Query 005087
Match_columns 715
No_of_seqs 137 out of 273
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 17:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.7 3.2E-18 7E-23 179.3 6.7 56 647-711 4-59 (371)
2 KOG0713 Molecular chaperone (D 99.6 2.6E-16 5.6E-21 163.2 6.4 57 646-711 15-71 (336)
3 PRK14288 chaperone protein Dna 99.6 1.6E-15 3.4E-20 157.0 6.6 56 647-711 3-58 (369)
4 KOG0712 Molecular chaperone (D 99.5 3.9E-15 8.5E-20 154.8 4.4 54 646-711 3-56 (337)
5 PRK14296 chaperone protein Dna 99.5 6.3E-15 1.4E-19 152.9 5.7 54 648-711 5-58 (372)
6 PRK14286 chaperone protein Dna 99.5 2.5E-14 5.5E-19 148.3 6.6 55 648-711 5-59 (372)
7 PRK14279 chaperone protein Dna 99.5 2.6E-14 5.7E-19 149.2 6.6 56 647-711 9-64 (392)
8 PRK14282 chaperone protein Dna 99.5 6.7E-14 1.5E-18 144.6 6.6 57 648-712 5-61 (369)
9 PRK14285 chaperone protein Dna 99.5 6.9E-14 1.5E-18 144.7 6.6 56 647-711 3-58 (365)
10 PRK14277 chaperone protein Dna 99.5 7.1E-14 1.5E-18 145.4 6.5 57 647-712 5-61 (386)
11 smart00271 DnaJ DnaJ molecular 99.5 1.8E-13 3.8E-18 105.7 7.0 57 648-712 2-58 (60)
12 PRK14295 chaperone protein Dna 99.5 7.6E-14 1.7E-18 145.6 6.6 56 648-712 10-65 (389)
13 COG2214 CbpA DnaJ-class molecu 99.4 1.7E-13 3.7E-18 121.3 7.1 60 645-712 4-63 (237)
14 PRK14299 chaperone protein Dna 99.4 1.2E-13 2.5E-18 138.9 6.4 55 647-711 4-58 (291)
15 PRK14287 chaperone protein Dna 99.4 1.1E-13 2.5E-18 143.4 6.3 54 648-711 5-58 (371)
16 PRK14283 chaperone protein Dna 99.4 1.2E-13 2.7E-18 143.1 6.4 54 648-711 6-59 (378)
17 PRK14297 chaperone protein Dna 99.4 1.3E-13 2.9E-18 142.9 6.5 56 648-712 5-60 (380)
18 cd06257 DnaJ DnaJ domain or J- 99.4 3E-13 6.6E-18 102.5 6.7 54 648-710 1-54 (55)
19 PRK14276 chaperone protein Dna 99.4 1.4E-13 3E-18 143.0 6.4 56 647-712 4-59 (380)
20 PRK14301 chaperone protein Dna 99.4 1.5E-13 3.2E-18 142.7 6.5 56 647-711 4-59 (373)
21 PRK14294 chaperone protein Dna 99.4 1.6E-13 3.4E-18 141.8 6.6 55 648-711 5-59 (366)
22 PRK14284 chaperone protein Dna 99.4 1.5E-13 3.3E-18 143.1 6.5 55 648-711 2-56 (391)
23 PRK14278 chaperone protein Dna 99.4 1E-13 2.3E-18 144.0 5.2 55 647-711 3-57 (378)
24 PTZ00037 DnaJ_C chaperone prot 99.4 1.8E-13 3.9E-18 145.0 6.7 52 647-711 28-79 (421)
25 PRK10767 chaperone protein Dna 99.4 1.9E-13 4E-18 141.1 6.4 56 647-711 4-59 (371)
26 PRK14298 chaperone protein Dna 99.4 1.4E-13 3.1E-18 143.1 5.6 55 648-712 6-60 (377)
27 PF00226 DnaJ: DnaJ domain; I 99.4 5.4E-13 1.2E-17 104.9 7.1 56 648-711 1-56 (64)
28 PRK14281 chaperone protein Dna 99.4 2.3E-13 4.9E-18 142.3 6.4 56 648-712 4-59 (397)
29 PRK14291 chaperone protein Dna 99.4 2.4E-13 5.2E-18 141.3 6.6 55 648-712 4-58 (382)
30 PRK14280 chaperone protein Dna 99.4 2.6E-13 5.6E-18 140.8 6.5 54 648-711 5-58 (376)
31 KOG0717 Molecular chaperone (D 99.4 3.1E-13 6.7E-18 145.2 7.0 59 646-712 7-65 (508)
32 PRK10266 curved DNA-binding pr 99.4 4.1E-13 8.9E-18 135.6 6.3 56 646-711 3-58 (306)
33 PRK14290 chaperone protein Dna 99.4 4.3E-13 9.4E-18 138.5 6.6 58 647-712 3-60 (365)
34 PRK14292 chaperone protein Dna 99.4 4.7E-13 1E-17 138.1 5.8 57 646-712 1-57 (371)
35 KOG0691 Molecular chaperone (D 99.4 7.6E-13 1.6E-17 135.8 7.1 56 647-711 5-60 (296)
36 KOG0716 Molecular chaperone (D 99.4 7.7E-13 1.7E-17 134.8 6.9 55 648-711 32-86 (279)
37 PRK14300 chaperone protein Dna 99.4 8.9E-13 1.9E-17 136.7 6.6 55 647-711 3-57 (372)
38 PRK14289 chaperone protein Dna 99.3 9.8E-13 2.1E-17 136.6 6.6 55 648-711 6-60 (386)
39 PRK14293 chaperone protein Dna 99.3 2.8E-12 6.1E-17 132.9 6.4 56 647-712 3-58 (374)
40 PRK09430 djlA Dna-J like membr 99.3 7.6E-12 1.6E-16 125.6 7.8 64 644-711 197-262 (267)
41 KOG0715 Molecular chaperone (D 99.2 7.2E-12 1.6E-16 127.4 6.0 56 646-711 42-97 (288)
42 KOG0718 Molecular chaperone (D 99.2 1.1E-11 2.4E-16 133.8 6.8 60 647-712 9-68 (546)
43 PTZ00341 Ring-infected erythro 99.2 9.7E-12 2.1E-16 142.7 6.5 56 647-712 573-628 (1136)
44 PHA03102 Small T antigen; Revi 99.2 1.7E-11 3.7E-16 116.0 7.0 53 646-711 4-58 (153)
45 KOG0719 Molecular chaperone (D 99.2 1.9E-11 4E-16 123.5 5.9 63 642-711 9-71 (264)
46 PRK05014 hscB co-chaperone Hsc 99.2 4.5E-11 9.7E-16 113.5 7.0 63 648-712 2-64 (171)
47 PTZ00100 DnaJ chaperone protei 99.1 1.8E-10 3.9E-15 105.4 7.1 53 645-710 63-115 (116)
48 KOG0714 Molecular chaperone (D 99.1 6.4E-11 1.4E-15 110.7 4.2 58 646-711 2-59 (306)
49 KOG0550 Molecular chaperone (D 99.1 4.6E-10 9.9E-15 120.6 9.9 76 622-711 354-429 (486)
50 PRK01356 hscB co-chaperone Hsc 99.1 1.9E-10 4.2E-15 109.1 5.9 63 646-712 1-63 (166)
51 PRK03578 hscB co-chaperone Hsc 99.1 2.9E-10 6.2E-15 108.9 6.9 64 647-712 6-69 (176)
52 PRK00294 hscB co-chaperone Hsc 99.0 3.3E-10 7.2E-15 108.5 6.6 63 648-712 5-67 (173)
53 KOG0721 Molecular chaperone (D 99.0 3.9E-10 8.5E-15 112.8 6.4 54 648-710 100-153 (230)
54 TIGR03835 termin_org_DnaJ term 98.9 1.1E-09 2.3E-14 124.1 6.3 54 648-711 3-56 (871)
55 PHA02624 large T antigen; Prov 98.9 2.6E-09 5.6E-14 119.1 6.7 53 646-711 10-64 (647)
56 KOG0722 Molecular chaperone (D 98.9 1.4E-09 2.9E-14 111.7 4.0 56 646-711 32-87 (329)
57 KOG0624 dsRNA-activated protei 98.8 3.2E-08 7E-13 105.5 11.3 59 647-711 394-452 (504)
58 KOG0720 Molecular chaperone (D 98.8 3.9E-09 8.5E-14 114.1 4.5 56 646-711 234-289 (490)
59 COG5407 SEC63 Preprotein trans 98.6 4.7E-08 1E-12 106.3 5.1 59 648-710 99-157 (610)
60 KOG1789 Endocytosis protein RM 98.6 1.2E-07 2.5E-12 110.2 8.3 73 630-711 1265-1337(2235)
61 TIGR00714 hscB Fe-S protein as 98.5 1.9E-07 4E-12 88.1 6.3 50 663-712 3-52 (157)
62 TIGR02349 DnaJ_bact chaperone 98.5 1.6E-07 3.4E-12 96.9 5.2 34 648-685 1-34 (354)
63 PRK01773 hscB co-chaperone Hsc 98.3 6.4E-07 1.4E-11 86.2 6.0 65 646-712 1-65 (173)
64 KOG1150 Predicted molecular ch 98.0 1E-05 2.2E-10 81.6 5.7 59 643-710 50-108 (250)
65 COG5269 ZUO1 Ribosome-associat 97.7 5.1E-05 1.1E-09 79.4 5.4 66 642-711 38-103 (379)
66 KOG0431 Auxilin-like protein a 97.6 0.00023 5E-09 77.5 9.3 50 662-711 399-450 (453)
67 KOG0568 Molecular chaperone (D 97.0 0.002 4.3E-08 66.8 7.7 54 647-710 47-101 (342)
68 COG1076 DjlA DnaJ-domain-conta 97.0 0.00095 2.1E-08 63.7 5.0 59 647-709 113-173 (174)
69 KOG0723 Molecular chaperone (D 96.6 0.006 1.3E-07 56.8 6.6 68 626-714 43-110 (112)
70 PTZ00266 NIMA-related protein 93.5 0.62 1.4E-05 56.2 11.9 8 203-210 146-153 (1021)
71 KOG1029 Endocytic adaptor prot 93.4 0.61 1.3E-05 55.1 11.1 20 557-576 343-362 (1118)
72 PTZ00121 MAEBL; Provisional 92.8 0.94 2E-05 56.5 12.0 11 32-42 613-623 (2084)
73 PTZ00121 MAEBL; Provisional 91.8 1.2 2.5E-05 55.7 11.1 15 49-63 269-283 (2084)
74 KOG1029 Endocytic adaptor prot 91.0 1.8 4E-05 51.4 11.3 13 572-584 379-391 (1118)
75 COG1076 DjlA DnaJ-domain-conta 88.4 0.56 1.2E-05 45.1 4.0 45 667-711 19-63 (174)
76 PF10376 Mei5: Double-strand r 88.0 3.4 7.3E-05 42.3 9.4 83 560-658 127-216 (221)
77 PF13446 RPT: A repeated domai 78.9 8.1 0.00017 31.4 6.4 50 644-706 2-51 (62)
78 PLN03086 PRLI-interacting fact 77.7 12 0.00027 43.1 9.6 25 605-629 41-65 (567)
79 KOG2891 Surface glycoprotein [ 76.4 33 0.00071 37.5 11.6 7 495-501 272-278 (445)
80 KOG3223 Uncharacterized conser 76.3 27 0.00059 36.2 10.5 14 645-658 144-157 (221)
81 KOG0163 Myosin class VI heavy 75.6 25 0.00055 42.5 11.3 17 109-125 206-223 (1259)
82 KOG4661 Hsp27-ERE-TATA-binding 75.4 25 0.00054 41.3 11.1 10 322-331 364-373 (940)
83 KOG0681 Actin-related protein 74.5 11 0.00023 43.9 7.9 90 575-685 275-364 (645)
84 PF00038 Filament: Intermediat 74.2 1E+02 0.0022 31.5 14.1 25 558-582 182-206 (312)
85 PF09726 Macoilin: Transmembra 74.0 38 0.00081 40.0 12.3 55 539-596 470-527 (697)
86 KOG4661 Hsp27-ERE-TATA-binding 73.5 18 0.00039 42.4 9.3 13 603-615 660-672 (940)
87 PRK13454 F0F1 ATP synthase sub 72.8 1E+02 0.0022 30.3 15.4 41 625-674 136-177 (181)
88 PF06244 DUF1014: Protein of u 70.4 36 0.00078 32.5 9.2 29 646-675 54-83 (122)
89 PLN03086 PRLI-interacting fact 69.4 25 0.00054 40.7 9.4 24 597-620 41-64 (567)
90 KOG2891 Surface glycoprotein [ 68.1 22 0.00047 38.8 8.1 37 599-637 327-363 (445)
91 PF07946 DUF1682: Protein of u 66.4 18 0.00039 38.2 7.1 46 539-589 251-296 (321)
92 PF03656 Pam16: Pam16; InterP 64.1 19 0.0004 34.5 6.0 54 644-710 55-108 (127)
93 COG4372 Uncharacterized protei 63.2 1.1E+02 0.0023 35.0 12.3 100 536-635 71-180 (499)
94 COG0544 Tig FKBP-type peptidyl 62.6 82 0.0018 35.3 11.5 75 601-681 311-386 (441)
95 PRK00247 putative inner membra 61.2 23 0.00051 39.7 7.0 13 550-562 293-305 (429)
96 PF14687 DUF4460: Domain of un 61.2 17 0.00036 33.9 5.0 48 663-711 6-53 (112)
97 KOG2391 Vacuolar sorting prote 60.6 36 0.00078 37.7 8.1 42 595-636 228-269 (365)
98 PF14943 MRP-S26: Mitochondria 60.4 1E+02 0.0022 30.7 10.6 28 562-589 67-94 (170)
99 cd02042 ParA ParA and ParB of 59.8 8.6 0.00019 32.4 2.8 25 34-60 29-53 (104)
100 KOG4403 Cell surface glycoprot 59.8 84 0.0018 36.2 10.9 45 597-642 282-328 (575)
101 KOG4364 Chromatin assembly fac 59.5 81 0.0018 37.8 11.0 24 543-566 250-273 (811)
102 TIGR01069 mutS2 MutS2 family p 59.4 1.1E+02 0.0024 36.4 12.4 8 522-529 471-478 (771)
103 KOG1363 Predicted regulator of 59.3 36 0.00077 38.5 8.1 57 564-620 293-355 (460)
104 PF07897 DUF1675: Protein of u 59.3 10 0.00022 40.4 3.8 36 555-590 59-94 (284)
105 PLN02316 synthase/transferase 59.0 26 0.00056 43.1 7.4 24 569-592 261-284 (1036)
106 PRK09174 F0F1 ATP synthase sub 59.0 2.1E+02 0.0045 29.0 14.9 19 650-674 182-200 (204)
107 PRK08475 F0F1 ATP synthase sub 58.9 1.8E+02 0.0039 28.2 13.5 11 544-554 46-56 (167)
108 PTZ00491 major vault protein; 58.8 54 0.0012 39.8 9.8 68 572-643 674-743 (850)
109 PRK00106 hypothetical protein; 58.6 2E+02 0.0044 33.3 13.9 10 648-657 158-167 (535)
110 PRK08475 F0F1 ATP synthase sub 57.5 1.9E+02 0.0041 28.1 13.1 9 670-678 157-165 (167)
111 PRK10780 periplasmic chaperone 57.5 60 0.0013 31.1 8.2 45 545-589 25-72 (165)
112 PF09726 Macoilin: Transmembra 57.3 1E+02 0.0022 36.6 11.5 10 648-657 619-628 (697)
113 PRK12704 phosphodiesterase; Pr 56.2 1.8E+02 0.0038 33.3 12.9 10 648-657 143-152 (520)
114 KOG2002 TPR-containing nuclear 56.2 52 0.0011 40.5 9.1 10 546-555 805-814 (1018)
115 KOG0163 Myosin class VI heavy 55.7 1.1E+02 0.0023 37.6 11.3 19 689-707 1085-1103(1259)
116 KOG1144 Translation initiation 55.3 47 0.001 40.4 8.4 18 571-588 249-266 (1064)
117 PF07830 PP2C_C: Protein serin 54.3 39 0.00086 30.3 6.0 23 652-674 59-81 (81)
118 CHL00019 atpF ATP synthase CF0 53.2 1.6E+02 0.0035 28.6 10.5 11 544-554 48-58 (184)
119 PF04615 Utp14: Utp14 protein; 53.1 65 0.0014 37.6 9.1 17 565-581 198-214 (735)
120 PRK06231 F0F1 ATP synthase sub 52.9 2.6E+02 0.0056 28.2 12.9 11 544-554 72-82 (205)
121 TIGR03319 YmdA_YtgF conserved 52.2 3E+02 0.0065 31.5 13.8 16 564-579 55-70 (514)
122 PRK07352 F0F1 ATP synthase sub 51.5 1.8E+02 0.004 28.0 10.5 48 545-592 44-96 (174)
123 PF11600 CAF-1_p150: Chromatin 51.0 1.5E+02 0.0032 29.9 10.1 8 668-675 197-204 (216)
124 TIGR03545 conserved hypothetic 50.2 1E+02 0.0022 35.6 9.9 31 547-577 152-188 (555)
125 TIGR03319 YmdA_YtgF conserved 49.5 4.4E+02 0.0095 30.3 14.6 16 596-611 77-92 (514)
126 PRK03963 V-type ATP synthase s 48.1 2.7E+02 0.0058 27.0 12.6 13 567-579 28-40 (198)
127 TIGR03321 alt_F1F0_F0_B altern 47.8 3.1E+02 0.0068 27.9 12.0 10 545-554 30-39 (246)
128 PRK07352 F0F1 ATP synthase sub 47.2 2.7E+02 0.0059 26.8 11.9 17 572-588 51-67 (174)
129 PF12434 Malate_DH: Malate deh 47.0 17 0.00037 27.4 2.1 16 665-680 10-25 (28)
130 TIGR02680 conserved hypothetic 46.9 2.3E+02 0.005 35.9 12.9 29 601-629 923-951 (1353)
131 cd03111 CpaE_like This protein 46.6 21 0.00044 31.4 3.1 27 33-59 29-55 (106)
132 PF05597 Phasin: Poly(hydroxya 46.0 1.5E+02 0.0032 28.6 8.8 67 599-674 50-117 (132)
133 PF10454 DUF2458: Protein of u 45.9 49 0.0011 32.3 5.7 32 623-657 90-121 (150)
134 PRK12704 phosphodiesterase; Pr 45.7 2.5E+02 0.0054 32.2 11.9 14 566-579 63-76 (520)
135 PRK09510 tolA cell envelope in 45.3 1.3E+02 0.0027 33.8 9.3 27 572-601 81-107 (387)
136 COG4864 Uncharacterized protei 45.2 52 0.0011 35.1 6.2 53 597-658 256-308 (328)
137 PF06098 Radial_spoke_3: Radia 44.8 3E+02 0.0065 29.8 11.7 36 619-657 204-239 (291)
138 KOG4571 Activating transcripti 44.3 1.5E+02 0.0032 32.4 9.3 43 582-624 238-280 (294)
139 PRK06569 F0F1 ATP synthase sub 43.5 2.5E+02 0.0054 27.9 10.1 91 545-637 35-131 (155)
140 PRK14474 F0F1 ATP synthase sub 42.3 4.1E+02 0.0088 27.6 11.9 10 545-554 30-39 (250)
141 PF04037 DUF382: Domain of unk 42.2 19 0.0004 35.0 2.3 43 608-653 65-107 (129)
142 PRK06669 fliH flagellar assemb 42.0 3.4E+02 0.0073 28.1 11.3 8 667-674 194-201 (281)
143 PRK13455 F0F1 ATP synthase sub 41.9 3.1E+02 0.0066 26.7 10.4 68 570-639 57-124 (184)
144 PF07946 DUF1682: Protein of u 41.3 1.1E+02 0.0024 32.4 8.0 9 172-180 30-38 (321)
145 PF12072 DUF3552: Domain of un 41.0 3.8E+02 0.0082 26.7 13.3 10 648-657 139-148 (201)
146 KOG3192 Mitochondrial J-type c 40.6 83 0.0018 31.9 6.5 64 646-711 7-70 (168)
147 KOG1144 Translation initiation 40.2 2.6E+02 0.0055 34.7 11.2 21 560-580 231-251 (1064)
148 PF14738 PaaSYMP: Solute carri 40.0 2.2E+02 0.0047 28.2 9.1 54 566-621 86-139 (154)
149 PF12127 YdfA_immunity: SigmaW 39.9 73 0.0016 34.8 6.3 73 576-657 229-303 (316)
150 PRK13665 hypothetical protein; 39.7 96 0.0021 33.9 7.2 50 598-656 258-307 (316)
151 PF10168 Nup88: Nuclear pore c 39.4 2.5E+02 0.0055 33.5 11.1 60 560-623 554-617 (717)
152 PF10186 Atg14: UV radiation r 38.6 4.1E+02 0.0089 26.4 13.6 14 663-676 192-205 (302)
153 COG4741 Predicted secreted end 38.5 1.6E+02 0.0036 29.9 8.1 63 561-637 34-96 (175)
154 CHL00118 atpG ATP synthase CF0 37.9 3.6E+02 0.0079 25.6 12.1 10 545-554 47-56 (156)
155 KOG4691 Uncharacterized conser 37.7 3.8E+02 0.0083 28.3 10.7 34 547-580 95-130 (227)
156 PF05667 DUF812: Protein of un 37.0 2.8E+02 0.0061 32.5 10.8 54 603-657 444-498 (594)
157 PF12037 DUF3523: Domain of un 36.4 4.8E+02 0.01 28.3 11.6 12 559-570 92-103 (276)
158 TIGR01541 tape_meas_lam_C phag 36.3 4.8E+02 0.01 28.5 11.8 11 646-656 135-145 (332)
159 KOG4460 Nuclear pore complex, 35.6 1.5E+02 0.0033 35.2 8.3 116 560-685 577-696 (741)
160 PF04156 IncA: IncA protein; 35.4 4.1E+02 0.0088 25.5 13.3 31 585-615 120-150 (191)
161 PRK00106 hypothetical protein; 35.1 6.8E+02 0.015 29.3 13.3 16 564-579 76-91 (535)
162 PF15290 Syntaphilin: Golgi-lo 34.8 3E+02 0.0065 30.3 9.8 73 541-620 63-145 (305)
163 PF10186 Atg14: UV radiation r 34.1 4.8E+02 0.01 25.9 13.4 8 648-655 152-159 (302)
164 COG0711 AtpF F0F1-type ATP syn 34.1 4.4E+02 0.0096 25.5 10.2 67 571-639 37-103 (161)
165 PRK00247 putative inner membra 34.1 2.5E+02 0.0054 31.9 9.6 14 551-564 273-286 (429)
166 PRK08476 F0F1 ATP synthase sub 33.9 4.1E+02 0.009 25.1 10.7 13 543-555 30-42 (141)
167 PF01991 vATP-synt_E: ATP synt 33.3 4.2E+02 0.0091 25.0 11.0 79 575-653 1-81 (198)
168 KOG0994 Extracellular matrix g 33.2 4.6E+02 0.01 34.0 12.1 115 539-653 1584-1736(1758)
169 PF04111 APG6: Autophagy prote 33.1 6.4E+02 0.014 27.1 12.0 15 663-677 166-180 (314)
170 PRK13461 F0F1 ATP synthase sub 32.6 4.4E+02 0.0094 24.9 10.5 68 570-639 35-102 (159)
171 KOG0977 Nuclear envelope prote 32.1 1.8E+02 0.0039 34.0 8.3 12 664-676 375-386 (546)
172 PF02050 FliJ: Flagellar FliJ 32.1 3.1E+02 0.0066 23.0 11.3 94 552-645 18-116 (123)
173 PF07851 TMPIT: TMPIT-like pro 31.3 3E+02 0.0064 30.4 9.3 46 600-649 40-90 (330)
174 PRK13428 F0F1 ATP synthase sub 31.0 4E+02 0.0086 29.8 10.5 10 545-554 26-35 (445)
175 PF06936 Selenoprotein_S: Sele 30.2 1.8E+02 0.0039 29.7 7.0 24 600-623 92-115 (190)
