l~~n~L~~ 549 (715)
.+..++ ..+..+++|++|+|++|.+... +++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 555554 4688899999999999887543 5678888888887653
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.3e-12 Score=120.86 Aligned_cols=102 Identities=18% Similarity=0.087 Sum_probs=48.2
Q ss_pred cEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 426 VELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 426 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+.|++++|.++.+|......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N- 98 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN- 98 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-
Confidence 355555555554433222222555555555554332 34555555555555555433222222355555555555555
Q ss_pred cccccch--hhcCCCCCCEEEecCCCC
Q 005085 506 NIKELPS--SIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 506 ~~~~lp~--~l~~l~~L~~L~Ls~n~~ 530 (715)
.++.+|. .+..+++|+.|++++|++
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 4444444 444555555555555443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=4e-12 Score=120.30 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=43.3
Q ss_pred EEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccch--hccCCccccccccccc
Q 005085 427 ELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPE--ILEKMELLEEINLEEA 504 (715)
Q Consensus 427 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n 504 (715)
+|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+ +.+|. .+..+++|+.|++++|
T Consensus 46 ~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 46 AIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSS
T ss_pred EEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCC
Confidence 333333333333 2344444455555554443322222224445555555555433 33333 3444555555555555
Q ss_pred ccccccchh----hcCCCCCCEEEecCC
Q 005085 505 SNIKELPSS----IENLEGLKQLKLTGC 528 (715)
Q Consensus 505 ~~~~~lp~~----l~~l~~L~~L~Ls~n 528 (715)
.+..+|.. +..+++|+.|++++|
T Consensus 124 -~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 124 -PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 33344432 444444444444444
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.1e-11 Score=115.32 Aligned_cols=102 Identities=23% Similarity=0.223 Sum_probs=52.7
Q ss_pred cEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 426 VELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 426 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+.+++++++++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N- 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN- 86 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-
Confidence 35555555555555433 245666666665544444444555566666666665544333344455556666666655
Q ss_pred cccccch-hhcCCCCCCEEEecCCCC
Q 005085 506 NIKELPS-SIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 506 ~~~~lp~-~l~~l~~L~~L~Ls~n~~ 530 (715)
.++.+|. .+..+++|++|++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcc
Confidence 3333333 234455555555555443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=9.6e-12 Score=117.74 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=97.1
Q ss_pred CCCcEEeccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 423 GNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.++++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4678999999999988765 689999999999999977666667899999999999999877666667899999999999
Q ss_pred cccccccccchh-hcCCCCCCEEEecCCCCCCCCCCcCe
Q 005085 502 EEASNIKELPSS-IENLEGLKQLKLTGCTKLGSLPETKN 539 (715)
Q Consensus 502 ~~n~~~~~lp~~-l~~l~~L~~L~Ls~n~~~~~lp~L~~ 539 (715)
++| .++.+|.. +..+++|++|+|++|++...+|.++.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCeeccCccHHH
Confidence 999 66677765 47789999999999988777554433
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=2.4e-11 Score=127.40 Aligned_cols=189 Identities=13% Similarity=0.027 Sum_probs=106.1
Q ss_pred CCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCccc---ccc-cCcccCCCcc
Q 005085 331 APKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCES---LRC-FPQNIHFISS 404 (715)
Q Consensus 331 l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~---~~~-lp~~~~~l~~ 404 (715)
+++|+.|+|.+ .+..++. |.++++|+.|++++|.....-+..|..+.++..+.+..... ... -+..+..+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888887 3445554 78888888888888755444446666666666666544211 001 1112233444
Q ss_pred cE--EEcCCCCCCCc----------------------------CCCCCCCCcEEeccCCCCcccCcc-cCCCCCCCEEEc
Q 005085 405 IK--IDCYKCVNLKE----------------------------FPRISGNVVELNLMCTPIEEVPLS-IECLPNLEILEM 453 (715)
Q Consensus 405 L~--L~l~~~~~l~~----------------------------l~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L 453 (715)
|+ +.+.....+.. +.....+|+.|+|++|+++.+|.. |.++++|+.|++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 44 33322211110 001134666777777667766654 666777777777
Q ss_pred ccccccccccccccCCCCcc-EeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEE
Q 005085 454 SFCYSLKRLSTSICKLKYLS-SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLK 524 (715)
Q Consensus 454 ~~n~~~~~lp~~~~~l~~L~-~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~ 524 (715)
.+| +...-+..|.++++|+ .+++.+ .....-+..|..+++|+.|++++| .+..++. .|.++++|+.|.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 665 3333344566677776 777765 233333355666777777776666 5555544 456666666654
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=1.9e-11 Score=114.92 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=90.2
Q ss_pred CcEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccccc
Q 005085 425 VVELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEA 504 (715)
Q Consensus 425 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 504 (715)
.+.+++++|.++.+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4689999999999998763 89999999999988888888999999999999999877666667889999999999999
Q ss_pred ccccccch-hhcCCCCCCEEEecCCCCCCCCC
Q 005085 505 SNIKELPS-SIENLEGLKQLKLTGCTKLGSLP 535 (715)
Q Consensus 505 ~~~~~lp~-~l~~l~~L~~L~Ls~n~~~~~lp 535 (715)
.+..+|. .+..+++|++|+|++|++...++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 6666665 47788888888888877665433
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=2.6e-11 Score=114.37 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=85.3
Q ss_pred cEEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccc
Q 005085 426 VELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEAS 505 (715)
Q Consensus 426 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 505 (715)
+.+++++|.++++|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..+..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 589999999999998764 89999999999988888888999999999999999766655556788999999999999
Q ss_pred cccccchh-hcCCCCCCEEEecCCCCCC
Q 005085 506 NIKELPSS-IENLEGLKQLKLTGCTKLG 532 (715)
Q Consensus 506 ~~~~lp~~-l~~l~~L~~L~Ls~n~~~~ 532 (715)
.+..+|.. +..+++|++|+|++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 67777764 6777777777777666543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=3.1e-13 Score=130.71 Aligned_cols=99 Identities=22% Similarity=0.269 Sum_probs=46.8
Q ss_pred EEeccCCCCcccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccccccc
Q 005085 427 ELNLMCTPIEEVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASN 506 (715)
Q Consensus 427 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 506 (715)
+|++++|.++.+| .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++| .
T Consensus 52 ~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N-~ 126 (198)
T 1ds9_A 52 HLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNN-K 126 (198)
T ss_dssp EEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEE-E
T ss_pred EEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCC-c
Confidence 4444444444444 3444555555555555432 344444444555555555553322 33 3445555555555555 3
Q ss_pred ccccch--hhcCCCCCCEEEecCCCC
Q 005085 507 IKELPS--SIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 507 ~~~lp~--~l~~l~~L~~L~Ls~n~~ 530 (715)
+..++. .+..+++|++|++++|++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 443332 445555555555555544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=6e-13 Score=128.67 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=76.9
Q ss_pred CcccccccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhhcccccceEeccCcccccccCccc
Q 005085 320 KVEQIWEGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGCESLRCFPQNI 399 (715)
Q Consensus 320 ~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~~ 399 (715)
.++.+|..+..+++|++|+|++|.+ ..+|.+..+++|++|++++|. +..+|..+..+++|+.|++++|. +..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEE-SCCCCHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCC-ccccccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 5666666777788888888888754 346667777888888888874 44677777777788888887773 33344 23
Q ss_pred CCCcccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCc--ccCCCCCCCEEEccccccccccc
Q 005085 400 HFISSIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPL--SIECLPNLEILEMSFCYSLKRLS 463 (715)
Q Consensus 400 ~~l~~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~~~~~lp 463 (715)
..+++| ++|++++|.++.+|. .+..+++|++|++++|.+.+..|
T Consensus 112 ~~l~~L--------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 112 EKLVNL--------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHS--------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ccCCCC--------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 333333 355555566655543 45666666666666666554444
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=7.5e-09 Score=110.98 Aligned_cols=205 Identities=12% Similarity=0.145 Sum_probs=101.3
Q ss_pred cccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCCCCcccCchhhcccccceEec
Q 005085 310 ESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIM 386 (715)
Q Consensus 310 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L 386 (715)
+|+.+.+..+ ++.++.. |.+ .+|+.+.+..+ +..++. |.++++|+.+++.+| .+..+|.......+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 4666666544 5555543 444 35777777642 334442 667777777777664 34455543333567777777
Q ss_pred cCcccccccC-cccCCCcccE-EEcCCCCCCCcCCCC---CCCCcEEeccCCCCcccCcc-cCCCCCCCEEEccccccc-
Q 005085 387 AGCESLRCFP-QNIHFISSIK-IDCYKCVNLKEFPRI---SGNVVELNLMCTPIEEVPLS-IECLPNLEILEMSFCYSL- 459 (715)
Q Consensus 387 ~~~~~~~~lp-~~~~~l~~L~-L~l~~~~~l~~l~~~---~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~- 459 (715)
..+ +..++ ..|.++++|+ +.+.. .++.++.. ..+|+.+.+ .+.++.++.. |.++++|+.+.+.+|...
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 643 33333 3455566666 55543 12222210 024455555 2334445332 556666666666554422
Q ss_pred ----ccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccc-hhhcCCCCCCEEEecCC
Q 005085 460 ----KRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGC 528 (715)
Q Consensus 460 ----~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~Ls~n 528 (715)
..-+..|.++++|+.++|.++ ....-...|..+++|+.+.|..+ +..++ ..+.++ +|+.|++++|
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 122334555566666665532 22222234555555555555433 33332 234444 5555555554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.7e-09 Score=110.56 Aligned_cols=189 Identities=13% Similarity=0.021 Sum_probs=119.2
Q ss_pred cccccEEEecCCCccccccc-CCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecCC---CCccc-Cchhhcccc
Q 005085 308 QQESYRTQLSFKKVEQIWEG-QKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNCT---GLAHI-PSYVQNFNK 380 (715)
Q Consensus 308 ~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~---~l~~~-p~~~~~l~~ 380 (715)
..+|+.|++.. .++.++.. |.++++|+.|++++|... .++. |..+.++..+.+.... ....+ +..+.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 58899999988 88888765 889999999999988554 4443 7777666666543310 00000 111222222
Q ss_pred c--------------------------ceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCC----CCCCCcEEe
Q 005085 381 L--------------------------GNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPR----ISGNVVELN 429 (715)
Q Consensus 381 L--------------------------~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~----~~~~L~~L~ 429 (715)
| ..+.+.++-...........+++|+ ++++++ .++.+|. ...+|+.|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEE
Confidence 2 2222222100000000001255666 666653 2555553 234677888
Q ss_pred ccCCCCcccCcc-cCCCCCCC-EEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 430 LMCTPIEEVPLS-IECLPNLE-ILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 430 L~~n~l~~lp~~-~~~l~~L~-~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
+..| ++.++.. |.++++|+ .+++.+ .+...-+..|.++++|+.|++++|.+...-+..|.++++|+.+..
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8887 8888765 88999999 999987 545555678999999999999888665555668999999998753
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=3.1e-09 Score=100.04 Aligned_cols=89 Identities=19% Similarity=0.063 Sum_probs=70.8
Q ss_pred CCCcEEeccCCCCccc-CcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccc
Q 005085 423 GNVVELNLMCTPIEEV-PLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINL 501 (715)
Q Consensus 423 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 501 (715)
.+|++|+|++|.++.+ |..+..+++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4667899999999988 456889999999999999876655556788999999999999766555556888999999999
Q ss_pred cccccccccch
Q 005085 502 EEASNIKELPS 512 (715)
Q Consensus 502 ~~n~~~~~lp~ 512 (715)
++| .+...+.
T Consensus 113 ~~N-~~~c~~~ 122 (174)
T 2r9u_A 113 YNN-PWDCECR 122 (174)
T ss_dssp CSS-CBCTTBG
T ss_pred CCC-Ccccccc
Confidence 999 5444443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.92 E-value=2.5e-09 Score=112.72 Aligned_cols=105 Identities=16% Similarity=0.048 Sum_probs=85.3
Q ss_pred EEeccCC-CCcccCcccCCCCCCCEEEccc-ccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccccc
Q 005085 427 ELNLMCT-PIEEVPLSIECLPNLEILEMSF-CYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEA 504 (715)
Q Consensus 427 ~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~-n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 504 (715)
.++.+++ .++.+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 5677777 8888998 88889999999986 7776666678889999999999999877777778889999999999998
Q ss_pred ccccccchhhcCCCCCCEEEecCCCCCCC
Q 005085 505 SNIKELPSSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 505 ~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
.+..+|..+.....|+.|+|.+|++...
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred -ccceeCHHHcccCCceEEEeeCCCccCC
Confidence 6677776554444499999999888765
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=5e-09 Score=98.17 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=64.0
Q ss_pred ccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC-CCCCCcceEEEEecCCCCcccCchhhcccccceEeccCc
Q 005085 311 SYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE-PSETPNLERMNLRNCTGLAHIPSYVQNFNKLGNMIMAGC 389 (715)
Q Consensus 311 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~L~~~ 389 (715)
.+++++++|.++.+|..+. ++|++|+|++|.+....|. +..+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4577888888888887663 7788888888866555454 778888888888887544333345678888888888887
Q ss_pred ccccccCcccCCCcccE
Q 005085 390 ESLRCFPQNIHFISSIK 406 (715)
Q Consensus 390 ~~~~~lp~~~~~l~~L~ 406 (715)
......+..+..+++|+
T Consensus 89 ~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CCCCCCTTTTTTCTTCC
T ss_pred ccCEeCHHHhcCCCCCC
Confidence 44333333455566655
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=1e-07 Score=102.16 Aligned_cols=238 Identities=12% Similarity=0.109 Sum_probs=155.4
Q ss_pred ccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccC
Q 005085 271 EINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIP 349 (715)
Q Consensus 271 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p 349 (715)
...+...+|.++ +|+.+.+..+ +..++.......+|+.+.+.. .++.++. .|.++++|+.+++.+|. +..++
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~----i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~ 196 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG----LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLP 196 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT----CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEEC
T ss_pred cCEehHhhcccC-CccEEEeCCC----ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEec
Confidence 344567788875 6888887622 222222221224688888875 6777764 47888888888888774 45555
Q ss_pred C--CCCCCcceEEEEecCCCCcccC-chhhcccccceEeccCcccccccCc-ccCCCcccE-EEcCCCCCCCcCCC----
Q 005085 350 E--PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAGCESLRCFPQ-NIHFISSIK-IDCYKCVNLKEFPR---- 420 (715)
Q Consensus 350 ~--~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~-L~l~~~~~l~~l~~---- 420 (715)
. |. ..+|+.+.|..+ +..++ ..|.++++|+.+++..+ +..++. .|.+ .+|+ +.+.. .++.++.
T Consensus 197 ~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~ 268 (401)
T 4fdw_A 197 ASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFY 268 (401)
T ss_dssp TTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTT
T ss_pred hhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhh
Confidence 4 44 578888888753 44554 56778888888888764 445544 3333 5676 66633 3444432
Q ss_pred CCCCCcEEeccCCCCc-----ccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCc
Q 005085 421 ISGNVVELNLMCTPIE-----EVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKME 494 (715)
Q Consensus 421 ~~~~L~~L~L~~n~l~-----~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 494 (715)
...+|+.+++.++.+. .++.. |.++++|+.+.+.+ .+...-...|.++++|+.++|..+ ....-+..|.++
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~- 345 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT- 345 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence 3457788888887665 56544 88999999999985 444444567889999999999765 333334578888
Q ss_pred ccccccccccccccccch-hhcCCC-CCCEEEecC
Q 005085 495 LLEEINLEEASNIKELPS-SIENLE-GLKQLKLTG 527 (715)
Q Consensus 495 ~L~~L~L~~n~~~~~lp~-~l~~l~-~L~~L~Ls~ 527 (715)
+|+.+.+.+| ....++. .+..++ +++.|.+..
