Query 005088
Match_columns 715
No_of_seqs 511 out of 4136
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.3E-37 5E-42 356.1 45.9 447 56-519 188-767 (2102)
2 KOG0166 Karyopherin (importin) 100.0 2.9E-37 6.3E-42 309.9 29.8 399 56-512 65-482 (514)
3 KOG0166 Karyopherin (importin) 100.0 1.1E-36 2.4E-41 305.8 28.1 320 57-400 109-435 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.3E-36 2.7E-41 280.8 24.2 408 53-515 67-495 (526)
5 PLN03200 cellulose synthase-in 100.0 9.1E-35 2E-39 334.8 43.8 432 56-517 143-681 (2102)
6 COG5064 SRP1 Karyopherin (impo 100.0 5E-36 1.1E-40 276.9 21.7 324 55-401 112-443 (526)
7 KOG4224 Armadillo repeat prote 100.0 2.3E-33 5.1E-38 261.5 17.2 388 79-526 63-456 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.9E-32 4.2E-37 255.4 22.6 386 76-518 98-495 (550)
9 PF05804 KAP: Kinesin-associat 99.9 6.1E-23 1.3E-27 219.5 38.6 378 79-519 265-652 (708)
10 PHA02713 hypothetical protein; 99.9 1.3E-24 2.7E-29 234.7 17.6 160 538-702 16-177 (557)
11 PHA03098 kelch-like protein; P 99.9 7E-24 1.5E-28 232.0 17.1 151 543-697 5-157 (534)
12 KOG4441 Proteins containing BT 99.9 9.6E-24 2.1E-28 226.3 16.5 160 538-697 27-186 (571)
13 PHA02790 Kelch-like protein; P 99.9 7.7E-24 1.7E-28 225.6 13.5 149 540-690 15-167 (480)
14 KOG4199 Uncharacterized conser 99.9 1.2E-20 2.7E-25 175.2 32.5 403 12-481 20-450 (461)
15 PF05804 KAP: Kinesin-associat 99.9 7.2E-21 1.6E-25 203.7 34.5 355 61-478 290-652 (708)
16 KOG4350 Uncharacterized conser 99.9 1.6E-23 3.4E-28 198.0 11.0 160 539-698 36-198 (620)
17 KOG2122 Beta-catenin-binding p 99.9 1.1E-19 2.5E-24 196.3 24.4 355 80-477 211-603 (2195)
18 KOG1048 Neural adherens juncti 99.8 3E-18 6.5E-23 178.8 22.7 356 106-517 235-685 (717)
19 KOG4500 Rho/Rac GTPase guanine 99.8 3.4E-17 7.3E-22 157.4 25.3 425 78-517 57-520 (604)
20 KOG2075 Topoisomerase TOP1-int 99.8 4.7E-18 1E-22 165.9 16.3 169 538-707 105-279 (521)
21 KOG4591 Uncharacterized conser 99.8 1.5E-18 3.2E-23 148.3 10.5 162 533-698 52-218 (280)
22 KOG1048 Neural adherens juncti 99.8 3.1E-17 6.6E-22 171.3 21.9 373 58-490 234-699 (717)
23 KOG4199 Uncharacterized conser 99.8 1.5E-15 3.2E-20 141.7 28.8 313 75-410 119-453 (461)
24 KOG2122 Beta-catenin-binding p 99.8 3.7E-17 7.9E-22 177.3 20.6 323 76-403 251-603 (2195)
25 KOG4682 Uncharacterized conser 99.7 1.4E-17 2.9E-22 158.4 12.1 164 533-697 55-222 (488)
26 PF00651 BTB: BTB/POZ domain; 99.7 2.1E-17 4.5E-22 139.9 9.3 106 539-644 2-110 (111)
27 PF10508 Proteasom_PSMB: Prote 99.7 3.8E-14 8.2E-19 151.4 35.0 393 76-516 51-462 (503)
28 KOG0783 Uncharacterized conser 99.7 1.4E-16 3E-21 164.2 12.1 161 546-706 709-876 (1267)
29 PF10508 Proteasom_PSMB: Prote 99.7 8.4E-14 1.8E-18 148.8 30.3 365 108-524 42-428 (503)
30 KOG4500 Rho/Rac GTPase guanine 99.6 1.4E-13 2.9E-18 132.9 26.3 346 131-514 57-429 (604)
31 smart00225 BTB Broad-Complex, 99.6 4.6E-15 1E-19 120.3 9.3 90 549-638 1-90 (90)
32 KOG1222 Kinesin associated pro 99.6 9.1E-13 2E-17 128.9 25.3 400 56-522 259-669 (791)
33 PRK09687 putative lyase; Provi 99.6 3E-13 6.4E-18 132.3 19.2 255 157-513 23-279 (280)
34 PRK13800 putative oxidoreducta 99.5 1.9E-12 4E-17 148.8 26.8 276 103-512 620-895 (897)
35 PRK09687 putative lyase; Provi 99.5 9.8E-13 2.1E-17 128.6 20.3 254 105-472 24-279 (280)
36 KOG1293 Proteins containing ar 99.5 2.4E-11 5.1E-16 124.3 26.5 392 76-518 22-535 (678)
37 PRK13800 putative oxidoreducta 99.5 1.3E-11 2.8E-16 141.8 27.7 263 76-472 634-896 (897)
38 KOG1222 Kinesin associated pro 99.5 1.7E-11 3.6E-16 120.2 23.8 357 58-478 301-666 (791)
39 PF04826 Arm_2: Armadillo-like 99.5 1.2E-11 2.7E-16 117.8 22.1 193 57-278 12-205 (254)
40 PF04826 Arm_2: Armadillo-like 99.4 1.4E-11 3.1E-16 117.4 18.7 195 101-321 9-206 (254)
41 cd00256 VATPase_H VATPase_H, r 99.4 3E-10 6.6E-15 115.3 25.2 345 158-518 54-427 (429)
42 KOG2171 Karyopherin (importin) 99.4 9.6E-10 2.1E-14 120.1 30.4 401 76-505 93-535 (1075)
43 KOG2023 Nuclear transport rece 99.3 6.4E-11 1.4E-15 120.7 19.3 308 105-475 129-505 (885)
44 KOG1293 Proteins containing ar 99.3 4.3E-10 9.2E-15 115.4 23.8 366 56-476 50-534 (678)
45 cd00020 ARM Armadillo/beta-cat 99.3 4.6E-11 9.9E-16 102.7 14.4 117 203-319 3-119 (120)
46 cd00020 ARM Armadillo/beta-cat 99.3 5.4E-11 1.2E-15 102.2 13.9 117 245-361 3-119 (120)
47 KOG0168 Putative ubiquitin fus 99.3 9.8E-10 2.1E-14 115.3 24.3 259 58-344 168-437 (1051)
48 KOG2171 Karyopherin (importin) 99.3 2.7E-07 5.9E-12 101.5 43.2 334 49-399 194-547 (1075)
49 KOG2160 Armadillo/beta-catenin 99.2 6.7E-10 1.5E-14 107.1 19.3 192 67-277 87-281 (342)
50 PF01602 Adaptin_N: Adaptin N 99.2 7.2E-10 1.6E-14 122.1 22.7 399 61-518 79-485 (526)
51 PF01602 Adaptin_N: Adaptin N 99.2 1.7E-09 3.7E-14 119.1 25.1 351 76-518 55-408 (526)
52 KOG2023 Nuclear transport rece 99.2 9.4E-10 2E-14 112.4 20.7 316 49-400 120-504 (885)
53 cd00256 VATPase_H VATPase_H, r 99.2 1.4E-08 3.1E-13 103.3 26.9 318 57-400 53-424 (429)
54 KOG3678 SARM protein (with ste 99.2 7.5E-10 1.6E-14 108.4 16.2 271 243-518 174-454 (832)
55 PTZ00429 beta-adaptin; Provisi 99.1 1.6E-07 3.5E-12 103.4 31.8 352 76-517 81-434 (746)
56 KOG2160 Armadillo/beta-catenin 99.0 2.1E-08 4.6E-13 96.9 19.2 184 180-364 98-284 (342)
57 KOG1241 Karyopherin (importin) 99.0 1.1E-06 2.3E-11 92.3 32.3 343 131-519 105-480 (859)
58 PTZ00429 beta-adaptin; Provisi 99.0 1.5E-07 3.2E-12 103.7 27.2 360 59-518 34-399 (746)
59 KOG0168 Putative ubiquitin fus 99.0 1.4E-07 3E-12 99.6 25.1 219 55-302 209-437 (1051)
60 KOG0511 Ankyrin repeat protein 98.9 6E-09 1.3E-13 99.2 10.7 141 557-698 301-451 (516)
61 KOG2759 Vacuolar H+-ATPase V1 98.9 2.8E-07 6.2E-12 90.3 22.4 343 159-518 67-440 (442)
62 KOG0946 ER-Golgi vesicle-tethe 98.9 7.3E-07 1.6E-11 93.6 26.4 331 55-411 20-410 (970)
63 KOG1241 Karyopherin (importin) 98.9 6.9E-07 1.5E-11 93.6 24.5 420 75-514 229-709 (859)
64 KOG0946 ER-Golgi vesicle-tethe 98.9 2.1E-06 4.6E-11 90.3 27.2 287 105-411 23-357 (970)
65 KOG3678 SARM protein (with ste 98.9 3.6E-07 7.9E-12 90.0 20.4 276 96-402 172-453 (832)
66 KOG1062 Vesicle coat complex A 98.9 2.7E-06 5.8E-11 89.9 28.0 394 62-519 108-547 (866)
67 KOG2759 Vacuolar H+-ATPase V1 98.9 2.9E-06 6.4E-11 83.4 26.1 317 58-400 66-437 (442)
68 PF03224 V-ATPase_H_N: V-ATPas 98.8 7.5E-08 1.6E-12 97.2 15.2 222 250-505 56-303 (312)
69 KOG1517 Guanine nucleotide bin 98.8 8.6E-08 1.9E-12 103.2 15.2 269 33-326 448-738 (1387)
70 KOG1824 TATA-binding protein-i 98.8 2.2E-05 4.7E-10 84.5 31.9 412 71-522 578-1042(1233)
71 KOG2973 Uncharacterized conser 98.8 8.8E-07 1.9E-11 83.2 18.5 293 210-518 6-317 (353)
72 KOG0213 Splicing factor 3b, su 98.8 3E-06 6.5E-11 88.4 23.9 251 257-519 807-1068(1172)
73 PF03224 V-ATPase_H_N: V-ATPas 98.7 3.8E-07 8.3E-12 92.0 15.7 226 105-352 56-304 (312)
74 KOG0211 Protein phosphatase 2A 98.7 3.7E-06 8E-11 91.8 22.6 407 75-517 249-665 (759)
75 KOG0212 Uncharacterized conser 98.7 1.3E-06 2.8E-11 88.4 17.6 353 103-517 83-445 (675)
76 KOG4413 26S proteasome regulat 98.6 9.4E-06 2E-10 76.8 21.1 305 183-518 61-379 (524)
77 KOG4413 26S proteasome regulat 98.6 2.5E-05 5.4E-10 74.0 23.7 337 131-492 97-457 (524)
78 COG5215 KAP95 Karyopherin (imp 98.6 7.7E-05 1.7E-09 76.0 27.4 411 74-518 189-670 (858)
79 COG5215 KAP95 Karyopherin (imp 98.6 5E-05 1.1E-09 77.3 25.6 386 75-520 53-483 (858)
80 TIGR02270 conserved hypothetic 98.6 1.2E-05 2.6E-10 82.9 21.9 209 209-516 88-296 (410)
81 KOG1242 Protein containing ada 98.5 8.7E-06 1.9E-10 84.4 19.6 335 159-518 98-446 (569)
82 KOG0213 Splicing factor 3b, su 98.5 2.3E-05 5E-10 82.0 21.8 257 106-403 801-1067(1172)
83 KOG1062 Vesicle coat complex A 98.5 6.1E-05 1.3E-09 80.0 25.0 309 131-517 122-452 (866)
84 KOG1517 Guanine nucleotide bin 98.5 7.1E-06 1.5E-10 88.9 17.5 226 131-364 485-734 (1387)
85 KOG1060 Vesicle coat complex A 98.4 0.00014 3.1E-09 77.0 25.5 353 108-518 39-460 (968)
86 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00014 3.1E-09 74.2 24.6 219 131-361 40-268 (371)
87 KOG0212 Uncharacterized conser 98.4 4.6E-05 9.9E-10 77.6 20.3 322 55-406 82-411 (675)
88 KOG1242 Protein containing ada 98.4 0.00025 5.5E-09 73.8 25.6 367 105-516 97-483 (569)
89 KOG1059 Vesicle coat complex A 98.4 0.00054 1.2E-08 72.1 27.6 222 59-329 146-372 (877)
90 PF14664 RICTOR_N: Rapamycin-i 98.4 0.0002 4.4E-09 73.1 24.6 314 145-473 13-362 (371)
91 TIGR02270 conserved hypothetic 98.3 8.7E-05 1.9E-09 76.6 21.6 243 104-476 54-297 (410)
92 COG5369 Uncharacterized conser 98.3 1.7E-06 3.8E-11 86.9 8.7 297 80-399 406-739 (743)
93 PF05536 Neurochondrin: Neuroc 98.3 0.00065 1.4E-08 73.3 29.0 202 57-280 5-215 (543)
94 KOG1061 Vesicle coat complex A 98.3 4.6E-05 1E-09 81.0 19.5 382 80-521 30-420 (734)
95 KOG1059 Vesicle coat complex A 98.3 0.0002 4.4E-09 75.1 23.5 223 159-409 146-372 (877)
96 KOG2973 Uncharacterized conser 98.3 0.00027 5.8E-09 66.9 21.7 270 107-404 6-318 (353)
97 COG5181 HSH155 U2 snRNP splice 98.3 5.5E-05 1.2E-09 77.7 18.1 258 105-403 605-872 (975)
98 PF05536 Neurochondrin: Neuroc 98.3 0.0014 3.1E-08 70.8 30.1 243 106-364 7-263 (543)
99 KOG1789 Endocytosis protein RM 98.3 0.0015 3.3E-08 71.4 29.3 447 56-519 1433-2079(2235)
100 COG5369 Uncharacterized conser 98.3 2.5E-05 5.4E-10 78.9 15.0 187 224-410 406-603 (743)
101 KOG1824 TATA-binding protein-i 98.2 0.00022 4.8E-09 77.1 22.3 430 55-516 429-886 (1233)
102 KOG0783 Uncharacterized conser 98.2 1.4E-06 3.1E-11 91.7 5.5 66 546-611 557-634 (1267)
103 KOG2838 Uncharacterized conser 98.2 3.2E-06 7E-11 77.2 6.9 143 501-653 199-396 (401)
104 KOG4646 Uncharacterized conser 98.2 1.8E-05 3.9E-10 64.8 10.1 126 55-205 14-139 (173)
105 KOG1789 Endocytosis protein RM 98.2 0.0011 2.4E-08 72.4 26.0 301 79-401 1741-2116(2235)
106 KOG4646 Uncharacterized conser 98.2 1.8E-05 3.9E-10 64.8 9.8 119 131-258 32-150 (173)
107 KOG1060 Vesicle coat complex A 98.1 0.0014 3E-08 69.8 25.4 375 60-497 38-476 (968)
108 KOG1240 Protein kinase contain 98.1 7.3E-05 1.6E-09 82.7 16.4 282 78-402 438-726 (1431)
109 KOG0211 Protein phosphatase 2A 98.1 0.00024 5.2E-09 78.0 19.9 404 29-474 247-663 (759)
110 PF10165 Ric8: Guanine nucleot 98.1 0.00015 3.2E-09 76.5 17.4 273 188-478 4-340 (446)
111 COG1413 FOG: HEAT repeat [Ener 98.1 0.00058 1.3E-08 70.3 21.1 187 157-401 43-242 (335)
112 KOG2734 Uncharacterized conser 98.0 0.00074 1.6E-08 67.1 19.7 222 196-418 114-366 (536)
113 COG5181 HSH155 U2 snRNP splice 98.0 2.5E-05 5.3E-10 80.1 9.5 264 209-519 606-873 (975)
114 KOG2259 Uncharacterized conser 98.0 0.00011 2.4E-09 76.4 13.9 184 208-403 199-404 (823)
115 COG1413 FOG: HEAT repeat [Ener 98.0 0.0027 6E-08 65.3 23.9 214 104-397 43-269 (335)
116 KOG1240 Protein kinase contain 98.0 0.00039 8.4E-09 77.3 17.8 284 180-517 438-726 (1431)
117 KOG2734 Uncharacterized conser 97.9 0.005 1.1E-07 61.4 23.3 265 82-362 103-400 (536)
118 PF00514 Arm: Armadillo/beta-c 97.9 1.6E-05 3.5E-10 52.5 3.8 40 93-144 1-40 (41)
119 KOG1077 Vesicle coat complex A 97.9 0.0044 9.5E-08 65.3 22.6 271 131-424 126-419 (938)
120 PF00514 Arm: Armadillo/beta-c 97.9 3.1E-05 6.6E-10 51.1 4.7 40 238-277 1-40 (41)
121 KOG0915 Uncharacterized conser 97.9 0.0014 3E-08 74.9 20.2 324 179-518 971-1308(1702)
122 KOG2259 Uncharacterized conser 97.8 0.0002 4.3E-09 74.5 12.6 219 159-399 236-473 (823)
123 PF10165 Ric8: Guanine nucleot 97.8 0.0015 3.2E-08 69.1 18.8 188 83-276 1-216 (446)
124 COG5240 SEC21 Vesicle coat com 97.7 0.026 5.6E-07 58.4 25.3 275 180-517 279-556 (898)
125 KOG1061 Vesicle coat complex A 97.7 0.0013 2.8E-08 70.4 17.0 349 133-520 31-383 (734)
126 KOG4535 HEAT and armadillo rep 97.7 0.004 8.7E-08 62.6 18.5 391 76-513 120-600 (728)
127 KOG2716 Polymerase delta-inter 97.7 0.00027 5.9E-09 65.3 9.4 94 550-644 7-104 (230)
128 PF12348 CLASP_N: CLASP N term 97.7 0.00042 9.1E-09 66.8 11.4 182 301-519 17-209 (228)
129 PF12460 MMS19_C: RNAPII trans 97.7 0.017 3.6E-07 61.1 24.1 362 106-518 1-396 (415)
130 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0026 5.7E-08 60.6 15.6 226 76-319 162-427 (432)
131 PF09759 Atx10homo_assoc: Spin 97.6 0.00023 5E-09 56.7 7.4 66 182-247 3-70 (102)
132 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0021 4.4E-08 61.2 14.4 254 256-517 156-429 (432)
133 KOG1077 Vesicle coat complex A 97.6 0.022 4.7E-07 60.4 23.0 283 180-517 126-434 (938)
134 PF13646 HEAT_2: HEAT repeats; 97.6 0.00037 7.9E-09 55.5 8.5 86 293-397 1-88 (88)
135 KOG4535 HEAT and armadillo rep 97.6 0.00042 9E-09 69.4 10.2 305 129-478 268-606 (728)
136 KOG0567 HEAT repeat-containing 97.6 0.0066 1.4E-07 56.6 16.8 104 266-399 173-278 (289)
137 PF12348 CLASP_N: CLASP N term 97.6 0.0022 4.7E-08 61.9 14.6 180 179-364 21-208 (228)
138 KOG0915 Uncharacterized conser 97.6 0.0047 1E-07 70.8 18.7 350 131-517 972-1345(1702)
139 COG5240 SEC21 Vesicle coat com 97.6 0.038 8.2E-07 57.2 23.4 234 262-517 203-443 (898)
140 KOG2838 Uncharacterized conser 97.5 0.00014 3E-09 66.8 5.7 91 541-631 124-219 (401)
141 PF13646 HEAT_2: HEAT repeats; 97.5 0.00023 4.9E-09 56.7 6.4 86 251-358 1-88 (88)
142 KOG3473 RNA polymerase II tran 97.4 0.00084 1.8E-08 51.1 7.6 74 555-629 25-111 (112)
143 KOG1943 Beta-tubulin folding c 97.4 0.04 8.7E-07 61.5 23.1 259 104-400 341-610 (1133)
144 KOG0567 HEAT repeat-containing 97.4 0.021 4.6E-07 53.4 17.3 225 209-516 38-280 (289)
145 COG5096 Vesicle coat complex, 97.3 0.13 2.8E-06 56.7 25.8 161 76-277 32-194 (757)
146 KOG1991 Nuclear transport rece 97.3 0.13 2.7E-06 57.2 24.7 288 58-370 411-719 (1010)
147 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00041 8.8E-09 49.3 3.9 55 305-360 1-55 (55)
148 PF02214 BTB_2: BTB/POZ domain 97.2 0.00031 6.7E-09 56.6 3.7 87 550-637 1-94 (94)
149 PF08569 Mo25: Mo25-like; Int 97.2 0.052 1.1E-06 54.6 19.9 204 203-409 72-291 (335)
150 PF09759 Atx10homo_assoc: Spin 97.2 0.0024 5.3E-08 51.0 8.4 67 223-289 2-70 (102)
151 KOG3036 Protein involved in ce 97.2 0.039 8.4E-07 50.9 16.9 182 80-277 96-290 (293)
152 KOG1987 Speckle-type POZ prote 97.2 0.00031 6.8E-09 70.8 3.9 131 556-686 109-244 (297)
153 PF07707 BACK: BTB And C-termi 97.1 0.001 2.2E-08 54.9 6.0 49 650-698 1-49 (103)
154 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00053 1.1E-08 48.8 3.7 53 347-399 1-55 (55)
155 COG5096 Vesicle coat complex, 97.1 0.039 8.5E-07 60.6 19.4 168 216-402 28-196 (757)
156 KOG1943 Beta-tubulin folding c 97.1 0.41 8.9E-06 53.9 26.5 271 54-364 334-613 (1133)
157 KOG3036 Protein involved in ce 97.1 0.21 4.6E-06 46.3 20.2 152 131-287 94-255 (293)
158 smart00185 ARM Armadillo/beta- 97.0 0.0015 3.3E-08 43.0 4.5 39 94-144 2-40 (41)
159 PF12460 MMS19_C: RNAPII trans 97.0 0.34 7.3E-06 51.3 24.5 337 78-477 17-396 (415)
160 smart00185 ARM Armadillo/beta- 96.9 0.0023 5E-08 42.1 5.2 38 240-277 3-40 (41)
161 KOG1058 Vesicle coat complex C 96.9 0.085 1.8E-06 56.6 18.7 300 131-473 114-423 (948)
162 smart00512 Skp1 Found in Skp1 96.9 0.006 1.3E-07 50.1 8.1 76 554-630 9-104 (104)
163 PF11822 DUF3342: Domain of un 96.8 0.0022 4.9E-08 62.0 5.9 89 557-645 14-104 (317)
164 KOG1078 Vesicle coat complex C 96.8 0.2 4.3E-06 54.3 20.5 69 209-282 247-315 (865)
165 PF08569 Mo25: Mo25-like; Int 96.8 0.15 3.3E-06 51.3 19.0 202 99-321 71-284 (335)
166 KOG4151 Myosin assembly protei 96.8 0.011 2.4E-07 63.8 11.5 243 93-359 493-738 (748)
167 KOG2062 26S proteasome regulat 96.8 0.21 4.5E-06 53.7 20.3 159 207-388 519-681 (929)
168 KOG4151 Myosin assembly protei 96.8 0.079 1.7E-06 57.5 17.5 220 145-378 492-718 (748)
169 PF04078 Rcd1: Cell differenti 96.7 0.075 1.6E-06 50.2 15.0 205 76-288 8-227 (262)
170 KOG1832 HIV-1 Vpr-binding prot 96.7 0.46 1E-05 52.1 22.1 344 131-486 368-784 (1516)
171 KOG1078 Vesicle coat complex C 96.6 0.17 3.6E-06 54.8 18.6 139 250-400 392-531 (865)
172 KOG0511 Ankyrin repeat protein 96.6 0.0064 1.4E-07 59.1 7.3 99 537-637 137-238 (516)
173 PF11841 DUF3361: Domain of un 96.6 0.045 9.7E-07 47.7 11.7 133 97-241 4-136 (160)
174 KOG1724 SCF ubiquitin ligase, 96.6 0.02 4.4E-07 50.3 9.7 100 554-654 12-139 (162)
175 KOG1058 Vesicle coat complex C 96.6 0.28 6.2E-06 52.8 19.7 214 105-364 244-465 (948)
176 PF12717 Cnd1: non-SMC mitotic 96.6 0.23 5E-06 45.4 17.1 94 262-364 1-94 (178)
177 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.36 7.8E-06 54.3 21.0 196 100-305 113-333 (802)
178 PF07814 WAPL: Wings apart-lik 96.5 0.14 3.1E-06 52.7 16.9 259 51-324 15-359 (361)
179 PRK14707 hypothetical protein; 96.5 2.2 4.8E-05 51.9 27.3 261 131-399 305-569 (2710)
180 smart00875 BACK BTB And C-term 96.4 0.0048 1E-07 50.5 4.8 48 650-697 1-48 (101)
181 PF11841 DUF3361: Domain of un 96.4 0.054 1.2E-06 47.2 11.1 124 201-325 5-136 (160)
182 PF12755 Vac14_Fab1_bd: Vacuol 96.4 0.028 6.1E-07 45.0 8.5 86 308-394 3-90 (97)
183 PF06025 DUF913: Domain of Unk 96.3 0.44 9.6E-06 49.2 19.3 184 227-410 4-241 (379)
184 PF08045 CDC14: Cell division 96.3 0.054 1.2E-06 51.6 11.6 99 180-278 106-207 (257)
185 PF06025 DUF913: Domain of Unk 96.3 0.2 4.3E-06 51.7 16.4 152 132-289 76-243 (379)
186 KOG1991 Nuclear transport rece 96.3 0.73 1.6E-05 51.5 21.0 165 135-307 391-563 (1010)
187 KOG4464 Signaling protein RIC- 96.2 0.4 8.6E-06 47.9 16.9 246 220-481 110-408 (532)
188 PF04078 Rcd1: Cell differenti 96.2 0.053 1.2E-06 51.2 10.6 180 79-276 66-260 (262)
189 KOG2062 26S proteasome regulat 96.2 0.26 5.6E-06 53.0 16.5 161 291-503 519-681 (929)
190 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.01 2.3E-07 48.8 5.0 75 445-519 42-118 (119)
191 COG5656 SXM1 Importin, protein 96.1 2.8 6E-05 45.6 24.3 294 56-375 407-724 (970)
192 KOG2274 Predicted importin 9 [ 96.0 1.9 4E-05 48.0 22.5 214 180-401 465-689 (1005)
193 PF11698 V-ATPase_H_C: V-ATPas 96.0 0.014 3.1E-07 48.0 5.1 71 208-278 44-115 (119)
194 PRK14707 hypothetical protein; 95.9 4.7 0.0001 49.3 26.4 209 141-359 274-484 (2710)
195 KOG1665 AFH1-interacting prote 95.9 0.024 5.2E-07 51.0 6.4 92 548-639 9-105 (302)
196 PF13764 E3_UbLigase_R4: E3 ub 95.8 2 4.4E-05 48.5 22.6 183 154-348 114-334 (802)
197 KOG1248 Uncharacterized conser 95.8 2.1 4.7E-05 49.0 22.2 221 131-364 669-900 (1176)
198 PF12717 Cnd1: non-SMC mitotic 95.8 0.47 1E-05 43.4 14.9 91 180-279 3-93 (178)
199 PF03931 Skp1_POZ: Skp1 family 95.7 0.034 7.3E-07 40.4 5.7 52 554-608 8-59 (62)
200 PF12755 Vac14_Fab1_bd: Vacuol 95.7 0.074 1.6E-06 42.6 8.1 92 266-360 3-94 (97)
201 KOG2032 Uncharacterized conser 95.7 3.2 6.9E-05 43.0 23.9 252 258-516 267-531 (533)
202 KOG2274 Predicted importin 9 [ 95.6 1.6 3.6E-05 48.4 20.1 317 59-402 447-781 (1005)
203 KOG1967 DNA repair/transcripti 95.6 0.14 2.9E-06 56.5 12.2 149 207-358 867-1020(1030)
204 KOG1832 HIV-1 Vpr-binding prot 95.6 0.59 1.3E-05 51.3 16.6 160 245-412 597-784 (1516)
205 KOG1788 Uncharacterized conser 95.6 5 0.00011 45.4 23.5 235 76-342 480-783 (2799)
206 PF14668 RICTOR_V: Rapamycin-i 95.5 0.044 9.6E-07 40.9 5.6 64 350-413 4-70 (73)
207 KOG4653 Uncharacterized conser 95.4 0.37 8E-06 52.8 14.4 209 180-399 742-962 (982)
208 KOG1566 Conserved protein Mo25 95.3 1 2.2E-05 43.6 15.6 201 202-404 74-289 (342)
209 KOG4653 Uncharacterized conser 95.3 0.41 8.8E-06 52.5 14.4 212 131-360 742-962 (982)
210 PF02985 HEAT: HEAT repeat; I 95.3 0.031 6.7E-07 33.9 3.6 28 335-362 2-29 (31)
211 KOG1020 Sister chromatid cohes 95.2 9 0.0002 45.5 29.4 144 56-236 811-960 (1692)
212 PF07814 WAPL: Wings apart-lik 95.2 0.68 1.5E-05 47.7 15.4 268 106-403 23-357 (361)
213 KOG1248 Uncharacterized conser 95.2 1 2.2E-05 51.5 17.3 218 76-320 667-898 (1176)
214 PF12719 Cnd3: Nuclear condens 95.1 0.73 1.6E-05 46.2 15.0 147 250-404 27-188 (298)
215 PF08045 CDC14: Cell division 95.0 0.28 6E-06 46.9 10.9 99 131-236 106-207 (257)
216 PF05004 IFRD: Interferon-rela 95.0 1.4 2.9E-05 44.3 16.4 181 180-364 58-259 (309)
217 PF05004 IFRD: Interferon-rela 94.9 2.1 4.5E-05 43.0 17.6 193 58-277 44-256 (309)
218 KOG1566 Conserved protein Mo25 94.9 2.5 5.3E-05 41.2 16.5 204 284-517 72-287 (342)
219 PF11701 UNC45-central: Myosin 94.8 0.15 3.3E-06 45.3 8.1 146 250-399 4-157 (157)
220 PF11701 UNC45-central: Myosin 94.7 0.24 5.2E-06 44.1 9.2 146 208-359 4-156 (157)
221 PF02985 HEAT: HEAT repeat; I 94.7 0.044 9.5E-07 33.3 3.2 29 447-475 1-29 (31)
222 KOG1967 DNA repair/transcripti 94.7 0.18 3.8E-06 55.7 9.6 151 156-317 866-1021(1030)
223 KOG2999 Regulator of Rac1, req 94.7 0.52 1.1E-05 49.0 12.3 165 56-240 82-246 (713)
224 KOG1020 Sister chromatid cohes 94.6 9.9 0.00022 45.2 23.2 117 290-411 815-931 (1692)
225 KOG1243 Protein kinase [Genera 94.4 0.23 5E-06 53.3 9.6 187 204-399 327-513 (690)
226 KOG1243 Protein kinase [Genera 94.3 0.19 4E-06 54.0 8.7 185 248-473 329-513 (690)
227 KOG2025 Chromosome condensatio 94.3 2.6 5.7E-05 45.5 16.6 104 249-358 85-189 (892)
228 KOG2714 SETA binding protein S 94.2 0.18 3.9E-06 50.6 7.8 86 550-635 13-102 (465)
229 KOG2025 Chromosome condensatio 94.2 1.3 2.7E-05 47.8 14.2 129 180-317 61-190 (892)
230 KOG0414 Chromosome condensatio 93.8 0.83 1.8E-05 52.1 12.7 145 105-279 920-1065(1251)
231 COG5116 RPN2 26S proteasome re 93.8 4 8.6E-05 43.0 16.4 152 211-385 520-675 (926)
232 PF11707 Npa1: Ribosome 60S bi 93.6 5.4 0.00012 40.6 17.5 163 251-413 58-249 (330)
233 PF05918 API5: Apoptosis inhib 93.5 2.2 4.8E-05 45.8 14.9 120 180-317 37-159 (556)
234 KOG2715 Uncharacterized conser 93.1 0.67 1.5E-05 39.9 8.2 101 544-644 17-121 (210)
235 KOG0414 Chromosome condensatio 93.0 0.95 2.1E-05 51.7 11.6 140 250-401 920-1064(1251)
236 PF12719 Cnd3: Nuclear condens 93.0 2.3 4.9E-05 42.7 13.6 167 207-382 26-207 (298)
237 PF14668 RICTOR_V: Rapamycin-i 92.9 0.63 1.4E-05 34.8 7.0 67 80-157 4-70 (73)
238 KOG2956 CLIP-associating prote 92.8 11 0.00023 39.1 17.4 174 180-363 302-478 (516)
239 KOG2956 CLIP-associating prote 92.8 5.6 0.00012 41.0 15.5 171 131-319 302-476 (516)
240 KOG2137 Protein kinase [Signal 92.8 1.8 3.9E-05 47.0 12.8 142 330-507 386-528 (700)
241 COG5218 YCG1 Chromosome conden 92.7 12 0.00026 39.8 18.0 119 229-355 73-192 (885)
242 KOG4464 Signaling protein RIC- 92.7 5.5 0.00012 40.2 15.0 173 55-237 43-232 (532)
243 KOG2999 Regulator of Rac1, req 92.7 2.8 6E-05 43.9 13.4 159 106-281 85-245 (713)
244 PF04063 DUF383: Domain of unk 92.7 1.6 3.4E-05 40.2 10.8 107 131-240 10-136 (192)
245 KOG1778 CREB binding protein/P 92.4 0.13 2.8E-06 50.8 3.7 141 548-689 27-170 (319)
246 PF05918 API5: Apoptosis inhib 92.3 1.3 2.9E-05 47.4 11.2 130 253-398 27-159 (556)
247 COG5116 RPN2 26S proteasome re 92.2 0.84 1.8E-05 47.7 9.2 52 448-502 623-677 (926)
248 PF11864 DUF3384: Domain of un 92.1 10 0.00022 40.8 18.0 277 57-362 24-330 (464)
249 PF08506 Cse1: Cse1; InterPro 92.0 9.5 0.00021 39.4 16.8 212 176-396 107-370 (370)
250 KOG2032 Uncharacterized conser 91.9 18 0.00039 37.8 19.3 138 131-277 273-414 (533)
251 KOG3665 ZYG-1-like serine/thre 91.0 14 0.0003 41.8 18.0 175 314-498 494-678 (699)
252 COG5098 Chromosome condensatio 90.9 4.2 9.1E-05 43.9 12.8 207 180-412 911-1124(1128)
253 COG5201 SKP1 SCF ubiquitin lig 90.7 3 6.5E-05 34.3 9.0 90 553-645 8-122 (158)
254 PF06371 Drf_GBD: Diaphanous G 90.6 1 2.2E-05 41.7 7.5 91 145-235 95-186 (187)
255 PF12530 DUF3730: Protein of u 90.5 17 0.00036 34.9 16.5 134 75-236 13-151 (234)
256 KOG1525 Sister chromatid cohes 90.5 26 0.00056 42.1 20.0 173 332-504 258-441 (1266)
257 KOG1820 Microtubule-associated 90.3 3.3 7.1E-05 46.9 12.2 193 55-278 247-443 (815)
258 KOG1788 Uncharacterized conser 90.3 8.9 0.00019 43.6 14.9 260 84-361 663-981 (2799)
259 KOG1820 Microtubule-associated 90.1 8.8 0.00019 43.7 15.3 182 210-400 256-442 (815)
260 PF04063 DUF383: Domain of unk 89.1 1.8 4E-05 39.7 7.7 103 55-169 50-159 (192)
261 COG5209 RCD1 Uncharacterized p 89.0 4.6 0.0001 37.1 9.9 150 80-245 117-276 (315)
262 smart00638 LPD_N Lipoprotein N 88.8 44 0.00095 37.3 20.1 162 158-353 394-569 (574)
263 PF01347 Vitellogenin_N: Lipop 88.1 18 0.00039 40.8 16.7 197 158-395 396-616 (618)
264 PF01347 Vitellogenin_N: Lipop 87.7 13 0.00029 41.9 15.2 201 105-356 396-616 (618)
265 PF10363 DUF2435: Protein of u 87.7 1.5 3.2E-05 34.7 5.4 71 210-282 6-76 (92)
266 PF01466 Skp1: Skp1 family, di 87.6 1.4 3.1E-05 33.7 5.2 50 613-662 11-63 (78)
267 PF13251 DUF4042: Domain of un 87.5 10 0.00022 34.5 11.3 135 223-361 2-173 (182)
268 PF11864 DUF3384: Domain of un 87.2 40 0.00086 36.3 17.7 70 447-516 251-330 (464)
269 PF11865 DUF3385: Domain of un 87.1 4 8.6E-05 36.4 8.4 77 439-515 79-156 (160)
270 KOG2933 Uncharacterized conser 87.0 6.9 0.00015 38.1 10.2 140 293-474 90-233 (334)
271 KOG2137 Protein kinase [Signal 86.9 17 0.00037 39.9 14.2 135 204-346 386-521 (700)
272 COG5209 RCD1 Uncharacterized p 86.9 13 0.00028 34.4 11.3 148 310-483 119-276 (315)
273 PF08167 RIX1: rRNA processing 86.8 3.7 8E-05 36.9 8.1 116 333-476 25-144 (165)
274 PF06371 Drf_GBD: Diaphanous G 86.6 4.7 0.0001 37.1 9.2 81 281-361 97-186 (187)
275 KOG3665 ZYG-1-like serine/thre 86.2 5.5 0.00012 44.9 10.8 155 139-301 494-677 (699)
276 KOG2611 Neurochondrin/leucine- 86.2 38 0.00082 35.3 15.3 128 131-261 26-164 (698)
277 COG5218 YCG1 Chromosome conden 86.0 6.1 0.00013 41.9 10.0 101 206-314 90-193 (885)
278 PF12031 DUF3518: Domain of un 85.2 0.75 1.6E-05 42.9 2.9 91 387-503 139-232 (257)
279 PF12530 DUF3730: Protein of u 85.1 37 0.0008 32.6 17.2 124 180-319 16-150 (234)
280 KOG1949 Uncharacterized conser 84.6 16 0.00034 39.9 12.4 143 294-473 177-329 (1005)
281 PF11707 Npa1: Ribosome 60S bi 84.6 50 0.0011 33.7 18.7 156 209-364 58-239 (330)
282 PF11865 DUF3385: Domain of un 84.1 10 0.00022 33.9 9.5 146 59-235 8-156 (160)
283 KOG1992 Nuclear export recepto 84.0 56 0.0012 36.7 16.3 191 79-278 309-527 (960)
284 COG5098 Chromosome condensatio 83.6 32 0.00069 37.6 14.0 131 261-403 908-1039(1128)
285 PF13251 DUF4042: Domain of un 83.6 25 0.00054 32.0 11.8 114 209-322 41-176 (182)
286 PF10363 DUF2435: Protein of u 83.0 2.5 5.4E-05 33.5 4.6 72 447-519 4-75 (92)
287 KOG2933 Uncharacterized conser 82.9 9.8 0.00021 37.2 9.3 140 209-361 90-233 (334)
288 KOG2611 Neurochondrin/leucine- 82.7 66 0.0014 33.7 17.6 189 79-277 27-224 (698)
289 smart00638 LPD_N Lipoprotein N 82.4 30 0.00065 38.6 14.7 143 251-400 313-474 (574)
290 PF08324 PUL: PUL domain; Int 82.2 10 0.00022 37.4 9.9 148 131-283 78-236 (268)
291 PF12031 DUF3518: Domain of un 81.8 2 4.4E-05 40.1 4.2 83 131-220 139-229 (257)
292 KOG1949 Uncharacterized conser 81.1 25 0.00055 38.4 12.3 185 210-398 177-367 (1005)
293 PRK09169 hypothetical protein; 81.0 1.8E+02 0.0038 37.4 24.5 15 346-360 413-427 (2316)
294 PLN03076 ARF guanine nucleotid 79.6 1.5E+02 0.0032 37.7 19.8 255 131-400 1152-1488(1780)
295 PF14500 MMS19_N: Dos2-interac 78.8 68 0.0015 31.4 14.3 220 253-477 3-239 (262)
296 PF08167 RIX1: rRNA processing 78.5 18 0.0004 32.4 9.3 112 208-323 26-146 (165)
297 KOG1822 Uncharacterized conser 78.5 1.6E+02 0.0034 36.8 18.6 189 122-322 790-990 (2067)
298 PF08324 PUL: PUL domain; Int 78.3 19 0.00041 35.5 10.3 153 79-241 79-236 (268)
299 PF12231 Rif1_N: Rap1-interact 76.3 1E+02 0.0022 32.1 20.0 225 126-362 56-303 (372)
300 PF08506 Cse1: Cse1; InterPro 76.0 1E+02 0.0022 31.9 20.4 260 82-357 59-370 (370)
301 COG5656 SXM1 Importin, protein 75.1 1.5E+02 0.0031 33.2 18.0 281 103-400 407-710 (970)
302 KOG0413 Uncharacterized conser 74.2 15 0.00032 41.6 8.5 128 127-278 942-1073(1529)
303 PF06685 DUF1186: Protein of u 73.6 52 0.0011 31.7 11.2 126 156-295 72-201 (249)
304 KOG1992 Nuclear export recepto 73.3 1.7E+02 0.0037 33.2 17.3 79 285-364 355-437 (960)
305 KOG1525 Sister chromatid cohes 72.9 1.1E+02 0.0025 36.9 15.9 147 248-401 258-405 (1266)
306 PF14726 RTTN_N: Rotatin, an a 72.2 32 0.00069 27.6 7.9 66 331-396 28-95 (98)
307 KOG2676 Uncharacterized conser 71.9 6.2 0.00013 39.0 4.6 63 185-247 376-440 (478)
308 KOG2011 Sister chromatid cohes 71.6 2.2E+02 0.0047 33.7 18.2 140 254-399 292-433 (1048)
309 PF11822 DUF3342: Domain of un 70.7 2.3 4.9E-05 41.8 1.5 56 644-699 71-127 (317)
310 PF12830 Nipped-B_C: Sister ch 70.2 43 0.00094 30.8 9.7 71 208-283 9-79 (187)
311 KOG3840 Uncharaterized conserv 70.1 4.7 0.0001 38.7 3.3 83 549-631 97-185 (438)
312 PF10521 DUF2454: Protein of u 69.1 48 0.001 32.9 10.5 70 208-277 120-202 (282)
313 KOG0301 Phospholipase A2-activ 68.0 1.3E+02 0.0029 33.0 13.6 171 180-356 559-740 (745)
314 cd03568 VHS_STAM VHS domain fa 67.1 22 0.00047 31.1 6.6 68 334-401 38-110 (144)
315 PF13001 Ecm29: Proteasome sta 65.8 1.4E+02 0.0029 32.6 14.0 170 180-364 252-445 (501)
316 PF14225 MOR2-PAG1_C: Cell mor 65.8 1.4E+02 0.003 29.2 15.9 165 336-513 67-251 (262)
317 PF08216 CTNNBL: Catenin-beta- 65.1 7 0.00015 31.7 2.9 42 465-506 65-106 (108)
318 PF01603 B56: Protein phosphat 65.1 1.2E+02 0.0025 32.1 12.9 230 103-363 132-371 (409)
319 KOG1848 Uncharacterized conser 64.9 1.3E+02 0.0027 36.3 13.5 92 180-276 857-956 (1610)
320 cd03561 VHS VHS domain family; 64.3 67 0.0015 27.5 9.2 73 292-364 38-114 (133)
321 PF14500 MMS19_N: Dos2-interac 63.9 1.5E+02 0.0033 29.0 17.3 210 131-364 14-239 (262)
322 PF12231 Rif1_N: Rap1-interact 63.1 1.9E+02 0.0042 30.0 21.4 292 53-364 31-354 (372)
323 PF10521 DUF2454: Protein of u 63.0 75 0.0016 31.5 10.6 70 250-319 120-202 (282)
324 KOG0301 Phospholipase A2-activ 62.9 2.1E+02 0.0046 31.5 13.9 160 218-382 555-726 (745)
325 KOG2152 Sister chromatid cohes 62.6 2.6E+02 0.0057 31.3 20.9 62 53-118 328-389 (865)
326 cd03568 VHS_STAM VHS domain fa 62.5 30 0.00065 30.2 6.7 71 207-277 37-109 (144)
327 KOG0891 DNA-dependent protein 62.3 1.2E+02 0.0027 39.3 14.0 196 205-402 563-764 (2341)
328 KOG0413 Uncharacterized conser 62.0 37 0.00081 38.6 8.5 126 263-401 945-1073(1529)
329 PF12074 DUF3554: Domain of un 61.3 1.6E+02 0.0035 30.1 13.0 79 220-302 175-255 (339)
330 cd03561 VHS VHS domain family; 60.8 39 0.00084 29.0 7.1 72 207-278 37-112 (133)
331 PF08389 Xpo1: Exportin 1-like 60.4 63 0.0014 28.0 8.8 141 348-511 3-148 (148)
332 cd03569 VHS_Hrs_Vps27p VHS dom 59.7 33 0.00072 29.8 6.5 71 207-277 41-113 (142)
333 PLN03076 ARF guanine nucleotid 59.4 4.9E+02 0.011 33.4 19.2 136 218-362 1148-1299(1780)
334 KOG0891 DNA-dependent protein 58.8 2.9E+02 0.0062 36.2 16.2 157 245-403 561-721 (2341)
335 cd03567 VHS_GGA VHS domain fam 58.7 42 0.00091 29.0 6.8 68 334-401 39-116 (139)
336 KOG2011 Sister chromatid cohes 58.6 1E+02 0.0022 36.1 11.5 134 343-512 297-431 (1048)
337 cd03569 VHS_Hrs_Vps27p VHS dom 58.5 38 0.00083 29.4 6.6 69 333-401 41-114 (142)
338 PF12074 DUF3554: Domain of un 56.8 1.3E+02 0.0029 30.7 11.5 79 261-343 174-254 (339)
339 KOG4390 Voltage-gated A-type K 56.5 88 0.0019 31.5 9.2 86 550-639 42-133 (632)
340 PF14225 MOR2-PAG1_C: Cell mor 55.7 2.1E+02 0.0045 28.0 16.9 161 180-360 77-252 (262)
341 cd03567 VHS_GGA VHS domain fam 54.2 52 0.0011 28.5 6.7 71 207-277 38-115 (139)
342 PF06685 DUF1186: Protein of u 53.9 2.2E+02 0.0047 27.6 13.6 88 247-348 71-169 (249)
343 PF01365 RYDR_ITPR: RIH domain 53.8 28 0.00061 32.7 5.5 126 148-278 34-169 (207)
344 PF14726 RTTN_N: Rotatin, an a 53.7 1.1E+02 0.0024 24.6 7.9 67 206-273 29-95 (98)
345 PF00651 BTB: BTB/POZ domain; 53.4 24 0.00051 28.8 4.5 31 646-676 80-110 (111)
346 PF06012 DUF908: Domain of Unk 53.0 2.2E+02 0.0048 29.0 12.2 66 131-201 237-304 (329)
347 PF04869 Uso1_p115_head: Uso1 52.3 2.6E+02 0.0057 28.1 13.6 138 262-399 51-229 (312)
348 PLN03205 ATR interacting prote 52.1 2.5E+02 0.0053 28.8 11.5 144 344-496 383-544 (652)
349 KOG2723 Uncharacterized conser 49.8 42 0.00091 31.5 5.7 93 546-639 6-104 (221)
350 smart00288 VHS Domain present 49.3 71 0.0015 27.4 6.8 71 106-194 39-111 (133)
351 cd08050 TAF6 TATA Binding Prot 48.4 1.6E+02 0.0034 30.2 10.3 107 292-399 211-338 (343)
352 KOG4231 Intracellular membrane 48.3 17 0.00036 38.0 3.1 73 292-364 329-401 (763)
353 KOG2676 Uncharacterized conser 48.1 26 0.00057 34.9 4.3 63 226-288 375-439 (478)
354 PF07707 BACK: BTB And C-termi 47.7 26 0.00057 28.1 3.8 60 619-678 2-75 (103)
355 KOG1822 Uncharacterized conser 47.3 7.1E+02 0.015 31.7 17.6 179 178-364 797-990 (2067)
356 PF08216 CTNNBL: Catenin-beta- 47.3 24 0.00051 28.8 3.2 38 81-118 64-101 (108)
357 PF13001 Ecm29: Proteasome sta 47.0 53 0.0011 35.7 7.0 171 218-401 248-443 (501)
358 smart00288 VHS Domain present 46.8 77 0.0017 27.2 6.6 67 334-400 38-110 (133)
359 KOG2549 Transcription initiati 46.6 2.7E+02 0.0058 30.1 11.4 117 158-276 240-368 (576)
360 PF10274 ParcG: Parkin co-regu 46.5 2.3E+02 0.005 25.8 10.3 73 292-364 39-111 (183)
361 PF01365 RYDR_ITPR: RIH domain 45.8 51 0.0011 30.9 5.9 95 221-320 75-169 (207)
362 PF12830 Nipped-B_C: Sister ch 45.8 2.4E+02 0.0052 25.8 12.9 143 159-320 10-167 (187)
363 PF12463 DUF3689: Protein of u 43.9 3.5E+02 0.0075 27.1 16.6 139 97-241 2-178 (303)
364 KOG2038 CAATT-binding transcri 43.6 2.8E+02 0.0062 31.2 11.3 79 444-527 302-381 (988)
365 KOG2005 26S proteasome regulat 43.1 2.7E+02 0.0058 30.8 10.9 233 251-513 50-293 (878)
366 smart00567 EZ_HEAT E-Z type HE 42.0 48 0.0011 19.4 3.4 28 131-168 2-29 (30)
367 PF04388 Hamartin: Hamartin pr 42.0 2.5E+02 0.0053 31.9 11.3 59 304-362 81-140 (668)
368 PF01603 B56: Protein phosphat 41.0 4.6E+02 0.01 27.7 17.1 211 178-398 103-323 (409)
369 cd08050 TAF6 TATA Binding Prot 40.9 1E+02 0.0022 31.7 7.5 86 105-195 211-298 (343)
370 PF09324 DUF1981: Domain of un 40.5 1.5E+02 0.0033 23.1 6.8 65 331-397 15-84 (86)
371 PF08389 Xpo1: Exportin 1-like 40.1 1.1E+02 0.0025 26.3 7.0 49 263-315 100-148 (148)
372 KOG0392 SNF2 family DNA-depend 40.0 6.3E+02 0.014 30.6 13.8 169 305-477 143-327 (1549)
373 PF11791 Aconitase_B_N: Aconit 39.3 63 0.0014 28.1 4.7 27 335-361 96-122 (154)
374 KOG1848 Uncharacterized conser 39.2 8.2E+02 0.018 30.1 15.8 100 131-235 857-957 (1610)
375 PF00790 VHS: VHS domain; Int 39.0 2.5E+02 0.0054 24.2 8.7 74 105-194 43-118 (140)
376 PF03130 HEAT_PBS: PBS lyase H 37.9 26 0.00057 20.2 1.6 26 132-167 1-26 (27)
377 COG5537 IRR1 Cohesin [Cell div 37.7 3.7E+02 0.008 29.4 10.8 141 338-514 280-420 (740)
378 PF00790 VHS: VHS domain; Int 36.6 1.1E+02 0.0023 26.6 6.0 67 334-400 43-117 (140)
379 cd03572 ENTH_epsin_related ENT 36.4 1.6E+02 0.0035 24.8 6.7 40 105-156 39-80 (122)
380 KOG2075 Topoisomerase TOP1-int 36.3 41 0.00088 35.1 3.7 44 645-691 185-228 (521)
381 PF10274 ParcG: Parkin co-regu 36.2 3.4E+02 0.0074 24.8 10.2 76 250-325 39-114 (183)
382 PF12765 Cohesin_HEAT: HEAT re 36.2 29 0.00063 22.7 1.8 22 374-395 20-41 (42)
383 KOG2038 CAATT-binding transcri 34.4 7.4E+02 0.016 28.2 17.1 88 180-277 319-408 (988)
384 PF12463 DUF3689: Protein of u 34.1 4.9E+02 0.011 26.0 14.9 103 222-324 47-177 (303)
385 COG5537 IRR1 Cohesin [Cell div 33.5 4.3E+02 0.0094 29.0 10.5 140 254-400 280-421 (740)
386 KOG2149 Uncharacterized conser 32.2 3.3E+02 0.0072 28.1 9.2 114 250-364 59-172 (393)
387 PF14666 RICTOR_M: Rapamycin-i 32.1 4.5E+02 0.0098 25.0 13.3 134 131-277 79-224 (226)
388 PF06012 DUF908: Domain of Unk 31.9 1.9E+02 0.004 29.5 7.8 63 79-150 238-303 (329)
389 PF12726 SEN1_N: SEN1 N termin 31.5 2.9E+02 0.0062 31.9 10.1 87 180-276 496-583 (727)
390 PF12726 SEN1_N: SEN1 N termin 31.5 5.3E+02 0.012 29.8 12.2 142 210-363 444-586 (727)
391 PHA02713 hypothetical protein; 31.4 59 0.0013 36.0 4.4 33 644-676 90-122 (557)
392 KOG1791 Uncharacterized conser 30.6 1.2E+03 0.025 29.3 14.9 196 94-303 1429-1640(1758)
393 KOG4231 Intracellular membrane 29.8 1.3E+02 0.0028 31.8 6.0 69 448-516 330-399 (763)
394 PF04388 Hamartin: Hamartin pr 29.5 6.1E+02 0.013 28.9 11.9 59 262-320 81-140 (668)
395 PHA03098 kelch-like protein; P 29.5 1.1E+02 0.0024 33.7 6.2 32 645-676 73-104 (534)
396 PRK09169 hypothetical protein; 29.1 1.5E+03 0.032 29.9 27.8 22 131-152 289-310 (2316)
397 PF14631 FancD2: Fanconi anaem 27.9 1.3E+03 0.029 29.1 21.4 101 257-364 443-544 (1426)
398 PF14663 RasGEF_N_2: Rapamycin 27.8 1.5E+02 0.0033 24.6 5.2 39 105-155 9-47 (115)
399 PF04821 TIMELESS: Timeless pr 27.2 6E+02 0.013 24.9 13.2 183 250-477 14-210 (266)
400 PF04869 Uso1_p115_head: Uso1 26.6 6.8E+02 0.015 25.3 16.0 143 220-362 51-231 (312)
401 KOG2229 Protein required for a 26.1 3.1E+02 0.0067 29.3 7.9 139 250-399 17-164 (616)
402 PF14663 RasGEF_N_2: Rapamycin 25.6 94 0.002 25.9 3.6 39 373-411 9-47 (115)
403 cd03565 VHS_Tom1 VHS domain fa 25.5 3.4E+02 0.0074 23.5 7.2 68 334-401 39-115 (141)
404 KOG0392 SNF2 family DNA-depend 25.2 2.2E+02 0.0047 34.2 7.3 107 250-361 817-924 (1549)
405 KOG4524 Uncharacterized conser 24.5 2.1E+02 0.0044 33.2 6.8 95 208-302 804-900 (1014)
406 KOG2199 Signal transducing ada 24.4 3.4E+02 0.0074 27.9 7.6 69 333-401 45-118 (462)
407 PF09758 FPL: Uncharacterised 24.3 2.2E+02 0.0048 24.9 5.6 124 94-235 16-148 (149)
408 KOG0889 Histone acetyltransfer 24.2 1.7E+03 0.037 30.8 15.1 57 444-500 1275-1332(3550)
409 KOG1410 Nuclear transport rece 23.6 1.1E+03 0.023 26.5 17.4 249 251-516 7-284 (1082)
410 cd03572 ENTH_epsin_related ENT 23.5 4.5E+02 0.0098 22.2 8.7 49 270-323 22-70 (122)
411 PF08713 DNA_alkylation: DNA a 23.2 6E+02 0.013 23.5 10.4 139 108-290 55-196 (213)
412 PF04499 SAPS: SIT4 phosphatas 23.2 7.8E+02 0.017 26.6 10.8 74 328-401 57-148 (475)
413 cd00197 VHS_ENTH_ANTH VHS, ENT 23.1 3.5E+02 0.0075 22.3 6.7 74 105-192 38-113 (115)
414 PF09324 DUF1981: Domain of un 22.7 2E+02 0.0043 22.4 4.7 66 154-231 14-83 (86)
415 PF12054 DUF3535: Domain of un 22.6 9.6E+02 0.021 25.6 15.6 76 305-384 101-180 (441)
416 PF14666 RICTOR_M: Rapamycin-i 21.9 7E+02 0.015 23.8 11.8 140 77-235 78-224 (226)
417 KOG2149 Uncharacterized conser 21.5 8E+02 0.017 25.5 9.7 113 209-322 60-172 (393)
418 KOG3788 Predicted divalent cat 21.5 3.5E+02 0.0076 28.0 7.1 105 568-673 320-429 (441)
419 PF04499 SAPS: SIT4 phosphatas 20.9 3.9E+02 0.0084 28.9 8.0 42 148-196 53-94 (475)
420 PF11791 Aconitase_B_N: Aconit 20.5 1.5E+02 0.0033 25.9 3.9 27 293-319 96-122 (154)
421 PF07571 DUF1546: Protein of u 20.4 2.1E+02 0.0044 22.7 4.4 64 123-192 12-76 (92)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=356.11 Aligned_cols=447 Identities=21% Similarity=0.213 Sum_probs=366.0
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
...+|.++.+|.+. ++..+..|+++|.+++.+ ++.+..+++.|+||.|+++|++++. ..+|+
T Consensus 188 aGaVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE 250 (2102)
T PLN03200 188 AGGVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRA 250 (2102)
T ss_pred cCCHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHH
Confidence 34677788887653 677899999999888874 7789999999999999999976433 18999
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCc-chhhhHHHHHHHHHHHHHhccCcc-----------c--
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I-- 199 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~L~~~~~~-----------~-- 199 (715)
.|+|+|.+|+ ++++++..+++.|+++.|++++..+..... ......+++.++|+|.|+|.+... .