176 PRK12705 hypothetical protein; 30.0 4.7E+02 0.01 30.3 11.0 77 557-640 60-136 (508)
177 KOG4673 Transcription factor T 29.3 6E+02 0.013 31.3 11.8 40 606-645 587-630 (961)
178 COG4191 Signal transduction hi 28.8 3.4E+02 0.0075 32.3 9.8 28 599-626 335-362 (603)
179 COG1422 Predicted membrane pro 28.8 71 0.0015 33.1 4.0 15 543-557 62-76 (201)
180 PF03938 OmpH: Outer membrane 28.8 4.7E+02 0.01 24.1 9.1 20 546-565 19-38 (158)
181 PRK06569 F0F1 ATP synthase sub 28.5 6E+02 0.013 25.3 11.6 45 570-614 40-84 (155)
182 TIGR03752 conj_TIGR03752 integ 28.3 4.4E+02 0.0096 30.6 10.3 43 568-617 70-116 (472)
183 TIGR00570 cdk7 CDK-activating 28.3 6.8E+02 0.015 27.6 11.3 19 668-686 267-285 (309)
184 KOG4364 Chromatin assembly fac 27.6 4.9E+02 0.011 31.8 10.7 8 678-685 417-424 (811)
185 PRK13454 F0F1 ATP synthase sub 27.5 6E+02 0.013 25.0 10.4 13 543-555 54-66 (181)
186 TIGR03825 FliH_bacil flagellar 27.5 6.9E+02 0.015 25.7 11.0 26 649-678 146-171 (255)
187 PRK01490 tig trigger factor; P 27.4 8.3E+02 0.018 26.6 14.2 49 626-680 337-385 (435)
188 KOG4807 F-actin binding protei 27.4 5.8E+02 0.013 29.6 10.9 46 545-590 325-372 (593)
189 KOG2412 Nuclear-export-signal 27.4 3.1E+02 0.0068 32.5 9.0 57 575-632 198-257 (591)
190 PF12037 DUF3523: Domain of un 27.4 8.3E+02 0.018 26.6 11.7 16 566-581 88-103 (276)
191 PF04796 RepA_C: Plasmid encod 27.4 86 0.0019 31.0 4.2 33 645-677 31-63 (161)
192 KOG2412 Nuclear-export-signal 26.9 2.7E+02 0.0058 33.0 8.4 10 608-617 250-259 (591)
193 KOG3654 Uncharacterized CH dom 26.8 2.9E+02 0.0063 32.7 8.6 25 599-623 439-463 (708)
194 TIGR02231 conserved hypothetic 26.8 6.6E+02 0.014 28.2 11.3 35 603-637 135-169 (525)
195 COG4026 Uncharacterized protei 26.4 4.1E+02 0.0089 28.7 9.0 66 545-614 134-199 (290)
196 PF12128 DUF3584: Protein of u 26.0 3.6E+02 0.0078 33.6 9.9 33 555-587 794-832 (1201)
197 PF00430 ATP-synt_B: ATP synth 26.0 3.9E+02 0.0085 23.7 7.8 6 547-552 26-31 (132)
198 PRK14475 F0F1 ATP synthase sub 25.9 6E+02 0.013 24.5 12.0 99 543-647 33-134 (167)
199 KOG0971 Microtubule-associated 25.8 7.8E+02 0.017 31.3 12.2 21 553-573 252-274 (1243)
200 KOG3915 Transcription regulato 25.5 5.6E+02 0.012 30.2 10.4 21 278-298 333-353 (641)
201 cd02038 FleN-like FleN is a me 25.4 69 0.0015 29.2 3.0 25 34-58 29-56 (139)
202 PF09304 Cortex-I_coil: Cortex 25.4 3.3E+02 0.0072 26.1 7.4 37 547-583 20-56 (107)
203 PRK14472 F0F1 ATP synthase sub 25.3 6.2E+02 0.013 24.4 12.1 10 545-554 43-52 (175)
204 PRK06568 F0F1 ATP synthase sub 25.0 6.8E+02 0.015 24.7 11.7 18 622-639 110-127 (154)
205 KOG1853 LIS1-interacting prote 24.6 8.1E+02 0.018 27.0 10.9 88 545-634 26-116 (333)
206 PHA00448 hypothetical protein 24.3 1E+02 0.0022 27.5 3.7 24 581-604 18-41 (70)
207 PF07767 Nop53: Nop53 (60S rib 23.8 3.2E+02 0.007 29.5 8.0 26 605-630 309-334 (387)
208 PF11932 DUF3450: Protein of u 23.6 7.9E+02 0.017 25.0 17.1 87 605-710 76-162 (251)
209 PF00769 ERM: Ezrin/radixin/mo 23.5 7.3E+02 0.016 25.8 10.2 22 689-710 174-195 (246)
210 TIGR03185 DNA_S_dndD DNA sulfu 23.5 1.1E+03 0.024 27.4 12.5 7 514-520 172-178 (650)
211 PF05914 RIB43A: RIB43A; Inte 23.4 1.1E+03 0.023 26.4 12.9 31 561-591 155-185 (379)
212 KOG3915 Transcription regulato 23.3 2.8E+02 0.0061 32.5 7.7 62 539-605 496-558 (641)
213 PRK13460 F0F1 ATP synthase sub 22.9 7E+02 0.015 24.1 12.1 10 545-554 41-50 (173)
214 PRK13453 F0F1 ATP synthase sub 22.8 7.1E+02 0.015 24.2 12.0 99 543-647 41-142 (173)
215 PRK06991 ferredoxin; Provision 22.8 3.8E+02 0.0082 28.5 8.1 23 569-591 147-169 (270)
216 KOG2441 mRNA splicing factor/p 22.6 1.4E+02 0.003 34.2 5.1 14 195-208 4-17 (506)
217 PRK06568 F0F1 ATP synthase sub 22.6 7.6E+02 0.016 24.4 12.9 11 545-555 29-39 (154)
218 PF12128 DUF3584: Protein of u 22.1 1.4E+03 0.029 28.9 13.6 26 567-592 659-684 (1201)
219 KOG3088 Secretory carrier memb 21.7 1.2E+02 0.0025 33.4 4.2 19 565-583 65-83 (313)
220 PF14931 IFT20: Intraflagellar 21.6 6.3E+02 0.014 24.1 8.5 57 574-634 48-105 (120)
221 COG4420 Predicted membrane pro 21.2 4.3E+02 0.0094 27.5 7.8 65 571-635 112-184 (191)
222 PRK10930 FtsH protease regulat 21.1 1.2E+03 0.027 26.3 12.1 10 589-598 278-287 (419)
223 KOG2072 Translation initiation 21.0 8.1E+02 0.017 30.8 11.0 16 175-190 296-311 (988)
224 PF09429 Wbp11: WW domain bind 20.9 5.7E+02 0.012 22.6 7.5 27 558-590 7-33 (78)
225 PRK10328 DNA binding protein, 20.9 6.2E+02 0.014 24.6 8.5 44 608-654 37-80 (134)
226 PTZ00436 60S ribosomal protein 20.7 5.3E+02 0.011 28.9 8.8 16 565-581 145-160 (357)
227 KOG2072 Translation initiation 20.3 8.8E+02 0.019 30.4 11.1 6 176-181 247-252 (988)
228 KOG2441 mRNA splicing factor/p 20.2 3.2E+02 0.0068 31.5 7.2 7 651-657 389-395 (506)
229 PF01839 FG-GAP: FG-GAP repeat 20.1 88 0.0019 23.6 2.1 17 36-52 5-21 (34)
230 PF05914 RIB43A: RIB43A; Inte 20.0 7.7E+02 0.017 27.5 10.0 38 568-605 191-228 (379)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.2e-18 Score=179.27 Aligned_cols=56 Identities=32% Similarity=0.489 Sum_probs=51.8
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||+.+ ||++||||||||||||||||||+++ ++||||||+|++|||||+-
T Consensus 4 ~dyYeiLGV~k~----As~~EIKkAYRkLA~kyHPD~n~g~-----~~AeeKFKEI~eAYEVLsD 59 (371)
T COG0484 4 RDYYEILGVSKD----ASEEEIKKAYRKLAKKYHPDRNPGD-----KEAEEKFKEINEAYEVLSD 59 (371)
T ss_pred cchhhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhCC
Confidence 478999999966 9999999999999999999999974 5899999999999999974
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.6e-16 Score=163.23 Aligned_cols=57 Identities=30% Similarity=0.469 Sum_probs=52.8
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+.++|++|||+.. |++.|||+||||||||||||||+++ +.|.++||+|+.|||||+-
T Consensus 15 ~rDfYelLgV~k~----Asd~eIKkAYRKLALk~HPDkNpdd-----p~A~e~F~~in~AYEVLsD 71 (336)
T KOG0713|consen 15 GRDFYELLGVPKN----ASDQEIKKAYRKLALKYHPDKNPDD-----PNANEKFKEINAAYEVLSD 71 (336)
T ss_pred CCCHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhcC
Confidence 5689999999965 9999999999999999999999987 4799999999999999974
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.6e-15 Score=157.04 Aligned_cols=56 Identities=30% Similarity=0.466 Sum_probs=50.9
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.+||++|||+++ ||++|||+|||||||+||||+++.+ .+|+++||+|++|||||+-
T Consensus 3 ~dyY~vLgv~~~----As~~eIkkayrkla~k~HPD~~~~~-----~~a~~~f~~i~~AYevLsd 58 (369)
T PRK14288 3 LSYYEILEVEKH----SNQETIKKSYRKLALKYHPDRNAGD-----KEAEEKFKLINEAYGVLSD 58 (369)
T ss_pred CChHHHcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCc-----cHHHHHHHHHHHHHHHhcc
Confidence 379999999976 9999999999999999999999854 3699999999999999984
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.9e-15 Score=154.76 Aligned_cols=54 Identities=33% Similarity=0.529 Sum_probs=50.4
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.+.||++|||++. ||++||||||||||||||||||++ |.||||+|+.|||||+-
T Consensus 3 ~~~~y~il~v~~~----As~~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 3 NTKLYDILGVSPD----ASEEEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSD 56 (337)
T ss_pred ccccceeeccCCC----cCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcC
Confidence 4679999999975 999999999999999999999996 78999999999999985
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=6.3e-15 Score=152.86 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=49.7
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+||++|||++. |+++|||+|||||||+||||+++. ..|+++||+|++|||||+-
T Consensus 5 dyY~~Lgv~~~----a~~~eik~ayrkla~~~HPD~n~~------~~a~~~F~~i~~AyevLsD 58 (372)
T PRK14296 5 DYYEVLGVSKT----ASEQEIRQAYRKLAKQYHPDLNKS------PDAHDKMVEINEAADVLLD 58 (372)
T ss_pred CHHHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHhcC
Confidence 79999999976 999999999999999999999974 2599999999999999984
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.5e-14 Score=148.27 Aligned_cols=55 Identities=29% Similarity=0.497 Sum_probs=50.6
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+||++|||++. ||.+|||+|||+||++||||+++.+ ++|+++|++|++|||||+-
T Consensus 5 d~y~~Lgv~~~----a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d 59 (372)
T PRK14286 5 SYYDILGVSKS----ANDEEIKSAYRKLAIKYHPDKNKGN-----KESEEKFKEATEAYEILRD 59 (372)
T ss_pred CHHHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHhcc
Confidence 79999999976 9999999999999999999999753 3699999999999999974
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.6e-14 Score=149.19 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=51.2
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. |+.+|||+||||||++||||+++++ ++|+++|++|++|||||+-
T Consensus 9 ~Dyy~~Lgv~~~----a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vLsD 64 (392)
T PRK14279 9 KDFYKELGVSSD----ASAEEIKKAYRKLARELHPDANPGD-----PAAEERFKAVSEAHDVLSD 64 (392)
T ss_pred cCHHHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHhcc
Confidence 489999999976 9999999999999999999999864 3699999999999999974
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.7e-14 Score=144.63 Aligned_cols=57 Identities=33% Similarity=0.505 Sum_probs=51.2
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. ||.+|||+|||+||++||||+++.+ +.+|+++||+|++|||||+-.
T Consensus 5 d~y~~lgv~~~----a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~ 61 (369)
T PRK14282 5 DYYEILGVSRN----ATQEEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDP 61 (369)
T ss_pred ChHHhcCCCCC----CCHHHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcCh
Confidence 79999999965 9999999999999999999999764 246999999999999999753
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.9e-14 Score=144.74 Aligned_cols=56 Identities=27% Similarity=0.494 Sum_probs=51.0
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. ||.+|||+|||+||++||||+++.+ .+|+++|++|++||+||+-
T Consensus 3 ~d~y~iLgv~~~----a~~~eIk~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d 58 (365)
T PRK14285 3 RDYYEILGLSKG----ASKDEIKKAYRKIAIKYHPDKNKGN-----KEAESIFKEATEAYEVLID 58 (365)
T ss_pred CCHHHhcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHcC
Confidence 379999999965 9999999999999999999999864 3699999999999999985
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=7.1e-14 Score=145.38 Aligned_cols=57 Identities=30% Similarity=0.448 Sum_probs=51.6
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||++. ||.+|||+||||||++||||+++.+ .+|+++||+|++|||||+-.
T Consensus 5 ~d~y~~Lgv~~~----a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~ 61 (386)
T PRK14277 5 KDYYEILGVDRN----ATEEEIKKAYRRLAKKYHPDLNPGD-----KEAEQKFKEINEAYEILSDP 61 (386)
T ss_pred CCHHHhcCCCCC----CCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhCCH
Confidence 379999999975 9999999999999999999999854 36999999999999999854
No 11
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.45 E-value=1.8e-13 Score=105.69 Aligned_cols=57 Identities=32% Similarity=0.491 Sum_probs=51.3
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|.+|||+++ ++.++||+|||++++++|||++.+. ...+++.|++|++||++|...
T Consensus 2 ~~y~vLgl~~~----~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 2 DYYEILGVPRD----ASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCC
Confidence 58999999976 9999999999999999999999863 357999999999999999753
No 12
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=7.6e-14 Score=145.63 Aligned_cols=56 Identities=27% Similarity=0.447 Sum_probs=51.1
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. |+++|||+|||+||++||||+++.+ .+|+++|++|++||+||+-.
T Consensus 10 d~y~~Lgv~~~----a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 10 DYYKVLGVPKD----ATEAEIKKAYRKLAREYHPDANKGD-----AKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred CHHHhcCCCCC----CCHHHHHHHHHHHHHHHCCCcCCCc-----hhHHHHHHHHHHHHHHHCch
Confidence 79999999975 9999999999999999999999764 36999999999999999753
No 13
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.7e-13 Score=121.33 Aligned_cols=60 Identities=32% Similarity=0.476 Sum_probs=53.8
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++.++|.+|||++. |+..+|++|||++|++||||+++.+.. .|+++|+.|++||+||+..
T Consensus 4 ~~~~~y~iLgv~~~----as~~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~ 63 (237)
T COG2214 4 DLLDYYEILGVPPN----ASLEEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDP 63 (237)
T ss_pred hhhhHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCH
Confidence 46789999999955 999999999999999999999997631 5999999999999999864
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.2e-13 Score=138.89 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=50.0
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. ||.+|||+|||+||++||||+++. ..|+++|++|++||+||+-
T Consensus 4 ~d~y~vLgv~~~----a~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d 58 (291)
T PRK14299 4 KDYYAILGVPKN----ASQDEIKKAFKKLARKYHPDVNKS------PGAEEKFKEINEAYTVLSD 58 (291)
T ss_pred CCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhcC
Confidence 379999999975 999999999999999999999973 3599999999999999974
No 15
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.1e-13 Score=143.40 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=49.5
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||+++ |+.+|||+|||+||++||||+++. .+|+++|++|++|||||+-
T Consensus 5 d~y~~Lgv~~~----a~~~eik~ayr~la~~~HpD~~~~------~~~~~~f~~i~~Ay~~L~d 58 (371)
T PRK14287 5 DYYEVLGVDRN----ASVDEVKKAYRKLARKYHPDVNKA------PDAEDKFKEVKEAYDTLSD 58 (371)
T ss_pred CHHHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCc
Confidence 79999999976 999999999999999999999873 3689999999999999974
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.2e-13 Score=143.11 Aligned_cols=54 Identities=30% Similarity=0.444 Sum_probs=49.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||+++ |+.+|||+|||+||++||||+++. .+|+++|++|++|||||+-
T Consensus 6 d~y~~Lgv~~~----a~~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~~Lsd 59 (378)
T PRK14283 6 DYYEVLGVDRN----ADKKEIKKAYRKLARKYHPDVSEE------EGAEEKFKEISEAYAVLSD 59 (378)
T ss_pred ChHHhhCCCCC----CCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhch
Confidence 79999999976 999999999999999999999974 2599999999999999975
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.3e-13 Score=142.89 Aligned_cols=56 Identities=29% Similarity=0.527 Sum_probs=51.2
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||+++ ||.+|||+|||+||++||||+++.+ .+|+++|++|++||+||+-.
T Consensus 5 d~y~~Lgv~~~----a~~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~ 60 (380)
T PRK14297 5 DYYEVLGLEKG----ASDDEIKKAFRKLAIKYHPDKNKGN-----KEAEEKFKEINEAYQVLSDP 60 (380)
T ss_pred ChHHhhCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcCH
Confidence 79999999976 9999999999999999999999864 36999999999999999853
No 18
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.43 E-value=3e-13 Score=102.52 Aligned_cols=54 Identities=33% Similarity=0.561 Sum_probs=49.2
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
++|++|||+.. ++.++||+|||+++++||||++.+. ..+++.|++|++||++|+
T Consensus 1 ~~y~vLgl~~~----~~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPD----ASDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhc
Confidence 47999999955 9999999999999999999999863 469999999999999996
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.4e-13 Score=142.98 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=50.5
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||+++ ||.+|||+||||||++||||+++.. .|+++|++|++|||||+..