T Consensus 346 ~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 346 GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 9999999998 4444433 344442 455555443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=1.4e-09 Score=115.40 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCCCCEEEcccccccc----cccccccCCCCccEeecCCCcCCC----ccchhccCCccccccccccccccc-----ccc
Q 005085 445 LPNLEILEMSFCYSLK----RLSTSICKLKYLSSLDLSYCINLE----SFPEILEKMELLEEINLEEASNIK-----ELP 511 (715)
Q Consensus 445 l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~-----~lp 511 (715)
.++|++|+|++|.+.. .++..+...++|++|+|++|.+.. .++..+...++|++|+|++| .++ .++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~ 232 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALA 232 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHH
Confidence 3455555555554322 223333445555555555554332 12333444455555555555 332 233
Q ss_pred hhhcCCCCCCEEEecCCCCC
Q 005085 512 SSIENLEGLKQLKLTGCTKL 531 (715)
Q Consensus 512 ~~l~~l~~L~~L~Ls~n~~~ 531 (715)
..+...++|++|+|++|.+.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCC
T ss_pred HHHHhCCCCCEEeccCCCCC
Confidence 33445556666666666543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=1e-09 Score=116.61 Aligned_cols=125 Identities=11% Similarity=0.080 Sum_probs=90.8
Q ss_pred CCcEEeccCCCCcc--cCcccCCCCCCCEEEcccccccccccccc-----cCCCCccEeecCCCcCCC----ccchhccC
Q 005085 424 NVVELNLMCTPIEE--VPLSIECLPNLEILEMSFCYSLKRLSTSI-----CKLKYLSSLDLSYCINLE----SFPEILEK 492 (715)
Q Consensus 424 ~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~-----~~l~~L~~L~L~~n~~~~----~~p~~~~~ 492 (715)
+|++|+|++|.++. +..-...+++|++|+|++|.+.......+ ...++|++|+|++|.+.. .++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 34466666666642 11112345678889999887654333333 356889999999997643 34555678
Q ss_pred Ccccccccccccccccc-----cchhhcCCCCCCEEEecCCCCCCC-----------CCCcCeEEecCccCCC
Q 005085 493 MELLEEINLEEASNIKE-----LPSSIENLEGLKQLKLTGCTKLGS-----------LPETKNWMHPYCKHYP 549 (715)
Q Consensus 493 l~~L~~L~L~~n~~~~~-----lp~~l~~l~~L~~L~Ls~n~~~~~-----------lp~L~~L~l~~n~L~~ 549 (715)
+++|++|+|++| .++. ++..+...++|++|+|++|.+... .++|++|+|++|.+++
T Consensus 182 ~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 182 NTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 899999999999 4543 456678889999999999998753 5899999999999876
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=8.5e-08 Score=100.93 Aligned_cols=62 Identities=18% Similarity=0.067 Sum_probs=27.3
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCccccccccccc
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEA 504 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 504 (715)
|..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+.+..+..+..++ |+.|+|.+|
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCC
Confidence 44444444444444444444444444444444444444443322222233332 444444444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=5.9e-08 Score=102.15 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCCccEeecCCCcCCCccchhc---cCCcccccccccccccccc-----cchhhcCCCCCCEEEecCCCC
Q 005085 468 KLKYLSSLDLSYCINLESFPEIL---EKMELLEEINLEEASNIKE-----LPSSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 468 ~l~~L~~L~L~~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~-----lp~~l~~l~~L~~L~Ls~n~~ 530 (715)
.+++|++|+|++|.+....+..+ ..+++|++|+|+.| .++. ++..+..+++|+.|+|++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35666666666654433222211 23556666666655 3332 333334455555555555543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=1.5e-07 Score=99.05 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=73.2
Q ss_pred ccCCCCCCccEEeecCCCCCcccCCCCCCCcceEEEEecCCCCcccCchhh--cccccceEeccCcccccccCcccCCCc
Q 005085 326 EGQKKAPKLKYVDLNHSTNLTRIPEPSETPNLERMNLRNCTGLAHIPSYVQ--NFNKLGNMIMAGCESLRCFPQNIHFIS 403 (715)
Q Consensus 326 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~--~l~~L~~L~L~~~~~~~~lp~~~~~l~ 403 (715)
..+..+|+|+.|+|++|... .++.+ .+++|++|+|..|.........+. .+++|+.|+|+.+..... ..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~------ 236 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FD------ 236 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CC------
T ss_pred HHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc-cc------
Confidence 33456788888888877322 33444 378888888887643222212333 577788887753211100 00
Q ss_pred ccEEEcCCCCCCCcCCCCCCCCcEEeccCCCCcccCccc--CCCCCCCEEEcccccccccccccc---cCCCCccEeecC
Q 005085 404 SIKIDCYKCVNLKEFPRISGNVVELNLMCTPIEEVPLSI--ECLPNLEILEMSFCYSLKRLSTSI---CKLKYLSSLDLS 478 (715)
Q Consensus 404 ~L~L~l~~~~~l~~l~~~~~~L~~L~L~~n~l~~lp~~~--~~l~~L~~L~L~~n~~~~~lp~~~---~~l~~L~~L~L~ 478 (715)
..+..+...+ ..+++|++|++.+|.+....+..+ ..+++|++|+|+
T Consensus 237 -----------------------------~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 237 -----------------------------GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp -----------------------------SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred -----------------------------hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 0000010111 235666666666665443222222 245667777777
Q ss_pred CCcCCCc----cchhccCCccccccccccc
Q 005085 479 YCINLES----FPEILEKMELLEEINLEEA 504 (715)
Q Consensus 479 ~n~~~~~----~p~~~~~l~~L~~L~L~~n 504 (715)
.|.+... ++..+.++++|+.|+|++|
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 6654332 2333445667777777776
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=1.2e-05 Score=85.85 Aligned_cols=217 Identities=10% Similarity=0.079 Sum_probs=87.4
Q ss_pred cChhhhcCCCCccEEEEeecCccccccCC-ccccccccccEEEecCCCcccccc-cCCCCCCccEEeecCCCCCcccCC-
Q 005085 274 LDPRAFTNMSNVRLLKFYISGHFDVSKMS-SKVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLNHSTNLTRIPE- 350 (715)
Q Consensus 274 l~~~~~~~l~~L~~L~l~~n~~~~~~~l~-~~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~- 350 (715)
+...+|.++.+|+.+.+..+ . ..++ ..+....+|+.+.+..+ ++.++. .+.++..|+.+.+..+. ..+.+
T Consensus 153 i~~~aF~~c~~L~~i~l~~~-~---~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~ 225 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDS-M---ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDF 225 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-C---CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTT
T ss_pred cchhhhcccCCCcEEecCCc-c---ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehh
Confidence 34456666666666665411 0 1111 11122244555555433 333332 24555555555554431 12222
Q ss_pred CCCCCcceEEEEecCCCCcccC-chhhcccccceEeccCcccccccCcccCCCcccE-EEcCCCCCCCcCCCCCCCCcEE
Q 005085 351 PSETPNLERMNLRNCTGLAHIP-SYVQNFNKLGNMIMAGCESLRCFPQNIHFISSIK-IDCYKCVNLKEFPRISGNVVEL 428 (715)
Q Consensus 351 ~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~-L~l~~~~~l~~l~~~~~~L~~L 428 (715)
.....+|+.+.+... ...++ ..+..+..|+.+.+..+ ....-...+..+..++ +...........-....+|+.+
T Consensus 226 ~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEV 302 (394)
T ss_dssp TTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEE
T ss_pred hcccCCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecccccccccccccc
Confidence 333445555555432 22222 34455566666665543 1222222334444444 3332211000011122234444
Q ss_pred eccCCCCcccCcc-cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccc
Q 005085 429 NLMCTPIEEVPLS-IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEE 503 (715)
Q Consensus 429 ~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 503 (715)
.+..+ ++.++.. |.++++|+.+++..+ +...-...|.++++|+.+++..+ ....-...|..+++|+.+.+..
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 44322 3334322 444555555555432 12222234445555555555433 1111123444555555555543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=2.6e-05 Score=83.30 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=36.3
Q ss_pred ccccChhhhcCCCCccEEEEeecCccccccCCc-cccccccccEEEecCCCcccccc-cCCCCCCccEEeec
Q 005085 271 EINLDPRAFTNMSNVRLLKFYISGHFDVSKMSS-KVHLQQESYRTQLSFKKVEQIWE-GQKKAPKLKYVDLN 340 (715)
Q Consensus 271 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~-~l~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~ 340 (715)
+..+...+|.++.+|+.+.+. +. ...++. .+....+|+.+++..+ ++.++. .+.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-ST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-TT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeC-CC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 445667788888888877775 11 112221 2233466777777543 555543 35566666655554
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.13 E-value=1.1e-05 Score=86.76 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCCCcHHHHH-HHHHHhhcc-----CCc-eEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCC-CC-cchHHHHHHhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK-----FEG-KYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIG-TQ-KIPQYIRDRLQ 71 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~-----F~~-~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-~~-~~~~~l~~~L~ 71 (715)
++|+|||||| +++++.... |+. .+|+. .... .. ...+.++++..++....... +. +....+.+.+.
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 134 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AFNA---PN-LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY 134 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GGGC---CS-HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CCCC---CC-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999 999876543 233 34554 2221 23 66788888887765422111 11 44566666765
Q ss_pred --CCeEEEEEeCcc---C----ChHHHH----Hh------C--c----------------------------CcEEEcCC
Q 005085 72 --RMKVFIVLDDVN---K----DKTILE----RY------G--T----------------------------QRIYEVEG 102 (715)
Q Consensus 72 --~kr~LlVLDDv~---r----~~~v~~----~~------~--~----------------------------~~~~~l~~ 102 (715)
+++++||+||++ . +.++.. .. + . ...+.+++
T Consensus 135 ~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~ 214 (412)
T 1w5s_A 135 VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPA 214 (412)
T ss_dssp HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCC
T ss_pred hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCC
Confidence 789999999998 2 223221 10 1 0 01278999
Q ss_pred CCHHHHHHHHHhhh---cCCCCCChhHHHHHHHHHHHhC------CCcchhHHhh
Q 005085 103 LNCNEVLRLFSSCA---FKENHCPEDLLKHSETAVHYAK------GNPLALQVLG 148 (715)
Q Consensus 103 L~~~es~~LF~~~a---f~~~~~~~~~~~~~~~i~~~c~------glPLai~~~g 148 (715)
|+.++++++|..++ +...... .+....+++.++ |.|..+..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 99999999997653 3322222 356788888999 9996555443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=2.9e-06 Score=78.55 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=56.8
Q ss_pred cCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCc-cchhccCC----ccccccccccccccccc-c
Q 005085 438 VPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLES-FPEILEKM----ELLEEINLEEASNIKEL-P 511 (715)
Q Consensus 438 lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l----~~L~~L~L~~n~~~~~l-p 511 (715)
+|.....-.+|++|++++|.+...--..+.++++|++|+|++|...+. --..+..+ ++|++|+|++|..+++- -
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 444332334677777777765544444566777777777777754332 22234443 36777777777555441 1
Q ss_pred hhhcCCCCCCEEEecCCCCCCC
Q 005085 512 SSIENLEGLKQLKLTGCTKLGS 533 (715)
Q Consensus 512 ~~l~~l~~L~~L~Ls~n~~~~~ 533 (715)
..+..+++|++|+|++|+.++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2355677777777777765554
No 157
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=1.2e-05 Score=84.41 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=39.4
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhccc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSSFY 152 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 152 (715)
..+.+.+|+.+|+.+++...+-......++. ..|++.++|.|+++..++..+.
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHc
Confidence 5789999999999999987542111112221 7899999999999999887653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=0.0001 Score=78.75 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=61.6
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc-hhccCCcccccccccccccccccch-hhcCCCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPS-SIENLEG 519 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~ 519 (715)
|..+.+|+.+.+..+. ...-...|.++++|+.+.+... ...++ ..|..+.+|+.+.|..+ ++.+.. .+.++++
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 5667778888776532 3333445667777888777542 33333 45777778888777653 444433 5667778
Q ss_pred CCEEEecCCC-CCC-----CCCCcCeEEecCcc
Q 005085 520 LKQLKLTGCT-KLG-----SLPETKNWMHPYCK 546 (715)
Q Consensus 520 L~~L~Ls~n~-~~~-----~lp~L~~L~l~~n~ 546 (715)
|+.+.|..+- ..+ .+++|+.+++.++.
T Consensus 336 L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 8888875431 111 16677777777654
No 159
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.05 E-value=3.4e-05 Score=80.71 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=40.0
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSSF 151 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 151 (715)
..+.+.+|+.+|+.+++....-......+ .+.+..+++.++|.|+++..++..+
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 37899999999999998865321111111 2467899999999999999888654
No 160
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.97 E-value=0.00017 Score=76.51 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=95.3
Q ss_pred CCCCcHHHHH-HHHHHhhcc--------CCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCC-CC-CC-cchHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQK--------FEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFD-IG-TQ-KIPQYIRD 68 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~--------F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~-~~-~~-~~~~~l~~ 68 (715)
++|+|||||| ++++.+... ....+|+. .+... .. ...+..+++..+.+.... .. .. .....+.+
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 128 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVG--GT-PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKN 128 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHHC--SC-HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccCC--CC-HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 5899999999 999876443 22344554 22221 02 566777777776433221 11 11 45677778
Q ss_pred HhcCCeEEEEEeCcc-----CChHH-HHHh----------------------------CcCcEEEcCCCCHHHHHHHHHh
Q 005085 69 RLQRMKVFIVLDDVN-----KDKTI-LERY----------------------------GTQRIYEVEGLNCNEVLRLFSS 114 (715)
Q Consensus 69 ~L~~kr~LlVLDDv~-----r~~~v-~~~~----------------------------~~~~~~~l~~L~~~es~~LF~~ 114 (715)
.++.++.+|||||++ +..++ .... .....+.+++++.++..+++..
T Consensus 129 ~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~ 208 (384)
T 2qby_B 129 GTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSK 208 (384)
T ss_dssp HHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHH
T ss_pred HhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 888777799999998 12333 2110 0023899999999999999998
Q ss_pred hh---cCCCCCChhHHHHHHHHHHHhC---CCcc-hhHHhhhcc--c-C---CChhHHHHHHHHh
Q 005085 115 CA---FKENHCPEDLLKHSETAVHYAK---GNPL-ALQVLGSSF--Y-G---KSKPDWVNALNNL 166 (715)
Q Consensus 115 ~a---f~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~L--~-~---k~~~~w~~~l~~l 166 (715)
++ |.....++ +..+.++++++ |.|- |+..+..+. + + .+.+.+..+++..
T Consensus 209 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 209 YAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 74 33233333 34566777777 8776 433332221 1 2 2667777776654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=5.5e-06 Score=76.69 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=20.8
Q ss_pred CCccEeecCCCcCCCccchhccCCccccccccccccccc
Q 005085 470 KYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIK 508 (715)
Q Consensus 470 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 508 (715)
.+|+.||+++|.+...--..+..+++|++|+|++|..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 356666666665433333334555566666666554333
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=5.1e-06 Score=78.62 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=63.0
Q ss_pred cCCCCCCCEEEcccc-cccc----cccccccCCCCccEeecCCCcCCCc----cchhccCCcccccccccccccccc---
Q 005085 442 IECLPNLEILEMSFC-YSLK----RLSTSICKLKYLSSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKE--- 509 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n-~~~~----~lp~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~--- 509 (715)
+...++|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++| .++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 455667777777776 4432 2334455566777777777754321 2333445566777777777 4433
Q ss_pred --cchhhcCCCCCCEEEe--cCCCCCCC-----------CCCcCeEEecCccCC
Q 005085 510 --LPSSIENLEGLKQLKL--TGCTKLGS-----------LPETKNWMHPYCKHY 548 (715)
Q Consensus 510 --lp~~l~~l~~L~~L~L--s~n~~~~~-----------lp~L~~L~l~~n~L~ 548 (715)
+...+...++|++|+| ++|.+... .++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4445666667777777 66665432 456777777776643
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=4.8e-06 Score=78.81 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=76.2
Q ss_pred CCCcEEeccCC-CCcc-----cCcccCCCCCCCEEEcccccccc----cccccccCCCCccEeecCCCcCCCc----cch
Q 005085 423 GNVVELNLMCT-PIEE-----VPLSIECLPNLEILEMSFCYSLK----RLSTSICKLKYLSSLDLSYCINLES----FPE 488 (715)
Q Consensus 423 ~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~~~~~----~p~ 488 (715)
.+|++|+|++| .+.. +...+...++|++|+|++|.+.. .+...+...++|++|+|++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 34567778777 6652 44456778889999999988653 2344455668899999999876542 445
Q ss_pred hccCCcccccccc--cccccccc-----cchhhcCCCCCCEEEecCCCC
Q 005085 489 ILEKMELLEEINL--EEASNIKE-----LPSSIENLEGLKQLKLTGCTK 530 (715)
Q Consensus 489 ~~~~l~~L~~L~L--~~n~~~~~-----lp~~l~~l~~L~~L~Ls~n~~ 530 (715)
.+...++|++|+| ++| .++. +...+...++|++|+|++|.+
T Consensus 116 ~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 6677788999999 777 4443 445567778999999998864
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=3.6e-06 Score=84.01 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=40.8
Q ss_pred EeccCCCCcccCcc----cCCCCCCCEEEcccccccc--cccccccCCCCccEeecCCCcCCCccchhccCCc--ccccc
Q 005085 428 LNLMCTPIEEVPLS----IECLPNLEILEMSFCYSLK--RLSTSICKLKYLSSLDLSYCINLESFPEILEKME--LLEEI 499 (715)
Q Consensus 428 L~L~~n~l~~lp~~----~~~l~~L~~L~L~~n~~~~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~--~L~~L 499 (715)
++++.|....++.. ..++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 44555544433322 1346666677776666554 3444555666666666666654432 1122222 56666
Q ss_pred ccccccccc
Q 005085 500 NLEEASNIK 508 (715)
Q Consensus 500 ~L~~n~~~~ 508 (715)
+|++|+..+
T Consensus 226 ~L~~Npl~~ 234 (267)
T 3rw6_A 226 WLDGNSLCD 234 (267)
T ss_dssp ECTTSTTGG
T ss_pred EccCCcCcc
Confidence 666654433
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=7.8e-06 Score=81.55 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCCCccEeecCCCcCCC--ccchhccCCcccccccccccccccccchhhcCCC--CCCEEEecCCCCC
Q 005085 468 KLKYLSSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPSSIENLE--GLKQLKLTGCTKL 531 (715)
Q Consensus 468 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~--~L~~L~Ls~n~~~ 531 (715)
++++|++|+|++|.+.+ .+|..+..+++|+.|+|++| .+..+ ..+..+. +|++|+|++|++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 45555556665555444 33344455555555555555 33333 1223333 5555555555554
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.78 E-value=0.00016 Score=71.03 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=40.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhhc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGSS 150 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 150 (715)
..+++++++.++..+++...+.......+ .+..+.++++|+|.|..+..+...
