BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005087
         (715 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
            (isolate 3D7) GN=PF13_0198 PE=3 SV=1
          Length = 3130

 Score = 41.6 bits (96), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 63/97 (64%), Gaps = 6/97 (6%)

Query: 551  EREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEE 610
            E+E+L++ +  KR  +E     Q++ +++ +E +RL ++K+ +  +  +++R++++RL++
Sbjct: 2779 EQERLQKEEALKRQEQERL---QKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQK 2835

Query: 611  IRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMA 647
                +++++E +  +E+++   R+E  +LE   I++A
Sbjct: 2836 EEALKRQEQERLQKEEELK---RQEQERLERKKIELA 2869



 Score = 33.5 bits (75), Expect = 6.7,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 480  QQDAEKPDSEGISSCETQCADRESKQERPCSTEVKQQVIGSMSNYQLDAGADVRRTQGVS 539
            +Q+ E+ + E     + +   +  +QER      K++ +      +L    +++R +   
Sbjct: 2755 RQEQERLEREKQEQLQKEEELKRQEQERL----QKEEALKRQEQERLQKEEELKRQEQER 2810

Query: 540  LTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLD 599
            L     + +  E E  ++  E +R  +EE   RQ Q ++Q EE  + ++++R E  ++  
Sbjct: 2811 LEREKQEQLQKEEELKRQ--EQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIEL 2868

Query: 600  MERRQ--KQRLEE-----IRE--TQKKDEENMNLKEKIRIEVRKELCK 638
             ER Q  K +LE      I++  T++KDE   N   K+R  + ++  K
Sbjct: 2869 AEREQHIKSKLESDMVKIIKDELTKEKDEIIKNKDIKLRHSLEQKWLK 2916


>sp|Q2JIF8|ATPF_SYNJB ATP synthase subunit b OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=atpF PE=3 SV=1
          Length = 187

 Score = 41.2 bits (95), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 553 EKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAES----MRLLDMERRQKQRL 608
           E+L++ ++ KR   E  A  Q++L    +EA+R+RK+  A +      LL+   R+ +RL
Sbjct: 71  EELRQAEQRKREAIERLAEEQQKLAQAQQEAERIRKQAEANAEARRQELLEQAEREVERL 130

Query: 609 EEIRETQKKDEENMNLKEKIRIEVRKELCKLE 640
               E +   E+    +E  R  VR+ L K+E
Sbjct: 131 RANAEKELSSEQERVFQELRRQIVRQALSKVE 162


>sp|Q2JSV9|ATPF_SYNJA ATP synthase subunit b OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=atpF PE=3 SV=1
          Length = 180

 Score = 37.7 bits (86), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 553 EKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAES----MRLLDMERRQKQRL 608
           E+L++ ++ K+   E  A  Q++L    +EA+R+RK+  A +      LL    R+ +RL
Sbjct: 64  EELRQAEQRKQEAIERLAEEQQKLAQAQQEAERIRKQAEANAEARRQELLQQAEREIERL 123

Query: 609 EEIRETQKKDEENMNLKEKIRIEVRKELCKLE 640
               E     E+   L+E  R  VR+ L K+E
Sbjct: 124 RANAERDLSAEQEQILQELRRQIVRQALSKVE 155


>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
            (isolate 3D7) GN=Rh2b PE=3 SV=1
          Length = 3179

 Score = 36.6 bits (83), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 551  EREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEE 610
            E+E+L++ +E KR  E+E   R++Q Q+Q EE  R +++++ +   + ++E ++K   E 
Sbjct: 2667 EQERLQKEEELKR-QEQERLEREKQEQLQKEEELRKKEQEKQQQRNIQELEEQKKP--EI 2723

Query: 611  IRETQKKDEENMNLKEKIRIEVRKELCKLETT 642
            I E   K ++ +   ++  +E+ K    ++ T
Sbjct: 2724 INEALVKGDKILEGSDQRNMELSKPNVSMDNT 2755


>sp|Q9VMA7|TGO1_DROME Transport and Golgi organization protein 1 OS=Drosophila
           melanogaster GN=Tango1 PE=1 SV=2
          Length = 1430

 Score = 33.1 bits (74), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 550 NEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLE 609
           N  ++L+E  E +R + E  A  Q++LQ +A++ +RL+++  A + RLL+ E  Q++RL+
Sbjct: 492 NYYKQLQEEQEKQRLVAE--AEEQKRLQEEADQQKRLQEEA-ALNKRLLE-EAEQQKRLQ 547

Query: 610 EIRETQKKDEENMNLKEKIRIEVRKE 635
           E  E QK+ +E   L +++  E  K+
Sbjct: 548 EEAEQQKRLQEEAELNKRLLEEAEKQ 573


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.126    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,848,678
Number of Sequences: 539616
Number of extensions: 11507598
Number of successful extensions: 51433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 1123
Number of HSP's that attempted gapping in prelim test: 42965
Number of HSP's gapped (non-prelim): 6685
length of query: 715
length of database: 191,569,459
effective HSP length: 125
effective length of query: 590
effective length of database: 124,117,459
effective search space: 73229300810
effective search space used: 73229300810
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)