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd 330 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRS 330 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccch
Confidence 9999999999 889999999999999999999986442110 001126788899999998863211 0
Q ss_pred ------------------------------------------------------------------hhHHHhcCCcHHHH
Q 005088 200 ------------------------------------------------------------------KTRVRMEGGIPPLV 213 (715)
Q Consensus 200 ------------------------------------------------------------------~~~~~~~g~i~~L~ 213 (715)
+..+.+.++++.|+
T Consensus 331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV 410 (2102)
T PLN03200 331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV 410 (2102)
T ss_pred HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh
Confidence 00111234445555
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l 293 (715)
.++...+.+++..++++|++|+.++++.+..+.+.|+++.|+++|.+++..++..++++|++++..+++.+..+++.|++
T Consensus 411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 411 GLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 56666667889999999999998888999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---------
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--------- 364 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--------- 364 (715)
+.|+++|.+++.+++++|+|+|+|++.++++.+..+.+.|+++.|+++|+++++.+++.|+++|.+++...
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv 570 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLT 570 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 99999999999999999999999999866566666668899999999999999999999999999996321
Q ss_pred --------------------------H-----HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC-CchhhHHHhh
Q 005088 365 --------------------------T-----AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRV 412 (715)
Q Consensus 365 --------------------------~-----~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~ 412 (715)
. ......|+++.|++++++++..+++.|+++|.+++.. ++.+..++..
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 0 0012468999999999999999999999999999754 5667889999
Q ss_pred ccccccccchhhhhhh--h---hHHHHHH-----HHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchh
Q 005088 413 GGVQKLQDGEFIVQAT--K---DCVAKTL-----KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI 482 (715)
Q Consensus 413 ~~i~~L~~~~~~~~~~--~---~~~~~~~-----~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 482 (715)
|++++++.....-... + +++.... .+.......|+++.|+++|.+.+.+++..|+.+|.+++..++.+..
T Consensus 651 gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~e 730 (2102)
T PLN03200 651 EIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730 (2102)
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHH
Confidence 9999998755432111 1 1111111 2223346789999999999999999999999999999999999988
Q ss_pred hhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 483 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 483 ~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+...|+++.|+.++.+++++.|+.|+++|.+|++..+
T Consensus 731 i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 8889999999999999999999999999999998655
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-37 Score=309.93 Aligned_cols=399 Identities=20% Similarity=0.293 Sum_probs=336.7
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHH
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (715)
....+.++..+.+. ++..+..+...++.+.+. ......++..|++|.++..|+..+. +.++
T Consensus 65 ~~~~~~~~~~~~S~------~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~-----------~~lq 127 (514)
T KOG0166|consen 65 ASNLELMLAALYSD------DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN-----------PTLQ 127 (514)
T ss_pred hhhhHHHHHHHhCC------CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC-----------hhHH
Confidence 33355566666655 666688899988888763 2344556666999999999985553 2899
Q ss_pred hhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
..|+|+|.|++ ++.+....+++.|++|.++.++.+++. ++++.|+|+|+|++.+++..|..+.+.|+++.|
T Consensus 128 ~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 128 FEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred HHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 99999999999 888999999999999999999999887 999999999999999999999999999999999
Q ss_pred HHhhccCCH-HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcC
Q 005088 213 VELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (715)
Q Consensus 213 ~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g 291 (715)
+.++..++. .+.+.+.|+|.|||.+....-..-.-..+++.|..++.+.|++|...|+|+|++|+.+..+..+.+++.|
T Consensus 200 l~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 200 LRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred HHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 999987665 7889999999999986532222222235799999999999999999999999999988889999999999
Q ss_pred ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---HHH
Q 005088 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---TAG 367 (715)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---~~~ 367 (715)
+++.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++.|..++.. +...+++.|+|+|+|++.+. .+.
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984 66669999999999999987 788
Q ss_pred HHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC--CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhh
Q 005088 368 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 445 (715)
Q Consensus 368 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (715)
+++.|.+|.|+.+|+..+..+|+.|+|++.|++.. ++....+++.|
T Consensus 360 Vida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g-------------------------------- 407 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG-------------------------------- 407 (514)
T ss_pred HHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC--------------------------------
Confidence 89999999999999999999999999999999644 44445566666
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc---------cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHH
Q 005088 446 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 512 (715)
Q Consensus 446 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---------~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~ 512 (715)
+++.|..+|...+..+...++-+|.++-.-.+ ....+.+.||+..+..|-.+.+.++-..|-..+-
T Consensus 408 -iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 408 -IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred -CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 45566677877788888888888888733221 3345677899999999999999888777755443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=305.81 Aligned_cols=320 Identities=24% Similarity=0.351 Sum_probs=294.8
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
..+|.+|+.|... .++.++.+|+|+|.|+++ +++..+.++++|++|.++.++.+++. +|+++
T Consensus 109 G~v~~lV~~l~~~-----~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQ 171 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-----DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQ 171 (514)
T ss_pred CcHHHHHHHHccC-----CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHH
Confidence 5677777777644 357789999999999999 57888899999999999999999998 99999
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
|+|+|+|++ +++.+|+.++..|++++|+.++...... .+.+.+.|+|.|+|.+..+....-....++|.|..
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999987753 79999999999999876544444445678999999
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
++.+.|+++...|||+|++|+.+.++....+++.|+++.|+.+|.+.+..++..|+++++|++.+++...+.++..|+++
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~ 324 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP 324 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHH
Q 005088 295 PVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIA 369 (715)
Q Consensus 295 ~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~ 369 (715)
.|..++. +....++++|+|+++|++.++.+..+.+++.|++|.|+.+|+..+..+|+.|+|+++|++... -.+++
T Consensus 325 ~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 325 VLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 9999999 555669999999999999999999999999999999999999999999999999999999888 78899
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 370 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
+.|++++++.+|...+..+...++.+|.|+-
T Consensus 405 ~~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 9999999999999899999999999999985
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-36 Score=280.82 Aligned_cols=408 Identities=21% Similarity=0.285 Sum_probs=334.7
Q ss_pred HhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc--ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccch
Q 005088 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (715)
Q Consensus 53 ~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~ 130 (715)
+...+..|.+...|.+. |.+.+..|..-++.+.+ +......++++|++|.+++++.....+
T Consensus 67 qq~~~elp~lt~~l~Sd------Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~----------- 129 (526)
T COG5064 67 QQFYSELPQLTQQLFSD------DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD----------- 129 (526)
T ss_pred HHhhhhhHHHHHHHhhh------HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-----------
Confidence 34455667777766654 77889999999999876 456678899999999999999654442
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
-++..|+|+|.|++ +.....+.+++.|++|.++++|.+... ++++.++|+|+|++.+++.+|..+...|++
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~gal 201 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGAL 201 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCch
Confidence 78889999999999 666667778899999999999999876 999999999999999999999999999999
Q ss_pred HHHHHhhccCCH--HHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 210 PPLVELLEFTDT--KVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 210 ~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
.+++.++.++.. .+.+++.|+|.|||.+.. ..-...+ ...+|.|.+++.+.|+++...|+|+|+.|+.+..+..+.
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHH
Confidence 999999987654 788999999999998642 2222222 347999999999999999999999999999988888999
Q ss_pred HHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--
Q 005088 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-- 364 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-- 364 (715)
+++.|..+.|+.+|.+++..++..|++.++|+..+++.....++..|+++.+..+|.++...+|+.|||++.|++...
T Consensus 281 vld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred HHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHH
Q 005088 365 -TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 443 (715)
Q Consensus 365 -~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (715)
.+.+++.+.+|+|+.+|.+.+..+++.|||++.|.+..-.+++.+++ -+.
T Consensus 361 qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir-----------------------------yLv 411 (526)
T COG5064 361 QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR-----------------------------YLV 411 (526)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH-----------------------------HHH
Confidence 78899999999999999999999999999999999755333332211 112
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc-----------cchhh-hcCCcHHHHHHHhcCCCcchhhhhHHHH
Q 005088 444 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-----------QRTIF-IDGGGLELLLGLLGSTNPKQQLDGAVAL 511 (715)
Q Consensus 444 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-----------~~~~~-~~~~~i~~L~~ll~~~~~~~~~~aa~~L 511 (715)
..|++..|..+|...+..+-..++-++.|+....+ ....+ .+.||+..+..+-.+.|..+-..|-..+
T Consensus 412 ~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsII 491 (526)
T COG5064 412 SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSII 491 (526)
T ss_pred HccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHH
Confidence 34455666677776665555555666666533221 12233 4479999999999998888877776555
Q ss_pred HHhh
Q 005088 512 FKLA 515 (715)
Q Consensus 512 ~~L~ 515 (715)
-..-
T Consensus 492 e~fF 495 (526)
T COG5064 492 EKFF 495 (526)
T ss_pred HHHc
Confidence 4433
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.1e-35 Score=334.81 Aligned_cols=432 Identities=22% Similarity=0.243 Sum_probs=349.9
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChh-hHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
...+|.+++.+...- ..+..++..++.+|.+++.+.+ ....+++.|++|.|+.+|+++++ .++.
T Consensus 143 ~GaVp~Lv~lL~~gs---k~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~------------~lQ~ 207 (2102)
T PLN03200 143 EGVVPSLWDQLQPGN---KQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS------------DAQA 207 (2102)
T ss_pred cCChHHHHHHHhCCc---hhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCH------------HHHH
Confidence 445788888887652 2344466778899999999654 45677899999999999998776 9999
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
.|+++|.+++ ..++.+..+++.|++|.|+++|++.++. .+++.|+|+|.+++.++++.+..+.+.|+++.|+
T Consensus 208 eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~-------~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI 280 (2102)
T PLN03200 208 NAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV-------SVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280 (2102)
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh-------HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Confidence 9999999999 7788999999999999999999875442 8999999999999999999999999999999999
Q ss_pred HhhccCC---------HHHHHHHHHHHHHHhcCChh-----------h--------------------------------
Q 005088 214 ELLEFTD---------TKVQRAAAGALRTLAFKNDE-----------N-------------------------------- 241 (715)
Q Consensus 214 ~ll~~~~---------~~v~~~a~~~L~~L~~~~~~-----------~-------------------------------- 241 (715)
.++..++ ..+++.|.|+|.|+|.+... .
T Consensus 281 ~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~ 360 (2102)
T PLN03200 281 NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDP 360 (2102)
T ss_pred HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccc
Confidence 9997554 34589999999998863111 0
Q ss_pred ------------------------------------HHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 242 ------------------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 242 ------------------------------------~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
+..+.+.|+++.|+.++...+.+++..++++|++|+.++.+.++
T Consensus 361 ~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~ 440 (2102)
T PLN03200 361 TVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWE 440 (2102)
T ss_pred cccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 00112234455566666667788999999999999988889999
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI- 364 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~- 364 (715)
.+.+.|+++.|+++|.+++..+++.++++++|++.++++++..+.+.|++|.|+++|.++++.+++.|+|+|+|++.+.
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH
Confidence 9999999999999999999999999999999999888888999999999999999999999999999999999999766
Q ss_pred --HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchh--hHHHhhccccccccchhhhhhhhhHHHHHHHHH-
Q 005088 365 --TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV--ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL- 439 (715)
Q Consensus 365 --~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~- 439 (715)
+..+.+.|+++.|+++|+++++.++..|+++|.|++...++. +.++. .|.... ......+...+.++
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~-----LLlsdd---~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA-----LLLGDL---PESKVHVLDVLGHVL 592 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH-----HhcCCC---hhHHHHHHHHHHHHH
Confidence 555567899999999999999999999999999997654322 22221 111111 00111112222111
Q ss_pred ----------HHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC-ccchhhhcCCcHHHHHHHhcCCCcchhhhhH
Q 005088 440 ----------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGA 508 (715)
Q Consensus 440 ----------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa 508 (715)
......+.++.|++++.++++.++..|+++|.+++... +....+...|++++|+.++.+++.+++..|+
T Consensus 593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA 672 (2102)
T PLN03200 593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSA 672 (2102)
T ss_pred hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHH
Confidence 11124578999999999999999999999999997654 4566678899999999999999999999999
Q ss_pred HHHHHhhhh
Q 005088 509 VALFKLANK 517 (715)
Q Consensus 509 ~~L~~L~~~ 517 (715)
|+|.+|...
T Consensus 673 ~AL~nL~~~ 681 (2102)
T PLN03200 673 RALAALSRS 681 (2102)
T ss_pred HHHHHHHhC
Confidence 999999974
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5e-36 Score=276.89 Aligned_cols=324 Identities=21% Similarity=0.301 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHH
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (715)
....||++++++... +....+.+|+|+|.|+++. ....+.++++|++|.++++|.+++. +|+
T Consensus 112 daGvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~ 174 (526)
T COG5064 112 DAGVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVR 174 (526)
T ss_pred hccccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHH
Confidence 355788899988654 2334689999999999995 6666778899999999999999988 999
Q ss_pred hhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
+++.|+|+|++ +++.+|+.+.+.|++.+++.++.++... ..+.+.+.|.|+|||.+..+-...-.....+|.|
T Consensus 175 eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~------ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL 248 (526)
T COG5064 175 EQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH------ISMLRNATWTLSNLCRGKNPPPDWSNISQALPIL 248 (526)
T ss_pred HHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch------HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHH
Confidence 99999999999 8899999999999999999999865432 3889999999999997544333333334678999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005088 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (715)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 292 (715)
.+++.+.++++...|||++.+|+.+..+....+.+.|..+.|+.+|.+++..++..+++.++|+..+++...+.++..|+
T Consensus 249 ~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~ 328 (526)
T COG5064 249 AKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA 328 (526)
T ss_pred HHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc
Confidence 99999999999999999999999887888888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH------HH
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI------TA 366 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~------~~ 366 (715)
++.+..+|.++...++++|||+++|+..++.+..+.+++.+++|+|+++|.+-+..+++.|||++.|.+.+. -+
T Consensus 329 L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 329 LKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 67
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 367 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 367 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
++++.|++++|..+|.-.+..+-+.++.++.|+..
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 88999999999999988877787888888888753
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=261.53 Aligned_cols=388 Identities=27% Similarity=0.355 Sum_probs=336.4
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCC
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~ 158 (715)
.+..++-+++.+.... .+ -++....++.+.++++.++ .++..+..+++|++.+.+.+..++..++
T Consensus 63 lqrsaalafAeitek~-vr--~Vsres~epvl~llqs~d~------------~Iq~aa~~alGnlAVn~enk~liv~l~G 127 (550)
T KOG4224|consen 63 LQRSAALAFAEITEKG-VR--RVSRESNEPVLALLQSCDK------------CIQCAAGEALGNLAVNMENKGLIVSLLG 127 (550)
T ss_pred cchHHHHHHHHHHHHH-HH--HhhhhhhhHHHHHHhCcch------------hhhhhhhhhhccceeccCCceEEEeccC
Confidence 3455555555444310 11 1234567788889999888 9999999999999988888888888899
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (715)
+..|+.-+..+.. ++++.+++|++||+.. ..++..+...|++.++.++-++.+..++.++..+|.+++ +.
T Consensus 128 l~~Li~qmmtd~v--------evqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs 197 (550)
T KOG4224|consen 128 LDLLILQMMTDGV--------EVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HS 197 (550)
T ss_pred hHHHHHHhcCCCc--------EEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hh
Confidence 9988877776655 8999999999999974 678888899999999999999999999999999999999 47
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcC--ChHHHHhhhccCChHHHHHHHHHHH
Q 005088 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLG 316 (715)
Q Consensus 239 ~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g--~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (715)
.+++..++.+|++|.|+.++.+.+.++++.|+.+|+|++.. ...++.+.+.+ +++.|++++.+++++++-.|..+|+
T Consensus 198 ~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 198 RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999654 45667777777 9999999999999999999999999
Q ss_pred HHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCC-hhHHHHHH
Q 005088 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKN-GSLQHNAA 393 (715)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~ 393 (715)
|+++ +...+..+++.|.+|.++++++++.-......+.++.|++.+. ...+.+.|++.+|+++|..++ .+++..|.
T Consensus 277 nlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 277 NLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 9985 5667788999999999999999988888888999999999998 777889999999999997654 55999999
Q ss_pred HHHHhccC-CCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHh
Q 005088 394 FALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 472 (715)
Q Consensus 394 ~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 472 (715)
.+|+||+. +..+.+.+.++|+++ .+..++.+...++|.....++..
T Consensus 356 stLrnLAasse~n~~~i~esgAi~---------------------------------kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIP---------------------------------KLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchH---------------------------------HHHHHHhcCChhHHHHHHHHHHH
Confidence 99999976 677888888888655 46678889999999999999999
Q ss_pred hcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcccccccCC
Q 005088 473 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDA 526 (715)
Q Consensus 473 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~~~~~~~ 526 (715)
|+..++.+..+.+.|.++.|+.++.+.+.+++-.||.+|.||+++-+.+.++..
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviE 456 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIE 456 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998777666543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=255.44 Aligned_cols=386 Identities=22% Similarity=0.269 Sum_probs=340.8
Q ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHh
Q 005088 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (715)
++.++..+..+++|++-+-+.+..+++-+++..|+.-+..+.. +++..+..+++||+...+++..+..
T Consensus 98 d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v------------evqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 98 DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV------------EVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc------------EEEeeehhhhhhhhccccchhhhhh
Confidence 7788999999999999988888888898999988877777777 8999999999999966889999999
Q ss_pred cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHh
Q 005088 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (715)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (715)
.|++.++.++-++.+. .++.++..+|.++.. ..++++.++..|++|.|+.+++++++.++..++.++.+++
T Consensus 166 sGaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred ccchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 9999999996666554 899999999999985 7888999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHhCC--ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHH
Q 005088 236 FKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (715)
Q Consensus 236 ~~~~~~~~~~~~~g--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~ 313 (715)
. +...++.+.+.+ +++.|+.++.++++.++..|..+|+||+.. .+....+.+.|.+|.++++++++..........
T Consensus 237 V-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 237 V-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred h-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 6 677888888877 999999999999999999999999999766 456688899999999999999988777788889
Q ss_pred HHHHHhcCCcchhHHHhhcCChHHHHHHhCCCC-HHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHH
Q 005088 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQ 389 (715)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~ 389 (715)
++.|++ ..+-+...+.+.|++.+|+++|+.++ .+++-+|..+|+||+..+ ...+.+.|+++.++.++.+..-.+|
T Consensus 315 CIrnis-ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 315 CIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HHhhcc-cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 999996 46777788999999999999998854 559999999999999866 8899999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 005088 390 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 469 (715)
Q Consensus 390 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~a 469 (715)
.....++..|+-++..+..+.+.|.++ .|+++..+.+.+++-+|+.+
T Consensus 394 seisac~a~Lal~d~~k~~lld~gi~~---------------------------------iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 394 SEISACIAQLALNDNDKEALLDSGIIP---------------------------------ILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred HHHHHHHHHHHhccccHHHHhhcCCcc---------------------------------eeecccCccchhhcccHHHH
Confidence 999999999998888888888888554 55677788899999999999
Q ss_pred HHhhcCCCccchhhhcC-----CcH-HHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 470 LAHLCSPDDQRTIFIDG-----GGL-ELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 470 L~~l~~~~~~~~~~~~~-----~~i-~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
|.|++...++...+.+. +|+ ..|..++.+....++..+.|.+.+|..+.
T Consensus 441 L~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 441 LINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999988755444332 444 47889999999999999999999999864
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=6.1e-23 Score=219.51 Aligned_cols=378 Identities=19% Similarity=0.219 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCC
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~ 158 (715)
+...++..|.|++.++.....+++.|+++.|+.+|++.+. ++...++++|.+|+-..+++..+.+.|+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~------------ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE------------ELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 5567888999999999999999999999999999998877 9999999999999988889999999999
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (715)
++.|++++.+.+. +++..++++|.||+. ++..+..++..|++|.|+.++.++ ..+..++.+|.+++. +
T Consensus 333 V~kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-d 400 (708)
T PF05804_consen 333 VEKLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-D 400 (708)
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-C
Confidence 9999999998765 899999999999997 777899999999999999999864 456679999999996 6
Q ss_pred hhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHH
Q 005088 239 DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (715)
Q Consensus 239 ~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (715)
+..+..+...++++.+++++.+ +++.+...++..+.|++.. +.+.+.+.+.|+++.|+......... -....+.|
T Consensus 401 d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRN 476 (708)
T PF05804_consen 401 DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRN 476 (708)
T ss_pred HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHH
Confidence 7889999999999999997655 5677788889999999765 56678888889999999876543221 23469999
Q ss_pred HhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccC--ChhHHHH
Q 005088 318 FAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSK--NGSLQHN 391 (715)
Q Consensus 318 l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~--~~~v~~~ 391 (715)
++.+++..+..+. +.+..|+..+.. .+++..-.++++|+||+..+ ...+.+.+.+|.+.++|..+ +..+...
T Consensus 477 iS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 477 ISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred HHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 9887755555444 467778888766 57788999999999998776 55666779999999999543 5678889
Q ss_pred HHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh--hhhHHHHHHHH
Q 005088 392 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALA 469 (715)
Q Consensus 392 a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~a 469 (715)
++..++.++.++.....+.+.| +++.|+.+|+.. |.++..+.+.+
T Consensus 555 ~Vi~~gtla~d~~~A~lL~~sg---------------------------------li~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 555 VVILLGTLASDPECAPLLAKSG---------------------------------LIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred HHHHHHHHHCCHHHHHHHHhCC---------------------------------hHHHHHHHHHhhCchHHHHHHHHHH
Confidence 9999999998888877777766 455677777765 78999999999
Q ss_pred HHhhcCCCccchhhhcC-CcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 470 LAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 470 L~~l~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+.++...++.+..+.+. +.+..|+.++.++|+.+|..|-.+|--++...+
T Consensus 602 f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 602 FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 99999998888887664 666789999999999999999999988887653
No 10
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=234.69 Aligned_cols=160 Identities=18% Similarity=0.289 Sum_probs=147.9
Q ss_pred hHHHhcCCCcccEEEEec-CeeecchHHHHhhccHHHHHhhcCCCCCCC-CCceecCCCCHHHHHHHHHHHhcCCcccCH
Q 005088 538 GDQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVTL 615 (715)
Q Consensus 538 ~~~~~~~~~~~d~~~~~~-~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~ 615 (715)
...++.++.+|||++.++ |+.|+|||.||+++|+||++||+++|+|.. +.+|.|.++++++|+.+|+|+|||+ ++.
T Consensus 16 l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~ 93 (557)
T PHA02713 16 ISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISS 93 (557)
T ss_pred HHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCH
Confidence 367889999999999998 899999999999999999999999999864 7789999999999999999999997 689
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHH
Q 005088 616 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 695 (715)
Q Consensus 616 ~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 695 (715)
+++.+++.+|++|+++.|+..|+++|.++++++||+.++..+..+.+..|.+.|.+|+.+||.++.++++|.+|+.+
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~--- 170 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFE--- 170 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHH---
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999554
Q ss_pred HHHHHHH
Q 005088 696 EIHNYFA 702 (715)
Q Consensus 696 ~l~~~~~ 702 (715)
++.+++.
T Consensus 171 ~l~~lL~ 177 (557)
T PHA02713 171 ILFDIIS 177 (557)
T ss_pred HHHHHhc
Confidence 4444444
No 11
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=7e-24 Score=232.01 Aligned_cols=151 Identities=23% Similarity=0.423 Sum_probs=143.8
Q ss_pred cCCCcccEEEEe--cCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHHH
Q 005088 543 NNATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD 620 (715)
Q Consensus 543 ~~~~~~d~~~~~--~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ 620 (715)
.++.+||+++.+ +|+.|++||.||+++|+||++||.++|+ +..|.+++ ++++|+.+|+|+|||++.++.+++.+
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHH
Confidence 388999999998 9999999999999999999999999988 46799999 99999999999999999999999999
Q ss_pred HHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHH
Q 005088 621 LLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 697 (715)
Q Consensus 621 ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 697 (715)
++.+|++|+++.|+..|++++...++.+||+.++.+|..|++..|.+.|..||.+||.++.++++|.+|+.+.+..+
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI 157 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977665554
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=9.6e-24 Score=226.34 Aligned_cols=160 Identities=28% Similarity=0.437 Sum_probs=153.3
Q ss_pred hHHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 538 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 538 ~~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+.++..+.+||+++.++++.|++||.||++.|+||++||+++++|..+.+|.+.++++++++.+++|+||+++.++.++
T Consensus 27 l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~n 106 (571)
T KOG4441|consen 27 LNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDN 106 (571)
T ss_pred HHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHh
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHH
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 697 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 697 (715)
+.+++.+|++||++.+.+.|.++|...++++||..+..+|+.|++.+|.+.+..|+.+||.++..+++|..|+.+.+.++
T Consensus 107 Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~l 186 (571)
T KOG4441|consen 107 VQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGL 186 (571)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999955544443
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=99.90 E-value=7.7e-24 Score=225.56 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=137.6
Q ss_pred HHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceec--CCCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 540 QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 540 ~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+...+.+|||+..++ +.|+|||.||++.|+||++||+++|+|+.. .+.+ .++++++|+.+|+|+|||++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 15 ALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence 3455778999877665 699999999999999999999999999865 4554 38999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCC--chhhhch
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLI 690 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~ 690 (715)
+.+++.+|++|+++.+++.|+++|.+.++++||+.++.+|+.|++++|.+.+.+|+.+||.++.++ ++|..|+
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986 8898875
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=1.2e-20 Score=175.16 Aligned_cols=403 Identities=16% Similarity=0.159 Sum_probs=308.7
Q ss_pred cccchhcccchhhhccchhhhhhhhhhhccccCCCCCchhHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHh
Q 005088 12 PERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELA 91 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~ 91 (715)
+...+...-.++.++||+.|+....+++...+.+++...+. +...+..+...+.. ...+....|.+++
T Consensus 20 ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~~~qp~------i~~~~~~i~e~i~~------~~~E~s~ll~~l~ 87 (461)
T KOG4199|consen 20 EFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPV------INETVDKIKEHIGQ------KLEETTELLEQLA 87 (461)
T ss_pred HHhcCccccchHHHHHHHhccCcccccccccCCCCCCCCcc------HHHhHHHHHHHHHh------hhHHHHHHHHHHH
Confidence 33455555667889999999999999999977554433311 33333333333221 1223333344443
Q ss_pred c----ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHH
Q 005088 92 K----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLL 166 (715)
Q Consensus 92 ~----~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL 166 (715)
. +..+|....+.|..+.++.++..... .+..+..+++.+|..+. ..|+. ++..+...++.+|
T Consensus 88 d~ck~~~A~r~la~~~ga~~~~it~~~la~~---------~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL 154 (461)
T KOG4199|consen 88 DECKKSLAHRVLAGKNGAHDALITLLELAES---------PNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLL 154 (461)
T ss_pred HHHhhhHHHHHHhccCCCcchhhhHHHHhhC---------CchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHH
Confidence 2 23455555678999988877764322 12277888899999888 66665 5667899999999
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChh-----
Q 005088 167 KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDE----- 240 (715)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~----- 240 (715)
....++ .++......++..-|..++.+++.+++.+.++.+...+. .+...+.+..+++++.|..+++.
T Consensus 155 ~~~~~~------~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg 228 (461)
T KOG4199|consen 155 ALKVES------EEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFG 228 (461)
T ss_pred hcccch------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecc
Confidence 776543 288888999999999999999999999999999997664 44556888999999999975542
Q ss_pred ----hHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC-h---HHHHHH
Q 005088 241 ----NKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-S---ESQREA 311 (715)
Q Consensus 241 ----~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~---~~~~~a 311 (715)
....+...|++..|++.++-. ++++...++.+|..|+.. .+.++.+.+.|++..++.++.+.+ . ...+.+
T Consensus 229 ~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ 307 (461)
T KOG4199|consen 229 QAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC 307 (461)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence 244567778899999999875 789999999999999765 688899999999999999998743 3 345778
Q ss_pred HHHHHHHhcCCcchhHHHhhcCChHHHHHHhC--CCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhc--cC
Q 005088 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLD--SK 384 (715)
Q Consensus 312 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~--~~ 384 (715)
+..|..++ +++..+..+++.|+.+.++.++. .++|.+.+.++.+++-|+.+. ...+++.|+-...++.|+ ..
T Consensus 308 lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 308 LSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 88999996 67889999999999999999873 478999999999999999888 778889999999999994 45
Q ss_pred ChhHHHHHHHHHHhc-cCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHH
Q 005088 385 NGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQ 463 (715)
Q Consensus 385 ~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~ 463 (715)
...+|++||+.++|+ +++.+++..++..| ++.|+...+..++.+.
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~G----------------------------------iE~Li~~A~~~h~tce 432 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANG----------------------------------IEKLIRTAKANHETCE 432 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhcc----------------------------------HHHHHHHHHhcCccHH
Confidence 688999999999999 56777877777765 4567777788888888
Q ss_pred HHHHHHHHhhcCCCccch
Q 005088 464 RRVALALAHLCSPDDQRT 481 (715)
Q Consensus 464 ~~a~~aL~~l~~~~~~~~ 481 (715)
..|-.+|..|..+...++
T Consensus 433 ~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 433 AAAKAALRDLGCDVYLRE 450 (461)
T ss_pred HHHHHHHHhcCcchhhHH
Confidence 888889999976655444
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=7.2e-21 Score=203.70 Aligned_cols=355 Identities=20% Similarity=0.238 Sum_probs=292.4
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHH
Q 005088 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (715)
Q Consensus 61 ~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L 140 (715)
.+++.|.+.+.+. +.+....++..|.+++-..+++..+.+.|+++.|++++.+.+. +++..++++|
T Consensus 290 ~iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~------------~l~~~aLrlL 355 (708)
T PF05804_consen 290 GIVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE------------DLVNVALRLL 355 (708)
T ss_pred CCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH------------HHHHHHHHHH
Confidence 3444444444433 5678899999999999999999999999999999999998877 8999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cC
Q 005088 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FT 219 (715)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~ 219 (715)
.||+.+++.|..++..|++|.|+.+|.++ ..+..++.+|++++. +++.+..+...+++|.++.++- .+
T Consensus 356 ~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 356 FNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS 424 (708)
T ss_pred HHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC
Confidence 99999999999999999999999999864 555678999999997 6678889999999999999764 45
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhh
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 299 (715)
++.+...++..+.||+. ++.+.+.+.+.|+++.|++..-...+.+ .+..+.|++.+++.....+ .+.+..|+..
T Consensus 425 ~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f--~~~i~~L~~~ 498 (708)
T PF05804_consen 425 EEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELF--VDFIGDLAKI 498 (708)
T ss_pred CccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHH--HHHHHHHHHH
Confidence 66777788899999996 7888889999999999998765543322 4578999988875544433 2466777777
Q ss_pred hccC-ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHH--HHHHHhcCCh
Q 005088 300 LSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVI--TAGIAHNGGL 374 (715)
Q Consensus 300 l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l 374 (715)
+..+ +++...+++.+|+|+...+.+....+.+.+++|.|.+.|.. ..+++...++..++.++... ...+.+.|.+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli 578 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLI 578 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence 7654 58899999999999986655666666678999999999965 45678888999999999887 7777889999
Q ss_pred HHHHHhhcc--CChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH
Q 005088 375 VPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 452 (715)
Q Consensus 375 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 452 (715)
+.|+.++++ .+.++..+.++++..+..+++.+..+++.. ++...|+
T Consensus 579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~--------------------------------~~~~yli 626 (708)
T PF05804_consen 579 PTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET--------------------------------EIPAYLI 626 (708)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc--------------------------------chHHHHH
Confidence 999999954 568899999999999999988888776632 3567899
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCCc
Q 005088 453 YLMRVAEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 453 ~ll~~~~~~v~~~a~~aL~~l~~~~~ 478 (715)
.++++.++.++..|-.+|--++..++
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999876654
No 16
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=198.03 Aligned_cols=160 Identities=30% Similarity=0.506 Sum_probs=153.0
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCccc---CH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV---TL 615 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~ 615 (715)
.+++.+..++||++++++..|++||.||++||.||++|+.++|.|+.+..|++.+.+.++|+.+|+|+|||++.+ ..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 556778899999999999999999999999999999999999999999999999999999999999999999985 56
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHH
Q 005088 616 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 695 (715)
Q Consensus 616 ~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 695 (715)
+...+.+.+|++|+...|.....+++...+..+|+|.++..|..|+.++|.+.|..|+.+|..+++..+.|..|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHH
Q 005088 696 EIH 698 (715)
Q Consensus 696 ~l~ 698 (715)
+++
T Consensus 196 e~l 198 (620)
T KOG4350|consen 196 ELL 198 (620)
T ss_pred HHH
Confidence 876
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.85 E-value=1.1e-19 Score=196.34 Aligned_cols=355 Identities=19% Similarity=0.213 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCC
Q 005088 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGA 158 (715)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~ 158 (715)
+.+..+.|..++.+++.+..++..|++|.|+++|..++. .+.+.+..|-.+|.||. ..++....-.+..+
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~---------~~kear~~A~aALHNIVhSqPD~kr~RRE~kv 281 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDD---------EDKEARKRASAALHNIVHSQPDEKRGRREKKV 281 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCch---------hhHHHHHHHHHHHHHHhhcCcchhhhHHHHHH
Confidence 467788999999999999999999999999999987766 24589999999999999 66654433333333
Q ss_pred hHHHHHHHc----------cccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC---------
Q 005088 159 LSHLVNLLK----------RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--------- 219 (715)
Q Consensus 159 l~~L~~lL~----------~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--------- 219 (715)
+..|=++.. ...+....-....-+..|+.+|..+++ +++.|..+.+.|+++++..|+.-.
T Consensus 282 L~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn 360 (2195)
T KOG2122|consen 282 LHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETN 360 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence 333322221 111111111112444577888899887 888999999999999999987521
Q ss_pred ---CHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH-HHHHcCChH
Q 005088 220 ---DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQ 294 (715)
Q Consensus 220 ---~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~l~ 294 (715)
...+++.+..+|-||+.++..++..+.. .|+++.++..|.+..+++..-...+|.||+...+.+.+ .+.+.|-+.
T Consensus 361 d~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 361 DGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 2468999999999999999999888766 58999999999999999999999999999876665544 445678888
Q ss_pred HHHhhh-ccCChHHHHHHHHHHHHHhcCCcchhHHHhh-cCChHHHHHHhCC----CCHHHHHHHHHHHHHhHHHH----
Q 005088 295 PVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS----PDVQLREMSAFALGRLAQVI---- 364 (715)
Q Consensus 295 ~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~----~~~~v~~~a~~~L~~l~~~~---- 364 (715)
.|.... ....+...+..+.+||||+.+..+++..+.. .|.+..|+.+|.. ..-.+.+.|.++|.|.+...
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E 520 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE 520 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence 887764 5556678889999999999999999988877 6889999999965 45678999999999998876
Q ss_pred --HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc-cCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHH
Q 005088 365 --TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 441 (715)
Q Consensus 365 --~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~ 441 (715)
++.+.+.+++..|++.|++.+-.|..++|++|||| +++++..+.+++.|+
T Consensus 521 ~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gA--------------------------- 573 (2195)
T KOG2122|consen 521 DYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGA--------------------------- 573 (2195)
T ss_pred hHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhccc---------------------------
Confidence 78889999999999999999999999999999999 678888877777774
Q ss_pred HHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 005088 442 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 477 (715)
Q Consensus 442 ~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 477 (715)
++.|..++++.+..+-+.++.+|.||....
T Consensus 574 ------v~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 574 ------VPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ------HHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 556778888999999999999999996655
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.81 E-value=3e-18 Score=178.79 Aligned_cols=356 Identities=24% Similarity=0.257 Sum_probs=274.4
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (715)
+|-.+.+|.+.++ .++..|+.-+..+| ++.+.+..+.+.|+|+.|+.+|.+... +++..
T Consensus 235 lpe~i~mL~~q~~------------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~ 294 (717)
T KOG1048|consen 235 LPEVISMLMSQDP------------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQ 294 (717)
T ss_pred cHHHHHHHhccCh------------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHH
Confidence 5566677777666 89999999999999 899999999999999999999999887 99999
Q ss_pred HHHHHHHHhccCcc--chhHHHhcCCcHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC-
Q 005088 185 AADAITNLAHENSS--IKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS- 260 (715)
Q Consensus 185 a~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~- 260 (715)
+|++|.||..+... ++-.+.+.++++.++++++. .|.++++.+..+|+||+. ++..+..++.. .+..|..-+-.