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57999999999999999987754322111 255788999999999988776543
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.0016 Score=69.23 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=25.8
Q ss_pred cccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCCCEEEecC
Q 005085 465 SICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTG 527 (715)
Q Consensus 465 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls~ 527 (715)
.|.++.+|+.+.+..+ ....-...+.++++|+.+.+.. .+..++. .+.++++|+.++|..
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC
Confidence 3444555555555432 1111122344455555555532 2333332 344455555555543
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.69 E-value=0.00053 Score=72.60 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCCCcHHHHH-HHHHHhhccC-----C-ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC-C-cchHHHHHHh-
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF-----E-GKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT-Q-KIPQYIRDRL- 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F-----~-~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~-~~~~~l~~~L- 70 (715)
++|+||||+| ++++.....+ . ..+|+. .... .. ...+...++..++........ . +....+.+.+
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~---~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 126 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-ARHR---ET-PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS 126 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TTTS---CS-HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CCcC---CC-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 5899999999 9988764432 2 234444 2221 23 566777777777543322111 1 3455666666
Q ss_pred -cCCeEEEEEeCcc----C--ChHHHH----Hh--------------C----------------cC-cEEEcCCCCHHHH
Q 005085 71 -QRMKVFIVLDDVN----K--DKTILE----RY--------------G----------------TQ-RIYEVEGLNCNEV 108 (715)
Q Consensus 71 -~~kr~LlVLDDv~----r--~~~v~~----~~--------------~----------------~~-~~~~l~~L~~~es 108 (715)
.+++.+|||||++ . ..++.. .. + .. ..+.+++++.++.
T Consensus 127 ~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 127 RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQL 206 (387)
T ss_dssp TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHH
T ss_pred ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHH
Confidence 4568999999998 2 223221 00 0 01 3688999999999
Q ss_pred HHHHHhhh---cCCCCCChhHHHHHHHHHHHhC---CCc-chhHHhhhccc-----CC---ChhHHHHHHHHh
Q 005085 109 LRLFSSCA---FKENHCPEDLLKHSETAVHYAK---GNP-LALQVLGSSFY-----GK---SKPDWVNALNNL 166 (715)
Q Consensus 109 ~~LF~~~a---f~~~~~~~~~~~~~~~i~~~c~---glP-Lai~~~g~~L~-----~k---~~~~w~~~l~~l 166 (715)
.+++...+ +......+ +..+.++++++ |.| .|+..+..+.. +. +.+.++.+++..
T Consensus 207 ~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 207 RDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99998874 33222222 34567777777 998 33333322211 21 566676666554
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.62 E-value=0.00021 Score=75.66 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=80.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCC---ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC-C-cchHHHHHHhc--C
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE---GKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT-Q-KIPQYIRDRLQ--R 72 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~---~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~-~~~~~l~~~L~--~ 72 (715)
++|+|||||| ++++.....+. ..+|+. .... .. ...+...++..++........ . +....+.+.+. +
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 127 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQI---DT-PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYG 127 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHH---CS-HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCC---CC-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 5899999999 99988766553 344554 2221 12 455666666655432211111 1 33455666664 4
Q ss_pred CeEEEEEeCcc-----CChHHHH----Hh-----------------------C-------cCcEEEcCCCCHHHHHHHHH
Q 005085 73 MKVFIVLDDVN-----KDKTILE----RY-----------------------G-------TQRIYEVEGLNCNEVLRLFS 113 (715)
Q Consensus 73 kr~LlVLDDv~-----r~~~v~~----~~-----------------------~-------~~~~~~l~~L~~~es~~LF~ 113 (715)
++.+||+||++ ++.++.. .+ . ....+.+++++.++..+++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHH
Confidence 58999999997 1111110 00 0 01479999999999999998
Q ss_pred hhh---cCCCCCChhHHHHHHHHHHHhC---CCcchh
Q 005085 114 SCA---FKENHCPEDLLKHSETAVHYAK---GNPLAL 144 (715)
Q Consensus 114 ~~a---f~~~~~~~~~~~~~~~i~~~c~---glPLai 144 (715)
..+ +...... .++.+.+++.++ |.|..+
T Consensus 208 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 208 KRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp HHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHH
Confidence 764 2222223 244566677776 998743
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.58 E-value=0.0029 Score=66.76 Aligned_cols=241 Identities=10% Similarity=0.083 Sum_probs=108.2
Q ss_pred ccccChhhhcCCCCccEEEEeecCccccccCCccccccccccEEEecCCCcccccccCCCCCCccEEeecCCCCCcccCC
Q 005085 271 EINLDPRAFTNMSNVRLLKFYISGHFDVSKMSSKVHLQQESYRTQLSFKKVEQIWEGQKKAPKLKYVDLNHSTNLTRIPE 350 (715)
Q Consensus 271 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 350 (715)
+..+...+|.++.+|+.+.+..+ ...++.......+|..+.+.. +++.+....-...+|+.+.+..+ ...+..
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~ 129 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA--TTEIGN 129 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT--CCEECT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc--cccccc
Confidence 44567788999999998888621 112221111112455555543 35555544323346777777654 233332
Q ss_pred --CCCCCcceEEEEecCCCCccc-CchhhcccccceEeccCcccccccCccc-CCCcccE-EEcCCCCCCCcC--C----
Q 005085 351 --PSETPNLERMNLRNCTGLAHI-PSYVQNFNKLGNMIMAGCESLRCFPQNI-HFISSIK-IDCYKCVNLKEF--P---- 419 (715)
Q Consensus 351 --~~~l~~L~~L~L~~n~~l~~~-p~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~-L~l~~~~~l~~l--~---- 419 (715)
+... +|+.+.+..+ +..+ ...+....+|+...+..+.........+ ....... .....|..+..+ |
T Consensus 130 ~~F~~~-~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
T 4h09_A 130 YIFYNS-SVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK 206 (379)
T ss_dssp TTTTTC-CCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC
T ss_pred cccccc-eeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee
Confidence 3333 4555555442 2222 2445566666666555432111100000 0000000 111111111110 0
Q ss_pred -------CCCCCCcEEeccCCCCcccCc-ccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccc-hhc
Q 005085 420 -------RISGNVVELNLMCTPIEEVPL-SIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFP-EIL 490 (715)
Q Consensus 420 -------~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-~~~ 490 (715)
....+++.+.+..+ +..++. .+..+.+|+.+.+..+ ....-...+.++.+|+.+.+..+ ...++ ..+
T Consensus 207 ~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF 282 (379)
T 4h09_A 207 TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLC 282 (379)
T ss_dssp EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTT
T ss_pred EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccc
Confidence 11123344444322 223322 2455566666666543 22222334555666666666442 22222 345
Q ss_pred cCCcccccccccccccccccch-hhcCCCCCCEEEec
Q 005085 491 EKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLT 526 (715)
Q Consensus 491 ~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~Ls 526 (715)
..+++|+.+.+.++ .++.+++ .+.++++|+.+.|.
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 56666666666555 4444433 45556666666654
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.41 E-value=0.021 Score=60.14 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=57.2
Q ss_pred cCCCCCCCEEEcccccccccccccccCCCCccEeecCCCcCCCccchhccCCcccccccccccccccccch-hhcCCCCC
Q 005085 442 IECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGL 520 (715)
Q Consensus 442 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L 520 (715)
+....+|+.+.+..+ ........+.++.+|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++. .+..+++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 445566777766543 22233345667777777777654 22222345667777887777543 444443 46777888
Q ss_pred CEEEecCCCCCC-------CCCCcCeEEec
Q 005085 521 KQLKLTGCTKLG-------SLPETKNWMHP 543 (715)
Q Consensus 521 ~~L~Ls~n~~~~-------~lp~L~~L~l~ 543 (715)
+.+.+.++.+.. .+.+|+.+++.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcC
Confidence 888887665432 14556666553
No 172
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.35 E-value=0.00042 Score=66.90 Aligned_cols=50 Identities=8% Similarity=-0.029 Sum_probs=35.8
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVL 147 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (715)
..+.+++++.++..+++.+.+.......+ ++..+.+++.++|.|..+..+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 37899999999999999887643221111 245677889999999865443
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.32 E-value=0.0023 Score=67.72 Aligned_cols=136 Identities=12% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCcHHHHH-HHHHHhhccC-CceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCC-C-cchHHHHHHhc--CCe
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF-EGKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGT-Q-KIPQYIRDRLQ--RMK 74 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F-~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~-~~~~~l~~~L~--~kr 74 (715)
++|+|||||| ++.+...... ...+++. .+.. .. ...+..+++..++........ . .....+.+.+. +++
T Consensus 52 ~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~~~---~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 126 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELYKDKTTARFVYIN-GFIY---RN-FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 126 (389)
T ss_dssp CTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TTTC---CS-HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHhhhcCeeEEEEe-CccC---CC-HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCe
Confidence 4799999999 9988766543 2334454 2221 22 556677777766543221111 1 34455555553 568
Q ss_pred EEEEEeCccC--------------C-----------------hHHHHHhC-------cCcEEEcCCCCHHHHHHHHHhhh
Q 005085 75 VFIVLDDVNK--------------D-----------------KTILERYG-------TQRIYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 75 ~LlVLDDv~r--------------~-----------------~~v~~~~~-------~~~~~~l~~L~~~es~~LF~~~a 116 (715)
.+|||||++. . ..+..... ....+.+++++.++..+++...+
T Consensus 127 ~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 127 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred EEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 8999999971 0 00000000 01368999999999999998775
Q ss_pred cC---CCCCChhHHHHHHHHHHHh---------CCCcchh
Q 005085 117 FK---ENHCPEDLLKHSETAVHYA---------KGNPLAL 144 (715)
Q Consensus 117 f~---~~~~~~~~~~~~~~i~~~c---------~glPLai 144 (715)
-. ..... .+..+.+++++ .|.|-.+
T Consensus 207 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 207 KAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp HHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred HhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 32 22222 35677888888 7877443
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.89 E-value=0.0032 Score=67.92 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=17.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCc
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEG 22 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~ 22 (715)
++|+|||||| ++++.+...+..
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~ 160 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPD 160 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHHHHHhCCC
Confidence 4799999999 999987666543
No 175
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.013 Score=59.79 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=43.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCC-----ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHh---
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE-----GKYFMANVREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRL--- 70 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~-----~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L--- 70 (715)
++|+|||++| +|.+++...-+ ...++. +.- ..... -..+...|..++.+........ +....+.+.+
T Consensus 53 pPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~-INc-~~~~t-~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~ 129 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDELITSSARKELPIFDYIH-IDA-LELAG-MDALYEKIWFAISKENLCGDISLEALNFYITNVPKA 129 (318)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEE-EET-TCCC---HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCceEEEE-Eec-cccCC-HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhc
Confidence 5899999999 99997654321 122332 211 11112 4566777777775543211111 2233333333
Q ss_pred cCCeEEEEEeCcc
Q 005085 71 QRMKVFIVLDDVN 83 (715)
Q Consensus 71 ~~kr~LlVLDDv~ 83 (715)
+++++++|||+++
T Consensus 130 ~~~~~ii~lDE~d 142 (318)
T 3te6_A 130 KKRKTLILIQNPE 142 (318)
T ss_dssp GSCEEEEEEECCS
T ss_pred cCCceEEEEecHH
Confidence 4578999999998
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0075 Score=58.77 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=39.0
Q ss_pred hHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 86 KTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 86 ~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
..+...+.....+++++++.++..+++.+.+-... ..+ ++..+.+++.+.|.+-.+..
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 55655554446899999999999999887764222 122 24567788888887755543
No 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0031 Score=64.84 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=35.9
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc-hhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL-ALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 148 (715)
..+++++++.++..+++...+.......+ ++....+++.++|.|. |+..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 48999999999999999887643211111 2457889999999995 444443
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.34 E-value=0.031 Score=57.41 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=29.2
Q ss_pred hHHHHHhCcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 86 KTILERYGTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 86 ~~v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
+.+...+....++++++ +.++..+++.+.+.... ..+ ++....+++++ |..
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCH
Confidence 33444443345688888 88888888877664222 112 23455666666 543
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.32 E-value=0.0051 Score=58.47 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
++|+|||||| ++++....+....+++.
T Consensus 62 ~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4799999999 99998766655566665
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.00 E-value=0.019 Score=58.85 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=35.9
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
..+.+++++.++..+++...+......-+ .+..+.+++.++|.|-.+..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT--EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 37899999999999998877643322111 2456788899999997654443
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.13 E-value=0.026 Score=62.12 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=32.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCC-cchhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGN-PLALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~gl-PLai~~~g 148 (715)
..+.+++++.++..+.+.+.+.... ...+ +....|++.++|. +-|+..+.
T Consensus 202 ~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 202 LDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 4688899999999988877664322 1222 3466788888884 44555443
No 182
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.07 E-value=0.016 Score=54.39 Aligned_cols=15 Identities=7% Similarity=0.003 Sum_probs=7.1
Q ss_pred hcCCCCCCEEEecCC
Q 005085 514 IENLEGLKQLKLTGC 528 (715)
Q Consensus 514 l~~l~~L~~L~Ls~n 528 (715)
+..-+.|++|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 333344555555543
No 183
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.95 E-value=0.052 Score=50.95 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=52.8
Q ss_pred CCcEEeccCC-CCcc-----cCcccCCCCCCCEEEcccccccc----cccccccCCCCccEeecCCCcCCCc----cchh
Q 005085 424 NVVELNLMCT-PIEE-----VPLSIECLPNLEILEMSFCYSLK----RLSTSICKLKYLSSLDLSYCINLES----FPEI 489 (715)
Q Consensus 424 ~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~L~~n~~~~~----~p~~ 489 (715)
.|++|+|+++ .|.. +-..+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|++|.+... +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4566666664 5541 23334555667777776666442 2222333445667777766654421 2233
Q ss_pred ccCCcccccccccccc--ccc-----ccchhhcCCCCCCEEEecCC
Q 005085 490 LEKMELLEEINLEEAS--NIK-----ELPSSIENLEGLKQLKLTGC 528 (715)
Q Consensus 490 ~~~l~~L~~L~L~~n~--~~~-----~lp~~l~~l~~L~~L~Ls~n 528 (715)
+..-+.|++|+|++|. .++ .+...+..-+.|+.|+++.|
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4444556666666541 122 12333444455666665543
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.82 E-value=0.08 Score=53.86 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=33.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
..+.+.+++.++..+++...+-.....-+ .+....+++.++|.+-.+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBC--HHHHHHHHHTTTTCHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 47899999999999988876643222111 24567778888888865443
No 185
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.80 E-value=0.082 Score=55.24 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=35.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
..+++.+++.++..+++.+.+-... ... .+....+++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 5789999999999998887653211 112 2456788899999998776543
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.79 E-value=0.045 Score=50.71 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||| ++++.+.