T Consensus 4 ~d~y~~Lgv~~~----a~~~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~ 59 (380)
T PRK14276 4 TEYYDRLGVSKD----ASQDEIKKAYRKLSKKYHPDINKEP------GAEEKYKEVQEAYETLSDP 59 (380)
T ss_pred CCHHHhhCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhcCH
Confidence 379999999975 9999999999999999999999742 5899999999999999853
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.5e-13 Score=142.68 Aligned_cols=56 Identities=30% Similarity=0.490 Sum_probs=51.1
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||+++ ||.++||+|||+||++||||+++.+ .+|+++|++|++|||||+-
T Consensus 4 ~~~y~~Lgv~~~----a~~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d 59 (373)
T PRK14301 4 RDYYEVLGVSRD----ASEDEIKKAYRKLALQYHPDRNPDN-----PEAEQKFKEAAEAYEVLRD 59 (373)
T ss_pred CChHHhcCCCCC----CCHHHHHHHHHHHHHHhCCCcCCCC-----hHHHHHHHHHHHHHHHhcc
Confidence 379999999975 9999999999999999999999864 3699999999999999985
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.6e-13 Score=141.82 Aligned_cols=55 Identities=27% Similarity=0.461 Sum_probs=50.6
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||++. |+.+|||+||||||++||||+++.+ .+|+++|++|++||+||+.
T Consensus 5 d~y~~lgv~~~----a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~~f~~~~~Ay~vL~d 59 (366)
T PRK14294 5 DYYEILGVTRD----ASEEEIKKSYRKLAMKYHPDRNPGD-----KEAEELFKEAAEAYEVLSD 59 (366)
T ss_pred ChHHHhCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHhcc
Confidence 79999999975 9999999999999999999999864 3699999999999999985
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.5e-13 Score=143.13 Aligned_cols=55 Identities=27% Similarity=0.499 Sum_probs=50.5
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||++. ||++|||+|||+||++||||+++++ ..|+++||+|++||+||+-
T Consensus 2 d~y~iLgv~~~----a~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d 56 (391)
T PRK14284 2 DYYTILGVSKT----ASPEEIKKAYRKLAVKYHPDKNPGD-----AEAEKRFKEVSEAYEVLSD 56 (391)
T ss_pred CHHHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHhcC
Confidence 68999999975 9999999999999999999999864 3699999999999999974
No 23
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1e-13 Score=143.98 Aligned_cols=55 Identities=31% Similarity=0.393 Sum_probs=50.1
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.+||++|||+++ |+.+|||+|||+||++||||+++. ++|+++||+|++|||||+-
T Consensus 3 ~d~y~iLgv~~~----a~~~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d 57 (378)
T PRK14278 3 RDYYGLLGVSRN----ASDAEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSD 57 (378)
T ss_pred CCcceecCCCCC----CCHHHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhch
Confidence 379999999965 999999999999999999999973 3699999999999999974
No 24
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.42 E-value=1.8e-13 Score=144.99 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=47.3
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.+||++|||+++ ||.+|||||||||||+|||||++. +++|++|++|||||+-
T Consensus 28 ~d~Y~vLGV~~~----As~~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD 79 (421)
T PTZ00037 28 EKLYEVLNLSKD----CTTSEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSD 79 (421)
T ss_pred hhHHHHcCCCCC----CCHHHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhcc
Confidence 589999999976 999999999999999999999852 3799999999999974
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.9e-13 Score=141.08 Aligned_cols=56 Identities=32% Similarity=0.514 Sum_probs=50.8
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||+++ |+.+|||+||||||++||||+++++ ..|+++|++|++||+||+.
T Consensus 4 ~d~y~iLgv~~~----as~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d 59 (371)
T PRK10767 4 RDYYEVLGVSRN----ASEDEIKKAYRKLAMKYHPDRNPGD-----KEAEEKFKEIKEAYEVLSD 59 (371)
T ss_pred CChHHhcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCc-----HHHHHHHHHHHHHHHHhcc
Confidence 379999999976 9999999999999999999999754 3599999999999999975
No 26
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=1.4e-13 Score=143.11 Aligned_cols=55 Identities=27% Similarity=0.500 Sum_probs=50.1
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. |+.+|||+|||+||++||||+++. ..|+++|++|++|||||+-.
T Consensus 6 d~y~iLgv~~~----a~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~ 60 (377)
T PRK14298 6 DYYEILGLSKD----ASVEDIKKAYRKLAMKYHPDKNKE------PDAEEKFKEISEAYAVLSDA 60 (377)
T ss_pred CHHHhhCCCCC----CCHHHHHHHHHHHHHHhCccccCC------hhHHHHHHHHHHHHHHhcch
Confidence 79999999975 999999999999999999999874 25899999999999999853
No 27
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.41 E-value=5.4e-13 Score=104.94 Aligned_cols=56 Identities=32% Similarity=0.480 Sum_probs=51.2
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||++. ++.++||+||+++++++|||+++... ..|++.|+.|++||++|..
T Consensus 1 ~~y~iLgl~~~----~~~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~ 56 (64)
T PF00226_consen 1 NPYEILGLPPD----ASDEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSD 56 (64)
T ss_dssp HHHHHCTSTTT----SSHHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHCCCCCC----CCHHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCC
Confidence 58999999975 99999999999999999999998754 5799999999999999975
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.3e-13 Score=142.30 Aligned_cols=56 Identities=29% Similarity=0.503 Sum_probs=51.1
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. |+.+|||+||||||++||||+++.+ .+|+++|++|++|||||+-.
T Consensus 4 d~y~iLgv~~~----a~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~ 59 (397)
T PRK14281 4 DYYEVLGVSRS----ADKDEIKKAYRKLALKYHPDKNPDN-----KEAEEHFKEVNEAYEVLSND 59 (397)
T ss_pred ChhhhcCCCCC----CCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhhhh
Confidence 79999999966 9999999999999999999999864 36899999999999999854
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.4e-13 Score=141.29 Aligned_cols=55 Identities=31% Similarity=0.468 Sum_probs=50.2
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
+||++|||++. |+.++||+|||+||++||||+++. +.|+++|++|++||+||+-.
T Consensus 4 d~Y~~Lgv~~~----a~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vLsd~ 58 (382)
T PRK14291 4 DYYEILGVSRN----ATQEEIKKAYRRLARKYHPDFNKN------PEAEEKFKEINEAYQVLSDP 58 (382)
T ss_pred CHHHhhCCCCC----CCHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhcCH
Confidence 69999999976 999999999999999999999975 25899999999999999853
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.6e-13 Score=140.80 Aligned_cols=54 Identities=30% Similarity=0.461 Sum_probs=49.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||++. |+.+|||+|||+||++||||+++.. .|+++|++|++||+||+-
T Consensus 5 ~~y~iLgv~~~----a~~~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d 58 (376)
T PRK14280 5 DYYEVLGVSKS----ASKDEIKKAYRKLSKKYHPDINKEE------GADEKFKEISEAYEVLSD 58 (376)
T ss_pred ChHHhhCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhcc
Confidence 79999999976 9999999999999999999999742 599999999999999985
No 31
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.1e-13 Score=145.24 Aligned_cols=59 Identities=24% Similarity=0.451 Sum_probs=53.2
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
|.-+|++|||... |++.+||+|||||||+||||||+.. + ++|.+.|.+|++||+||+-+
T Consensus 7 ~~c~YE~L~v~~~----a~d~eik~~YRklALq~HPDknpd~-i---eeat~~F~~i~aAYeVLSdp 65 (508)
T KOG0717|consen 7 KRCYYEVLGVERD----ADDDEIKKNYRKLALQYHPDKNPDR-I---EEATQQFQLIQAAYEVLSDP 65 (508)
T ss_pred hhHHHHHhccccc----CCHHHHHHHHHHHHHhhCCCCCCcc-H---HHHHHHHHHHHHHHHHhcCh
Confidence 6679999999976 9999999999999999999998864 2 58999999999999999853
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.38 E-value=4.1e-13 Score=135.62 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=50.4
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+.++|++|||++. |+.+|||+|||+||++||||+++.. .|+++|++|++||++|+-
T Consensus 3 ~~d~y~~Lgv~~~----a~~~eik~ayr~la~k~HPD~~~~~------~~~~~f~~i~~Ay~~L~~ 58 (306)
T PRK10266 3 LKDYYAIMGVKPT----DDLKTIKTAYRRLARKYHPDVSKEP------DAEARFKEVAEAWEVLSD 58 (306)
T ss_pred cCChHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhhh
Confidence 3589999999976 9999999999999999999998642 599999999999999974
No 33
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.3e-13 Score=138.50 Aligned_cols=58 Identities=28% Similarity=0.435 Sum_probs=51.7
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||++. ||.+|||+|||+||++||||+++.+ +.+|+++|++|++||+||+-.
T Consensus 3 ~d~y~vLgv~~~----a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~ 60 (365)
T PRK14290 3 KDYYKILGVDRN----ASQEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDP 60 (365)
T ss_pred CChhhhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcCh
Confidence 379999999975 9999999999999999999999754 246999999999999999853
No 34
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=4.7e-13 Score=138.13 Aligned_cols=57 Identities=28% Similarity=0.472 Sum_probs=51.4
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
|.++|++|||++. ||.++||+|||+||++||||+++. ..|+++|++|++||+||+..
T Consensus 1 ~~d~y~~Lgv~~~----a~~~~ik~ayr~l~~~~hpD~~~~------~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 1 MMDYYELLGVSRT----ASADEIKSAYRKLALKYHPDRNKE------KGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred CCChHHHcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCC------hhHHHHHHHHHHHHHHhcch
Confidence 5589999999976 999999999999999999999973 36999999999999999853
No 35
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.6e-13 Score=135.85 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=51.9
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|.+|||..+ ||+++|+||||+.||+|||||||++. .|.++|..|++||+||.-
T Consensus 5 ~dyY~lLgi~~~----at~~eIkKaYr~kaL~~HPDKNp~dP-----~A~ekFq~L~eAy~VL~D 60 (296)
T KOG0691|consen 5 TDYYDLLGISED----ATDAEIKKAYRKKALQYHPDKNPGDP-----QAAEKFQELSEAYEVLSD 60 (296)
T ss_pred chHHHHhCCCCC----CCHHHHHHHHHHHHHhcCCCCCCCCh-----HHHHHHHHHHHHHHHhcC
Confidence 479999999965 99999999999999999999999874 599999999999999974
No 36
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.7e-13 Score=134.83 Aligned_cols=55 Identities=29% Similarity=0.493 Sum_probs=51.0
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+||++|||++. ||.++||||||+|||+||||+++++ ++|..+||+|+.||+||+-
T Consensus 32 ~LYdVLgl~k~----at~d~IKKaYR~L~~k~HPD~~gd~-----P~~~dkf~eIN~Ay~ILsD 86 (279)
T KOG0716|consen 32 DLYDVLGLPKT----ATKDEIKKAYRKLALKYHPDKNGDN-----PEATDKFKEINTAYAILSD 86 (279)
T ss_pred HHHHHhCCCcc----cchHHHHHHHHHHHHHhCCCcCCCC-----chhHHHHHHHHHHHHHhcC
Confidence 69999999964 9999999999999999999999975 3799999999999999974
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=8.9e-13 Score=136.69 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=49.8
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. ||.+|||+|||+||++||||+++.. .|+++|++|++||+||+-
T Consensus 3 ~~~y~iLgv~~~----as~~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d 57 (372)
T PRK14300 3 QDYYQILGVSKT----ASQADLKKAYLKLAKQYHPDTTDAK------DAEKKFKEINAAYDVLKD 57 (372)
T ss_pred CChHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhhh
Confidence 379999999965 9999999999999999999998742 489999999999999985
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=9.8e-13 Score=136.60 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=50.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||+++ ||.+|||+|||+||++||||+++++ ++|+++|++|++||+||+.
T Consensus 6 ~~y~~Lgv~~~----a~~~eik~ayr~la~~~HpD~~~~~-----~~a~~~f~~i~~Ay~~L~d 60 (386)
T PRK14289 6 DYYEVLGVSKT----ATVDEIKKAYRKKAIQYHPDKNPGD-----KEAEEKFKEAAEAYDVLSD 60 (386)
T ss_pred CHHHHcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCC-----hHHHHHHHHHHHHHHHhcC
Confidence 79999999966 9999999999999999999999864 3699999999999999975
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=2.8e-12 Score=132.92 Aligned_cols=56 Identities=30% Similarity=0.465 Sum_probs=50.4
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||+++ |+.++||+|||+||++||||+++.. .|+++|++|++||+||+..
T Consensus 3 ~d~y~vLgv~~~----a~~~eik~ayr~la~~~HPD~~~~~------~a~~~f~~i~~Ay~vL~~~ 58 (374)
T PRK14293 3 ADYYEILGVSRD----ADKDELKRAYRRLARKYHPDVNKEP------GAEDRFKEINRAYEVLSDP 58 (374)
T ss_pred CChhhhcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHHHHHHHhch
Confidence 379999999975 9999999999999999999998742 4889999999999999853
No 40
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.27 E-value=7.6e-12 Score=125.61 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=55.3
Q ss_pred ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--cccchHHHHHHHHHHHHHHHHhhh
Q 005087 644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKT--DVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~d--d~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++.++|++|||.++ +|.++||+|||+|+++||||++... +....+.|+++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~----as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSES----DDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCC----CCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999976 9999999999999999999998642 233456799999999999999974
No 41
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.2e-12 Score=127.36 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=51.5
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
..++|.+|||+.. ||..|||+||++||.+||||-+... .|+++|++|++|||||+.
T Consensus 42 ~~d~Y~vLgv~~~----At~~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd 97 (288)
T KOG0715|consen 42 KEDYYKVLGVSRN----ATLSEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSD 97 (288)
T ss_pred CcchhhhhCcCCC----CCHHHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcC
Confidence 3379999999966 9999999999999999999999875 699999999999999974
No 42
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.1e-11 Score=133.83 Aligned_cols=60 Identities=33% Similarity=0.468 Sum_probs=54.6
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.+||.+|+|+++ ||++|||+||||+++-|||||+.+.+ +++.||++|..|.+|||||+-.
T Consensus 9 ~e~Ya~LNlpkd----At~eeI~~AYrr~~~lfHPDkh~dpd--~K~~AE~~F~~i~~AyEVLsDp 68 (546)
T KOG0718|consen 9 IELYALLNLPKD----ATDEEIKKAYRRLSRLFHPDKHTDPD--QKKAAEEKFQRIQRAYEVLSDP 68 (546)
T ss_pred hhHHHHhCCCcc----cCHHHHHHHHHHHHHhcCCcccCChh--HHHHHHHHHHHHHHHHHHhcCh
Confidence 379999999976 99999999999999999999998654 5679999999999999999854
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.22 E-value=9.7e-12 Score=142.70 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=50.6
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||+++ ||.++||+|||||||+||||+++.+ .|+++|+.|++||+||+-.
T Consensus 573 ~dYYdILGVs~d----AS~~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp 628 (1136)
T PTZ00341 573 TLFYDILGVGVN----ADMKEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDI 628 (1136)
T ss_pred CChHHHcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCH
Confidence 479999999976 9999999999999999999999863 4888999999999999853
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.22 E-value=1.7e-11 Score=116.04 Aligned_cols=53 Identities=32% Similarity=0.476 Sum_probs=47.3
Q ss_pred HHHHHHHhCcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRP--LSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tA--T~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
...+|++|||+++ | |.++||+|||++|+++||||++ .+++|++|++||++|+.
T Consensus 4 ~~~l~~vLGl~~~----A~~s~~eIKkAYr~la~~~HPDkgg---------~~e~~k~in~Ay~~L~d 58 (153)
T PHA03102 4 SKELMDLLGLPRS----AWGNLPLMRKAYLRKCLEFHPDKGG---------DEEKMKELNTLYKKFRE 58 (153)
T ss_pred HHHHHHHcCCCCC----CCCCHHHHHHHHHHHHHHHCcCCCc---------hhHHHHHHHHHHHHHhh
Confidence 4589999999976 8 9999999999999999999964 24799999999999975
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.9e-11 Score=123.49 Aligned_cols=63 Identities=27% Similarity=0.496 Sum_probs=54.7
Q ss_pred hcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 642 TCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 642 ~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+.+.-.++|.+|||..+ ||+.+|++||+|+||+|||||++. ++.++|.++|+.|+.||.||+-
T Consensus 9 ~~f~~~d~YevLGVer~----a~~~eIrkAY~klal~~HPDk~~e---ed~~ea~~kFq~l~k~y~iLsD 71 (264)
T KOG0719|consen 9 GSFNKKDLYEVLGVERD----ATDKEIRKAYHKLALRLHPDKNHE---EDKVEATEKFQQLQKAYQILSD 71 (264)
T ss_pred ccccccCHHHHhhhccc----CCHHHHHHHHHHHHHHhCCCcchh---hhHHHHHHHHHHHHHHHHHhhH
Confidence 34444489999999965 999999999999999999999983 3468999999999999999963
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=4.5e-11 Score=113.53 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=55.7
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|.+|||++. .+++..+|+++||+++++|||||.+.....++..|++.|+.|++||++|+..
T Consensus 2 ~yf~llgl~~~--~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 2 DYFTLFGLPAR--YDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred CHHHHCCCCCC--CCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 58999999986 4688999999999999999999998766556777999999999999999853
No 47
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.09 E-value=1.8e-10 Score=105.43 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=46.4
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
...++|.+|||+++ ||.+||++|||+|+++||||+.. ..+.|++|++|||+|.
T Consensus 63 s~~eAy~ILGv~~~----As~~eIkkaYRrLa~~~HPDkgG---------s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPT----ASKERIREAHKQLMLRNHPDNGG---------STYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCC----CCHHHHHHHHHHHHHHhCCCCCC---------CHHHHHHHHHHHHHHh
Confidence 35689999999975 89999999999999999999842 2368999999999995
No 48
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.4e-11 Score=110.71 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=50.0
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+.++|.+|||+.. |+.++|++|||++||+||||+++.. . ..|+++|++|++||+||+.
T Consensus 2 ~~d~~~~l~i~~~----as~~~i~ka~~~~a~~~hpdk~~~~-~---~~~~~~~~~~~ea~~~ls~ 59 (306)
T KOG0714|consen 2 GKDYYKILGIARS----ASEEDIKKAYRKLALKYHPDKNPSP-K---EVAEAKFKEIAEAYEVLSD 59 (306)
T ss_pred cccHHHHhCcccc----ccHHHHHHHHHHHHHhhCCCCCCCc-h---hhHHHHHhhhhccccccCC
Confidence 4579999999954 8888999999999999999998765 2 3576799999999999874
No 49
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.6e-10 Score=120.57 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHH
Q 005087 622 MNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKL 701 (715)
Q Consensus 622 a~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKe 701 (715)
+..+..+| +++.+|+.-.+. ++|.+|||... |+..+|||||||+||.|||||+.+. |.+||.+||+
T Consensus 354 ~e~r~~l~-~A~~aLkkSkRk-----d~ykilGi~~~----as~~eikkayrk~AL~~Hpd~~ags----q~eaE~kFke 419 (486)
T KOG0550|consen 354 CEIRRTLR-EAQLALKKSKRK-----DWYKILGISRN----ASDDEIKKAYRKLALVHHPDKNAGS----QKEAEAKFKE 419 (486)
T ss_pred cchHHHHH-HHHHHHHHhhhh-----hHHHHhhhhhh----cccchhhhHHHHHHHHhCCCcCcch----hHHHHHHHHH
Confidence 33444443 344455533444 79999999965 9999999999999999999999986 6799999999
Q ss_pred HHHHHHHhhh
Q 005087 702 ISRMREKFLL 711 (715)
Q Consensus 702 ISeAYEVL~~ 711 (715)
|.+||.||+-
T Consensus 420 vgeAy~il~d 429 (486)
T KOG0550|consen 420 VGEAYTILSD 429 (486)
T ss_pred HHHHHHHhcC
Confidence 9999999974
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.06 E-value=1.9e-10 Score=109.08 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=53.5
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
|.+||++|||++. .+++..+|++|||+++++|||||+... .++..|.+.|..|++||++|+.+
T Consensus 1 ~~~yf~llgl~~~--f~id~~~L~~aYr~lq~~~HPDk~~~~--~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 1 MQNYFQLLGLPQE--YNIDLKILEKQYFAMQVKYHPDKAKTL--QEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred CCCHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCH--HHHHHHHHHHHHHHHHHHHhCCH
Confidence 4579999999986 568999999999999999999998753 23455777899999999999853
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=2.9e-10 Score=108.92 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=55.7
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||++. ..++..+|+++||+++++|||||++.....++..|.+.++.|+.||++|+.+
T Consensus 6 ~dyf~llglp~~--f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 6 DDHFSLFGLPAR--FALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CCHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 379999999986 5689999999999999999999998765555667888899999999999754
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.03 E-value=3.3e-10 Score=108.48 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
+||.+|||++. ...+..+|++|||+++++|||||+++....++..|++.|+.|++||++|+.+
T Consensus 5 ~~F~l~~l~~~--f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 5 CHFALFDLQPS--FRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred ChhhhcCcCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 68999999987 6799999999999999999999998866666778999999999999999854
No 53
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.9e-10 Score=112.81 Aligned_cols=54 Identities=26% Similarity=0.546 Sum_probs=48.5
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
+=|++|||+++ ||.+|||||||+|.+||||||++... +-|+.|..|+.||+.|.
