Query 005087
Match_columns 715
No_of_seqs 137 out of 273
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 14:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iur_A KIAA0730 protein; DNAJ 99.6 6.8E-16 2.3E-20 131.3 6.8 60 644-711 13-72 (88)
2 2qwo_B Putative tyrosine-prote 99.6 3.4E-16 1.1E-20 135.3 1.9 58 648-711 34-91 (92)
3 2ys8_A RAB-related GTP-binding 99.6 2.9E-15 1E-19 126.1 7.0 55 647-711 27-81 (90)
4 2ej7_A HCG3 gene; HCG3 protein 99.6 2.5E-15 8.4E-20 122.9 5.5 60 645-712 7-66 (82)
5 1wjz_A 1700030A21RIK protein; 99.6 1.8E-15 6E-20 126.2 4.3 65 644-712 13-78 (94)
6 2dmx_A DNAJ homolog subfamily 99.5 3.6E-15 1.2E-19 124.8 5.7 60 645-712 7-66 (92)
7 2yua_A Williams-beuren syndrom 99.5 9E-15 3.1E-19 124.5 7.7 57 646-711 16-72 (99)
8 2dn9_A DNAJ homolog subfamily 99.5 6.9E-15 2.4E-19 119.5 6.5 56 648-712 8-63 (79)
9 2lgw_A DNAJ homolog subfamily 99.5 5.7E-15 2E-19 126.9 6.2 59 646-712 1-59 (99)
10 3ag7_A Putative uncharacterize 99.5 9.3E-16 3.2E-20 134.2 0.6 62 647-713 41-104 (106)
11 1hdj_A Human HSP40, HDJ-1; mol 99.5 1.3E-14 4.3E-19 117.7 6.0 55 648-712 4-58 (77)
12 2ctr_A DNAJ homolog subfamily 99.5 1.6E-14 5.5E-19 120.5 6.8 56 647-712 7-62 (88)
13 2ctq_A DNAJ homolog subfamily 99.5 1E-14 3.4E-19 126.9 5.4 58 645-711 18-75 (112)
14 2cug_A Mkiaa0962 protein; DNAJ 99.5 2.1E-14 7.2E-19 119.8 6.8 54 648-711 18-71 (88)
15 2ctp_A DNAJ homolog subfamily 99.5 2E-14 6.7E-19 116.9 6.5 56 647-712 7-62 (78)
16 2ctw_A DNAJ homolog subfamily 99.5 2.5E-14 8.4E-19 124.2 6.7 56 647-711 17-72 (109)
17 2l6l_A DNAJ homolog subfamily 99.5 3E-14 1E-18 129.0 6.6 65 643-711 6-71 (155)
18 1faf_A Large T antigen; J doma 99.5 3.7E-14 1.3E-18 117.6 5.9 56 645-711 9-64 (79)
19 3apq_A DNAJ homolog subfamily 99.5 2E-14 6.8E-19 130.9 4.6 57 646-711 1-57 (210)
20 2qsa_A DNAJ homolog DNJ-2; J-d 99.5 2.7E-14 9.4E-19 122.9 5.2 61 646-712 14-75 (109)
21 2och_A Hypothetical protein DN 99.5 4.4E-14 1.5E-18 113.8 6.0 53 648-712 9-61 (73)
22 1n4c_A Auxilin; four helix bun 99.5 1.1E-14 3.7E-19 139.0 2.2 60 647-712 117-176 (182)
23 2guz_A Mitochondrial import in 99.5 8.2E-14 2.8E-18 113.1 6.5 57 644-712 11-67 (71)
24 2o37_A Protein SIS1; HSP40, J- 99.4 9.4E-14 3.2E-18 116.9 6.7 53 647-711 8-60 (92)
25 1bq0_A DNAJ, HSP40; chaperone, 99.4 2E-14 7E-19 122.9 1.0 56 648-712 4-59 (103)
26 1fpo_A HSC20, chaperone protei 99.4 1.6E-13 5.5E-18 127.9 6.5 63 648-712 2-64 (171)
27 3bvo_A CO-chaperone protein HS 99.4 1.6E-13 5.4E-18 131.9 6.0 63 647-711 43-105 (207)
28 1gh6_A Large T antigen; tumor 99.4 1.1E-13 3.9E-18 122.6 3.3 53 646-711 7-61 (114)
29 3hho_A CO-chaperone protein HS 99.4 2.9E-13 9.8E-18 126.4 5.9 64 647-712 4-67 (174)
30 3lz8_A Putative chaperone DNAJ 99.3 1E-13 3.6E-18 140.6 0.0 61 642-712 23-83 (329)
31 2pf4_E Small T antigen; PP2A, 99.2 5E-12 1.7E-16 120.0 3.0 54 646-712 10-65 (174)
32 3uo3_A J-type CO-chaperone JAC 99.1 7.1E-12 2.4E-16 118.3 -0.2 59 643-712 7-71 (181)
33 3apo_A DNAJ homolog subfamily 99.1 1.8E-11 6.1E-16 131.0 0.7 57 647-712 21-77 (780)
34 2y4t_A DNAJ homolog subfamily 98.5 4.4E-08 1.5E-12 92.3 4.7 59 648-712 383-441 (450)
35 2guz_B Mitochondrial import in 98.4 3.7E-07 1.3E-11 74.9 5.9 55 646-710 3-57 (65)
36 2pzi_A Probable serine/threoni 91.1 0.18 6.1E-06 53.8 4.9 63 625-709 609-676 (681)
37 3tnu_A Keratin, type I cytoske 76.2 19 0.00063 32.3 10.0 40 595-637 66-105 (131)
38 2zuo_A MVP, major vault protei 74.7 12 0.00042 43.4 10.4 68 571-642 678-747 (861)
39 3cvf_A Homer-3, homer protein 73.3 24 0.00082 30.4 9.4 51 567-617 23-73 (79)
40 3tnu_B Keratin, type II cytosk 71.7 31 0.0011 30.7 10.3 49 585-636 54-102 (129)
41 1gk4_A Vimentin; intermediate 70.3 23 0.00078 29.8 8.6 62 596-676 16-77 (84)
42 1x8y_A Lamin A/C; structural p 60.5 15 0.0005 31.3 5.6 62 596-676 18-79 (86)
43 3viq_A SWI5-dependent recombin 58.9 45 0.0015 30.4 8.8 40 619-658 39-109 (122)
44 3oja_B Anopheles plasmodium-re 53.7 1.3E+02 0.0045 31.4 12.5 12 110-121 123-134 (597)
45 3cve_A Homer protein homolog 1 53.0 68 0.0023 27.3 8.3 34 568-601 18-51 (72)
46 3gty_X Trigger factor, TF; cha 51.4 88 0.003 32.9 10.8 49 625-679 319-367 (433)
47 3oja_B Anopheles plasmodium-re 42.0 1.8E+02 0.0062 30.3 11.3 8 114-121 103-110 (597)
48 4efa_E V-type proton ATPase su 38.4 2.7E+02 0.0091 26.5 12.6 15 666-680 154-168 (233)
49 1ij5_A Plasmodial specific LAV 38.3 3E+02 0.01 27.1 13.0 20 657-676 133-152 (323)
50 2b5u_A Colicin E3; high resolu 37.4 1.6E+02 0.0054 32.9 10.3 20 558-577 293-312 (551)
51 3mov_A Lamin-B1; LMNB1, B-type 37.0 73 0.0025 27.8 6.3 37 596-635 27-63 (95)
52 2nsa_A Trigger factor, TF; cha 36.5 1.1E+02 0.0038 27.2 7.7 29 646-680 98-126 (170)
53 1ij5_A Plasmodial specific LAV 33.5 1E+02 0.0035 30.4 7.5 27 642-674 137-166 (323)