T Consensus 46 ~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 9998764
No 187
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.53 E-value=0.052 Score=47.39 Aligned_cols=53 Identities=9% Similarity=-0.067 Sum_probs=28.0
Q ss_pred EEeccCCCCc--ccCcccCCCCCCCEEEcccccccccccccccCCCCccEeecCCCc
Q 005085 427 ELNLMCTPIE--EVPLSIECLPNLEILEMSFCYSLKRLSTSICKLKYLSSLDLSYCI 481 (715)
Q Consensus 427 ~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~n~ 481 (715)
.++-+++.++ .+|..+ -++|++|+|++|.+...-+..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 555432 2345566666655444434445555666666666554
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.18 E-value=0.61 Score=46.16 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=37.9
Q ss_pred CcEEEcCCCCH-HHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCC------cchhHHhhhcccCCChhHHHHHHHHhh
Q 005085 95 QRIYEVEGLNC-NEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGN------PLALQVLGSSFYGKSKPDWVNALNNLK 167 (715)
Q Consensus 95 ~~~~~l~~L~~-~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~gl------PLai~~~g~~L~~k~~~~w~~~l~~l~ 167 (715)
...+.+++++. ++..+++.+.. . .. .+....+++.+.|. +-++.++-.+-.......++.+++.+.
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~~~---~-~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALELLG---N-FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 262 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHHHT---C-SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred ceEEcCCCccHHHHHHHHHHhcC---C-CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 45678888888 66666655421 1 11 23467778888773 333333333322234456777776665
Q ss_pred ccC
Q 005085 168 RIS 170 (715)
Q Consensus 168 ~~~ 170 (715)
...
T Consensus 263 ~~~ 265 (272)
T 1d2n_A 263 EEG 265 (272)
T ss_dssp HTS
T ss_pred HcC
Confidence 543
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.82 E-value=0.19 Score=51.30 Aligned_cols=52 Identities=10% Similarity=-0.149 Sum_probs=38.0
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLGS 149 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 149 (715)
.++.+++++.+|..+++.+.+.......+ .+..+.+++++.|.|-.+..+..
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHH
Confidence 58999999999999998887643222111 25678889999999977765543
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.78 E-value=0.11 Score=47.93 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+|||||| ++.+.+.
T Consensus 51 ~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 8888654
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.55 E-value=0.5 Score=49.08 Aligned_cols=46 Identities=4% Similarity=-0.120 Sum_probs=30.4
Q ss_pred EEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhC-CCcchh
Q 005085 97 IYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAK-GNPLAL 144 (715)
Q Consensus 97 ~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~-glPLai 144 (715)
.+.+++++.++..+++...+-.....-+ .+..+.+++.+. |.|-.+
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~~~~~~~--~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEEEDVEMS--EDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHHHSCHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCCCHHHH
Confidence 4788999999999998877643221111 245677788887 766443
No 192
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.41 E-value=0.43 Score=51.10 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=32.2
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCC----CChh-HHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENH----CPED-LLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~----~~~~-~~~~~~~i~~~c~glPLai 144 (715)
.++.+++++.++..+++.+.+-.... .... -++..+.+++.++|.+-.+
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRA 211 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHH
Confidence 47889999999999998876533110 0001 1356677888888876443
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.39 E-value=0.47 Score=47.28 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=26.6
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHHHhCCC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENH-CPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~-~~~~~~~~~~~i~~~c~gl 140 (715)
+..+.++.++.++..+++..++..... ...+ ...+++...|.
T Consensus 180 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 180 DRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred CeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 347888999999999998877643221 1222 34555556663
No 194
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.31 E-value=0.25 Score=50.95 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=35.1
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchhHHh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLALQVL 147 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai~~~ 147 (715)
..+.+++++.++..+.+.+.+-... ..+ ++..+.+++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3789999999999998887664322 122 356788899999998765443
No 195
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.24 E-value=0.078 Score=46.23 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=29.4
Q ss_pred EEEecCCCcc--cccccCCCCCCccEEeecCCCCCcccCC--CCCCCcceEEEEecC
Q 005085 313 RTQLSFKKVE--QIWEGQKKAPKLKYVDLNHSTNLTRIPE--PSETPNLERMNLRNC 365 (715)
Q Consensus 313 ~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n 365 (715)
+++-+++.++ .+|.++. ++|++|+|++|.+ ..+|. |..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcC-CccChhhhhhccccCEEEecCC
Confidence 4566666666 6665532 3567777777643 33332 555666666666665
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.08 E-value=0.14 Score=47.16 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+|||||| ++.+....
T Consensus 51 ~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CGGGCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4699999999 88887543
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.72 E-value=0.55 Score=48.64 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+|||+|| ++.+...
T Consensus 92 ppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 92 PPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 4799999999 9988764
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.71 E-value=0.44 Score=48.63 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.8
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+|||+|| ++.+....
T Consensus 59 ppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 59 PPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp SSSSCHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHCC
Confidence 4799999999 99887543
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.47 E-value=0.96 Score=46.08 Aligned_cols=16 Identities=25% Similarity=0.330 Sum_probs=14.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+|||+|| ++.+..
T Consensus 53 ppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SSSSCHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHc
Confidence 4799999999 988875
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.40 E-value=0.079 Score=53.91 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=19.7
Q ss_pred CCCCcHHHHH-HHHHHhh-ccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFS-QKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~-~~F~~~~wv~ 27 (715)
..|+|||+|| ++++.+. ..-...+++.
T Consensus 160 ~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp STTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3799999999 9999766 5444445554
No 201
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.18 E-value=0.84 Score=46.78 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=34.4
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhHHhh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQVLG 148 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 148 (715)
..+.+++++.++..+.+.+.. ... .+.+..+++.++|.|..+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 579999999999999888765 111 2445778899999997665544
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=1.2 Score=46.63 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=28.6
Q ss_pred CcCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 93 GTQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 93 ~~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
.-+..++++..+.++-.++|..+.-+-. ...-++ ..+++.+.|.-
T Consensus 309 RfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 309 RIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred cCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 3467899999999998889887653321 122233 45566676653
No 203
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.80 E-value=0.11 Score=52.64 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=33.6
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEe-cchhhhcCCcHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhcCCeEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMAN-VREESEKCGVLVHLRNQVLSKVLGENFDIGTQ-KIPQYIRDRLQRMKVFI 77 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~-v~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~L~~kr~Ll 77 (715)
++|+|||||| ++... .-....|+.. ..+.. + . . . .+. .....+.+.+...+ +|
T Consensus 131 pPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v---~-~-------------~--~-~~le~~l~~i~~~l~~~~-LL 186 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA---LGGKDKYATVRFGEPL---S-G-------------Y--N-TDFNVFVDDIARAMLQHR-VI 186 (331)
T ss_dssp SCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSS---T-T-------------C--B-CCHHHHHHHHHHHHHHCS-EE
T ss_pred CCCCCHHHHHHHHHHh---CCCCEEEEEecchhhh---h-h-------------h--h-cCHHHHHHHHHHHHhhCC-EE
Confidence 5899999999 77665 1123456652 01110 0 0 0 0 111 34455666666666 99
Q ss_pred EEeCcc
Q 005085 78 VLDDVN 83 (715)
Q Consensus 78 VLDDv~ 83 (715)
|+|++.
T Consensus 187 VIDsI~ 192 (331)
T 2vhj_A 187 VIDSLK 192 (331)
T ss_dssp EEECCT
T ss_pred EEeccc
Confidence 999998
No 204
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.57 E-value=0.45 Score=46.68 Aligned_cols=46 Identities=11% Similarity=-0.069 Sum_probs=26.7
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+.++..+.++-.+++...+-...... +.......+++.+.|.+-
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCH
Confidence 5677888888888888877653322111 111223566666666643
No 205
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.48 E-value=0.84 Score=47.05 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=33.2
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcchhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLai~~ 146 (715)
..+++++++.++..+.+.+.+-... ..+. ++....|++.++|.+-.+..
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHH
T ss_pred eEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHH
Confidence 5789999999999998887663211 1110 14567788889998754433
No 206
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.68 E-value=1.8 Score=44.70 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=26.8
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCC-cchhHH
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGN-PLALQV 146 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 146 (715)
..+.++..+.++..+++...+-.....-. .+....+++.+.|. +-+|..
T Consensus 244 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHH
Confidence 46677777777777777665532111111 23456667777763 333433
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.44 E-value=1.7 Score=46.39 Aligned_cols=16 Identities=25% Similarity=0.330 Sum_probs=14.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+|||+|| ++.+..
T Consensus 175 ppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 175 PPGTGKSYLAKAVATEA 191 (444)
T ss_dssp STTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 4799999999 988875
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.31 E-value=2.8 Score=41.83 Aligned_cols=45 Identities=9% Similarity=-0.084 Sum_probs=25.3
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+.++..+.++..+++...+-.....-+ .+....+++.+.|.+-
T Consensus 182 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSG 226 (297)
T ss_dssp EEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCH
Confidence 45667777777777776655432111111 2345667777777664
No 209
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.60 E-value=1.1 Score=45.69 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=33.9
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchhH
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLALQ 145 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai~ 145 (715)
+..+.+++++.++..+++.+.+-...... -.+..+.+++.+.|.|-.+.
T Consensus 176 ~~~i~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 176 GMQFRLEFYKDSELALILQKAALKLNKTC--EEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCEE--CHHHHHHHHHTTTTCHHHHH
T ss_pred CEEeeCCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHCcCHHHHH
Confidence 46899999999999999887763322111 13456778888899884443
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.34 E-value=2.1 Score=45.39 Aligned_cols=43 Identities=9% Similarity=-0.033 Sum_probs=26.9
Q ss_pred cCcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCC
Q 005085 94 TQRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 94 ~~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~gl 140 (715)
-+..++++..+.++-.++|..+.-+-. ...-++ ..+++.+.|.
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 457788888888888888876653321 112233 4456667664
No 211
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.30 E-value=3.3 Score=41.83 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++.+.+
T Consensus 56 ~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDV 72 (324)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 3699999999 888776
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.82 E-value=0.59 Score=47.14 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+|||||| ++.+...
T Consensus 57 p~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SSSSSHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHhC
Confidence 4799999999 9888754
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.21 E-value=1.3 Score=46.84 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|.|||+|| ++.+...-
T Consensus 214 PPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CTTTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 5899999999 99887543
No 214
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.64 E-value=4.5 Score=42.23 Aligned_cols=45 Identities=16% Similarity=-0.002 Sum_probs=28.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcc
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPL 142 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPL 142 (715)
..+.++..+.++-.+++...+-.....-. ++....+++.+.|..-
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSG 319 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCH
Confidence 46778888888888888776633222111 2345677777877543
No 215
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.88 E-value=1.1 Score=47.32 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=45.0
Q ss_pred CCCcHHHHH-HHHHHhhccCC----ceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-c--------ch
Q 005085 2 GGIGKTTIG-VVFNQFSQKFE----GKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-K--------IP 63 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~----~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~--------~~ 63 (715)
.|+|||||+ .+.++...+-+ .++++- +.+..+ + +.++.+++...-.-+.. ...++ . ..
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~~--E-v~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a 235 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITFE--E-AEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMA 235 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECHH--H-HHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCcH--H-HHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHH
Confidence 699999999 99887655434 344443 555432 2 56666665543111000 11111 1 12
Q ss_pred HHHHHHhc---CCeEEEEEeCccC
Q 005085 64 QYIRDRLQ---RMKVFIVLDDVNK 84 (715)
Q Consensus 64 ~~l~~~L~---~kr~LlVLDDv~r 84 (715)
-.+.++++ ++.+|+++||+.|
T Consensus 236 ~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 236 LTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHhcCCeEEEEEcChHH
Confidence 23455553 7999999999974
No 216
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=85.83 E-value=1.2 Score=45.95 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=20.2
Q ss_pred CCCcHHHHH-HHHHHhhcc-CCceEEEEecchh
Q 005085 2 GGIGKTTIG-VVFNQFSQK-FEGKYFMANVREE 32 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~-F~~~~wv~~v~~~ 32 (715)
.|+|||||+ .+.+.+... =+..+.+..+.+.
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAENHPDTIRIILLIDER 216 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeEEEEEEeccC
Confidence 699999999 999876543 2334334335443
No 217
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=85.81 E-value=0.94 Score=48.30 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCCcHHHHH-HHHHHhhccC-CceEEEEecchhhhcCCcHHHHHHHHHHHHhCCC-----CCCCCC---cc-----hHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKF-EGKYFMANVREESEKCGVLVHLRNQVLSKVLGEN-----FDIGTQ---KI-----PQYI 66 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F-~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~-----~~~~~~---~~-----~~~l 66 (715)
.|+|||||| .+..++..++ +.++++. +.+..+ + ..++.+++...-.... ....+. .. .-.+
T Consensus 160 sGvGKTtL~~~l~~~~~~~~~~i~V~~~-iGertt--e-v~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~lti 235 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQEHGGISVFAG-VGERTR--E-GNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTM 235 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCCEEEEE-ESSCHH--H-HHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhhccCcEEEEee-eccCch--H-HHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 699999999 8887665544 3444443 443322 1 4455555533200000 011111 00 1123
Q ss_pred HHHh---cCCeEEEEEeCcc
Q 005085 67 RDRL---QRMKVFIVLDDVN 83 (715)
Q Consensus 67 ~~~L---~~kr~LlVLDDv~ 83 (715)
.++. ++|++|+++||+.
T Consensus 236 AEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 236 AEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHhcCCcEEEEeccHH
Confidence 4433 5899999999997
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.67 E-value=2.1 Score=45.40 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=25.2
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~gl 140 (715)
+..++++..+.++-.++|..+.-+-. ....++ ..+++.+.|.
T Consensus 344 D~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 344 DRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred ceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 45778888888888888876653321 122233 4455556664
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.28 E-value=0.95 Score=42.84 Aligned_cols=24 Identities=17% Similarity=-0.045 Sum_probs=16.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| .+.. ..=...+|+.
T Consensus 28 ~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 28 PYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp STTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 4799999999 6665 2224566776
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.25 E-value=2.5 Score=43.15 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=30.4
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCcch
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNPLA 143 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glPLa 143 (715)
..+.+.+++.++..+.....+-... ... ++..+.+++.++|.+-.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 3688999999998887776552211 112 24567788888987754
No 221
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.67 E-value=1.6 Score=45.28 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=43.4
Q ss_pred CCCCcHHHHH-HHHHHhhccC-CceEEEEecchhhhcCCcHHHHHHHHHHHHhCCC-CCCCCCcc---------hHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF-EGKYFMANVREESEKCGVLVHLRNQVLSKVLGEN-FDIGTQKI---------PQYIRD 68 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F-~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~---------~~~l~~ 68 (715)
..|+|||||+ .+.+.+.+.. +..+.+..+.+... + +.++.+.+ ...- ....++.. .-.+.+
T Consensus 182 ~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~--E-v~~~~~~~----~~~vV~atadep~~~r~~~a~~alt~AE 254 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE--E-VTEMQRLV----KGEVVASTFDEPASRHVQVAEMVIEKAK 254 (422)
T ss_dssp CSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHH--H-HHHHHTTC----SSEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChH--H-HHHHHHHh----CeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 3699999999 8888765433 33343444554322 1 33333322 1000 01111111 111222
Q ss_pred Hh--cCCeEEEEEeCccCChHHHHHh
Q 005085 69 RL--QRMKVFIVLDDVNKDKTILERY 92 (715)
Q Consensus 69 ~L--~~kr~LlVLDDv~r~~~v~~~~ 92 (715)
++ +++.+||++||+.|--+..+.+
T Consensus 255 yfrd~G~dVLil~DslTR~A~A~rev 280 (422)
T 3ice_A 255 RLVEHKKDVIILLDSITRLARAYNTV 280 (422)
T ss_dssp HHHHTSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEeCchHHHHHHHHH
Confidence 33 5899999999998655544444
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.04 E-value=1.3 Score=50.70 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=26.2
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCCc
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGNP 141 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~glP 141 (715)
+..++++..+.++-.+++..+.-+.. ....++ ..+++++.|.-
T Consensus 364 d~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 364 DREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 45788888888888888876653221 112233 45666677653
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.93 E-value=0.89 Score=48.16 Aligned_cols=42 Identities=7% Similarity=-0.068 Sum_probs=25.6
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~gl 140 (715)
+..++++..+.++-.++|..+.-+-. ...-++ ..+++.+.|.