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P 372 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIP 372 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhccc
Confidence 99999999976665 88889999999999999986 789999999999999996 45566555543 45555543321
Q ss_pred -------------CCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHhhhcc------CChHHHHHHHHHHHHHhc
Q 005088 261 -------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (715)
Q Consensus 261 -------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 320 (715)
.+.++-..+..+|.|++....+.++.+.+ .|+++.|+..+++ .+....+++..++.|+.-
T Consensus 373 ~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 373 HSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 13578899999999998877788888876 6889999988873 356778888889988852
Q ss_pred CCc-------------------------------chhHH----------------------HhhcCChHHHHHHh-CCCC
Q 005088 321 TDS-------------------------------DCKVH----------------------IVQRGAVRPLIEML-QSPD 346 (715)
Q Consensus 321 ~~~-------------------------------~~~~~----------------------~~~~~~l~~L~~~L-~~~~ 346 (715)
.-. ..... +....++..-+.+| .+.+
T Consensus 453 rl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n 532 (717)
T KOG1048|consen 453 RLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKN 532 (717)
T ss_pred hhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcc
Confidence 110 00000 11112233333334 3467
Q ss_pred HHHHHHHHHHHHHhHHHH-------H-HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhcccccc
Q 005088 347 VQLREMSAFALGRLAQVI-------T-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 418 (715)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~-------~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L 418 (715)
+.+.++++++|-|++... + ..+....+++.|+++|+..+..|...++.+|+||+.+..++..+- .+
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~----- 606 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KY----- 606 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cc-----
Confidence 889999999999999876 3 344788999999999999999999999999999999988776655 33
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh------hhhHHHHHHHHHHhhc-CCCccchhhhcCCcHHH
Q 005088 419 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKGVQRRVALALAHLC-SPDDQRTIFIDGGGLEL 491 (715)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~v~~~a~~aL~~l~-~~~~~~~~~~~~~~i~~ 491 (715)
+++.|+..|.+. +.++...++.+|.++. .+..+.+.+.+.+|++.
T Consensus 607 ----------------------------a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 607 ----------------------------AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPK 658 (717)
T ss_pred ----------------------------hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHH
Confidence 355566666554 3688999999999996 56678888899999999
Q ss_pred HHHHhcCCCc-chhhhhHHHHHHhhhh
Q 005088 492 LLGLLGSTNP-KQQLDGAVALFKLANK 517 (715)
Q Consensus 492 L~~ll~~~~~-~~~~~aa~~L~~L~~~ 517 (715)
|+.+..+... .+.++|...|..|=..
T Consensus 659 L~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 659 LRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 9999987443 4555555555544443
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.80 E-value=3.4e-17 Score=157.41 Aligned_cols=425 Identities=17% Similarity=0.142 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHH----hcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHH
Q 005088 78 AAAKRATHVLAELAKNEEVVNWIV----EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (715)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~----~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (715)
.+...+..+++..+.++..|..+. .+|.++.|.+...+++. +|..++.++|+|+| ++.+.|..
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R~a 124 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENRAA 124 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhHHH
Confidence 356777888888888766555554 45667777777777666 99999999999999 99999999
Q ss_pred HHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc--cCCHHHHHHHHHH
Q 005088 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGA 230 (715)
Q Consensus 153 i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~ 230 (715)
+.+.|+-..++++|+..-....+ ...+...-+++.|.|...++++.+..+.+.|+++.|...+. -.+....+..+..
T Consensus 125 ~~~lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~ 203 (604)
T KOG4500|consen 125 FFNLGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAP 203 (604)
T ss_pred HHhcCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhc
Confidence 99999988888888764322111 11377788899999999999999999999999999988775 3455555666655
Q ss_pred HHHHhcCChh-hHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc-CCh--
Q 005088 231 LRTLAFKNDE-NKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCS-- 305 (715)
Q Consensus 231 L~~L~~~~~~-~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~-- 305 (715)
..+|..-..+ ......+....-.+++++.+. .++++..++..+...+. ++..+-.+.+.|.+..++++++. .+.
T Consensus 204 f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~ 282 (604)
T KOG4500|consen 204 FFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTK 282 (604)
T ss_pred cccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccc
Confidence 5555531111 133344566677788888664 77788888889988854 56777888899999999999876 221
Q ss_pred -----HHHHHHHHHHHHHhcCCcchhHHHhhcC-ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHH
Q 005088 306 -----ESQREAALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPL 377 (715)
Q Consensus 306 -----~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L 377 (715)
..-..++....-+..+++. ...+...+ +++.+.+|+.+++......+..+|+|+++.+ +..+++.+.+..|
T Consensus 283 k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL 361 (604)
T KOG4500|consen 283 KTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKL 361 (604)
T ss_pred hHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 1222333333334344443 34444444 8999999999999999999999999999999 9999999999999
Q ss_pred HHhhc-----cCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhh--------hhHHHHHHHHHH-H-H
Q 005088 378 LKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT--------KDCVAKTLKRLE-E-K 442 (715)
Q Consensus 378 ~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~--------~~~~~~~~~~~~-~-~ 442 (715)
+.++. +++-+++.+++.+|+|++.-..++..+...|+.+.++.......+. ...+...-..+. + .
T Consensus 362 ~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~ 441 (604)
T KOG4500|consen 362 ISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELA 441 (604)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHh
Confidence 99993 4578899999999999999999999999999887765422211111 111111111111 1 1
Q ss_pred HhhhhHHHHHHHHhhhhhh-HHHHHHHHHHhhcCCCc---cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 443 IHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 443 ~~~~~l~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
-....++.|+.--+++|.. +-....+.+..+..... -...+.+.||+...+.++...+-..+..|..+|+-++..
T Consensus 442 kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 442 KNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred cCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 1445677888877777654 77888888888876644 344556779999999999999999999999988877664
No 20
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.78 E-value=4.7e-18 Score=165.86 Aligned_cols=169 Identities=27% Similarity=0.436 Sum_probs=153.3
Q ss_pred hHHHhcCCCcccEEEEecC-----eeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcc
Q 005088 538 GDQFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD 612 (715)
Q Consensus 538 ~~~~~~~~~~~d~~~~~~~-----~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~ 612 (715)
+..++++...+|+.|.+++ ..+++||.+|+..|++|.+||++++.+....+|.++++.+.+|..+|+|+|++.+.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~ 184 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVK 184 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhh
Confidence 4667899999999999984 68999999999999999999999999987789999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHH-HHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchh
Q 005088 613 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 691 (715)
Q Consensus 613 ~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 691 (715)
+..+++..++.+|++|.++.|...|.++|...+.+.|.+..+.. |..++-++|...|++-|..++++.+..++|.+++.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~ 264 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDS 264 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhh
Confidence 99999999999999999999999999999999888887777666 99999999999999999999999999999999975
Q ss_pred hcHHHHHHHHHHHcCC
Q 005088 692 RIIPEIHNYFAKALTK 707 (715)
Q Consensus 692 ~~~~~l~~~~~~~~~~ 707 (715)
. ...+++++++-..+
T Consensus 265 ~-~dt~~evl~r~~l~ 279 (521)
T KOG2075|consen 265 T-RDTYEEVLRRDTLE 279 (521)
T ss_pred H-HHHHHHHHhhcccc
Confidence 5 56666666654433
No 21
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=148.31 Aligned_cols=162 Identities=23% Similarity=0.437 Sum_probs=137.5
Q ss_pred ccccchHHHhcCCCcccEEEEec---CeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcC
Q 005088 533 PQVYLGDQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTG 609 (715)
Q Consensus 533 ~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~ 609 (715)
....+..+++..+.++|+.|.++ ++.+++||+||++||+|++ |..+-.|. ..+..++|.++++|..+++|+||+
T Consensus 52 RLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~dDad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 52 RLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLDDADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhcccccCHHHHHHhheeeecc
Confidence 34445678899999999999998 4889999999999999887 33222222 346788999999999999999999
Q ss_pred Cccc--CHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhh
Q 005088 610 SVDV--TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHS 687 (715)
Q Consensus 610 ~~~~--~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~ 687 (715)
.+++ +...+.++++.|+.|+++-|+..|+.-+...++.+||+.+|++|++.+..+|...|...|+-+|.++- .+.|.
T Consensus 129 Eidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~Fa 207 (280)
T KOG4591|consen 129 EIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFA 207 (280)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHH
Confidence 9986 45667899999999999999999999999999999999999999999999999999999999999765 45688
Q ss_pred hchhhcHHHHH
Q 005088 688 NLIQRIIPEIH 698 (715)
Q Consensus 688 ~l~~~~~~~l~ 698 (715)
.++...+..++
T Consensus 208 qMs~aLLYklI 218 (280)
T KOG4591|consen 208 QMSAALLYKLI 218 (280)
T ss_pred hccHHHHHHHH
Confidence 88665554444
No 22
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=3.1e-17 Score=171.31 Aligned_cols=373 Identities=19% Similarity=0.251 Sum_probs=279.7
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
..|+.+.+|.+. ++.+|..|+.-+..++. +...+..+.+.|+|+.|+.+|.+... +|+.+|
T Consensus 234 ~lpe~i~mL~~q------~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~a 295 (717)
T KOG1048|consen 234 TLPEVISMLMSQ------DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQA 295 (717)
T ss_pred ccHHHHHHHhcc------ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHHH
Confidence 467777888755 67789999999999998 67888889999999999999999998 999999
Q ss_pred HHHHHhhc-CCh--hhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 137 AFALGLLA-VKP--EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 137 ~~~L~~l~-~~~--~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
+++|.||. +.. +++-.+...++++.++++|+...+. ++++.+..+|+||++. +..+..+. ...+..|.
T Consensus 296 cgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt 366 (717)
T KOG1048|consen 296 CGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSSN-DALKMLII-TSALSTLT 366 (717)
T ss_pred HHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHH
Confidence 99999999 443 4888999999999999999986553 9999999999999974 55554443 34555554
Q ss_pred Hhhcc--------------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhcC------CCHHHHHHHHHH
Q 005088 214 ELLEF--------------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS------EDSAIHYEAVGV 272 (715)
Q Consensus 214 ~ll~~--------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~------~~~~v~~~a~~~ 272 (715)
.-+-. .+.++..++..+|+|++....+.++.+.+ .|++..|+..+++ .+....++|+.+
T Consensus 367 ~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCi 446 (717)
T KOG1048|consen 367 DNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCI 446 (717)
T ss_pred HhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 43311 12567889999999999877888888877 5889999988863 466778889999
Q ss_pred HHHhhcCChh-----HH--------------------------HH----------------------HHHcCChHHHHhh
Q 005088 273 IGNLVHSSPN-----IK--------------------------KE----------------------VLAAGALQPVIGL 299 (715)
Q Consensus 273 L~~L~~~~~~-----~~--------------------------~~----------------------~~~~g~l~~L~~l 299 (715)
+.||+..... .. .. +....++..-..+
T Consensus 447 lRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~L 526 (717)
T KOG1048|consen 447 LRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLL 526 (717)
T ss_pred HhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHH
Confidence 9999643220 00 00 0000123333333
Q ss_pred hc-cCChHHHHHHHHHHHHHhcCCcc----hhHHH-hhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcC
Q 005088 300 LS-SCCSESQREAALLLGQFAATDSD----CKVHI-VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNG 372 (715)
Q Consensus 300 l~-~~~~~~~~~a~~~L~~l~~~~~~----~~~~~-~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~ 372 (715)
|. ..+..+.+.++.+|-|++.+... .+..+ .+..+++.|+++|+.++..+...++.+|.||+.+. .+.++..+
T Consensus 527 l~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~ 606 (717)
T KOG1048|consen 527 LALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKY 606 (717)
T ss_pred HHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcc
Confidence 43 34577888899999999976532 22333 67889999999999999999999999999999999 66677789
Q ss_pred ChHHHHHhhccC------ChhHHHHHHHHHHhcc-CCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhh
Q 005088 373 GLVPLLKLLDSK------NGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 445 (715)
Q Consensus 373 ~l~~L~~ll~~~------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (715)
+++.|++.|.+. +.++...+|.+|.|+. .+..+.+.+.+.+++++|+.
T Consensus 607 a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~------------------------- 661 (717)
T KOG1048|consen 607 AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRL------------------------- 661 (717)
T ss_pred hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHH-------------------------
Confidence 999999999442 3688999999999996 67889999999888877653
Q ss_pred hhHHHHHHHHhh-hhhhHHHHHHHHHHhhcCCCccchhhhcCCcHH
Q 005088 446 RVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 490 (715)
Q Consensus 446 ~~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~ 490 (715)
+..+ .++.+..+|...|..|=...+-+..+...|..+
T Consensus 662 --------I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q 699 (717)
T KOG1048|consen 662 --------ISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQ 699 (717)
T ss_pred --------HhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHH
Confidence 2222 245666666667766655555555544545444
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.5e-15 Score=141.72 Aligned_cols=313 Identities=17% Similarity=0.239 Sum_probs=256.4
Q ss_pred HhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHH
Q 005088 75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (715)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (715)
.+......++.+|..+... |+ +.+..++..++.+|..... +.++....+..+..-| .++.+|..
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ~ 184 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQL 184 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445566777777766653 44 5667788999999977655 3389999999999999 99999999
Q ss_pred HHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCc---------cchhHHHhcCCcHHHHHhhcc-CCHH
Q 005088 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEF-TDTK 222 (715)
Q Consensus 153 i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---------~~~~~~~~~g~i~~L~~ll~~-~~~~ 222 (715)
+.+.++++.+.+.|...... .+.+.++|++..+...++ .....+...|++..|++.++. -+|.
T Consensus 185 ~m~~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHhhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 99999999999888877653 688899999999986332 112356677888899998864 3588
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHH---HHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh
Q 005088 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSA---IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (715)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~---v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ 298 (715)
+...++.+|..|+. +++....+.+.|++..|++++.+. +.. ..+.++..|..|+ +++..+..+++.|+++.++.
T Consensus 258 ~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 88999999999997 788899999999999999999884 333 4577888888885 56788899999999999999
Q ss_pred hhcc--CChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHH--HHHHHhcC
Q 005088 299 LLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVI--TAGIAHNG 372 (715)
Q Consensus 299 ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~--~~~l~~~~ 372 (715)
++.. .+|.+..+++.++.-+|-..|+.-..+++.|+-...++.|+. ....++++|++++.|++.++ ...++-..
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 8863 468999999999999999999999999999999999999976 34679999999999999999 45555567
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHH
Q 005088 373 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 410 (715)
Q Consensus 373 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 410 (715)
|++.|+..-+..++.....+-.+|+.|-.+...+..+.
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wt 453 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWT 453 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhc
Confidence 88999999999999999999999999976666555443
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=3.7e-17 Score=177.30 Aligned_cols=323 Identities=21% Similarity=0.215 Sum_probs=254.7
Q ss_pred hHHHHHHHHHHHHHHhcC-hhh---HHHHHhcCChH-------HHHhhhcCCCCcccccCCCccchHHHh-hHHHHHHhh
Q 005088 76 DRAAAKRATHVLAELAKN-EEV---VNWIVEGGAVP-------ALVKHLQAPPTSEADRNLKPFEHEVEK-GSAFALGLL 143 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~---~~~~~~~g~v~-------~L~~lL~~~~~~~~~~~~~~~~~~v~~-~a~~~L~~l 143 (715)
+.+.+..|-.+|.|+..+ ++. |+.+.--.++. .+-..++...+ ...|.+. +-+. .|+.+|.++
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~---~~apa~~--~H~lcaA~~~lMK~ 325 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGP---AIAPASD--EHQLCAALCTLMKL 325 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCccc--chhhHHHHHHHHHh
Confidence 667889999999999873 432 22222111222 12223333332 1122222 3333 788899999
Q ss_pred cCChhhHHHHHhcCChHHHHHHHccccC----CCcchhhhHHHHHHHHHHHHHhccCccchhHHHh-cCCcHHHHHhhcc
Q 005088 144 AVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLEF 218 (715)
Q Consensus 144 ~~~~~~~~~i~~~~~l~~L~~lL~~~~~----~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~ 218 (715)
+.+++.|..+.+.|++..+-+|+.-... .........+++++..+|.||.+++..++..+.. .|++..+|..|.+
T Consensus 326 SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s 405 (2195)
T KOG2122|consen 326 SFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS 405 (2195)
T ss_pred hccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc
Confidence 9999999999999999999998854321 1222233489999999999999999988887765 5889999999998
Q ss_pred CCHHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHH
Q 005088 219 TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQP 295 (715)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~ 295 (715)
..+++....+.+|+||+...+.+ +..+.+.|-+..|+... +...+......+.+||||+.+..+++..|.. .|.+..
T Consensus 406 ~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaF 485 (2195)
T KOG2122|consen 406 APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAF 485 (2195)
T ss_pred ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHH
Confidence 88899999999999999865555 55567788888888764 4456678889999999999999998888876 689999
Q ss_pred HHhhhccC----ChHHHHHHHHHHHHHhc---CCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---H
Q 005088 296 VIGLLSSC----CSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---T 365 (715)
Q Consensus 296 L~~ll~~~----~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~ 365 (715)
|+.+|... .-.+.+.+-.+|.|+++ ..+..++.+.+++++..|++.|++.+..+..++|++||||+..+ +
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ 565 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ 565 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH
Confidence 99999754 35677888889988764 46677888899999999999999999999999999999999888 9
Q ss_pred HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC
Q 005088 366 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 403 (715)
+.+++.|+++.|..++++++..+.+.++.+|.||....
T Consensus 566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999997654
No 25
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=158.41 Aligned_cols=164 Identities=20% Similarity=0.375 Sum_probs=151.4
Q ss_pred ccccchHHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceec----CCCCHHHHHHHHHHHhc
Q 005088 533 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYT 608 (715)
Q Consensus 533 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Y~ 608 (715)
..-|..+.+|.++..+||.+.+-|.++++||.-|. .|+||++||+|.|+|++...|.+ +.++.+++..++.-+|.
T Consensus 55 t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~ 133 (488)
T KOG4682|consen 55 TQKYIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYR 133 (488)
T ss_pred HHHHHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhh
Confidence 44577789999999999999999999999999998 99999999999999999887665 46899999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhh
Q 005088 609 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSN 688 (715)
Q Consensus 609 ~~~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 688 (715)
+.+.+..+.+..++.+|..+++++|.+.|.+.+...+++.+++.+|+.+.+|+.+.+++.|.+++..|+-.+....-+.+
T Consensus 134 dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~e 213 (488)
T KOG4682|consen 134 DEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKE 213 (488)
T ss_pred hheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred chhhcHHHH
Q 005088 689 LIQRIIPEI 697 (715)
Q Consensus 689 l~~~~~~~l 697 (715)
++.+.+..+
T Consensus 214 i~~~Lm~~l 222 (488)
T KOG4682|consen 214 ISINLMKQL 222 (488)
T ss_pred cCHHHHHHH
Confidence 766654443
No 26
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.72 E-value=2.1e-17 Score=139.92 Aligned_cols=106 Identities=32% Similarity=0.661 Sum_probs=95.6
Q ss_pred HHHhcCCCcccEEEEec-CeeecchHHHHhhccHHHHHhhcCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCCcccC-H
Q 005088 539 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-L 615 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~-~~~~~~h~~iL~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~ 615 (715)
+++++++.++|++|.++ +..|++||.+|+++|+||+.+|.++ +++.+...+.++++++++|..+++|+|+|.+.++ .
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence 56788999999999999 7999999999999999999999998 5666666899999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHhc
Q 005088 616 DIAQDLLRAADQYLLEGLKRLCEYTIAQD 644 (715)
Q Consensus 616 ~~~~~ll~~A~~~~~~~L~~~~~~~l~~~ 644 (715)
+++.+++.+|++|+++.|+..|+.++.++
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999998763
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.71 E-value=3.8e-14 Score=151.39 Aligned_cols=393 Identities=19% Similarity=0.206 Sum_probs=285.2
Q ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHH
Q 005088 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (715)
+++....++.+|..+......... ..+..+.|...|.++++ .|+..+++.++++. .+......+.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 455567788888888774332222 45567899999999888 99999999999999 5555667777
Q ss_pred hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
+.++++.++.++.+.+. ++...|+.+|.+++.... ..+.+...+.+..|..++..++..+|..+..++.++
T Consensus 117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999998876 999999999999997544 445677788899999999888889999999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHH-----H-
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-----Q- 308 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~-----~- 308 (715)
+..+++......+.|+++.++..+.++|.-++..++.+|..|+. .+...+.+.+.|+++.|..++.+...+- .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 98889999999999999999999999999999999999999988 5666788999999999999997643221 2
Q ss_pred HHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHH-Hhc-CChHHHH----Hh
Q 005088 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGI-AHN-GGLVPLL----KL 380 (715)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l-~~~-~~l~~L~----~l 380 (715)
-......++++...+...... -..++..+.+++.+.++..+..|..+++.++... +..+ ... +.++.++ ..
T Consensus 267 ~g~~~f~g~la~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hhHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 223356677766433322211 1345566677778899999999999999999777 4444 222 2333333 34
Q ss_pred hccCChhHHHHHHHHHHhccCCCch--hhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHH-HHHHHHhh
Q 005088 381 LDSKNGSLQHNAAFALYGLADNEDN--VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRV 457 (715)
Q Consensus 381 l~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~ll~~ 457 (715)
..+...+++..++.++.++...... ...+.. ....+-......-.. .+..+++.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~-----------------------~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDILS-----------------------ITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHHH-----------------------HHHHHHHHhcCCchHHHHHHHhcC
Confidence 4567788999999999999533221 111110 001111111222233 78888888
Q ss_pred hhhhHHHHHHHHHHhhcCCCccchhhhcC-CcHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 458 AEKGVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 458 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
+-|++|.++.+.|..++..+.+...+... |.+..|..--...+.+.+..=-.++..|..
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 88999999999999999998876666554 545555544444444444433333444443
No 28
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.69 E-value=1.4e-16 Score=164.21 Aligned_cols=161 Identities=21% Similarity=0.399 Sum_probs=143.3
Q ss_pred CcccEEEEe-cCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc-CCcc-----cCHHHH
Q 005088 546 TLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD-----VTLDIA 618 (715)
Q Consensus 546 ~~~d~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~-----~~~~~~ 618 (715)
..-|+.|++ +|+.++||+++|++|++||..||...|.|+..-.+....++.+.+..+|+|+|+ ++.. ...+.+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 334677766 567799999999999999999999999998875555556679999999999995 4433 234567
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHH
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 698 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 698 (715)
.+++.+||.|.+.+|+..|+..|...++..+|..++++|..|+++.|+..|++||+.|++.++......+++...+..+.
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l~ 868 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKLA 868 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHHHcC
Q 005088 699 NYFAKALT 706 (715)
Q Consensus 699 ~~~~~~~~ 706 (715)
+.++++++
T Consensus 869 ~~yrkm~~ 876 (1267)
T KOG0783|consen 869 QRYRKMLS 876 (1267)
T ss_pred HHHHHHhh
Confidence 99999997
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.66 E-value=8.4e-14 Score=148.75 Aligned_cols=365 Identities=20% Similarity=0.195 Sum_probs=279.9
Q ss_pred HHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHH
Q 005088 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (715)
Q Consensus 108 ~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 187 (715)
.+...|+..+. +....++.+|..+......... ..+..+.|...|.++++ .++..+++
T Consensus 42 ~lf~~L~~~~~------------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~ 99 (503)
T PF10508_consen 42 VLFDCLNTSNR------------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLALK 99 (503)
T ss_pred HHHHHHhhcCh------------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHH
Confidence 37777877655 6667888888888843333332 44567888899998776 99999999
Q ss_pred HHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHH
Q 005088 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (715)
Q Consensus 188 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~ 267 (715)
.|.++..++......+.+.+.++.++.++.+++..+...|+.+|..++. .+.....+.+.+.+..|..++..+++.+|.
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~ 178 (503)
T PF10508_consen 100 QLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRC 178 (503)
T ss_pred HHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHH
Confidence 9999998777777778889999999999999999999999999999996 455566677888899999999888999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--C
Q 005088 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--P 345 (715)
Q Consensus 268 ~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~ 345 (715)
.+..++.+++..+++....+.+.|+++.++..+.+.|.-++..++.++..++. .+.....+.+.|+++.|..++.+ .
T Consensus 179 Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 179 RVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999889999999999999997 77778889999999999999965 2
Q ss_pred CH---H-HHHHHHHHHHHhHHHHHHHHHh--cCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHH-Hhhcccccc
Q 005088 346 DV---Q-LREMSAFALGRLAQVITAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQKL 418 (715)
Q Consensus 346 ~~---~-v~~~a~~~L~~l~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~~i~~L 418 (715)
+| . ..-......++++......+.. ..++..+.+++.+.++..+..|..+++.++.+.++...+ ...+.
T Consensus 258 dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~---- 333 (503)
T PF10508_consen 258 DPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP---- 333 (503)
T ss_pred CCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch----
Confidence 33 1 1122234555665533111111 234445566778899999999999999999888877776 33221
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc----------cchhh--hcC
Q 005088 419 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----------QRTIF--IDG 486 (715)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----------~~~~~--~~~ 486 (715)
.-..++..+.....+...+++..++.++.++...+. ...++ ...
T Consensus 334 ------------------------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~ 389 (503)
T PF10508_consen 334 ------------------------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSG 389 (503)
T ss_pred ------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcC
Confidence 011244555566666778899999999999933322 11111 122
Q ss_pred CcHH-HHHHHhcCCCcchhhhhHHHHHHhhhhccccccc
Q 005088 487 GGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSV 524 (715)
Q Consensus 487 ~~i~-~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~~~~~ 524 (715)
+-.. .+..+++.+=+++|.++-..|..|+...|+...+
T Consensus 390 ~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i 428 (503)
T PF10508_consen 390 SPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI 428 (503)
T ss_pred CchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3334 6778888888999999999999999987766643
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-13 Score=132.94 Aligned_cols=346 Identities=17% Similarity=0.139 Sum_probs=249.8
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
.|+.....++...+.++..|..+....+...++++|......+ +.++...++++|+|+|..+.++|..+.+.||-.
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~----d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSP----DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC----cccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 5677778888888866666666555544444555554332211 129999999999999999999999999999977
Q ss_pred HHHHhhcc----C---CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh
Q 005088 211 PLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSP 281 (715)
Q Consensus 211 ~L~~ll~~----~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~ 281 (715)
.++..|+. + +.+....+++.|.|...++.+.+..+.+.|+++.|...+.=+ +...-...+....|+..-..
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 77777753 2 246777888999999988999999999999999998887543 44555555555555533211
Q ss_pred h-HHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHH-------HHH
Q 005088 282 N-IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-------LRE 351 (715)
Q Consensus 282 ~-~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~-------v~~ 351 (715)
+ ......+..+.-.+++++... .++...-+..++...+ .++..+..+.+.|.+..++++++. .+.. .-.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 2 223333445556666666543 3555555666666665 566777788889999999999865 2221 222
Q ss_pred HHHHHHHHhHHHH--HHHHHhcC-ChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhh
Q 005088 352 MSAFALGRLAQVI--TAGIAHNG-GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 428 (715)
Q Consensus 352 ~a~~~L~~l~~~~--~~~l~~~~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 428 (715)
.++....-+..++ -..+...+ .++.+..++.+.+...+..+..+++|+++.++++..+++.|.+++
T Consensus 292 ~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nk----------- 360 (604)
T KOG4500|consen 292 RIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNK----------- 360 (604)
T ss_pred hhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHH-----------
Confidence 3333333333332 44455555 788899999999999999999999999999999999999875544
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhh-----hhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcch
Q 005088 429 KDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 503 (715)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 503 (715)
|++++.. ++..+|.+++.+|.|++....++..+...|..+.+...++...|++
T Consensus 361 ----------------------L~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 361 ----------------------LISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred ----------------------HHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcc
Confidence 4444443 4778899999999999999999999999999999999999989998
Q ss_pred hhhhHHHHHHh
Q 005088 504 QLDGAVALFKL 514 (715)
Q Consensus 504 ~~~aa~~L~~L 514 (715)
+..-...+.-+
T Consensus 419 ~fkllgTlrM~ 429 (604)
T KOG4500|consen 419 TFKLLGTLRMI 429 (604)
T ss_pred hHHHHHHHHHH
Confidence 88776665543
No 31
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.59 E-value=4.6e-15 Score=120.32 Aligned_cols=90 Identities=37% Similarity=0.692 Sum_probs=85.4
Q ss_pred cEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Q 005088 549 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY 628 (715)
Q Consensus 549 d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~ 628 (715)
|+++.++|+.|++||.+|+++|+||+.||.+++.+.....+.+++.++++|+.+++|+|++++.++..++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999998887777889999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHH
Q 005088 629 LLEGLKRLCE 638 (715)
Q Consensus 629 ~~~~L~~~~~ 638 (715)
+++.|+..|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=9.1e-13 Score=128.92 Aligned_cols=400 Identities=15% Similarity=0.140 Sum_probs=298.3
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
...+.++-+.+...... .......|+..|.|++.+-..-..++..++|..|+..|...+. ++...
T Consensus 259 k~e~dr~~kklk~~~~K---QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~------------~Ll~l 323 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRK---QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS------------SLLTL 323 (791)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch------------HHHHH
Confidence 33455555555544322 2235667888999999987777778889999999999998887 89999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHh
Q 005088 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (715)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 215 (715)
....|..|+-..+++..+.+.|.+..|+++.....+ +++...+..+.|++. +...+...+..|.+|.+..+
T Consensus 324 v~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~l 394 (791)
T KOG1222|consen 324 VIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASL 394 (791)
T ss_pred HHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccchHHHHHH
Confidence 999999999667788889999999999999988776 999999999999998 55567778888999999999
Q ss_pred hccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
+.+... ..-|+..|..++- ++..+..+.-..+++.+++.+-++ +.+|-...+..--||+.. ..+.+.+.+-.++.
T Consensus 395 l~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~ 470 (791)
T KOG1222|consen 395 LDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLD 470 (791)
T ss_pred hCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchH
Confidence 976542 3346677888884 677888888888999999866553 555555555555677543 34446666666788
Q ss_pred HHHhhh-ccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---HHHHH
Q 005088 295 PVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---TAGIA 369 (715)
Q Consensus 295 ~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---~~~l~ 369 (715)
.|++.- ...++-+ ...+.|++.+....+..+++ .+..|...++. .+......+.++|+||.... ...+-
T Consensus 471 ~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq 544 (791)
T KOG1222|consen 471 LLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQ 544 (791)
T ss_pred HHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHh
Confidence 777653 3344322 45788888766555555553 45666666665 45667778889999998866 77777
Q ss_pred hcCChHHHHHhhccC--ChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhh
Q 005088 370 HNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 447 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (715)
+.+.+|.+-..|... ...++...+-+++.+++.......+..+| +
T Consensus 545 ~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~---------------------------------~ 591 (791)
T KOG1222|consen 545 SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK---------------------------------L 591 (791)
T ss_pred hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc---------------------------------c
Confidence 889999999888543 45577777888888888777666666655 4
Q ss_pred HHHHHHHHhhh--hhhHHHHHHHHHHhhcCCCccchhhhcCCcHH-HHHHHhcCCCcchhhhhHHHHHHhhhhccccc
Q 005088 448 LNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLS 522 (715)
Q Consensus 448 l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~~~ 522 (715)
++.|+++|+.. +.+...+...+...+...+..+..+.+....+ .++.++.+.|.++|+.|--+|--++.+.+.+.
T Consensus 592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 55677777765 66788888888888877766777777665544 68999999999999999999988887655443
No 33
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=3e-13 Score=132.28 Aligned_cols=255 Identities=18% Similarity=0.147 Sum_probs=197.7
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (715)
-.++.|..+|.+.+. .++..+++.|..+-. ...++.+..++.++++.+|..++++|+.|..
T Consensus 23 ~~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 23 LNDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred ccHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 357889999988776 899999999987742 2355678888999999999999999999974
Q ss_pred CChhhHHHHHhCCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHH
Q 005088 237 KNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (715)
Q Consensus 237 ~~~~~~~~~~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L 315 (715)
.. .. ....++.|..+ ++++++.|+..++.+|+++....... ...++..+...+.+.++.+|..++++|
T Consensus 84 ~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 84 AK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred Cc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 21 11 11356777766 67789999999999999995432211 112355577778888999999999999
Q ss_pred HHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHH
Q 005088 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 395 (715)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 395 (715)
+.+.. ...++.|+.+|.++++.||..|+.+|+.+... ....++.|+.++.+.++.|+..|+++
T Consensus 153 g~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~------~~~~~~~L~~~L~D~~~~VR~~A~~a 215 (280)
T PRK09687 153 SVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD------NPDIREAFVAMLQDKNEEIRIEAIIG 215 (280)
T ss_pred hccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC------CHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 87631 23579999999999999999999999988321 12466789999999999999999999
Q ss_pred HHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 396 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 396 L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
|+.+-.. .+++.|++.+.+++ ++..++.+|+++..
T Consensus 216 Lg~~~~~-------------------------------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 216 LALRKDK-------------------------------------------RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHccCCh-------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 9986421 25778888888766 67889999999853
Q ss_pred CCccchhhhcCCcHHHHHHHhc-CCCcchhhhhHHHHHH
Q 005088 476 PDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 513 (715)
Q Consensus 476 ~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~aa~~L~~ 513 (715)
...+|.|.+++. ++++.++..|.++|..
T Consensus 251 ----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 ----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 367899999996 7899999999888753
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.53 E-value=1.9e-12 Score=148.76 Aligned_cols=276 Identities=22% Similarity=0.186 Sum_probs=184.7
Q ss_pred cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 103 ~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
.+.++.|++.|+++++ .||..|+..|+.+.. .+.++.|+..|++.+. .++
T Consensus 620 ~~~~~~L~~~L~D~d~------------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR 669 (897)
T PRK13800 620 APSVAELAPYLADPDP------------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVR 669 (897)
T ss_pred chhHHHHHHHhcCCCH------------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHH
Confidence 3456677777776666 777777777776641 1246677777766554 777
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 262 (715)
..|+..|..+.... ...+.|...|.++++.++..++.+|..+... -...++..|.+++
T Consensus 670 ~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d 727 (897)
T PRK13800 670 RAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPD 727 (897)
T ss_pred HHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCC
Confidence 77777776663211 1124566667777777777777777765421 1234566777777
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 342 (715)
+.+|..++.+|+.+-. .+.|...+.+.++.+|..++.+|+.+.... ...++.|..++
T Consensus 728 ~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll 784 (897)
T PRK13800 728 HRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT 784 (897)
T ss_pred HHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh
Confidence 7777777777776511 123556677777777777777777764321 12256677777
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccch
Q 005088 343 QSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 422 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~ 422 (715)
+++++.+|..|+.+|+++... ......++..+.+.++.||..|+.+|..+..
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--------------------- 836 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCP-------PDDVAAATAALRASAWQVRQGAARALAGAAA--------------------- 836 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHHhcCCChHHHHHHHHHHHhccc---------------------
Confidence 777777777777777666321 1123456677777777777777777776532
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcc
Q 005088 423 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 502 (715)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 502 (715)
...++.|+.+|.++++.||..|+.+|..+.. .....+.|...++++++.
T Consensus 837 ----------------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d~~ 885 (897)
T PRK13800 837 ----------------------DVAVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSDAD 885 (897)
T ss_pred ----------------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCCHH
Confidence 2246788999999999999999999999721 223467788999999999
Q ss_pred hhhhhHHHHH
Q 005088 503 QQLDGAVALF 512 (715)
Q Consensus 503 ~~~~aa~~L~ 512 (715)
||..|+.+|.
T Consensus 886 Vr~~A~~aL~ 895 (897)
T PRK13800 886 VRAYARRALA 895 (897)
T ss_pred HHHHHHHHHh
Confidence 9999999885
No 35
>PRK09687 putative lyase; Provisional
Probab=99.53 E-value=9.8e-13 Score=128.64 Aligned_cols=254 Identities=16% Similarity=0.105 Sum_probs=197.0
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (715)
.++.|+++|.+.+. .++..++++|..+-.. .+++.+..++.+.+. .++..
T Consensus 24 ~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~d~--------~vR~~ 73 (280)
T PRK09687 24 NDDELFRLLDDHNS------------LKRISSIRVLQLRGGQ----------DVFRLAIELCSSKNP--------IERDI 73 (280)
T ss_pred cHHHHHHHHhCCCH------------HHHHHHHHHHHhcCcc----------hHHHHHHHHHhCCCH--------HHHHH
Confidence 47889999988888 9999999999887532 246778888877765 99999
Q ss_pred HHHHHHHHhccCccchhHHHhcCCcHHHHHh-hccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCH
Q 005088 185 AADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (715)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~ 263 (715)
++++|+.+-.... . ....++.|..+ ++++++.|+..|+.+|++++...... ...+++.+...+.++++
T Consensus 74 A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 74 GADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKST 142 (280)
T ss_pred HHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCH
Confidence 9999999853111 1 12345677766 67888999999999999997422111 11245667778888999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC
Q 005088 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (715)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~ 343 (715)
.||..++++|+++. ++. .++.|+.++.+.++.++..|+.+|+.+...++ ..++.|+..|.
T Consensus 143 ~VR~~a~~aLg~~~--~~~---------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~ 202 (280)
T PRK09687 143 NVRFAVAFALSVIN--DEA---------AIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQ 202 (280)
T ss_pred HHHHHHHHHHhccC--CHH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhc
Confidence 99999999998873 222 57889999999999999999999999842222 34688999999
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchh
Q 005088 344 SPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 423 (715)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~ 423 (715)
+.++.||..|+++|+.+- +..+++.|++.+.+++ ++..++.+|+++...
T Consensus 203 D~~~~VR~~A~~aLg~~~--------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------------- 251 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRK--------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------------- 251 (280)
T ss_pred CCChHHHHHHHHHHHccC--------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---------------------
Confidence 999999999999998864 3468999999998766 677888999888532
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHh-hhhhhHHHHHHHHHHh
Q 005088 424 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAH 472 (715)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~ 472 (715)
..++.|.+++. .+|+.++..|..+|..
T Consensus 252 ----------------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ----------------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----------------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 25677888886 6789999999888753
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.48 E-value=2.4e-11 Score=124.35 Aligned_cols=392 Identities=16% Similarity=0.152 Sum_probs=279.0
Q ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHH
Q 005088 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (715)
+++....+..-..|++. +++....+++.|+++.|+.++...+.. .+++.+.+.+++.+. +.......+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s----------~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGS----------TELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCc----------hhhhhhHHHHHHhHHhhccchHHHH
Confidence 66667888888888776 566666899999999999999887763 377778888888888 788888889
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhH--HHhcCCcHHHHHhhccCCHHHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR--VRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~g~i~~L~~ll~~~~~~v~~~a~~~L 231 (715)
.+.+.++.|+++|.+.+.. .+++..+.++.++...++..... ......++.+..++..+.......-+...
T Consensus 92 L~~~~ll~Ll~LLs~sD~~-------~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSL-------NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA 164 (678)
T ss_pred HHHhhHHHHHHHhcCcchH-------hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999988732 89999999999998655432221 22223344444444435555555566666
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHH---HhhcCChhHHHHHH----HcCChH--HHHhhhcc
Q 005088 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG---NLVHSSPNIKKEVL----AAGALQ--PVIGLLSS 302 (715)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~~~----~~g~l~--~L~~ll~~ 302 (715)
.+++. .+..+......|+.+.+.-++...+...|..|+.+++ ++...++....... ..|+.+ .+..++.+
T Consensus 165 a~~s~-~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~ 243 (678)
T KOG1293|consen 165 AHLSS-TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKD 243 (678)
T ss_pred ccccc-cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhC
Confidence 67774 5677777888899999988888888899999999999 77666665443332 344444 45566666
Q ss_pred CChHHHHHHHHHHHHHhcCC--------c----ch---------------------------------------hHHHhh
Q 005088 303 CCSESQREAALLLGQFAATD--------S----DC---------------------------------------KVHIVQ 331 (715)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~--------~----~~---------------------------------------~~~~~~ 331 (715)
++...+..++.++.++...+ . +. +....+
T Consensus 244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e 323 (678)
T KOG1293|consen 244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHE 323 (678)
T ss_pred CCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhh
Confidence 66666666666665554322 0 00 000000
Q ss_pred cCChHHHHHHh----------------------------------------------------CCCCHHHHHHHHHHHHH
Q 005088 332 RGAVRPLIEML----------------------------------------------------QSPDVQLREMSAFALGR 359 (715)
Q Consensus 332 ~~~l~~L~~~L----------------------------------------------------~~~~~~v~~~a~~~L~~ 359 (715)
....+.+.+++ ...+...+.+|+.++.+
T Consensus 324 ~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s 403 (678)
T KOG1293|consen 324 EATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKS 403 (678)
T ss_pred hhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 01111111111 12455667777778877
Q ss_pred hHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC-CCchhhHHHhhccccccccchhhhhhhhhHHHHH
Q 005088 360 LAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 435 (715)
Q Consensus 360 l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 435 (715)
++..- +..+-..++..+|++++.+++..|...++++|+|+.. ..+.+..|++.|+|.
T Consensus 404 ~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId------------------- 464 (678)
T KOG1293|consen 404 FSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID------------------- 464 (678)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH-------------------
Confidence 77665 5557778899999999999999999999999999954 466677788877554
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccch--hhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 436 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT--IFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 436 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
.+.+++.+.++.++..+.++|+++....+... .+...=+...|..+.+++++.||+.|-..|.|
T Consensus 465 --------------~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 465 --------------ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred --------------HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56788899999999999999999987766333 33333345678889999999999999999999
Q ss_pred hhhhc
Q 005088 514 LANKA 518 (715)
Q Consensus 514 L~~~~ 518 (715)
|..+.
T Consensus 531 l~c~~ 535 (678)
T KOG1293|consen 531 LTCNS 535 (678)
T ss_pred hhcCc
Confidence 98863
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.47 E-value=1.3e-11 Score=141.82 Aligned_cols=263 Identities=21% Similarity=0.170 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHh
Q 005088 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (715)
++.++..|+..|..+.. .+.++.|+.+|++++. .||..|+.+|..+.....
T Consensus 634 d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~------------~VR~~Aa~aL~~l~~~~~------- 684 (897)
T PRK13800 634 DPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAA------------AVRRAAAEGLRELVEVLP------- 684 (897)
T ss_pred CHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccC-------
Confidence 78889999999987642 3458899999988877 999999999988852211
Q ss_pred cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHh
Q 005088 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (715)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (715)
..+.+...|.+.++ .++..++..|..+.. +-...++..|.++++.++..|+.+|..+-
T Consensus 685 --~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 685 --PAPALRDHLGSPDP--------VVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred --chHHHHHHhcCCCH--------HHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 13567778877544 899999998888642 12346778899999999999999998763
Q ss_pred cCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHH
Q 005088 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (715)
Q Consensus 236 ~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L 315 (715)
. .+.|..++.++++.||..++.+|+.+.... ...++.|..++.+.++.+|..|+.+|
T Consensus 743 ~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aL 799 (897)
T PRK13800 743 D--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAAL 799 (897)
T ss_pred C--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 245678899999999999999999984332 12367888999999999999999999
Q ss_pred HHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHH
Q 005088 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 395 (715)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 395 (715)
+++.. +. ...+.++..|.++++.||..|+.+|..+. ....++.|+.+|+++++.||..|+++
T Consensus 800 g~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 800 AELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 99842 11 12356888999999999999999998774 24567899999999999999999999
Q ss_pred HHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHh
Q 005088 396 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 472 (715)
Q Consensus 396 L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 472 (715)
|..+...+. ..+.|...+++.++.|+..|..+|..
T Consensus 862 L~~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 862 LTRWPGDPA------------------------------------------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HhccCCCHH------------------------------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999732221 34556778899999999999999864
No 38
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.7e-11 Score=120.24 Aligned_cols=357 Identities=17% Similarity=0.172 Sum_probs=263.2
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
.-..+|.+|...+..+ +.+........|..++--.++...+.+.|.++.|+.+....++ +++...+
T Consensus 301 rrkniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~~tl 366 (791)
T KOG1222|consen 301 RRKNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRKATL 366 (791)
T ss_pred HHHhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHHHHH
Confidence 3344666666666654 4445666677777777767788889999999999999998888 9999999
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh-
Q 005088 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL- 216 (715)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll- 216 (715)
+.+.|++.+...+..++..|.+|.+..+|.+... ...|+..|..++. ++..+.++.-..+++.+...+
T Consensus 367 ~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~----------~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 367 MLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----------HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred HHhhhccccccccHHHhhccchHHHHHHhCCccc----------chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999988643 2457777888775 667788888888999888755
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005088 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (715)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~ 295 (715)
...+.++-...+....|||. +..+.+.+.+..++..|+... +..++- ....+.|++.+.......+++ .+..
T Consensus 436 ~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgd 508 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGD 508 (791)
T ss_pred hcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHH
Confidence 34455666666666678885 667777788888898888754 444442 345677887765555444443 2344
Q ss_pred HHhhhcc-CChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHH--HHHHHh
Q 005088 296 VIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVI--TAGIAH 370 (715)
Q Consensus 296 L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~--~~~l~~ 370 (715)
|...+.. .+.....+++.+++|+.-.+-+....+.....+|.+-..|.. ...+++...+-+++.++... ...+..
T Consensus 509 La~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~ 588 (791)
T KOG1222|consen 509 LAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAP 588 (791)
T ss_pred HHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCc
Confidence 4555543 346677889999999987666777777778999999988865 34556777777888888777 556667
Q ss_pred cCChHHHHHhhcc--CChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhH
Q 005088 371 NGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 448 (715)
Q Consensus 371 ~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (715)
.+.++.++++|+. .+.+...........+..+...+..+++.-. .-
T Consensus 589 a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~--------------------------------~~ 636 (791)
T KOG1222|consen 589 AKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETA--------------------------------LG 636 (791)
T ss_pred cccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------------ch
Confidence 7999999999954 4566667777777777666555555444221 23
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCCCc
Q 005088 449 NHLLYLMRVAEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 449 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 478 (715)
..|+.++++.+.++|..+-.+|-.++..++
T Consensus 637 AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 637 AYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 468899999999999999999988876653
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=1.2e-11 Score=117.85 Aligned_cols=193 Identities=18% Similarity=0.186 Sum_probs=162.2
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
.....++..|... .|+.++..++.++++.+..+..+..+.+.|+++.+..+|.++++ .++..|
T Consensus 12 ~~l~~Ll~lL~~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~A 74 (254)
T PF04826_consen 12 QELQKLLCLLEST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKA 74 (254)
T ss_pred HHHHHHHHHHhcC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHH
Confidence 3456677777765 58889999999999999999999999999999999999999988 999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh
Q 005088 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (715)
Q Consensus 137 ~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 216 (715)
+++|.|++.+.+++..+-. .++.+++.+.+...+ .+++..++.+|.+++.. ...+..+. +.++.++.++
T Consensus 75 L~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~ln------s~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL 143 (254)
T PF04826_consen 75 LNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLN------SEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLL 143 (254)
T ss_pred HHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCC------CHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHH
Confidence 9999999988888776643 477777765554321 28889999999999864 44454443 5799999999
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 005088 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~ 278 (715)
.+++..++..++++|.||+. ++.....+...+++..++.++... +.++...++..+.|+..
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999996 788888888889999999999886 78899999999999953
No 40
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.41 E-value=1.4e-11 Score=117.38 Aligned_cols=195 Identities=24% Similarity=0.333 Sum_probs=161.7
Q ss_pred HhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhH
Q 005088 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (715)
Q Consensus 101 ~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (715)
.+.+-++.|+.+|+.... +.+++.++.++++.+..+..++.+.+.|+++.+..+|.++++ .