54 3v6i_B V-type ATP synthase, su 33.1 2.8E+02 0.0096 25.2 11.0 45 570-614 12-61 (105)
55 3oja_A Leucine-rich immune mol 32.2 4.3E+02 0.015 27.1 12.5 36 600-635 412-447 (487)
56 1t11_A Trigger factor, TF; hel 28.9 1.7E+02 0.0058 30.3 8.6 46 625-680 337-382 (392)
57 1f5n_A Interferon-induced guan 28.4 3.4E+02 0.012 29.9 11.3 8 35-42 10-17 (592)
58 3d5k_A OPRM, outer membrane pr 26.8 4.8E+02 0.017 25.9 13.2 33 646-681 439-471 (474)
59 2dfs_A Myosin-5A; myosin-V, in 25.3 5.4E+02 0.018 30.4 12.7 110 553-672 970-1079(1080)
60 3nr7_A DNA-binding protein H-N 25.2 3.1E+02 0.011 23.7 8.2 12 641-652 70-81 (86)
61 2b5u_A Colicin E3; high resolu 22.9 7.3E+02 0.025 27.9 12.3 27 512-542 266-292 (551)
62 1a6q_A Phosphatase 2C; catalyt 21.4 1.2E+02 0.0042 30.9 5.8 29 654-686 344-372 (382)
63 2i1j_A Moesin; FERM, coiled-co 21.4 43 0.0015 36.6 2.6 21 690-710 504-524 (575)
64 3oja_A Leucine-rich immune mol 20.9 4.9E+02 0.017 26.6 10.2 14 558-571 364-377 (487)
No 1
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.61 E-value=6.8e-16 Score=131.29 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=53.6
Q ss_pred ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
..+.++|.+|||+.+ |+.++||+|||+|||+|||||++++ ...|+++|++|++||+||+.
T Consensus 13 ~~~~~~y~vLgv~~~----as~~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 13 SILKEVTSVVEQAWK----LPESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp SCHHHHHHHHHHTTS----SCSHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHh
Confidence 346789999999966 9999999999999999999999864 25799999999999999985
No 2
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.57 E-value=3.4e-16 Score=135.30 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=51.1
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+.|.+|||... ||+++||+|||||||+|||||++++.. ...|+++|++|++|||||..
T Consensus 34 ~~y~~Lgv~~~----as~~eIKkAYRklal~~HPDK~~~~~~--~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 34 TKWKPVGMADL----VTPEQVKKVYRKAVLVVHPCKATGQPY--EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CSCCCCCGGGS----SSHHHHHHHHHHHHHHTCHHHHTTSTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeecCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCchh--HhHHHHHHHHHHHHHHHHHh
Confidence 57999999976 999999999999999999999987532 24699999999999999963
No 3
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=126.10 Aligned_cols=55 Identities=27% Similarity=0.498 Sum_probs=50.0
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. |+.++||+|||+||++|||||++.. .|+++|++|++||++|+-
T Consensus 27 ~~~y~iLgv~~~----as~~eIk~aYr~la~~~HPDk~~~~------~~~~~f~~i~~Ay~~L~d 81 (90)
T 2ys8_A 27 KDSWDMLGVKPG----ASRDEVNKAYRKLAVLLHPDKCVAP------GSEDAFKAVVNARTALLK 81 (90)
T ss_dssp SSHHHHHTCCTT----CCHHHHHHHHHHHHHHHCTTTCCCT------THHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcCcCCC----CCHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCC
Confidence 369999999965 9999999999999999999999863 488999999999999974
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=122.89 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=53.5
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.|.++|++|||++. |+.++||+|||+|+++||||+++.. ...|+++|++|++||++|+..
T Consensus 7 ~~~~~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~ 66 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQ----ASSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDA 66 (82)
T ss_dssp SSCCHHHHTTCCTT----CCHHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSST
T ss_pred CCcCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCH
Confidence 46689999999976 9999999999999999999999864 357999999999999999854
No 5
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.55 E-value=1.8e-15 Score=126.22 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=55.3
Q ss_pred ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-cccchHHHHHHHHHHHHHHHHhhhc
Q 005087 644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKT-DVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~d-d~req~eAEEKFKeISeAYEVL~~~ 712 (715)
+++.++|++|||++. |+.++||+|||+|+++||||+++.. ....+..|+++|++|++||+||+-.
T Consensus 13 ~~~~~~y~iLgv~~~----as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~ 78 (94)
T 1wjz_A 13 TLKKDWYSILGADPS----ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78 (94)
T ss_dssp SSCSCHHHHTTCCTT----CCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCChHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence 445689999999965 9999999999999999999999852 2234568999999999999999753
No 6
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.6e-15 Score=124.76 Aligned_cols=60 Identities=33% Similarity=0.599 Sum_probs=53.4
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.|.++|++|||++. |+.++||+|||+|+++||||+++.. ...|+++|++|++||+||+..