T Consensus 344 D~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 344 DRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred eEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 46788888888888888876552211 122233 4456666664
No 224
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=83.28 E-value=3.3 Score=44.02 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCCcHHHHH-HHHHHh-hccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCC------CC----CCCCCc--------
Q 005085 2 GGIGKTTIG-VVFNQF-SQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGE------NF----DIGTQK-------- 61 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~-~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~------~~----~~~~~~-------- 61 (715)
.|+|||||+ .+.+++ +.+-+.++++- +.+..+ + +.++.+++...-... .. ...++.
T Consensus 162 ~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER~r--E-v~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~ 237 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTR--E-GNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA 237 (482)
T ss_dssp TTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCCHH--H-HHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCcch--H-HHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHH
Confidence 699999999 887765 44445666654 655433 2 667777776542221 10 111111
Q ss_pred -chHHHHHHh---cCCeEEEEEeCccC
Q 005085 62 -IPQYIRDRL---QRMKVFIVLDDVNK 84 (715)
Q Consensus 62 -~~~~l~~~L---~~kr~LlVLDDv~r 84 (715)
..-.+.+++ ++|.+|+++||+.|
T Consensus 238 ~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 238 LTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 122233444 47999999999973
No 225
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=83.24 E-value=2.4 Score=45.41 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=42.8
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-cc--------hHHH
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-KI--------PQYI 66 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~~--------~~~l 66 (715)
.|+|||||| .+.++.. -+..+.+..+.+..+ + +.++.+++...-.-+.. ...++ .. .-.+
T Consensus 171 ~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~--E-v~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti 245 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQS--T-VAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAM 245 (502)
T ss_dssp SSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCHH--H-HHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhhc--CCcEEEEEECCCcch--H-HHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 699999996 7777653 454433333555432 2 56666666543211110 11111 01 1223
Q ss_pred HHHh--cCCeEEEEEeCccC
Q 005085 67 RDRL--QRMKVFIVLDDVNK 84 (715)
Q Consensus 67 ~~~L--~~kr~LlVLDDv~r 84 (715)
.+++ ++|.+|+++||+.|
T Consensus 246 AEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 246 GEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHcCCcEEEEEecHHH
Confidence 3444 58999999999973
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.52 E-value=1.4 Score=46.36 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=25.1
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHHHhCCC
Q 005085 95 QRIYEVEGLNCNEVLRLFSSCAFKEN-HCPEDLLKHSETAVHYAKGN 140 (715)
Q Consensus 95 ~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~~~~~i~~~c~gl 140 (715)
+..++++..+.++-.++|..+.-+-. ...-++ ..+++.+.|.
T Consensus 345 D~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 345 DRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred eEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 45677888888888888877653321 122233 4455556664
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=81.77 E-value=0.94 Score=43.24 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=15.7
Q ss_pred CCCCcHHHHH-HHHHHhhc-cCCc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-KFEG 22 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-~F~~ 22 (715)
.||+||||+| .+...... -++.
T Consensus 14 kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCE
Confidence 4899999999 77765443 3444
No 228
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=81.64 E-value=2.4 Score=45.87 Aligned_cols=16 Identities=44% Similarity=0.459 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+|||++| ++.++.
T Consensus 246 ppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 246 PPGTGKTLIARAVANET 262 (489)
T ss_dssp STTSSHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 4799999999 888765
No 229
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=81.50 E-value=2.3 Score=45.55 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=43.8
Q ss_pred CCCcHHHHH--HHHHHhhc------cCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCCc--------
Q 005085 2 GGIGKTTIG--VVFNQFSQ------KFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQK-------- 61 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~------~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~~-------- 61 (715)
.|+|||+|| .+.++... +-+..+.+..+.+..+ + +.++.+++...-..+.. ...++.
T Consensus 171 ~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~--E-v~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 247 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS--T-VAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 247 (510)
T ss_dssp TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH--H-HHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH--H-HHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHH
Confidence 699999996 78887663 3554343333655432 2 56666666542110000 111110
Q ss_pred -chHHHHHHh--cCCeEEEEEeCccC
Q 005085 62 -IPQYIRDRL--QRMKVFIVLDDVNK 84 (715)
Q Consensus 62 -~~~~l~~~L--~~kr~LlVLDDv~r 84 (715)
..-.+.+++ ++|.+||++||+.|
T Consensus 248 ~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 248 YSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 111233344 58999999999973
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.94 E-value=0.68 Score=47.27 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=18.4
Q ss_pred CCCCcHHHHH-HHHHHhhcc------CCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQK------FEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~------F~~~~wv~ 27 (715)
.+|+|||||| ++...+... =..++|+.
T Consensus 115 ~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3799999999 776654322 24567776
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.34 E-value=1.5 Score=42.63 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.3
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||| .+.....
T Consensus 57 ~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 4799999999 8888654
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.89 E-value=1.8 Score=42.87 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.3
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||| .+.....
T Consensus 81 p~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCcChHHHHHHHHHHHcC
Confidence 4799999999 8888664
No 233
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=79.87 E-value=4.7 Score=43.07 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCCcHHHHH-HHHHHh-hccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCC-------CC----CCCCC--------
Q 005085 2 GGIGKTTIG-VVFNQF-SQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGE-------NF----DIGTQ-------- 60 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~-~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~-------~~----~~~~~-------- 60 (715)
.|+|||+|+ .+.+++ +.+-+.++++- +.+..+ + +.++.+++...-..+ .. ...++
T Consensus 174 ~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER~r--E-v~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~ 249 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIAKAHGGVSVFGG-VGERTR--E-GNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRV 249 (498)
T ss_dssp SSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCCSH--H-HHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTH
T ss_pred CCCCchHHHHHHHHHHHhhCCCEEEEEE-cccCcH--H-HHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 699999999 888765 44556777774 655433 2 667777776542111 00 01111
Q ss_pred -cchHHHHHHhc---CCeEEEEEeCccC
Q 005085 61 -KIPQYIRDRLQ---RMKVFIVLDDVNK 84 (715)
Q Consensus 61 -~~~~~l~~~L~---~kr~LlVLDDv~r 84 (715)
...-.+.++++ ++.+|+++||+.|
T Consensus 250 ~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 250 GLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11233445553 6899999999973
No 234
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=79.20 E-value=0.94 Score=43.33 Aligned_cols=25 Identities=12% Similarity=-0.141 Sum_probs=16.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
.|.||||++ .+..+...+-..++.+
T Consensus 21 mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 599999999 7777655443333333
No 235
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.97 E-value=0.75 Score=41.95 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.8
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| ++.++..
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 5799999999 8777643
No 236
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=78.49 E-value=1.3 Score=41.75 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=17.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...= .++-|.
T Consensus 10 GGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 999999999 7777665543 444443
No 237
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=78.27 E-value=3.2 Score=44.49 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCCc---------chHHH
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQK---------IPQYI 66 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~~---------~~~~l 66 (715)
.|+|||||| .+.++.. -+..+.+..+.+..+ + +.++.+++...-.-+.. ...++. ..-.+
T Consensus 184 ~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~~--E-v~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 258 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKKS--A-IARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAM 258 (515)
T ss_dssp TTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCHH--H-HHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCcH--H-HHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 699999996 7777653 454433333555432 2 56666666542111100 111110 11223
Q ss_pred HHHh--cCCeEEEEEeCccC
Q 005085 67 RDRL--QRMKVFIVLDDVNK 84 (715)
Q Consensus 67 ~~~L--~~kr~LlVLDDv~r 84 (715)
.+++ ++|.+||++||+.|
T Consensus 259 AEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 259 GEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHcCCcEEEEeccHHH
Confidence 3344 58999999999973
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=78.22 E-value=1.3 Score=41.26 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=17.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+......+=..++.|.
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 899999999 77776555333344444
No 239
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=78.17 E-value=3.3 Score=43.79 Aligned_cols=80 Identities=11% Similarity=0.104 Sum_probs=42.6
Q ss_pred CCCcHHHHH-HHHHHhhc----------cCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-c----
Q 005085 2 GGIGKTTIG-VVFNQFSQ----------KFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-K---- 61 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~----------~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-~---- 61 (715)
.|+|||||+ .+.++... +=+..+.+..+.+..+ + +.++.+++...-.-+.. ...++ .
T Consensus 156 ~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~--E-v~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~ 232 (464)
T 3gqb_B 156 SGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQR--E-LSYFIQEFERTGALSRSVLFLNKADDPTIERI 232 (464)
T ss_dssp TTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHH--H-HHHHHHHHHHTSGGGGEEEEEEETTSCTHHHH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchH--H-HHHHHHHhhhcccccceEEEEECCCCCHHHHH
Confidence 699999999 88886443 1122333333554432 2 55666665442100000 11111 1
Q ss_pred ----chHHHHHHhc---CCeEEEEEeCccC
Q 005085 62 ----IPQYIRDRLQ---RMKVFIVLDDVNK 84 (715)
Q Consensus 62 ----~~~~l~~~L~---~kr~LlVLDDv~r 84 (715)
..-.+.++++ ++.+|+++||+.|
T Consensus 233 ~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 233 LTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1223455553 7999999999974
No 240
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=77.99 E-value=4.1 Score=40.96 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=17.0
Q ss_pred EEEcCCCCHHHHHHHHHhhh
Q 005085 97 IYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 97 ~~~l~~L~~~es~~LF~~~a 116 (715)
+++++++++++..+...+.+
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHHHHh
Confidence 88999999999888887765
No 241
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=77.96 E-value=2 Score=46.06 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=40.6
Q ss_pred CCCcHHHHH--HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-----CCCCC------------cc
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-----DIGTQ------------KI 62 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~------------~~ 62 (715)
.|+|||+|| .+.++.. -+..+.+..+.+..+ + +.++.+++...-.-+.. ..++. ..
T Consensus 172 ~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~--E-v~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 246 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQQG--QNVICVYVAIGQKAS--S-VAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 246 (507)
T ss_dssp SSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHH--H-HHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCch--H-HHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 699999996 7777653 454433333555432 2 55555555432110000 01110 12
Q ss_pred hHHHHHHhcCCeEEEEEeCcc
Q 005085 63 PQYIRDRLQRMKVFIVLDDVN 83 (715)
Q Consensus 63 ~~~l~~~L~~kr~LlVLDDv~ 83 (715)
++.+++ ++|.+||++||+.
T Consensus 247 AEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 247 AEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHH--cCCcEEEEEecHH
Confidence 333444 5899999999997
No 242
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=77.93 E-value=4.2 Score=41.67 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=18.2
Q ss_pred CCCCcHHHHH-HHHHHhhc------cCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQ------KFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~------~F~~~~wv~ 27 (715)
.+|+|||||| ++...+.. .=..++|+.
T Consensus 130 ~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3699999999 77665322 224567876
No 243
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=77.57 E-value=4.4 Score=43.26 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=40.8
Q ss_pred CCCcHHHHH--HHHHHhhccCCce-EEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC-------------c
Q 005085 2 GGIGKTTIG--VVFNQFSQKFEGK-YFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ-------------K 61 (715)
Q Consensus 2 gGiGKTTLa--~vy~~~~~~F~~~-~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~-------------~ 61 (715)
.|+|||+|| .+.++ ++-+.. +++- +.+..+ + +.++.+++...-..+.. ...++ .
T Consensus 171 ~g~GKT~l~l~~I~n~--~~~dv~~V~~~-IGeR~~--e-v~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~t 244 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQ--RDSGIKCIYVA-IGQKAS--T-ISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCA 244 (513)
T ss_dssp SSSSHHHHHHHHHHTT--SSSSCEEEEEE-ESCCHH--H-HHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhh--ccCCceEEEEE-ecCChH--H-HHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHH
Confidence 499999997 67775 333443 4443 655432 2 56666665443111110 11111 1
Q ss_pred chHHHHHHhcCCeEEEEEeCcc
Q 005085 62 IPQYIRDRLQRMKVFIVLDDVN 83 (715)
Q Consensus 62 ~~~~l~~~L~~kr~LlVLDDv~ 83 (715)
.++.+++ ++|.+|||+||+.
T Consensus 245 iAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 245 MGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHh--cCCCEEEEecChH
Confidence 1233333 5899999999997
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.70 E-value=2.4 Score=43.68 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=19.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++...+...=..++|+.
T Consensus 69 ppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4799999999 87776544334466776
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=75.34 E-value=2.5 Score=42.54 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCCCcHHHHH-HHHHHhhccC--CceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF--EGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F--~~~~wv~ 27 (715)
.+|+|||||| ++.......+ ..++||.
T Consensus 36 ~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4799999999 7666554442 3567876
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.88 E-value=1.2 Score=40.24 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+..+..
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 4799999999 8776643
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.72 E-value=3.8 Score=37.48 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.++..
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 8887654
No 248
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=74.14 E-value=2 Score=42.08 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=14.3
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+..+
T Consensus 10 GGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHC
Confidence 999999999 777665543
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.77 E-value=1.2 Score=45.23 Aligned_cols=15 Identities=33% Similarity=0.206 Sum_probs=12.1
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
.+|+|||||| ++...
T Consensus 106 ~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVN 121 (322)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3799999999 76654
No 250
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.64 E-value=1.5 Score=43.83 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.2
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+|||+|| ++++....
T Consensus 44 ppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CTTSCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 5899999999 99987743
No 251
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=73.21 E-value=2.1 Score=40.94 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=18.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+..+=..++.|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 899999999 77776655433344444
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=73.07 E-value=5.8 Score=46.22 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+||||+| .+.+++.
T Consensus 199 ~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 4799999999 8888753
No 253
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.99 E-value=7.3 Score=38.85 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||+| .+.+....
T Consensus 55 ~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSSSSHHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 4799999999 88886543
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.98 E-value=1.3 Score=39.95 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.9
Q ss_pred CCCCcHHHHH-HH
Q 005085 1 MGGIGKTTIG-VV 12 (715)
Q Consensus 1 mgGiGKTTLa-~v 12 (715)
+.|+||||+| .+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5899999999 77
No 255
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=72.80 E-value=1.9 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=17.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
||+||||+| .+...+...=..++-|
T Consensus 9 GGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 899999999 7777655442333333
No 256
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.59 E-value=1.4 Score=40.34 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 887754
No 257
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=72.50 E-value=2.4 Score=40.75 Aligned_cols=18 Identities=33% Similarity=0.387 Sum_probs=15.3
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 14 GGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTS
T ss_pred CCcchHHHHHHHHHHHHhC
Confidence 899999999 888776665
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=72.14 E-value=2.5 Score=38.73 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||+| .+.++...
T Consensus 9 ~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999 88887653
No 259
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=72.08 E-value=5.7 Score=42.18 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCCcHHHHH-HHHHHhhc-cC---CceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC----CCCCC---------cch
Q 005085 2 GGIGKTTIG-VVFNQFSQ-KF---EGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF----DIGTQ---------KIP 63 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~-~F---~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~---------~~~ 63 (715)
.|+|||||+ .+.++... +- +.++++- +.+..+ + +.++.+++...-.-+.. ...++ ...
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~-iGER~~--E-v~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a 236 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAA-MGITNE--E-AQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMA 236 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE-EEECHH--H-HHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEE-ccCCcH--H-HHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHH
Confidence 699999999 88886442 21 2334443 555433 2 66666666543111100 11111 112
Q ss_pred HHHHHHhc---CCeEEEEEeCcc
Q 005085 64 QYIRDRLQ---RMKVFIVLDDVN 83 (715)
Q Consensus 64 ~~l~~~L~---~kr~LlVLDDv~ 83 (715)
-.+.++++ ++.+|+++||+.
T Consensus 237 ~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 237 LTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHhcCCeEEEEEeCHH
Confidence 23444543 699999999996
No 260
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=71.62 E-value=1.6 Score=40.68 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+....
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 5799999999 887765
No 261
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=71.32 E-value=2.4 Score=41.47 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=14.2
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 28 GGvGKTT~a~nLA~~la~~ 46 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQ 46 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 899999999 777655543
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=71.30 E-value=1.7 Score=39.56 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=12.1
Q ss_pred CCCCcHHHHH-HHHH
Q 005085 1 MGGIGKTTIG-VVFN 14 (715)
Q Consensus 1 mgGiGKTTLa-~vy~ 14 (715)
++|+||||+| ++..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 5799999999 7776
No 263
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=71.01 E-value=2.7 Score=41.20 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+...+.
T Consensus 37 GGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS 53 (267)
T ss_dssp SSSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHH
Confidence 899999999 7777666
No 264
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=70.75 E-value=5.5 Score=40.19 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=26.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKV 50 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~ 50 (715)
.+|+||||+| ++...+..+=..++|++ .- .. ..++.+.+....