T Consensus 100 DPyEILGl~pg----as~~eIKkaYR~LSik~HPDK~~~~~-----~~e~~~~~I~KAY~aLT 153 (230)
T KOG0721|consen 100 DPYEILGLDPG----ASEKEIKKAYRRLSIKYHPDKQPPEE-----GDEEFFEAIAKAYQALT 153 (230)
T ss_pred CcHHhhCCCCC----CCHHHHHHHHHHhhhhhCCCcCCCcc-----hhHHHHHHHHHHHHHhc
Confidence 35999999987 99999999999999999999998742 57889999999999885
No 54
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.92 E-value=1.1e-09 Score=124.05 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=49.5
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||++. |+.++||+|||+||++|||||++. ..|+++|++|++||++|+-
T Consensus 3 DYYeVLGVs~d----AS~eEIKKAYRKLAKKyHPDKn~~------~eAeekFqeINEAYEVLSD 56 (871)
T TIGR03835 3 DYYEVLGIDRD----ADEQEIKKAFRKLAKKYHPDRNKA------PDAASIFAEINEANDVLSN 56 (871)
T ss_pred ChhHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCC
Confidence 68999999975 999999999999999999999875 2588999999999999974
No 55
>PHA02624 large T antigen; Provisional
Probab=98.87 E-value=2.6e-09 Score=119.06 Aligned_cols=53 Identities=26% Similarity=0.426 Sum_probs=47.1
Q ss_pred HHHHHHHhCcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRP--LSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tA--T~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
...+|++|||+++ | +..+||+|||++|++|||||.. ++++||+|++||++|+-
T Consensus 10 ~~elyelLGL~~~----A~gs~~eIKkAYRkLAkkyHPDKgG---------deekfk~Ln~AYevL~d 64 (647)
T PHA02624 10 SKELMDLLGLPMA----AWGNLPLMRKAYLRKCKEYHPDKGG---------DEEKMKRLNSLYKKLQE 64 (647)
T ss_pred HHHHHHHcCCCCC----CCCCHHHHHHHHHHHHHHHCcCCCC---------cHHHHHHHHHHHHHHhc
Confidence 4489999999976 8 9999999999999999999952 35799999999999964
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-09 Score=111.70 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=50.1
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
..+-|++|||..+ |+.++|.||||+||++|||||+++. ++.+.|+.|..|||+|.-
T Consensus 32 ~enCYdVLgV~Re----a~KseIakAYRqLARrhHPDr~r~~------e~k~~F~~iAtayeilkd 87 (329)
T KOG0722|consen 32 AENCYDVLGVARE----ANKSEIAKAYRQLARRHHPDRNRDP------ESKKLFVKIATAYEILKD 87 (329)
T ss_pred chhHHHHhhhhhh----ccHHHHHHHHHHHHHHhCCcccCCc------hhhhhhhhhhcccccccc
Confidence 4678999999987 7899999999999999999999974 456899999999999963
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=3.2e-08 Score=105.50 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=53.2
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|.+|||-.. |+..||-|||||||+|||||-..+. ++++.||.||--|..|+|||+-
T Consensus 394 RDYYKILGVkRn----AsKqEI~KAYRKlAqkWHPDNFqdE--eEKKkAEKKFIDIAAAKEVLsd 452 (504)
T KOG0624|consen 394 RDYYKILGVKRN----ASKQEITKAYRKLAQKWHPDNFQDE--EEKKKAEKKFIDIAAAKEVLSD 452 (504)
T ss_pred chHHHHhhhccc----ccHHHHHHHHHHHHHhcCCccccCH--HHHHHHHHhhhhHHHHHHhhcC
Confidence 379999999966 9999999999999999999999864 3567899999999999999974
No 58
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.9e-09 Score=114.12 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=50.3
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
..++|.+|||+. ++++++|||+|||+|+-.|||||-. +.|+|.||.++.|||+|+-
T Consensus 234 ~~daYsvlGl~~----d~sd~~lKk~Yrk~A~LVhPDKn~~------~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 234 ILDAYSALGLPS----DCSDADLKKNYRKKAMLVHPDKNMI------PRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred CCCchhhcCCCC----CCCHHHHHHHHHhhceEeCCCccCC------hhHHHHHHHHHHHHHHhcc
Confidence 446999999994 4999999999999999999999984 4799999999999999863
No 59
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.57 E-value=4.7e-08 Score=106.27 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=52.9
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
+=|++|||+.+ ++..+||++||+|.+||||||.+.--...+.+-||+.+.|+.||+.|.
T Consensus 99 DPyEILGI~~~----ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lT 157 (610)
T COG5407 99 DPYEILGIDQD----TSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLT 157 (610)
T ss_pred ChHHhhcccCC----CcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhh
Confidence 57999999966 889999999999999999999998444567899999999999999885
No 60
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-07 Score=110.19 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=58.5
Q ss_pred HHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHh
Q 005087 630 IEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKF 709 (715)
Q Consensus 630 ~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL 709 (715)
+.|+.+|++.- .-+.....|++|.|+-+.++.-..+.||++|+|||+||||||||. ..++|..|+.|||.|
T Consensus 1265 ~~W~~ElekKP-~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--------GRemFe~VnKAYE~L 1335 (2235)
T KOG1789|consen 1265 ATWYNELEKKP-ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--------GREMFERVNKAYELL 1335 (2235)
T ss_pred HHHHHHHhcCC-CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--------HHHHHHHHHHHHHHH
Confidence 55667766332 112233689999999987777777999999999999999999984 668999999999999
Q ss_pred hh
Q 005087 710 LL 711 (715)
Q Consensus 710 ~~ 711 (715)
+.
T Consensus 1336 ~~ 1337 (2235)
T KOG1789|consen 1336 SS 1337 (2235)
T ss_pred HH
Confidence 84
No 61
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.50 E-value=1.9e-07 Score=88.07 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 663 PLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 663 AT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.+..+|+++||+++.+||||+.+.....++..|++.|..|++||++|+.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 45679999999999999999987755555677999999999999999854
No 62
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.46 E-value=1.6e-07 Score=96.86 Aligned_cols=34 Identities=26% Similarity=0.596 Sum_probs=32.0
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRAS 685 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~ 685 (715)
++|++|||++. |+.++||+|||+||++||||+++
T Consensus 1 d~y~~Lgv~~~----a~~~~ik~ayr~la~~~HPD~~~ 34 (354)
T TIGR02349 1 DYYEILGVSKD----ASEEEIKKAYRKLAKKYHPDRNK 34 (354)
T ss_pred ChHHhCCCCCC----CCHHHHHHHHHHHHHHHCCCCCC
Confidence 48999999975 99999999999999999999997
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.35 E-value=6.4e-07 Score=86.21 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=59.1
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
|.+++++||||+. ...+...+++.||.+..++||||.......+|..|.+.=-.||+||.+|+.+
T Consensus 1 ~~nyF~lf~lp~~--F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdP 65 (173)
T PRK01773 1 MNNPFALFDLPVD--FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDP 65 (173)
T ss_pred CCChHHhcCCCCC--CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 5679999999987 6799999999999999999999999877778888999999999999999753
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1e-05 Score=81.60 Aligned_cols=59 Identities=14% Similarity=0.358 Sum_probs=51.6
Q ss_pred cccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 643 CIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 643 c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
+++| .-|++|.|.|+ .+.++||+-||+|.|-.|||+|+++. +.|...|-.|..||-.|.
T Consensus 50 yfnL-NpfeVLqIdpe----v~~edikkryRklSilVHPDKN~Dd~----~rAqkAFdivkKA~k~l~ 108 (250)
T KOG1150|consen 50 YFNL-NPFEVLQIDPE----VTDEDIKKRYRKLSILVHPDKNPDDA----ERAQKAFDIVKKAYKLLE 108 (250)
T ss_pred cccc-ChHHHHhcCCC----CCHHHHHHHHHhhheeecCCCCcccH----HHHHHHHHHHHHHHHHHh
Confidence 3443 36999999987 89999999999999999999999863 579999999999998875
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=5.1e-05 Score=79.44 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=52.8
Q ss_pred hcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 642 TCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 642 ~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+.+--.+||.+||++.- -.-|++.+|.+|.++..++||||+...... ..+.+.||.|+.|||||.-
T Consensus 38 k~Wk~~DlYa~lgLsky-R~ka~~~qi~kah~kkv~kyHPDk~aa~g~---~~~d~fFk~iqkA~evL~D 103 (379)
T COG5269 38 KNWKKVDLYALLGLSKY-RTKAIPPQILKAHKKKVYKYHPDKTAAGGN---KGCDEFFKLIQKAREVLGD 103 (379)
T ss_pred hhhhhhhHHHHhchHhh-hcCCCcHHHHHHHHHHHHHhCccchhccCC---CCcHHHHHHHHHHHHHhcc
Confidence 33445689999999953 235889999999999999999999954321 2577899999999999963
No 66
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.60 E-value=0.00023 Score=77.50 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc--cccchHHHHHHHHHHHHHHHHhhh
Q 005087 662 RPLSQEVHAAYKRALLRFHPDRASKT--DVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 662 tAT~aEIKKAYRKLALKfHPDRn~~d--d~req~eAEEKFKeISeAYEVL~~ 711 (715)
-.|++.|||||||+.|..||||.++. .+.++=-||+.|-.+++|...+..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~ 450 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ 450 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36789999999999999999999874 344455599999999999988754
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.002 Score=66.84 Aligned_cols=54 Identities=24% Similarity=0.379 Sum_probs=46.4
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHH-Hhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMRE-KFL 710 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYE-VL~ 710 (715)
...|++|||..+ |++++|+-||-+||.++|||-.... +..++|..|-+||. ||.
T Consensus 47 ~e~fril~v~e~----~~adevr~af~~lakq~hpdsgs~~------adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 47 MECFRILGVEEG----ADADEVREAFHDLAKQVHPDSGSEE------ADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHhccccc----CchhHHHHHHHHHHHHcCCCCCCcc------ccHHHHHHHHHHHHHHHH
Confidence 367999999976 8999999999999999999988764 34579999999998 554
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00095 Score=63.67 Aligned_cols=59 Identities=24% Similarity=0.414 Sum_probs=50.5
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--ccchHHHHHHHHHHHHHHHHh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTD--VRQQVEAEEKFKLISRMREKF 709 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd--~req~eAEEKFKeISeAYEVL 709 (715)
.+.|.+|||.+. +...+|+++||++.-++|||+...-. ++=-..+++++++|++||+-+
T Consensus 113 ~~~l~~l~~~~~----~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIK----ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchh----hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 688999999977 78999999999999999999998633 333456999999999999864
No 69
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.006 Score=56.76 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHH
Q 005087 626 EKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRM 705 (715)
Q Consensus 626 E~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeA 705 (715)
.-|++.++...-+. +..-+|||.+. ++.+-||.|+||..+..||||-...=+ =-.|++|
T Consensus 43 ~~y~GGF~~kMsr~--------EA~lIL~v~~s----~~k~KikeaHrriM~~NHPD~GGSPYl---------AsKINEA 101 (112)
T KOG0723|consen 43 AFYKGGFEPKMSRR--------EAALILGVTPS----LDKDKIKEAHRRIMLANHPDRGGSPYL---------ASKINEA 101 (112)
T ss_pred hhhhcccccccchH--------HHHHHhCCCcc----ccHHHHHHHHHHHHHcCCCcCCCCHHH---------HHHHHHH
Confidence 34555555554333 45579999954 899999999999999999999875421 1369999
Q ss_pred HHHhhhccc
Q 005087 706 REKFLLTAC 714 (715)
Q Consensus 706 YEVL~~~s~ 714 (715)
|++|..++-
T Consensus 102 KdlLe~~~~ 110 (112)
T KOG0723|consen 102 KDLLEGTSL 110 (112)
T ss_pred HHHHhcccc
Confidence 999987653
No 70
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.47 E-value=0.62 Score=56.16 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=4.8
Q ss_pred CCCCCCCC
Q 005087 203 SLNNDPRP 210 (715)
Q Consensus 203 ~~~~d~~~ 210 (715)
-.|.|-.|
T Consensus 146 IVHRDLKP 153 (1021)
T PTZ00266 146 VLHRDLKP 153 (1021)
T ss_pred ceeccCcH
Confidence 46777644
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=0.61 Score=55.15 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 005087 557 ETDEYKRAMEEEWASRQRQL 576 (715)
Q Consensus 557 EtdeyK~A~EeEWasRQ~EL 576 (715)
|-.+..+-.+|||+++++|.
T Consensus 343 eree~eqkEreE~ekkerer 362 (1118)
T KOG1029|consen 343 EREEVEQKEREEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444556666554443
No 72
>PTZ00121 MAEBL; Provisional
Probab=92.82 E-value=0.94 Score=56.48 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=7.6
Q ss_pred CCCceEEEecC
Q 005087 32 NLDNVVLIDVD 42 (715)
Q Consensus 32 ~l~nvv~IDvD 42 (715)
++.|-||||.-
T Consensus 613 i~~nhi~i~wk 623 (2084)
T PTZ00121 613 IPKNHIFIEWK 623 (2084)
T ss_pred CcccceEEEec
Confidence 46677777764
No 73
>PTZ00121 MAEBL; Provisional
Probab=91.76 E-value=1.2 Score=55.73 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=5.9
Q ss_pred eEEEeCccchhhccC
Q 005087 49 VILIDVPESLQHKIG 63 (715)
Q Consensus 49 VIiiD~pes~~~k~~ 63 (715)
.|||-.-|-.+..-|
T Consensus 269 CvilGtHe~~R~~nC 283 (2084)
T PTZ00121 269 CVIIGTHEAKRIHNC 283 (2084)
T ss_pred eEEEecchhhhhhhh
Confidence 344444443333333
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=1.8 Score=51.38 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 005087 572 RQRQLQIQAEEAQ 584 (715)
Q Consensus 572 RQ~ELq~QAEEAq 584 (715)
|||+|++|+||.+
T Consensus 379 rQReiE~qrEEer 391 (1118)
T KOG1029|consen 379 RQREIERQREEER 391 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554433
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=0.56 Score=45.08 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 667 EVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 667 EIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++..|+.++.+|||||....+...+..+-+.|..++.||.+|..
T Consensus 19 ~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 19 ALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred HhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHH
Confidence 467889999999999999987766677788999999999999864
No 76
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=88.01 E-value=3.4 Score=42.27 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005087 560 EYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKL 639 (715)
Q Consensus 560 eyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~ 639 (715)
.|+.-.+.||....++|+.|-++ +.+..|.|.+.+ .+| .....+.-..+..+||...|.+|+.+
T Consensus 127 ~~~~~~~~el~~ek~kL~~q~~e--------~~e~lr~L~~~k-------~~r-~Kn~~~~Lq~lI~Kwr~~~q~~l~eL 190 (221)
T PF10376_consen 127 GYEELKQQELEEEKRKLEKQVDE--------KEEELRRLKLVK-------QYR-SKNDLEQLQSLIKKWRSASQEALYEL 190 (221)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHH-------HHH-hhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667788888888887655 222233332222 111 11122334556778999999988877
Q ss_pred hh-------hcccHHHHHHHhCcCCC
Q 005087 640 ET-------TCIDMASLLRALGIHVG 658 (715)
Q Consensus 640 e~-------~c~DMaslY~vLGV~~e 658 (715)
.. .-+.|..||..|||+..
T Consensus 191 ~~~~~~~e~~~~TM~eL~~~l~ID~~ 216 (221)
T PF10376_consen 191 QSEMSEEEGEKFTMGELIKRLGIDYD 216 (221)
T ss_pred HHHHhhccccCccHHHHHHHhCCCcc
Confidence 44 34559999999999964
No 77
>PF13446 RPT: A repeated domain in UCH-protein
Probab=78.95 E-value=8.1 Score=31.39 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=36.7
Q ss_pred ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHH
Q 005087 644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMR 706 (715)
Q Consensus 644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAY 706 (715)
+|....|..|||++. .+++.|-.+|+.... -.|+ ....+-+.++.|..+.
T Consensus 2 ~~~~~Ay~~Lgi~~~----~~Dd~Ii~~f~~~~~-~~P~--------~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 2 MDVEEAYEILGIDED----TDDDFIISAFQSKVN-DDPS--------QKDTLREALRVIAESR 51 (62)
T ss_pred CCHHHHHHHhCcCCC----CCHHHHHHHHHHHHH-cChH--------hHHHHHHHHHHHHHHc
Confidence 467789999999754 889999999998876 3332 2345667777777653
No 78
>PLN03086 PRLI-interacting factor K; Provisional
Probab=77.74 E-value=12 Score=43.08 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q 005087 605 KQRLEEIRETQKKDEENMNLKEKIR 629 (715)
Q Consensus 605 KQRlEe~RE~qkKrEeea~~kE~~R 629 (715)
++-++.+...++-+..+++++++.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (567)
T PLN03086 41 REAIEAAQRSRRLDAIEAQIKADQQ 65 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444443333
No 79
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.35 E-value=33 Score=37.52 Aligned_cols=7 Identities=57% Similarity=0.610 Sum_probs=4.0
Q ss_pred ccccccc
Q 005087 495 ETQCADR 501 (715)
Q Consensus 495 ~~~~~~~ 501 (715)
+-||++|
T Consensus 272 evqiakr 278 (445)
T KOG2891|consen 272 EVQIAKR 278 (445)
T ss_pred HHHHHHH
Confidence 3456666
No 80
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.33 E-value=27 Score=36.18 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=10.8
Q ss_pred cHHHHHHHhCcCCC
Q 005087 645 DMASLLRALGIHVG 658 (715)
Q Consensus 645 DMaslY~vLGV~~e 658 (715)
+..+.|.+|+|...
T Consensus 144 niDdAl~vLsv~d~ 157 (221)
T KOG3223|consen 144 NIDDALAVLSVNDS 157 (221)
T ss_pred cHHHHHHHHhcccc
Confidence 34488999999865
No 81
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=75.56 E-value=25 Score=42.52 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=8.0
Q ss_pred CCCcccCC-CCccceeec
Q 005087 109 ANKFEDLG-DDECRVVKE 125 (715)
Q Consensus 109 ~~~s~~~d-~ddc~~v~e 125 (715)
..|++.+- +|-|+||-+
T Consensus 206 FGKFveiHf~dk~~VvGG 223 (1259)
T KOG0163|consen 206 FGKFVEIHFDDKGQVVGG 223 (1259)
T ss_pred ccceEEEEEcCCCceech
Confidence 34555443 344555543
No 82
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=75.43 E-value=25 Score=41.33 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=5.3
Q ss_pred CCCCCCCCcc
Q 005087 322 QSPPRPFFWY 331 (715)
Q Consensus 322 ~~p~~p~~~~ 331 (715)
++||+|--+.
T Consensus 364 evpPapkeSS 373 (940)
T KOG4661|consen 364 EVPPAPKESS 373 (940)
T ss_pred cCCCCCcccc
Confidence 5566665443
No 83
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=74.51 E-value=11 Score=43.92 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhC
Q 005087 575 QLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALG 654 (715)
Q Consensus 575 ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLG 654 (715)
||.++||..|..| .++++|+. |++++++.++++|.+-++. .+ --+|-+.+ -.+|++..|..|.
T Consensus 275 e~~l~Ae~kqekR---lq~~a~lk--------rv~k~~~re~~redeqql~-~~-~kaq~e~e----~~~D~~q~~~ll~ 337 (645)
T KOG0681|consen 275 ELALTAEKKQEKR---LQEQAALK--------RVEKINARENRREDEQQLE-SY-NKAQGEQE----SNLDLEQKFPLLN 337 (645)
T ss_pred hhhccHHHHHHHH---HHHHHHHh--------hHHHHHHHHhhhhhHHHHH-HH-HHhhhchh----cCccHhhhchhhc
Confidence 4778877666522 23333433 3444555444444333332 22 12222222 1678889999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 005087 655 IHVGGSFRPLSQEVHAAYKRALLRFHPDRAS 685 (715)
Q Consensus 655 V~~eGg~tAT~aEIKKAYRKLALKfHPDRn~ 685 (715)
|+.. -++++||.-.+++.|+.--|.-.