T Consensus 7 ~~~~~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 7 GMANYYEVLGVQAS----ASPEDIKKAYRKLALRWHPDKNPDN----KEEAEKKFKLVSEAYEVLSDS 66 (92)
T ss_dssp CCCCHHHHHTCCTT----CCTTHHHHHHHHHHHHTCTTTCSSC----SHHHHHHHHHHHHHHHHHHSH
T ss_pred CCcCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCCCCCCcc----HHHHHHHHHHHHHHHHHHCCH
Confidence 46689999999975 8999999999999999999999864 257999999999999999753
No 7
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9e-15 Score=124.52 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=51.5
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
..++|++|||++. |+.++||+|||+|+++||||+++... +|+++|++|++||+||+-
T Consensus 16 ~~~~Y~vLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d 72 (99)
T 2yua_A 16 RTALYDLLGVPST----ATQAQIKAAYYRQCFLYHPDRNSGSA-----EAAERFTRISQAYVVLGS 72 (99)
T ss_dssp SSHHHHHHTCCTT----CCHHHHHHHHHHHHHHSCTTTCSSCS-----HHHHHHHHHHHHHHHTTS
T ss_pred ccCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCCH-----HHHHHHHHHHHHHHHHCC
Confidence 4589999999965 99999999999999999999998642 689999999999999975
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.9e-15 Score=119.51 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=50.6
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. |+.++||+|||+|+++||||+++... .|+++|++|++||++|+..
T Consensus 8 ~~y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~ 63 (79)
T 2dn9_A 8 DYYQILGVPRN----ASQKEIKKAYYQLAKKYHPDTNKDDP-----KAKEKFSQLAEAYEVLSDE 63 (79)
T ss_dssp CHHHHHTCCTT----CCHHHHHHHHHHHHHHTCTTTCSSCT-----THHHHHHHHHHHHHHHHSH
T ss_pred CHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCCH-----HHHHHHHHHHHHHHHHCCH
Confidence 68999999975 99999999999999999999998642 5899999999999999753
No 9
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=126.91 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=52.8
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
|.++|++|||++. |+.++||+|||+|+++|||||++.. +..|+++|++|++||+||+..
T Consensus 1 M~d~Y~iLgv~~~----as~~eIk~aYr~la~~~HPDk~~~~----~~~a~~~f~~I~~AY~vL~d~ 59 (99)
T 2lgw_A 1 MASYYEILDVPRS----ASADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDK 59 (99)
T ss_dssp CCCHHHHSSSCTT----SCHHHHHHHHHHHHHHTSTTTCCSC----CHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCcc----HHHHHHHHHHHHHHHHHHCCH
Confidence 5689999999976 9999999999999999999999864 357999999999999999753
No 10
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.53 E-value=9.3e-16 Score=134.24 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=53.0
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccccchHHHHHHHHHHHHHHHHhhhcc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASK--TDVRQQVEAEEKFKLISRMREKFLLTA 713 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~--dd~req~eAEEKFKeISeAYEVL~~~s 713 (715)
.++|.+||++. ||.++||+|||||||+|||||++. .+..++..|+++|+.|++||+||+-..
T Consensus 41 ~d~Y~vl~~~~-----As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-----IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-----CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-----CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 47899999882 899999999999999999999874 234455679999999999999998643
No 11
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.51 E-value=1.3e-14 Score=117.74 Aligned_cols=55 Identities=35% Similarity=0.597 Sum_probs=49.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. |+.++||+|||+|+++||||+++.. .|+++|+.|++||++|+..
T Consensus 4 ~~y~iLgv~~~----as~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 4 DYYQTLGLARG----ASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp CSHHHHTCCTT----CCHHHHHHHHHHHHHTTCTTTCCCT------THHHHHHHHHHHHHHTTCH
T ss_pred CHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCCH
Confidence 58999999975 9999999999999999999999853 4889999999999999753
No 12
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=120.47 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=50.8
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||++. |+.++||+|||+|+++||||+++. ..|+++|++|++||++|+..
T Consensus 7 ~~~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~~L~d~ 62 (88)
T 2ctr_A 7 GSYYDILGVPKS----ASERQIKKAFHKLAMKYHPDKNKS------PDAEAKFREIAEAYETLSDA 62 (88)
T ss_dssp CSHHHHHTCCTT----CCHHHHHHHHHHHHHHTCTTTCCS------HHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHcCcCCC----CCHHHHHHHHHHHHHHHCcCCCCC------hHHHHHHHHHHHHHHHHCCH
Confidence 469999999975 999999999999999999999984 36999999999999999753
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=126.86 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=52.1
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++.++|++|||++. |+.++||+|||+|+++|||||++... +|+++|++|++||+||+-
T Consensus 18 ~~~d~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d 75 (112)
T 2ctq_A 18 DTEDYYTLLGCDEL----SSVEQILAEFKVRALECHPDKHPENP-----KAVETFQKLQKAKEILTN 75 (112)
T ss_dssp CCCCHHHHTTCCTT----SCHHHHHHHHHHHHHTTCTTTCTTCS-----THHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHCC
Confidence 35689999999965 99999999999999999999998643 599999999999999974
No 14
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=2.1e-14 Score=119.76 Aligned_cols=54 Identities=28% Similarity=0.453 Sum_probs=49.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
++|++|||++. |+.++||+|||+|+++||||+++.. .|+++|++|++||++|+.
T Consensus 18 d~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~------~~~~~f~~i~~Ay~~L~d 71 (88)
T 2cug_A 18 DPYRVLGVSRT----ASQADIKKAYKKLAREWHPDKNKDP------GAEDRFIQISKAYEILSN 71 (88)
T ss_dssp CHHHHHTCCTT----CCHHHHHHHHHHHHHHSCTTTCCST------THHHHHHHHHHHHHHHHS
T ss_pred CHHHHcCcCCC----CCHHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHHCC
Confidence 69999999975 9999999999999999999999863 488999999999999975
No 15
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=116.86 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=50.5
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||++. |+.++||+|||+|+++||||++.. +.|+++|++|++||+||+..
T Consensus 7 ~~~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~ 62 (78)
T 2ctp_A 7 GDYYEILGVSRG----ASDEDLKKAYRRLALKFHPDKNHA------PGATEAFKAIGTAYAVLSNP 62 (78)
T ss_dssp CCHHHHHTCCTT----CCHHHHHHHHHHHHTTSCTTTCSS------HHHHHHHHHHHHHHHHHTSH
T ss_pred CCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHHCCH
Confidence 469999999976 999999999999999999999975 36899999999999999753
No 16
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2.5e-14 Score=124.15 Aligned_cols=56 Identities=29% Similarity=0.539 Sum_probs=50.9
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. |+.++||+|||+|+++||||+++.. ++|+++|++|++||+||+-
T Consensus 17 ~~~Y~vLgv~~~----as~~eIk~aYr~la~~~HPDk~~~~-----~~a~~~f~~i~~Ay~vL~d 72 (109)
T 2ctw_A 17 ESLYHVLGLDKN----ATSDDIKKSYRKLALKYHPDKNPDN-----PEAADKFKEINNAHAILTD 72 (109)
T ss_dssp CCHHHHHTCCTT----CCHHHHHHHHHHHHHHSCTTTSTTC-----HHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHcCcCCC----CCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHcC
Confidence 369999999975 9999999999999999999999864 3699999999999999974
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=128.99 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=56.8
Q ss_pred cccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-ccchHHHHHHHHHHHHHHHHhhh
Q 005087 643 CIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTD-VRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 643 c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd-~req~eAEEKFKeISeAYEVL~~ 711 (715)
...+.++|++|||++. |+.++||+|||+|+++|||||++... ..++..|+++|++|++||+||+.