T Consensus 9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~ 69 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S 69 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence 455678899999986543 299999999999999999999999999999999999999876 9
Q ss_pred HHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
++..|+++|.|++. +.+++..+. ..++.+++.+.+ -+..++..++++|.+|+.. +..+..+. +.++.++.++
T Consensus 70 vr~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL 143 (254)
T PF04826_consen 70 VREKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHH
Confidence 99999999999986 455555443 346666665443 3578999999999999964 44455554 3699999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHHHHHhcC
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAAT 321 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 321 (715)
.+++..++..++++|.||+. ++.....++..+++..++.++... +.++...++..+.|+..+
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999965 577788889999999999999876 578889999999999643
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.36 E-value=3e-10 Score=115.34 Aligned_cols=345 Identities=14% Similarity=0.149 Sum_probs=240.3
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc-----CCcHHHHHhhccCCHHHHHHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGALR 232 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-----g~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (715)
.+..++.++.....+ ++.++.+..+..+...++.....|.+. .....++.+|..++.-+...++.+|.
T Consensus 54 y~~~~l~ll~~~~~~-------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 54 YVKTFVNLLSQIDKD-------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 466777777776553 888888888888887776655555553 45677888998888889999999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--ChHHHH
Q 005088 233 TLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 309 (715)
Q Consensus 233 ~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~ 309 (715)
.+....+.........-..+.|...+.+. +...+..++.+|..|... +..+..+.+.++++.|+.+|+.. ...+..
T Consensus 127 ~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 127 KLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred HHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHH
Confidence 99854333211111111334555566554 467777788999998654 66778888888999999999864 458899
Q ss_pred HHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---------HHHHHhcCChHHHHH
Q 005088 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---------TAGIAHNGGLVPLLK 379 (715)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---------~~~l~~~~~l~~L~~ 379 (715)
+++.+++-++.. ++........++++.|+++++. ....+.+.++.+|.|+.... ...+++.|+++.+-.
T Consensus 206 ~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~ 284 (429)
T cd00256 206 QSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS 284 (429)
T ss_pred HHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence 999999999764 3455556668999999999976 67789999999999999843 345566666554444
Q ss_pred hhcc--CChhHHHHHHHHHHh-------ccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHH
Q 005088 380 LLDS--KNGSLQHNAAFALYG-------LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 450 (715)
Q Consensus 380 ll~~--~~~~v~~~a~~~L~~-------l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (715)
+... .++++....-..-.. ++.-++....+ .+|.+. ....+.+......+...+..-- ..++..
T Consensus 285 L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El-~sg~L~-----WSp~H~se~FW~EN~~kf~~~~-~~llk~ 357 (429)
T cd00256 285 LEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSEL-RSGRLH-----WSPVHKSEKFWRENADRLNEKN-YELLKI 357 (429)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-hcCCcc-----CCCCCCCchHHHHHHHHHHhcc-hHHHHH
Confidence 4422 355554433322222 22222222222 123222 1223444455566665554333 567899
Q ss_pred HHHHHh-hhhhhHHHHHHHHHHhhcCC-CccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 451 LLYLMR-VAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 451 L~~ll~-~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
|+.+|. +.++.+..-||.=|+.++.. |.++.++.+.|+-..+.+++.++|++|+..|..|+..|+.+.
T Consensus 358 L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 358 LIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999995 45788888899999999765 568888888899999999999999999999999999887654
No 42
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=9.6e-10 Score=120.14 Aligned_cols=401 Identities=17% Similarity=0.154 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHH
Q 005088 76 DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i 153 (715)
.+.++..-+.+++.++++ ++.. .++++.|.+-.++.++ ..|+.|+.+|.++...-..+
T Consensus 93 ~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~~------------~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPNP------------SLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred chHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCCc------------chhHHHHHHHHhhhhhhccc---
Confidence 455777778888888774 3311 2457788888888887 89999999999998222111
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh-cCCcHHHHHh----hccCCHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVEL----LEFTDTKVQRAAA 228 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~l----l~~~~~~v~~~a~ 228 (715)
..+.++.+..++...-.++.. .++..++.++..++...+.++..... ...+|.++.. +..++......+.
T Consensus 153 -~~~~~~~l~~lf~q~~~d~s~----~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l 227 (1075)
T KOG2171|consen 153 -LQPHLDDLLRLFSQTMTDPSS----PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSAL 227 (1075)
T ss_pred -cchhHHHHHHHHHHhccCCcc----hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHH
Confidence 122344555555444332211 68899999999888544322222111 2345555544 4566777778888
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHhhhccCC
Q 005088 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCC 304 (715)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll~~~~ 304 (715)
.+|..++...+..-..... .+++....+.++. ++.+|..|+.+|..++...+..++.... ..+++.++.++.+..
T Consensus 228 ~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~ 306 (1075)
T KOG2171|consen 228 EALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEE 306 (1075)
T ss_pred HHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcc
Confidence 9999888655544332222 3556666666654 7899999999999997765544333222 335666666664311
Q ss_pred ----------------hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 005088 305 ----------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGI 368 (715)
Q Consensus 305 ----------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l 368 (715)
......|..++-.++.+-+..... .-+++.+-.++.+.++.-|++++.+|+.++.+..+.+
T Consensus 307 ~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 307 DDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL---PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred cchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 113455667777777643322211 1236777788899999999999999999998884444
Q ss_pred Hh--cCChHHHHHhhccCChhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhhhhhhhhHHHHHH---------
Q 005088 369 AH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL--------- 436 (715)
Q Consensus 369 ~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~--------- 436 (715)
.. ..+++.++..|+++++.||..|+.+++.++.+ .+........-.++.|.....+....+.+.-.+.
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 33 25677788888999999999999999999865 3344444444455555554444333333221111
Q ss_pred -HHHHHHHhhhhHH-HHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCC-cchhh
Q 005088 437 -KRLEEKIHGRVLN-HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN-PKQQL 505 (715)
Q Consensus 437 -~~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~ 505 (715)
..+-.-+-.++++ .+..++.++.+.++..++.+|+..+...+....-+....+|.|...+.+.+ .+.|.
T Consensus 464 ~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 464 DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence 1111111223444 344455567899999999999999877666666556677888998888755 44433
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.4e-11 Score=120.72 Aligned_cols=308 Identities=20% Similarity=0.165 Sum_probs=214.1
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHh----cCChHHHHHHHccccCCCcchhhh
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD----NGALSHLVNLLKRHMDSNCSRAVN 179 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~----~~~l~~L~~lL~~~~~~~~~~~~~ 179 (715)
++|.|.++|.+++. ...+.|..+|.+++ ++++.-+.-.. .-.+|.++++.+++++
T Consensus 129 lLp~L~~~L~s~d~------------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp-------- 188 (885)
T KOG2023|consen 129 LLPQLCELLDSPDY------------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP-------- 188 (885)
T ss_pred HHHHHHHHhcCCcc------------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--------
Confidence 68899999999887 77889999999999 66554332111 1257888999998876
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
.++..|+.|+-.+.......- .+.-...++.+..+..+.+++||+..|.++..|..-.++ +-.-.-.++++.++...+
T Consensus 189 kiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tq 266 (885)
T KOG2023|consen 189 KIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQ 266 (885)
T ss_pred hHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHcc
Confidence 899999999988764222211 122234667788888899999999999999999853222 111122467777888888
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHH---cCChHHHHhhhccC---------------------------------
Q 005088 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGALQPVIGLLSSC--------------------------------- 303 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~g~l~~L~~ll~~~--------------------------------- 303 (715)
+.+++|...||.....++... - +..++. ..++|.|+.-+.-.
T Consensus 267 d~dE~VALEACEFwla~aeqp-i-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~ 344 (885)
T KOG2023|consen 267 DVDENVALEACEFWLALAEQP-I-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH 344 (885)
T ss_pred CcchhHHHHHHHHHHHHhcCc-C-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc
Confidence 889999999999999997653 3 333332 35666666544210
Q ss_pred -----------------------ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005088 304 -----------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (715)
Q Consensus 304 -----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l 360 (715)
++.+|+-.+.+|.-++..-.+. +. .-++|.|-+.|.+.++.+|+.++.+|+.+
T Consensus 345 ~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~~W~vrEagvLAlGAI 420 (885)
T KOG2023|consen 345 GNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSEEWKVREAGVLALGAI 420 (885)
T ss_pred cCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcchhhhhhhhHHHHHHH
Confidence 1345555555555554321111 11 12356666667778999999999999999
Q ss_pred HHHHHHHHHhc--CChHHHHHhhccCChhHHHHHHHHHHhccCC---CchhhHHHhhccccccccchhhhhhhhhHHHHH
Q 005088 361 AQVITAGIAHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 435 (715)
Q Consensus 361 ~~~~~~~l~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 435 (715)
+++.-+.++.. ..++.|+++|.++.+-||...||+|...+.. .+..+.|
T Consensus 421 AEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-------------------------- 474 (885)
T KOG2023|consen 421 AEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-------------------------- 474 (885)
T ss_pred HHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--------------------------
Confidence 99883333322 4688899999999999999999999998643 1111111
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 436 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 436 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
..++..|++.+-+++..||++||.++..+-.
T Consensus 475 ---------~pvL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 475 ---------KPVLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred ---------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1256677788888999999999999988843
No 44
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.32 E-value=4.3e-10 Score=115.35 Aligned_cols=366 Identities=15% Similarity=0.139 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
...++.++..+... ....+...+.+..+..... +.+....+.+.+.++.|+++|..++. ..++.
T Consensus 50 ~GAv~~Ll~L~s~e----~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~-----------~~~le 114 (678)
T KOG1293|consen 50 LGAVELLLALLSLE----DGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDS-----------LNVLE 114 (678)
T ss_pred hcchHHHHhhcccc----CCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcch-----------HhHHH
Confidence 44555555555433 2233345566666666665 56777888999999999999998882 18999
Q ss_pred hHHHHHHhhc-CChhhH--HHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHH
Q 005088 135 GSAFALGLLA-VKPEHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~ 211 (715)
..++++..+. .++..- .......+++.+..++..... .....-+....++|. .+..+......|..+.
T Consensus 115 ~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk--------~~~~l~~~~~a~~s~-~~~hq~Il~Na~i~ek 185 (678)
T KOG1293|consen 115 KTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK--------YISRLDVSRAAHLSS-TKDHQLILCNAGILEK 185 (678)
T ss_pred HHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh--------hhhhhhhhhhccccc-cchhhheeccccchhh
Confidence 9999999998 332221 122223345555555552222 444455555566664 4466667777888888
Q ss_pred HHHhhccCCHHHHHHHHHHHH---HHhcCChhhHHHH----HhCCChH--HHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005088 212 LVELLEFTDTKVQRAAAGALR---TLAFKNDENKNQI----VECNALP--TLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~~----~~~g~l~--~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
+.-++...+..+|.+|+.+++ ++...++.....+ .+.|+.+ .+.+++++++...+-.++.++.++...+..
T Consensus 186 I~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~ 265 (678)
T KOG1293|consen 186 INILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFN 265 (678)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccc
Confidence 877777777889999999999 7776666554333 3455555 566677777777777777777666543300
Q ss_pred ------------H---------H------------------------------HHHHHcCChHHHHhhhc----------
Q 005088 283 ------------I---------K------------------------------KEVLAAGALQPVIGLLS---------- 301 (715)
Q Consensus 283 ------------~---------~------------------------------~~~~~~g~l~~L~~ll~---------- 301 (715)
+ + ....+...++.+.+++.
T Consensus 266 ~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~ 345 (678)
T KOG1293|consen 266 YDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDE 345 (678)
T ss_pred ccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcch
Confidence 0 0 00000111111111111
Q ss_pred ------------------------------------------cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHH
Q 005088 302 ------------------------------------------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (715)
Q Consensus 302 ------------------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 339 (715)
..+...+..|+.++.+++..-...+..+-...++.+|+
T Consensus 346 ~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv 425 (678)
T KOG1293|consen 346 KYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV 425 (678)
T ss_pred hhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 12334445555555555432222222244467889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhcccc
Q 005088 340 EMLQSPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 416 (715)
Q Consensus 340 ~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~ 416 (715)
+++..++..+...+.++|+|++... +..+...|+++.+..++.+.++.++..+.|+|+++.-+.+....+.-
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~----- 500 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL----- 500 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-----
Confidence 9999999999999999999999877 99999999999999999999999999999999999755433222111
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q 005088 417 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 476 (715)
Q Consensus 417 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 476 (715)
...-....++.+.+++++.||.++...|.|+..+
T Consensus 501 --------------------------~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 501 --------------------------LAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred --------------------------HHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 0111234577788999999999999999999665
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=4.6e-11 Score=102.69 Aligned_cols=117 Identities=37% Similarity=0.505 Sum_probs=109.8
Q ss_pred HHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005088 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
+.+.|+++.+++++.++++.++..++++|.+++..++.....+.+.|+++.++.++.++++.++..++++|++++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987788899999999999999999999999999999999999988777
Q ss_pred HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHh
Q 005088 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (715)
....+.+.|+++.+++++.+.+.+++..++++|.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7788888999999999999999999999999999986
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.30 E-value=5.4e-11 Score=102.22 Aligned_cols=117 Identities=28% Similarity=0.416 Sum_probs=109.5
Q ss_pred HHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcc
Q 005088 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 245 ~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
+.+.|+++.++.++.+++..++..++++|++++..++.....+.+.|+++.++.++.+.++.++..++++|+|++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999998888889999999999999999999999999999999999987777
Q ss_pred hhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
....+.+.|+++.|++.+.+.+..+++.++++|.+|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7777888999999999999999999999999999986
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.8e-10 Score=115.28 Aligned_cols=259 Identities=17% Similarity=0.212 Sum_probs=202.8
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc--ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
.+.+++.-|+.. .|+..|.+++.-|+.+.. +++....+--.-.+|.|+.+|+.... .++...
T Consensus 168 k~kkLL~gL~~~-----~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~ 231 (1051)
T KOG0168|consen 168 KAKKLLQGLQAE-----SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLL 231 (1051)
T ss_pred HHHHHHHhcccc-----CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHH
Confidence 444454444443 367778889888888655 55555444445689999999998776 399999
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
|+++|.+++ .-|.....+++.++||.|+.-|-.-.- .++.+.++.+|-.++..++. .+...|++...+.
T Consensus 232 AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Iey-------iDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Ls 301 (1051)
T KOG0168|consen 232 ACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEY-------IDVAEQSLQALEKISRRHPK---AILQAGALSAVLS 301 (1051)
T ss_pred HHHHHHHHHhhccchhheeecccchHHHHHhhhhhhh-------hHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHH
Confidence 999999999 889999999999999999987765433 39999999999999876654 5778999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc---CChhHHHHHHHc
Q 005088 215 LLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAA 290 (715)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~ 290 (715)
++.--...+++.|+.+..|+|..- ++.-..++ ..+|.|..+|...+......++-++..++. +.++.-+.+...
T Consensus 302 ylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~ 379 (1051)
T KOG0168|consen 302 YLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH 379 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence 998777889999999999999632 22223334 369999999999998888888888888853 456667788889
Q ss_pred CChHHHHhhhccC----ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC
Q 005088 291 GALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (715)
Q Consensus 291 g~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~ 344 (715)
|++....+++.-. +..+.......+..++++.+.....+.+.++...|..+|..
T Consensus 380 dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 380 DLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 9999999998754 23455566778888888888888888888998888888854
No 48
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.7e-07 Score=101.49 Aligned_cols=334 Identities=18% Similarity=0.145 Sum_probs=220.4
Q ss_pred chhHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCc
Q 005088 49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (715)
Q Consensus 49 ~~~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~ 127 (715)
..........+|.++..+....... |......++.+|..++.. |....... ..++...+++.++.+.
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~~--d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l--------- 261 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQDG--DDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKEL--------- 261 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhcc--chHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccc---------
Confidence 3444556778888999988887765 444567888888888874 54433322 1356677777776655
Q ss_pred cchHHHhhHHHHHHhhc-CChhhHHHHHh--cCChHHHHHHHccccCCC--------cchhhhHHHHHHHHHHHHHhccC
Q 005088 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVD--NGALSHLVNLLKRHMDSN--------CSRAVNSVIRRAADAITNLAHEN 196 (715)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-~~~~~~~~i~~--~~~l~~L~~lL~~~~~~~--------~~~~~~~~~~~a~~~L~~L~~~~ 196 (715)
+..+|..|+.+|..++ .-|...+.... ...++.++.++.....+. +......-...|..+|-.++.+=
T Consensus 262 -~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L 340 (1075)
T KOG2171|consen 262 -ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL 340 (1075)
T ss_pred -cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC
Confidence 4499999999999999 54443333222 234555555554332220 00000123445666666666433
Q ss_pred ccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005088 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (715)
Q Consensus 197 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (715)
+.. .+-.-.++.+-.++.++++.-|.+++.+|+.++.+......... ..+++..+..++++++.||..|+.+++.+
T Consensus 341 ~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 341 GGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred Chh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 221 11223456777888999999999999999999987655444333 35788888999999999999999999999
Q ss_pred hcCChhHHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH-HHHHHhCCCCHHHHHHHH
Q 005088 277 VHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSA 354 (715)
Q Consensus 277 ~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-~L~~~L~~~~~~v~~~a~ 354 (715)
+.+-....+.-....+++.|+..+.+. ++.+...|+.++-|+....+.....-.-.+++. .+..++.++.+.+++.++
T Consensus 417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 876555555556677888899888865 579999999999999865554433333245555 344455778999999999
Q ss_pred HHHHHhHHHHHHHHHh--cCChHHHHHhhccCC----hhHHHHHHHHHHhc
Q 005088 355 FALGRLAQVITAGIAH--NGGLVPLLKLLDSKN----GSLQHNAAFALYGL 399 (715)
Q Consensus 355 ~~L~~l~~~~~~~l~~--~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l 399 (715)
.+|+..+...+..+.. ...++.|...|...+ ..+|.....++.-+
T Consensus 497 taIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 497 TAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 9999998877333322 245667777775433 33444444444444
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.7e-10 Score=107.10 Aligned_cols=192 Identities=21% Similarity=0.225 Sum_probs=168.6
Q ss_pred hccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-C
Q 005088 67 NTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V 145 (715)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~ 145 (715)
...+..++.+.+-+..|+.-|..++.+-++...++..|+...++.++++++. .+|..|+|+++.++ +
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qN 154 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQN 154 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhc
Confidence 3334444567778899999999999988888999999999999999999988 99999999999999 9
Q ss_pred ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc--CCHHH
Q 005088 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKV 223 (715)
Q Consensus 146 ~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v 223 (715)
+|..+..+.+.|+++.|+..+.+.++. .++..|+.+++.+..+++.....+...+|...|...+++ .+..+
T Consensus 155 NP~~Qe~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~l 227 (342)
T KOG2160|consen 155 NPKSQEQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKL 227 (342)
T ss_pred CHHHHHHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHH
Confidence 999999999999999999999977664 888999999999999999999999999999999999998 56778
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
+..++..+..|...+......+...++...+..+....+.++...++.++..+.
T Consensus 228 krK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 228 KRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 899999999999877777777777788888888888888888888888777664
No 50
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.25 E-value=7.2e-10 Score=122.10 Aligned_cols=399 Identities=21% Similarity=0.215 Sum_probs=261.7
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHH
Q 005088 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (715)
Q Consensus 61 ~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L 140 (715)
-.+..+...+..+ ++.++..|+++++++. +++.... .++.+.+++.++++ .||..|+.++
T Consensus 79 l~~n~l~kdl~~~--n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~------------~VRk~A~~~l 138 (526)
T PF01602_consen 79 LIINSLQKDLNSP--NPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSP------------YVRKKAALAL 138 (526)
T ss_dssp HHHHHHHHHHCSS--SHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSH------------HHHHHHHHHH
T ss_pred HHHHHHHHhhcCC--CHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCch------------HHHHHHHHHH
Confidence 3455555555443 7778999999999987 4443333 37888999998887 9999999999
Q ss_pred Hhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC
Q 005088 141 GLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (715)
Q Consensus 141 ~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 219 (715)
.++. .+|+... .. .++.+.++|.+.+. .++..|+.++..+ ..++.... -.....+..|.+++...
T Consensus 139 ~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~ 204 (526)
T PF01602_consen 139 LKIYRKDPDLVE---DE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDP 204 (526)
T ss_dssp HHHHHHCHCCHH---GG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCC
T ss_pred HHHhccCHHHHH---HH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhccccc
Confidence 9999 7666521 12 48889999977664 8999999999998 22222111 11123445666666788
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhh
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 299 (715)
++-++..++.+|..++..++..... ...++.+..++.+.++.|...++.++..+.... . .-..+++.+..+
T Consensus 205 ~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~l 275 (526)
T PF01602_consen 205 DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKL 275 (526)
T ss_dssp SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHH
Confidence 9999999999999998655544421 346778888888889999999999999985432 2 234468889999
Q ss_pred hccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHH
Q 005088 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPL 377 (715)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L 377 (715)
+.+.++.++..++..|..++...+ ..+. .....+..+ .+++..++..++..|..++... ... +++.|
T Consensus 276 L~s~~~nvr~~~L~~L~~l~~~~~---~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~-----Il~eL 344 (526)
T PF01602_consen 276 LSSSDPNVRYIALDSLSQLAQSNP---PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE-----ILDEL 344 (526)
T ss_dssp HTSSSHHHHHHHHHHHHHHCCHCH---HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH-----HHHHH
T ss_pred hhcccchhehhHHHHHHHhhcccc---hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh-----HHHHH
Confidence 998899999999999999986541 1122 222333344 4789999999999999999766 322 46678
Q ss_pred HHhh-ccCChhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHH--HHhhhhHHHHHH
Q 005088 378 LKLL-DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE--KIHGRVLNHLLY 453 (715)
Q Consensus 378 ~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~ 453 (715)
...+ ...+..++..++..++.++.. +......++ -.++.+....... ...++.....-+.. .....++..|+.
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~-~l~~ll~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~l~~L~~ 421 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD-TLLKLLEISGDYV--SNEIINVIRDLLSNNPELREKILKKLIE 421 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH-HHHHHHHCTGGGC--HCHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH-HHHHhhhhccccc--cchHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 8888 445888999999999999743 222222211 1111111100000 01111111111111 113446788888
Q ss_pred HHhh-hhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 454 LMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 454 ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.+.+ .++.++..++++++..+...+... .....+..+.+.....++.+|.....++..+....
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 8876 477889999999999865533300 11233455666666677789988888888888764
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.24 E-value=1.7e-09 Score=119.13 Aligned_cols=351 Identities=21% Similarity=0.264 Sum_probs=245.9
Q ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH
Q 005088 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (715)
+...+.-+--.+..+.. +++.... ++..+.+=|.++++ .++..|++++++++ +++....
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~-- 114 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP-- 114 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH--
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH--
Confidence 55555555556666666 4552222 36677777877777 89999999999988 4444333
Q ss_pred hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
.++.+.+++.++++ .++..|+.++.++...+++.-. .. .++.+..++.++++.++..|+.++..+
T Consensus 115 ---l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 ---LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 46788889988775 9999999999999976665322 22 578999999999999999999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHH
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (715)
..++.....+. ...++.|.+++...++-.+..++++|..++...+..... ..+++.+..++.+.++.+..+++.+
T Consensus 180 -~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 180 -KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp -HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHH
Confidence 22333211111 234556666667889999999999999997765554311 4467888888888889999999999
Q ss_pred HHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhh-ccCChhHHHHHH
Q 005088 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLL-DSKNGSLQHNAA 393 (715)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~ 393 (715)
+..+... +. .-..+++.|..++.++++.++..++..|..++......+. .....+..+ .+.+..++..++
T Consensus 255 i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 255 IIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp HHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHHHHHHHCSSSHHHHHHHH
T ss_pred HHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhhhheecCCCChhHHHHHH
Confidence 9988532 22 2245678999999999999999999999999876623332 223333444 488999999999
Q ss_pred HHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHHHHHHh
Q 005088 394 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAH 472 (715)
Q Consensus 394 ~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~ 472 (715)
.+|..++... +... +++.|.+.+.+. +++++..++.+++.
T Consensus 326 ~lL~~l~~~~-n~~~--------------------------------------Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 326 DLLYKLANES-NVKE--------------------------------------ILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp HHHHHH--HH-HHHH--------------------------------------HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHhhccccc-chhh--------------------------------------HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 9999998432 2222 455666777443 77788888888888
Q ss_pred hcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 473 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 473 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
++....... .-.+..+++++..++..+...+...+.++..+.
T Consensus 367 la~~~~~~~----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 367 LAEKFPPDA----EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp HHHHHGSSH----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred HHhccCchH----HHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 865432111 124677888888777777888888888877653
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=9.4e-10 Score=112.41 Aligned_cols=316 Identities=16% Similarity=0.151 Sum_probs=198.7
Q ss_pred chhHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhH-HHHH-h---cCChHHHHhhhcCCCCccccc
Q 005088 49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVV-NWIV-E---GGAVPALVKHLQAPPTSEADR 123 (715)
Q Consensus 49 ~~~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~-~---~g~v~~L~~lL~~~~~~~~~~ 123 (715)
......+....|.+.+.|.+. +...++-|..+|..++.++... ..-+ . .-.+|.++++.+++++
T Consensus 120 ~~~~~~wpelLp~L~~~L~s~------d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp----- 188 (885)
T KOG2023|consen 120 TGGLQHWPELLPQLCELLDSP------DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP----- 188 (885)
T ss_pred ccccccchhHHHHHHHHhcCC------cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh-----
Confidence 344455655566666665544 3345788999999999864322 1101 0 2368999999999988
Q ss_pred CCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhH
Q 005088 124 NLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (715)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (715)
.+|..|+.++.... ..++.-.. .-...+..+..+-.+.++ +++...|.+|..|..-.+. +-.
T Consensus 189 -------kiRs~A~~cvNq~i~~~~qal~~-~iD~Fle~lFalanD~~~--------eVRk~vC~alv~Llevr~d-kl~ 251 (885)
T KOG2023|consen 189 -------KIRSHAVGCVNQFIIIQTQALYV-HIDKFLEILFALANDEDP--------EVRKNVCRALVFLLEVRPD-KLV 251 (885)
T ss_pred -------hHHHHHHhhhhheeecCcHHHHH-HHHHHHHHHHHHccCCCH--------HHHHHHHHHHHHHHHhcHH-hcc
Confidence 99999999999987 33322111 111234444444444443 9999999999999853322 111
Q ss_pred HHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhh----------cCC-C-------
Q 005088 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILML----------RSE-D------- 262 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll----------~~~-~------- 262 (715)
-.-.+.++.++...++.+++|...||.....++. .+..+..+.. ..++|.|+.-+ ++. +
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 1123556677777788899999999999999996 5655555443 24566665422 200 0
Q ss_pred --------------------------------------HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC
Q 005088 263 --------------------------------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 304 (715)
Q Consensus 263 --------------------------------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 304 (715)
-.+|+..+.+|.-|+.--. +.+. .-++|.|-+.|.+..
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL-~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELL-PILLPLLKEHLSSEE 406 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHH-HHHHHHHHHHcCcch
Confidence 1244444444444422111 1111 113555556666778
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHhh--cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHH--HHhcCChHHHHH
Q 005088 305 SESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAG--IAHNGGLVPLLK 379 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~--l~~~~~l~~L~~ 379 (715)
+.+++.+..+++.++.+.-+ -++. ..++|.|+++|.+..+.||.-.||+|+..+..- +.. -.-..++..+++
T Consensus 407 W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 99999999999999865322 2222 136788899999999999999999999887655 111 111123444555
Q ss_pred hhccCChhHHHHHHHHHHhcc
Q 005088 380 LLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 380 ll~~~~~~v~~~a~~~L~~l~ 400 (715)
.+-+++..||++||.++..+-
T Consensus 484 ~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHH
Confidence 557889999999999988774
No 53
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.19 E-value=1.4e-08 Score=103.30 Aligned_cols=318 Identities=14% Similarity=0.193 Sum_probs=218.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhc-----CChHHHHhhhcCCCCcccccCCCccch
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEG-----GAVPALVKHLQAPPTSEADRNLKPFEH 130 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-----g~v~~L~~lL~~~~~~~~~~~~~~~~~ 130 (715)
..+..++..|... ...++....+..+..+.. ++.....+.+. ....+++.+|...+.
T Consensus 53 ~y~~~~l~ll~~~-----~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~------------ 115 (429)
T cd00256 53 QYVKTFVNLLSQI-----DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ------------ 115 (429)
T ss_pred HHHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch------------
Confidence 3344455555443 244567788888888877 45555555543 567788889987665
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
-+...++..|..+. .++.........-.++.+...++..++. ..+..++.+|..+.. .+..|..+.+.+++
T Consensus 116 ~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-------~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v 187 (429)
T cd00256 116 FIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-------DYVQTAARCLQMLLR-VDEYRFAFVLADGV 187 (429)
T ss_pred hHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-------chHHHHHHHHHHHhC-CchHHHHHHHccCH
Confidence 89999999999998 4433211111111233445555544322 777888899999986 67788888888999
Q ss_pred HHHHHhhccC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCC------
Q 005088 210 PPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSS------ 280 (715)
Q Consensus 210 ~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~------ 280 (715)
+.|+.+|+.. +..++..++-+++-|+. ++.........+.++.++.+++.. .+.+.+-++.+|.|+...+
T Consensus 188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 188 PTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 9999999752 56889999999999997 455556667789999999999875 6788899999999997642
Q ss_pred hhHHHHHHHcCChHHHHhhhcc--CChHHHHHHHHH-------HHHHh----------cC----Cc---------chhHH
Q 005088 281 PNIKKEVLAAGALQPVIGLLSS--CCSESQREAALL-------LGQFA----------AT----DS---------DCKVH 328 (715)
Q Consensus 281 ~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~a~~~-------L~~l~----------~~----~~---------~~~~~ 328 (715)
......++..|+++.+-.+... .|+++....-.. +..++ ++ +| ++...
T Consensus 267 ~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~k 346 (429)
T cd00256 267 KTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADR 346 (429)
T ss_pred hhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHH
Confidence 2244566677776655544433 244443322111 11111 00 11 22222
Q ss_pred Hhhc--CChHHHHHHhC-CCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 329 IVQR--GAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 329 ~~~~--~~l~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
+-+. .++..|+++|. +.++.+...||.=|+.++.+. +..+.+.|+=..+++++.+++++|+..|+.++..|.
T Consensus 347 f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 347 LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3332 35678888884 567888888999999999887 566666788888999999999999999999998774
No 54
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.18 E-value=7.5e-10 Score=108.44 Aligned_cols=271 Identities=17% Similarity=0.151 Sum_probs=207.6
Q ss_pred HHHHhCCChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc-CChHHHHHHHHHHHHHh
Q 005088 243 NQIVECNALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFA 319 (715)
Q Consensus 243 ~~~~~~g~l~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~ 319 (715)
+.+...|+++.|++++..++. .++..|.+.|..+.. .+++..+...| +..++.+... ...+..+..+.+|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 445567899999999999865 569999999998853 35556666666 6666666553 34788899999999999
Q ss_pred cCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhccCChhHHHHHHHH
Q 005088 320 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 395 (715)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 395 (715)
.++++....++..|+++.++-+.+..+|.+.++++.+|+|++.+. ++.+++..+.+.|..+..+.+.-.+..||.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999888 7888999999999988888899999999999
Q ss_pred HHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 396 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 396 L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
.+.++.+.+.-..+.++|.+.........+. ....+.+.... ........+++|+++|.+...+.|..++.-++.=+.
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~D-P~~FARD~hd~-aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAa 408 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLD-PGRFARDAHDY-AQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAA 408 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccC-cchhhhhhhhh-hccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 9999999888888888776543332222111 11222222111 122244678999999998877777766665554322
Q ss_pred --CC-ccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 476 --PD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 476 --~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.. .-.++|.+-|.|+.|.++.++++..-...|..+|.-+...-
T Consensus 409 IKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 409 IKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 22 24566677799999999999999888888999998887754
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=99.10 E-value=1.6e-07 Score=103.36 Aligned_cols=352 Identities=14% Similarity=0.059 Sum_probs=229.7
Q ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH
Q 005088 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (715)
+.+.+.-.--.+.+.+. +++..-. ++..+.+=++++++ .+|..|+++|+++-. ++...
T Consensus 81 d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~-~~i~e--- 139 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRV-SSVLE--- 139 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCc-HHHHH---
Confidence 44455555555555555 3443211 35666666777666 899999999988863 22221
Q ss_pred hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
-.++.+.+.+.+.++ -|+..|+.++.++...+++ .+.+.|.++.|..++.+.++.|..+|+.+|..+
T Consensus 140 --~l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 140 --YTLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred --HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 135666777776665 9999999999999865554 334567888999999999999999999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHH
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (715)
...++..- -...+.+..|+..+.+.++=.+...+.+|....-.++.. ...++..+...|++.++.|..+|+.+
T Consensus 207 ~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e-----~~~il~~l~~~Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 207 NDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES-----AETLLTRVLPRMSHQNPAVVMGAIKV 279 (746)
T ss_pred HHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 86544321 122344566777776667767777777775542221111 12457778888888899999999999
Q ss_pred HHHHhcCC-cchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHH
Q 005088 315 LGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAA 393 (715)
Q Consensus 315 L~~l~~~~-~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 393 (715)
+.++.... +.....+. ..+.+.++.+ .+++++++-.++..|..+.......+ ... +..+.-..+++. .|+...+
T Consensus 280 il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf-~~~-~~~Ff~~~~Dp~-yIK~~KL 354 (746)
T PTZ00429 280 VANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLL-RTN-LDSFYVRYSDPP-FVKLEKL 354 (746)
T ss_pred HHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHH-HHH-HHhhhcccCCcH-HHHHHHH
Confidence 99986432 22111111 1233556665 45688899988888876665443322 221 333333334444 4899999
Q ss_pred HHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 005088 394 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 473 (715)
Q Consensus 394 ~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 473 (715)
.+|..|+... |... ++..|..+..+.+.+++..+.++++.+
T Consensus 355 eIL~~Lane~-Nv~~--------------------------------------IL~EL~eYa~d~D~ef~r~aIrAIg~l 395 (746)
T PTZ00429 355 RLLLKLVTPS-VAPE--------------------------------------ILKELAEYASGVDMVFVVEVVRAIASL 395 (746)
T ss_pred HHHHHHcCcc-cHHH--------------------------------------HHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 9999998543 3333 334566677788889999999999999
Q ss_pred cCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 474 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
+...+.. ...++..|.+++..+.. +...++.++.++.+.
T Consensus 396 A~k~~~~----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 396 AIKVDSV----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HHhChHH----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 7654321 23567788888876443 444677777777664
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.1e-08 Score=96.90 Aligned_cols=184 Identities=23% Similarity=0.289 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
+-++.|+.-|..++. +-.+...+...||+..++..+++++..+|..|+++|+.+++.||..+..+.+.|+++.|+..+.
T Consensus 98 e~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 98 EDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 667778888888875 5566777889999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc--CChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH
Q 005088 260 SE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (715)
Q Consensus 260 ~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 336 (715)
++ +..++..|+.+++.+..+++.....+...++...|..++++ .+...++.++..+..+..........+...++-.
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 75 55788999999999999999988999999999999999998 5678889999999999877666666566667777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 337 PLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 337 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
.+..+....+.++++.+..++..+....
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 7777778889999999988887766544
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.1e-06 Score=92.27 Aligned_cols=343 Identities=15% Similarity=0.115 Sum_probs=220.4
Q ss_pred HHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh-cC
Q 005088 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EG 207 (715)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g 207 (715)
.....|..+++.++ .-|.. ..|.|+..|.+.-.+... ..+++.++.+|+++|.+-.+- ..... ..
T Consensus 105 ~~~s~Aaq~va~IA~~ElP~n--------~wp~li~~lv~nv~~~~~---~~~k~~slealGyice~i~pe-vl~~~sN~ 172 (859)
T KOG1241|consen 105 RRPSSAAQCVAAIACIELPQN--------QWPELIVTLVSNVGEEQA---SMVKESSLEALGYICEDIDPE-VLEQQSND 172 (859)
T ss_pred CccchHHHHHHHHHHhhCchh--------hCHHHHHHHHHhcccccc---hHHHHHHHHHHHHHHccCCHH-HHHHHHhH
Confidence 55557777777777 33333 355555555443221111 168899999999999644332 11111 23
Q ss_pred CcHHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005088 208 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 208 ~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
++..++.-.. .++..+|..|+.+|.+-..-...+ ....-..-++++.+..-+++|.+++..|+.+|..+..-.-+..
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 356789999999998766311111 1111122355677778888999999999999999965444444
Q ss_pred HHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcc----------------hhHHH--hhcCChHHHHHHhCC--
Q 005088 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD----------------CKVHI--VQRGAVRPLIEMLQS-- 344 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~--~~~~~l~~L~~~L~~-- 344 (715)
..-.....+..-+.-+.+.+.++...+...-+++|...-+ ..... .-.+++|.|+++|..
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 4444555677777788888899988888877777742111 00000 012567888888843
Q ss_pred -----CCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccc
Q 005088 345 -----PDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ 419 (715)
Q Consensus 345 -----~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~ 419 (715)
+++....+|..+|.-++...+..++. .+++.+-+-++++++.-+..|+.+++.+...++.....
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt---------- 401 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLT---------- 401 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhh----------
Confidence 34667888888888777655444443 45555555678899999999999999987665422110
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc--cchhhhcCCcHHHHHHHhc
Q 005088 420 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLG 497 (715)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~ 497 (715)
..-.+.++.++.++.++...++..++++|+.++..-. .-........++.+.+=+.
T Consensus 402 ----------------------~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 402 ----------------------PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred ----------------------HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 0122367889999999999999999999999976533 1111122233344433333
Q ss_pred CCCcchhhhhHHHHHHhhhhcc
Q 005088 498 STNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 498 ~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+.|.+...++|++.+|+...+
T Consensus 460 -DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 460 -DEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred -hCchHHHHHHHHHHHHHHHHH
Confidence 689999999999999998643
No 58
>PTZ00429 beta-adaptin; Provisional
Probab=99.02 E-value=1.5e-07 Score=103.66 Aligned_cols=360 Identities=17% Similarity=0.107 Sum_probs=235.8
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHH-HHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
+.++-+.|.+. +...+..++. .+..++.+.+... +.+..+.++.+.+. +++..+.
T Consensus 34 ~~ELr~~L~s~------~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~------------elKKLvY 89 (746)
T PTZ00429 34 GAELQNDLNGT------DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDL------------ELKKLVY 89 (746)
T ss_pred HHHHHHHHHCC------CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCH------------HHHHHHH
Confidence 44444555433 3334566665 4555555533322 35667778877776 8999999
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 216 (715)
-.+.+.+ .+++..-. ++..+.+=+.+.++ .++..|+.+++++.. +..- .-.++.+.+.+
T Consensus 90 LYL~~ya~~~pelalL-----aINtl~KDl~d~Np--------~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L 149 (746)
T PTZ00429 90 LYVLSTARLQPEKALL-----AVNTFLQDTTNSSP--------VVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAV 149 (746)
T ss_pred HHHHHHcccChHHHHH-----HHHHHHHHcCCCCH--------HHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHh
Confidence 9999998 56664221 25566666665554 888888888888752 2222 23456778888
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHH
Q 005088 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (715)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L 296 (715)
.+.++.||+.|+.++..+...+++ .+.+.|.++.|..++.+.++.|...|+.+|..+...++.. .-...+.+..+
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~L 224 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRL 224 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHH
Confidence 999999999999999999865553 3345678899999999999999999999999997654432 12234456667
Q ss_pred HhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcC
Q 005088 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNG 372 (715)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~ 372 (715)
+..+.+.++-.+...+.+|... .+...... ..++..+...|++.++.|.-.|+.++.+++... ..... ..
T Consensus 225 l~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~r 298 (746)
T PTZ00429 225 VYHLPECNEWGQLYILELLAAQ---RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VR 298 (746)
T ss_pred HHHhhcCChHHHHHHHHHHHhc---CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HH
Confidence 7777666655666666666442 23222221 346778888899999999999999999887542 11111 11
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH
Q 005088 373 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 452 (715)
Q Consensus 373 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 452 (715)
....++.+ .+++++++..++..|.-+....+ .+.. . -+..+.
T Consensus 299 l~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P---~lf~---------------------------------~-~~~~Ff 340 (746)
T PTZ00429 299 VNTALLTL-SRRDAETQYIVCKNIHALLVIFP---NLLR---------------------------------T-NLDSFY 340 (746)
T ss_pred HHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH---HHHH---------------------------------H-HHHhhh
Confidence 22445555 45677888888887766653221 1111 0 011222
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 453 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 453 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
-..+++. .++...+.+|..++...+...+ +.-|.+...+.+.+++..+..++.+++.+.
T Consensus 341 ~~~~Dp~-yIK~~KLeIL~~Lane~Nv~~I------L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 341 VRYSDPP-FVKLEKLRLLLKLVTPSVAPEI------LKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred cccCCcH-HHHHHHHHHHHHHcCcccHHHH------HHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 2223333 5899999999999877665554 345667777888899999999999999864
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.4e-07 Score=99.62 Aligned_cols=219 Identities=19% Similarity=0.206 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHH
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (715)
....+|.++.+|... .+.+++..|+++|.+++. -|.....+++.|+||.|++-|..-.-. +|-
T Consensus 209 v~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-----------DvA 272 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHE-----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-----------DVA 272 (1051)
T ss_pred HHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-----------HHH
Confidence 455667777777655 467899999999999999 588889999999999999777654331 899
Q ss_pred hhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCcHH
Q 005088 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPP 211 (715)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~ 211 (715)
++++.+|-.|+ .++ .++.+.|++...+.+|+-... ..++.|+.+..|.|..- ++--..++ ..+|.
T Consensus 273 EQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPl 339 (1051)
T KOG0168|consen 273 EQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFVM--EALPL 339 (1051)
T ss_pred HHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHHH--HHHHH
Confidence 99999999999 554 356889999999999987765 89999999999999532 22222333 58999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHH
Q 005088 212 LVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
|..+|...+....+.++.++..++.. .+..-+.+...|.+.....++.-. +..+....++.|..++.+.+-..
T Consensus 340 L~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~ 419 (1051)
T KOG0168|consen 340 LTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLF 419 (1051)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHH
Confidence 99999999999999999999988853 355566778889999888888653 34566677888889988888888
Q ss_pred HHHHHcCChHHHHhhhcc
Q 005088 285 KEVLAAGALQPVIGLLSS 302 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~ 302 (715)
..+.+.++...|..+|..
T Consensus 420 ~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 420 RTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHhhHHHHHHHHHhc
Confidence 888888888888888864
No 60
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.93 E-value=6e-09 Score=99.20 Aligned_cols=141 Identities=26% Similarity=0.359 Sum_probs=117.8
Q ss_pred eeecchHHHHhhccHHHHHhhcCCCCCCCCC----ceecCCCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhChh-
Q 005088 557 RRFYAHRICLLASSDAFRAMFDGGYREKDAR----DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLE- 631 (715)
Q Consensus 557 ~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~----~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~- 631 (715)
..++||..+++ |++||+.||.|+|.|++.+ ...++.....+.+..++|+|+++.++.++-+.+++.+|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 44999999998 9999999999999985422 35566777899999999999999999999999999999999765
Q ss_pred -h-HHHHHHHHHHhc---CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHH
Q 005088 632 -G-LKRLCEYTIAQD---ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 698 (715)
Q Consensus 632 -~-L~~~~~~~l~~~---i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 698 (715)
. |+..+...|.+. ++.-++.+++.+++.....+|..++..|++.|+..+...++|.+..+.+.+.+.
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ri~ 451 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPRIP 451 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccchhh
Confidence 2 555555555544 455678999999999999999999999999999999999999887666555443
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.93 E-value=2.8e-07 Score=90.28 Aligned_cols=343 Identities=15% Similarity=0.180 Sum_probs=221.7
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh------cCCcHHHHHhhccCCHHHHHHHHHHHH
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGALR 232 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (715)
+..++.+++....+ +....++..+..+.+.+...-..+.. .-.....+.++...+.-+...+.+++.
T Consensus 67 v~~fi~LlS~~~kd-------d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 67 VKTFINLLSHIDKD-------DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHhchhhhH-------HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHH
Confidence 45566666555443 55556666665555433332222211 123567888898888888887888888
Q ss_pred HHhcCChhhHHHHHhCC-ChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-c-CChHHH
Q 005088 233 TLAFKNDENKNQIVECN-ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-S-CCSESQ 308 (715)
Q Consensus 233 ~L~~~~~~~~~~~~~~g-~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~-~~~~~~ 308 (715)
.++...+.... ..+.. ....|-..+.+ .+.+....++++|..+... ++.+..++...++..++..+. + .+..++
T Consensus 140 ~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 140 KLACFGNCKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred HHHHhcccccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence 88752222110 00000 12233344555 5677788889999998665 567778888888888888883 3 357899
Q ss_pred HHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---------HHHHHhcCChHHHH
Q 005088 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---------TAGIAHNGGLVPLL 378 (715)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---------~~~l~~~~~l~~L~ 378 (715)
.+.+.+++-++. ++...+.+...+.++.|.+++++ ....|-+-++.++.|+.... ...++..++.+.+-
T Consensus 218 YqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 218 YQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 999999999975 45555666778999999999977 56778889999999998766 23455555555554
Q ss_pred Hhhcc--CChhHHHHHHHHHHhccCC-------CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHH
Q 005088 379 KLLDS--KNGSLQHNAAFALYGLADN-------EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 449 (715)
Q Consensus 379 ~ll~~--~~~~v~~~a~~~L~~l~~~-------~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (715)
.+... .++++....-..-..|-.+ ++....+ ..|.++ ....+........+...+... .-.++.
T Consensus 297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl-~sG~L~-----WSP~Hk~e~FW~eNa~rlnen-nyellk 369 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSEL-RSGRLE-----WSPVHKSEKFWRENADRLNEN-NYELLK 369 (442)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HhCCcC-----CCccccccchHHHhHHHHhhc-cHHHHH
Confidence 44422 3455544433333333211 1111111 122211 111222233344444444332 234789
Q ss_pred HHHHHHhhh-hhhHHHHHHHHHHhhcC-CCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 450 HLLYLMRVA-EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 450 ~L~~ll~~~-~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.|+.+|..+ +|.+..-||.=++.... .|+++.++.+-||-+.+.+++++++++|+..|..|+..|+.+.
T Consensus 370 iL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 370 ILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 999999988 48888889998998865 5779999888999999999999999999999999999888764
No 62
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.3e-07 Score=93.64 Aligned_cols=331 Identities=15% Similarity=0.163 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
...-|+.+++.+.+.. -.+-+..|+++|..+++. +|..+. ..++++|++.|+.+.. |+++..
T Consensus 20 ~aETI~kLcDRvessT-----L~eDRR~A~rgLKa~srk--YR~~Vg-a~Gmk~li~vL~~D~~----------D~E~ik 81 (970)
T KOG0946|consen 20 AAETIEKLCDRVESST-----LLEDRRDAVRGLKAFSRK--YREEVG-AQGMKPLIQVLQRDYM----------DPEIIK 81 (970)
T ss_pred HHhHHHHHHHHHhhcc-----chhhHHHHHHHHHHHHHH--HHHHHH-HcccHHHHHHHhhccC----------CHHHHH
Confidence 4455788888887763 233478889999877753 555444 4568999999988766 459999
Q ss_pred hHHHHHHhhc-CCh--------h--------hHHHHH-hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC
Q 005088 135 GSAFALGLLA-VKP--------E--------HQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196 (715)
Q Consensus 135 ~a~~~L~~l~-~~~--------~--------~~~~i~-~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~ 196 (715)
.++.++.++. .+. . ..+.++ ..+.|..++..+...+- .++..++..|.++....