T Consensus 338 v~~e----L~~d~lk~k~~qr~lkas~dar~ 364 (645)
T KOG0681|consen 338 VPAE----LDEDQLKEKKKQRILKASTDARL 364 (645)
T ss_pred chhh----hCHHHHHHHHHHHHHHhhhhhhc
Confidence 9844 78899999999999988777543
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.19 E-value=1e+02 Score=31.48 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 558 TDEYKRAMEEEWASRQRQLQIQAEE 582 (715)
Q Consensus 558 tdeyK~A~EeEWasRQ~ELq~QAEE 582 (715)
...++.-.+.-|..+..+|+.+...
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhcccccccccccccc
Confidence 4566777777777777777766653
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.00 E-value=38 Score=40.00 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=28.8
Q ss_pred CccchhhhhhHHhhhhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005087 539 SLTSAFADDIINEREKLK---ETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMR 596 (715)
Q Consensus 539 ~~~~~~~~~~i~~rEklk---EtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R 596 (715)
+.++.--..|+..|++-| ++-|.|-++|.+ -+..|+.|..|.++.|+.+.+.++|
T Consensus 470 e~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~---~R~~lEkQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 470 EQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR---QRASLEKQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 344444456777777777 444555554322 3345566655555555544333333
No 86
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=73.48 E-value=18 Score=42.44 Aligned_cols=13 Identities=54% Similarity=0.690 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 005087 603 RQKQRLEEIRETQ 615 (715)
Q Consensus 603 RqKQRlEe~RE~q 615 (715)
||+||||--|-++
T Consensus 660 ~qRQrLERErmEr 672 (940)
T KOG4661|consen 660 RQRQRLERERMER 672 (940)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555444333
No 87
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=72.75 E-value=1e+02 Score=30.29 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhhhhhhcccHH-HHHHHhCcCCCCCCCCCHHHHHHHHHH
Q 005087 625 KEKIRIEVRKELCKLETTCIDMA-SLLRALGIHVGGSFRPLSQEVHAAYKR 674 (715)
Q Consensus 625 kE~~R~eiR~eLe~~e~~c~DMa-slY~vLGV~~eGg~tAT~aEIKKAYRK 674 (715)
.+..|..+..+|..... +++ .++..||-. .+.+.|.+|--.
T Consensus 136 I~~~k~~a~~~l~~~a~---~lA~~i~~kL~~~------~~~~~~~~~v~~ 177 (181)
T PRK13454 136 IAEIRAGALESVEEVAK---DTAEALVAALGGK------ADAAAVDAAVAQ 177 (181)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHcCC------CCHHHHHHHHHH
Confidence 34555555555553322 232 467778654 456677766543
No 88
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=70.36 E-value=36 Score=32.53 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=17.3
Q ss_pred HHHHHHHhCcCCCCCCCCC-HHHHHHHHHHH
Q 005087 646 MASLLRALGIHVGGSFRPL-SQEVHAAYKRA 675 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT-~aEIKKAYRKL 675 (715)
+.+.+.+|+|...+ .+.. ..-+|+||..-
T Consensus 54 Id~Al~aLs~~~~~-~drHPErR~KAAy~af 83 (122)
T PF06244_consen 54 IDDALDALSLTDKP-IDRHPERRMKAAYKAF 83 (122)
T ss_pred HHHHHHHcccCCCC-CCCCcchhHHHHHHHH
Confidence 44889999998631 1222 23467777654
No 89
>PLN03086 PRLI-interacting factor K; Provisional
Probab=69.39 E-value=25 Score=40.73 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 597 LLDMERRQKQRLEEIRETQKKDEE 620 (715)
Q Consensus 597 ~lemERRqKQRlEe~RE~qkKrEe 620 (715)
--++|.-|++|--+-++.|.+..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (567)
T PLN03086 41 REAIEAAQRSRRLDAIEAQIKADQ 64 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776666666666333
No 90
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.05 E-value=22 Score=38.81 Aligned_cols=37 Identities=38% Similarity=0.567 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005087 599 DMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELC 637 (715)
Q Consensus 599 emERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe 637 (715)
.|||..+|-|+..+++++++++++. |+.|++-+..++
T Consensus 327 qlerqekqeleqmaeeekkr~eeae--erqraeekeq~e 363 (445)
T KOG2891|consen 327 QLERQEKQELEQMAEEEKKREEEAE--ERQRAEEKEQKE 363 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHH
Confidence 3466678889999999999998876 566666655544
No 91
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=66.40 E-value=18 Score=38.19 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=19.5
Q ss_pred CccchhhhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 539 SLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKK 589 (715)
Q Consensus 539 ~~~~~~~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKr 589 (715)
.+......-+...|++..+ ++. .+..+.||+++|..++|++|++++
T Consensus 251 ~l~~e~~~K~~k~R~~~~~--~~~---K~~~~~r~E~~~~~k~e~kr~e~~ 296 (321)
T PF07946_consen 251 KLSPEAKKKAKKNREEEEE--KIL---KEAHQERQEEAQEKKEEKKREERE 296 (321)
T ss_pred eeCHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555554332 122 222333555554444444444433
No 92
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=64.11 E-value=19 Score=34.45 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=34.8
Q ss_pred ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
+-+.....+|||+.. .+.++|.+-|.+|--..+|++...- + .=..|-+|+|.|.
T Consensus 55 Mtl~EA~~ILnv~~~----~~~eeI~k~y~~Lf~~Nd~~kGGSf--Y-------LQSKV~rAKErl~ 108 (127)
T PF03656_consen 55 MTLDEARQILNVKEE----LSREEIQKRYKHLFKANDPSKGGSF--Y-------LQSKVFRAKERLE 108 (127)
T ss_dssp --HHHHHHHHT--G------SHHHHHHHHHHHHHHT-CCCTS-H--H-------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCc----cCHHHHHHHHHHHHhccCCCcCCCH--H-------HHHHHHHHHHHHH
Confidence 445678899999974 8899999999999999999976431 1 1124566666653
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=63.16 E-value=1.1e+02 Score=35.01 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=68.4
Q ss_pred cCCCccchhhhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHH
Q 005087 536 QGVSLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKR----------AESMRLLDMERRQK 605 (715)
Q Consensus 536 ~~~~~~~~~~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkK----------Ae~~R~lemERRqK 605 (715)
.|.--+.++..+|-..|+.|+.-.+-|++.|.|-..=..||+.-++|.+..+.+.. .+-+|+-+--.+..
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lq 150 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQ 150 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677888899999999999999999877766677665554433332222 12234445556677
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005087 606 QRLEEIRETQKKDEENMNLKEKIRIEVRKE 635 (715)
Q Consensus 606 QRlEe~RE~qkKrEeea~~kE~~R~eiR~e 635 (715)
.||.++=+...+-++.++..-.-+.+.|..
T Consensus 151 trl~~l~~qr~ql~aq~qsl~a~~k~LQ~s 180 (499)
T COG4372 151 TRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888766666666643
No 94
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=62.64 E-value=82 Score=35.33 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHh
Q 005087 601 ERRQKQRLEEIRETQKKD-EENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRF 679 (715)
Q Consensus 601 ERRqKQRlEe~RE~qkKr-Eeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKf 679 (715)
.+..+|.+.++++....- +..-...+.+|.+++.+-++.....+=|..+-...+|. +|+++|++.|-.+|..|
T Consensus 311 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~A~krVk~~Lil~~ia~~~~i~------v~~eei~~~i~~~a~~y 384 (441)
T COG0544 311 DNLLKQALQQLQQQGIDSLEASGESEEELREEFKEEAEKRVKLGLLLEEIAKEEKLE------VTEEEIKAEIEELARQY 384 (441)
T ss_pred HHHHHHHHHHHHhcccchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------CCHHHHHHHHHHHHHHh
Confidence 344455555555544441 11111455666666666555555555566777777777 67999999999999999
Q ss_pred CC
Q 005087 680 HP 681 (715)
Q Consensus 680 HP 681 (715)
=.
T Consensus 385 ~~ 386 (441)
T COG0544 385 GG 386 (441)
T ss_pred CC
Confidence 54
No 95
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=61.23 E-value=23 Score=39.67 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=6.1
Q ss_pred HhhhhccccHHHH
Q 005087 550 NEREKLKETDEYK 562 (715)
Q Consensus 550 ~~rEklkEtdeyK 562 (715)
..|||.+|-...|
T Consensus 293 ~~~~~~~~~~~~~ 305 (429)
T PRK00247 293 QYREKQKEKKAFL 305 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 3455655533333
No 96
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=61.22 E-value=17 Score=33.87 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 663 PLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 663 AT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.+..++++|.|..-++.|||.-... +++|..-|+-+|.++.-.+.|..
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~-P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQH-PEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccC-hHHHHhhHHHHHHHHHHHHHHhc
Confidence 4566899999999999999988764 34677788889999998887765
No 97
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.64 E-value=36 Score=37.69 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005087 595 MRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKEL 636 (715)
Q Consensus 595 ~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eL 636 (715)
.|+..|..-.|.|-|++++..++-++..+.+|+-+..++++.
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444455555555555555444444444444443
No 98
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=60.43 E-value=1e+02 Score=30.74 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 562 KRAMEEEWASRQRQLQIQAEEAQRLRKK 589 (715)
Q Consensus 562 K~A~EeEWasRQ~ELq~QAEEAqRlRKr 589 (715)
+...|+||....+-.+..-++...+|..
T Consensus 67 ~~~ee~E~~~l~a~N~~~N~~~~~~Re~ 94 (170)
T PF14943_consen 67 KEEEEEEHRRLMAWNEEWNAEIAELREE 94 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677776666555544444444443
No 99
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=59.84 E-value=8.6 Score=32.41 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=20.6
Q ss_pred CceEEEecCCCCccceEEEeCccchhh
Q 005087 34 DNVVLIDVDSERLDNVILIDVPESLQH 60 (715)
Q Consensus 34 ~nvv~IDvDsd~~~nVIiiD~pes~~~ 60 (715)
..|++||.|.- .++||||.|...-.
T Consensus 29 ~~vl~~d~d~~--~d~viiD~p~~~~~ 53 (104)
T cd02042 29 KRVLLIDLDPQ--YDYIIIDTPPSLGL 53 (104)
T ss_pred CcEEEEeCCCC--CCEEEEeCcCCCCH
Confidence 37999999966 68999999987643
No 100
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.82 E-value=84 Score=36.17 Aligned_cols=45 Identities=31% Similarity=0.494 Sum_probs=30.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 005087 597 LLDMERRQK--QRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETT 642 (715)
Q Consensus 597 ~lemERRqK--QRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~ 642 (715)
.++|||+.+ .||.+.|+...-.-.- ...|++|++.+++=.+++..
T Consensus 282 k~~lerkl~ea~rl~elreg~e~e~~r-kelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 282 KLDLERKLDEAPRLSELREGVENETSR-KELEQLRVALEKAEKELEAN 328 (575)
T ss_pred hhhHHHHHhhhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 356777776 7888888876543332 45688888888776666655
No 101
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=59.47 E-value=81 Score=37.83 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=15.2
Q ss_pred hhhhhhHHhhhhccccHHHHHHHH
Q 005087 543 AFADDIINEREKLKETDEYKRAME 566 (715)
Q Consensus 543 ~~~~~~i~~rEklkEtdeyK~A~E 566 (715)
--....+-+|+|+.+--|.+-+.|
T Consensus 250 KQ~rk~meEreK~R~erEr~~lee 273 (811)
T KOG4364|consen 250 KQLRKNMEEREKERKERERQVLEE 273 (811)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334457788888877666644443
No 102
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.41 E-value=1.1e+02 Score=36.40 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=3.4
Q ss_pred cccccccc
Q 005087 522 SNYQLDAG 529 (715)
Q Consensus 522 ~~~~~~~~ 529 (715)
|.|.+-.|
T Consensus 471 p~Ykl~~G 478 (771)
T TIGR01069 471 PTYKLLKG 478 (771)
T ss_pred eEEEECCC
Confidence 44444333
No 103
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=59.30 E-value=36 Score=38.53 Aligned_cols=57 Identities=33% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHH--HHHH--HHHHHHHHHHHHHHHHHH
Q 005087 564 AMEEEWASRQRQLQIQAEEAQRLRKKKR--AESMRLL--DMER--RQKQRLEEIRETQKKDEE 620 (715)
Q Consensus 564 A~EeEWasRQ~ELq~QAEEAqRlRKrkK--Ae~~R~l--emER--RqKQRlEe~RE~qkKrEe 620 (715)
+.+++=...|..+++|-+.++|+.++.. .|-.+.| |..| -.++.+++.|++.+++++
T Consensus 293 ~~~~~~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~ 355 (460)
T KOG1363|consen 293 AFEEEERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEE 355 (460)
T ss_pred hhhhhhHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhH
Confidence 4444444555555555554444444333 1111111 1111 335566666666666655
No 104
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=59.29 E-value=10 Score=40.43 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=27.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 555 LKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKK 590 (715)
Q Consensus 555 lkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrk 590 (715)
|..|--+-...|+||..|++.-+++++||+|.|-++
T Consensus 59 L~RTsSLP~etEee~~Krke~q~~~r~eakrkr~e~ 94 (284)
T PF07897_consen 59 LMRTSSLPTETEEEWRKRKEMQSLRRLEAKRKRSEK 94 (284)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667789999999988888888887766655
No 105
>PLN02316 synthase/transferase
Probab=59.02 E-value=26 Score=43.13 Aligned_cols=24 Identities=33% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 569 WASRQRQLQIQAEEAQRLRKKKRA 592 (715)
Q Consensus 569 WasRQ~ELq~QAEEAqRlRKrkKA 592 (715)
-+.+|++.+||+||++|...+|.|
T Consensus 261 la~e~ae~~~~~ee~~r~~~~kaa 284 (1036)
T PLN02316 261 LAKEEAERERQAEEQRRREEEKAA 284 (1036)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334667777888877776665554
No 106
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=58.99 E-value=2.1e+02 Score=28.98 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=12.8
Q ss_pred HHHhCcCCCCCCCCCHHHHHHHHHH
Q 005087 650 LRALGIHVGGSFRPLSQEVHAAYKR 674 (715)
Q Consensus 650 Y~vLGV~~eGg~tAT~aEIKKAYRK 674 (715)
=.+||.. .+.++|.+|...
T Consensus 182 ~Kllg~~------~dk~~~~~av~~ 200 (204)
T PRK09174 182 EQLIGGT------ADKASVAAAVKA 200 (204)
T ss_pred HHHhCcc------cCHHHHHHHHHH
Confidence 3566766 457788888764
No 107
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=58.89 E-value=1.8e+02 Score=28.22 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=6.5
Q ss_pred hhhhhHHhhhh
Q 005087 544 FADDIINEREK 554 (715)
Q Consensus 544 ~~~~~i~~rEk 554 (715)
+-.++|.+|+.
T Consensus 46 Pi~~~l~~R~~ 56 (167)
T PRK08475 46 PLKNFYKSRIN 56 (167)
T ss_pred HHHHHHHHHHH
Confidence 34566677654
No 108
>PTZ00491 major vault protein; Provisional
Probab=58.83 E-value=54 Score=39.82 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhc
Q 005087 572 RQRQLQIQAEEAQRLRKKKRAESMR--LLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTC 643 (715)
Q Consensus 572 RQ~ELq~QAEEAqRlRKrkKAe~~R--~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c 643 (715)
|++|.++=+-|.|++.-+.+||.+| ||+|+.... -+..+=+...+....-|..|.+.+++++....+|
T Consensus 674 ~~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~----aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra 743 (850)
T PTZ00491 674 LLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESA----AVESSGQSRAEALAEAEARLIEAEAEVEQAELRA 743 (850)
T ss_pred HHHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHH----HHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence 5555555566888988888899888 787776443 2322222222222334567788888877665544
No 109
>PRK00106 hypothetical protein; Provisional
Probab=58.58 E-value=2e+02 Score=33.32 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=6.0
Q ss_pred HHHHHhCcCC
Q 005087 648 SLLRALGIHV 657 (715)
Q Consensus 648 slY~vLGV~~ 657 (715)
.|..+-|+..
T Consensus 158 ~Le~~a~lt~ 167 (535)
T PRK00106 158 ELERVAALSQ 167 (535)
T ss_pred HHHHHhCCCH
Confidence 4566666663
No 110
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=57.49 E-value=1.9e+02 Score=28.06 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.2
Q ss_pred HHHHHHHHH
Q 005087 670 AAYKRALLR 678 (715)
Q Consensus 670 KAYRKLALK 678 (715)
.+|..+.++
T Consensus 157 ~~y~~~~~~ 165 (167)
T PRK08475 157 QEYVNILLK 165 (167)
T ss_pred HHHHHHHhc
Confidence 356666554
No 111
>PRK10780 periplasmic chaperone; Provisional
Probab=57.46 E-value=60 Score=31.08 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=34.1
Q ss_pred hhhhHHhhhhccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 545 ADDIINEREKLKETDEYKRAM---EEEWASRQRQLQIQAEEAQRLRKK 589 (715)
Q Consensus 545 ~~~~i~~rEklkEtdeyK~A~---EeEWasRQ~ELq~QAEEAqRlRKr 589 (715)
-.++|+-..-+.+++++|.|+ +.+-..|+.+|+..+.|-+.+...
T Consensus 25 KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~ 72 (165)
T PRK10780 25 KIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQK 72 (165)
T ss_pred CeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888888775 568899999999888877655443
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.35 E-value=1e+02 Score=36.60 Aligned_cols=10 Identities=40% Similarity=0.434 Sum_probs=5.7
Q ss_pred HHHHHhCcCC
Q 005087 648 SLLRALGIHV 657 (715)
Q Consensus 648 slY~vLGV~~ 657 (715)
+|+.+||-..
T Consensus 619 dLfsaLg~ak 628 (697)
T PF09726_consen 619 DLFSALGDAK 628 (697)
T ss_pred HHHHHHHHHH
Confidence 4566666553
No 113
>PRK12704 phosphodiesterase; Provisional
Probab=56.21 E-value=1.8e+02 Score=33.34 Aligned_cols=10 Identities=30% Similarity=0.414 Sum_probs=5.8
Q ss_pred HHHHHhCcCC
Q 005087 648 SLLRALGIHV 657 (715)
Q Consensus 648 slY~vLGV~~ 657 (715)
.|..+-|+..
T Consensus 143 ~l~~~a~lt~ 152 (520)
T PRK12704 143 ELERISGLTA 152 (520)
T ss_pred HHHHHhCCCH
Confidence 4556666663
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=56.18 E-value=52 Score=40.51 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=5.3
Q ss_pred hhhHHhhhhc
Q 005087 546 DDIINEREKL 555 (715)
Q Consensus 546 ~~~i~~rEkl 555 (715)
..+|..|.+.
T Consensus 805 ~~~~~~~a~~ 814 (1018)
T KOG2002|consen 805 KTVIAQEAQL 814 (1018)
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 115
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=55.71 E-value=1.1e+02 Score=37.65 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=8.3
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 005087 689 VRQQVEAEEKFKLISRMRE 707 (715)
Q Consensus 689 ~req~eAEEKFKeISeAYE 707 (715)
++--++++|-|-.--+.|-
T Consensus 1085 ieLL~ACreEFhRRLkvY~ 1103 (1259)
T KOG0163|consen 1085 IELLEACREEFHRRLKVYH 1103 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555544444443
No 116
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=55.29 E-value=47 Score=40.42 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005087 571 SRQRQLQIQAEEAQRLRK 588 (715)
Q Consensus 571 sRQ~ELq~QAEEAqRlRK 588 (715)
+|++++++|++||++.||
T Consensus 249 r~~ee~E~~~eEak~kkK 266 (1064)
T KOG1144|consen 249 RRREEEEAQEEEAKEKKK 266 (1064)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 117
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=54.30 E-value=39 Score=30.32 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=17.3
Q ss_pred HhCcCCCCCCCCCHHHHHHHHHH
Q 005087 652 ALGIHVGGSFRPLSQEVHAAYKR 674 (715)
Q Consensus 652 vLGV~~eGg~tAT~aEIKKAYRK 674 (715)
+-|+||+||..+-..=|-++|++
T Consensus 59 ip~LPPGGGl~sKr~~Ie~vy~~ 81 (81)
T PF07830_consen 59 IPGLPPGGGLASKRSVIEAVYNE 81 (81)
T ss_dssp -SS--TTTTCGGGHHHHHHHHHH
T ss_pred CCCCcCCcCHHHHHHHHHHHhcC
Confidence 66899999988888889999975
No 118
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=53.16 E-value=1.6e+02 Score=28.64 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=6.1
Q ss_pred hhhhhHHhhhh
Q 005087 544 FADDIINEREK 554 (715)
Q Consensus 544 ~~~~~i~~rEk 554 (715)
+-..+|.+|..