T Consensus 76 ~pG~GKTtl~l~ia~~~a~~g~~vl~~s-lE-----~s-~~~l~~R~~~~~ 119 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNMSDNDDVVNLHS-LE-----MG-KKENIKRLIVTA 119 (315)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCEEEEEE-SS-----SC-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEE-CC-----CC-HHHHHHHHHHHH
Confidence 3799999999 77655433225677776 21 12 556666665543
No 265
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=70.43 E-value=2.8 Score=40.80 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.||+||||++ .+.....
T Consensus 22 kgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4899999999 7776554
No 266
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=70.05 E-value=2.7 Score=41.79 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=14.0
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 11 GGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHHHHC
Confidence 999999999 777655443
No 267
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.95 E-value=3.1 Score=38.13 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.8
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||+| .+......
T Consensus 21 ~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999 88887653
No 268
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=69.63 E-value=2.8 Score=40.69 Aligned_cols=18 Identities=44% Similarity=0.724 Sum_probs=14.3
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+..+
T Consensus 12 gGvGKTt~a~~LA~~la~~ 30 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQK 30 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 899999999 777765543
No 269
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=69.62 E-value=2.8 Score=42.14 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=14.2
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 50 GGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHC
Confidence 899999999 777655543
No 270
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=69.10 E-value=2.9 Score=42.50 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.6
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 23 GGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARS 41 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHC
Confidence 999999999 777765555
No 271
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.84 E-value=2.2 Score=41.77 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
++|+|||||| ++++.....
T Consensus 52 ~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 52 PPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp SSCSSHHHHHHHHHHHHTCC
T ss_pred CCCCcHHHHHHHHHHHhCCC
Confidence 4799999999 998876443
No 272
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=68.70 E-value=3 Score=40.66 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=17.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+..+=..++-|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 899999999 77776554422333443
No 273
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=68.68 E-value=3 Score=41.64 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
||+||||+| .+...+..
T Consensus 46 GGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp SSSSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 899999999 77765543
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=68.57 E-value=1.9 Score=40.15 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=13.9
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.++..
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 4799999999 8877654
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=68.21 E-value=2.2 Score=39.25 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 5799999999 877654
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=68.09 E-value=1.9 Score=39.31 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 887664
No 277
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=68.01 E-value=2 Score=38.95 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 12 ~~GsGKsTla~~La~~l 28 (175)
T 1via_A 12 FMGSGKSTLARALAKDL 28 (175)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 5799999999 887764
No 278
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=67.80 E-value=2.7 Score=40.96 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.4
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 16 GGvGKTt~a~~LA~~la~~ 34 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARL 34 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHC
Confidence 899999999 777765544
No 279
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=67.67 E-value=3.2 Score=39.33 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.2
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...++++
T Consensus 11 gGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 899999999 777655443
No 280
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.43 E-value=3.9 Score=37.01 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=15.3
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|+|||||+ ++...++.+
T Consensus 12 ~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhHhc
Confidence 3699999999 888876654
No 281
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=67.38 E-value=41 Score=31.94 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| .+.++.
T Consensus 16 ~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKF 32 (230)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777653
No 282
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=67.36 E-value=3.3 Score=41.17 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=14.4
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+...+...
T Consensus 14 GGvGKTT~a~nLA~~La~~ 32 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYG 32 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 899999999 777765544
No 283
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=67.00 E-value=3.6 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...=..++-|.
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999999 77766555433444443
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.20 E-value=1.9 Score=39.80 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||+ ++..+..
T Consensus 9 PSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 5799999999 7766543
No 285
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=66.04 E-value=4.1 Score=37.97 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCCCcHHHHH-HHHHHhhccC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF 20 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F 20 (715)
+.|+||||+| .+.++.....
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 4799999999 8887665433
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=65.95 E-value=3.9 Score=39.16 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=18.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++.......=...+|+.
T Consensus 31 ~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4799999999 77665443334566665
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=65.70 E-value=2.6 Score=39.22 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+....
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 877764
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.23 E-value=2.7 Score=40.97 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||| ++..+.
T Consensus 9 ~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQET 25 (253)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhcC
Confidence 5799999999 887754
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=65.05 E-value=2.7 Score=37.91 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+....
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777654
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=65.05 E-value=2.5 Score=38.84 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.2
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+|||||+ .+...
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 5799999999 77654
No 291
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=64.91 E-value=2.4 Score=39.80 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHhCCCcchhHHhhhcccCCChhHHHHHHHHhhccC
Q 005085 133 AVHYAKGNPLALQVLGSSFYGKSKPDWVNALNNLKRIS 170 (715)
Q Consensus 133 i~~~c~glPLai~~~g~~L~~k~~~~w~~~l~~l~~~~ 170 (715)
|...|-..|.-...-|.-+...+.+.|++...+++..+
T Consensus 171 i~~f~F~~~~p~~~~g~p~~~~~~~~wk~ff~~~~~~l 208 (212)
T 1tue_A 171 ITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRL 208 (212)
T ss_dssp CEEEECCSCCCBCTTSCBSCCCCHHHHHHHHHHHTGGG
T ss_pred EEEEEcCCCCCCCCCCCeeEEeCcchHHHHHHHHHHhc
Confidence 33333344444444454455668889999999887754
No 292
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=64.83 E-value=2.7 Score=36.82 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=13.0
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
.|+|||++| ++++..
T Consensus 33 ~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 33 PGTGRMTGARYLHQFG 48 (145)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhC
Confidence 799999999 888753
No 293
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.48 E-value=2.7 Score=40.90 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||| ++.+...
T Consensus 53 ~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcC
Confidence 4799999999 8888654
No 294
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=64.37 E-value=4 Score=41.95 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+.......
T Consensus 35 GGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SSTTHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHC
Confidence 999999999 776654443
No 295
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=63.76 E-value=3.7 Score=42.60 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=17.6
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...=..++.|.
T Consensus 153 GGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999999999 77766555423344444
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=63.49 E-value=4.4 Score=37.89 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.1
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|+||||+| .+.++....
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 4699999999 888876543
No 297
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.47 E-value=4.4 Score=41.67 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=19.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++...+...=..++|+.
T Consensus 71 ~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3799999999 77765544434677887
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.37 E-value=3.1 Score=37.39 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 15 ~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777654
No 299
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=63.27 E-value=3.5 Score=36.42 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=17.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
..|+|||||+ .++......=...+++.
T Consensus 44 ~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3699999999 88886554211145554
No 300
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=63.16 E-value=11 Score=37.65 Aligned_cols=17 Identities=29% Similarity=0.091 Sum_probs=13.5
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+||||++ .+....+
T Consensus 113 ~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISM 130 (296)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 7776554
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=62.90 E-value=3.1 Score=40.70 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.0
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+||||+| .+...+.
T Consensus 12 ~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 5899999999 8887643
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.71 E-value=3.3 Score=37.78 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777654
No 303
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=62.56 E-value=4.4 Score=38.06 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=16.8
Q ss_pred CCCcHHHHH-HHHHHhhccCCc
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEG 22 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~ 22 (715)
-|+||||++ .+.+.+.+.++.
T Consensus 11 dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp TTSCHHHHHHHHHHHHTTTSCE
T ss_pred CCCcHHHHHHHHHHHHHCCCCE
Confidence 599999999 999887665543
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=62.49 E-value=3.3 Score=38.70 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||++ .+....
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 5799999999 877665
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.11 E-value=4.7 Score=37.43 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|.||||+| .+....
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 4799999999 777655
No 306
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.06 E-value=9.5 Score=38.81 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=26.5
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHh
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVL 51 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~ 51 (715)
+|+||||+| .+...+..+=..++|++ . + .. ...+...+++...
T Consensus 55 pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-E----ms-~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALNDDRGVAVFS-L-E----MS-AEQLALRALSDLT 98 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCEEEEEE-S-S----SC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEe-C-C----CC-HHHHHHHHHHHhh
Confidence 799999999 77765544333455665 2 1 12 5666666665543
No 307
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=62.05 E-value=5.1 Score=40.76 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=14.7
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
||+||||+| .+.....+.
T Consensus 28 GGvGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp SSSSHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHHC
Confidence 899999999 777766554
No 308
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=61.85 E-value=3.1 Score=42.44 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=33.5
Q ss_pred cEEEcCCCCHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhCCCcchh
Q 005085 96 RIYEVEGLNCNEVLRLFSSCAFKENHCPEDLLKHSETAVHYAKGNPLAL 144 (715)
Q Consensus 96 ~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~~~~~i~~~c~glPLai 144 (715)
....+++.+.++-.+++.+.+-...... -++.+..|++++.|.|-.+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~~--~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVEI--EDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHTSTTCHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHhcCCChHHH
Confidence 4688999999999999987763211111 1356888999999998544
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.83 E-value=2.2 Score=38.95 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=9.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 13 ~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CC----CHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 5799999999 776653
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=61.81 E-value=3.6 Score=37.01 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 10 ARGCGMTTVGRELARAL 26 (173)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777654
No 311
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=61.80 E-value=5.2 Score=41.02 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=13.8
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.||+||||+| .+...+.
T Consensus 26 kGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 26 KGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 3999999999 7776655
No 312
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=61.65 E-value=4 Score=42.15 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=17.1
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...=..++-|.
T Consensus 11 GGvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999999 77766554322334443
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.51 E-value=3.5 Score=37.83 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777653
No 314
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=61.51 E-value=5 Score=40.49 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=13.0
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
|||||||.| .+.--+..
T Consensus 57 GGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 999999999 66654443
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=61.47 E-value=3.4 Score=37.73 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 4799999999 777654
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.26 E-value=3.5 Score=36.86 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 8 ~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777654
No 317
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=61.18 E-value=6.8 Score=37.48 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=18.2
Q ss_pred CCCCcHHHHH-HH-HHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VV-FNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~v-y~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++ ++...+.-..+++++
T Consensus 38 ~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3799999999 75 444444445566665
No 318
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.78 E-value=13 Score=42.65 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+||||+| .+.+.+
T Consensus 215 ~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 3799999999 888765
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=60.54 E-value=3.8 Score=38.06 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777654
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.53 E-value=3.8 Score=37.68 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777654
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=60.32 E-value=3.7 Score=37.57 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.4
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+.++
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999 77665
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.20 E-value=3.6 Score=37.14 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|.||||+| .+....
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 4799999999 776653
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=60.17 E-value=3.8 Score=38.70 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 12 ~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 5799999999 887654
No 324
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.71 E-value=3.9 Score=37.71 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 20 ~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777754
No 325
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=59.62 E-value=5.3 Score=37.73 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=17.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
..|+|||||+ .+.......=...+|+.
T Consensus 31 ~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp STTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3699999999 77765443323445554
No 326
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=59.40 E-value=6 Score=40.67 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=17.6
Q ss_pred CCCcHHHHH-HHHHHhh--ccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFS--QKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~--~~F~~~~wv~ 27 (715)
||+||||+| .+.-.+. ..=..++-|.
T Consensus 27 GGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 899999999 7777666 4333344443
No 327
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=59.36 E-value=3.9 Score=37.33 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||+ .+....
T Consensus 13 psGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 4699999999 777654
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=59.32 E-value=4 Score=37.91 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.0
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|.||||+| .+.....
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 8877654
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.29 E-value=3.5 Score=40.76 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.1
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|.|||||| .+.....
T Consensus 52 p~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 52 PPGCGKTLLAKAVANESG 69 (274)
T ss_dssp STTSCHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHHcC
Confidence 4799999999 8887644
No 330
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=59.28 E-value=3.8 Score=37.58 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.7
Q ss_pred CCCCcHHHHH-HHHH
Q 005085 1 MGGIGKTTIG-VVFN 14 (715)
Q Consensus 1 mgGiGKTTLa-~vy~ 14 (715)
+.|.|||||+ .+..
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 4799999999 7764
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=59.07 E-value=3.5 Score=39.07 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 13 ~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 13 APASGKGTQCELIKTKY 29 (222)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 887764
No 332
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.94 E-value=3.6 Score=47.52 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=14.3
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
..|+|||||| ++......
T Consensus 246 p~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 246 PPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHcCC
Confidence 4799999999 88776543
No 333
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=58.89 E-value=6.1 Score=36.73 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=19.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
-|+||||.+ .+++.++++-...++..
T Consensus 9 DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 499999999 99998776654444443
No 334
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.81 E-value=6 Score=40.56 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=19.2
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++...+...=..++|+.
T Consensus 69 ~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 69 PESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3799999999 77765544334567776
No 335
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=58.80 E-value=4 Score=40.80 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+||||+| ++.+.+..
T Consensus 75 ~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 75 NPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999 88886543
No 336
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=58.74 E-value=4.3 Score=37.91 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.0
Q ss_pred CCCCcHHHHH-HHHHHhhc-cCCc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-KFEG 22 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-~F~~ 22 (715)
+.|+||||+| .+.++... .++.
T Consensus 18 ~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4699999999 88876543 3444
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.69 E-value=4.1 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 5799999999 777653
No 338
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=58.29 E-value=4.3 Score=37.18 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.0
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.++..
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4799999999 8887654
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.22 E-value=3.6 Score=40.99 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++..+.
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 877653
No 340
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=58.14 E-value=3.4 Score=43.35 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.1
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+...+.
T Consensus 118 GGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 999999999 7766554
No 341
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=57.68 E-value=7.1 Score=35.80 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=12.5
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
.|+||||+| ++..+..
T Consensus 12 ~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 12 MYSGKTTELLSFVEIYK 28 (184)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 599999999 7766543
No 342
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=57.15 E-value=8.3 Score=41.01 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=18.4
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||+| ++...+..+=..++|++
T Consensus 205 ~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 205 RPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3799999999 77766544423455664
No 343
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=57.10 E-value=23 Score=37.33 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ .+...++..
T Consensus 105 ~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 4799999999 777665543
No 344
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.07 E-value=4.3 Score=40.50 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
.+|+||||+| ++.+..
T Consensus 58 ~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 888766
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=56.61 E-value=4.6 Score=37.90 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=12.7
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 776653
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.46 E-value=4.7 Score=36.83 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777654
No 347
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.45 E-value=4.8 Score=37.70 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||+ .+.....
T Consensus 16 psGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CTTSCHHHHHHHHHHSTT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 4799999999 8876544
No 348
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=56.27 E-value=4.9 Score=37.90 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777664
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=56.27 E-value=4.8 Score=37.38 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=12.6
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+.++
T Consensus 23 ~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKD 38 (203)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999 77765
No 350
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=56.19 E-value=4.8 Score=36.79 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
..|+|||||+ .+....
T Consensus 8 ~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 3699999999 777654
No 351
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=56.13 E-value=4.8 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||+| .+.+....
T Consensus 8 ~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4699999999 88876543
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=55.81 E-value=4.9 Score=37.78 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.2
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+..+
T Consensus 8 ~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEK 23 (216)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999 77654
No 353
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=55.73 E-value=7.3 Score=40.22 Aligned_cols=27 Identities=22% Similarity=0.157 Sum_probs=19.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++...+...=..++|+.
T Consensus 82 ~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3799999999 77665544434677887
No 354
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=55.51 E-value=5.1 Score=37.66 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777654
No 355
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=55.18 E-value=8.4 Score=36.67 Aligned_cols=27 Identities=15% Similarity=0.007 Sum_probs=18.2
Q ss_pred CCCCcHHHHH-HHHHHhhc------cCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQ------KFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~------~F~~~~wv~ 27 (715)
.+|+|||||| .+...+.. .-...+|+.
T Consensus 32 ~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp CTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 4799999999 77664221 134567776
No 356
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=55.14 E-value=5.3 Score=37.92 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+..+.
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 5799999999 777654
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.64 E-value=4.8 Score=38.50 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 24 ~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 887764
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=54.41 E-value=5.4 Score=38.44 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||+ .+.++.
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 887654
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.40 E-value=5.2 Score=37.15 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.6
Q ss_pred CCCCcHHHHH-HHHH
Q 005085 1 MGGIGKTTIG-VVFN 14 (715)
Q Consensus 1 mgGiGKTTLa-~vy~ 14 (715)
+.|+||||+| .+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 4799999999 6665
No 360
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=53.89 E-value=8.5 Score=36.20 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.4
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
+|+|||||+ ++....
T Consensus 47 ~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 799999999 776653
No 361
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.87 E-value=5.3 Score=37.07 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||++ .+....
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 4799999999 776654
No 362
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=53.58 E-value=8.3 Score=38.29 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=18.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCC-ceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE-GKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~-~~~wv~ 27 (715)
..|+|||||+ .+...+...-. .++|+.
T Consensus 43 ~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3799999999 77776554333 344554
No 363
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=53.54 E-value=5.5 Score=36.93 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.2
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+|||||+ .+...