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALLSCR 153 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHHhcC
Confidence 9999999988 321 1 122222 45788899999988775 89999999999998544
Q ss_pred -ccchhHHHh-cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC----CHHHHHHHH
Q 005088 197 -SSIKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----DSAIHYEAV 270 (715)
Q Consensus 197 -~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~----~~~v~~~a~ 270 (715)
.+.+..+.. +-+|..++.+|.+..+-+|..++..|..|+.+++..+..++-.++...|..++..+ ..-|...|+
T Consensus 154 ~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL 233 (970)
T KOG0946|consen 154 PTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL 233 (970)
T ss_pred CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 455665554 56899999999998899999999999999998888888888788999999999763 235889999
Q ss_pred HHHHHhhcCChhHHHHHHHcCChHHHHhhhcc---CC-----hHH-----HHHHHHHHHHHhcCC------cchhHHHhh
Q 005088 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---CC-----SES-----QREAALLLGQFAATD------SDCKVHIVQ 331 (715)
Q Consensus 271 ~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~---~~-----~~~-----~~~a~~~L~~l~~~~------~~~~~~~~~ 331 (715)
..|.||...+..+...+.+.+.+|.|.++|.. ++ |.. ...++.++..+...+ ..++..+..
T Consensus 234 ~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 234 ILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 99999999888888888899999999988753 12 221 223455555554321 134456777
Q ss_pred cCChHHHHHHhCCC--CHHHHHHHHHHHHHhHHHH---HHHHHhcC----------ChHHHHHhhcc-CChhHHHHHHHH
Q 005088 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVI---TAGIAHNG----------GLVPLLKLLDS-KNGSLQHNAAFA 395 (715)
Q Consensus 332 ~~~l~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~---~~~l~~~~----------~l~~L~~ll~~-~~~~v~~~a~~~ 395 (715)
.+++..|..++-++ ..+++..+..++++..+.. +..+.+.. ++-.++.+..+ .....|.++.++
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 89999999998765 4678889999999998887 44443321 11123333333 456778888888
Q ss_pred HHhc-cCCCchhhHHHh
Q 005088 396 LYGL-ADNEDNVADFIR 411 (715)
Q Consensus 396 L~~l-~~~~~~~~~l~~ 411 (715)
+..+ ..+.+....++.
T Consensus 394 f~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 394 FRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHhcchhhHHHHHH
Confidence 8766 566666666554
No 63
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.9e-07 Score=93.59 Aligned_cols=420 Identities=13% Similarity=0.064 Sum_probs=246.4
Q ss_pred HhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhH--
Q 005088 75 ADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ-- 150 (715)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~-- 150 (715)
+|.+++..|+.+|..+.. .-+.-...+.......-+.-+++.+. +|..++...-.++| ..-+..
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d------------eValQaiEFWsticeEEiD~~~e 296 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND------------EVALQAIEFWSTICEEEIDLAIE 296 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999987 44554445555566777777787776 99999999999998 221110
Q ss_pred -HHHH---------------hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 151 -QLIV---------------DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 151 -~~i~---------------~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
.... -.+++|.|+++|...+++.+ ...|.....|..||.-++.-.. ..++ ..++|.+-+
T Consensus 297 ~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d-~DdWnp~kAAg~CL~l~A~~~~---D~Iv-~~Vl~Fiee 371 (859)
T KOG1241|consen 297 YGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDD-DDDWNPAKAAGVCLMLFAQCVG---DDIV-PHVLPFIEE 371 (859)
T ss_pred HHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcc-cccCcHHHHHHHHHHHHHHHhc---ccch-hhhHHHHHH
Confidence 0001 12578889999977544322 2346777777777777764111 1112 144555555
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH-HHHHcCCh
Q 005088 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGAL 293 (715)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~l 293 (715)
-+++++..-+..+..+++.+-.+.+..+..-...++++.++.++.++.--++..+.|+|+.++...++.+. .....+.+
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 66788999999999999999977666666666678999999999988888999999999999877664322 22234556
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhcCCcchhH-----HHhhcCChHHHHHHh----CC---CCHHHHHHHHHHHHHhH
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-----HIVQRGAVRPLIEML----QS---PDVQLREMSAFALGRLA 361 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~~~l~~L~~~L----~~---~~~~v~~~a~~~L~~l~ 361 (715)
..++..|.+ .|.+..+++|++.+++....+... .... ...+.++.-| .. .+...|..|-.+|..+.
T Consensus 452 ~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI 529 (859)
T KOG1241|consen 452 SALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI 529 (859)
T ss_pred HHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 666666665 488999999999999832211110 0111 2233333322 22 45779999999999998
Q ss_pred HHHHH--HHHhcCChHHHHH----hhc---------cCChhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhh-
Q 005088 362 QVITA--GIAHNGGLVPLLK----LLD---------SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFI- 424 (715)
Q Consensus 362 ~~~~~--~l~~~~~l~~L~~----ll~---------~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~- 424 (715)
..+.+ +-.-.+....+.. .++ .+-.+++..-|.+|..+.+. ........+ .....+.+....
T Consensus 530 k~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~ 608 (859)
T KOG1241|consen 530 KNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESK 608 (859)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCC
Confidence 87711 1111122222211 121 11245666667777666432 112222111 111111111111
Q ss_pred ----hhhhhh-HHHHHHHHHHHHH---hhhhHHHHHHHH-hhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHH
Q 005088 425 ----VQATKD-CVAKTLKRLEEKI---HGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 495 (715)
Q Consensus 425 ----~~~~~~-~~~~~~~~~~~~~---~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~l 495 (715)
.+.... .+......+...+ -..+.|.|..-| +..+..|...|.+.++.++..-+......-.+....|++.
T Consensus 609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 111111 1111223333322 223334444444 3346778888888999998776655555555677888888
Q ss_pred hcCCC--cchhhhhHHHHHHh
Q 005088 496 LGSTN--PKQQLDGAVALFKL 514 (715)
Q Consensus 496 l~~~~--~~~~~~aa~~L~~L 514 (715)
|.+++ .+++-....+...+
T Consensus 689 Lss~~~hR~vKP~IlS~FgDI 709 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDI 709 (859)
T ss_pred ccCccccccccchHHHHHHHH
Confidence 88744 33444443443333
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.1e-06 Score=90.27 Aligned_cols=287 Identities=15% Similarity=0.184 Sum_probs=216.3
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (715)
-|+.|+.-+.+.... +=|+.|++.|-.++ ..+|..+... ++++++..|..+..+ .++...
T Consensus 23 TI~kLcDRvessTL~-----------eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D------~E~ik~ 82 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLL-----------EDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMD------PEIIKY 82 (970)
T ss_pred HHHHHHHHHhhccch-----------hhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCC------HHHHHH
Confidence 367777777666551 66778888888887 3455555544 588999999776543 389999
Q ss_pred HHHHHHHHhccCc------cch----------h-HHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChh-hHHHH-
Q 005088 185 AADAITNLAHENS------SIK----------T-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQI- 245 (715)
Q Consensus 185 a~~~L~~L~~~~~------~~~----------~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~- 245 (715)
++.++.++..+++ ..+ + .+...+.|..++..+...|..||..++..|.++....+. .+..+
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999987553 111 1 233467888999999999999999999999999875543 34444
Q ss_pred HhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC---C-hHHHHHHHHHHHHHhcC
Q 005088 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---C-SESQREAALLLGQFAAT 321 (715)
Q Consensus 246 ~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~---~-~~~~~~a~~~L~~l~~~ 321 (715)
...-++..|+.+|.+..+.+|..++-.|..++.+++...+.+.-.+++..|+.++... + .-|...++..+-|+...
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999998877777788999999999753 2 34677888899999988
Q ss_pred CcchhHHHhhcCChHHHHHHhCC---CC-----HHH-----HHHHHHHHHHhHHHH---------HHHHHhcCChHHHHH
Q 005088 322 DSDCKVHIVQRGAVRPLIEMLQS---PD-----VQL-----REMSAFALGRLAQVI---------TAGIAHNGGLVPLLK 379 (715)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~L~~---~~-----~~v-----~~~a~~~L~~l~~~~---------~~~l~~~~~l~~L~~ 379 (715)
+..++..+.+.+.+|.|.++|.. .+ +.- ...++.++..++..+ ++.+...+++..|+.
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 88999999999999999988743 22 111 124455555555433 568888999999999
Q ss_pred hhccC--ChhHHHHHHHHHHhccCCC-chhhHHHh
Q 005088 380 LLDSK--NGSLQHNAAFALYGLADNE-DNVADFIR 411 (715)
Q Consensus 380 ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~l~~ 411 (715)
++-++ ...|+..+..++.+..+.. .+...|.+
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 88554 5788999999999987653 34445554
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.86 E-value=3.6e-07 Score=90.03 Aligned_cols=276 Identities=21% Similarity=0.237 Sum_probs=202.1
Q ss_pred hHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcc
Q 005088 96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCS 175 (715)
Q Consensus 96 ~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 175 (715)
.+..+...|++..|+.++..++.. ..|+.+|.+.|-.+.. .++++.+...| +..++.+-+...+.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~e----------t~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~--- 236 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLE----------TSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPV--- 236 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcH---
Confidence 346677789999999999998872 2779999999988762 34566666666 67777776655543
Q ss_pred hhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHH
Q 005088 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (715)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L 254 (715)
+..+..+.+|.++..++++....++..|++..++..++..++.+.+.++-+|.|++.. ..+.+..+++..+.+.|
T Consensus 237 ----e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWL 312 (832)
T KOG3678|consen 237 ----ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWL 312 (832)
T ss_pred ----HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999863 34567778888889999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCC
Q 005088 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (715)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (715)
..+..+.|+-.+..||-+++.|+. +.+.-..+.++|.+..+-.++...++..-.. --...+.+. -..-
T Consensus 313 F~LA~skDel~R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~ 380 (832)
T KOG3678|consen 313 FPLAFSKDELLRLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDD 380 (832)
T ss_pred hhhhcchHHHHHHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHH
Confidence 999888899999999999999965 4666677777887776655665555432111 000011110 0124
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-----HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC
Q 005088 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVI-----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 335 l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 402 (715)
++.|+.+|.+..-+.+-.++.-++.=+.-. .+.+.+-|++..|-++..+++..-...|..+|.-+...
T Consensus 381 LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 381 LQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 677888887665555544443333222111 45666779999999999888887777788888777543
No 66
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.7e-06 Score=89.94 Aligned_cols=394 Identities=17% Similarity=0.180 Sum_probs=243.2
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 62 lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
+...|+..++.+ +..++-.|+-+|++++.-+-.|. ..|-.-++|+..++ -+|..|+.|..
T Consensus 108 ltNslknDL~s~--nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~------------~irKKA~Lca~ 167 (866)
T KOG1062|consen 108 LTNSLKNDLNSS--NQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDP------------YIRKKAALCAV 167 (866)
T ss_pred HHHHHHhhccCC--CeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence 445555555544 56677888888888876544443 36777788888777 89999999999
Q ss_pred hhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc--
Q 005088 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-- 218 (715)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-- 218 (715)
.+. ..|+.... .++...++|.+.+. -+....+..+..+|..+++.-..+.+ .++.|+..|+.
T Consensus 168 r~irK~P~l~e~-----f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 168 RFIRKVPDLVEH-----FVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT 232 (866)
T ss_pred HHHHcCchHHHH-----hhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 988 77776433 45667777776654 66667777888888777666555554 66666666641
Q ss_pred -------------CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC------CHHHHHHHHHHHHHhhcC
Q 005088 219 -------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHS 279 (715)
Q Consensus 219 -------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~------~~~v~~~a~~~L~~L~~~ 279 (715)
++|-++...++.|+-|.++++...+.+.+ .|.+..... ...+...++.++..+ ..
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I-~~ 306 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDI-RS 306 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhc-cC
Confidence 35788999999999999876666555543 233444321 246788888888887 33
Q ss_pred ChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005088 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (715)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~ 359 (715)
++..+.. ++..|-+.|.+.+..++.-|+..|......++...+... ..++++|+++|..+++.|...+..
T Consensus 307 ~~~Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~ 376 (866)
T KOG1062|consen 307 NSGLRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYA 376 (866)
T ss_pred CchHHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3333222 466777888888888888888888888766655433332 578889999999999999999888
Q ss_pred hHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC--CchhhHHHhhccccccccchhhhhhhhhHHHHHH
Q 005088 360 LAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 436 (715)
Q Consensus 360 l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~ 436 (715)
|.... -.. .+..|+.+|.+.++..+...+.-+..++.. |+++..+-...- .|......++.+ ..
T Consensus 377 lvn~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~--Vl~~aG~~V~~d------v~ 443 (866)
T KOG1062|consen 377 LVNESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLK--VLKTAGDFVNDD------VV 443 (866)
T ss_pred HhccccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHhcccccchh------hH
Confidence 87655 222 234677788777888888888877777643 333322111000 000000000000 00
Q ss_pred HHHHHHH-------hhhhHHHHHH------HHhhhhhhHHHHHHHHHHhhc---CCC---ccchhhhcCCcHHHHHHHhc
Q 005088 437 KRLEEKI-------HGRVLNHLLY------LMRVAEKGVQRRVALALAHLC---SPD---DQRTIFIDGGGLELLLGLLG 497 (715)
Q Consensus 437 ~~~~~~~-------~~~~l~~L~~------ll~~~~~~v~~~a~~aL~~l~---~~~---~~~~~~~~~~~i~~L~~ll~ 497 (715)
.++-.++ +...+.+|-. ++.-+.+.+...|.|+|+.-. .++ +.-....+...+..|..++.
T Consensus 444 ~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~ 523 (866)
T KOG1062|consen 444 NNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLM 523 (866)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHH
Confidence 0000000 0000111111 112234555667777777543 111 12222234567778887776
Q ss_pred C--CCcchhhhhHHHHHHhhhhcc
Q 005088 498 S--TNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 498 ~--~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+ .+..++.+|..||..|+....
T Consensus 524 ~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 524 SHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred hccchHHHHHHHHHHHHHHHhhcc
Confidence 5 446788899999998888643
No 67
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.85 E-value=2.9e-06 Score=83.36 Aligned_cols=317 Identities=14% Similarity=0.189 Sum_probs=213.6
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHh-------cCChHHHHhhhcCCCCcccccCCCccch
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE-------GGAVPALVKHLQAPPTSEADRNLKPFEH 130 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~g~v~~L~~lL~~~~~~~~~~~~~~~~~ 130 (715)
.+..++.++... ...+....++..+..+.+....+..+.. .-.-+..+.+|...+.
T Consensus 66 ~v~~fi~LlS~~-----~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~------------ 128 (442)
T KOG2759|consen 66 YVKTFINLLSHI-----DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDT------------ 128 (442)
T ss_pred HHHHHHHHhchh-----hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCCh------------
Confidence 344444444443 2233456666677776664444433322 2235678889988877
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
-+.....++++.++ .++..-......=....|-..+.+..++ +....+++||..+.. .++.|..+...+++
T Consensus 129 ~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~-------~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~ 200 (442)
T KOG2759|consen 129 FIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNN-------DYIQFAARCLQTLLR-VDEYRYAFVIADGV 200 (442)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCC-------chHHHHHHHHHHHhc-CcchhheeeecCcc
Confidence 78888999999998 3332211000000123344445553332 777788899999987 67788888889999
Q ss_pred HHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCh-----
Q 005088 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSP----- 281 (715)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~----- 281 (715)
..++..+. ..+..++...+.+++.|+. ++...+.+...+.++.|..++++. .+.|.+-++.++.|+....+
T Consensus 201 ~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~ 279 (442)
T KOG2759|consen 201 SLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETK 279 (442)
T ss_pred hhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHH
Confidence 99999884 3457899999999999997 676667777889999999999876 67888999999999987664
Q ss_pred -hHHHHHHHcCChHHHHhhhcc--CChHHHHHHHHHHH-------HHhcC--------------Cc---------chhHH
Q 005088 282 -NIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLG-------QFAAT--------------DS---------DCKVH 328 (715)
Q Consensus 282 -~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~-------~l~~~--------------~~---------~~~~~ 328 (715)
+....++..++.+.+-.+-.. .++++....-..-. .+++. +| ++...
T Consensus 280 k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~r 359 (442)
T KOG2759|consen 280 KDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADR 359 (442)
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHH
Confidence 344566666666655544433 23444333222111 11111 11 22222
Q ss_pred Hhh--cCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 329 IVQ--RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 329 ~~~--~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
+-+ ..++..|+.+|.. .+|.+-..||.=++...++. +..+.+.||-..+++++++.+++|+..|+.|+-.|.
T Consensus 360 lnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 360 LNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 322 2467889999976 56888888999999999888 666777899999999999999999999999987764
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.83 E-value=7.5e-08 Score=97.15 Aligned_cols=222 Identities=19% Similarity=0.228 Sum_probs=158.5
Q ss_pred ChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHH------cCChHHHHhhhccCChHHHHHHHHHHHHHhcC
Q 005088 250 ALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (715)
Q Consensus 250 ~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 321 (715)
....++++++. .++++...++..+..+....+...+.+.. ......++.++..++.-+...++..+..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 34555565554 58899999999999998887776666554 23678888888889999999999999999876
Q ss_pred CcchhHHHhhcCChHHHHHHhCC----CCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhh-----c--cCChhH
Q 005088 322 DSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLL-----D--SKNGSL 388 (715)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~L~~----~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll-----~--~~~~~v 388 (715)
.+....... .+.++.+++++.+ ++..++..|+.+|.++.... +..+++.++++.+.+++ . ..+.++
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 655444322 4556778877754 45667789999999999887 99999999999999999 2 335778
Q ss_pred HHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHH
Q 005088 389 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVA 467 (715)
Q Consensus 389 ~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~ 467 (715)
+..++.++|-|+-+++....+...+ +++.|+++++.. ...|.+-++
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~---------------------------------~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKY---------------------------------LIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTS---------------------------------HHHHHHHHHHH--SHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccc---------------------------------hHHHHHHHHHhcccchHHHHHH
Confidence 8999999999999888777776655 456677777765 678999999
Q ss_pred HHHHhhcCCCc--cchhhhcCCcHHHHHHHhcC--CCcchhh
Q 005088 468 LALAHLCSPDD--QRTIFIDGGGLELLLGLLGS--TNPKQQL 505 (715)
Q Consensus 468 ~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~~--~~~~~~~ 505 (715)
.++.|+..... ....|+..|+++.+..+.+. +++++..
T Consensus 262 a~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 262 AILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 99999987766 77888887888877777765 5555544
No 69
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=8.6e-08 Score=103.18 Aligned_cols=269 Identities=16% Similarity=0.115 Sum_probs=208.5
Q ss_pred hhhhhhhccccCCCCCchhHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHh
Q 005088 33 QMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVK 111 (715)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~ 111 (715)
++-..++.+|....+.+.+.......+|-+++.|.+- ..+.+|+..|+.... ++........-|+.|..++
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQLPiVLQVLLSQ--------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQLPIVLQVLLSQ--------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHhcchHHHHHHHH--------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 3444556677766666655555666777777777743 357888888888877 7888888889999999999
Q ss_pred hhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHH
Q 005088 112 HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190 (715)
Q Consensus 112 lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~ 190 (715)
||+++.. +++..-+.+-.+|. .++.|+..+++.++-..+++.|...... +.+-+..|+.+|.
T Consensus 520 LLQS~a~------------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~-----~~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 520 LLQSSAR------------ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAI-----PPEQRTMAAFVLA 582 (1387)
T ss_pred HhccchH------------hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCC-----CHHHHHHHHHHHH
Confidence 9999988 88887777777777 7899999999999999999988874321 1377889999999
Q ss_pred HHhccCccchhHHHhcCCcHHHHHhhccC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHH
Q 005088 191 NLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269 (715)
Q Consensus 191 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a 269 (715)
.++.+..-.+....+.+.+...+..+.++ .+-++..++.+|+.|-++.+..+-.=.+.++.+.|..+|.++-++||..|
T Consensus 583 viv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAA 662 (1387)
T KOG1517|consen 583 VIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAA 662 (1387)
T ss_pred HHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHH
Confidence 99987777777777788888888888885 68899999999999999888888887888999999999999999999999
Q ss_pred HHHHHHhhcC----ChhHHHHH------------HHcCCh---HHHHhhhccCChHHHHHHHHHHHHHhcCCcchh
Q 005088 270 VGVIGNLVHS----SPNIKKEV------------LAAGAL---QPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (715)
Q Consensus 270 ~~~L~~L~~~----~~~~~~~~------------~~~g~l---~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 326 (715)
+.+|+.+... .++....+ ++.-+. -.++.++++.++-++.+.+-+|..+..+.....
T Consensus 663 VFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 663 VFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 9999999654 22221111 111111 256667778888888888888888876554443
No 70
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.79 E-value=2.2e-05 Score=84.50 Aligned_cols=412 Identities=18% Similarity=0.173 Sum_probs=224.9
Q ss_pred cchHHhHHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChh
Q 005088 71 SWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE 148 (715)
Q Consensus 71 ~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 148 (715)
...+.|.++++.|..+++.+..+ +.....+ ...++.|++-|+.. -.|..|++++..++.++-
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE--------------iTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE--------------ITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch--------------hHHHHHHHHHHHHHhccc
Confidence 33456888999999998887663 1111111 23466777776553 568889999999994442
Q ss_pred -hHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHH
Q 005088 149 -HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA 227 (715)
Q Consensus 149 -~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a 227 (715)
.-..-.-..+++.+..+++.... .++...+.++-.|.......-..-.-.-++..+..++..++-.+...|
T Consensus 642 ~i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a 713 (1233)
T KOG1824|consen 642 DIDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLA 713 (1233)
T ss_pred eeehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22222334568888888887654 666666666666654222111111112234455566666777788889
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH---cCC-hHHHHhhhccC
Q 005088 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGA-LQPVIGLLSSC 303 (715)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~g~-l~~L~~ll~~~ 303 (715)
..+|..+....+..- ......+++.++.+++++- ++..++.++.++. +.++. .+. ...++.++..+
T Consensus 714 ~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f-------~alV~t~~~~l~y~~l~s~lt~P 783 (1233)
T KOG1824|consen 714 VAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPL--LQGGALSALLLFF-------QALVITKEPDLDYISLLSLLTAP 783 (1233)
T ss_pred HHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHH-------HHHHhcCCCCccHHHHHHHHcCC
Confidence 999998887544433 3444568899999998752 2333333333221 11111 111 33344444432
Q ss_pred C-----hHHHH----HHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 005088 304 C-----SESQR----EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITAGIAHNG 372 (715)
Q Consensus 304 ~-----~~~~~----~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~l~~~~ 372 (715)
- ..+.+ ..+.+.+.++...++.-. .....|+.-+.+ .+..++..|...++.+..+. ......+
T Consensus 784 V~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~-~~s~~~e 857 (1233)
T KOG1824|consen 784 VYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRK-DLSPQNE 857 (1233)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCC-CCCcchh
Confidence 1 11223 334444444433332111 122344443432 45667777777777776544 1111223
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHhccC-C-CchhhHHHhhccccc---------ccc----------------chhhh
Q 005088 373 GLVPLLKLLDSKNGSLQHNAAFALYGLAD-N-EDNVADFIRVGGVQK---------LQD----------------GEFIV 425 (715)
Q Consensus 373 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-~~~~~~l~~~~~i~~---------L~~----------------~~~~~ 425 (715)
.-..+++.+++++.+|+.+|..||++++. + +...+.+.+.-..++ |.. .+..+
T Consensus 858 ~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL 937 (1233)
T KOG1824|consen 858 LKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALL 937 (1233)
T ss_pred hHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34468888899999999999999999964 2 333333332111000 000 00000
Q ss_pred hhhhhHHH--------HHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhc
Q 005088 426 QATKDCVA--------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 497 (715)
Q Consensus 426 ~~~~~~~~--------~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~ 497 (715)
.....|.. ..+-.+.-.-....++.|-..+.++.+..+..+..++..........-.......+.....+++
T Consensus 938 ~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~ 1017 (1233)
T KOG1824|consen 938 FKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLR 1017 (1233)
T ss_pred HHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHh
Confidence 00011111 1111111112445667777777777777777777666655444332222223345777888999
Q ss_pred CCCcchhhhhHHHHHHhhhhccccc
Q 005088 498 STNPKQQLDGAVALFKLANKATTLS 522 (715)
Q Consensus 498 ~~~~~~~~~aa~~L~~L~~~~~~~~ 522 (715)
+++..||..|..++..-+.+.++..
T Consensus 1018 dpDl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred CCchhHHHHHHHHHHHHHccCHhHH
Confidence 9999999999999988877765443
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=8.8e-07 Score=83.15 Aligned_cols=293 Identities=16% Similarity=0.144 Sum_probs=190.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
..++.++.+.+|.++..|...+..++.. ..+... .+...++.+.+++.+.++ ...|+.+|.|++.. +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 3578899999999999999999999854 222222 223467888999987766 77899999999765 56667776
Q ss_pred HcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhh------cCChHHHHHHhCCC-C-HHHHHHHHHHHHHh
Q 005088 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-D-VQLREMSAFALGRL 360 (715)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~~L~~~-~-~~v~~~a~~~L~~l 360 (715)
.. ++..++..+.+.....-...+.++.|++..+......... .|.+.........+ + ..--...+..++||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 8888999988887788888999999998755444333322 33444444444332 2 12234566788899
Q ss_pred HHHH--HHHHHhcCChHH-HHHhhccCChhH-HHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHH
Q 005088 361 AQVI--TAGIAHNGGLVP-LLKLLDSKNGSL-QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 436 (715)
Q Consensus 361 ~~~~--~~~l~~~~~l~~-L~~ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~ 436 (715)
+... |..+.+...++. .+.-+.+.+..+ +...+++|.|+|-...+...+.. ..+..|-..+..+-+.
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagp-------- 230 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGP-------- 230 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCc--------
Confidence 8888 777766653322 222223444444 56788999999877766666555 2222221111100000
Q ss_pred HHHHHHHhhhhHHHHHHHHh-----hhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcC-CCcchhhhhHHH
Q 005088 437 KRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVA 510 (715)
Q Consensus 437 ~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~aa~~ 510 (715)
..+..---.++...| +++- .+++.++..-+.+|..|+....+|..+...|+.+++-++-+. ++++++..+-..
T Consensus 231 ee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 231 EELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred cccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence 000010111222222 4443 458999999999999999999999999999999998888776 667777666665
Q ss_pred HHHhhhhc
Q 005088 511 LFKLANKA 518 (715)
Q Consensus 511 L~~L~~~~ 518 (715)
...|....
T Consensus 310 vq~Lv~~e 317 (353)
T KOG2973|consen 310 VQMLVRLE 317 (353)
T ss_pred HHHHHhcc
Confidence 55555543
No 72
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.76 E-value=3e-06 Score=88.38 Aligned_cols=251 Identities=15% Similarity=0.095 Sum_probs=157.5
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhH--HHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCC
Q 005088 257 MLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (715)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (715)
.|++.++.+|..++..++.++..-... -+.+...| -+|...|....+++.-..+.++..+...-.-.+..---.++
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dl 884 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDL 884 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhh
Confidence 445566777777777777664311110 11222222 24667777778888888777777776432222111122578
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-----HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHH
Q 005088 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVI-----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 409 (715)
Q Consensus 335 l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 409 (715)
+|.|...|++....|++++...++.++..+ .+.++. +.--|+++|.+.+..+|.+|..+++.++.--...
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq--- 959 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ--- 959 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH---
Confidence 999999999999999999999999999877 222222 3345778888999999999999999997542211
Q ss_pred Hhhccccccccch-hhhhhhhhHHHHHHHHHHHH-HhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC-c-cchhhhc
Q 005088 410 IRVGGVQKLQDGE-FIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-D-QRTIFID 485 (715)
Q Consensus 410 ~~~~~i~~L~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~-~~~~~~~ 485 (715)
+++..|++.+ ...+..+.|..-+..-.... ..-.++|.|..=-+.++..||.-.+++++.+...- + ++..++
T Consensus 960 ---dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy- 1035 (1172)
T KOG0213|consen 960 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY- 1035 (1172)
T ss_pred ---HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-
Confidence 1222222211 12223334433222111111 12246677666666788899999999999885432 1 233221
Q ss_pred CCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 486 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 486 ~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
...|.|...+.+.+...|.-|+.++..|+-+..
T Consensus 1036 -av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1036 -AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred -HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 346777788888899999999999988887643
No 73
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.70 E-value=3.8e-07 Score=92.05 Aligned_cols=226 Identities=17% Similarity=0.228 Sum_probs=158.4
Q ss_pred ChHHHHhhhcCC-CCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHh------cCChHHHHHHHccccCCCcch
Q 005088 105 AVPALVKHLQAP-PTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD------NGALSHLVNLLKRHMDSNCSR 176 (715)
Q Consensus 105 ~v~~L~~lL~~~-~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~------~~~l~~L~~lL~~~~~~~~~~ 176 (715)
....++.+|+.. .. .++...++..+..+. +++.....+.. .....++++++..++.
T Consensus 56 ~~~~~l~lL~~~~~~-----------~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~----- 119 (312)
T PF03224_consen 56 YASLFLNLLNKLSSN-----------DDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS----- 119 (312)
T ss_dssp ------HHHHHH--------------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH-----
T ss_pred HHHHHHHHHHHccCc-----------HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH-----
Confidence 355666666654 22 288999999999999 77766666554 2257788887777654
Q ss_pred hhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 005088 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (715)
Q Consensus 177 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 252 (715)
-+...++.+|..+....+....... .+.++.++..+.+ ++.+++..++.+|.+|.. .+..+..+.+.++++
T Consensus 120 ---~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 120 ---FIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVS 194 (312)
T ss_dssp ---HHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHH
Confidence 8889999999999875554433211 3556777777654 445677899999999995 789999999999999
Q ss_pred HHHHhh------cC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHHHHHhcCCcc
Q 005088 253 TLILML------RS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 253 ~L~~ll------~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~ 324 (715)
.+..++ .. .+..+++.++.+++.|+.. ++....+...+.++.++++++.. .+++.+-+..++.|+....+.
T Consensus 195 ~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 195 PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 999999 22 3568899999999999654 67778888888999999999864 589999999999999876554
Q ss_pred -hhHHHhhcCChHHHHHHhCC--CCHHHHHH
Q 005088 325 -CKVHIVQRGAVRPLIEMLQS--PDVQLREM 352 (715)
Q Consensus 325 -~~~~~~~~~~l~~L~~~L~~--~~~~v~~~ 352 (715)
....++..|+++.+-.+... +|+++.+-
T Consensus 274 ~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 274 SNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp THHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 66667777776666666644 67777653
No 74
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.7e-06 Score=91.81 Aligned_cols=407 Identities=18% Similarity=0.143 Sum_probs=268.8
Q ss_pred HhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc---CChhhHH
Q 005088 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQ 151 (715)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~ 151 (715)
..+.++..++.-+++++..-.. .....+.++.+.++..+... .|+..|...+.++. +.+.
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd------------sVr~~a~~~~~~l~~l~~~~~--- 311 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD------------SVREAAVESLVSLLDLLDDDD--- 311 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh------------hHHHHHHHHHHHHHHhcCCch---
Confidence 3566777778888888774222 56778899999999998877 89999999988887 2331
Q ss_pred HHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHH
Q 005088 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (715)
Q Consensus 152 ~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L 231 (715)
-......+.+++..++... .++.........++..-.. .......++....++++...+.+..++.-.
T Consensus 312 -d~~~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~ 379 (759)
T KOG0211|consen 312 -DVVKSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKV 379 (759)
T ss_pred -hhhhhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcch
Confidence 1223356777777766543 6666666666666532111 112223466777788877777777776666
Q ss_pred HHHhcC-ChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHH
Q 005088 232 RTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (715)
Q Consensus 232 ~~L~~~-~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~ 310 (715)
..++.. +......+....+++.+-.+..+.+..++...+..+.++.--.+ ..-.-.-.++.++..+++..+.++..
T Consensus 380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~ln 456 (759)
T KOG0211|consen 380 QKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLN 456 (759)
T ss_pred HHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHh
Confidence 656542 22333445555668888888888899999988887777743222 11112346788888999999999999
Q ss_pred HHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHH
Q 005088 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQH 390 (715)
Q Consensus 311 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 390 (715)
..+.+..+-...+...........++.+..+-....+.++.+..+.+..++......+.....-+.+...+.+....++.
T Consensus 457 li~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~ 536 (759)
T KOG0211|consen 457 LIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIRE 536 (759)
T ss_pred hHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHH
Confidence 88877776554555555566677788888888777899999999999988877644444444555666667777788999
Q ss_pred HHHHHHHhccCCCchhhHHHhhccccccccchhh-hhhhhhHHHHHHHHHH-----HHHhhhhHHHHHHHHhhhhhhHHH
Q 005088 391 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLE-----EKIHGRVLNHLLYLMRVAEKGVQR 464 (715)
Q Consensus 391 ~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~l~~L~~ll~~~~~~v~~ 464 (715)
.|+..+..++..-. ........++.++..... ....+.....++..+. ..+...+++.+..+..++.++||.
T Consensus 537 ~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~ 614 (759)
T KOG0211|consen 537 AAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRI 614 (759)
T ss_pred HHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhh
Confidence 99988888763321 111222222222211110 0111111222222332 234677889999999999999999
Q ss_pred HHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 465 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 465 ~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
++++.|..+...-.... .+....|.+..+.++++.+++.+|..+..-+...
T Consensus 615 nvak~L~~i~~~L~~~~--~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 615 NVAKHLPKILKLLDESV--RDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hHHHHHHHHHhhcchHH--HHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 99999998865543322 2445678888888899999999888776655443
No 75
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.3e-06 Score=88.42 Aligned_cols=353 Identities=15% Similarity=0.131 Sum_probs=220.8
Q ss_pred cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 103 ~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
.+.+++.+..+.+.+. .++..|+..|.|++.-...........+...+.++..+.+. . .
T Consensus 83 ~~iv~Pv~~cf~D~d~------------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~--------~-V 141 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS------------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ--------N-V 141 (675)
T ss_pred HHhhHHHHHhccCccc------------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc--------c-c
Confidence 4578999999998888 89999999999998322222222333345555566555543 2 2
Q ss_pred HHHHHHHHHHhccCccchh-HHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC
Q 005088 183 RRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 261 (715)
+.++..+-.+..+-..-+. .+.-.+.+|.|-.-+...++..|.....-|..|-. .|...-.-.-..+++.|+..|.++
T Consensus 142 ~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 142 RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDS 220 (675)
T ss_pred ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCC
Confidence 3344444444421111111 23334556666666666788888888877777763 233221112245778899999999
Q ss_pred CHHHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHH
Q 005088 262 DSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 338 (715)
+++|+..+=.+++++-. +.|.. +--...++.++.-+.++++.++..|..-+..+....+.. ....-.|++..+
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~i 296 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAI 296 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhc
Confidence 99999777666666532 22211 112456888899999999999999988887776544333 223336777888
Q ss_pred HHHhCCCCHH-HHHHHHHH---HHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhh
Q 005088 339 IEMLQSPDVQ-LREMSAFA---LGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 412 (715)
Q Consensus 339 ~~~L~~~~~~-v~~~a~~~---L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 412 (715)
+..+.+.++. +++.+... +..+.... ...+--...+..+.+.+.+...+.+..++.-+..+-...++.- +.
T Consensus 297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~-- 373 (675)
T KOG0212|consen 297 LPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LV-- 373 (675)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hh--
Confidence 8888776653 44433322 22222222 2222223456778888888888888888888877754433221 11
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHH
Q 005088 413 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 492 (715)
Q Consensus 413 ~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L 492 (715)
....+...|+.-|.+++.+|...++..+.+++.+++.... ...+..|
T Consensus 374 ------------------------------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sL 420 (675)
T KOG0212|consen 374 ------------------------------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSL 420 (675)
T ss_pred ------------------------------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHH
Confidence 1234677788889999999999999999999998876522 1334455
Q ss_pred HHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 493 LGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 493 ~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
.++...+..-....+...+.+|+.-
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 5555566666667777777777663
No 76
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.4e-06 Score=76.80 Aligned_cols=305 Identities=15% Similarity=0.130 Sum_probs=207.5
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh----HHHHHhCCChHHHHHhh
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVECNALPTLILML 258 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~----~~~~~~~g~l~~L~~ll 258 (715)
..++.+|-.|....+... ...+..+.|-.-|..++..++..+|..+..+..+.+.+ ...++..|+++.++..+
T Consensus 61 tlcVscLERLfkakegah---lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAH---LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred hhHHHHHHHHHhhccchh---hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 346666766654222211 12344455555566788889999999999998765543 22345789999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh--hhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG--LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~--ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 336 (715)
..++.+|...|...|..++.. +.....++.+..++.+-. +-...+.-+|......+-.+.+.++.........|.+.
T Consensus 138 ggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld 216 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD 216 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence 999999999999999999765 444466666666554432 22233445667777888888888888877888899999
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhc--cCChhHHHHHHHHHHhccCCCchhhHHHh
Q 005088 337 PLIEMLQS-PDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFALYGLADNEDNVADFIR 411 (715)
Q Consensus 337 ~L~~~L~~-~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 411 (715)
.|..-|+. .|.-|+.++......|+... ++.+.+.|.++.+.+++. +.+|--...+....+.+...... -...+
T Consensus 217 lLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeai-mdvse 295 (524)
T KOG4413|consen 217 LLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAI-MDVSE 295 (524)
T ss_pred HHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHH-hhcCH
Confidence 99988877 77889999999999998877 888889999999999884 44454444555555555433211 00001
Q ss_pred hccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCc--H
Q 005088 412 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG--L 489 (715)
Q Consensus 412 ~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~--i 489 (715)
...|-+. --.+..-..++.+.+|+.+..|.-+++.+.++.++...+...|- .
T Consensus 296 ----------------eaiceal----------iiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaa 349 (524)
T KOG4413|consen 296 ----------------EAICEAL----------IIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAA 349 (524)
T ss_pred ----------------HHHHHHH----------HHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHH
Confidence 1111000 01234455677888999999999999999999888887766553 3
Q ss_pred HHHHHHhcCCC-cchhhhhHHHHHHhhhhc
Q 005088 490 ELLLGLLGSTN-PKQQLDGAVALFKLANKA 518 (715)
Q Consensus 490 ~~L~~ll~~~~-~~~~~~aa~~L~~L~~~~ 518 (715)
..++.-.-+.+ .--+..+..+|.+++...
T Consensus 350 ehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 350 EHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 33443333333 345667779999888764
No 77
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.5e-05 Score=74.03 Aligned_cols=337 Identities=15% Similarity=0.136 Sum_probs=213.8
Q ss_pred HHHhhHHHHHHhhc-CCh--hhH--HHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh
Q 005088 131 EVEKGSAFALGLLA-VKP--EHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~--~~~--~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (715)
.|+..++..++.+. +.. ... ..++..+.++.++..+...++ ++...|...+..++. .+..-..+..
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------eVAkAAiesikrial-fpaaleaiFe 167 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------EVAKAAIESIKRIAL-FPAALEAIFE 167 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence 78888999988888 333 222 234477899999999988776 999999999999986 4444455555
Q ss_pred cCCcHH--HHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh
Q 005088 206 EGGIPP--LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 206 ~g~i~~--L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
...... +..+....+.-++..+...+..+..-++........+|.+..|..-++. .|.-|+..++.....|+.. +.
T Consensus 168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eH 246 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EH 246 (524)
T ss_pred cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hh
Confidence 555533 3444444556677778888888887778877778889999988887766 5778888888888888654 34
Q ss_pred HHHHHHHcCChHHHHhhhccCC--hHHHHHHHHHHHHHhcCCcchhHHHhhc-------CChHHHHHHhCCCCHHHHHHH
Q 005088 283 IKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQR-------GAVRPLIEMLQSPDVQLREMS 353 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~~L~~~~~~v~~~a 353 (715)
.++.+.+.|+++.+..++...+ +--.-.+....+.+-. ..+...+... -++....+++..+|+..++.|
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmiEmnDpdaieaA 324 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA 324 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence 4567778899999999887443 3333334444444321 1111111111 123445566678999999999
Q ss_pred HHHHHHhHHHH-HHHHHhcCChHHHHHhh----ccCChhHHHHHHHHHHhccCCCchhhH-HHhhccccccccchhhhhh
Q 005088 354 AFALGRLAQVI-TAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQA 427 (715)
Q Consensus 354 ~~~L~~l~~~~-~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~-l~~~~~i~~L~~~~~~~~~ 427 (715)
..+++.+..+. ...+....+.|..-.++ +.+...-+..++.+|.+++..-...+. +.+-.....+
T Consensus 325 iDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerl--------- 395 (524)
T KOG4413|consen 325 IDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERL--------- 395 (524)
T ss_pred HHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHH---------
Confidence 99999998877 44444444444433333 333344567888888888654221111 1111111111
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhc-CCcHHHH
Q 005088 428 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELL 492 (715)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L 492 (715)
.|... ........-.-++.+...+..+.|+++.++.+++..++..+...+.+.. .+.+...
T Consensus 396 --rclif--daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiV 457 (524)
T KOG4413|consen 396 --RCLIF--DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIV 457 (524)
T ss_pred --HHHHH--HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeee
Confidence 11111 0111111113345667788888999999999999999988886665544 3444443
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.58 E-value=7.7e-05 Score=76.03 Aligned_cols=411 Identities=18% Similarity=0.138 Sum_probs=239.8
Q ss_pred HHhHHHHHHHHHHHHHHhc-------ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-C
Q 005088 74 EADRAAAKRATHVLAELAK-------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V 145 (715)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~ 145 (715)
+.+..++..|+.+|.+-.. .+..|.. .+...++..+.++. +++..+..+|.+|. -
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~mqvvceatq~~d~------------e~q~aafgCl~kim~L 251 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FMQVVCEATQGNDE------------ELQHAAFGCLNKIMML 251 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hheeeehhccCCcH------------HHHHHHHHHHHHHHHH
Confidence 3455677777777776221 1222222 23344455555555 99999999999988 4
Q ss_pred ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhH----------------HHhcCCc
Q 005088 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR----------------VRMEGGI 209 (715)
Q Consensus 146 ~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~----------------~~~~g~i 209 (715)
....-....+...-....+.+++.++ ++...++...+.+|.+.-+..-. ....+++
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvl 323 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVL 323 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHH
Confidence 44444444444445555667777766 88889998888888532211100 0123478
Q ss_pred HHHHHhhcc-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005088 210 PPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 210 ~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
|.|+.+|.. ++..+...|..+|--.++. ....+.+. ++..+-.-+++++-.-+..++.+++.+-.+..+
T Consensus 324 P~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 324 PELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 889998864 2345666676666666531 11222222 333333456677888899999999999776655
Q ss_pred HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHH-hC--CCCHHHHHHHHHHHHH
Q 005088 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQ--SPDVQLREMSAFALGR 359 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~-L~--~~~~~v~~~a~~~L~~ 359 (715)
.+..-+-...+|.+...+.+...-++..++|+++.++.+-+. .+-..+-++..++. +. .+.|.+..+++|..-|
T Consensus 400 ~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~n 476 (858)
T COG5215 400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKEN 476 (858)
T ss_pred HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHh
Confidence 555555567899999999988888999999999999853222 12223333333332 21 2578888899999999
Q ss_pred hHHHHHHHHH--h---cCChHHHHHhh------ccCChhHHHHHHHHHHhccCC-CchhhHHHhhcc----ccccccchh
Q 005088 360 LAQVITAGIA--H---NGGLVPLLKLL------DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGG----VQKLQDGEF 423 (715)
Q Consensus 360 l~~~~~~~l~--~---~~~l~~L~~ll------~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~----i~~L~~~~~ 423 (715)
++.+-.+... . ....+.++.-| ..++...|..+..+|+.|... ++....+.. |. ..+|-...
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl~~~i- 554 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKLDECI- 554 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHHHHH-
Confidence 9988711111 1 12223333322 234556777777777777432 222222111 11 01111100
Q ss_pred hhhh----------hhhHHHHHHHHHHHHH----------hhhhHHHHHHHHhhhhhh-HHHHHHHHHHhhcCCCccchh
Q 005088 424 IVQA----------TKDCVAKTLKRLEEKI----------HGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDDQRTI 482 (715)
Q Consensus 424 ~~~~----------~~~~~~~~~~~~~~~~----------~~~~l~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~~~~~ 482 (715)
.+.+ ..+.....+.-+..++ ...+++.++++|.+.++. +-.-...++++++.+-+-+..
T Consensus 555 sv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe 634 (858)
T COG5215 555 SVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFE 634 (858)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 0000 0001111111111111 334778888888887554 344566788888776666666
Q ss_pred hhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 483 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 483 ~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.+-...+|-|..-++..+..+-..|...+..|+...
T Consensus 635 ~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 635 QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 566778888888887777777777777777777643
No 79
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.57 E-value=5e-05 Score=77.33 Aligned_cols=386 Identities=14% Similarity=0.087 Sum_probs=233.5
Q ss_pred HhHHHHHHHHHHHHHHhc--ChhhHHHHHh--cC--------ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHh
Q 005088 75 ADRAAAKRATHVLAELAK--NEEVVNWIVE--GG--------AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (715)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~--~~~~~~~~~~--~g--------~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (715)
+.+..+..|.-+|.|-.. ++.......+ .| +=...++.|.++.+ ..-..|+.+++.
T Consensus 53 s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~ep------------r~~~~Aaql~aa 120 (858)
T COG5215 53 SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEP------------RFCTMAAQLLAA 120 (858)
T ss_pred CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCcc------------HHHHHHHHHHHH
Confidence 345566667777777543 3333222221 11 11123455566655 666677788877
Q ss_pred hcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC-cHHHHHh-hc-cC
Q 005088 143 LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPPLVEL-LE-FT 219 (715)
Q Consensus 143 l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~-i~~L~~l-l~-~~ 219 (715)
++.-+ .-.+..|-++..+.....+.. +....+.++.++++.|....+ ...+...+. +-.++.- ++ .+
T Consensus 121 IA~~E------lp~~~wp~lm~~mv~nvg~eq---p~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et 190 (858)
T COG5215 121 IARME------LPNSLWPGLMEEMVRNVGDEQ---PVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNET 190 (858)
T ss_pred HHHhh------CccccchHHHHHHHHhccccC---chHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCc
Confidence 77211 123455555555543322111 138899999999999953333 222333332 2333332 22 34
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~----~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~ 295 (715)
+..+|..++.+|.+-+. ..+..+.. .-++++.+..-+.++.+++..+..||..+..-.-...+...+.-....
T Consensus 191 ~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~al 267 (858)
T COG5215 191 TSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAAL 267 (858)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999887331 11111211 124556667777889999999999999996554455556666666777
Q ss_pred HHhhhccCChHHHHHHHHHHHHHhcCCcchhHH----------------HhhcCChHHHHHHhCC-------CCHHHHHH
Q 005088 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVH----------------IVQRGAVRPLIEMLQS-------PDVQLREM 352 (715)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~----------------~~~~~~l~~L~~~L~~-------~~~~v~~~ 352 (715)
....+.+.+.++...+...-+.+|...-+.... ..-.+++|.|+++|.. +++.+...