T Consensus 48 PI~~~l~~R~~ 58 (184)
T CHL00019 48 VLSDLLDNRKQ 58 (184)
T ss_pred HHHHHHHHHHH
Confidence 34466666643
No 119
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=53.13 E-value=65 Score=37.61 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005087 565 MEEEWASRQRQLQIQAE 581 (715)
Q Consensus 565 ~EeEWasRQ~ELq~QAE 581 (715)
--||=..|++||++.++
T Consensus 198 s~eE~~~r~~el~~~R~ 214 (735)
T PF04615_consen 198 SLEEAKERRAELAKMRA 214 (735)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34566668888888776
No 120
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.94 E-value=2.6e+02 Score=28.21 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=6.3
Q ss_pred hhhhhHHhhhh
Q 005087 544 FADDIINEREK 554 (715)
Q Consensus 544 ~~~~~i~~rEk 554 (715)
+-.++|.+|..
T Consensus 72 Pi~~~L~~R~~ 82 (205)
T PRK06231 72 PTQRFLNKRKE 82 (205)
T ss_pred HHHHHHHHHHH
Confidence 34566666654
No 121
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.22 E-value=3e+02 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 005087 564 AMEEEWASRQRQLQIQ 579 (715)
Q Consensus 564 A~EeEWasRQ~ELq~Q 579 (715)
..++||..++.+++.+
T Consensus 55 EaeeE~~~~R~Ele~e 70 (514)
T TIGR03319 55 EAKEEVHKLRAELERE 70 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 122
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.55 E-value=1.8e+02 Score=27.96 Aligned_cols=48 Identities=33% Similarity=0.495 Sum_probs=21.4
Q ss_pred hhhhHHhhhh-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 545 ADDIINEREK-----LKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRA 592 (715)
Q Consensus 545 ~~~~i~~rEk-----lkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKA 592 (715)
-..+|.+|.+ +.+..+.+...++.-+.-+.+|+.-+.||+..+...++
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~ 96 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKA 96 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666643 33333444443333333444444444444444444443
No 123
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=51.03 E-value=1.5e+02 Score=29.87 Aligned_cols=8 Identities=13% Similarity=0.451 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 005087 668 VHAAYKRA 675 (715)
Q Consensus 668 IKKAYRKL 675 (715)
+...|.++
T Consensus 197 ~~~~~~~~ 204 (216)
T PF11600_consen 197 EKSDYEKK 204 (216)
T ss_pred ccchhhcc
Confidence 45556554
No 124
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.20 E-value=1e+02 Score=35.61 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=23.2
Q ss_pred hhHHhhhhccccHHHHHH------HHHHHHHHHHHHH
Q 005087 547 DIINEREKLKETDEYKRA------MEEEWASRQRQLQ 577 (715)
Q Consensus 547 ~~i~~rEklkEtdeyK~A------~EeEWasRQ~ELq 577 (715)
+-|.+|+.|+-..+++++ .+++|..|..+|.
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456678888777666654 4579999999995
No 125
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.54 E-value=4.4e+02 Score=30.25 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 005087 596 RLLDMERRQKQRLEEI 611 (715)
Q Consensus 596 R~lemERRqKQRlEe~ 611 (715)
|+...|.|..+|.+.+
T Consensus 77 rL~qrE~rL~qRee~L 92 (514)
T TIGR03319 77 ELQRLERRLLQREETL 92 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 126
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=48.06 E-value=2.7e+02 Score=26.99 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 005087 567 EEWASRQRQLQIQ 579 (715)
Q Consensus 567 eEWasRQ~ELq~Q 579 (715)
.++..-.+++..+
T Consensus 28 ~~a~~i~~~a~~~ 40 (198)
T PRK03963 28 KEAEKIKEEARKR 40 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 127
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.78 E-value=3.1e+02 Score=27.95 Aligned_cols=10 Identities=40% Similarity=0.511 Sum_probs=5.4
Q ss_pred hhhhHHhhhh
Q 005087 545 ADDIINEREK 554 (715)
Q Consensus 545 ~~~~i~~rEk 554 (715)
-..+|.+|.+
T Consensus 30 i~~~l~~R~~ 39 (246)
T TIGR03321 30 ILDAMDAREK 39 (246)
T ss_pred HHHHHHHHHH
Confidence 3455666654
No 128
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=47.24 E-value=2.7e+02 Score=26.82 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005087 572 RQRQLQIQAEEAQRLRK 588 (715)
Q Consensus 572 RQ~ELq~QAEEAqRlRK 588 (715)
|+..|+..-++|...++
T Consensus 51 R~~~I~~~l~~A~~~~~ 67 (174)
T PRK07352 51 RREAILQALKEAEERLR 67 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444443
No 129
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=46.97 E-value=17 Score=27.43 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhC
Q 005087 665 SQEVHAAYKRALLRFH 680 (715)
Q Consensus 665 ~aEIKKAYRKLALKfH 680 (715)
.++.+.+.|++||.||
T Consensus 10 ~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYH 25 (28)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4678999999999999
No 130
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.92 E-value=2.3e+02 Score=35.88 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005087 601 ERRQKQRLEEIRETQKKDEENMNLKEKIR 629 (715)
Q Consensus 601 ERRqKQRlEe~RE~qkKrEeea~~kE~~R 629 (715)
..-..+++++.|+....-..+....++-+
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~ 951 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEAL 951 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666665555544444433333
No 131
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=46.60 E-value=21 Score=31.36 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCccceEEEeCccchh
Q 005087 33 LDNVVLIDVDSERLDNVILIDVPESLQ 59 (715)
Q Consensus 33 l~nvv~IDvDsd~~~nVIiiD~pes~~ 59 (715)
-..|++||.|-..=.++||||.|-.+-
T Consensus 29 ~~~~~l~d~d~~~~~D~IIiDtpp~~~ 55 (106)
T cd03111 29 GRRVLLVDLDLQFGDDYVVVDLGRSLD 55 (106)
T ss_pred CCcEEEEECCCCCCCCEEEEeCCCCcC
Confidence 568999999988878999999998763
No 132
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=45.97 E-value=1.5e+02 Score=28.64 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhccc-HHHHHHHhCcCCCCCCCCCHHHHHHHHHH
Q 005087 599 DMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCID-MASLLRALGIHVGGSFRPLSQEVHAAYKR 674 (715)
Q Consensus 599 emERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~D-MaslY~vLGV~~eGg~tAT~aEIKKAYRK 674 (715)
.+|++.+..+++..+... +.-..+-+.++..+...|.+++..-.+ +...|..|||| |..||..--.+
T Consensus 50 ~~e~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvP-------s~~dv~~L~~r 117 (132)
T PF05597_consen 50 KLEKKTRKKAEEQVEEAR--DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVP-------SRKDVEALSAR 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHH
Confidence 345555555555554444 222344567777777777766553222 67899999999 35566544333
No 133
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=45.85 E-value=49 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCC
Q 005087 623 NLKEKIRIEVRKELCKLETTCIDMASLLRALGIHV 657 (715)
Q Consensus 623 ~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~ 657 (715)
..+..|-..|=.++..+... |..-|..||||-
T Consensus 90 ~EL~~fD~kV~~a~~~m~~~---~~~~L~~LgVPf 121 (150)
T PF10454_consen 90 AELDKFDEKVYKASKQMSKE---QQAELKELGVPF 121 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCe
Confidence 33446666677777756555 788999999995
No 134
>PRK12704 phosphodiesterase; Provisional
Probab=45.70 E-value=2.5e+02 Score=32.21 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 005087 566 EEEWASRQRQLQIQ 579 (715)
Q Consensus 566 EeEWasRQ~ELq~Q 579 (715)
++|+..++.++++.
T Consensus 63 eeE~~~~R~Ele~e 76 (520)
T PRK12704 63 KEEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 34454454444433
No 135
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=45.29 E-value=1.3e+02 Score=33.77 Aligned_cols=27 Identities=44% Similarity=0.502 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005087 572 RQRQLQIQAEEAQRLRKKKRAESMRLLDME 601 (715)
Q Consensus 572 RQ~ELq~QAEEAqRlRKrkKAe~~R~lemE 601 (715)
|+.++++|++|.++.+ .+|.+||-.||
T Consensus 81 r~~~~~~~aeel~~~~---~~eq~rlk~le 107 (387)
T PRK09510 81 RKKKEQQQAEELQQKQ---AAEQERLKQLE 107 (387)
T ss_pred HHhHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 6777777777653333 33334544444
No 136
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.18 E-value=52 Score=35.13 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCC
Q 005087 597 LLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVG 658 (715)
Q Consensus 597 ~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~e 658 (715)
++.+|.-++.|++|.|...-..|++--+ ..-.+|. -+++-.-+||..-.|...
T Consensus 256 ava~eqemrarveemrakvveaeaevp~------als~alr---~gnigvmdy~n~~nv~ad 308 (328)
T COG4864 256 AVALEQEMRARVEEMRAKVVEAEAEVPL------ALSEALR---EGNIGVMDYYNMKNVQAD 308 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccH------HHHHHHH---hCCchhhhhhhhhccccc
Confidence 3566777889999999888777766331 1112222 466667788988888743
No 137
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=44.77 E-value=3e+02 Score=29.80 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=19.2
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCC
Q 005087 619 EENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHV 657 (715)
Q Consensus 619 Eeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~ 657 (715)
+..+..|=..|+-++.-|..+...+++ .|..+|.=.
T Consensus 204 ~~~~~~Ki~Ar~~a~~yl~~l~~~v~~---~L~~~G~f~ 239 (291)
T PF06098_consen 204 EKELREKIAARAFAQQYLSDLVPSVLD---SLEDSGYFY 239 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCC
Confidence 333444555667777766655555432 445555553
No 138
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.25 E-value=1.5e+02 Score=32.42 Aligned_cols=43 Identities=33% Similarity=0.417 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005087 582 EAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNL 624 (715)
Q Consensus 582 EAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~ 624 (715)
-|.|=|+++|||.+-++.=..-...|=+++|+.....|.++.-
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667776666665566677788888888888888884
No 139
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.55 E-value=2.5e+02 Score=27.91 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=38.2
Q ss_pred hhhhHHhhhh-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 545 ADDIINEREK-----LKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDE 619 (715)
Q Consensus 545 ~~~~i~~rEk-----lkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrE 619 (715)
-..+|.+|.. +.+...-|...++-=+.-+++|+..++||++.+.+++++... +++.+.+.=-++++......=
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a--~~~~~~~~~ea~L~~~~~~~~ 112 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES--EFLIKKKNLEQDLKNSINQNI 112 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666653 223333333333333334555555555666555554432212 222222333333444443333
Q ss_pred Hhhhh-hHHHHHHHHHHHh
Q 005087 620 ENMNL-KEKIRIEVRKELC 637 (715)
Q Consensus 620 eea~~-kE~~R~eiR~eLe 637 (715)
+++.. -+.+|.+-..+|-
T Consensus 113 ~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 113 EDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 33332 2345555544444
No 140
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.25 E-value=4.1e+02 Score=27.61 Aligned_cols=10 Identities=10% Similarity=0.395 Sum_probs=6.2
Q ss_pred hhhhHHhhhh
Q 005087 545 ADDIINEREK 554 (715)
Q Consensus 545 ~~~~i~~rEk 554 (715)
-..+|.+|++
T Consensus 30 i~~~l~eR~~ 39 (250)
T PRK14474 30 IIQVMKKRQQ 39 (250)
T ss_pred HHHHHHHHHH
Confidence 4566777765
No 141
>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs.; GO: 0005634 nucleus
Probab=42.24 E-value=19 Score=35.03 Aligned_cols=43 Identities=30% Similarity=0.426 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHh
Q 005087 608 LEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRAL 653 (715)
Q Consensus 608 lEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vL 653 (715)
++++|++....|+++.+|++.|..+|..|- .-.+|-..||+++
T Consensus 65 I~emR~~~~e~e~~~slKqk~RervqPKmG---kldIDYq~LhdAF 107 (129)
T PF04037_consen 65 IEEMRQALPEKEDEKSLKQKQRERVQPKMG---KLDIDYQKLHDAF 107 (129)
T ss_pred cHHHHHHhhcccchhhHHHHHHHHhCcccC---cccccHHHHHHHH
Confidence 788999999999999999999999999843 5566666666654
No 142
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=42.02 E-value=3.4e+02 Score=28.06 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 005087 667 EVHAAYKR 674 (715)
Q Consensus 667 EIKKAYRK 674 (715)
-|+.|++.
T Consensus 194 li~~al~~ 201 (281)
T PRK06669 194 LVKELLKE 201 (281)
T ss_pred HHHHHHHH
Confidence 34444443
No 143
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=41.89 E-value=3.1e+02 Score=26.69 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005087 570 ASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKL 639 (715)
Q Consensus 570 asRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~ 639 (715)
..|+..|+..-++|.++++......+..-..-...+...+++++..+++.+.. .+.++..++.+++++
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~--~e~~~~~a~~ea~~~ 124 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAA--AEQAKADLEASIARR 124 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 144
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=41.28 E-value=1.1e+02 Score=32.43 Aligned_cols=9 Identities=22% Similarity=0.759 Sum_probs=4.5
Q ss_pred hHHHHHHHH
Q 005087 172 KLHKEWEKA 180 (715)
Q Consensus 172 ~~reqWEka 180 (715)
.+-..|-.+
T Consensus 30 ~~A~~w~~~ 38 (321)
T PF07946_consen 30 RIAKAWFES 38 (321)
T ss_pred HHHHHHHHH
Confidence 344566544
No 145
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=40.95 E-value=3.8e+02 Score=26.72 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=5.8
Q ss_pred HHHHHhCcCC
Q 005087 648 SLLRALGIHV 657 (715)
Q Consensus 648 slY~vLGV~~ 657 (715)
.|..+-|+..
T Consensus 139 ~Le~iAglT~ 148 (201)
T PF12072_consen 139 ELEEIAGLTA 148 (201)
T ss_pred HHHHHhCCCH
Confidence 4556666664
No 146
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=40.62 E-value=83 Score=31.88 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=44.9
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
-..+|.+.|...... ..+.-++--|.-.--+.|||+......-+...|.+---++++||..|.-
T Consensus 7 ~~~ff~~Fg~e~~~~--~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~ 70 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFK--IDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKD 70 (168)
T ss_pred HHHHHHHhccccCCC--CCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHh
Confidence 346889998776532 3333444478888889999996543333334788889999999999863
No 147
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=40.19 E-value=2.6e+02 Score=34.67 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005087 560 EYKRAMEEEWASRQRQLQIQA 580 (715)
Q Consensus 560 eyK~A~EeEWasRQ~ELq~QA 580 (715)
|.++-.|||-.+|-+|+++.+
T Consensus 231 E~qkreeEE~~r~eeEEer~~ 251 (1064)
T KOG1144|consen 231 ERQKREEEERLRREEEEERRR 251 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 148
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=40.04 E-value=2.2e+02 Score=28.18 Aligned_cols=54 Identities=30% Similarity=0.419 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005087 566 EEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEEN 621 (715)
Q Consensus 566 EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEee 621 (715)
-.||+-|-++|+.=.++.-.+=+ ++=.+|--+++....+||+.+++...++.+.
T Consensus 86 ~~EW~~RE~eI~~lQe~RLell~--~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~ 139 (154)
T PF14738_consen 86 WKEWAFREEEIQELQERRLELLK--KMLQEREKEQEEANEQRLERLWQKKQKEKER 139 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888887777654333222211 2222333356667777887777766554443
No 149
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=39.85 E-value=73 Score=34.79 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHh
Q 005087 576 LQIQAEEAQRLRKKKRAESMR--LLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRAL 653 (715)
Q Consensus 576 Lq~QAEEAqRlRKrkKAe~~R--~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vL 653 (715)
||...+||-+.--++|||..| +...|.-++.++++.|...-..|++-- ..+-.+|. .+.+-.-+||..-
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkvVeAeaevP------~A~aeAfr---~G~lGvmDYy~~~ 299 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKVVEAEAEVP------LAMAEAFR---SGNLGVMDYYNLK 299 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhch------HHHHHHHH---cCCCcchhhhhhh
Confidence 444444444444445555444 344566667788888876665555422 11222222 3555566789988
Q ss_pred CcCC
Q 005087 654 GIHV 657 (715)
Q Consensus 654 GV~~ 657 (715)
.|..
T Consensus 300 Ni~a 303 (316)
T PF12127_consen 300 NIQA 303 (316)
T ss_pred cccc
Confidence 8874
No 150
>PRK13665 hypothetical protein; Provisional
Probab=39.68 E-value=96 Score=33.87 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcC
Q 005087 598 LDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIH 656 (715)
Q Consensus 598 lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~ 656 (715)
...|.-++.++++.|...-..|++-- ..+-.+|. .+.+-.-+||..-.|.
T Consensus 258 vA~EQEmkA~v~emrAkvVeAeaeVP------~Ama~A~r---~G~lGvmDYy~~kNi~ 307 (316)
T PRK13665 258 VALEQEMKAKVQEMRAKVVEAEAEVP------LAMAEALR---SGNLGVMDYYNMKNIQ 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhch------HHHHHHHH---cCCCchhhhhhhhccc
Confidence 44566678888888877766665522 11112222 3444455688877776
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.40 E-value=2.5e+02 Score=33.50 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005087 560 EYKRAMEEEWASRQRQLQIQ----AEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMN 623 (715)
Q Consensus 560 eyK~A~EeEWasRQ~ELq~Q----AEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~ 623 (715)
.|.....+|-++|-..|+.| .++.+.++.+++.= -++..+..+|++++++.|++-.+-++
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l----~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSL----RESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888886555544 44666666654422 14445556677777777666655444
No 152
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.58 E-value=4.1e+02 Score=26.43 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHH
Q 005087 663 PLSQEVHAAYKRAL 676 (715)
Q Consensus 663 AT~aEIKKAYRKLA 676 (715)
.++.+|..|.--.|
T Consensus 192 ~~~~~isaALgyva 205 (302)
T PF10186_consen 192 LPDEEISAALGYVA 205 (302)
T ss_pred CCHHHHHHHHHHHH
Confidence 44566666655444
No 153
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=38.52 E-value=1.6e+02 Score=29.92 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005087 561 YKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELC 637 (715)
Q Consensus 561 yK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe 637 (715)
-+++.++.|..+ +++++--||+..|.++ .-|..-.+.|.++.|+..-.+ .++-++|.+...|.
T Consensus 34 k~~~l~e~l~~~--e~~r~v~ea~~~ke~~-------~Kl~E~iekkieeaR~dav~k-----S~~Vi~GrVtEqla 96 (175)
T COG4741 34 KARELEETLQKA--ERERLVNEAQARKEEE-------WKLKEWIEKKIEEAREDAVRK-----SRAVILGRVTEQLA 96 (175)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----hHHHHhhhhHhhhc
Confidence 356678888776 5666666664444322 233444456677777655443 23456666766654
No 154
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=37.92 E-value=3.6e+02 Score=25.64 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=5.6
Q ss_pred hhhhHHhhhh
Q 005087 545 ADDIINEREK 554 (715)
Q Consensus 545 ~~~~i~~rEk 554 (715)
-..+|.+|+.
T Consensus 47 i~~~l~~R~~ 56 (156)
T CHL00118 47 LLKVLDERKE 56 (156)
T ss_pred HHHHHHHHHH
Confidence 3456666654
No 155
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=3.8e+02 Score=28.30 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=24.0
Q ss_pred hhHHhhhhccccHHHHH--HHHHHHHHHHHHHHHHH
Q 005087 547 DIINEREKLKETDEYKR--AMEEEWASRQRQLQIQA 580 (715)
Q Consensus 547 ~~i~~rEklkEtdeyK~--A~EeEWasRQ~ELq~QA 580 (715)
+..-+|-+.+|-.|+.. |.-+-|-.|.+++++|+
T Consensus 95 g~~ie~~~e~eaaE~~el~a~N~a~N~~~~~~R~~R 130 (227)
T KOG4691|consen 95 GVLIERKAEKEAAEHRELMAWNQAENRRLHELRIAR 130 (227)
T ss_pred hhHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34446777788777765 44567888888888883
No 156
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.98 E-value=2.8e+02 Score=32.54 Aligned_cols=54 Identities=31% Similarity=0.400 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHH-HHHhCcCC
Q 005087 603 RQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASL-LRALGIHV 657 (715)
Q Consensus 603 RqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMasl-Y~vLGV~~ 657 (715)
+..+.+.++|+..+.-+++...|+........+|+++.-. .+-..| -++|.|-.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RIlEIv~ 498 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRILEIVK 498 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999998866433 332232 45666653
No 157
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=36.43 E-value=4.8e+02 Score=28.31 Aligned_cols=12 Identities=8% Similarity=0.410 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 005087 559 DEYKRAMEEEWA 570 (715)
Q Consensus 559 deyK~A~EeEWa 570 (715)
.|.++....+|.
T Consensus 92 EE~Rkt~~~q~q 103 (276)
T PF12037_consen 92 EERRKTLQQQTQ 103 (276)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 158
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=36.26 E-value=4.8e+02 Score=28.48 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=5.2
Q ss_pred HHHHHHHhCcC
Q 005087 646 MASLLRALGIH 656 (715)
Q Consensus 646 MaslY~vLGV~ 656 (715)
+..+|..+-..