T Consensus 15 p~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKA 30 (205)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhh
Confidence 4699999999 77664
No 364
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.50 E-value=5.7 Score=37.21 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.8
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 4799999999 8877654
No 365
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=53.48 E-value=5.2 Score=41.45 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.1
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| ++.+...
T Consensus 80 p~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 4799999999 8887663
No 366
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=53.19 E-value=5.3 Score=41.16 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+|||++| ++.+..
T Consensus 59 ppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 59 PTGSGKTLLAETLARLL 75 (363)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 4799999999 888776
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.14 E-value=5.4 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 4699999999 777654
No 368
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.91 E-value=16 Score=38.75 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCCCcHHHHH-HHHHHhhcc-CCceEEEEecchhhhcCCcHHHHHHHHHHHH
Q 005085 1 MGGIGKTTIG-VVFNQFSQK-FEGKYFMANVREESEKCGVLVHLRNQVLSKV 50 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~-F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~ 50 (715)
.+|+||||+| .+...+... =..++|++ .- .. ...+...++...
T Consensus 208 ~pg~GKT~lal~ia~~~a~~~g~~vl~~s-lE-----~~-~~~l~~R~~~~~ 252 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQNAALKEGVGVGIYS-LE-----MP-AAQLTLRMMCSE 252 (444)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCEEEEE-SS-----SC-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEE-CC-----CC-HHHHHHHHHHHH
Confidence 3799999999 777665432 23466665 21 12 556666666544
No 369
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.66 E-value=5.8 Score=36.30 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=14.7
Q ss_pred CCCCcHHHHH-HHHHHhhccC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF 20 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F 20 (715)
+.|+|||||+ .+.......|
T Consensus 9 psGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp SSSSSHHHHHHHHHHHCGGGE
T ss_pred CCCCCHHHHHHHHHhhCCccc
Confidence 4699999999 7776654333
No 370
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=52.58 E-value=14 Score=40.00 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=27.5
Q ss_pred CCCCcHHHHH-HHHHHhhcc-CCceEEEEecchhhhcCCcHHHHHHHHHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQFSQK-FEGKYFMANVREESEKCGVLVHLRNQVLSKVL 51 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~-F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~ 51 (715)
.+|+|||||| ++...+... =..++|++ .-. . ..++.+.++....
T Consensus 250 ~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~E~-----s-~~~l~~r~~~~~~ 295 (503)
T 1q57_A 250 GSGMVMSTFVRQQALQWGTAMGKKVGLAM-LEE-----S-VEETAEDLIGLHN 295 (503)
T ss_dssp SSCHHHHHHHHHHHHHHTTTSCCCEEEEE-SSS-----C-HHHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHHHhcCCcEEEEe-ccC-----C-HHHHHHHHHHHHc
Confidence 3799999999 877765543 23566776 211 2 5566666655443
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=52.18 E-value=10 Score=35.54 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.3
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+|||||+ ++.......
T Consensus 38 ~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp CTTSCHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHhccC
Confidence 3799999999 777664444
No 372
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=52.16 E-value=8.8 Score=40.59 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.0
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.||+||||+| .+....+.+
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 4899999999 777766554
No 373
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.11 E-value=12 Score=42.86 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.2
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||++| ++.+...
T Consensus 529 p~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 529 PTGVGKTELARALAESIF 546 (758)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 4799999999 8888753
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.07 E-value=10 Score=35.76 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=17.6
Q ss_pred CCCCcHHHHH-HHHHHhhc------cCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQ------KFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~------~F~~~~wv~ 27 (715)
..|+|||||+ .+...... .-...+|+.
T Consensus 33 ~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 3699999999 77664322 233466665
No 375
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=51.83 E-value=11 Score=34.29 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.8
Q ss_pred CCCcHHHHH-HHHHHhhc
Q 005085 2 GGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~ 18 (715)
.|+|||||+ ++......
T Consensus 15 sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 699999999 88876543
No 376
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=51.48 E-value=5.9 Score=41.03 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=18.4
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+.......=..+..|.
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 899999999 77766555433455555
No 377
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=51.42 E-value=9 Score=41.63 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchh
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREE 32 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~ 32 (715)
.|+|||+|+ .+.++.. -+.++++- +.+.
T Consensus 241 ~g~GKT~L~~~ia~~~~--~~v~V~~~-iGER 269 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKWSD--VDLVVYVG-CGER 269 (600)
T ss_dssp TTSCHHHHHHHHHHHSS--CSEEEEEE-EEEC
T ss_pred CCccHHHHHHHHHhccC--CCEEEEEE-eccc
Confidence 699999999 8877632 35566654 5544
No 378
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=51.18 E-value=16 Score=39.63 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=23.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHH
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQV 46 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i 46 (715)
.|+|||+|+ .+.++. +-+.++++- +.+..+ + +.++.+++
T Consensus 236 ~g~GKT~L~~~ia~~~--~~~~~V~~~-iGER~~--E-v~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWS--DAQVVIYIG-CGERGN--E-MTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHHS--SCSEEEEEE-CCSSSS--H-HHHHHHHT
T ss_pred CCCCHHHHHHHHHhcc--CCCEEEEEE-ecccHH--H-HHHHHHHH
Confidence 689999999 876652 234555554 555432 2 55555554
No 379
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.09 E-value=10 Score=38.07 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ .+....+..
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHhc
Confidence 3799999999 777765543
No 380
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=50.86 E-value=3 Score=36.44 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=12.5
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
.|+|||++| ++++..
T Consensus 36 ~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 36 AGSPFETVARYFHKNG 51 (143)
T ss_dssp TTCCHHHHHGGGCCTT
T ss_pred CCccHHHHHHHHHHhC
Confidence 699999999 777653
No 381
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=50.74 E-value=4.9 Score=41.10 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=15.4
Q ss_pred CCCCcHHHHH-HHHHHhhccC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKF 20 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F 20 (715)
|.|+||||+| .+.......|
T Consensus 32 ~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCe
Confidence 5899999999 8887654333
No 382
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=50.68 E-value=9.8 Score=37.33 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.0
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...=..++.|.
T Consensus 92 gG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 899999999 77776554433444554
No 383
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=50.67 E-value=10 Score=40.02 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ ++...++.+
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHC
Confidence 3799999999 877766554
No 384
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=50.50 E-value=10 Score=37.77 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ .+....+..
T Consensus 106 ~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 4799999999 777655543
No 385
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.25 E-value=6.9 Score=37.68 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=12.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+.++.
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 776553
No 386
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=50.24 E-value=9 Score=42.42 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=17.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+.....+.=..+..|.
T Consensus 17 GGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 899999999 77766554433344444
No 387
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=50.22 E-value=16 Score=38.89 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=18.2
Q ss_pred CCCcHHHHH-HHHHHhhcc-CCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQK-FEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~-F~~~~wv~ 27 (715)
+|+|||||| .+...+... =..++|++
T Consensus 212 pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 799999999 777765432 23566665
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=50.18 E-value=4.8 Score=39.11 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+||||+| .+....
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 4799999999 877654
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=50.09 E-value=10 Score=38.35 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ .+...++..
T Consensus 113 ~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 3899999999 777665543
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=49.96 E-value=6.6 Score=36.54 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||+ .+.....
T Consensus 27 PSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 4699999999 8776543
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=49.78 E-value=9.8 Score=36.37 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=16.7
Q ss_pred CCCCcHHHHH-HHHHHhh-ccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFS-QKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~-~~F~~~~wv~ 27 (715)
+.|+|||||+ .+..... ..=...+++.
T Consensus 38 pnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4799999999 7664222 2334455554
No 392
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=49.76 E-value=6.6 Score=34.37 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=11.2
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ ++..
T Consensus 12 ~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 12 GGVGKSALTIQLIQ 25 (166)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 799999999 7765
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=49.74 E-value=6.9 Score=35.41 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|.||||+| .+.....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 4799999999 7777653
No 394
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=49.71 E-value=6.7 Score=37.01 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.0
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+...
T Consensus 13 ~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999 66654
No 395
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.62 E-value=5.8 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
..|.|||||+ .+.....
T Consensus 30 ~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CTTSCTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 3699999999 7776554
No 396
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=49.60 E-value=12 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
..|+||||++ .+...+.
T Consensus 30 ~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 4799999999 7776543
No 397
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.40 E-value=6.4 Score=38.20 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
|.|.||||++ .+....
T Consensus 56 ~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSL 72 (250)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 5799999999 777654
No 398
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=49.23 E-value=7.4 Score=36.46 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=18.0
Q ss_pred cchHHHHHHhcCCeEEEEEeCccCChHHHH
Q 005085 61 KIPQYIRDRLQRMKVFIVLDDVNKDKTILE 90 (715)
Q Consensus 61 ~~~~~l~~~L~~kr~LlVLDDv~r~~~v~~ 90 (715)
-....+.+.+..... +|||..=|+..-|.
T Consensus 63 iv~~lv~~~l~~~~~-~ilDGfPRt~~Qa~ 91 (206)
T 3sr0_A 63 LIIALIEEVFPKHGN-VIFDGFPRTVKQAE 91 (206)
T ss_dssp HHHHHHHHHCCSSSC-EEEESCCCSHHHHH
T ss_pred HHHHHHHHhhccCCc-eEecCCchhHHHHH
Confidence 345667777765443 57898877655443
No 399
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=49.20 E-value=6.2 Score=36.74 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=11.6
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|.||||+| .+...
T Consensus 29 ~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKH 44 (207)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3699999999 66543
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=48.90 E-value=5.6 Score=37.14 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.1
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
.|+||||+| .+.....
T Consensus 9 ~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 599999999 8877654
No 401
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=48.87 E-value=5.9 Score=35.77 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=10.4
Q ss_pred CCCCcHHHHH-HHH
Q 005085 1 MGGIGKTTIG-VVF 13 (715)
Q Consensus 1 mgGiGKTTLa-~vy 13 (715)
+.|.|||||+ .++
T Consensus 17 ~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 17 SSGSGKSTFAKKHF 30 (171)
T ss_dssp CTTSCHHHHHHHHS
T ss_pred CCCCCHHHHHHHHc
Confidence 3699999999 643
No 402
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=48.81 E-value=12 Score=36.75 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=13.0
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+|||||| .+...+.
T Consensus 38 ~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 4799999999 7665443
No 403
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.71 E-value=5.8 Score=40.19 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.4
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.+|+|||+|| ++.+....
T Consensus 54 ~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 54 VPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHHhCC
Confidence 4799999999 88876543
No 404
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=48.33 E-value=3.7 Score=43.15 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=6.1
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
||+||||+| .+...+.
T Consensus 121 GGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 121 GGVSKTVSTVTLAHALR 137 (403)
T ss_dssp -------CHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 999999999 7666554
No 405
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=48.21 E-value=12 Score=37.06 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=18.3
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...=..++.|.
T Consensus 102 gG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 102 PSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 899999999 77776665433444554
No 406
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=48.09 E-value=8.4 Score=38.45 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=17.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+||||++ .+.......=....++.
T Consensus 106 ~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999999 77765554423334443
No 407
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=48.02 E-value=11 Score=37.51 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred CCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 2 GGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
||+||||+| .+...+...=..++.|.
T Consensus 114 gG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 899999999 77776554433344444
No 408
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.56 E-value=12 Score=37.46 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+||||++ .+....+.. ...+.+.
T Consensus 110 ~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp STTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 4799999999 777655443 4455554
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=47.54 E-value=15 Score=45.69 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=19.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
.+|+|||||| ++...+...=..++|++
T Consensus 740 ~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 740 PESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3699999999 87776554434566775
No 410
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=47.44 E-value=6.9 Score=36.37 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=11.2
Q ss_pred CCCCcHHHHH-HHHH
Q 005085 1 MGGIGKTTIG-VVFN 14 (715)
Q Consensus 1 mgGiGKTTLa-~vy~ 14 (715)
+.|.||||++ .+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 4799999999 6644
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=47.25 E-value=7.5 Score=38.64 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.4
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||+| ++.++
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999 77763
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=47.07 E-value=8 Score=39.05 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||| .+..+.
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 4799999999 887653
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=47.03 E-value=8.6 Score=36.66 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||++ .+.+....
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4799999999 88887654
No 414
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=46.97 E-value=8.2 Score=33.71 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=11.2
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ ++..
T Consensus 10 ~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 10 PNVGKSSLFNRLLK 23 (161)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC
Confidence 699999999 7765
No 415
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=46.91 E-value=7.8 Score=37.70 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
..|+|||++| ++++...
T Consensus 37 ~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CTTSCHHHHHHHHHHTST
T ss_pred CCCCcHHHHHHHHHHhcC
Confidence 3699999999 8887643
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=46.73 E-value=8.1 Score=35.59 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.0
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+...
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4699999999 76654
No 417
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=46.65 E-value=7.8 Score=41.04 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+||||+| ++......
T Consensus 58 ppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 5799999999 88876543
No 418
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=46.57 E-value=8.2 Score=35.77 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||+ .+....
T Consensus 12 psGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 4699999999 776643
No 419
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.44 E-value=8.1 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|.|||||+ .+.....
T Consensus 14 ~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 14 GTASGKTTLAQALARTLG 31 (211)
T ss_dssp STTSSHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 3699999999 7766543
No 420
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=46.41 E-value=7.9 Score=35.14 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=11.3
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ ++..
T Consensus 30 ~~~GKSsli~~l~~ 43 (190)
T 3con_A 30 GGVGKSALTIQLIQ 43 (190)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 799999999 7765
No 421
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=46.24 E-value=7.9 Score=41.48 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
++|+|||||| ++.++..
T Consensus 57 ppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 57 PPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 4799999999 9988654
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=46.22 E-value=8.9 Score=36.24 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.7
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
++|+||||.| .+.++
T Consensus 37 pPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5899999999 77765
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.83 E-value=8.6 Score=39.09 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.2
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||| .+..++
T Consensus 15 ptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKF 31 (340)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHHc
Confidence 4699999999 887764
No 424
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=44.94 E-value=9.1 Score=36.98 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+....
T Consensus 30 ~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLL 46 (252)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777654
No 425
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.80 E-value=8.3 Score=41.16 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.2
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+|||++| ++.+....
T Consensus 71 ppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 71 PPGTGKTALALAIAQELGS 89 (456)
T ss_dssp CTTSSHHHHHHHHHHHHCT
T ss_pred CCcCCHHHHHHHHHHHhCC
Confidence 5899999999 88887654
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=44.78 E-value=10 Score=34.95 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=12.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
..|+|||||+ .+....
T Consensus 9 ~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 3699999999 777644
No 427
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=44.76 E-value=21 Score=37.97 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=17.3
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv 26 (715)
.+|.||||++ ++...+...-...+.+
T Consensus 53 ~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 53 PAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 4799999999 8777654443333333
No 428
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.56 E-value=14 Score=37.00 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=17.5
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|+||||++ .+....+.. ...+.+.
T Consensus 108 ~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 3699999999 777755433 3445443
No 429
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=44.00 E-value=9.5 Score=34.88 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.5
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
.|+|||||. .+...
T Consensus 38 ~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 38 SGVGKSNLLSRFTRN 52 (191)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999 76653
No 430
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=43.92 E-value=6.9 Score=41.41 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=13.9
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
.+|+||||+| .+....+.
T Consensus 107 ~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CSSSSTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999 77765543
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=43.92 E-value=17 Score=34.19 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|+||||++ .+.+.....
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 4699999999 888876543
No 432
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.50 E-value=8.2 Score=41.37 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=17.4
Q ss_pred EEEcCCCCHHHHHHHHHhhh
Q 005085 97 IYEVEGLNCNEVLRLFSSCA 116 (715)
Q Consensus 97 ~~~l~~L~~~es~~LF~~~a 116 (715)
++.++.++.++..+++...+
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTT
T ss_pred cceeCCCCHHHHHHHHHHHH
Confidence 68999999999999998654
No 433
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=43.31 E-value=9.9 Score=33.40 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=11.2
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ ++..
T Consensus 14 ~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 14 GAVGKSSMIQRYCK 27 (168)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7765
No 434
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=43.15 E-value=16 Score=38.42 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
.+|+||||++ .+....+..
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 4899999999 777765544
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=43.10 E-value=10 Score=34.98 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=12.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| .+....
T Consensus 10 ~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 10 PSASGKSSVARRVAAAL 26 (208)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 4699999999 777654
No 436
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=43.08 E-value=11 Score=36.15 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.1
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|.||||+| .+..+.
T Consensus 17 ~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 17 PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4799999999 777654
No 437
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=43.08 E-value=9.4 Score=34.00 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=11.9
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
-|.|||||+ .+..-.
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 599999999 776643
No 438
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=42.93 E-value=13 Score=36.16 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=18.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
+.|.|||||+ .+...+...+...+.+.