T Consensus 6 ~~~~~~~y~iLgv~~~----a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~d 71 (155)
T 2l6l_A 6 QMPKKDWYSILGADPS----ANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71 (155)
T ss_dssp CCCCSHHHHHHTCCTT----CCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCChhHhcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence 3456799999999976 89999999999999999999998753 24567799999999999999974
No 18
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.47 E-value=3.7e-14 Score=117.61 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=48.7
Q ss_pred cHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 645 DMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 645 DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
+...+|++|||++. ..|+..+||+|||+||++||||++.. +++|++|++||++|+.
T Consensus 9 ~~~~~y~iLgl~~~--~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 9 DKERLLELLKLPRQ--LWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHHHHHHTCCSS--STTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhh
Confidence 45689999999965 23899999999999999999999752 4799999999999975
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.47 E-value=2e-14 Score=130.90 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=51.3
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
|.++|++|||++. |+.++||+|||+||++|||||+++.. +|+++|++|++||++|+.
T Consensus 1 ~~~~y~~l~~~~~----a~~~~ik~ay~~l~~~~HPD~~~~~~-----~~~~~f~~i~~Ay~~L~~ 57 (210)
T 3apq_A 1 IQNFYSLLGVSKT----ASSREIRQAFKKLALKLHPDKNPNNP-----NAHGDFLKINRAYEVLKD 57 (210)
T ss_dssp CCCHHHHHTCCTT----CCHHHHHHHHHHHHHHHCGGGCTTCT-----THHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHhCC
Confidence 3479999999976 99999999999999999999998643 599999999999999974
No 20
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.47 E-value=2.7e-14 Score=122.88 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=53.6
Q ss_pred HHHHHHHhCcCCCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRP-LSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tA-T~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
..++|++|||+++ | +.++||+|||+||++|||||+++ ...++.|+++|++|++||+||+-.
T Consensus 14 ~~~~y~iLgv~~~----a~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~ 75 (109)
T 2qsa_A 14 LENCYDVLEVNRE----EFDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDD 75 (109)
T ss_dssp TSCHHHHTTCCGG----GCCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCCCCC----CCCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCH
Confidence 4579999999976 8 99999999999999999999986 234568999999999999999753
No 21
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.47 E-value=4.4e-14 Score=113.77 Aligned_cols=53 Identities=30% Similarity=0.528 Sum_probs=47.8
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||+++ |+.++||+|||+|+++||||++++ ++++|++|++||+||+..
T Consensus 9 ~~y~iLgl~~~----a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 9 GYYDVLGVKPD----ASDNELKKAYRKMALKFHPDKNPD--------GAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp CHHHHHTCCTT----CCHHHHHHHHHHHHHHTCTTTCTT--------CHHHHHHHHHHHHHHTSH
T ss_pred CHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCcC--------HHHHHHHHHHHHHHHCCH
Confidence 68999999975 999999999999999999999975 247999999999999753
No 22
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.46 E-value=1.1e-14 Score=138.99 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=52.4
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|.+|||+.. |+.++||+|||+|||+|||||+++... ...|+++|++|++||+||+-.
T Consensus 117 ~d~Y~vLgv~~~----As~~eIKkAYRklal~~HPDK~~~~~~--e~~A~~~F~~I~eAYevLsD~ 176 (182)
T 1n4c_A 117 ETKWKPVGMADL----VTPEQVKKVYRKAVLVVHPDKATGQPY--EQYAKMIFMELNDAWSEFENQ 176 (182)
T ss_dssp CCCCCCCCGGGG----SSHHHHHHHHHHHHHHTCGGGGSSCTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCCC----CCHHHHHHHHHHHHHHHCcCcCCCcch--HHHHHHHHHHHHHHHHHHCCH
Confidence 379999999966 999999999999999999999986542 235999999999999999753
No 23
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.45 E-value=8.2e-14 Score=113.08 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=49.0
Q ss_pred ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
+.+.++|.+|||++. +|+.++||+|||+||++||||++. ..++|++|++||++|+..
T Consensus 11 m~~~~~y~iLgl~~~---~a~~~eIk~ayr~l~~~~HPDk~g---------~~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 11 MNSKEALQILNLTEN---TLTKKKLKEVHRKIMLANHPDKGG---------SPFLATKINEAKDFLEKR 67 (71)
T ss_dssp CCHHHHHHHTTCCTT---TCCHHHHHHHHHHHHHHHCGGGTC---------CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCC---CCCHHHHHHHHHHHHHHHCCCCCC---------CHHHHHHHHHHHHHHhhh
Confidence 456799999999962 399999999999999999999953 235999999999999754
No 24
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.44 E-value=9.4e-14 Score=116.91 Aligned_cols=53 Identities=34% Similarity=0.521 Sum_probs=48.0
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|++|||++. |+.++||+|||+|+++||||+++.. +++|++|++||+||+.
T Consensus 8 ~~~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d 60 (92)
T 2o37_A 8 TKLYDLLGVSPS----ANEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILND 60 (92)
T ss_dssp CHHHHHHTCCTT----CCHHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTS
T ss_pred CCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCC
Confidence 479999999976 9999999999999999999999753 3699999999999975
No 25
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.42 E-value=2e-14 Score=122.87 Aligned_cols=56 Identities=34% Similarity=0.523 Sum_probs=50.3
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|++|||++. |+.++||+|||+|+++||||+++... +|+++|++|++||+||+..