T Consensus 135 ~~~~y~~~d~~ 145 (332)
T TIGR01541 135 LHAYYAAEDAL 145 (332)
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 159
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.63 E-value=1.5e+02 Score=35.17 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005087 560 EYKRAMEEEWASRQRQLQIQAE----EAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKE 635 (715)
Q Consensus 560 eyK~A~EeEWasRQ~ELq~QAE----EAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~e 635 (715)
+|..--.+|..+-.-+|++|.+ +-+-++.+++ -+-+|..|...|.++.-+.|..-+.-++ ++|-..-..
T Consensus 577 ~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~----~i~e~a~~La~R~eea~e~qe~L~~~~~---~L~~~~~~~ 649 (741)
T KOG4460|consen 577 LKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERK----SLREMAERLADRYEEAKEKQEDLMNRMK---KLLHSFHSE 649 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHhccccc
Confidence 3444455666666666655543 2222222222 1336677777788877777766666555 777777777
Q ss_pred HhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 005087 636 LCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRAS 685 (715)
Q Consensus 636 Le~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~ 685 (715)
|..+..+-+|...-+..+|+.... -.+.-+.+++-+.| -++|=-++.
T Consensus 650 lp~l~~AErdFk~Elq~~~~~~~~-L~~~iET~~~~~~K--Q~~H~~~v~ 696 (741)
T KOG4460|consen 650 LPVLSDAERDFKKELQLIPDQLRH-LGNAIETVTMKKDK--QQQHMEKVL 696 (741)
T ss_pred CCcchhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHH
Confidence 776666667766666666666430 01223345555555 677765543
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.44 E-value=4.1e+02 Score=25.47 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005087 585 RLRKKKRAESMRLLDMERRQKQRLEEIRETQ 615 (715)
Q Consensus 585 RlRKrkKAe~~R~lemERRqKQRlEe~RE~q 615 (715)
..++..+...+|+..++..-+...+++++.+
T Consensus 120 ~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 120 ELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444566666666666666666666
No 161
>PRK00106 hypothetical protein; Provisional
Probab=35.13 E-value=6.8e+02 Score=29.27 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 005087 564 AMEEEWASRQRQLQIQ 579 (715)
Q Consensus 564 A~EeEWasRQ~ELq~Q 579 (715)
..++|+..++.+++.+
T Consensus 76 EaeeEi~~~R~ElEke 91 (535)
T PRK00106 76 EAKEEARKYREEIEQE 91 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555433
No 162
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.81 E-value=3e+02 Score=30.29 Aligned_cols=73 Identities=27% Similarity=0.247 Sum_probs=50.8
Q ss_pred cchhhhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005087 541 TSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAE----------EAQRLRKKKRAESMRLLDMERRQKQRLEE 610 (715)
Q Consensus 541 ~~~~~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAE----------EAqRlRKrkKAe~~R~lemERRqKQRlEe 610 (715)
|+--+--|---|.|||||...-+-.|-|-..=.-||.|-+| |||-+-|++|.| .+..||=+++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkE-------IkQLkQvieT 135 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKE-------IKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 33444456678999999988877777666655555555544 888777777766 3445888999
Q ss_pred HHHHHHHHHH
Q 005087 611 IRETQKKDEE 620 (715)
Q Consensus 611 ~RE~qkKrEe 620 (715)
+|......-+
T Consensus 136 mrssL~ekDk 145 (305)
T PF15290_consen 136 MRSSLAEKDK 145 (305)
T ss_pred HHhhhchhhh
Confidence 9988875533
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.10 E-value=4.8e+02 Score=25.94 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=4.4
Q ss_pred HHHHHhCc
Q 005087 648 SLLRALGI 655 (715)
Q Consensus 648 slY~vLGV 655 (715)
.+..+..|
T Consensus 152 ~l~~ifpI 159 (302)
T PF10186_consen 152 ELSEIFPI 159 (302)
T ss_pred HHHHHhCc
Confidence 45555556
No 164
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=34.07 E-value=4.4e+02 Score=25.49 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005087 571 SRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKL 639 (715)
Q Consensus 571 sRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~ 639 (715)
.|+..|+..-.+|.++++...+..+-.-.--.-.++...++++..+++.+..- +.++.+.+.++++.
T Consensus 37 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~--~e~~~~a~~e~~r~ 103 (161)
T COG0711 37 ERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIA--EEIKAEAEEELERI 103 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
No 165
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=34.06 E-value=2.5e+02 Score=31.88 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=7.7
Q ss_pred hhhhccccHHHHHH
Q 005087 551 EREKLKETDEYKRA 564 (715)
Q Consensus 551 ~rEklkEtdeyK~A 564 (715)
-+.+++=+++++.=
T Consensus 273 l~~~~P~~~~~~~~ 286 (429)
T PRK00247 273 LERKYPLTDEFKEH 286 (429)
T ss_pred HHHhcCCCcchHHH
Confidence 44566666655543
No 166
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=33.91 E-value=4.1e+02 Score=25.10 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=7.4
Q ss_pred hhhhhhHHhhhhc
Q 005087 543 AFADDIINEREKL 555 (715)
Q Consensus 543 ~~~~~~i~~rEkl 555 (715)
.+-..+|.+|+..
T Consensus 30 kPi~~~l~~R~~~ 42 (141)
T PRK08476 30 KPLLKFMDNRNAS 42 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3445667776543
No 167
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=33.31 E-value=4.2e+02 Score=25.01 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHH
Q 005087 575 QLQIQAE-EAQRLRKKKRAESMR-LLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRA 652 (715)
Q Consensus 575 ELq~QAE-EAqRlRKrkKAe~~R-~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~v 652 (715)
+|..+|+ +|.+....++++... +.+++...+.++++..+...++.+..-.+...+.........+....-=...++..
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 005087 653 L 653 (715)
Q Consensus 653 L 653 (715)
+
T Consensus 81 ~ 81 (198)
T PF01991_consen 81 V 81 (198)
T ss_dssp H
T ss_pred H
No 168
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.24 E-value=4.6e+02 Score=34.00 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=0.0
Q ss_pred CccchhhhhhHHhhhhccccHHHHHHHHH----------HHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHH--
Q 005087 539 SLTSAFADDIINEREKLKETDEYKRAMEE----------EWASRQRQLQIQAE----EAQRLRKKKRAESMRLLDMER-- 602 (715)
Q Consensus 539 ~~~~~~~~~~i~~rEklkEtdeyK~A~Ee----------EWasRQ~ELq~QAE----EAqRlRKrkKAe~~R~lemER-- 602 (715)
+.++-.-.+|...++-|.+..+-..|.|+ |.+.|-++|+.++. ||.-.-|.+-+..+++++.|.
T Consensus 1584 ~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~ 1663 (1758)
T KOG0994|consen 1584 DAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGL 1663 (1758)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHh
Q 005087 603 ----------------------RQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRAL 653 (715)
Q Consensus 603 ----------------------RqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vL 653 (715)
..++|.+.+|++.++--..++.|-+.=-.....+++.+++-.|.+.-|..|
T Consensus 1664 ~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~L 1736 (1758)
T KOG0994|consen 1664 EILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGL 1736 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.13 E-value=6.4e+02 Score=27.10 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHH
Q 005087 663 PLSQEVHAAYKRALL 677 (715)
Q Consensus 663 AT~aEIKKAYRKLAL 677 (715)
..=.||.+|.=.+||
T Consensus 166 V~W~EINAA~Gq~~L 180 (314)
T PF04111_consen 166 VEWNEINAAWGQTAL 180 (314)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 456899999988887
No 170
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=32.55 E-value=4.4e+02 Score=24.94 Aligned_cols=68 Identities=26% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005087 570 ASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKL 639 (715)
Q Consensus 570 asRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~ 639 (715)
..|+..|...-++|...+....+.....-..-.-.+....++++..++..+.. ++.++.+++.+.+++
T Consensus 35 ~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~--~~~i~~~A~~ea~~~ 102 (159)
T PRK13461 35 DSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENV--YEEIVKEAHEEADLI 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 171
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=32.15 E-value=1.8e+02 Score=34.02 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHH
Q 005087 664 LSQEVHAAYKRAL 676 (715)
Q Consensus 664 T~aEIKKAYRKLA 676 (715)
-+.|| ++||||+
T Consensus 375 Ld~EI-~~YRkLL 386 (546)
T KOG0977|consen 375 LDAEI-AAYRKLL 386 (546)
T ss_pred HHhHH-HHHHHHh
Confidence 45566 6788875
No 172
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=32.06 E-value=3.1e+02 Score=23.02 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=41.6
Q ss_pred hhhccccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 005087 552 REKLKETDEYKRAMEEEWASRQ-----RQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKE 626 (715)
Q Consensus 552 rEklkEtdeyK~A~EeEWasRQ-----~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE 626 (715)
..+|..-..+...-...|.... .++..-..-..++..+...-...+..++......-+.+.+.....+.-.-+++
T Consensus 18 ~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 18 EEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444 33433333333333333322222333333334444444455555555566677
Q ss_pred HHHHHHHHHHhhhhhhccc
Q 005087 627 KIRIEVRKELCKLETTCID 645 (715)
Q Consensus 627 ~~R~eiR~eLe~~e~~c~D 645 (715)
+.+...+.+..+.+..-+|
T Consensus 98 ~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 98 RRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666655444
No 173
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.35 E-value=3e+02 Score=30.43 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHhhhhhhcccHHHH
Q 005087 600 MERRQKQRLEEIRETQKKDEE-----NMNLKEKIRIEVRKELCKLETTCIDMASL 649 (715)
Q Consensus 600 mERRqKQRlEe~RE~qkKrEe-----ea~~kE~~R~eiR~eLe~~e~~c~DMasl 649 (715)
...||+.|+.++..+.++-+. +.+..++++.. +++......||..+
T Consensus 40 sI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~----Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEED----IKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH----HHHHHhhHHHHHhh
Confidence 356788888888887776643 33333444443 33333444556543
No 174
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.02 E-value=4e+02 Score=29.85 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=5.4
Q ss_pred hhhhHHhhhh
Q 005087 545 ADDIINEREK 554 (715)
Q Consensus 545 ~~~~i~~rEk 554 (715)
-..+|.+|++
T Consensus 26 i~~~l~~R~~ 35 (445)
T PRK13428 26 VRRLMAARQD 35 (445)
T ss_pred HHHHHHHHHH
Confidence 3456666643
No 175
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=30.20 E-value=1.8e+02 Score=29.67 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 005087 600 MERRQKQRLEEIRETQKKDEENMN 623 (715)
Q Consensus 600 mERRqKQRlEe~RE~qkKrEeea~ 623 (715)
|.....+..++++|.+++.|+++.
T Consensus 92 mQEE~dakA~~~kEKq~q~EEEKR 115 (190)
T PF06936_consen 92 MQEELDAKAEEYKEKQKQEEEEKR 115 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556667766666665544
No 176
>PRK12705 hypothetical protein; Provisional
Probab=29.98 E-value=4.7e+02 Score=30.30 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005087 557 ETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKEL 636 (715)
Q Consensus 557 EtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eL 636 (715)
|...++...|.|+..|+.+++++ -.|+.++...-..|.-.|++|..+ |++-++....++.+...+ +.+....|
T Consensus 60 ~~~~~~~~~e~e~~~~~~~~~~~---e~rl~~~e~~l~~~~~~l~~~~~~-l~~~~~~l~~~~~~~~~~---~~~~~~~L 132 (508)
T PRK12705 60 LLLRERNQQRQEARREREELQRE---EERLVQKEEQLDARAEKLDNLENQ-LEEREKALSARELELEEL---EKQLDNEL 132 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred hhhh
Q 005087 637 CKLE 640 (715)
Q Consensus 637 e~~e 640 (715)
++..
T Consensus 133 e~ia 136 (508)
T PRK12705 133 YRVA 136 (508)
T ss_pred HHHh
No 177
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.27 E-value=6e+02 Score=31.32 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH-HHHHHHHH---Hhhhhhhccc
Q 005087 606 QRLEEIRETQKKDEENMNLKEK-IRIEVRKE---LCKLETTCID 645 (715)
Q Consensus 606 QRlEe~RE~qkKrEeea~~kE~-~R~eiR~e---Le~~e~~c~D 645 (715)
|-|+++|++..+.|-.+.-+|+ +|++|+.- |+..+++|-.
T Consensus 587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999888877666554 67777543 3333555533
No 178
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=28.83 E-value=3.4e+02 Score=32.28 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 005087 599 DMERRQKQRLEEIRETQKKDEENMNLKE 626 (715)
Q Consensus 599 emERRqKQRlEe~RE~qkKrEeea~~kE 626 (715)
++|+|-.+|.++....-+..+.+.-..+
T Consensus 335 eLE~rV~eRTadL~~~n~~l~~EIaer~ 362 (603)
T COG4191 335 ELERRVEERTADLTRANARLQAEIAERE 362 (603)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6788888888888666544444444333
No 179
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.78 E-value=71 Score=33.07 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=8.4
Q ss_pred hhhhhhHHhhhhccc
Q 005087 543 AFADDIINEREKLKE 557 (715)
Q Consensus 543 ~~~~~~i~~rEklkE 557 (715)
+....+.-++||+++
T Consensus 62 ~i~~~~liD~ekm~~ 76 (201)
T COG1422 62 TILQKLLIDQEKMKE 76 (201)
T ss_pred HHHHHHhccHHHHHH
Confidence 444455556676654
No 180
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.76 E-value=4.7e+02 Score=24.15 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=10.8
Q ss_pred hhhHHhhhhccccHHHHHHH
Q 005087 546 DDIINEREKLKETDEYKRAM 565 (715)
Q Consensus 546 ~~~i~~rEklkEtdeyK~A~ 565 (715)
..+|+-..-+.+++.+|.+.
T Consensus 19 Ia~Vd~~~v~~~~~~~k~~~ 38 (158)
T PF03938_consen 19 IAVVDVDKVFQESPAGKDAQ 38 (158)
T ss_dssp EEEE-HHHHHHHHHHHHTHH
T ss_pred EEEeeHHHHHHhCHHHHHHH
Confidence 34555555556666666554
No 181
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.52 E-value=6e+02 Score=25.32 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005087 570 ASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRET 614 (715)
Q Consensus 570 asRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~ 614 (715)
..|+..|+-.-++|.+.+....+..+..-+.-+.+++..+++|++
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788877777777776654432222233333444445555544
No 182
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.30 E-value=4.4e+02 Score=30.57 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005087 568 EWASRQRQLQIQ----AEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKK 617 (715)
Q Consensus 568 EWasRQ~ELq~Q----AEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkK 617 (715)
|++.|+.+|..| ++|-.|||+| ...+..|..++|+..|++..+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r-------~~~id~~i~~av~~~~~~~~~ 116 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKR-------EQSIDQQIQQAVQSETQELTK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHhhhHHHHH
Confidence 444555555543 3444444443 346777888888777755543
No 183
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.25 E-value=6.8e+02 Score=27.58 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhCCCCCCC
Q 005087 668 VHAAYKRALLRFHPDRASK 686 (715)
Q Consensus 668 IKKAYRKLALKfHPDRn~~ 686 (715)
...-|-...+...|....+
T Consensus 267 ~~~~y~~~~r~~~~~~~aG 285 (309)
T TIGR00570 267 VRQGYLNHVRAASPQDIAG 285 (309)
T ss_pred ccccHHHHHhccCcccccC
Confidence 3344555555555555554
No 184
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=27.59 E-value=4.9e+02 Score=31.76 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=4.3
Q ss_pred HhCCCCCC
Q 005087 678 RFHPDRAS 685 (715)
Q Consensus 678 KfHPDRn~ 685 (715)
+|||++..
T Consensus 417 ~~~~~~rs 424 (811)
T KOG4364|consen 417 KHWGMRRS 424 (811)
T ss_pred ccchhhhh
Confidence 45666554
No 185
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=27.52 E-value=6e+02 Score=24.99 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=7.5
Q ss_pred hhhhhhHHhhhhc
Q 005087 543 AFADDIINEREKL 555 (715)
Q Consensus 543 ~~~~~~i~~rEkl 555 (715)
.+-..+|.+|...
T Consensus 54 ~PI~~~l~~R~~~ 66 (181)
T PRK13454 54 PRIGAVLAERQGT 66 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3445667777553
No 186
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=27.52 E-value=6.9e+02 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=12.7
Q ss_pred HHHHhCcCCCCCCCCCHHHHHHHHHHHHHH
Q 005087 649 LLRALGIHVGGSFRPLSQEVHAAYKRALLR 678 (715)
Q Consensus 649 lY~vLGV~~eGg~tAT~aEIKKAYRKLALK 678 (715)
.-.+||.... .++..|...++.+...
T Consensus 146 AeKIi~~el~----~~~e~i~~lv~~al~~ 171 (255)
T TIGR03825 146 AEKVIGVSLA----EDKNAFQALVRQVLSE 171 (255)
T ss_pred HHHHHHHHHc----cCHHHHHHHHHHHHHh
Confidence 3455665432 2344565666554443
No 187
>PRK01490 tig trigger factor; Provisional
Probab=27.42 E-value=8.3e+02 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 005087 626 EKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFH 680 (715)
Q Consensus 626 E~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfH 680 (715)
+.++.+++..-++.....+=|..+.+.-||. .|++||...+.++|..|-
T Consensus 337 e~~~~~~~~~A~~~vk~~lil~~Ia~~e~i~------vs~eei~~~~~~~a~~~~ 385 (435)
T PRK01490 337 EEPREEFREQAERRVKLGLLLDEIAKAEEIE------VSDEEVKAEIEEMASQYG 385 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHcC
Confidence 3444444444333333444456777778887 669999999999998875
No 188
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=27.41 E-value=5.8e+02 Score=29.59 Aligned_cols=46 Identities=33% Similarity=0.307 Sum_probs=28.0
Q ss_pred hhhhHHhhhhccccHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 005087 545 ADDIINEREKLKETDEYK-RAMEEEWASRQRQLQIQAE-EAQRLRKKK 590 (715)
Q Consensus 545 ~~~~i~~rEklkEtdeyK-~A~EeEWasRQ~ELq~QAE-EAqRlRKrk 590 (715)
.++.|-.=+.+++|-|.- .|+|+--..-.++||+|-+ |-+++|..+
T Consensus 325 ~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEK 372 (593)
T KOG4807|consen 325 EDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEK 372 (593)
T ss_pred hhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666654 4577777777788888765 455555544
No 189
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=27.39 E-value=3.1e+02 Score=32.45 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005087 575 QLQIQAEEAQRL---RKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEV 632 (715)
Q Consensus 575 ELq~QAEEAqRl---RKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~ei 632 (715)
+|+++..++++. |++++++.+..++.|| +.++-++-+...++.++++++.|++|.+-
T Consensus 198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaer-k~~~~qEe~Rqk~d~~~~~~eqekiR~~e 257 (591)
T KOG2412|consen 198 ELQAIQREKQRKEQIRERKERSEEKREEAER-KRRAHQEELRQKEDEEAELQEQEKIRAEE 257 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555554442 2333333222333332 33333333333344444455566677665
No 190
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=27.37 E-value=8.3e+02 Score=26.57 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 005087 566 EEEWASRQRQLQIQAE 581 (715)
Q Consensus 566 EeEWasRQ~ELq~QAE 581 (715)
..+|+-|...|+-|++
T Consensus 88 rv~~EE~Rkt~~~q~q 103 (276)
T PF12037_consen 88 RVEAEERRKTLQQQTQ 103 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666665555
No 191
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=27.37 E-value=86 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.7
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHH
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALL 677 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLAL 677 (715)
.|.++++.|||++.||...+-..||....+++-
T Consensus 31 S~~~flr~lG~~~tGG~~g~~~~lreQ~~rL~~ 63 (161)
T PF04796_consen 31 SLSEFLRRLGLSPTGGRRGTITRLREQMERLFA 63 (161)
T ss_pred CHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHh
Confidence 488999999999988877788899999888863
No 192
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=26.92 E-value=2.7e+02 Score=32.96 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 005087 608 LEEIRETQKK 617 (715)
Q Consensus 608 lEe~RE~qkK 617 (715)
.|..|-.+.|
T Consensus 250 qekiR~~eek 259 (591)
T KOG2412|consen 250 QEKIRAEEEK 259 (591)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 193
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=26.84 E-value=2.9e+02 Score=32.69 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 005087 599 DMERRQKQRLEEIRETQKKDEENMN 623 (715)
Q Consensus 599 emERRqKQRlEe~RE~qkKrEeea~ 623 (715)
|..||---|-|=.|..|.+-.++++
T Consensus 439 e~arrefirqey~rrkqlklmed~d 463 (708)
T KOG3654|consen 439 EVARREFIRQEYERRKQLKLMEDLD 463 (708)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455555666666666655
No 194
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.82 E-value=6.6e+02 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005087 603 RQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELC 637 (715)
Q Consensus 603 RqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe 637 (715)
-..+++++++....+.+......++-...++.+|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333333344433
No 195
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.45 E-value=4.1e+02 Score=28.72 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=35.2
Q ss_pred hhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005087 545 ADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRET 614 (715)
Q Consensus 545 ~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~ 614 (715)
-.+.-.-||||.|+. +..+|...+-.+|+-.-+|.|-.-|+-+.|..||-+|-++.-.-+..++-.