T Consensus 33 p~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp STTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 3699999999 77765544445555543
No 439
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=42.67 E-value=10 Score=34.90 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
.|+|||||. .+..
T Consensus 14 ~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 14 SGVGKSNLLSRFTR 27 (199)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 699999999 7665
No 440
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=42.50 E-value=10 Score=37.72 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.3
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
..|+|||||| .+.....
T Consensus 39 ~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 3699999999 7776544
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=42.36 E-value=11 Score=36.15 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.7
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+||||+| .+.+...
T Consensus 10 ~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 3699999999 8877653
No 442
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=42.35 E-value=9 Score=41.95 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=14.6
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
++|+|||||| .+......
T Consensus 116 p~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SSSSSHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 4799999999 88886643
No 443
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=42.27 E-value=17 Score=37.22 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+|||||+ ++.....
T Consensus 87 ~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4899999999 7776543
No 444
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=42.25 E-value=11 Score=36.50 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.9
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|.||||++ .+.++.
T Consensus 35 ~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 35 PSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 4799999999 777653
No 445
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=42.25 E-value=9.4 Score=33.83 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=10.9
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 12 ~gvGKStL~~~l~~ 25 (165)
T 2wji_A 12 PNVGKSTIFNALTG 25 (165)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhC
Confidence 799999999 6654
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=42.24 E-value=11 Score=34.83 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=11.8
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+||||+| .+.+.
T Consensus 20 ~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 20 KIGTGKSTVCEILKNK 35 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4689999999 66554
No 447
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=42.20 E-value=9.1 Score=34.69 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=10.8
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ .+..
T Consensus 11 ~gvGKStLl~~l~~ 24 (184)
T 2zej_A 11 TGSGKTTLLQQLMK 24 (184)
T ss_dssp TTSSHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhc
Confidence 799999999 6554
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=42.19 E-value=24 Score=44.58 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=38.8
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecchhhhcCCcHHHHHHHHHHHHhCCCC-----CCCCC-cchHHHHHHhc-C
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVREESEKCGVLVHLRNQVLSKVLGENF-----DIGTQ-KIPQYIRDRLQ-R 72 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~~~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~-~~~~~l~~~L~-~ 72 (715)
++|+|||||| ++......+=...+|+. +.+.+ + .+. +...+.+-. ..+.. +....+++..+ .
T Consensus 1435 ppGtGKT~LA~ala~ea~~~G~~v~Fi~-~e~~~---~---~l~---a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1435 PESSGKTTLTLQVIAAAQREGKTCAFID-AEHAL---D---PIY---ARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCC---C---HHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEE-ccccc---C---HHH---HHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 5799999999 77766554434566776 33321 1 111 223331111 11111 33444444433 5
Q ss_pred CeEEEEEeCcc
Q 005085 73 MKVFIVLDDVN 83 (715)
Q Consensus 73 kr~LlVLDDv~ 83 (715)
+--+||+|.+.
T Consensus 1505 ~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1505 AVDVIVVDSVA 1515 (2050)
T ss_dssp CCSEEEESCGG
T ss_pred CCCEEEEcChh
Confidence 66799999996
No 449
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=41.96 E-value=11 Score=35.44 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.3
Q ss_pred CCCCcHHHHH-HHHH
Q 005085 1 MGGIGKTTIG-VVFN 14 (715)
Q Consensus 1 mgGiGKTTLa-~vy~ 14 (715)
+.|+||||+| .+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 4699999999 6654
No 450
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=41.95 E-value=7.5 Score=39.45 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||| ++..++
T Consensus 48 PTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 4699999999 777653
No 451
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.89 E-value=10 Score=35.38 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||+ .+..-.
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 3699999999 776644
No 452
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=41.81 E-value=9.9 Score=40.99 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.3
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||| ++.....
T Consensus 72 ppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 72 PPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SSSSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 4799999999 8888754
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=41.70 E-value=11 Score=37.74 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=12.6
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+|||||| ++..+
T Consensus 18 ptgsGKt~la~~La~~ 33 (316)
T 3foz_A 18 PTASGKTALAIELRKI 33 (316)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHh
Confidence 4699999999 88765
No 454
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=41.63 E-value=9.7 Score=34.42 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=11.2
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 16 ~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 16 PNVGKSTIFNALTG 29 (188)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 699999999 7765
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.62 E-value=8.2 Score=35.91 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=12.4
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
..|+|||||| ++..+
T Consensus 42 psGsGKStLA~~La~~ 57 (205)
T 2qmh_A 42 DSGVGKSETALELVQR 57 (205)
T ss_dssp CCTTTTHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3699999999 87765
No 456
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=41.56 E-value=11 Score=35.67 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=13.4
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
+.|+|||||. .+.....
T Consensus 24 psGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 4699999999 7776543
No 457
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=41.46 E-value=11 Score=35.60 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=12.5
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+|||||+ .+....
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 3599999999 776644
No 458
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=41.46 E-value=11 Score=37.90 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.4
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
+.|+|||||| .+..+
T Consensus 11 ptgsGKt~la~~La~~ 26 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHh
Confidence 4699999999 77765
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=41.41 E-value=25 Score=38.10 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=16.1
Q ss_pred CCCCcHHHHH-HHHHHhhccCC
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFE 21 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~ 21 (715)
++|.||||+| ++.......|-
T Consensus 43 lpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhhcCC
Confidence 5799999999 88877654443
No 460
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=41.04 E-value=11 Score=35.15 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=12.1
Q ss_pred CCCCcHHHHH-HHHHH
Q 005085 1 MGGIGKTTIG-VVFNQ 15 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~ 15 (715)
.+|+|||||+ ++...
T Consensus 20 ~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTD 35 (218)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 3799999999 77653
No 461
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=40.73 E-value=11 Score=34.11 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=11.4
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
+|+|||||. ++...
T Consensus 57 ~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 57 QNSGKTSLLTLLTTD 71 (193)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999 76653
No 462
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=40.49 E-value=11 Score=32.92 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 13 ~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 13 GGVGKSALTLQFMY 26 (168)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 699999999 7665
No 463
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=40.45 E-value=11 Score=36.15 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=12.3
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
..|.|||||+ .+...+
T Consensus 33 ~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELL 49 (245)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 3699999999 776643
No 464
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=40.01 E-value=12 Score=37.73 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=12.8
Q ss_pred CCCcHHHHH-HHHHHhh
Q 005085 2 GGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~ 17 (715)
.|+|||||+ .+.....
T Consensus 99 sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 99 VAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcc
Confidence 699999999 7776544
No 465
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=39.97 E-value=40 Score=32.03 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=11.7
Q ss_pred CCCcHHHHH-HHHHHh
Q 005085 2 GGIGKTTIG-VVFNQF 16 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~ 16 (715)
.|.|||.+| .+..+.
T Consensus 117 tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL 132 (237)
T ss_dssp SSTTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 599999999 665543
No 466
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=39.71 E-value=19 Score=36.41 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||++ .+....+.
T Consensus 137 ~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 3699999999 77765443
No 467
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=39.65 E-value=18 Score=37.14 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~ 27 (715)
..|+||||++ .+....+.. ...+.+.
T Consensus 165 ~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp CTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 3699999999 777765543 3444443
No 468
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=39.62 E-value=11 Score=38.22 Aligned_cols=18 Identities=44% Similarity=0.512 Sum_probs=14.3
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
=|+||||++ .+.+.....
T Consensus 16 dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 16 YGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp TTSSHHHHHHHHHSGGGCS
T ss_pred CCCCHHHHHHHHHHHhccC
Confidence 499999999 888776553
No 469
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=39.40 E-value=13 Score=32.61 Aligned_cols=13 Identities=38% Similarity=0.207 Sum_probs=11.0
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 9 ~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 9 DAAGKTTILYKLKL 22 (164)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7655
No 470
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=39.31 E-value=12 Score=33.69 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=11.4
Q ss_pred CCCCcHHHHH-HHHH
Q 005085 1 MGGIGKTTIG-VVFN 14 (715)
Q Consensus 1 mgGiGKTTLa-~vy~ 14 (715)
.+|+|||||+ ++..
T Consensus 15 ~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 15 DSQCGKTALLHVFAK 29 (184)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 3799999999 7665
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=39.08 E-value=13 Score=35.60 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=18.1
Q ss_pred CCCCcHHHHH-HHHHHhhc-cCCceEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQ-KFEGKYFM 26 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~-~F~~~~wv 26 (715)
+.|+||||++ .+.+.... .+...+..
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4699999999 88887654 34434433
No 472
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=38.86 E-value=13 Score=32.60 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++.+
T Consensus 12 ~~~GKssli~~l~~ 25 (167)
T 1c1y_A 12 GGVGKSALTVQFVQ 25 (167)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7765
No 473
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=38.78 E-value=19 Score=38.52 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=17.0
Q ss_pred CCCCcHHHHH-HHHHHhhccCCce
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGK 23 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~ 23 (715)
+.|+||||+| ++.++....|-..
T Consensus 47 lpGsGKSTia~~La~~l~~~~~~t 70 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLNFIGVPT 70 (469)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHHhccCCCc
Confidence 5799999999 8887765445433
No 474
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=38.74 E-value=14 Score=34.81 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=14.8
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||++ .+.+.+..
T Consensus 11 ~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3699999999 88887654
No 475
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=38.72 E-value=13 Score=32.68 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=11.0
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 15 ~~~GKssli~~l~~ 28 (170)
T 1z08_A 15 GCVGKTSLVLRYCE 28 (170)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7665
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=38.69 E-value=9.5 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCCCcHHHHH-HHHHHhhcc
Q 005085 1 MGGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~ 19 (715)
+.|+||||++ .+.+.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CC---CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 4699999999 988876553
No 477
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=38.54 E-value=11 Score=33.12 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 12 ~~~GKssli~~l~~ 25 (172)
T 2erx_A 12 GGVGKSSLVLRFVK 25 (172)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7765
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=38.53 E-value=11 Score=37.08 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=11.0
Q ss_pred CCCCcHHHHH-HHH
Q 005085 1 MGGIGKTTIG-VVF 13 (715)
Q Consensus 1 mgGiGKTTLa-~vy 13 (715)
+.|+||||+| .+.
T Consensus 83 ~~GSGKSTva~~La 96 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 4799999999 665
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=38.30 E-value=13 Score=32.58 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 12 ~~~GKssli~~l~~ 25 (170)
T 1ek0_A 12 AAVGKSSIVLRFVS 25 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 699999999 7665
No 480
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=38.14 E-value=14 Score=32.32 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=11.0
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 12 ~~~GKSsli~~l~~ 25 (167)
T 1kao_A 12 GGVGKSALTVQFVT 25 (167)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7665
No 481
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=38.09 E-value=31 Score=38.33 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=19.9
Q ss_pred CCCCcHHHHH-HHHHHhhccCCceEEEEecc
Q 005085 1 MGGIGKTTIG-VVFNQFSQKFEGKYFMANVR 30 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~~F~~~~wv~~v~ 30 (715)
++|.||||++ ++...+...-..++.+++-+
T Consensus 203 ppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 5899999998 66555443335567776433
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=38.06 E-value=13 Score=32.94 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.9
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 13 ~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 13 PGVGKTSLASLFAG 26 (175)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCccHHHHHHHHhc
Confidence 699999999 7654
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=38.06 E-value=12 Score=32.96 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=10.7
Q ss_pred CCCCcHHHHH-HHH
Q 005085 1 MGGIGKTTIG-VVF 13 (715)
Q Consensus 1 mgGiGKTTLa-~vy 13 (715)
.+|+|||||+ ++.
T Consensus 10 ~~~~GKSsli~~l~ 23 (169)
T 3q85_A 10 ESGVGKSTLAGTFG 23 (169)
T ss_dssp STTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 3699999999 664
No 484
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=37.75 E-value=12 Score=32.88 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=10.2
Q ss_pred CCCcHHHHH-HHH
Q 005085 2 GGIGKTTIG-VVF 13 (715)
Q Consensus 2 gGiGKTTLa-~vy 13 (715)
+|+|||||. ++.
T Consensus 11 ~~~GKSsli~~l~ 23 (166)
T 3q72_A 11 PGVGKSALARIFG 23 (166)
T ss_dssp TTSSHHHHHHHHC
T ss_pred CCCCHHHHHHHHc
Confidence 699999999 654
No 485
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=37.41 E-value=13 Score=33.01 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=11.6
Q ss_pred CCCcHHHHH-HHHHH
Q 005085 2 GGIGKTTIG-VVFNQ 15 (715)
Q Consensus 2 gGiGKTTLa-~vy~~ 15 (715)
.|+|||||. ++...
T Consensus 18 ~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 18 GGVGKSALTIQFIQS 32 (181)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999 77653
No 486
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=37.32 E-value=14 Score=32.40 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 15 ~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 15 TGVGKSSIMWRFVE 28 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7665
No 487
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=37.31 E-value=11 Score=39.51 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=12.8
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
+.|+||||+| ++..+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 5799999999 776643
No 488
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=37.25 E-value=13 Score=33.78 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++.+
T Consensus 32 ~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 32 DNAGKTTLLHMLKN 45 (190)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 699999999 7665
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=37.06 E-value=14 Score=33.42 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=11.2
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
.|.|||||+ +++-
T Consensus 35 NGsGKStll~ai~~ 48 (182)
T 3kta_A 35 NGSGKSNIGDAILF 48 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 599999999 7765
No 490
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=37.01 E-value=14 Score=32.83 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 17 ~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 17 SGVGKTSLMHRYVN 30 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 699999999 7665
No 491
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=36.95 E-value=14 Score=34.94 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.8
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||++ .+.+....
T Consensus 29 ~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 3699999999 88887654
No 492
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=36.83 E-value=14 Score=32.42 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 15 ~~~GKssli~~l~~ 28 (170)
T 1r2q_A 15 SAVGKSSLVLRFVK 28 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7765
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=36.79 E-value=15 Score=33.34 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=11.0
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ ++.+
T Consensus 29 ~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 29 LSSGKSALVHRYLT 42 (184)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 699999999 6655
No 494
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=36.76 E-value=14 Score=32.72 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.2
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||. ++..
T Consensus 24 ~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 24 MGVGKSCLLHQFTE 37 (179)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 699999999 7765
No 495
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=36.68 E-value=20 Score=36.56 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=17.7
Q ss_pred CCCCcHHHHH-HHHHHhhc--cC---Cce-EEEE
Q 005085 1 MGGIGKTTIG-VVFNQFSQ--KF---EGK-YFMA 27 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~--~F---~~~-~wv~ 27 (715)
..|+|||||+ .+...+.. .. ... +|+.
T Consensus 139 ~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 3699999999 77665421 11 234 7886
No 496
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=36.67 E-value=10 Score=40.95 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.6
Q ss_pred CCCCcHHHHH-HHHHHh
Q 005085 1 MGGIGKTTIG-VVFNQF 16 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~ 16 (715)
++|+|||+|| ++.+..
T Consensus 49 pPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CSSSSHHHHHHHGGGGB
T ss_pred CchHHHHHHHHHHHHHH
Confidence 4799999999 887765
No 497
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=36.62 E-value=21 Score=38.52 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=14.0
Q ss_pred CCCcHHHHH-HHHHHhhcc
Q 005085 2 GGIGKTTIG-VVFNQFSQK 19 (715)
Q Consensus 2 gGiGKTTLa-~vy~~~~~~ 19 (715)
+|+||||++ ++....+..
T Consensus 110 ~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 799999999 777655543
No 498
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=36.50 E-value=8.4 Score=39.14 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=13.8
Q ss_pred CCCCcHHHHH-HHHHHhh
Q 005085 1 MGGIGKTTIG-VVFNQFS 17 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~ 17 (715)
.+|+|||++| ++.+...
T Consensus 53 ~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGCTTHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHhCc
Confidence 3699999999 8887643
No 499
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=36.43 E-value=15 Score=33.34 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=11.1
Q ss_pred CCCcHHHHH-HHHH
Q 005085 2 GGIGKTTIG-VVFN 14 (715)
Q Consensus 2 gGiGKTTLa-~vy~ 14 (715)
+|+|||||+ ++.+
T Consensus 30 ~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 30 RGAGKSALTVKFLT 43 (187)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh
Confidence 699999999 7665
No 500
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=36.40 E-value=16 Score=34.47 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=15.0
Q ss_pred CCCCcHHHHH-HHHHHhhc
Q 005085 1 MGGIGKTTIG-VVFNQFSQ 18 (715)
Q Consensus 1 mgGiGKTTLa-~vy~~~~~ 18 (715)
+.|+||||++ .+.+....
T Consensus 13 ~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 4699999999 88887665
Done!