T Consensus 4 ~~y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~ 59 (103)
T 1bq0_A 4 DYYEILGVSKT----AEEREIRKAYKRLAMKYHPDRNQGDK-----EAEAKFKEIKEAYEVLTDS 59 (103)
T ss_dssp CSTTTTSSCSS----CCHHHHHHHHHHHHTTTCTTTCTTTC-----THHHHHHHHTTTTTSTTCS
T ss_pred CHHHHcCcCCC----CCHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHCCH
Confidence 58999999976 99999999999999999999998642 5899999999999999753
No 26
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.41 E-value=1.6e-13 Score=127.93 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=55.2
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
++|.+|||++. ...+..+||+|||+|+++|||||+++....++..|.++|+.|++||+||+-+
T Consensus 2 d~y~lLgl~~~--a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 64 (171)
T 1fpo_A 2 DYFTLFGLPAR--YQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHP 64 (171)
T ss_dssp HHHHHTTCCSS--SCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHCCCCCC--CCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 68999999976 2239999999999999999999999876556778999999999999999853
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=131.87 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
.++|.+|||++. .+++.++||+|||+|+++|||||+++....++..|+++|++|++||+||+-
T Consensus 43 ~d~y~lLgv~~~--~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsd 105 (207)
T 3bvo_A 43 RDYFSLMDCNRS--FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105 (207)
T ss_dssp CCHHHHTTSCSC--SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 369999999976 458999999999999999999999976555667799999999999999984
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.38 E-value=1.1e-13 Score=122.58 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=47.2
Q ss_pred HHHHHHHhCcCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087 646 MASLLRALGIHVGGSFRPLS--QEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL 711 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~--aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~ 711 (715)
..++|++|||++. |+. ++||+|||+||++|||||++. +++|++|++||+||+-
T Consensus 7 ~~~~Y~iLgv~~~----as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d 61 (114)
T 1gh6_A 7 SLQLMDLLGLERS----AWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMED 61 (114)
T ss_dssp HHHHHHHTTCCTT----SCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCCC----CCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCC
Confidence 4589999999976 667 999999999999999999874 3699999999999975
No 29
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.38 E-value=2.9e-13 Score=126.36 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=55.4
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|.+|||++. .+.+..+||+|||+++++|||||+++....++..|+++|+.|++||+||+-.
T Consensus 4 ~d~Y~iLgl~~~--a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 67 (174)
T 3hho_A 4 MNYFELFGLPIQ--FELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDP 67 (174)
T ss_dssp CCHHHHTTCCSS--SCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCHHHHcCcCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 369999999986 2345999999999999999999999876656677999999999999999853
No 30
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.33 E-value=1e-13 Score=140.58 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred hcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 642 TCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 642 ~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
..+.+.++|++|||++. |+.++||+|||+||++||||+++.. .|+++|++|++||+||+-.
T Consensus 23 ~~m~~~d~Y~vLgv~~~----as~~eIk~aYr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vL~d~ 83 (329)
T 3lz8_A 23 NAMELKDYYAILGVQPT----DDLKTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDE 83 (329)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccCHHHHcCcCCC----CCHHHHHHHHHHHHHHHCCCCCCCh------HHHHHHHHHHHHHHHhhhh
Confidence 34456799999999965 9999999999999999999999753 5999999999999999854
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.19 E-value=5e-12 Score=119.96 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=44.8
Q ss_pred HHHHHHHhCcCCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 646 MASLLRALGIHVGGSFRPL--SQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT--~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
..++|++|||+++ |+ .++||+|||++|++|||||+++ +++|++|++||+||+-.
T Consensus 10 ~~d~Y~vLGl~~~----as~~~~eIKkAYRkLa~~~HPDk~~~---------~e~F~~I~~AYevLsdp 65 (174)
T 2pf4_E 10 SLQLMDLLGLERS----AWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDG 65 (174)
T ss_dssp HHHHHHTTTCCGG----GTTCHHHHHHHHHHHGGGCSCC---C---------CTTTTHHHHHHHHHHHH
T ss_pred cccHHHHcCCCCC----CCcCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHhCCH
Confidence 4589999999976 55 6999999999999999999864 26899999999999753
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.10 E-value=7.1e-12 Score=118.32 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=50.2
Q ss_pred cccHHHHHHHhC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 643 CIDMASLLRALG------IHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 643 c~DMaslY~vLG------V~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
...|.++|.+|| +++ .+|+.++||+|||+|+++|||||+++ |+++|+.|++||+||+-.
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~---~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp 71 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPI---WTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDP 71 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCC---SCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSH
T ss_pred CCCCCCHHHHhccccccCCCC---CCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcCh
Confidence 345778999995 443 36999999999999999999999975 567999999999999753
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.06 E-value=1.8e-11 Score=131.00 Aligned_cols=57 Identities=26% Similarity=0.424 Sum_probs=29.7
Q ss_pred HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.++|++|||++. |+.++||+|||+||++|||||+++. +.|+++|++|++||++|+-.
T Consensus 21 ~~~y~~lg~~~~----a~~~~i~~ay~~l~~~~hpd~~~~~-----~~~~~~f~~i~~ay~~L~~~ 77 (780)
T 3apo_A 21 QNFYSLLGVSKT----ASSREIRQAFKKLALKLHPDKNPNN-----PNAHGDFLKINRAYEVLKDE 77 (780)
T ss_dssp --CHHHHTCCTT----CCHHHHHHHHCC----------------------------CTHHHHHHSH
T ss_pred CCHHHHcCCCCC----CCHHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHHcCh
Confidence 479999999975 9999999999999999999999754 36899999999999999753
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.54 E-value=4.4e-08 Score=92.29 Aligned_cols=59 Identities=27% Similarity=0.457 Sum_probs=50.9
Q ss_pred HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087 648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT 712 (715)
Q Consensus 648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~ 712 (715)
.+|.+||+... ++..+|+++|+++++++|||+.+.+. ++..|+++|+.|++||++|+-.
T Consensus 383 ~~y~~lg~~~~----~~~~~~~~~y~~~~l~~~pd~~~~~~--~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 383 DYYKILGVKRN----AKKQEIIKAYRKLALQWHPDNFQNEE--EKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CSGGGSCSSTT----CCTTHHHHHHHHHHHHSCGGGCCSHH--HHHHHHHHHHHHHHHHHHSSGG
T ss_pred hHHHHhCCCcc----CCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHHHhCCH
Confidence 57889999866 67899999999999999999998643 2567999999999999999753
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.7e-07 Score=74.85 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=44.9
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhh
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~ 710 (715)
....|.+|||.+... .++.++|++|||+|...+||||.... -.+..|++|+|+|.