T Consensus 134 ke~~ee~kekl~E~~----~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 134 KEDYEELKEKLEELQ----KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 334444445554443 344455555555655555655555555556667777766655444444433
No 196
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.02 E-value=3.6e+02 Score=33.65 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=22.4
Q ss_pred ccccHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 005087 555 LKETDEYKRAMEEEWAS------RQRQLQIQAEEAQRLR 587 (715)
Q Consensus 555 lkEtdeyK~A~EeEWas------RQ~ELq~QAEEAqRlR 587 (715)
-.+..+|.+..+++|.. +..+|+.|........
T Consensus 794 r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 832 (1201)
T PF12128_consen 794 RAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQEL 832 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34557899999999998 6666666655444333
No 197
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=26.02 E-value=3.9e+02 Score=23.71 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=1.7
Q ss_pred hhHHhh
Q 005087 547 DIINER 552 (715)
Q Consensus 547 ~~i~~r 552 (715)
.+|..|
T Consensus 26 ~~l~~R 31 (132)
T PF00430_consen 26 KFLDER 31 (132)
T ss_dssp HHCS--
T ss_pred HHHHHH
Confidence 344444
No 198
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=25.92 E-value=6e+02 Score=24.45 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005087 543 AFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMR-LLDMERRQKQRLEEIRETQKKDEEN 621 (715)
Q Consensus 543 ~~~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R-~lemERRqKQRlEe~RE~qkKrEee 621 (715)
.+-..+|.+|.+-=..+--.... ++++.+...++++..-..++.++.. +-+...+..+..++.++..+++.+.
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~------~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~ 106 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQR------LREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKR 106 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hhhhHHHHHHHHHHHhhhhhhcccHH
Q 005087 622 --MNLKEKIRIEVRKELCKLETTCIDMA 647 (715)
Q Consensus 622 --a~~kE~~R~eiR~eLe~~e~~c~DMa 647 (715)
..++..+..+-..++..+...-.+++
T Consensus 107 ~~~~A~~~I~~e~~~a~~el~~e~~~lA 134 (167)
T PRK14475 107 RAEMAERKIAQAEAQAAADVKAAAVDLA 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.85 E-value=7.8e+02 Score=31.27 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=11.7
Q ss_pred hhccccHHHHHH--HHHHHHHHH
Q 005087 553 EKLKETDEYKRA--MEEEWASRQ 573 (715)
Q Consensus 553 EklkEtdeyK~A--~EeEWasRQ 573 (715)
+||+|-+-.|-- +=.||.+|.
T Consensus 252 ~Kl~ElekmkiqleqlqEfkSki 274 (1243)
T KOG0971|consen 252 AKLKELEKMKIQLEQLQEFKSKI 274 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544332 336898874
No 200
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.54 E-value=5.6e+02 Score=30.23 Aligned_cols=21 Identities=24% Similarity=0.023 Sum_probs=14.4
Q ss_pred ccCccchhhhhhcccccCCCC
Q 005087 278 NSSSKEADFQFRRETVMEDPF 298 (715)
Q Consensus 278 ~~~~~~~d~~f~~e~~~~d~~ 298 (715)
-.+---.|++.|.|.-..|++
T Consensus 333 M~~~~a~~d~~gae~ep~Dln 353 (641)
T KOG3915|consen 333 MSFERADDDQQGAESEPDDLN 353 (641)
T ss_pred hccccccccccccccCccccc
Confidence 355555677788787777766
No 201
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=25.43 E-value=69 Score=29.17 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.5
Q ss_pred CceEEEecC---CCCccceEEEeCccch
Q 005087 34 DNVVLIDVD---SERLDNVILIDVPESL 58 (715)
Q Consensus 34 ~nvv~IDvD---sd~~~nVIiiD~pes~ 58 (715)
..+++||.| +.--.++||||.|-.+
T Consensus 29 ~~~~~vd~D~~~~~~~yd~VIiD~p~~~ 56 (139)
T cd02038 29 KRVLLLDADLGLANLDYDYIIIDTGAGI 56 (139)
T ss_pred CcEEEEECCCCCCCCCCCEEEEECCCCC
Confidence 458899999 2222589999999765
No 202
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.36 E-value=3.3e+02 Score=26.05 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=22.9
Q ss_pred hhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 547 DIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEA 583 (715)
Q Consensus 547 ~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEA 583 (715)
.+=+..|..|.|-+-=.++.++..+.+..|+-|++..
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444556666665555666667777777777776543
No 203
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=25.34 E-value=6.2e+02 Score=24.42 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=5.2
Q ss_pred hhhhHHhhhh
Q 005087 545 ADDIINEREK 554 (715)
Q Consensus 545 ~~~~i~~rEk 554 (715)
-..+|.+|..
T Consensus 43 i~~~l~~R~~ 52 (175)
T PRK14472 43 ILSALEEREK 52 (175)
T ss_pred HHHHHHHHHH
Confidence 3455666543
No 204
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=25.03 E-value=6.8e+02 Score=24.74 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHHHhhh
Q 005087 622 MNLKEKIRIEVRKELCKL 639 (715)
Q Consensus 622 a~~kE~~R~eiR~eLe~~ 639 (715)
.+.++..+.++|.++-.+
T Consensus 110 e~Ek~~Al~elr~eva~L 127 (154)
T PRK06568 110 QNQKSTASKELQDEFCDE 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555554433
No 205
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.58 E-value=8.1e+02 Score=27.04 Aligned_cols=88 Identities=23% Similarity=0.364 Sum_probs=51.6
Q ss_pred hhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 005087 545 ADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMN- 623 (715)
Q Consensus 545 ~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~- 623 (715)
-.-+.+.||.|-|-.|--+-.|.|..+--.+|+-|-.-++..-.|-+-|.+|+- |+---||++-+++.-.-+-...+
T Consensus 26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~K--ek~e~q~~q~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNK--EKQEDQRVQFYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888877777777777777766666554433333333333333432 34445666666665554444433
Q ss_pred --hhHHHHHHHHH
Q 005087 624 --LKEKIRIEVRK 634 (715)
Q Consensus 624 --~kE~~R~eiR~ 634 (715)
.||++|.-||.
T Consensus 104 ~aikeql~kyiRe 116 (333)
T KOG1853|consen 104 HAIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 47777777764
No 206
>PHA00448 hypothetical protein
Probab=24.32 E-value=1e+02 Score=27.48 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 005087 581 EEAQRLRKKKRAESMRLLDMERRQ 604 (715)
Q Consensus 581 EEAqRlRKrkKAe~~R~lemERRq 604 (715)
-||+|+.+.+|++++|+.+|.+++
T Consensus 18 ~EAkrl~~~Ar~~A~~A~~lakqs 41 (70)
T PHA00448 18 VEAKRLNDKARKDATRARRLAKQS 41 (70)
T ss_pred HHHHHhhHHHHHhHHHHHHHHHHH
Confidence 378899998888888877777644
No 207
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=23.84 E-value=3.2e+02 Score=29.54 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005087 605 KQRLEEIRETQKKDEENMNLKEKIRI 630 (715)
Q Consensus 605 KQRlEe~RE~qkKrEeea~~kE~~R~ 630 (715)
-.+|.++..+..+.++....+...|.
T Consensus 309 i~~l~~i~~ei~~~e~~~~~~~~~r~ 334 (387)
T PF07767_consen 309 IDRLKEIAKEIEKEEEEREKRRERRK 334 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777665555444
No 208
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.61 E-value=7.9e+02 Score=25.01 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 005087 605 KQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRA 684 (715)
Q Consensus 605 KQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn 684 (715)
...++..+++...-+..+...+..|.++..-|..+... + .-+-.+.+|-. .++-.+--.+ |+---|+.
T Consensus 76 ~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~---L-~~~v~~d~Pf~------~~eR~~Rl~~--L~~~l~~~ 143 (251)
T PF11932_consen 76 ERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE---L-EQFVELDLPFL------LEERQERLAR--LRAMLDDA 143 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHhcCCCCC------hHHHHHHHHH--HHHhhhcc
Confidence 33445555555555555555666666666665532221 1 12224556532 2222222222 22222222
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhh
Q 005087 685 SKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 685 ~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
. ....|+|..|=+||.+-.
T Consensus 144 d-------v~~~ek~r~vlea~~~E~ 162 (251)
T PF11932_consen 144 D-------VSLAEKFRRVLEAYQIEM 162 (251)
T ss_pred C-------CCHHHHHHHHHHHHHHHH
Confidence 1 124589999999998754
No 209
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.53 E-value=7.3e+02 Score=25.79 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=12.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhh
Q 005087 689 VRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 689 ~req~eAEEKFKeISeAYEVL~ 710 (715)
...++...++=|.|+.-...|.
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~ 195 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELK 195 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5567888888887776655554
No 210
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.48 E-value=1.1e+03 Score=27.36 Aligned_cols=7 Identities=14% Similarity=-0.012 Sum_probs=2.7
Q ss_pred hhhhhcc
Q 005087 514 KQQVIGS 520 (715)
Q Consensus 514 k~~~~~~ 520 (715)
++.|-++
T Consensus 172 ~~Ai~~L 178 (650)
T TIGR03185 172 KEAIEVL 178 (650)
T ss_pred HHHHHHH
Confidence 3343333
No 211
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=23.44 E-value=1.1e+03 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 561 YKRAMEEEWASRQRQLQIQAEEAQRLRKKKR 591 (715)
Q Consensus 561 yK~A~EeEWasRQ~ELq~QAEEAqRlRKrkK 591 (715)
+-..+-.+|...|.+...+|.++++.....=
T Consensus 155 ~Q~eQ~R~Wl~qQ~~E~~~a~~~ek~ae~~~ 185 (379)
T PF05914_consen 155 LQQEQMREWLEQQMEEKQQARAEEKEAEMLY 185 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667898888888888777766655433
No 212
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.29 E-value=2.8e+02 Score=32.48 Aligned_cols=62 Identities=29% Similarity=0.290 Sum_probs=27.4
Q ss_pred CccchhhhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q 005087 539 SLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAES-MRLLDMERRQK 605 (715)
Q Consensus 539 ~~~~~~~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~-~R~lemERRqK 605 (715)
+.+++.+--+-+.--.||--...-|++| ||-++++..-.--.+|.|.-.|+ +|+|.|||..+
T Consensus 496 da~SS~eTll~niq~llkva~dnar~qe-----kQiq~Ek~ELkmd~lrerelreslekql~~ErklR 558 (641)
T KOG3915|consen 496 DALSSIETLLTNIQGLLKVAIDNARAQE-----KQIQLEKTELKMDFLRERELRESLEKQLAMERKLR 558 (641)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666656555555554444433332 33333332222223333333332 35666666433
No 213
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=22.89 E-value=7e+02 Score=24.11 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.5
Q ss_pred hhhhHHhhhh
Q 005087 545 ADDIINEREK 554 (715)
Q Consensus 545 ~~~~i~~rEk 554 (715)
-..+|.+|..
T Consensus 41 i~~~l~~R~~ 50 (173)
T PRK13460 41 ILKALDERAS 50 (173)
T ss_pred HHHHHHHHHH
Confidence 3456666654
No 214
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=22.82 E-value=7.1e+02 Score=24.17 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 005087 543 AFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEEN- 621 (715)
Q Consensus 543 ~~~~~~i~~rEklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEee- 621 (715)
.+-.++|.+|...=..+.-.... .+++.+...++.++.-...++++..+++-.+..-++..+---.+.+.+.+
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~------~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~ 114 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQ------AKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hhhhHHHHHHHHHHHhhhhhhcccHH
Q 005087 622 --MNLKEKIRIEVRKELCKLETTCIDMA 647 (715)
Q Consensus 622 --a~~kE~~R~eiR~eLe~~e~~c~DMa 647 (715)
+.++..+..+-+..+..+...-.+++
T Consensus 115 ~~~~A~~~I~~ek~~a~~~l~~ei~~lA 142 (173)
T PRK13453 115 MIETAQSEINSQKERAIADINNQVSELS 142 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>PRK06991 ferredoxin; Provisional
Probab=22.80 E-value=3.8e+02 Score=28.48 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005087 569 WASRQRQLQIQAEEAQRLRKKKR 591 (715)
Q Consensus 569 WasRQ~ELq~QAEEAqRlRKrkK 591 (715)
|...+.+..+++-|++..|..+.
T Consensus 147 ~~~~~a~~ar~r~~~r~~Rl~~~ 169 (270)
T PRK06991 147 WSQAQADAARARHDARQARLRRE 169 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87666677777666665555433
No 216
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=22.60 E-value=1.4e+02 Score=34.24 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCC
Q 005087 195 VQDQASPSSLNNDP 208 (715)
Q Consensus 195 ~~d~asps~~~~d~ 208 (715)
+.+.++|-....|.
T Consensus 4 ~~~~pap~~~~~~~ 17 (506)
T KOG2441|consen 4 LSDLPAPKSTTTDY 17 (506)
T ss_pred cccCCCCCCCCchH
Confidence 34555555555544
No 217
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=22.58 E-value=7.6e+02 Score=24.42 Aligned_cols=11 Identities=0% Similarity=-0.127 Sum_probs=6.2
Q ss_pred hhhhHHhhhhc
Q 005087 545 ADDIINEREKL 555 (715)
Q Consensus 545 ~~~~i~~rEkl 555 (715)
--.+|.+|+..
T Consensus 29 I~~~LeeR~~~ 39 (154)
T PRK06568 29 ILNSLDAKILE 39 (154)
T ss_pred HHHHHHHHHHH
Confidence 34566666654
No 218
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.09 E-value=1.4e+03 Score=28.90 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 567 EEWASRQRQLQIQAEEAQRLRKKKRA 592 (715)
Q Consensus 567 eEWasRQ~ELq~QAEEAqRlRKrkKA 592 (715)
+.|...+.+++.+.+++.+.|+++..
T Consensus 659 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 684 (1201)
T PF12128_consen 659 QRLKNEREQLKQEIEEAKEERKEQIE 684 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666655554443
No 219
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.74 E-value=1.2e+02 Score=33.37 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005087 565 MEEEWASRQRQLQIQAEEA 583 (715)
Q Consensus 565 ~EeEWasRQ~ELq~QAEEA 583 (715)
.++|..+||+||+|.++|-
T Consensus 65 kq~eL~~rqeEL~Rke~EL 83 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQEL 83 (313)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777788877765553
No 220
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.58 E-value=6.3e+02 Score=24.12 Aligned_cols=57 Identities=26% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005087 574 RQLQIQAEEAQRLRKKKRAESMR-LLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRK 634 (715)
Q Consensus 574 ~ELq~QAEEAqRlRKrkKAe~~R-~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~ 634 (715)
..+..+|+++-++|- ||=.+| +|..+ +++|-.+..+.+..-.+-.--+|++|.+.+.
T Consensus 48 ~~~~~~A~~VE~eKl--kAIG~RN~l~s~--~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~s 105 (120)
T PF14931_consen 48 EILDELAKRVENEKL--KAIGARNLLKSE--AKQREAQQQQLQALIAEKKMELERLRSEYES 105 (120)
T ss_pred HHHHHHHHHHHHHHH--HHHHhHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655 344456 44444 4666666666666666666667777777654
No 221
>COG4420 Predicted membrane protein [Function unknown]
Probab=21.24 E-value=4.3e+02 Score=27.46 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005087 571 SRQRQLQIQAEEAQRLRKKK-RAESMRL----LDMERR---QKQRLEEIRETQKKDEENMNLKEKIRIEVRKE 635 (715)
Q Consensus 571 sRQ~ELq~QAEEAqRlRKrk-KAe~~R~----lemERR---qKQRlEe~RE~qkKrEeea~~kE~~R~eiR~e 635 (715)
.||++.-+++.+...++--+ +++.+.+ .++..+ ...+++..|+..+..+......+..|...|..
T Consensus 112 NRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~~~~a~r~~ 184 (191)
T COG4420 112 NRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEALRRAVRGG 184 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHHHHHHHhcC
Confidence 47887777777666554322 2233332 233333 45678888888888777777666666665543
No 222
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=21.06 E-value=1.2e+03 Score=26.29 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=3.8
Q ss_pred HHHHHhhhHH
Q 005087 589 KKRAESMRLL 598 (715)
Q Consensus 589 rkKAe~~R~l 598 (715)
+++.+++|++
T Consensus 278 ~A~gea~~ii 287 (419)
T PRK10930 278 RANGQAQRIL 287 (419)
T ss_pred HHHHHHHHHH
Confidence 3333334433
No 223
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=21.01 E-value=8.1e+02 Score=30.75 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhccccc
Q 005087 175 KEWEKAYLKRKFHVHQ 190 (715)
Q Consensus 175 eqWEka~lkrK~~~~~ 190 (715)
--|-|-|-.-|.|.++
T Consensus 296 aAw~k~f~l~k~~~K~ 311 (988)
T KOG2072|consen 296 AAWLKLFKLYKNMNKN 311 (988)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3455555555444443
No 224
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=20.90 E-value=5.7e+02 Score=22.56 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005087 558 TDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKK 590 (715)
Q Consensus 558 tdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrk 590 (715)
+|.|.+++ |..||.+...+.+..|...
T Consensus 7 ~da~RK~~------kkKElkKnK~~R~~~R~~~ 33 (78)
T PF09429_consen 7 TDAYRKEQ------KKKELKKNKKERQKVREAK 33 (78)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 67788877 8888888877766666543
No 225
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=20.87 E-value=6.2e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhC
Q 005087 608 LEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALG 654 (715)
Q Consensus 608 lEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLG 654 (715)
|++-|++..+..++...+.....+++..+ ....+++.+|+..++
T Consensus 37 v~er~~~~~~~~~~~~er~~~l~~i~~~~---~~~Git~eeL~~~~~ 80 (134)
T PRK10328 37 TKERREEEEQQQRELAERQEKINTWLELM---KADGINPEELLGNSS 80 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHhhhhc
Confidence 34444443333333333444444444443 356677888865444
No 226
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=20.66 E-value=5.3e+02 Score=28.87 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005087 565 MEEEWASRQRQLQIQAE 581 (715)
Q Consensus 565 ~EeEWasRQ~ELq~QAE 581 (715)
...|| .|..+|+.|++
T Consensus 145 ~KaE~-~R~K~L~dQ~e 160 (357)
T PTZ00436 145 VKNEK-KKERQLAEQLA 160 (357)
T ss_pred HHHHH-HHHHHHHHHHH
Confidence 33444 46666666643
No 227
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=20.29 E-value=8.8e+02 Score=30.44 Aligned_cols=6 Identities=50% Similarity=1.359 Sum_probs=2.4
Q ss_pred HHHHHH
Q 005087 176 EWEKAY 181 (715)
Q Consensus 176 qWEka~ 181 (715)
=|..||
T Consensus 247 LWQEAy 252 (988)
T KOG2072|consen 247 LWQEAY 252 (988)
T ss_pred HHHHHH
Confidence 344443
No 228
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=20.24 E-value=3.2e+02 Score=31.53 Aligned_cols=7 Identities=43% Similarity=0.520 Sum_probs=4.6
Q ss_pred HHhCcCC
Q 005087 651 RALGIHV 657 (715)
Q Consensus 651 ~vLGV~~ 657 (715)
-+||++.
T Consensus 389 IaLG~~~ 395 (506)
T KOG2441|consen 389 IALGLAK 395 (506)
T ss_pred hhhccCC
Confidence 4688873
No 229
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=20.10 E-value=88 Score=23.60 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.1
Q ss_pred eEEEecCCCCccceEEE
Q 005087 36 VVLIDVDSERLDNVILI 52 (715)
Q Consensus 36 vv~IDvDsd~~~nVIii 52 (715)
+.+-|+|+|.+.|+||-
T Consensus 5 ~~~gD~ngDG~~Dl~vg 21 (34)
T PF01839_consen 5 VAVGDFNGDGYDDLAVG 21 (34)
T ss_dssp EEEESTSSSSS-EEEEE
T ss_pred cEEEEcCCCCCccEEEE
Confidence 56779999999999987
No 230
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=20.03 E-value=7.7e+02 Score=27.49 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005087 568 EWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQK 605 (715)
Q Consensus 568 EWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqK 605 (715)
++..|..+|+..-++.++.-.++-++--+.+..|++.+
T Consensus 191 ~~d~~a~eL~~~ee~~Rra~~~a~~~fN~~~A~E~~er 228 (379)
T PF05914_consen 191 EQDRRALELQKLEEECRRAICRATKEFNKAQAAEKAER 228 (379)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444443333333333444444333
Done!