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 778888888888888877666666421111100 0113478899999843 45677888
Q ss_pred HHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHH
Q 005088 353 SAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV 432 (715)
Q Consensus 353 a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~ 432 (715)
|..+|--.+......+++. ++..+-+-+++.++.-+..|+.+++.....+. ..|.
T Consensus 348 A~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~------------------------~~~l 402 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPC------------------------EDCL 402 (858)
T ss_pred HHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCcc------------------------HHHH
Confidence 8888887776664444443 44445556688899999999999999875542 1121
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHH-Hh--cCCCcchhhhhHH
Q 005088 433 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG-LL--GSTNPKQQLDGAV 509 (715)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~-ll--~~~~~~~~~~aa~ 509 (715)
... -...+|.+..++.++.-.++..++++++.++..-. ..+-..+.++..++ .+ -.++|.+...+.|
T Consensus 403 T~~--------V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va--~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 403 TKI--------VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA--MIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred Hhh--------HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH--HhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 111 12357788888888888999999999999875422 11112232332221 11 2367888889999
Q ss_pred HHHHhhhhccc
Q 005088 510 ALFKLANKATT 520 (715)
Q Consensus 510 ~L~~L~~~~~~ 520 (715)
..-||..+...
T Consensus 473 ~~~nlv~h~a~ 483 (858)
T COG5215 473 RKENLVDHIAK 483 (858)
T ss_pred HHHhHHHhhhh
Confidence 99999987643
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.56 E-value=1.2e-05 Score=82.90 Aligned_cols=209 Identities=14% Similarity=0.022 Sum_probs=132.1
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
+..|+..+.+.++.++..+..+|..+-. .+..+.|..++.+.++.++..++.+++...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 5677777777777777777777765542 234566777777777777776666655531
Q ss_pred HcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 005088 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGI 368 (715)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l 368 (715)
....+.+..+|++.++.++..|+.+|+.+.. ...++.|...+.+.++.||..|++++..+..
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 1123456666777777777777777777642 2345566666777777777777777755532
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhH
Q 005088 369 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 448 (715)
Q Consensus 369 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (715)
...+..++.+...........+..++... . ....+
T Consensus 208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~------------------------------------------~~~a~ 242 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-G------------------------------------------GPDAQ 242 (410)
T ss_pred --HhHHHHHHHHHhccCccHHHHHHHHHHhC-C------------------------------------------chhHH
Confidence 12333444433333333333333333322 1 11256
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 449 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 449 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
+.|..+++++. ++..++.+++.+. ....++.|++.+.++. ++..|..++..++-
T Consensus 243 ~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 243 AWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 67888887765 8999999999874 4478889998887544 88899999988877
No 81
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=8.7e-06 Score=84.39 Aligned_cols=335 Identities=16% Similarity=0.089 Sum_probs=207.7
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (715)
+..++.-+..+.. .+++....||..+........ ..-+.+.+.+++......-+..+.+.++.+..+
T Consensus 98 ~~~~~~~~~tps~--------~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g- 164 (569)
T KOG1242|consen 98 IEILLEELDTPSK--------SVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNG- 164 (569)
T ss_pred HHHHHHhcCCCcH--------HHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-
Confidence 4445555554443 888888888887764222111 112456777888877778888999999999853
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCHHHHHH-HHHHHHHhhcCChhHHHHHHHcC---ChHHHHhhhccCChHHHHHHHHH
Q 005088 239 DENKNQIVECNALPTLILMLRSEDSAIHYE-AVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSSCCSESQREAALL 314 (715)
Q Consensus 239 ~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~-a~~~L~~L~~~~~~~~~~~~~~g---~l~~L~~ll~~~~~~~~~~a~~~ 314 (715)
.....+.+.+++..+.....+........ +..+.-..+..-. ...+.. .++.++..+.+..+.+|..+..+
T Consensus 165 -~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 165 -LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEA 239 (569)
T ss_pred -cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence 34455667788899999888865444332 2222221111100 111222 35555555566678888887777
Q ss_pred HHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHH
Q 005088 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNA 392 (715)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a 392 (715)
...+.+.-+.... ..+++.++.-+....+..+.+++..++.++... +-......++|.+.+.|.+..++++..+
T Consensus 240 ~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 240 AKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAG 315 (569)
T ss_pred HHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHH
Confidence 7666543222211 123455555555558888999999999888777 5566677899999999999999999999
Q ss_pred HHHHHhccCCCchhhHHHhhccccccccchhhhh-hhhhHHHHHH-----HHHHHHHhhhhHHHHHHHHhhhhhhHHHHH
Q 005088 393 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTL-----KRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 466 (715)
Q Consensus 393 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 466 (715)
..+|.+++.-.+|... . -.++.|++...... ....|..... .....-.-.-+++.|-+-++..+.++++.+
T Consensus 316 ~~~l~~~~svidN~dI-~--~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t 392 (569)
T KOG1242|consen 316 IETLLKFGSVIDNPDI-Q--KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKT 392 (569)
T ss_pred HHHHHHHHHhhccHHH-H--HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhH
Confidence 9999999765444331 1 12333333222222 2222322111 111111112244445555555688999999
Q ss_pred HHHHHhhcCCCccchhhh--cCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 467 ALALAHLCSPDDQRTIFI--DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 467 ~~aL~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
+.++.|++.--+....+. -...+|-|...+.+..|++|..++.+|..+..+.
T Consensus 393 ~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 393 AIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 999999987654433321 1245666777777789999999999998887754
No 82
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.50 E-value=2.3e-05 Score=82.02 Aligned_cols=257 Identities=17% Similarity=0.149 Sum_probs=165.4
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhH--HHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
+...+..|++.++ .+|.+|+..++.|+ .-..+. +.+...| -.|.+.|....+ ++.
T Consensus 801 ~stiL~rLnnksa------------~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeyp--------EvL 858 (1172)
T KOG0213|consen 801 CSTILWRLNNKSA------------KVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYP--------EVL 858 (1172)
T ss_pred HHHHHHHhcCCCh------------hHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccH--------HHH
Confidence 3455667777777 99999999999998 222222 2223333 235566666555 777
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCChHHHHHhhc
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLR 259 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~~g~l~~L~~ll~ 259 (715)
-..+.++..++....-.+..--..+.+|.|..+|++....++.+++..+..++...++. ++-+. +.=.|+.+|.
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLk 935 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLK 935 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH
Confidence 77777766666322111111123478999999999999999999999999999654442 11111 1223667778
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHH
Q 005088 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 339 (715)
+.+.++|..|..+++.++..- --..++..|++-|...+-..+....-+++-.+..+.. ..++|.|+
T Consensus 936 ahkK~iRRaa~nTfG~IakaI-------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalm 1001 (1172)
T KOG0213|consen 936 AHKKEIRRAAVNTFGYIAKAI-------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALM 1001 (1172)
T ss_pred HHHHHHHHHHHhhhhHHHHhc-------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHH
Confidence 889999999999999996421 1122445555555543333332222233332211110 12456666
Q ss_pred HHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC
Q 005088 340 EMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 340 ~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 403 (715)
.--+.++..|+.-.+.+++.+-... +.++. -..|.|.+.|.+.+..-|..|+.++..|+.+.
T Consensus 1002 neYrtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 6666688889998888888887665 44443 35677888888999999999999999998664
No 83
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=6.1e-05 Score=80.01 Aligned_cols=309 Identities=15% Similarity=0.165 Sum_probs=197.8
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
-++-.|+.+|++++.-+-.|+ ..|.+-++++..++ -++..|+.|...+....|+..+ .+++
T Consensus 122 ~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~--------~irKKA~Lca~r~irK~P~l~e-----~f~~ 182 (866)
T KOG1062|consen 122 YVVGLALCALGNICSPEMARD------LAPEVERLLQHRDP--------YIRKKAALCAVRFIRKVPDLVE-----HFVI 182 (866)
T ss_pred eehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCH--------HHHHHHHHHHHHHHHcCchHHH-----HhhH
Confidence 677788889998885444432 36788889988776 9999999999999987776554 3456
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC---------------CCHHHHHHHHHHHHH
Q 005088 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGN 275 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~---------------~~~~v~~~a~~~L~~ 275 (715)
...++|.+.+..|...++..+..+|..+++....+.+ .++.|+..|+. ++|-++..+++.|+-
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 7888888888889888999999999877776666655 56667766642 367788889999888
Q ss_pred hhcCChhHHHHHHHcCChHHHHhhhccC------ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHH
Q 005088 276 LVHSSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (715)
Q Consensus 276 L~~~~~~~~~~~~~~g~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v 349 (715)
|-.++++....+- +.|.++.... -..+..++..++..+-. +...+ +. ++..|-++|.+.+..+
T Consensus 261 LGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~Lr--vl---ainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 261 LGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLR--VL---AINILGKFLLNRDNNI 329 (866)
T ss_pred hcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHH--HH---HHHHHHHHhcCCccce
Confidence 8766555443332 2233333211 12344444444444421 11111 11 2345555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhh
Q 005088 350 REMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK 429 (715)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~ 429 (715)
|-.|+.+|......+...+.. -=..++.+|++++..++..|...+..|.... |...
T Consensus 330 rYvaLn~L~r~V~~d~~avqr--Hr~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~--------------------- 385 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAVQR--HRSTILECLKDPDVSIKRRALELSYALVNES-NVRV--------------------- 385 (866)
T ss_pred eeeehhhHHhhhcCCcHHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHH---------------------
Confidence 555555555554443000000 0135778899999999999999988886443 2222
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc-cchhhhcCCcHHHHHHHhcCCCcchhhhhH
Q 005088 430 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGA 508 (715)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa 508 (715)
++..|+.+|...+++.+...+.-+..++.... ...+. +..+..++.....-|+..+.
T Consensus 386 -----------------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~-----idtml~Vl~~aG~~V~~dv~ 443 (866)
T KOG1062|consen 386 -----------------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH-----IDTMLKVLKTAGDFVNDDVV 443 (866)
T ss_pred -----------------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH-----HHHHHHHHHhcccccchhhH
Confidence 45678888999999999999998888865432 22221 44555566655555665565
Q ss_pred HHHHHhhhh
Q 005088 509 VALFKLANK 517 (715)
Q Consensus 509 ~~L~~L~~~ 517 (715)
..+..|..+
T Consensus 444 ~nll~LIa~ 452 (866)
T KOG1062|consen 444 NNLLRLIAN 452 (866)
T ss_pred HHHHHHHhc
Confidence 555555554
No 84
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=7.1e-06 Score=88.92 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=181.9
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
--|..|+..|+... -++-....-...|+.|.++++|.++.. +++-..+.+...+..-++.++..+++.++-
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~ 556 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGY 556 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCc
Confidence 34566888888888 666666667788999999999999876 888888888788877788899889999988
Q ss_pred HHHHHhhcc-C--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHH
Q 005088 210 PPLVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 210 ~~L~~ll~~-~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
..+++.+.. + +++-+..|+.+|..++.+.+..+....+.+.+...+..+.++ .+-++.+++-+|+.|-.+.++.+=
T Consensus 557 ~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw 636 (1387)
T KOG1517|consen 557 KYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARW 636 (1387)
T ss_pred eeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhh
Confidence 888888876 2 358889999999999988788888888899999999999885 688999999999999888777665
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCC----cchhHHH------------hhcCCh---HHHHHHhCCCC
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHI------------VQRGAV---RPLIEMLQSPD 346 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~------------~~~~~l---~~L~~~L~~~~ 346 (715)
.-...++...|+.+|.+..++||..|.++|+.+..+. ++....+ ++.-+. ..++.++++..
T Consensus 637 ~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs 716 (1387)
T KOG1517|consen 637 SGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS 716 (1387)
T ss_pred ccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc
Confidence 5567788999999999999999999999999998642 2211111 111122 36667778889
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 005088 347 VQLREMSAFALGRLAQVI 364 (715)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~ 364 (715)
+-++.+.+.+|..++...
T Consensus 717 plvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 717 PLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999988998888766
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00014 Score=77.04 Aligned_cols=353 Identities=17% Similarity=0.138 Sum_probs=224.1
Q ss_pred HHHhhhcCCCCcccccCCCccchHHHhhHHH-HHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHH
Q 005088 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAF-ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (715)
Q Consensus 108 ~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~-~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 186 (715)
-|.++|.+... ..+..|.+ +++-++.+.+.. ...|.+++...+.+. ++++..-
T Consensus 39 dL~~lLdSnkd------------~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~--------EVKkLVy 92 (968)
T KOG1060|consen 39 DLKQLLDSNKD------------SLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNI--------EVKKLVY 92 (968)
T ss_pred HHHHHHhcccc------------HHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCH--------HHHHHHH
Confidence 56778877665 44445554 455555554432 346788888877765 8888777
Q ss_pred HHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHH
Q 005088 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (715)
Q Consensus 187 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~ 266 (715)
--|...+...+... .=-|..+-+-|+++++.+|..|+++|..+=. +.... -.+-.+-+...+..+-||
T Consensus 93 vYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaP-----I~llAIk~~~~D~s~yVR 160 (968)
T KOG1060|consen 93 VYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAP-----IMLLAIKKAVTDPSPYVR 160 (968)
T ss_pred HHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHH-----HHHHHHHHHhcCCcHHHH
Confidence 77777775444321 1235678888999999999988888776643 11111 122334456677899999
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCC
Q 005088 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (715)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~ 346 (715)
..|+.+|-.|-.-.++...+ ++..+-.+|.+.++-|.-.|+.+...+|- +....+ ++-...|.++|.+-+
T Consensus 161 k~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvd 230 (968)
T KOG1060|consen 161 KTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVD 230 (968)
T ss_pred HHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchh
Confidence 99999999996655555443 46677788899999999999999988873 333333 345678888887755
Q ss_pred HHHHHHHHHHHHHhHHHH--HH-----HHHhcC--------------------ChHHHHH----hhccCChhHHHHHHHH
Q 005088 347 VQLREMSAFALGRLAQVI--TA-----GIAHNG--------------------GLVPLLK----LLDSKNGSLQHNAAFA 395 (715)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~--~~-----~l~~~~--------------------~l~~L~~----ll~~~~~~v~~~a~~~ 395 (715)
..-+...+..|...+... .. ...+.| -+..|++ ++.+.++.|..+++.+
T Consensus 231 eWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 231 EWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQL 310 (968)
T ss_pred hhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhH
Confidence 555666666776666655 11 011111 1233333 4578899999999999
Q ss_pred HHhccCCCchhhHHHhhccccccccchhhhhhhhh----------------------------------HHH--HHHHHH
Q 005088 396 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD----------------------------------CVA--KTLKRL 439 (715)
Q Consensus 396 L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~----------------------------------~~~--~~~~~~ 439 (715)
.+.++...+.. .++ +.|+..+...+..++ ++. ..+.++
T Consensus 311 ~y~lAP~~~~~-~i~-----kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~L 384 (968)
T KOG1060|consen 311 FYHLAPKNQVT-KIA-----KALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNL 384 (968)
T ss_pred HHhhCCHHHHH-HHH-----HHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHH
Confidence 99998543211 111 122221111111111 111 011111
Q ss_pred -HHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 440 -EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 440 -~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
...-.+.+++.+-.++++++.++...|..+|+.++..... +...++.-|+.++++.+..|...++..+..|....
T Consensus 385 a~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 385 ANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred hhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 1111446778888888888888888888899888654321 23356778999999999999999999998888864
No 86
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.40 E-value=0.00014 Score=74.20 Aligned_cols=219 Identities=18% Similarity=0.201 Sum_probs=149.2
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
+|+..+.+++..+..+++.-..+.+.+.--.++.-|...... ..-+++|+..++.+........ ....|.+.
T Consensus 40 ~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~------~~ER~QALkliR~~l~~~~~~~--~~~~~vvr 111 (371)
T PF14664_consen 40 EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN------DVEREQALKLIRAFLEIKKGPK--EIPRGVVR 111 (371)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC------hHHHHHHHHHHHHHHHhcCCcc--cCCHHHHH
Confidence 999999999999998888888888888777777777766542 1567899999999885432222 23457888
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc
Q 005088 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (715)
.++.+..+.++.++..|+.+|+.++..+|+ .+..+|++..|++.+.++..++...++.++..+. ++|..++.+...
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~ 187 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPG 187 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCC
Confidence 999999999999999999999999976554 5678999999999998876668888888888884 446655555443
Q ss_pred CChHHHHhhhccC-------Ch--HHHHHHHHHHHHHhcCCcchhHHHhh-cCChHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005088 291 GALQPVIGLLSSC-------CS--ESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (715)
Q Consensus 291 g~l~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~~~~~v~~~a~~~L~~l 360 (715)
--+..++.-+.+. +. +....+..++..+-..-+.....-.. ..++..|+..|..+.+++|+.....+..+
T Consensus 188 ~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 188 FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3344454444332 12 23334444555544332222111111 14566677777666666666666555544
Q ss_pred H
Q 005088 361 A 361 (715)
Q Consensus 361 ~ 361 (715)
-
T Consensus 268 l 268 (371)
T PF14664_consen 268 L 268 (371)
T ss_pred H
Confidence 3
No 87
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=4.6e-05 Score=77.62 Aligned_cols=322 Identities=15% Similarity=0.093 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
....+++++.-+.+. |..++..|+..+.|++.-........-..+...+..+-.+++. .|+
T Consensus 82 ~~~iv~Pv~~cf~D~------d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~------------~V~- 142 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQ------DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ------------NVR- 142 (675)
T ss_pred HHHhhHHHHHhccCc------cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc------------ccc-
Confidence 334444444444433 6668899999999988732222222233445566666666655 444
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
.++..+-.+. +-..-+.. .=-++.++.+|+..-.... ...+...+.+|..+-. .|...-.-.-...++-|.
T Consensus 143 ~~aeLLdRLikdIVte~~~---tFsL~~~ipLL~eriy~~n----~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf 214 (675)
T KOG0212|consen 143 GGAELLDRLIKDIVTESAS---TFSLPEFIPLLRERIYVIN----PMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLF 214 (675)
T ss_pred cHHHHHHHHHHHhcccccc---ccCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHH
Confidence 3445554444 11111110 1125555555554321111 1777888888888753 333322222345667788
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHH-HHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 292 (715)
.+|.+++++++..+-.++.++... -.+... +.-...++.++.-+.++++.++..|+.-|.....-.+.. -...-+|+
T Consensus 215 ~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~i 292 (675)
T KOG0212|consen 215 NMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGI 292 (675)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhh
Confidence 899999999997777766666531 111111 122456888999999999999999888777775443321 22334677
Q ss_pred hHHHHhhhccCChH-HHHHHHH---HHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HH
Q 005088 293 LQPVIGLLSSCCSE-SQREAAL---LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TA 366 (715)
Q Consensus 293 l~~L~~ll~~~~~~-~~~~a~~---~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~ 366 (715)
+..++.++.+..+. ++..+.. .+..+++ .+.....+--..++..+...+.++..+.|.+++.-+..+-... +-
T Consensus 293 l~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql 371 (675)
T KOG0212|consen 293 LTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL 371 (675)
T ss_pred hhhcccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh
Confidence 77777777766543 3332222 2333432 2222222222345677888888888999999988887776655 33
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchh
Q 005088 367 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 406 (715)
Q Consensus 367 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (715)
........+.|+.-|.+.+..|...++..+.++|.++...
T Consensus 372 ~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 372 LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc
Confidence 3445567788999999999999999999999999776543
No 88
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=0.00025 Score=73.85 Aligned_cols=367 Identities=16% Similarity=0.114 Sum_probs=198.6
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (715)
.+..+++-+..+.+ .++.....+|..+....+... ...+.+.+.+++....- .-+..
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~--------~~~~~ 153 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKI--------AERAG 153 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccH--------HHHhh
Confidence 35667777776666 888888888877762111110 11235667777774433 66677
Q ss_pred HHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHH-HHHHHHHHhcCChhhHHHHHhCCCh---HHHHHhhcC
Q 005088 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFKNDENKNQIVECNAL---PTLILMLRS 260 (715)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~-a~~~L~~L~~~~~~~~~~~~~~g~l---~~L~~ll~~ 260 (715)
+.+.++.+..+. .-..+.+.+.+..+...+.+.....++. ++.+....+.. -. ...+..++ +.++.-+.+
T Consensus 154 aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~-Lg---~~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 154 AAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGN-LG---PPFEPYIVPILPSILTNFGD 227 (569)
T ss_pred hhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh-cC---CCCCchHHhhHHHHHHHhhc
Confidence 778888776433 2334556677888888887765544443 33222222211 00 11223344 444444556
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHH
Q 005088 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (715)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 340 (715)
..+.+|..+..+...+...-+.... .-+++.++.-+....+.....++..++.++...+.. .......++|.+.+
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lse 302 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSE 302 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHH
Confidence 6788888888777776433222111 123555555555557888889999999887654444 34455789999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc--C--CCchhhHHHhhccc
Q 005088 341 MLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA--D--NEDNVADFIRVGGV 415 (715)
Q Consensus 341 ~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~--~--~~~~~~~l~~~~~i 415 (715)
.|.+..+++|+++..+|.+++... -..+ ...++.|++.+.+++..+. .+...|+.-. . .+.....++
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI--~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmv----- 374 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDI--QKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMV----- 374 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHH--HHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHH-----
Confidence 999999999999999999998655 1111 1244556666655543222 2222222211 0 011111111
Q ss_pred cccccch----hhhhhhhhHHHHHHHHHH--HHHhhhhHH----HHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhc
Q 005088 416 QKLQDGE----FIVQATKDCVAKTLKRLE--EKIHGRVLN----HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 485 (715)
Q Consensus 416 ~~L~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~l~----~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 485 (715)
+.|.+.. ...+-...-+.+++..+. ..+-...++ .|-..+.+..|++|..++++|+.+-........
T Consensus 375 piL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f--- 451 (569)
T KOG1242|consen 375 PILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF--- 451 (569)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---
Confidence 1111110 011111111222222221 222222333 344444455799999999999887554332222
Q ss_pred CCcHHHHHHHhcC-CCcchhhhhHHHHHHhhh
Q 005088 486 GGGLELLLGLLGS-TNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 486 ~~~i~~L~~ll~~-~~~~~~~~aa~~L~~L~~ 516 (715)
.+.+|.+.+.+.+ .....+.-++..|.....
T Consensus 452 ~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 452 DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 4556666666654 233344455555554444
No 89
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00054 Score=72.11 Aligned_cols=222 Identities=16% Similarity=0.199 Sum_probs=143.7
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
.+.++.+|.+. -+.++..|+-.+..+.- -|+..+. ++|.|++-|.++++ .|+..|.
T Consensus 146 a~Dv~tLL~ss------kpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp------------~V~SAAV 202 (877)
T KOG1059|consen 146 ADDVFTLLNSS------KPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDP------------SVVSAAV 202 (877)
T ss_pred HHHHHHHHhcC------chHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCc------------hHHHHHH
Confidence 34444555444 45567777777766654 3433222 57888888888887 8888899
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 216 (715)
.++..|+ .+|.+.- ..-|.+..+|....++ =+....+..+++|+.-.|... ...+++|..++
T Consensus 203 ~VICELArKnPknyL-----~LAP~ffkllttSsNN-------WmLIKiiKLF~aLtplEPRLg-----KKLieplt~li 265 (877)
T KOG1059|consen 203 SVICELARKNPQNYL-----QLAPLFYKLLVTSSNN-------WVLIKLLKLFAALTPLEPRLG-----KKLIEPITELM 265 (877)
T ss_pred HHHHHHHhhCCcccc-----cccHHHHHHHhccCCC-------eehHHHHHHHhhccccCchhh-----hhhhhHHHHHH
Confidence 9999988 7777642 2347777888766553 445556777777775444433 24667888888
Q ss_pred ccCC-HHHHHHHHHHHH--HHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005088 217 EFTD-TKVQRAAAGALR--TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (715)
Q Consensus 217 ~~~~-~~v~~~a~~~L~--~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l 293 (715)
.+.. ..+...+..++. +++.+-+.....+. =+++.|-.++.+.|+.+++-.+-+++.+...++...+. .-
T Consensus 266 ~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~k 338 (877)
T KOG1059|consen 266 ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HK 338 (877)
T ss_pred HhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hH
Confidence 7654 233333333332 23322222221111 14666777888899999999999999998766654333 34
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHH
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (715)
+.++.+|.+.++.+|..|+..+.-+.+ .++...+
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~eI 372 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVS--KKNLMEI 372 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHHH
Confidence 678899999999999999999988863 3444433
No 90
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.36 E-value=0.0002 Score=73.08 Aligned_cols=314 Identities=14% Similarity=0.106 Sum_probs=200.9
Q ss_pred CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC--CHH
Q 005088 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTK 222 (715)
Q Consensus 145 ~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~ 222 (715)
..|+.+..+.-....+.+..++-+++. +++..+.++++++.. ++..-..+...+.--.++..+..+ +..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 555555555544455555544444334 999999999999987 445555566666666666666543 344
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc
Q 005088 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (715)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~ 302 (715)
=+++|++.++.+..-.. ... ....|++..++.+..+.++..+..|+.+|..++-.+|+ .+...|++..+.+.+.+
T Consensus 84 ER~QALkliR~~l~~~~-~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKK-GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHhcC-Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence 57899999988885311 111 12447889999999999999999999999999988774 56789999999999998
Q ss_pred CChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCC-------CH--HHHHHHHHHHHHhHHHH--HHHHH--
Q 005088 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DV--QLREMSAFALGRLAQVI--TAGIA-- 369 (715)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-------~~--~v~~~a~~~L~~l~~~~--~~~l~-- 369 (715)
+..++....+.++..+. ..|..+..+...--+..++.-+.+. +. +.-..+..++..+-... --.+.
T Consensus 159 ~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 77677777888888886 4666666655544455555554332 22 23345555665555444 11111
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhccCC--CchhhHHH------hhccccccccch--h-----hhhh---hhhH
Q 005088 370 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFI------RVGGVQKLQDGE--F-----IVQA---TKDC 431 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~------~~~~i~~L~~~~--~-----~~~~---~~~~ 431 (715)
+..++..|+..|..+++++|......+..+.+- ++....+. ..|-...-.+.. + .... ...-
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 317 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN 317 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence 226889999999999999999999999998643 22111111 111110000000 0 0000 0001
Q ss_pred HHHHH--HHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHHHHHHhh
Q 005088 432 VAKTL--KRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHL 473 (715)
Q Consensus 432 ~~~~~--~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l 473 (715)
+.... --+...+..|.++.|+++..+. ++.+...|...|+.+
T Consensus 318 l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 318 LVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 11111 1223345889999999999998 888999998888766
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.34 E-value=8.7e-05 Score=76.59 Aligned_cols=243 Identities=18% Similarity=0.050 Sum_probs=169.7
Q ss_pred CChHHHHhhhc-CCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 104 GAVPALVKHLQ-APPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 104 g~v~~L~~lL~-~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
.+++.++..|. +.+. +++..++.++... +++. ++..|+..|.+.++ .++
T Consensus 54 ~a~~~L~~aL~~d~~~------------ev~~~aa~al~~~-~~~~---------~~~~L~~~L~d~~~--------~vr 103 (410)
T TIGR02270 54 AATELLVSALAEADEP------------GRVACAALALLAQ-EDAL---------DLRSVLAVLQAGPE--------GLC 103 (410)
T ss_pred hHHHHHHHHHhhCCCh------------hHHHHHHHHHhcc-CChH---------HHHHHHHHhcCCCH--------HHH
Confidence 35788888885 4444 7776666555322 2221 27888999988765 788
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 262 (715)
..++..|+.+- ..+..+.|+.++++.++.++..++.++.... ....+.+..++++++
T Consensus 104 ~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d 160 (410)
T TIGR02270 104 AGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHED 160 (410)
T ss_pred HHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCC
Confidence 88888887652 2345678999999999999988887766633 234568889999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 342 (715)
+.|+..++.+|+.+-.. ..++.|...+.+.++.++..|+.++..+- .+. .+..+....
T Consensus 161 ~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG--~~~---------A~~~l~~~~ 218 (410)
T TIGR02270 161 ALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAG--SRL---------AWGVCRRFQ 218 (410)
T ss_pred HHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC--CHh---------HHHHHHHHH
Confidence 99999999999998422 24566778899999999999999998763 222 245556544
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccch
Q 005088 343 QSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 422 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~ 422 (715)
..........+..++... -....++.|..++++.. ++..++.+++.+-...
T Consensus 219 ~~~g~~~~~~l~~~lal~--------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~------------------- 269 (410)
T TIGR02270 219 VLEGGPHRQRLLVLLAVA--------GGPDAQAWLRELLQAAA--TRREALRAVGLVGDVE------------------- 269 (410)
T ss_pred hccCccHHHHHHHHHHhC--------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc-------------------
Confidence 444444444444444332 12256777888887654 8999999999874322
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q 005088 423 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 476 (715)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 476 (715)
.++.|+..+.+.. ++..|..++..++.-
T Consensus 270 ------------------------av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 270 ------------------------AAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred ------------------------hHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 4566777666554 899999999998654
No 92
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.7e-06 Score=86.93 Aligned_cols=297 Identities=13% Similarity=0.096 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcC
Q 005088 80 AKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~ 157 (715)
...++.+|..++++ .-.|.-+.+..+++.|+++|.+++. .+.--+...+.|+. .-...+..+...|
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei------------mi~~~~t~~icn~vv~fsnL~~~fL~~~ 473 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI------------MIEFPDTIDICNKVVPFSNLGAGFLEKS 473 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc------------eeeccchhhhhheeeeccchHHHHHHhh
Confidence 34455566666665 4566778888999999999998766 56666777788877 6677888899999
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccc-hhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (715)
++..++.++.+.++ .++....|+++++..+..+. +-.+...-++..++.+..++...++..++.+|+|++-
T Consensus 474 iIdvl~~~v~sKDd--------aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 474 IIDVLVNLVMSKDD--------ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHHHHHHHhhcchh--------hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 99999999987655 89999999999999766554 4456677889999999999999999999999999985
Q ss_pred CChh---hHHHHHhCC----ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHhhhcc------
Q 005088 237 KNDE---NKNQIVECN----ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS------ 302 (715)
Q Consensus 237 ~~~~---~~~~~~~~g----~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~------ 302 (715)
+... .++...+.. ..+.|+.-++..+|-.....+..|.+++..+++....+.. ...+..+...|..
T Consensus 546 ~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~ 625 (743)
T COG5369 546 DTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTP 625 (743)
T ss_pred ccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCC
Confidence 3332 222222211 2344555566666655566688888888877766555543 4455555544421
Q ss_pred ---C--ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh---CCCCHHHHHHHHHHHHHhHHHH----------
Q 005088 303 ---C--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQVI---------- 364 (715)
Q Consensus 303 ---~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L---~~~~~~v~~~a~~~L~~l~~~~---------- 364 (715)
+ ...+...-.....++....+......... |.+=..= ..++.+.-.+..|.+.|+....
T Consensus 626 L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratv 702 (743)
T COG5369 626 LSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATV 702 (743)
T ss_pred CCCCCCcccccCccceeeecccccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhH
Confidence 1 01111111122222222111111111100 1111111 1134556777777777765433
Q ss_pred --HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 365 --TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 365 --~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
...+.+.|.-+.+..+..+.++.|++.+-.+|.++
T Consensus 703 eR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 703 ERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 23344555556666666788889999999999886
No 93
>PF05536 Neurochondrin: Neurochondrin
Probab=98.33 E-value=0.00065 Score=73.33 Aligned_cols=202 Identities=14% Similarity=0.154 Sum_probs=138.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-h---hhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHH
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E---EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (715)
..+.+.+.+|+.. +.+.+..++..+..+..+ + ..++.+.+.=+.+.|-++|..+..+.. ......
T Consensus 5 ~~l~~c~~lL~~~------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~-----~~~~~~ 73 (543)
T PF05536_consen 5 ASLEKCLSLLKSA------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSD-----CPPEEY 73 (543)
T ss_pred HHHHHHHHHhccC------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCC-----CCHHHH
Confidence 3466677777766 234578888899998884 2 233456677678999999988654210 123377
Q ss_pred HhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
+.-|+.+|..+|..|+....---.+-||.|++++...... ++...|..+|..++ .+++.+..+.+.|+++.|
T Consensus 74 ~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~-------~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 74 LSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDL-------ETVDDALQCLLAIA-SSPEGAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCch-------hHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHH
Confidence 8889999999997777653333335699999999887652 88899999999999 588888899999999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh-----CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005088 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (715)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-----~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 280 (715)
++.+.+ .+.....++.++.+++..... ....+ ..+++.+...+.......+...+..|..+-...
T Consensus 146 ~ei~~~-~~~~~E~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 146 CEIIPN-QSFQMEIALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHh-CcchHHHHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 999977 556678888888888753221 11101 123444555555555555666677777664433
No 94
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=4.6e-05 Score=80.99 Aligned_cols=382 Identities=18% Similarity=0.171 Sum_probs=230.0
Q ss_pred HHHHHH-HHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcC
Q 005088 80 AKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~-~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~ 157 (715)
+..|+. +++.+..+.+. ++..|-++......+. +++..+---+.+.+ ..|+..
T Consensus 30 r~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl------------elKKlvyLYl~nYa~~~P~~a------- 84 (734)
T KOG1061|consen 30 RKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL------------ELKKLVYLYLMNYAKGKPDLA------- 84 (734)
T ss_pred HHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc------------hHHHHHHHHHHHhhccCchHH-------
Confidence 444444 44444444332 2346667777766666 88888888888888 676653
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (715)
+-.+-.++++..+. .+.++..|++.++.+- .+.... -....+...+++.++.++..+..+..++-.
T Consensus 85 -~~avnt~~kD~~d~-----np~iR~lAlrtm~~l~--v~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~- 150 (734)
T KOG1061|consen 85 -ILAVNTFLKDCEDP-----NPLIRALALRTMGCLR--VDKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD- 150 (734)
T ss_pred -HhhhhhhhccCCCC-----CHHHHHHHhhceeeEe--ehHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhc-
Confidence 22233344444332 1266666666665553 222222 234688899999999999999998888874
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHH
Q 005088 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (715)
Q Consensus 238 ~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (715)
...+...+.|+++.|-.++.++++.|...|+.+|..+...+++.....+....+..++..+.....--+.. ++.+
T Consensus 151 --~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~ 225 (734)
T KOG1061|consen 151 --IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILDC 225 (734)
T ss_pred --CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHHH
Confidence 34456677899999999999999999999999999997655431111111223334444444333323333 3333
Q ss_pred HhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHH
Q 005088 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 395 (715)
Q Consensus 318 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 395 (715)
++...+..-... ..++..+...|.+.++.+...+...+.++.... .....-...-+.++.++.+.. +++..++.=
T Consensus 226 l~~y~p~d~~ea--~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrN 302 (734)
T KOG1061|consen 226 LAEYVPKDSREA--EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRN 302 (734)
T ss_pred HHhcCCCCchhH--HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhh
Confidence 433222221111 235677777888888888888888888887665 223333455566666666655 676666555
Q ss_pred HHhccCCCchhhHHHhhccccccc---cchhhhhhhhhHHHHHH--HHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 005088 396 LYGLADNEDNVADFIRVGGVQKLQ---DGEFIVQATKDCVAKTL--KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 470 (715)
Q Consensus 396 L~~l~~~~~~~~~l~~~~~i~~L~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL 470 (715)
+.-+....+. +.....-.-+. +..+......+|..... .++.+ ++..|...-..-+.+..+.+.+++
T Consensus 303 i~lil~~~p~---~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q-----vl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 303 INLILQKRPE---ILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ-----VLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred HHHHHHhChH---HHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHh
Confidence 5444322111 11111101111 11122222223332222 22222 566677777777999999999999
Q ss_pred HhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcccc
Q 005088 471 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 521 (715)
Q Consensus 471 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~~ 521 (715)
++++..-+.. .+.+..|.++++.+..-+...+...+..+.++-+..
T Consensus 375 g~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 375 GRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred hhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 9997664433 578999999999888888888888888888865433
No 95
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0002 Score=75.15 Aligned_cols=223 Identities=20% Similarity=0.247 Sum_probs=163.4
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (715)
-+-++.+|.+..+ -++..|+.++..++...++.- ...+|.|+.-|.++|+.|+.+|..+++.|+..+
T Consensus 146 a~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 146 ADDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 3567778887766 899999999999987666532 257899999999999999999999999999988
Q ss_pred hhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC-hHHHHHHHHHHH
Q 005088 239 DENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLG 316 (715)
Q Consensus 239 ~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~ 316 (715)
|.+.- .+-|.+.+++... +.=+....+..+++|+--.|... ..+++.|..++.+.. ..+..++..++-
T Consensus 213 PknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 213 PQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVV 282 (877)
T ss_pred Ccccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence 87643 3568888888664 55677788889999976666543 346888999988754 455555555432
Q ss_pred --HHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHH
Q 005088 317 --QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 394 (715)
Q Consensus 317 --~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 394 (715)
++.++.+++-..+. -+++.|-.++.++|+.++.-++.+++.++......+.. --+.++++|.+.++.+|..|+.
T Consensus 283 a~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa--~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA--HKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred eehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH--hHHHHHHHhccCCchhHHHHHH
Confidence 44444433332222 13678888889999999999999999888666222221 2356789999999999999999
Q ss_pred HHHhccCCCchhhHH
Q 005088 395 ALYGLADNEDNVADF 409 (715)
Q Consensus 395 ~L~~l~~~~~~~~~l 409 (715)
.|..+... +|...+
T Consensus 359 Ll~gmVsk-kNl~eI 372 (877)
T KOG1059|consen 359 LLYGMVSK-KNLMEI 372 (877)
T ss_pred HHHHHhhh-hhHHHH
Confidence 99988643 344433
No 96
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00027 Score=66.92 Aligned_cols=270 Identities=18% Similarity=0.158 Sum_probs=165.9
Q ss_pred HHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH-hcCChHHHHHHHccccCCCcchhhhHHHHHH
Q 005088 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (715)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (715)
.-++.++.+.++ .|+..|...+..++.. ..+.... +...++.+.++++.... .+.|
T Consensus 6 ~elv~ll~~~sP------------~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~----------~~~a 62 (353)
T KOG2973|consen 6 VELVELLHSLSP------------PVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP----------AEPA 62 (353)
T ss_pred HHHHHHhccCCh------------HHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc----------ccHH
Confidence 457888888888 9999999999999844 2221111 23457778888887653 3678
Q ss_pred HHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHHHhhc
Q 005088 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE------CNALPTLILMLR 259 (715)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~l~~L~~ll~ 259 (715)
+.+|.|++. ++..+..+... .+..++..+.++...+....|..|.|++..+......... .|.+........
T Consensus 63 ~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d 140 (353)
T KOG2973|consen 63 ATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD 140 (353)
T ss_pred HHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC
Confidence 999999997 66666666655 7778888887776777888999999999855444333321 344444444444
Q ss_pred CC-CH-HHHHHHHHHHHHhhcCChhHHHHHHHcCCh-HHHHhhhccCChHHHHH-HHHHHHHHhcCCcchhHHHhh--cC
Q 005088 260 SE-DS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSSCCSESQRE-AALLLGQFAATDSDCKVHIVQ--RG 333 (715)
Q Consensus 260 ~~-~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l-~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~--~~ 333 (715)
.+ +. .--...+.++.||+.. +..+..+.....+ ...+..+...+..+|+. .+.+|.|+|...... ..+.+ .+
T Consensus 141 ~~~n~~a~f~ylA~vf~nls~~-~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~ 218 (353)
T KOG2973|consen 141 KSYNAYAEFHYLAPVFANLSQF-EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESIN 218 (353)
T ss_pred cccccccchhHHHHHHHHHhhh-hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhH-HHHhcchHH
Confidence 43 21 2234456677787543 3334444443322 12222223345566654 577888887643322 22222 22
Q ss_pred ChHHHH---------------------HHh-----CCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhc--c
Q 005088 334 AVRPLI---------------------EML-----QSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLD--S 383 (715)
Q Consensus 334 ~l~~L~---------------------~~L-----~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~--~ 383 (715)
++|.++ ++| +.+++.+|..-+.+|..|+... |+.+.+.|+.+ +++-++ .
T Consensus 219 lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp-ilRElhk~e 297 (353)
T KOG2973|consen 219 LLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP-ILRELHKWE 297 (353)
T ss_pred HHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH-HHHHHhcCC
Confidence 333332 233 1467899999999999998877 66666655555 555553 4
Q ss_pred CChhHHHHHHHHHHhccCCCc
Q 005088 384 KNGSLQHNAAFALYGLADNED 404 (715)
Q Consensus 384 ~~~~v~~~a~~~L~~l~~~~~ 404 (715)
.++.++..+-...-.+.+..+
T Consensus 298 ~ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 298 EDEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred CcHHHHHHHHHHHHHHHhccc
Confidence 567777666666555555443
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.28 E-value=5.5e-05 Score=77.68 Aligned_cols=258 Identities=16% Similarity=0.144 Sum_probs=164.3
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhH--HHHHhcCChHHHHHHHccccCCCcchhhhHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~ 181 (715)
++...+.+|++..+ .+|.+|+...+.|+ .-..|. +.+...| ..|.+-|....+ ++
T Consensus 605 ivStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~yp--------Ev 662 (975)
T COG5181 605 IVSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYP--------EV 662 (975)
T ss_pred HHHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccH--------HH
Confidence 45667788888888 99999999999988 222221 1222223 234455554443 67
Q ss_pred HHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCChHHHHHhh
Q 005088 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILML 258 (715)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~~g~l~~L~~ll 258 (715)
.-..+.++..+.....-..-+--..|.+|.|..+|++....+..+.+..+..++...++. ++-+. +.=.|+..|
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L 739 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL 739 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH
Confidence 666666666665322211111123588999999999999999999999999999755542 11111 122366778
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 338 (715)
.+.+.++|..|..+++.++..- .-..++..|+.-|...+-..+.-..-+++-.+..+.. ..++|.|
T Consensus 740 ks~nKeiRR~A~~tfG~Is~ai-------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~l 805 (975)
T COG5181 740 KSWNKEIRRNATETFGCISRAI-------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTL 805 (975)
T ss_pred HHhhHHHHHhhhhhhhhHHhhc-------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHH
Confidence 8889999999999999995421 1122455556555544333333333333333221100 1245666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC
Q 005088 339 IEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 339 ~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 403 (715)
+.--..++..|+.-.+.+++.+-+.. +.++. ...|.|-+.|.+.++.-|..|...+..|+.+.
T Consensus 806 m~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 806 MSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 55556678889988888888887666 33333 35667778888999999999999999997663
No 98
>PF05536 Neurochondrin: Neurochondrin
Probab=98.28 E-value=0.0014 Score=70.76 Aligned_cols=243 Identities=16% Similarity=0.156 Sum_probs=164.0
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CCh---hhHHHHHhcCChHHHHHHHccccCCCcchhhhHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP---EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~---~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~ 181 (715)
+...+.+|+..+. +=+..++-.+.+++ .++ ..++.+.+.=+.+.+-++|.....+... +....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence 5667788887775 77888898999999 433 2334567776788899999885533221 33488
Q ss_pred HHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCH-HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC
Q 005088 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (715)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~ 260 (715)
+.-++.+|..+|. .++....-.-.+-+|.|++++...+. .+...|+.+|..++ ..+..+..+.+.|+++.|+..+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh
Confidence 8999999999997 55443222223678999999977666 99999999999999 589999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHH-H--HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcch-hHHHhhcC---
Q 005088 261 EDSAIHYEAVGVIGNLVHSSPNIK-K--EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRG--- 333 (715)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~-~--~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~--- 333 (715)
.+.....++.++.++........ . .-.-..+++.+...+.......+-+.+..|.++-...+.. ........
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 55567778888888865433110 0 0000134455555555555666777788888876544211 11122222
Q ss_pred -ChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH
Q 005088 334 -AVRPLIEMLQS-PDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 334 -~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~ 364 (715)
+...+..+|++ ..+.-|..+......|....
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 33445555655 55667777777777776655
No 99
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0015 Score=71.43 Aligned_cols=447 Identities=15% Similarity=0.098 Sum_probs=260.4
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHh-cCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
.....+.+..+...-..++....+....+.++.-++.-+.+|..+.+ ..+|.-++.++.-... +.+..
T Consensus 1433 ~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~v-----------Pr~~~ 1501 (2235)
T KOG1789|consen 1433 VTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNL-----------PRLST 1501 (2235)
T ss_pred HHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc-----------cHHHH
Confidence 33444455555544333323334556667777777777777777776 4567777777766554 27888
Q ss_pred hHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCC------------cchhhhHHHHHHHHHHHHHhc------cC
Q 005088 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN------------CSRAVNSVIRRAADAITNLAH------EN 196 (715)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~------------~~~~~~~~~~~a~~~L~~L~~------~~ 196 (715)
.++.++...+.++..+..+++.|++-.++.+|-..+..- ......+....++.+|+.|.. ..
T Consensus 1502 aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~T 1581 (2235)
T KOG1789|consen 1502 AAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENT 1581 (2235)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 999999999999999999999999999999885533210 011123555566677776652 11
Q ss_pred ccchhH--HHhcCCcHHHHHhhc------------cC-------------------------------------------
Q 005088 197 SSIKTR--VRMEGGIPPLVELLE------------FT------------------------------------------- 219 (715)
Q Consensus 197 ~~~~~~--~~~~g~i~~L~~ll~------------~~------------------------------------------- 219 (715)
+.+... ....-.-|.+..+|+ ++
T Consensus 1582 P~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Y 1661 (2235)
T KOG1789|consen 1582 PDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEY 1661 (2235)
T ss_pred CCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeee
Confidence 111110 000011122222222 11
Q ss_pred ----------------------------------------------------------------------------CHHH
Q 005088 220 ----------------------------------------------------------------------------DTKV 223 (715)
Q Consensus 220 ----------------------------------------------------------------------------~~~v 223 (715)
..+-
T Consensus 1662 s~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~ 1741 (2235)
T KOG1789|consen 1662 SVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETK 1741 (2235)
T ss_pred hhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHH
Confidence 1123
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh
Q 005088 224 QRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (715)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~----~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ 298 (715)
...++.+|.|+...+|+....+.. -|..+.+..++.. .++.++.-|+..+..+.. +.++...+...|.+..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHH
Confidence 456888899988877755444322 3667778777766 478899999998888754 4666788889999999998
Q ss_pred hhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHhHHHH----HHHHHhcCC
Q 005088 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVI----TAGIAHNGG 373 (715)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~ 373 (715)
+|.+. +..+..++.+|..+++ +++......++|++..+.+++- +..+..|..++..++.+.... +..+.--..
T Consensus 1821 lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 88764 7788899999999975 5566667777888888888874 478899999999999998766 222211122
Q ss_pred hH-HHHHhhccCC-------------------hhHHHHHHHHHHhccCC--Cchh-hHHHhhccccccccchhhhhhhhh
Q 005088 374 LV-PLLKLLDSKN-------------------GSLQHNAAFALYGLADN--EDNV-ADFIRVGGVQKLQDGEFIVQATKD 430 (715)
Q Consensus 374 l~-~L~~ll~~~~-------------------~~v~~~a~~~L~~l~~~--~~~~-~~l~~~~~i~~L~~~~~~~~~~~~ 430 (715)
+| .+++.++++. +..+......+..++.. .+.. ...++-+..+... ......+.