T Consensus 3 ~~EA~~ILgv~~~~~-~a~~~~Ik~~yr~Lm~~nhPDkGGS~---------yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 3 LDESCKILNIEESKG-DLNMDKINNRFNYLFEVNDKEKGGSF---------YLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHHTTCCGGGT-CCSHHHHHHHHHHHHHHTCGGGTCCH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcC-cCCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHHH
Confidence 457899999996411 48999999999999999999995332 46788999999985
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.07 E-value=0.18 Score=53.84 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=42.0
Q ss_pred hHHHHHHHHHH-HhhhhhhcccHHHHHHHhCcCCCCCCCCCH----HHHHHHHHHHHHHhCCCCCCCccccchHHHHHHH
Q 005087 625 KEKIRIEVRKE-LCKLETTCIDMASLLRALGIHVGGSFRPLS----QEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKF 699 (715)
Q Consensus 625 kE~~R~eiR~e-Le~~e~~c~DMaslY~vLGV~~eGg~tAT~----aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKF 699 (715)
...+|..+..+ |..+...-.| +|.+||++ .++ .+|++|||+||+..+++ +++|
T Consensus 609 ~~~l~~~ll~~~l~~~~~~~~~---~~~~lG~~------~~~~~lr~~~~~ayr~la~~~~~~-------------~~r~ 666 (681)
T 2pzi_A 609 VLQIRALVLGGALDWLKDNKAS---TNHILGFP------FTSHGLRLGVEASLRSLARVAPTQ-------------RHRY 666 (681)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCS---SSEETTEE------SSHHHHHHHHHHHHHHHHHHCSSH-------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCC---CcccCCCC------CChHHHHHHHHHHHHHHHHhCCCh-------------HHHH
Confidence 34455555443 3322233333 77899998 445 44999999999966554 3689
Q ss_pred HHHHHHHHHh
Q 005087 700 KLISRMREKF 709 (715)
Q Consensus 700 KeISeAYEVL 709 (715)
++|-.|+.|=
T Consensus 667 ~lvd~a~~vr 676 (681)
T 2pzi_A 667 TLVDMANKVR 676 (681)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhcccC
Confidence 9999999874
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.16 E-value=19 Score=32.33 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005087 595 MRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELC 637 (715)
Q Consensus 595 ~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe 637 (715)
..+-++|.|-...++.++.....-|++.. ++|.++...|.
T Consensus 66 ~~l~e~e~~~~~~l~~~q~~i~~lE~eL~---~~r~em~~ql~ 105 (131)
T 3tnu_A 66 NSLEETKGRYCMQLAQIQEMIGSVEEQLA---QLRCEMEQQNQ 105 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 35778888888888888777766666655 66666655543
No 38
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=74.74 E-value=12 Score=43.39 Aligned_cols=68 Identities=25% Similarity=0.244 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 005087 571 SRQRQLQIQAEEAQRLRKKKRAESMR--LLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETT 642 (715)
Q Consensus 571 sRQ~ELq~QAEEAqRlRKrkKAe~~R--~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~ 642 (715)
.|.+|..+.+-|.|++.-..+||.+| ||+|+.... .+|.-= |.+.| ....-|..|.+.+.+++....+
T Consensus 678 ~~~eQea~g~Lerqki~d~a~aE~~r~~Llel~a~s~-aves~g--~a~Ae-A~a~aea~~Ie~ea~v~~a~l~ 747 (861)
T 2zuo_A 678 QRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM-AVESTG--NAKAE-AESRAEAARIEGEGSVLQAKLK 747 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-Hhhhcc--hhHHH-HHHHHHHHHHhhHHHHHHHHhh
Confidence 36667777777888888888888888 777766433 233221 22222 2222446777777777766553
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.28 E-value=24 Score=30.42 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005087 567 EEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKK 617 (715)
Q Consensus 567 eEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkK 617 (715)
-+|+.|.+.|+.+.++++-.+.+.++|-.+++++--=--.=|-++|+...+
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 468888888888888888777777777666665544333334445554443
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.73 E-value=31 Score=30.71 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005087 585 RLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKEL 636 (715)
Q Consensus 585 RlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eL 636 (715)
-++..+.+=...+-++|.|-...++.++.....-|++.. ++|.++...|
T Consensus 54 ~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~---~~r~e~~~ql 102 (129)
T 3tnu_B 54 NVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ---KAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHH
Confidence 444443333235678888888888888777766665555 6666655553
No 41
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.34 E-value=23 Score=29.83 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHH
Q 005087 596 RLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRA 675 (715)
Q Consensus 596 R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKL 675 (715)
.+-++|.|-...++++......-|++.. ++|.++...+. .+=..|.|.. +-+.|| .+||||
T Consensus 16 ~l~e~e~~~~~~~~~~q~~i~~lE~eL~---~~r~e~~~q~~----------EYq~LlnvK~-----~Ld~EI-atYRkL 76 (84)
T 1gk4_A 16 QMREMEENFAVEAANYQDTIGRLQDEIQ---NMKEEMARHLR----------EYQDLLNVKM-----ALDIEI-ATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHH-----HHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHH-----hhHHHH-HHHHHH
Confidence 4668888887778887777776666655 66666655543 2223333331 223356 789988
Q ss_pred H
Q 005087 676 L 676 (715)
Q Consensus 676 A 676 (715)
.
T Consensus 77 L 77 (84)
T 1gk4_A 77 L 77 (84)
T ss_dssp H
T ss_pred H
Confidence 6
No 42
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.49 E-value=15 Score=31.25 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHH
Q 005087 596 RLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRA 675 (715)
Q Consensus 596 R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKL 675 (715)
++-++|.|-...++.+......-|++.. ++|.++...+. .+=..|.|.. +-+.|| .+||||
T Consensus 18 ~l~e~E~~~~~~l~~~q~~i~~lE~el~---~~r~e~~~ql~----------EYq~LlnvK~-----~Le~EI-atYRkL 78 (86)
T 1x8y_A 18 KLRDLEDSLARERDTSRRLLAEKEREMA---EMRARMQQQLD----------EYQELLDIKL-----ALDMEI-HAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHH-----HHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHH-----hhHHHH-HHHHHH
Confidence 5667787777777777777776666555 66666665543 2333333331 233456 789988
Q ss_pred H
Q 005087 676 L 676 (715)
Q Consensus 676 A 676 (715)
.
T Consensus 79 L 79 (86)
T 1x8y_A 79 L 79 (86)
T ss_dssp H
T ss_pred H
Confidence 6
No 43
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=58.90 E-value=45 Score=30.42 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhhhc-------------------------------ccHHHHHHHhCcCCC
Q 005087 619 EENMNLKEKIRIEVRKELCKLETTC-------------------------------IDMASLLRALGIHVG 658 (715)
Q Consensus 619 Eeea~~kE~~R~eiR~eLe~~e~~c-------------------------------~DMaslY~vLGV~~e 658 (715)
++...+-.+||...|.+++.+.... +-|..+|..|||++.
T Consensus 39 ~eL~~LI~KWr~asq~aaeeLf~~~~~rv~rMGG~~~~~~~~~~~~~~~~~~e~e~fTm~~mLk~L~Id~~ 109 (122)
T 3viq_A 39 KDLQTLIQKWKNAAQQAAEVLFKPMAERIRLAGGVTQSFRIEEGENKGQIQEVRTEFTMSMFLNQFGVPVH 109 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCSSTTTTCEEEEEECCCHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccccccccccccccHHHHHHHcCCCHH
Confidence 3456788899999999988773211 248999999999975
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.70 E-value=1.3e+02 Score=31.35 Aligned_cols=12 Identities=8% Similarity=-0.172 Sum_probs=4.9
Q ss_pred CCcccCCCCccc
Q 005087 110 NKFEDLGDDECR 121 (715)
Q Consensus 110 ~~s~~~d~ddc~ 121 (715)
.+-..++...|.
T Consensus 123 ~~L~~L~L~~n~ 134 (597)
T 3oja_B 123 PLLTVLVLERND 134 (597)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeeCCC
Confidence 333344444443
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.99 E-value=68 Score=27.27 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005087 568 EWASRQRQLQIQAEEAQRLRKKKRAESMRLLDME 601 (715)
Q Consensus 568 EWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemE 601 (715)
+|+.|-+.|+.+.++.+-.+.+.++|-.++++.-
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666555554433
No 46
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=51.42 E-value=88 Score=32.86 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHh
Q 005087 625 KEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRF 679 (715)
Q Consensus 625 kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKf 679 (715)
.+.+|.+++..-++.....+=+..+-..-+|. +|+++|.+.+.++|..|
T Consensus 319 ~e~~~e~~~~~Ae~~vk~~Lil~~Ia~~e~I~------vt~eev~~~i~~~A~~y 367 (433)
T 3gty_X 319 EEKFREELKERILDDIKRDRVIEVLAQEKGIS------VNDEELEKEAEELAPFW 367 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------CCHHHHHHHHTTSTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHc
Confidence 35566666666555555555566777788887 67999999999999877
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.01 E-value=1.8e+02 Score=30.29 Aligned_cols=8 Identities=13% Similarity=-0.359 Sum_probs=3.0
Q ss_pred cCCCCccc
Q 005087 114 DLGDDECR 121 (715)
Q Consensus 114 ~~d~ddc~ 121 (715)
.++...|.
T Consensus 103 ~L~L~~n~ 110 (597)
T 3oja_B 103 KLYMGFNA 110 (597)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 33333333
No 48
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=38.37 E-value=2.7e+02 Score=26.51 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhC
Q 005087 666 QEVHAAYKRALLRFH 680 (715)
Q Consensus 666 aEIKKAYRKLALKfH 680 (715)
.++.+.|+..+.+..
T Consensus 154 ~~~~~~~~~~~~~~~ 168 (233)
T 4efa_E 154 DDIMREYGEKAQRAP 168 (233)
T ss_dssp HHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhCCCC
Confidence 567788887776544
No 49
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=38.29 E-value=3e+02 Score=27.06 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=14.2
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q 005087 657 VGGSFRPLSQEVHAAYKRAL 676 (715)
Q Consensus 657 ~eGg~tAT~aEIKKAYRKLA 676 (715)
..++...+..|++.+++.+-
T Consensus 133 ~d~dG~Is~~El~~~L~~lg 152 (323)
T 1ij5_A 133 VSGSGKFSFQDLKQVLAKYA 152 (323)
T ss_dssp STTSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHcC
Confidence 34445688888888888754
No 50
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.45 E-value=1.6e+02 Score=32.95 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 005087 558 TDEYKRAMEEEWASRQRQLQ 577 (715)
Q Consensus 558 tdeyK~A~EeEWasRQ~ELq 577 (715)
++++|+-+|||=.++|+=+.
T Consensus 293 ~~elkqrqeee~r~~qew~~ 312 (551)
T 2b5u_A 293 PDQVKQRQDEENRRQQEWDA 312 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 56677777777665555443
No 51
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.04 E-value=73 Score=27.76 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005087 596 RLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKE 635 (715)
Q Consensus 596 R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~e 635 (715)
++-++|.+-...++.+......-|++.. ++|.++...
T Consensus 27 ~l~e~E~~~~~e~~~~q~~i~~lE~eL~---~~r~e~~~q 63 (95)
T 3mov_A 27 RIQELEDLLAKEKDNSRRMLTDKEREMA---EIRDQMQQQ 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3556666666666666666555555444 455555444
No 52
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=36.47 E-value=1.1e+02 Score=27.22 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.9
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFH 680 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfH 680 (715)
+..+-..-||. +|+++|.+++.++|..|-
T Consensus 98 l~~ia~~e~I~------vsdeev~~~i~~~A~~y~ 126 (170)
T 2nsa_A 98 IEVLAQEKGIS------VNDEELEKEAEELAPFWG 126 (170)
T ss_dssp HHHHHHHHTCC------CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCC------CCHHHHHHHHHHHHHHcC
Confidence 45666777777 679999999999999985
No 53
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=33.48 E-value=1e+02 Score=30.38 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=14.7
Q ss_pred hcccH---HHHHHHhCcCCCCCCCCCHHHHHHHHHH
Q 005087 642 TCIDM---ASLLRALGIHVGGSFRPLSQEVHAAYKR 674 (715)
Q Consensus 642 ~c~DM---aslY~vLGV~~eGg~tAT~aEIKKAYRK 674 (715)
+.++. ..+|..||+.+. ..+|...++.
T Consensus 137 G~Is~~El~~~L~~lg~~~~------~~~i~~l~~~ 166 (323)
T 1ij5_A 137 GKFSFQDLKQVLAKYADTIP------EGPLKKLFVM 166 (323)
T ss_dssp SCCCHHHHHHHHHHHHTTSC------SSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCCC------HHHHHHHHHH
Confidence 44554 445666776643 4456555543
No 54
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=33.12 E-value=2.8e+02 Score=25.23 Aligned_cols=45 Identities=33% Similarity=0.398 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Q 005087 570 ASRQRQLQIQAE----EAQRLRKKKRAESMRLL-DMERRQKQRLEEIRET 614 (715)
Q Consensus 570 asRQ~ELq~QAE----EAqRlRKrkKAe~~R~l-emERRqKQRlEe~RE~ 614 (715)
+.|-++|-.|-| +|.+.=+++.||+.|+| +.+.|.++=-++||+.