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsA---g~~Ea~~E 1975 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSA---GTSEADKE 1975 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhc---chhhhccC
Confidence 22 1333333221 11222222222222210 0000 0000000000000 00011112
Q ss_pred HHHHHHHH------------HHHHHhhhhHHHHHHHHhhhhhh--HHHHHHHHHHhh-cCCCccchhhhcCCcHHHHHHH
Q 005088 431 CVAKTLKR------------LEEKIHGRVLNHLLYLMRVAEKG--VQRRVALALAHL-CSPDDQRTIFIDGGGLELLLGL 495 (715)
Q Consensus 431 ~~~~~~~~------------~~~~~~~~~l~~L~~ll~~~~~~--v~~~a~~aL~~l-~~~~~~~~~~~~~~~i~~L~~l 495 (715)
|....... -...+-.+.++.++++|..++++ .-..-..++..| ...+.-...+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 21111100 01122345677778888776443 222222233333 4455555555677999999999
Q ss_pred hcCCCcchhhhhHHHHHHhhhhcc
Q 005088 496 LGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 496 l~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+...+...-..|...|-.|+.+..
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lsen~~ 2079 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQF 2079 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhhccH
Confidence 988887777888888888877643
No 100
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.5e-05 Score=78.89 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC
Q 005088 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (715)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 303 (715)
..+++.+|..++..-...|..+.+..+.+.|+.+|.+++.-+...+...++|+...-+..+..+++.|+++.++.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34566667777765555677788889999999999998888888899999999877778888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCcch-hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHH------HHHhc----C
Q 005088 304 CSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITA------GIAHN----G 372 (715)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~------~l~~~----~ 372 (715)
+..++....|.+..+..++.+. +-.+...-++..++++.+++...+++.+...|.|++...++ .+... -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 9999999999999998766544 34456677889999999999999999999999999986511 11111 1
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHH
Q 005088 373 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 410 (715)
Q Consensus 373 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 410 (715)
..+.|++.+.+.+|--....+..|.+++...++...++
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 33456677788888777888999999977766665543
No 101
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.24 E-value=0.00022 Score=77.07 Aligned_cols=430 Identities=15% Similarity=0.119 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHH
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (715)
....++.+|+.+..-++.+ ....+..++..|..+... |+....- -...+|.+...|.+.+. ....+
T Consensus 429 L~~~~~~iVkai~~qlr~k--s~kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSs----------ss~~k 495 (1233)
T KOG1824|consen 429 LSDQVPLIVKAIQKQLREK--SVKTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSS----------SSNLK 495 (1233)
T ss_pred HHhhhHHHHHHHHHHHhhc--cccchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccc----------hHHHH
Confidence 4556777777777666533 222455566666666552 3321110 12356777777766554 22677
Q ss_pred hhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc--
Q 005088 134 KGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI-- 209 (715)
Q Consensus 134 ~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i-- 209 (715)
..++..+.++. ..|+. .+..++.|...+...-.++- ..+-..|+.+...++.--.+... -...++-
T Consensus 496 i~~L~fl~~~L~s~~p~~-----fhp~~~~Ls~~v~~aV~d~f----yKisaEAL~v~~~lvkvirpl~~-~~~~d~~~~ 565 (1233)
T KOG1824|consen 496 IDALVFLYSALISHPPEV-----FHPHLSALSPPVVAAVGDPF----YKISAEALLVCQQLVKVIRPLQP-PSSFDASPY 565 (1233)
T ss_pred HHHHHHHHHHHhcCChhh-----cccchhhhhhHHHHHhcCch----HhhhHHHHHHHHHHHHHhcccCC-CccCCCChh
Confidence 77877777765 33332 23334444443332221111 15556666666666631100000 0011111
Q ss_pred -----HHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005088 210 -----PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 210 -----~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
...++.+. +.|.+|++.|+.+++.+.....+.-.... ...++.+++-+ .++-.|..|++++.-++...-.
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL-~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL-PRTLPILLERL--GNEITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccce
Confidence 22233333 45689999999999988742111100000 12344444444 4666788899999999765433
Q ss_pred HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHH
Q 005088 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~ 362 (715)
....-.-..+++.+...+.......+.....++-.+..........-.-..++..+..++...+-.+-..|...|+.++.
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 22122223356666666665444455555555544443222221111112345556666777888888899999988887
Q ss_pred HH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc----CC-Cchhh--HHHh---hccccccccc--hhhhhhh
Q 005088 363 VI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA----DN-EDNVA--DFIR---VGGVQKLQDG--EFIVQAT 428 (715)
Q Consensus 363 ~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~----~~-~~~~~--~l~~---~~~i~~L~~~--~~~~~~~ 428 (715)
.. .-......+++.++.+++++ -++..|..++.++. .+ .++.. .+.. .-+.....+. -....+.
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~si 800 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSI 800 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHH
Confidence 77 34445566788888888665 44555555555442 11 11111 0110 0000000000 0112233
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhh--hhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhh
Q 005088 429 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 506 (715)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 506 (715)
..|++......... .......|+.-+.++ +..++..|...|+.+........ ..+....+++-+++++++++.+
T Consensus 801 A~cvA~Lt~~~~~~-s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvksA 876 (1233)
T KOG1824|consen 801 AKCVAALTCACPQK-SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKSA 876 (1233)
T ss_pred HHHHHHHHHhcccc-chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHHH
Confidence 44444333222221 222334444444433 56788888888888866543221 1233446788899999999999
Q ss_pred hHHHHHHhhh
Q 005088 507 GAVALFKLAN 516 (715)
Q Consensus 507 aa~~L~~L~~ 516 (715)
|+.||.+++.
T Consensus 877 As~ALGsl~v 886 (1233)
T KOG1824|consen 877 ASYALGSLAV 886 (1233)
T ss_pred HHHHhhhhhc
Confidence 9999999888
No 102
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.22 E-value=1.4e-06 Score=91.68 Aligned_cols=66 Identities=29% Similarity=0.465 Sum_probs=54.7
Q ss_pred CcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCC------------CCceecCCCCHHHHHHHHHHHhcCCc
Q 005088 546 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD------------ARDIEIPNIRWEVFELMMRFIYTGSV 611 (715)
Q Consensus 546 ~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~------------~~~i~l~~~~~~~~~~~l~~~Y~~~~ 611 (715)
.+.||+|.|++..|++||+||++||+||+++|....+.+. ...+.+++++|..|+.+|+|+||+..
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 5679999999999999999999999999999965432211 12466889999999999999999854
No 103
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.21 E-value=3.2e-06 Score=77.25 Aligned_cols=143 Identities=19% Similarity=0.260 Sum_probs=91.4
Q ss_pred cchhhhhHHHHHHhhhhcccccccCCCCCCCCccccchHHHhc-CCCcccEEEEe-cC--------------eeecchHH
Q 005088 501 PKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVN-NATLSDVTFLV-EG--------------RRFYAHRI 564 (715)
Q Consensus 501 ~~~~~~aa~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~-~~--------------~~~~~h~~ 564 (715)
++....-...|-+|+.+...+..+. .+ .+.+|. .-.+.|+.+.+ +| .++++|+.
T Consensus 199 Ed~~fqn~diL~QL~edFG~~kkLd---------~D-mkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahka 268 (401)
T KOG2838|consen 199 EDLGFQNSDILEQLCEDFGCFKKLD---------ED-MKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKA 268 (401)
T ss_pred hhcCCchHHHHHHHHHhhCCchhhh---------HH-HHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHH
Confidence 3444455667777777765555422 11 133333 33455555543 22 57899999
Q ss_pred HHhhccHHHHHhhcCCCCCCC---C------CceecCC-CCHHHH-HHHHHHHhcCCcccC-------------------
Q 005088 565 CLLASSDAFRAMFDGGYREKD---A------RDIEIPN-IRWEVF-ELMMRFIYTGSVDVT------------------- 614 (715)
Q Consensus 565 iL~~~s~~f~~~~~~~~~e~~---~------~~i~l~~-~~~~~~-~~~l~~~Y~~~~~~~------------------- 614 (715)
|.++||+||+.++.....+++ . .+|.+++ +-|.+| ..+++++||+.++++
T Consensus 269 i~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAit 348 (401)
T KOG2838|consen 269 IAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAIT 348 (401)
T ss_pred HHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHH
Confidence 999999999999965443322 2 2455554 334444 567899999987643
Q ss_pred ---------HHHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHH
Q 005088 615 ---------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 653 (715)
Q Consensus 615 ---------~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~ 653 (715)
...+.+++++|.+|.++-|.+.|+..+......+++..+
T Consensus 349 naGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 349 NAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGC 396 (401)
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 123467888888888888888888888776665554443
No 104
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.19 E-value=1.8e-05 Score=64.80 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
....+..+|.-.... .+.+.+.+...-|+|.+-+|-+-..+.+.+++..++.-|...+. .+.+
T Consensus 14 Rl~Ylq~LV~efq~t-----t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne------------~Lve 76 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTT-----TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE------------LLVE 76 (173)
T ss_pred HHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH------------HHHH
Confidence 344555666666655 46667888999999999999999999999999999999999888 8999
Q ss_pred hHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh
Q 005088 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (715)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (715)
.++..|.|+|-++.+.+.+.+.+++|.++..+.++.. ...-.++.++..++......+..+..
T Consensus 77 fgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e--------~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 77 FGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPE--------ITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChH--------HHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999999999999999999988765 78888999999999766665555543
No 105
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.0011 Score=72.41 Aligned_cols=301 Identities=17% Similarity=0.181 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhc-ChhhHHHHHh----cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHH
Q 005088 79 AAKRATHVLAELAK-NEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (715)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~----~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i 153 (715)
...-++.+|.|+.. +|+....+.+ .|..+.+..+|..... +.++..|+.++..+..+.+|...+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-----------~~iq~LaL~Vi~~~Tan~~Cv~~~ 1809 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-----------PKLQILALQVILLATANKECVTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-----------chHHHHHHHHHHHHhcccHHHHHH
Confidence 45678899999887 6765444332 4777788888865543 289999999998888899999999
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh-ccCCHHHHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALR 232 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~ 232 (715)
...+.+..|+.+|.+.. ..++.++.+|..|++ +++......+.|++..+..++ .+..+..+..++..++
T Consensus 1810 a~~~vL~~LL~lLHS~P---------S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHSQP---------SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HhhhHHHHHHHHHhcCh---------HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 99999999999998754 889999999999997 555656677788888877655 4567889999999999
Q ss_pred HHhcCC---hhhHHHHHh----------CCChHHHHHhhcC--CCH------HHHHHHHHHHHHhhcC-------Ch---
Q 005088 233 TLAFKN---DENKNQIVE----------CNALPTLILMLRS--EDS------AIHYEAVGVIGNLVHS-------SP--- 281 (715)
Q Consensus 233 ~L~~~~---~~~~~~~~~----------~g~l~~L~~ll~~--~~~------~v~~~a~~~L~~L~~~-------~~--- 281 (715)
.|..+. |..+..+++ .+.-+..++.+.. +++ ..+...-..+..+... ++
T Consensus 1880 Kl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~ 1959 (2235)
T KOG1789|consen 1880 KLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVK 1959 (2235)
T ss_pred HhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 998532 111111111 1222455555543 222 2333333344433210 00
Q ss_pred ----hH------------------HHHHHH------------cCChHHHHhhhccCCh--HHHHHHHHHHHHHhcCCcch
Q 005088 282 ----NI------------------KKEVLA------------AGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDC 325 (715)
Q Consensus 282 ----~~------------------~~~~~~------------~g~l~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~ 325 (715)
+. +..+.. .|.+..+..++...++ ....-...++..+.+..+..
T Consensus 1960 W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~L 2039 (2235)
T KOG1789|consen 1960 WNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNL 2039 (2235)
T ss_pred ccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcch
Confidence 00 001111 1234444455543322 22222333444555566776
Q ss_pred hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 326 ~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
...+-.-|.+|.++..+...+..+-..|+..|..|+.+. ...+.....+..++..+...-. ....|+.+|..+..
T Consensus 2040 ADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~ 2116 (2235)
T KOG1789|consen 2040 ADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMK 2116 (2235)
T ss_pred hhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHH
Confidence 677777899999999987655555578999999999888 6777777777777777754432 34578888877753
No 106
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.18 E-value=1.8e-05 Score=64.84 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=102.8
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
+.+++...-|.|.+-+|-+-..+.+.+++..++..|...+. .+.+.+++.|.|+|. ++.+...+.+.+++|
T Consensus 32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--------~LvefgIgglCNlC~-d~~n~~~I~ea~g~p 102 (173)
T KOG4646|consen 32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--------LLVEFGIGGLCNLCL-DKTNAKFIREALGLP 102 (173)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--------HHHHHhHHHHHhhcc-ChHHHHHHHHhcCCc
Confidence 88999999999999999999999999999999999998876 899999999999997 666777899999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.++..+.++...+...++.++..|+..+...+..+....++..+.+.-
T Consensus 103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 999999999999999999999999977666677776655555554444
No 107
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0014 Score=69.84 Aligned_cols=375 Identities=17% Similarity=0.150 Sum_probs=218.5
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHH-HHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHH
Q 005088 60 SAQVNVLNTTFSWLEADRAAAKRATHV-LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (715)
Q Consensus 60 ~~lv~~L~~~l~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (715)
..+..+|.+- .|. .+.+|+.- ++-++.+.+... ..|..++..-+.+. +|+...--
T Consensus 38 ~dL~~lLdSn-----kd~-~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~------------EVKkLVyv 93 (968)
T KOG1060|consen 38 DDLKQLLDSN-----KDS-LKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNI------------EVKKLVYV 93 (968)
T ss_pred HHHHHHHhcc-----ccH-HHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCH------------HHHHHHHH
Confidence 3455566654 222 45666654 444555544333 36777777777777 88888877
Q ss_pred HHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc
Q 005088 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (715)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 217 (715)
-|...+ .+++.. .=.|..+-+-|+++++ .++..|+++|..+=. -++..-.+-++-++..
T Consensus 94 YLlrYAEeqpdLA-----LLSIntfQk~L~DpN~--------LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~ 153 (968)
T KOG1060|consen 94 YLLRYAEEQPDLA-----LLSINTFQKALKDPNQ--------LIRASALRVLSSIRV-------PMIAPIMLLAIKKAVT 153 (968)
T ss_pred HHHHHhhcCCCce-----eeeHHHHHhhhcCCcH--------HHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhc
Confidence 777777 555442 1136677788888776 788878777776521 1111112334556667
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~ 297 (715)
+..+.||..|+.+|-.|-.-+++.+.. +++.+-.+|.+.++.|...|+.+...+|-.. ...+ .+-...+.
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--HknyrklC 223 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLC 223 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHH
Confidence 888999999999999998766665553 3556777888899999999999998886432 2222 33455566
Q ss_pred hhhccCChHHHHHHHHHHHHHhcC---Ccch---------------------hHHHhhcC----ChHHHHHHhCCCCHHH
Q 005088 298 GLLSSCCSESQREAALLLGQFAAT---DSDC---------------------KVHIVQRG----AVRPLIEMLQSPDVQL 349 (715)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~---~~~~---------------------~~~~~~~~----~l~~L~~~L~~~~~~v 349 (715)
.+|.+-+.--+.-....|...|.. +|.. +..+...- +++..-.+|.+.++.|
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 666554433333344444443321 1100 01111111 1223334567788999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC-----------------CchhhHHHhh
Q 005088 350 REMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-----------------EDNVADFIRV 412 (715)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----------------~~~~~~l~~~ 412 (715)
..+++.+.+.++-.. -...+++.|+++|.++. .+|...+..+..++.. ++....+.+-
T Consensus 304 VmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKl 378 (968)
T KOG1060|consen 304 VMAVAQLFYHLAPKN----QVTKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKL 378 (968)
T ss_pred HHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHH
Confidence 999999999888654 12234677888775542 3445455555444311 1111112221
Q ss_pred cccccccc-----------chhhhhhhhhHHHHHHHHHHHH------HhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 413 GGVQKLQD-----------GEFIVQATKDCVAKTLKRLEEK------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 413 ~~i~~L~~-----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
..+..|.. ..+....+...+..+++.+... +....+.-|+.+|.+.+..|...++-.|..|..
T Consensus 379 eiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 379 EILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 22222211 0111222334555555555443 366788999999999999999999999999866
Q ss_pred CCccchhhhcCCcHHHHHHHhc
Q 005088 476 PDDQRTIFIDGGGLELLLGLLG 497 (715)
Q Consensus 476 ~~~~~~~~~~~~~i~~L~~ll~ 497 (715)
....+.. ..+..|..++.
T Consensus 459 ~~p~~h~----~ii~~La~lld 476 (968)
T KOG1060|consen 459 KDPAEHL----EILFQLARLLD 476 (968)
T ss_pred hChHHHH----HHHHHHHHHhh
Confidence 5443321 23455666653
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.13 E-value=7.3e-05 Score=82.75 Aligned_cols=282 Identities=16% Similarity=0.038 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc----CChhhHH
Q 005088 78 AAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQQ 151 (715)
Q Consensus 78 ~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~----~~~~~~~ 151 (715)
..+..|+..|..++.. ++.+- .-++|.++.++.++.. +||..|+.+|..+. +-+..-.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCcccc
Confidence 3578888888888872 33221 2368999999999988 99999999998876 2333344
Q ss_pred HHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHH
Q 005088 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (715)
Q Consensus 152 ~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L 231 (715)
.++..-.+|.|-.++.+.+.. .++..-+.+|..|+.... .|.+.+.-.....++.+++.+ ..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~ 563 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TA 563 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------cc
Confidence 455556788888888775442 566666677777764111 122111111222233333332 00
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHH
Q 005088 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (715)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a 311 (715)
.... .......+. .++-+....++.++++-|+...+..|.-||.- ..+.-.+.-+++.|+..|++.++.+|..-
T Consensus 564 ~~~~--~~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aF 637 (1431)
T KOG1240|consen 564 PEQN--YNTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAF 637 (1431)
T ss_pred cccc--cchHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHH
Confidence 0000 011111121 12334556677777888888888888877531 11111223378999999999988887654
Q ss_pred HHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHH
Q 005088 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQH 390 (715)
Q Consensus 312 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~ 390 (715)
...+.-++. .....-++..++|.|.+.|.++.+.|...|+.+|..|+... -+...-..+++....+|-+++.-||.
T Consensus 638 fdsI~gvsi---~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~ 714 (1431)
T KOG1240|consen 638 FDSIVGVSI---FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRR 714 (1431)
T ss_pred HhhccceEE---EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHH
Confidence 444444332 11112244567899999999999999999999999999877 22222223556666677889999999
Q ss_pred HHHHHHHhccCC
Q 005088 391 NAAFALYGLADN 402 (715)
Q Consensus 391 ~a~~~L~~l~~~ 402 (715)
.++..|...++.
T Consensus 715 ~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 715 AVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 109
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=0.00024 Score=78.04 Aligned_cols=404 Identities=19% Similarity=0.135 Sum_probs=246.9
Q ss_pred hhhhhhhhhhhccccCCCCCchhHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc---Ch-hhHHHHHhcC
Q 005088 29 DEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK---NE-EVVNWIVEGG 104 (715)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~---~~-~~~~~~~~~g 104 (715)
.+..+|..+.+...........+... ....+++.+.+....+ ++ .++..|...+.++.. .+ +.. ..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~---~~s~v~~~~~~L~~Dd-qd-sVr~~a~~~~~~l~~l~~~~~d~~-----~~ 316 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEI---VKSEVLPTLIQLLRDD-QD-SVREAAVESLVSLLDLLDDDDDVV-----KS 316 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHH---HHhhccHHHhhhhhcc-hh-hHHHHHHHHHHHHHHhcCCchhhh-----hh
Confidence 55566777766553222222222222 2222333333332222 22 367777777777765 23 222 23
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
..+.+++..++.+. .++.........++ -+++. .....++....+++.... +.+
T Consensus 317 ~~~~l~~~~~d~~~------------~v~~~~~~~~~~L~~~~~~~~----~~~~~~~~~~~l~~~~~~--------e~r 372 (759)
T KOG0211|consen 317 LTESLVQAVEDGSW------------RVSYMVADKFSELSSAVGPSA----TRTQLVPPVSNLLKDEEW--------EVR 372 (759)
T ss_pred hhHHHHHHhcChhH------------HHHHHHhhhhhhHHHHhcccc----CcccchhhHHHHhcchhh--------hhh
Confidence 56778888777666 77777777777766 22211 223346777777777654 666
Q ss_pred HHHHHHHHHHhc-cCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC
Q 005088 183 RRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (715)
Q Consensus 183 ~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 261 (715)
..++.-...++. .+......+.....+|.+-.++.+.+..++.+.+..+..+.--.+ +...+ ....+.++..+++.
T Consensus 373 ~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de 449 (759)
T KOG0211|consen 373 YAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDE 449 (759)
T ss_pred HHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchh
Confidence 666666666652 233333444555667888888888888888887777776653222 11111 34678888899999
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHH
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 341 (715)
.+.|+....+.+..+-..++...........++.+..+-.+..+.++....+.+..++.... ..+.+...-+.+..+
T Consensus 450 ~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~ 526 (759)
T KOG0211|consen 450 DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTW 526 (759)
T ss_pred hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhh
Confidence 99999999988877755555555566667778888888888888999998888888875222 344444556667777
Q ss_pred hCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccc
Q 005088 342 LQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 421 (715)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~ 421 (715)
+.+....++++|+..+..++............++.++.+..+++...|...+.++..++.- ....+.....++.+...
T Consensus 527 l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v--~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 527 LPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV--LGQEITCEDLLPVFLDL 604 (759)
T ss_pred hhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH--hccHHHHHHHhHHHHHh
Confidence 7778889999999999998877755555566777777777777788888888877766421 11122222223332221
Q ss_pred hhhhh-hhhhHHHHHHHHHH-----HHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 005088 422 EFIVQ-ATKDCVAKTLKRLE-----EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 474 (715)
Q Consensus 422 ~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 474 (715)
..+.- ..+.-++..++.+- ....+.+.+.+..+..+++.+++..|..+++.+.
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 11111 11111222222222 2235566777777777888889998888777663
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.08 E-value=0.00015 Score=76.53 Aligned_cols=273 Identities=18% Similarity=0.149 Sum_probs=179.6
Q ss_pred HHHHHhccCccchhHHHhcCCcHHHHHhh----------ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 005088 188 AITNLAHENSSIKTRVRMEGGIPPLVELL----------EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (715)
Q Consensus 188 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 257 (715)
+|.-++. ++.....+....++..|.++. ...++.+...|+++|+|+...++..+..+.+.|+.+.++..
T Consensus 4 ~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 4 TLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 3444443 333333344444455555444 34568899999999999999999999999999999999999
Q ss_pred hcCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHhhhcc-----------------CChHHHHHHHHH
Q 005088 258 LRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS-----------------CCSESQREAALL 314 (715)
Q Consensus 258 l~~~-----~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~-----------------~~~~~~~~a~~~ 314 (715)
++.. +.++.....+.|--++......+..+++ .+++..+...+.. .+.....+++.+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9876 7788888888888887777777766665 4777777776642 123456778889
Q ss_pred HHHHhcCCcchhHHHhhcCChHHHHHHhC---------CCCHHHHHHHHHHHHHhHHHHHHH--------------HHhc
Q 005088 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------SPDVQLREMSAFALGRLAQVITAG--------------IAHN 371 (715)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~---------~~~~~v~~~a~~~L~~l~~~~~~~--------------l~~~ 371 (715)
+.|+....+.... -.....++.++.++. .+......+++.+|.|+-...... ....
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 9999765554432 011223344433321 133556778888888884333111 1122
Q ss_pred CChHHHHHhhcc----C----ChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHH
Q 005088 372 GGLVPLLKLLDS----K----NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 443 (715)
Q Consensus 372 ~~l~~L~~ll~~----~----~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (715)
..+..|+.+|.. . -.+...-.+.+|.++++..+..+..++..++|.+.+...... .
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e----------------~ 305 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPE----------------K 305 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCC----------------C
Confidence 345566666621 1 124556777788888877777777777777777654222111 1
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc
Q 005088 444 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 444 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 478 (715)
...+-.+|++++.++.+.++..++..|..|+....
T Consensus 306 ~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 306 GDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 33467899999999999999999999999975543
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.06 E-value=0.00058 Score=70.26 Aligned_cols=187 Identities=31% Similarity=0.370 Sum_probs=141.8
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (715)
..++.+..++.+.+. .++..+.+.+..+- ....++.+..++.+.++.++..+..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~--------~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~ 103 (335)
T COG1413 43 EAADELLKLLEDEDL--------LVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD 103 (335)
T ss_pred hhHHHHHHHHcCCCH--------HHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Confidence 357888888888743 77888887765553 23467899999999999999999998887763
Q ss_pred CChhhHHHHHhCCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC-----------
Q 005088 237 KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----------- 304 (715)
Q Consensus 237 ~~~~~~~~~~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~----------- 304 (715)
+ ..++.|+.++. +++..+|..+.++|+.+-.. . .+..++..+.+..
T Consensus 104 --~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~---------a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 104 --P---------EAVPPLVELLENDENEGVRAAAARALGKLGDE--R---------ALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred --h---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--h---------hhHHHHHHhccchhhhhhhhccch
Confidence 2 36788888888 58999999999999998321 1 2556666666644
Q ss_pred -hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhcc
Q 005088 305 -SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDS 383 (715)
Q Consensus 305 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~ 383 (715)
..++..+...++.+- +...++.+...+.+.+..+|..+..+|+.+.... ..+.+.+...+.+
T Consensus 162 ~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~ 224 (335)
T COG1413 162 LLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSD 224 (335)
T ss_pred HHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcC
Confidence 135666666666653 2345788899999989999999999998886432 2456778888899
Q ss_pred CChhHHHHHHHHHHhccC
Q 005088 384 KNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 384 ~~~~v~~~a~~~L~~l~~ 401 (715)
.+..++..++.+|+.+-.
T Consensus 225 ~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 225 ESLEVRKAALLALGEIGD 242 (335)
T ss_pred CCHHHHHHHHHHhcccCc
Confidence 999999999999998753
No 112
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00074 Score=67.06 Aligned_cols=222 Identities=17% Similarity=0.173 Sum_probs=166.6
Q ss_pred CccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCCh---------hhHHHHHhCCChHHHHHhhcCCCH---
Q 005088 196 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND---------ENKNQIVECNALPTLILMLRSEDS--- 263 (715)
Q Consensus 196 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~---------~~~~~~~~~g~l~~L~~ll~~~~~--- 263 (715)
-|..-..+++.++++.|+.+|.+.+.++..++...|..|+..+. .....+++.++++.|+.-+..-++
T Consensus 114 ~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 114 MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 56666678899999999999999999999999999999985321 124556778888988887754332
Q ss_pred ---HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-C-hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHH
Q 005088 264 ---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-C-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (715)
Q Consensus 264 ---~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 338 (715)
.-...++..+-|+..-.+..+..+.+.|.+..|+.-+... . ......|..++.-+...+..++..+..-+++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 3456678889999888888999999999999988865543 2 3445566667777666666688888888899988
Q ss_pred HHHhC---CC------CHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC---c
Q 005088 339 IEMLQ---SP------DVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE---D 404 (715)
Q Consensus 339 ~~~L~---~~------~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~ 404 (715)
++-+. .. ..++.++...+||.+.... +..+....++..+.-+++. ....+..++++|-....++ +
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP 352 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence 88772 11 3457778888888877776 8888888898887777766 4556788888888876554 5
Q ss_pred hhhHHHhhcccccc
Q 005088 405 NVADFIRVGGVQKL 418 (715)
Q Consensus 405 ~~~~l~~~~~i~~L 418 (715)
++..|++.+|+..+
T Consensus 353 ~C~kfVe~lGLrti 366 (536)
T KOG2734|consen 353 NCNKFVEILGLRTI 366 (536)
T ss_pred HHHHHHHHHhHHHH
Confidence 77778887765543
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.02 E-value=2.5e-05 Score=80.14 Aligned_cols=264 Identities=16% Similarity=0.110 Sum_probs=164.2
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
+..++.+|++..+.++..|+...+.|+.- +-.....+...| ..|..-+....+++.-..+.+++.+.....-..-+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44566778888999999999988888741 001112233322 34666777789999988888888885432111011
Q ss_pred HHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHH
Q 005088 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITA 366 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 366 (715)
--..|++|.|..+|.+.+..+..+....++.+|...++....--=..+.-.|++.|++.+.++|++|...++.++..-
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai-- 761 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI-- 761 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc--
Confidence 113689999999999999999999999999999776653211000123456788888899999999999999887533
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhh
Q 005088 367 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 446 (715)
Q Consensus 367 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (715)
.-.+++..|++-|+.++-..|....-++.-.+... | .-.
T Consensus 762 --GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c---------g------------------------------pfs 800 (975)
T COG5181 762 --GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC---------G------------------------------PFS 800 (975)
T ss_pred --CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc---------C------------------------------chh
Confidence 11123334444444443333322222222222110 0 112
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc--cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 447 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 447 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
++|.|..--..++..||.-.+++++.+...-. ++..+ -...|.|...+.+.++..|.-|+..+..|+-+.+
T Consensus 801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 45555555556777888888888888744322 22221 1345667777788888888888888888877643
No 114
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00011 Score=76.35 Aligned_cols=184 Identities=17% Similarity=0.139 Sum_probs=112.7
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----h
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----N 282 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-----~ 282 (715)
++..|..+..+.+..|+..|+..|..|..+..-.+ -.....++++.+++.+||..|+..++-.....+ +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33447788888889999999999988885322211 134567889999999999999776655543221 1
Q ss_pred HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHh-
Q 005088 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRL- 360 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l- 360 (715)
....-....++..+...+.+.+..+|.+|+.+|+.+-..+++......+..++..+-..-.. ..+. ....+-
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk------~l~s~Ge 346 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK------ALYSSGE 346 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH------HHHhcCC
Confidence 11222234467788889999999999999999998865554444444433333322111100 0010 000010
Q ss_pred -HH------------HH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC
Q 005088 361 -AQ------------VI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 361 -~~------------~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 403 (715)
+. .+ ...++..|+...++.-+.+.-.+||.+|+..++.|+.+.
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss 404 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS 404 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC
Confidence 00 00 334566677777777777777788888888888886543
No 115
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.96 E-value=0.0027 Score=65.26 Aligned_cols=214 Identities=33% Similarity=0.375 Sum_probs=161.3
Q ss_pred CChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 104 g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
..++.+++++.+.+. .++..+.+.++.+... .+++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGSE----------EAVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCH--------HHHH
Confidence 357888899988866 8999999887666422 258889999988775 8888
Q ss_pred HHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC
Q 005088 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (715)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 262 (715)
.++.+|+.+- ....++.++.++. +++..++..+.++|..+-.. ..+..++..+.+..
T Consensus 93 ~a~~aLg~~~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELG-----------DPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccC-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccch
Confidence 9998777763 1346788999888 68899999999999998742 23666777776654
Q ss_pred H------------HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHh
Q 005088 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (715)
Q Consensus 263 ~------------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (715)
. .++..+...|+.+- ....++.+...+.+....++..++.+|+.+....
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 2 45666666666651 1225778888999888899999999999987533
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005088 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 397 (715)
Q Consensus 331 ~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 397 (715)
..+.+.+...+.+.+..+|..++.+|+.+-. ......+...+.+.++.++..+...+.
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGD--------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 3456788889999999999999999987642 345677788888888877776666665
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.95 E-value=0.00039 Score=77.28 Aligned_cols=284 Identities=15% Similarity=0.101 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHH
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLI 255 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~~~~~~~~~~~g~l~~L~ 255 (715)
+.+..|+..|..++.-.. ....-..++|.++.++.++...||..|+.+|..+... .+.+...+.+ -++|.|-
T Consensus 438 ~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~ 513 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLN 513 (1431)
T ss_pred hhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhH
Confidence 677888888888874211 1122246789999999999999999999998877631 1222333333 3678888
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCC
Q 005088 256 LMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (715)
Q Consensus 256 ~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (715)
.++.+ ....+|..-+..|+.|+...- .+.+.+.-.....++++.+.+. .. ...-+....-+..++
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset-------~~---~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET-------AP---EQNYNTELQALHHTV 579 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc-------cc---ccccchHHHHHHHHH
Confidence 88888 456677777788888854211 1111111111122233332220 00 000011111111334
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhcc
Q 005088 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 414 (715)
Q Consensus 335 l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 414 (715)
-+....+|.++++-|++.-+..|+-|+.-..+.=.+.-++..|+..|+++++.+|..-...|..++..-..+
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-------- 651 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-------- 651 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--------
Confidence 456677788888899998888888887655333334456788999999999998887777766554221100
Q ss_pred ccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHH
Q 005088 415 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG 494 (715)
Q Consensus 415 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ 494 (715)
-....++|.|.+-|.++.+-|...|+++|..|+...--++.-+ ...++....
T Consensus 652 ---------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~P 703 (1431)
T KOG1240|consen 652 ---------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLP 703 (1431)
T ss_pred ---------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhh
Confidence 0123356666777778888888888888888877665444321 244555666
Q ss_pred HhcCCCcchhhhhHHHHHHhhhh
Q 005088 495 LLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 495 ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
++.++|.=+|..++..+......
T Consensus 704 lL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 704 LLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred heeCchHHHHHHHHHHHHHHHhh
Confidence 77788888888888777666553
No 117
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.005 Score=61.42 Aligned_cols=265 Identities=18% Similarity=0.161 Sum_probs=189.4
Q ss_pred HHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCC----------hhhHH
Q 005088 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK----------PEHQQ 151 (715)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~----------~~~~~ 151 (715)
....-+..++.-|+.-..+++.++|+.|+++|.+.+. ++-...+..|..|.+. ...-.
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevLid 170 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVLID 170 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHHHH
Confidence 3456666677778887889999999999999999998 8899999999998831 13456
Q ss_pred HHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-c-CCHHHHHHHHH
Q 005088 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-F-TDTKVQRAAAG 229 (715)
Q Consensus 152 ~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~-~~~~v~~~a~~ 229 (715)
++++.++++.|++-++.-+...... ..-...+...+-|+..-.+.....+++.|.+.-|+.-+. . +-..-...|..
T Consensus 171 aLvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasE 248 (536)
T KOG2734|consen 171 ALVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASE 248 (536)
T ss_pred HHHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHH
Confidence 7788899999999887654421111 144567788888988777888888888877776666333 2 33455678888
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHhhc-----C----CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhh
Q 005088 230 ALRTLAFKNDENKNQIVECNALPTLILMLR-----S----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-----~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 300 (715)
+|.-+.+++.+++.....-.++..+++-+. + +..+.-.+...+|+.+... +.++..+....++....-++
T Consensus 249 iLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lml 327 (536)
T KOG2734|consen 249 ILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLML 327 (536)
T ss_pred HHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHH
Confidence 999888877778888888888888887653 1 1346677778888887554 66778888888888766666
Q ss_pred ccCChHHHHHHHHHHHHHhcCCc--chhHHHhhcCChHHHHHHhC-C---------CCHHHHHHHHHHHHHhHH
Q 005088 301 SSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEMLQ-S---------PDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~~L~-~---------~~~~v~~~a~~~L~~l~~ 362 (715)
+. ....+..+..+|-....+++ .+...+++..++..+..+.. . .....-++.+..|+.+-.
T Consensus 328 r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 328 RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 65 45567778888888877665 56666777777777666543 2 223445566666665544
No 118
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.88 E-value=1.6e-05 Score=52.46 Aligned_cols=40 Identities=45% Similarity=0.667 Sum_probs=36.7
Q ss_pred ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc
Q 005088 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (715)
Q Consensus 93 ~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (715)
+++++..+++.|++|.|+++|++.+. +++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~------------~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP------------EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH------------HHHHHHHHHHHHHh
Confidence 46788899999999999999998777 99999999999986
No 119
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0044 Score=65.32 Aligned_cols=271 Identities=14% Similarity=0.152 Sum_probs=159.4
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
--...|+.+++|+. +.+.++.+. +.+-++|.+.+.. .-++..++-||..|-..++.... ..+...
T Consensus 126 ~fv~LAL~~I~niG-~re~~ea~~-----~DI~KlLvS~~~~------~~vkqkaALclL~L~r~spDl~~---~~~W~~ 190 (938)
T KOG1077|consen 126 TFVCLALHCIANIG-SREMAEAFA-----DDIPKLLVSGSSM------DYVKQKAALCLLRLFRKSPDLVN---PGEWAQ 190 (938)
T ss_pred HHHHHHHHHHHhhc-cHhHHHHhh-----hhhHHHHhCCcch------HHHHHHHHHHHHHHHhcCccccC---hhhHHH
Confidence 55566777777775 334444433 2233666665432 27888899999999876665322 234668
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc-------------CCCHHHHHHHHHHHHHhh
Q 005088 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------------SEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-------------~~~~~v~~~a~~~L~~L~ 277 (715)
.++.+|.+.+-.+..++...+..|+..+++....-.. -.+..|..+.. -+.|=++..+++.|.++-
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 9999999988888888888888888766654322111 11222222221 134556777777777772
Q ss_pred cC-ChhHHHHHHHcCChHHHHhhhccC--Ch-----HHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHH
Q 005088 278 HS-SPNIKKEVLAAGALQPVIGLLSSC--CS-----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (715)
Q Consensus 278 ~~-~~~~~~~~~~~g~l~~L~~ll~~~--~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v 349 (715)
.- ++..+..+ ..++..++...+.. .. ..+...++-.-+++.+-+.....+. ..+..|-+++.+....+
T Consensus 270 ~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 270 TPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNI 345 (938)
T ss_pred CCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccc
Confidence 21 11111111 12333344333321 11 1222233333444443333333333 35678888898889999
Q ss_pred HHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhh
Q 005088 350 REMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 424 (715)
Q Consensus 350 ~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~ 424 (715)
|--|+..++.|+... ....+... .+.++..|+ ..+..+|+.|+..|..+|.. +|.+.+++ +.++.|..+.+.
T Consensus 346 RYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~-elLqYL~tAd~s 419 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVA-ELLQYLETADYS 419 (938)
T ss_pred hhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHH-HHHHHHhhcchH
Confidence 999999999988776 32233333 677888886 88999999999999999854 45555554 344444444433
No 120
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=3.1e-05 Score=51.13 Aligned_cols=40 Identities=40% Similarity=0.643 Sum_probs=37.6
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 238 ~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
+++++..+++.|+++.|+.++.+++++++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999999996
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0014 Score=74.89 Aligned_cols=324 Identities=15% Similarity=0.091 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
|.-+..|+.-++.++....+--+ -.-...+|.|.+.=.+++..++.+-..+=..|.. ++.....-.-..+++.|+.-+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~-p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~-D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLE-PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT-DSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhh-hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHhc
Confidence 56667777777777743321111 1112466777777778888887655554444543 333222211234677777777
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHhhhccCChHHHHHH---HHHHHHHhcC--Cc--chhHHH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQREA---ALLLGQFAAT--DS--DCKVHI 329 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll~~~~~~~~~~a---~~~L~~l~~~--~~--~~~~~~ 329 (715)
.+....||+.+|.+|..|..+.+.. .+.+ ..+...+...+.+-...+|..| +.+|+.+|.. +. .....-
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 8888999999999999998775532 2221 2345556666666566676654 5566666531 11 111111
Q ss_pred hhcCChHHHHHH-hCCCCHHHHHHHHHHHHHhHHHHHHHH--HhcCChHHHHHhhccCChhHHH-HHHHHHHhccCCCch
Q 005088 330 VQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITAGI--AHNGGLVPLLKLLDSKNGSLQH-NAAFALYGLADNEDN 405 (715)
Q Consensus 330 ~~~~~l~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~l--~~~~~l~~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~ 405 (715)
.-..++|.|++- +-+.-+++|..++.++..|+......+ .-...++.|++....-++.|.. .++++ .|... +.
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~--ea 1203 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET--EA 1203 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH--HH
Confidence 112345555532 225678999999999999998882222 2335677777777766665533 23332 22110 00
Q ss_pred hhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHHHHHHhhcCCCccchhhh
Q 005088 406 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFI 484 (715)
Q Consensus 406 ~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~ 484 (715)
......+++ +......+ +-..++.++.-.-..++|+++++++++ ....+..++..+..|+..-...-.-.
T Consensus 1204 lDt~R~s~a-----ksspmmeT----i~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~ 1274 (1702)
T KOG0915|consen 1204 LDTLRASAA-----KSSPMMET----INKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY 1274 (1702)
T ss_pred HHHHHHhhh-----cCCcHHHH----HHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc
Confidence 000111100 00111111 222334444445556788999999887 66788888888887754321111111
Q ss_pred cCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 485 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 485 ~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
....+..+....++.|+.++...+.|+..|..-+
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 2234667777888899999999999988888753
No 122
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0002 Score=74.50 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=141.0
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHH---HHHHHhc--cCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHH
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAAD---AITNLAH--ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~---~L~~L~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (715)
....++++++... .++..|+. +++|.+. ...+..+.=....+...+...+.+.+..++..|..+|+.
T Consensus 236 Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHhcchHH--------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence 4456667776655 77777754 4555541 111111111112345667777778888899999998887
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHh--h-----------cCChhHHHHHHHcCChHHHHhh
Q 005088 234 LAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNL--V-----------HSSPNIKKEVLAAGALQPVIGL 299 (715)
Q Consensus 234 L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L--~-----------~~~~~~~~~~~~~g~l~~L~~l 299 (715)
+-.-+++......+..++..+-+-- .+.-+ -....+- + ...++....++..|....++.-
T Consensus 308 ~~~vSee~i~QTLdKKlms~lRRkr~ahkrp------k~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhG 381 (823)
T KOG2259|consen 308 FEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP------KALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHG 381 (823)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhcccch------HHHHhcCCcccCccccccCchhhccccccccccccccceeeee
Confidence 7754444433333322222111100 00000 0011111 0 0012233567788999999999
Q ss_pred hccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHH
Q 005088 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLK 379 (715)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ 379 (715)
|++.-.+||+.|...+..|+...+.... ..+..|++++++....||..|..+|..++.+. .++..-++.++.
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~ 453 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVHL---AIREEQLRQILE 453 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---eecHHHHHHHHH
Confidence 9998899999999999999987776543 34689999999999999999999999998764 233445678889
Q ss_pred hhccCChhHHHHHHHHHHhc
Q 005088 380 LLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 380 ll~~~~~~v~~~a~~~L~~l 399 (715)
.|.+.+..+|...-..|.+.
T Consensus 454 ~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHhcCHHHHHHHHHHHHhc
Confidence 99999999999988888876
No 123
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.80 E-value=0.0015 Score=69.08 Aligned_cols=188 Identities=19% Similarity=0.209 Sum_probs=124.0
Q ss_pred HHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHH
Q 005088 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH 161 (715)
Q Consensus 83 a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~ 161 (715)
|+.+|.-+++++.....+....++..|+.+-.-.... .......++++...|++||.|+. .++..|....+.|..+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~--~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESD--EDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccc--cccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 3556777777777777777777777777665221100 00112235599999999999999 99999999999999999
Q ss_pred HHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc-CCcHHHHHhhcc-----------------CCHHH
Q 005088 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-----------------TDTKV 223 (715)
Q Consensus 162 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-g~i~~L~~ll~~-----------------~~~~v 223 (715)
++..|+...+... +.++.-...+.|.-++......+..+.+. +++..+...+.. .+...
T Consensus 79 l~~~Lk~~~~~~~---~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 155 (446)
T PF10165_consen 79 LCERLKNYSDSSQ---PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA 155 (446)
T ss_pred HHHHHHcccccCC---ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence 9999998743211 12777778888888877677776666554 677777665531 13456
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc-------C--CCHHHHHHHHHHHHHh
Q 005088 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------S--EDSAIHYEAVGVIGNL 276 (715)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-------~--~~~~v~~~a~~~L~~L 276 (715)
...+++++.|+....+.... -...+.++.++.++. . +.......++.+|.|+
T Consensus 156 l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 156 LSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 77889999999865444332 011233444443322 1 2346778888888888
No 124
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.026 Score=58.36 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
-+.-.++..+..++..+ ....+. ...+..|-.+|+++....+-.|+++|..|+...|.... -+=+.+-.++.
T Consensus 279 mV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-----vcN~evEsLIs 350 (898)
T COG5240 279 MVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-----VCNKEVESLIS 350 (898)
T ss_pred hhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-----ecChhHHHHhh
Confidence 55666777777776433 122222 24567788888888899999999999999975554211 11234455666
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHH
Q 005088 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 339 (715)
+.+..+...|+.+|..- ++++....+ +..+...+.+-+...+.-+..++..++-.-|..+..+ +..|.
T Consensus 351 d~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~ 418 (898)
T COG5240 351 DENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY-----LDFLG 418 (898)
T ss_pred cccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH-----HHHHH
Confidence 67777766666666543 444443333 2223333333222333334444444543334333322 34555
Q ss_pred HHh-CCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhccCCCchhhHHHhhcccc
Q 005088 340 EML-QSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 416 (715)
Q Consensus 340 ~~L-~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~ 416 (715)
..| +.+..+.+..+..+|..+.... .. ...++..|+..+.+ ..+++....+.+|+.=.-...+
T Consensus 419 ~~L~~eGg~eFK~~~Vdaisd~~~~~p~s---kEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~----------- 484 (898)
T COG5240 419 SSLLQEGGLEFKKYMVDAISDAMENDPDS---KERALEVLCTFIEDCEYHQITVRILGILGREGPRAKT----------- 484 (898)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhhCchH---HHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC-----------
Confidence 544 3456667777777776665443 00 11123444555532 2233333333333221100000
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHh
Q 005088 417 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 496 (715)
Q Consensus 417 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll 496 (715)
.+..+..+..-+--.+.-+|.+|..||..++..-+.... .+.....|...+
T Consensus 485 ---------------------------P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~--~~sv~~~lkRcl 535 (898)
T COG5240 485 ---------------------------PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS--PQSVENALKRCL 535 (898)
T ss_pred ---------------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc--HHHHHHHHHHHh
Confidence 011222333333445666888899999888766443322 345566788889
Q ss_pred cCCCcchhhhhHHHHHHhhhh
Q 005088 497 GSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 497 ~~~~~~~~~~aa~~L~~L~~~ 517 (715)
++.+.++|..|+.+|.+|-..
T Consensus 536 nD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 536 NDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred hcccHHHHHHHHHHHHhhhhh
Confidence 999999999999999887643
No 125
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0013 Score=70.36 Aligned_cols=349 Identities=13% Similarity=0.088 Sum_probs=211.7
Q ss_pred HhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
+..+-++++.+.-+.+. .+..+.++......+- ++...+---+.+.+...+... .+++..+
T Consensus 31 ~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl--------elKKlvyLYl~nYa~~~P~~a-----~~avnt~ 91 (734)
T KOG1061|consen 31 KDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL--------ELKKLVYLYLMNYAKGKPDLA-----ILAVNTF 91 (734)
T ss_pred HHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc--------hHHHHHHHHHHHhhccCchHH-----Hhhhhhh
Confidence 33444556666633333 2356777777766654 778888788888887565432 3567788
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005088 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (715)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 292 (715)
+.=..++++.++..|++.++.+-. +.... .....|.+.+++.++.+|..+.-++.++-..+. +.....|+
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl 161 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGL 161 (734)
T ss_pred hccCCCCCHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccch
Confidence 888888999999998888877764 22222 246778899999999999999999999954433 45567899
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhc
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHN 371 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~ 371 (715)
++.|.+++.+.++.|...|+.+|..+...++...........+..++..+..-+..-+... |..++... ....-..