T Consensus 12 AerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~ 61 (105)
T 3v6i_B 12 AEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRER 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 44455556667777754 3444444444455543
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.21 E-value=4.3e+02 Score=27.05 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005087 600 MERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKE 635 (715)
Q Consensus 600 mERRqKQRlEe~RE~qkKrEeea~~kE~~R~eiR~e 635 (715)
|.++++++-+..-+.+..++.-....+.++.+++.-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 444444443333344444444344444444444443
No 56
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=28.91 E-value=1.7e+02 Score=30.31 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 005087 625 KEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFH 680 (715)
Q Consensus 625 kE~~R~eiR~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfH 680 (715)
++.+|..+...+. ..+=+..+-..-+|. +|+++|++.+..+|..|-
T Consensus 337 ~e~~~~~Ae~~vk----~~Lil~~ia~~e~i~------vt~eev~~~i~~~a~~y~ 382 (392)
T 1t11_A 337 RELFEEQAKRRVV----VGLLLGEVIRTHELK------ADEEKVKALITEMATAYE 382 (392)
T ss_dssp GGGTHHHHHHHHH----HHHHHHHHHHHTTCC------CCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHcC
Confidence 4445555555544 222244666777777 679999999999998884
No 57
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.42 E-value=3.4e+02 Score=29.94 Aligned_cols=8 Identities=25% Similarity=0.385 Sum_probs=4.0
Q ss_pred ceEEEecC
Q 005087 35 NVVLIDVD 42 (715)
Q Consensus 35 nvv~IDvD 42 (715)
-|.||+.|
T Consensus 10 pv~li~~~ 17 (592)
T 1f5n_A 10 PMCLIENT 17 (592)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEeC
Confidence 34555544
No 58
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=26.79 E-value=4.8e+02 Score=25.93 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=12.7
Q ss_pred HHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 005087 646 MASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHP 681 (715)
Q Consensus 646 MaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHP 681 (715)
+..|+..+|.+.. ..+.++.-+|+|.--..+|-
T Consensus 439 ~~~L~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~ 471 (474)
T 3d5k_A 439 EVNLYKALGGGWN---QQTVTQQQTAKKEDPQAHHH 471 (474)
T ss_dssp HHHHHHHHTCSCC---SSCC----------------
T ss_pred HHHHHHHhCCCCC---cccccchhhhcccCcccccc
Confidence 5678999999865 24677889999876665553
No 59
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.25 E-value=5.4e+02 Score=30.41 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005087 553 EKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEV 632 (715)
Q Consensus 553 EklkEtdeyK~A~EeEWasRQ~ELq~QAEEAqRlRKrkKAe~~R~lemERRqKQRlEe~RE~qkKrEeea~~kE~~R~ei 632 (715)
+.++....=+.+.+.+-.+=+.+++...++-+++.|++++-.++...+..+..+.|..+..+-.+-+.....++....+-
T Consensus 970 ~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhcccHHHHHHHhCcCCCCCCCCCHHHHHHHH
Q 005087 633 RKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAY 672 (715)
Q Consensus 633 R~eLe~~e~~c~DMaslY~vLGV~~eGg~tAT~aEIKKAY 672 (715)
..++........+-....-.+.+. +.+++|
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 1079 (1080)
T 2dfs_A 1050 AKEITETMEKKLVEETKQLELDLN----------DERLRY 1079 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhc
No 60
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=25.22 E-value=3.1e+02 Score=23.65 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=5.4
Q ss_pred hhcccHHHHHHH
Q 005087 641 TTCIDMASLLRA 652 (715)
Q Consensus 641 ~~c~DMaslY~v 652 (715)
...+|..+|+..
T Consensus 70 ~~GI~~eeL~~~ 81 (86)
T 3nr7_A 70 ADGIDPNELLNS 81 (86)
T ss_dssp HTCCCHHHHHHH
T ss_pred HcCCCHHHHHhh
Confidence 344444444433
No 61
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=22.89 E-value=7.3e+02 Score=27.86 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=14.0
Q ss_pred hhhhhhhccccccccccccccccccCCCccc
Q 005087 512 EVKQQVIGSMSNYQLDAGADVRRTQGVSLTS 542 (715)
Q Consensus 512 e~k~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 542 (715)
..+..||.+-- .-+.+|+-++-.+.+.
T Consensus 266 nthDAII~FPe----~Sg~ePlYISvs~ilt 292 (551)
T 2b5u_A 266 NTRDAVIRFPK----DSGHNAVYVSVSDVLS 292 (551)
T ss_dssp TEEEEEEECCG----GGCCCCEEEEEEECCC
T ss_pred CccceEEECCC----CCCCCceEEEEeecCC
Confidence 33445554432 4466777666555543
No 62
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=21.41 E-value=1.2e+02 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=20.9
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 005087 654 GIHVGGSFRPLSQEVHAAYKRALLRFHPDRASK 686 (715)
Q Consensus 654 GV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~ 686 (715)
|+|++||..+-..-|.+.|++ ++|++...
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 372 (382)
T 1a6q_A 344 SLPPGGELASKRNVIEAVYNR----LNPYKNDD 372 (382)
T ss_dssp SCCTTTGGGGGHHHHHHHHHH----HCCC----
T ss_pred CCCCCcchhHHHHHHHHHHHH----hCCCcccc
Confidence 688888877778889999986 78887654
No 63
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.40 E-value=43 Score=36.58 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=12.2
Q ss_pred cchHHHHHHHHHHHHHHHHhh
Q 005087 690 RQQVEAEEKFKLISRMREKFL 710 (715)
Q Consensus 690 req~eAEEKFKeISeAYEVL~ 710 (715)
++|....++=|.|+.-...|.
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~ 524 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALK 524 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 455666676666665554443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.93 E-value=4.9e+02 Score=26.60 Aligned_cols=14 Identities=36% Similarity=0.200 Sum_probs=5.4
Q ss_pred cHHHHHHHHHHHHH
Q 005087 558 TDEYKRAMEEEWAS 571 (715)
Q Consensus 558 tdeyK~A~EeEWas 571 (715)
+-+-|+..=++|-.
T Consensus 364 ~l~~~~~~le~~~~ 377 (487)
T 3oja_A 364 TLEQKKKALDEQVS 377 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334433333433
Done!