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~I---L~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFI---LDCLAEYVPKDSREAE 238 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHH---HHHHHhcCCCCchhHH
Confidence 9999999999999999999999999986555422222223334444444444333333333 33333333 2111112
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHH
Q 005088 372 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 451 (715)
Q Consensus 372 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 451 (715)
..+..+...+.+.++.+...+...+.++...............-++|..+..........+.+++..+-..... ++..-
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~ 317 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVE 317 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhH
Confidence 35566777778888888888889888887654443333333444445444333333333333333222111111 11111
Q ss_pred HHHHh--hhh-hhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhccc
Q 005088 452 LYLMR--VAE-KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 520 (715)
Q Consensus 452 ~~ll~--~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~ 520 (715)
+..+- -.+ -.++..-+.++..++....-.++ +.-|.+.-..-+.+....+.+|+.+++..-+.
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qv------l~El~eYatevD~~fvrkaIraig~~aik~e~ 383 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQV------LAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ 383 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHH------HHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh
Confidence 11111 112 25666666677777655443332 33455555567777888999999999886543
No 126
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.004 Score=62.64 Aligned_cols=391 Identities=16% Similarity=0.101 Sum_probs=188.7
Q ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHH-hcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCC----hhh
Q 005088 76 DRAAAKRATHVLAELAKN-EEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK----PEH 149 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~-~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~----~~~ 149 (715)
.+.+..+++.+|+++..+ |-.+-.+. -...+..+..++++.++ .|+..++..++.|.+. |+.
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~------------~v~vs~l~~~~~~v~t~~~~pei 187 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDV------------NVRVSSLTLLGAIVSTHAPLPEV 187 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHHHHhcCCCCHHH
Confidence 345788899999999985 43332222 13345556677777777 7888888888887732 222
Q ss_pred HHHHHhc--------------------CChHHHHHHHccccCCCc--------------------------------chh
Q 005088 150 QQLIVDN--------------------GALSHLVNLLKRHMDSNC--------------------------------SRA 177 (715)
Q Consensus 150 ~~~i~~~--------------------~~l~~L~~lL~~~~~~~~--------------------------------~~~ 177 (715)
+..+-.. ..-+.+.++-..+..... .+.
T Consensus 188 ~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ 267 (728)
T KOG4535|consen 188 QLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYE 267 (728)
T ss_pred HHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccC
Confidence 2111100 001111111111000000 112
Q ss_pred hhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC-----ChhhHHHHHhCCChH
Q 005088 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALP 252 (715)
Q Consensus 178 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-----~~~~~~~~~~~g~l~ 252 (715)
+..++..+..+|.-++.+-.-.+..+.+ ....+...+....+.+...+..++..+... .|+..+.-...|.+.
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 3456666666666666433222222221 112223333456788888888888777642 111111111111121
Q ss_pred HHHH-------hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcC---ChHHHHhhhcc-CChHHHHHHHHHHHHHhcC
Q 005088 253 TLIL-------MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSS-CCSESQREAALLLGQFAAT 321 (715)
Q Consensus 253 ~L~~-------ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g---~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 321 (715)
.++- ...+..+..+..+|.++.++.....+. +..| ..+.+..-..+ .+.-++.+|.+++..+.-+
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 1111 112234456677777787774321110 0011 01111111111 2233455556666555443
Q ss_pred CcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-------HHH--HHhcCChHHHHHhh---ccCChhHH
Q 005088 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-------TAG--IAHNGGLVPLLKLL---DSKNGSLQ 389 (715)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-------~~~--l~~~~~l~~L~~ll---~~~~~~v~ 389 (715)
..-......-......+...+.+..-..|..++|+++|++..- +.. -...-.+..+++.- ...+..|+
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3333333333445566666677777889999999999997543 000 01111122222222 12346677
Q ss_pred HHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHH-HHhhhhhhHHHHHHH
Q 005088 390 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVAL 468 (715)
Q Consensus 390 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~ 468 (715)
.++..+|+|+..-- ..+.+.+. .. +..+-+..++. ......-.|+=+||.
T Consensus 502 ~navraLgnllQvl---q~i~~~~~-------------------------~e-~~~~~~~~l~~~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 502 SNAVRALGNLLQFL---QPIEKPTF-------------------------AE-IIEESIQALISTVLTEAAMKVRWNACY 552 (728)
T ss_pred hHHHHHHhhHHHHH---HHhhhccH-------------------------HH-HHHHHHHhcccceecccccccchHHHH
Confidence 78888888774210 00111100 00 00001111111 112235679999999
Q ss_pred HHHhhcCCCccchh--hhcCCcHHHHHHHhcC-CCcchhhhhHHHHHH
Q 005088 469 ALAHLCSPDDQRTI--FIDGGGLELLLGLLGS-TNPKQQLDGAVALFK 513 (715)
Q Consensus 469 aL~~l~~~~~~~~~--~~~~~~i~~L~~ll~~-~~~~~~~~aa~~L~~ 513 (715)
+++||..++.-... -......+.|..++.+ .|=.+|..||.+|..
T Consensus 553 a~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 99999877653211 1122345677777754 788899999988843
No 127
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00027 Score=65.30 Aligned_cols=94 Identities=30% Similarity=0.464 Sum_probs=78.8
Q ss_pred EEEEecCeeecchHHHHhhccHHHHHhhcCCCC-C-CCCCceecCCCCHHHHHHHHHHHhcCCcccC--HHHHHHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR-E-KDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA 625 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~-e-~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~ll~~A 625 (715)
+.+-|+|..|..++.-|.....||+.|+.+++. + ..++.|-+ |=+|.-|..+|.||-.|.+.++ ...+.+|++=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 456789999999999999999999999998864 2 23334554 6689999999999998888765 46678999999
Q ss_pred HHhChhhHHHHHHHHHHhc
Q 005088 626 DQYLLEGLKRLCEYTIAQD 644 (715)
Q Consensus 626 ~~~~~~~L~~~~~~~l~~~ 644 (715)
.+|.+++|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987665
No 128
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.67 E-value=0.00042 Score=66.84 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=116.0
Q ss_pred ccCChHHHHHHHHHHHHHhcCC--cchhHHHhh--cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHH--HhcCCh
Q 005088 301 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGI--AHNGGL 374 (715)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l--~~~~~l 374 (715)
.+.+++.+.+++.-|..++.++ ......+.. ..++..+...+.+....+...|+.++..++...+..+ .-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567999999999999988765 222222222 2555677777887788899999999999998872222 234577
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 005088 375 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 454 (715)
Q Consensus 375 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l 454 (715)
+.|++.+.+++..++..|..+|..++.+-.....+ ..+.+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~ 139 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG 139 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence 88888888999999999999999997654311110 13445556
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCCc-cchhhhc----CCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 455 MRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 455 l~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~----~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+.+.++.+|..++..+..+..... ....+.. ...++.+...+.+.++++|..|-.++..+.+..+
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 677899999999999998865543 2222222 2467788899999999999999999999987654
No 129
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.65 E-value=0.017 Score=61.09 Aligned_cols=362 Identities=20% Similarity=0.173 Sum_probs=196.2
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (715)
+|.|+..|.+..... ..-...++.+|..+|.++..-+.+.. ..+..+-........ .+....+
T Consensus 1 ~p~ll~~Lpd~~~~~---------~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-------~~~~~~i 63 (415)
T PF12460_consen 1 LPALLALLPDSDSST---------DSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-------SDYCHAI 63 (415)
T ss_pred CchHHhhCCCCCCcc---------hhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-------hHHHHHH
Confidence 366777776665511 14566899999999977665444332 233333333332222 1666777
Q ss_pred HHHHHHHhccCccch-----hHHHhcCCcHHHHHhhcc-----C--CHHHHHHHHHHHHHHhcCChh-hHHHHHhCCChH
Q 005088 186 ADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-----T--DTKVQRAAAGALRTLAFKNDE-NKNQIVECNALP 252 (715)
Q Consensus 186 ~~~L~~L~~~~~~~~-----~~~~~~g~i~~L~~ll~~-----~--~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~g~l~ 252 (715)
+.+|.++........ ....+...++.+..+.-. . ++.+...+..++..+...-+. .+..+ +.
T Consensus 64 l~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~ 138 (415)
T PF12460_consen 64 LSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LD 138 (415)
T ss_pred HHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HH
Confidence 777777764333322 222333466777766532 1 245666666666666653333 23333 23
Q ss_pred HHHHhhc----------C------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHH
Q 005088 253 TLILMLR----------S------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLL 315 (715)
Q Consensus 253 ~L~~ll~----------~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L 315 (715)
.+..++. . .......-...+++.+-. +..-. -....+..++.+..+. ++..+..++.++
T Consensus 139 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~---~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 139 ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRK---DVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCc---ccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3333332 1 111222223344444421 11100 1112556666665543 477788888888
Q ss_pred HHHhcCCcchhHHHhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHH
Q 005088 316 GQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNA 392 (715)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a 392 (715)
+.+....+... .. ..++..+...+ ...++..+..+..++.-++..- |..-.....+..|+.++.+ +.+...+
T Consensus 215 a~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~a 289 (415)
T PF12460_consen 215 ASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQA 289 (415)
T ss_pred HHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHH
Confidence 88874311111 11 12334444333 2334444444444444333322 1111122345567777766 6778888
Q ss_pred HHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHh
Q 005088 393 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 472 (715)
Q Consensus 393 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 472 (715)
+.++.-+....+..-.-.....++.|. .+.+-..++|.|++..+..+.+.+...+.||.+
T Consensus 290 A~~f~il~~d~~~~l~~~~~a~vklLy--------------------kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 290 AKAFGILLSDSDDVLNKENHANVKLLY--------------------KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHhhHhcCcHHhcCccccchhhhHH--------------------hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 888888876522111111112222222 122344567888888888777789999999999
Q ss_pred hcCCCccchhhhc-CCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 473 LCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 473 l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
+...-+..-.+-+ ...+|.|.+-+..++++++..+..+|..+..+.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9776553333333 357889999999999999999999999888875
No 130
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.65 E-value=0.0026 Score=60.55 Aligned_cols=226 Identities=17% Similarity=0.150 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHh-cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH
Q 005088 76 DRAAAKRATHVLAELAKNEEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (715)
++-.+.-|+.++.++...++.|..+.. .-+-..++++++..-. +..++...+-+++.++.++++.+.+-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 555788899999999999999887664 4466678888876544 23889999999999998888874433
Q ss_pred h-cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCc--cchhHHHhcCCcHHHHHhhcc---CCHHHHHHHH
Q 005088 155 D-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS--SIKTRVRMEGGIPPLVELLEF---TDTKVQRAAA 228 (715)
Q Consensus 155 ~-~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~ 228 (715)
. ...+..++.+.+..... .+.+.++.++.|++...+ ....... .|-+...++.|.. .+++++...-
T Consensus 232 K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~ 303 (432)
T COG5231 232 KMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIE 303 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHH
Confidence 2 23466777777766543 888999999999996332 2233233 3434444555532 3444433222
Q ss_pred HHHHHHhc---------------------CCh---------hhHHHHHh--CCChHHHHHhhcCCCHH-HHHHHHHHHHH
Q 005088 229 GALRTLAF---------------------KND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGVIGN 275 (715)
Q Consensus 229 ~~L~~L~~---------------------~~~---------~~~~~~~~--~g~l~~L~~ll~~~~~~-v~~~a~~~L~~ 275 (715)
.+=..|.. .+| .+.+.+.+ ..++..|.++++..++. ...-||.-|..
T Consensus 304 ~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~ 383 (432)
T COG5231 304 RIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQ 383 (432)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHH
Confidence 11111111 011 12223332 24577888888887555 45557888888
Q ss_pred hhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHh
Q 005088 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (715)
Q Consensus 276 L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (715)
+....|+....+.+.|+=..++.++++++++++-+|+.++..+.
T Consensus 384 ~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 384 LVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88888999888999999999999999999999999999887765
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.64 E-value=0.00023 Score=56.73 Aligned_cols=66 Identities=29% Similarity=0.328 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005088 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (715)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (715)
+...+.+|+|+|..++.++..+.+.|+++.++.... ..+|-++++|+.++++|+.++++++..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 467889999999999999999999999999998875 467999999999999999999999988765
No 132
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.61 E-value=0.0021 Score=61.24 Aligned_cols=254 Identities=12% Similarity=0.123 Sum_probs=149.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH-HHcCChHHHHhhhccC--ChHHHHHHHHHHHHHhcCCcchhHHHhh-
Q 005088 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV-LAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ- 331 (715)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 331 (715)
++++.-++-.+.-|++++.++... ++.+... .+...-..++..+++. ..+++...+.+++-++. ++...+.+-+
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~ 233 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 444444666788899999999655 3444433 3444556677777754 46788899999999874 4444433322
Q ss_pred cCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH-HHHH---HhcCChHHHHHhhcc---CChhHHHHHHHHHHhccCCC
Q 005088 332 RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI-TAGI---AHNGGLVPLLKLLDS---KNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 332 ~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~-~~~l---~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~ 403 (715)
...+.-|+.+.+. ....|-+-++.++.|++... +..+ .-.|-+..-++.|.. .+.+++...-.+=..|..+.
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 2455666666665 45678888999999998754 2222 222333334444422 34444443333322222221
Q ss_pred chhhHH------HhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh-HHHHHHHHHHhh-cC
Q 005088 404 DNVADF------IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHL-CS 475 (715)
Q Consensus 404 ~~~~~l------~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~aL~~l-~~ 475 (715)
.....+ .+.|.+.- ...+........++..+.. -.-.++..|..++...++. .-..||.-+..+ -.
T Consensus 314 k~l~~fD~Y~~ELdsg~l~w-----Sp~H~~~dFWs~N~d~l~k-dny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEW-----SPYHHKKDFWSTNLDMLIK-DNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA 387 (432)
T ss_pred hhhhHHHHHHHHHhhCcccC-----CCcccccCchhhhHHHHhh-hhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh
Confidence 111111 11221110 0111222222222222211 1335788899999998776 334455666666 45
Q ss_pred CCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 476 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 476 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
.|+....+.+-|+-+.+.+++++++++|+..|..++..+...
T Consensus 388 ~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 388 SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 678888888889999999999999999999999998877654
No 133
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.022 Score=60.36 Aligned_cols=283 Identities=16% Similarity=0.187 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCC--HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 257 (715)
.....|+.+++|+- +.+.++.+. .-+-++|.+++ +-++..|+-+|..|-..+|+. +...+..+.++.+
T Consensus 126 ~fv~LAL~~I~niG--~re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~L 195 (938)
T KOG1077|consen 126 TFVCLALHCIANIG--SREMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHL 195 (938)
T ss_pred HHHHHHHHHHHhhc--cHhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHH
Confidence 66777888888874 344444333 23335565443 668888888888888765543 2234567889999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-------------cCChHHHHHHHHHHHHHhcC-Cc
Q 005088 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-------------SCCSESQREAALLLGQFAAT-DS 323 (715)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-------------~~~~~~~~~a~~~L~~l~~~-~~ 323 (715)
|.+.+-.+...+...+..|+..+++.....+- ..+..|..... -+.|-+....+++|.++-.. ++
T Consensus 196 L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~ 274 (938)
T KOG1077|consen 196 LDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP 274 (938)
T ss_pred hCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc
Confidence 99988888888888888888776653221110 01111111111 12455666667777766321 12
Q ss_pred chhHHHhhcCChHHHHHHhCC----CC---HHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHH
Q 005088 324 DCKVHIVQRGAVRPLIEMLQS----PD---VQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 394 (715)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~L~~----~~---~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 394 (715)
..+..+. .++..++...+. .+ ...+.+.+.-.-+++.+. ...+. ...+..|-+++.+.+..+|..|+.
T Consensus 275 ~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll-~~~~~~Lg~fls~rE~NiRYLaLE 351 (938)
T KOG1077|consen 275 STRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL-SRAVNQLGQFLSHRETNIRYLALE 351 (938)
T ss_pred hHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHhhcccccchhhhHH
Confidence 2222222 223333333331 11 111222222223333333 11111 234555666667777777777777
Q ss_pred HHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHh-hhhhhHHHHHHHHHHhh
Q 005088 395 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHL 473 (715)
Q Consensus 395 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l 473 (715)
.++.|+.+......+.. ..+.++..|+ ..|..+++.|+-.|..+
T Consensus 352 sm~~L~ss~~s~davK~-----------------------------------h~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 352 SMCKLASSEFSIDAVKK-----------------------------------HQDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHhccchHHHHHH-----------------------------------HHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 77777655322211111 1345666677 66889999999999999
Q ss_pred cCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 474 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
|..++...+ +.-+.+.+.+-+..+|+..+--+.-|+.+
T Consensus 397 cD~~Nak~I------V~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 397 CDVSNAKQI------VAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred hchhhHHHH------HHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 877666655 44578888888888888877666666664
No 134
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.61 E-value=0.00037 Score=55.52 Aligned_cols=86 Identities=31% Similarity=0.434 Sum_probs=69.9
Q ss_pred hHHHHhhh-ccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhc
Q 005088 293 LQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHN 371 (715)
Q Consensus 293 l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~ 371 (715)
++.|++.+ .+.++.++..++.+|+.+.. ...++.|+.+++++++.+|..|+.+|+.+.. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------H
Confidence 46788888 78889999999999995521 2348999999999999999999999998853 4
Q ss_pred CChHHHHHhhcc-CChhHHHHHHHHHH
Q 005088 372 GGLVPLLKLLDS-KNGSLQHNAAFALY 397 (715)
Q Consensus 372 ~~l~~L~~ll~~-~~~~v~~~a~~~L~ 397 (715)
..++.|.+++.+ .+..++..|..+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 588889998865 45667899998874
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00042 Score=69.39 Aligned_cols=305 Identities=16% Similarity=0.133 Sum_probs=162.0
Q ss_pred chHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc-----cCccchhHH
Q 005088 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-----ENSSIKTRV 203 (715)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-----~~~~~~~~~ 203 (715)
+..+|.++..+|..++..-... .+..-.+.+.+....++.. .++...+..++..+-. ..|+..+.-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~-----~~~~~~l~RvI~~~~~~~~----p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~ 338 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMT-----QAYLMELGRVICKCMGEAD----PSIQLHGAKLLEELGTGLIQQYKPDSTKAP 338 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHccCCCCC----hHHHHHHHHHHHHHHHHHhhhcCCCcccch
Confidence 3366777777777666222111 1122233333333332221 2788888888877753 122211111
Q ss_pred HhcCCcHHHH------Hhh-ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC-hHHHHHhh---cCCCHHHHHHHHHH
Q 005088 204 RMEGGIPPLV------ELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA-LPTLILML---RSEDSAIHYEAVGV 272 (715)
Q Consensus 204 ~~~g~i~~L~------~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~-l~~L~~ll---~~~~~~v~~~a~~~ 272 (715)
...|.+-.+. ... .+..+..+...|.++.++....-.+ + ..|- ...+.-++ .+.+.-++..|.++
T Consensus 339 ~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~---l-pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra 414 (728)
T KOG4535|consen 339 DQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN---L-PNDRQTLCITFLLGCNDSKNRLVKAAASRA 414 (728)
T ss_pred hhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC---C-CCcchhhhHHHHhcccchHHHHHHHHHHhh
Confidence 1112111111 111 1223556778888888887421111 0 0000 00111111 12234567777777
Q ss_pred HHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhc----CCcc---hhHHHhhcCChHHHHHHh---
Q 005088 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA----TDSD---CKVHIVQRGAVRPLIEML--- 342 (715)
Q Consensus 273 L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~---~~~~~~~~~~l~~L~~~L--- 342 (715)
+.-+.-+..-......-......+...+.+.....+..++|+++|++. +.|. ....+. .-.+..++...
T Consensus 415 ~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~ 493 (728)
T KOG4535|consen 415 LGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEA 493 (728)
T ss_pred ceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHh
Confidence 777765544433444445556666777777778889999999999874 2222 111111 11223333332
Q ss_pred CCCCHHHHHHHHHHHHHhHHHH-------HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccc
Q 005088 343 QSPDVQLREMSAFALGRLAQVI-------TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 415 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~-------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i 415 (715)
......|+.++..+|+|+.+-- -..+.+......+-...-.....|+-++|.+++||..++... +.
T Consensus 494 ~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~--lq----- 566 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP--LQ----- 566 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc--cc-----
Confidence 2256789999999999998654 111111111111111223456789999999999998776321 00
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHHHHHHhhcCCCc
Q 005088 416 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 416 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 478 (715)
+.-+.+.+++.|..++.+. |..||.+|+.+|..-.....
T Consensus 567 ------------------------~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 567 ------------------------TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ------------------------CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 1113445677888888776 88999999999987765543
No 136
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0066 Score=56.61 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-
Q 005088 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS- 344 (715)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~- 344 (715)
|+.+...|.|+- .++ .+..+++-+...+.-.+.+++.+++.+-+ .-.++.|.+.|.+
T Consensus 173 Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 173 RYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDE 230 (289)
T ss_pred HHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhh
Confidence 556666666661 122 34556677777778888999999998853 2347888888855
Q ss_pred -CCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 345 -PDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 345 -~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
..+-||..|+.+|+.++. ...++.|.+.+.+.++-|+..+.-+|-.+
T Consensus 231 ~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 678899999999998874 44677788888888888888887777654
No 137
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.56 E-value=0.0022 Score=61.86 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHhccC--ccchhHHHh--cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 005088 179 NSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254 (715)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~--~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L 254 (715)
|+.+..++.-|..++.++ ......+.. ...+..+...+.+....+...|+.++..++..-...-.... ..+++.|
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~L 99 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHH
Confidence 788999999999998766 222222221 24556777777777778999999999999863222222222 3468899
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhh---
Q 005088 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--- 331 (715)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--- 331 (715)
++.+.+....++..|..+|..++...+.. ..+ .++.+...+.+.++.+|..++..+..+....+.....+..
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 99999999999999999999997765411 111 1566777788889999999999999887644411111211
Q ss_pred -cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 332 -RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 332 -~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
..+++.+...+.+.+++||..|-.++..+....
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 346778888889999999999999998886655
No 138
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0047 Score=70.77 Aligned_cols=350 Identities=14% Similarity=0.089 Sum_probs=179.1
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
.-+..|+.-++.|+....-+..-.-...||.|.++=-+++. .++.....+...|..+....-. -.-...+.
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~--------~Vq~aM~sIW~~Li~D~k~~vd-~y~neIl~ 1042 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDK--------KVQDAMTSIWNALITDSKKVVD-EYLNEILD 1042 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcH--------HHHHHHHHHHHHhccChHHHHH-HHHHHHHH
Confidence 56677888888888322221111222345665555444432 5555444444444443232222 12234555
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhH--HHHHhCCChHHHHHhhcCCCHHHHHHH---HHHHHHhhcCChh---
Q 005088 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIVECNALPTLILMLRSEDSAIHYEA---VGVIGNLVHSSPN--- 282 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~~g~l~~L~~ll~~~~~~v~~~a---~~~L~~L~~~~~~--- 282 (715)
-|+.-+.+....+|+++|-+|.-|.++.+... +.+- .....+.+.+.+-.+.||..+ +.+|+.++....+
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 66666677789999999999999998644322 2221 344555555555566777654 5566666432111
Q ss_pred --HHHHHHHcCChHHHHhh-hccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHH-HHHHHHH
Q 005088 283 --IKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE-MSAFALG 358 (715)
Q Consensus 283 --~~~~~~~~g~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~-~a~~~L~ 358 (715)
-.+.+. ..++|.|++- +-+.-.++|+.+..++..++...+...... -...+|.|+.....-.+.+-. .++.+ .
T Consensus 1121 ~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~-~ 1197 (1702)
T KOG0915|consen 1121 GAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRL-I 1197 (1702)
T ss_pred cccHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhh-h
Confidence 111111 1234443321 113447899999999999986554432222 245677777777775555443 23333 3
Q ss_pred HhHHHH----HHHHHh-cCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHH
Q 005088 359 RLAQVI----TAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 433 (715)
Q Consensus 359 ~l~~~~----~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~ 433 (715)
|..... |..... ....+.+-.+++.-+..+.....--+..+.+..-+ +.+...|+.
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg-------------------l~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG-------------------LGTKVGCAS 1258 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC-------------------CCcchhHHH
Confidence 333222 222222 23344444455555554544444444444332111 111111111
Q ss_pred HHHHHHHHH------HhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc-cchhhhcCCcHHHHHHHhcCCCcchhhh
Q 005088 434 KTLKRLEEK------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLD 506 (715)
Q Consensus 434 ~~~~~~~~~------~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 506 (715)
....-.... ..+..+..++..+++.++.++...+.|.+.|+.... ++.. ..+..+...+..+.+..+..
T Consensus 1259 fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~q----KLie~~l~~~l~k~es~~si 1334 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQ----KLIETLLADLLGKDESLKSI 1334 (1702)
T ss_pred HHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHH----HHHHHHHHHHhccCCCccch
Confidence 111000000 245677888899999999999999999999965432 1211 22444443333334444455
Q ss_pred hHHHHHHhhhh
Q 005088 507 GAVALFKLANK 517 (715)
Q Consensus 507 aa~~L~~L~~~ 517 (715)
++..+.+++++
T Consensus 1335 scatis~Ian~ 1345 (1702)
T KOG0915|consen 1335 SCATISNIANY 1345 (1702)
T ss_pred hHHHHHHHHHh
Confidence 66666665553
No 139
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.038 Score=57.17 Aligned_cols=234 Identities=14% Similarity=0.047 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC----hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHH
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 337 (715)
++-.+.+|++.|..+-..+ . +. .-.+++.+.... .........+...+...+++.... ..|.
T Consensus 203 ~~isqYHalGlLyq~kr~d-k----ma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q-----~rpf 268 (898)
T COG5240 203 NPISQYHALGLLYQSKRTD-K----MA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQ-----LRPF 268 (898)
T ss_pred ChHHHHHHHHHHHHHhccc-H----HH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHH-----HHHH
Confidence 4567899999999984432 2 11 122344443321 111222233444443333333222 3477
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhcccc
Q 005088 338 LIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 416 (715)
Q Consensus 338 L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~ 416 (715)
|-.|+++.-..|...++.+++.++... ...+++ ..+..|-.+|.+.....|..|.++|..|+...+.....+... ++
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e-vE 346 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE-VE 346 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh-HH
Confidence 788888888889999999999988776 333332 245566677788888999999999999986543332222221 11
Q ss_pred ccccchhhhhhhh-hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHH
Q 005088 417 KLQDGEFIVQATK-DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 495 (715)
Q Consensus 417 ~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~l 495 (715)
.|+... .+... +.+...+..-....-...+..+..++++-+.+.+.-+..++..|+...+.... ..+..|...
T Consensus 347 sLIsd~--Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~----s~l~FL~~~ 420 (898)
T COG5240 347 SLISDE--NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL----SYLDFLGSS 420 (898)
T ss_pred HHhhcc--cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH----HHHHHHHHH
Confidence 221100 00000 11111111111111223444555556665666666666666666555443322 223444433
Q ss_pred hc-CCCcchhhhhHHHHHHhhhh
Q 005088 496 LG-STNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 496 l~-~~~~~~~~~aa~~L~~L~~~ 517 (715)
|. .+.-+.+.++..++..+.+.
T Consensus 421 L~~eGg~eFK~~~Vdaisd~~~~ 443 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDAMEN 443 (898)
T ss_pred HHhcccchHHHHHHHHHHHHHhh
Confidence 33 35556666666666666654
No 140
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.55 E-value=0.00014 Score=66.83 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=67.8
Q ss_pred HhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCC--CceecCCCCHHHHHHHHHHHhcCCcc---cCH
Q 005088 541 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDA--RDIEIPNIRWEVFELMMRFIYTGSVD---VTL 615 (715)
Q Consensus 541 ~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~--~~i~l~~~~~~~~~~~l~~~Y~~~~~---~~~ 615 (715)
.+.-..+.|+-+......|++||.+|++|||+|+.+.+++...... ..+..-+++.++|+.+|+|+|+|..- ...
T Consensus 124 ~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~f 203 (401)
T KOG2838|consen 124 GYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGF 203 (401)
T ss_pred hhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCC
Confidence 3444466788888888999999999999999999998875433222 24666789999999999999999764 333
Q ss_pred HHHHHHHHHHHHhChh
Q 005088 616 DIAQDLLRAADQYLLE 631 (715)
Q Consensus 616 ~~~~~ll~~A~~~~~~ 631 (715)
.+..-+-.++.-|+.+
T Consensus 204 qn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 204 QNSDILEQLCEDFGCF 219 (401)
T ss_pred chHHHHHHHHHhhCCc
Confidence 4455555666666654
No 141
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.54 E-value=0.00023 Score=56.73 Aligned_cols=86 Identities=35% Similarity=0.506 Sum_probs=70.2
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHH
Q 005088 251 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (715)
Q Consensus 251 l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (715)
++.|++.+ +++++.++..++.+|+++- .+ ..++.|..++.++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 7889999999999999762 11 24888999999999999999999999873
Q ss_pred hhcCChHHHHHHhCC-CCHHHHHHHHHHHH
Q 005088 330 VQRGAVRPLIEMLQS-PDVQLREMSAFALG 358 (715)
Q Consensus 330 ~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~ 358 (715)
....++.|.+++.+ ++..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23468999999977 45667999988875
No 142
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.44 E-value=0.00084 Score=51.10 Aligned_cols=74 Identities=26% Similarity=0.415 Sum_probs=60.5
Q ss_pred cCeeecchHHHHhhccHHHHHhhcCCC--CCCCCCceecCCCCHHHHHHHHHHH-----hcCC------cccCHHHHHHH
Q 005088 555 EGRRFYAHRICLLASSDAFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL 621 (715)
Q Consensus 555 ~~~~~~~h~~iL~~~s~~f~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~-----Y~~~------~~~~~~~~~~l 621 (715)
+|.+|-..|.+- .-|+-.++|++++. .|...+++.+++++.+.++.+.+|+ |++. .+++++.+.+|
T Consensus 25 Ddhefiikre~A-mtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL 103 (112)
T KOG3473|consen 25 DDHEFIIKREHA-MTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL 103 (112)
T ss_pred CCcEEEEeehhh-hhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence 467787777654 48999999999874 5566778999999999999999998 3443 34789999999
Q ss_pred HHHHHHhC
Q 005088 622 LRAADQYL 629 (715)
Q Consensus 622 l~~A~~~~ 629 (715)
+.+|+++.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999875
No 143
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.04 Score=61.48 Aligned_cols=259 Identities=20% Similarity=0.204 Sum_probs=146.2
Q ss_pred CChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 104 g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
+++..|+..|++.+. .|+-.|++-++.++ ..|.. ....++..+++++...+++ ..-
T Consensus 341 ~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~-------~aW 397 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDD-------SAW 397 (1133)
T ss_pred HHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCch-------hHH
Confidence 467777788888777 89999999999999 55522 1223466666666554432 444
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc--------cCCHHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHH
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--------FTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPT 253 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--------~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~l~~ 253 (715)
-.+|-+|..++...--.-..+ ..++|.++.-|. +....+|.+||.+++.++....... .-+...=.-..
T Consensus 398 HgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L 475 (1133)
T KOG1943|consen 398 HGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL 475 (1133)
T ss_pred HHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence 588889999885322111111 134455554443 1235789999999999997543321 11111111123
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcC
Q 005088 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (715)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (715)
|...+-+.+-..|+.|..++-.......+. .-+++. +...+.-.-..+.++...+..-....+..+..++
T Consensus 476 L~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f--- 545 (1133)
T KOG1943|consen 476 LIVALFDREVNCRRAASAALQENVGRQGNF------PHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF--- 545 (1133)
T ss_pred HHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH---
Confidence 334455667788998888887765432211 012221 1111111112222222333322222222222222
Q ss_pred ChHHHHHH-hCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEM-LQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
..|+.. +.+.+..+|+.++++|.+|+....+ ....+.++.++....+.+...+.-+..+.+.+.
T Consensus 546 --~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 546 --NHLLTKKVCHWDVKIRELAAYALHKLSLTEPK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred --HHHHhcccccccHHHHHHHHHHHHHHHHhhHH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 222222 4567999999999999998766533 334567788888888888877776666666554
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.021 Score=53.35 Aligned_cols=225 Identities=20% Similarity=0.228 Sum_probs=140.0
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
+..+.+...+++..+....+.+|..... ...++.|+..+.+. .+-||-.|..+|+.+. . +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~----- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P----- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h-----
Confidence 4455555555555555666777776663 35788888888764 5678888999998884 2 2
Q ss_pred HHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchh----HHH--------hhcCChHHHHHHhCC-CCHH-HHHH
Q 005088 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHI--------VQRGAVRPLIEMLQS-PDVQ-LREM 352 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~--------~~~~~l~~L~~~L~~-~~~~-v~~~ 352 (715)
..++.+-++.+++...++..+..++..+-..+.-.. ... ...+-+..+-..|.+ +.+. -|..
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 245666677766667777766667766643211110 000 011123333333322 2222 3345
Q ss_pred HHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHH
Q 005088 353 SAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV 432 (715)
Q Consensus 353 a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~ 432 (715)
|...|.|+.. ...+..|++-+...+.-.|..++.+++.|-..
T Consensus 176 amF~LRn~g~--------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~------------------------------ 217 (289)
T KOG0567|consen 176 AMFYLRNIGT--------EEAINALIDGLADDSALFRHEVAFVFGQLQSP------------------------------ 217 (289)
T ss_pred hhhHhhccCc--------HHHHHHHHHhcccchHHHHHHHHHHHhhccch------------------------------
Confidence 5555555432 22355566666667788888888888887321
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhh--hhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHH
Q 005088 433 AKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 510 (715)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~ 510 (715)
..++.|.+.|.+. ++-||..|+.||+.++ ....++.|.+.+.++.+-+++.|..+
T Consensus 218 -------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~vv~esc~va 274 (289)
T KOG0567|consen 218 -------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEERVVRESCEVA 274 (289)
T ss_pred -------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1345555656554 7889999999999986 44778899999999999999888887
Q ss_pred HHHhhh
Q 005088 511 LFKLAN 516 (715)
Q Consensus 511 L~~L~~ 516 (715)
|--+..
T Consensus 275 ldm~ey 280 (289)
T KOG0567|consen 275 LDMLEY 280 (289)
T ss_pred HHHHHH
Confidence 754443
No 145
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.13 Score=56.71 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=114.7
Q ss_pred hHHHHHHHHH-HHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHH
Q 005088 76 DRAAAKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (715)
Q Consensus 76 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (715)
+...+..|+. .++.++.+.+.-. ..+.+++.+...+. +++...---|-+.+ ..|+.. +
T Consensus 32 n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~trd~------------ElKrL~ylYl~~yak~~P~~~--l 91 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVATRDV------------ELKRLLYLYLERYAKLKPELA--L 91 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHhcCH------------HHHHHHHHHHHHHhccCHHHH--H
Confidence 3445666666 4555555443222 24555666665555 88888888888888 666332 1
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (715)
. ++..+.+=+.++++ .++..|+++++.+= .++. ....++++.+++.++++.||+.|+-++..
T Consensus 92 L---avNti~kDl~d~N~--------~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~k 153 (757)
T COG5096 92 L---AVNTIQKDLQDPNE--------EIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAK 153 (757)
T ss_pred H---HHHHHHhhccCCCH--------HHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 2 35666666666665 89999999888773 2222 22456889999999999999999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 234 L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
+-+- ......+.|.+..+..++.+.++.+...|+.+|..+.
T Consensus 154 ly~l---d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 154 LYRL---DKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHhc---CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 9853 3445667788899999999999999999999999983
No 146
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.13 Score=57.24 Aligned_cols=288 Identities=14% Similarity=0.108 Sum_probs=157.0
Q ss_pred HHHHHHHHhhcccc--chHHhHHHHHHHHHHHHHHhc---ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHH
Q 005088 58 EVSAQVNVLNTTFS--WLEADRAAAKRATHVLAELAK---NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (715)
Q Consensus 58 ~v~~lv~~L~~~l~--~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (715)
.++-+++.|.+.-. ....++.....|+..++++++ .+..-+...+.=.++.+.+.++++.. -+
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g------------~L 478 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG------------YL 478 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh------------HH
Confidence 34444444543222 334456667788888888876 12222223333456677777788777 89
Q ss_pred HhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh--cCCc
Q 005088 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGI 209 (715)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~g~i 209 (715)
|.+|+|.++.++ .+-.... .-..++....+.|..++.- .++-.|+.+|..+..+.+.....+.. .+.+
T Consensus 479 rarac~vl~~~~~~df~d~~--~l~~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 479 RARACWVLSQFSSIDFKDPN--NLSEALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred HHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 999999999999 2211111 1223466667777643332 78888999999998766655443321 2344
Q ss_pred HHHHHhhccCCHHHHHHHHH-HHHHHhcCChhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhhc----
Q 005088 210 PPLVELLEFTDTKVQRAAAG-ALRTLAFKNDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH---- 278 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~-~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~---- 278 (715)
+.|+.+.+.-+.+....++. .++..+..-......+. ......+.+++.. .+++=...|.++|..+..
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s 628 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLS 628 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 55555655433333333332 22233321111111111 1234445555552 123334445555554421
Q ss_pred --CChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHH
Q 005088 279 --SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356 (715)
Q Consensus 279 --~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~ 356 (715)
..++..+. ++.-.++++-.+|.+.-.++-++++..+.++....++.-..+ =++++.+.+.+.......-....-+
T Consensus 629 ~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~ 705 (1010)
T KOG1991|consen 629 LENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPA 705 (1010)
T ss_pred HhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22222111 233456777777777777888888888887765443332222 2456667777776666667777778
Q ss_pred HHHhHHHHHHHHHh
Q 005088 357 LGRLAQVITAGIAH 370 (715)
Q Consensus 357 L~~l~~~~~~~l~~ 370 (715)
|.|....+...+.+
T Consensus 706 l~N~vt~g~~~~~s 719 (1010)
T KOG1991|consen 706 LHNYVTYGTPSLLS 719 (1010)
T ss_pred HhhheeeCchhhhc
Confidence 88887776333333
No 147
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.23 E-value=0.00041 Score=49.35 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005088 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l 360 (715)
+.+|..|+++|++++...+..... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999987655554444 4467889999999999999999999999875
No 148
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.23 E-value=0.00031 Score=56.63 Aligned_cols=87 Identities=25% Similarity=0.380 Sum_probs=64.7
Q ss_pred EEEEecCeeecchHHHHh-hccHHHHHhhcCC---CCCCCCCceecCCCCHHHHHHHHHHHhc-CCcccC-HHHHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR 623 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~-~~~~~~ll~ 623 (715)
|.+-|+|+.|.+-+..|. ....+|..|+.++ ........+-+ |-+|+.|+.+|+|+.+ +.+..+ ......+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578899999999999998 4456899999864 22334455655 6799999999999999 666653 567789999
Q ss_pred HHHHhChhhH-HHHH
Q 005088 624 AADQYLLEGL-KRLC 637 (715)
Q Consensus 624 ~A~~~~~~~L-~~~~ 637 (715)
-|++|+++.| .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 5554
No 149
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.21 E-value=0.052 Score=54.58 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=147.6
Q ss_pred HHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhH-----HHHHh--CCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005088 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-----NQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGN 275 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-----~~~~~--~g~l~~L~~ll~~~~~~v~~~a~~~L~~ 275 (715)
+...+.+..|+..|..-+.+.+..+..+..++.......+ ..+.. ..++..|+... +++++...+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence 4456788899999988889999999999999987543332 12222 22333343333 356677777777777
Q ss_pred hhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhc---CChHHHHHHhCCCCHHHHHH
Q 005088 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREM 352 (715)
Q Consensus 276 L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~~L~~~~~~v~~~ 352 (715)
.+. .+...+.++....+..+.+.+..++-++...|..++..+-............. .++...-.+|.+++.-+++.
T Consensus 150 c~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 754 46777888888889999999999999999999999998766555544444443 45567778889999999999
Q ss_pred HHHHHHHhHHHH------HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHH
Q 005088 353 SAFALGRLAQVI------TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 409 (715)
Q Consensus 353 a~~~L~~l~~~~------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 409 (715)
++..|+.+.... .+++.+..-+..++.+|++++..+|..|..+..-...+|...+.+
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 999999998766 566677788999999999999999999999999887776544443
No 150
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.21 E-value=0.0024 Score=50.97 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
.+...+.+|+||+..++.++..+.+.|+++.++.... +.+|-++++|+++|.||+.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567789999999999999999999999999998754 358999999999999999999998766654
No 151
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.20 E-value=0.039 Score=50.95 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcC
Q 005088 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~ 157 (715)
...|+..|.-++++|+.+..+.++.+--.|-.+|...+.+. ++ .-+|..++.+++.+. ++.+....+...+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r------~f-EyLRLtsLGVIgaLvk~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSR------PF-EYLRLTSLGVIGALVKNDDQEVIRFLLTTE 168 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCC------ch-HHHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 56677778888889999999999988778888887665521 22 278999999999999 6777888888999
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccch------hHHHhc-CCcH-HHHHhhccCCHHHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK------TRVRME-GGIP-PLVELLEFTDTKVQRAAAG 229 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~------~~~~~~-g~i~-~L~~ll~~~~~~v~~~a~~ 229 (715)
++|..++.+...+. ..+..|..++..+..++.... +.|..- ..+. .+..+.+.+++.+.+.+++
T Consensus 169 IVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviR 240 (293)
T KOG3036|consen 169 IVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIR 240 (293)
T ss_pred hHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999998875 666677777777765443221 111111 1222 3344556788999999999
Q ss_pred HHHHHhcCChhhHHHHHhC---CChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 230 ALRTLAFKNDENKNQIVEC---NALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~---g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
+..+|+ +++..+..+... +.-..-...+-.+|++.+.+....+.|++
T Consensus 241 cYlrLs-dnprar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 241 CYLRLS-DNPRARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHhc-CCHHHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 999999 477776665432 11111222233346666666666666664
No 152
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00031 Score=70.77 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=109.9
Q ss_pred CeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHH---HHHHHHHHhChhh
Q 005088 556 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG 632 (715)
Q Consensus 556 ~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~---~ll~~A~~~~~~~ 632 (715)
++.+..|+.+++++++.|+.|+..+..+.....+.+.+..+..++.+..|.|+..-....+... .++..+.+|+.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5679999999999999999999987665555566888999999999999999976655555554 7888999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHH--HHHHhhCCchh
Q 005088 633 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH 686 (715)
Q Consensus 633 L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f 686 (715)
|+..|...+...++..++...+..+..++...+...|..++.. +++-+....++
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 9999999999999898988999999999988899989888886 65555544433
No 153
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.15 E-value=0.001 Score=54.86 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHH
Q 005088 650 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 698 (715)
Q Consensus 650 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 698 (715)
|+.++.+|..|+...|.+.|.+|+..||.++..+++|.+++.+.+..++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL 49 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEIL 49 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHH
Confidence 7899999999999999999999999999999999999999665544443
No 154
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.15 E-value=0.00053 Score=48.76 Aligned_cols=53 Identities=34% Similarity=0.370 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 347 VQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
|.+|..|+++|++++... ...-....+++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999987665 22335567889999999999999999999999985
No 155
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.039 Score=60.57 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=127.4
Q ss_pred hccCCHHHHHHHH-HHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 216 LEFTDTKVQRAAA-GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 216 l~~~~~~v~~~a~-~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
+.+.+...+..|+ .+|..++.+++- .-..+.+++...+.|.++++-+---|.+.+...|+.+.. .++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm-------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM-------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence 5555555444444 567777766541 123555666666789999998888888888777753222 466
Q ss_pred HHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCh
Q 005088 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGL 374 (715)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l 374 (715)
.+.+=++++++.+|..|+++++.+- .++ +. ..+++++.+++.++++.||+.|+.++.++-..+.....+.|.+
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--~~e----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--VKE----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--hHH----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 7778888999999999988888762 122 11 2357899999999999999999999999987777788888899
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhccCC
Q 005088 375 VPLLKLLDSKNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 375 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 402 (715)
..+..++.+.+|.|..+|..+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999999999999999998644
No 156
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.41 Score=53.89 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-h-hhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchH
Q 005088 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (715)
Q Consensus 54 ~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (715)
+....++.+++.|.+.++.. |..++-.|+..++.++.. | +.... ++...+.++.-.+.+ .
T Consensus 334 dv~eivE~vie~Lls~l~d~--dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~-----------~ 395 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDT--DTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDD-----------S 395 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCC--cchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCch-----------h
Confidence 35556666666776666654 666788899999999883 4 22222 344555544433332 3
Q ss_pred HHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
.-..++-+|+.++ .+--.-..+ ..++|.++.-|.-............++..||.+++.++.......- .+.+.
T Consensus 396 aWHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l----~p~l~ 469 (1133)
T KOG1943|consen 396 AWHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL----KPVLQ 469 (1133)
T ss_pred HHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh----hHHHH
Confidence 3337888898888 332111111 1346666666644322111111238899999999998864443211 12233
Q ss_pred HHHH-----hhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 211 PLVE-----LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 211 ~L~~-----ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
.|.. .+-+++..+|++|..++..... ...+. ..+++.+ .....-.-..+.++...|..-....+..+.
T Consensus 470 ~L~s~LL~~AlFDrevncRRAAsAAlqE~VG-R~~n~-----p~Gi~Li-s~~dy~sV~~rsNcy~~l~~~ia~~~~y~~ 542 (1133)
T KOG1943|consen 470 SLASALLIVALFDREVNCRRAASAALQENVG-RQGNF-----PHGISLI-STIDYFSVTNRSNCYLDLCVSIAEFSGYRE 542 (1133)
T ss_pred HHHHHHHHHHhcCchhhHhHHHHHHHHHHhc-cCCCC-----CCchhhh-hhcchhhhhhhhhHHHHHhHHHHhhhhHHH
Confidence 2322 2335677888988888876663 11110 1122221 111111223344444444433333344333
Q ss_pred HHHHcCChHHHHh-hhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 286 EVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 286 ~~~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
.++ +.++. -+.+-+..++..++++|.+++-..++ ......++.+++...+.+...+.-+..+.+.++...
T Consensus 543 ~~f-----~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 543 PVF-----NHLLTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHH-----HHHHhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 332 22222 25566789999999999998754333 344577899999888889888887777777666555
No 157
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.07 E-value=0.21 Score=46.27 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=108.2
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i 209 (715)
.=...|+..|.-++.+|+.+..+....+--.+-.+|...... ++..-++-.++++++.+...+ .+.-..+...+++
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~---r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKS---RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccC---CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 334456666777779999999999988777777888765543 233488889999999999544 4556667788999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--------CCCh-HHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--------CNAL-PTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~l-~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 280 (715)
|..++.+..+++.-+..|..++..+..++... ..+.. ...+ ..+..+.+.++..+.+.++++..+|+. +
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL-~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-n 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGL-YYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-N 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccH-HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-C
Confidence 99999999999888888888888877543322 11110 1112 334455666899999999999999954 4
Q ss_pred hhHHHHH
Q 005088 281 PNIKKEV 287 (715)
Q Consensus 281 ~~~~~~~ 287 (715)
+..+..+
T Consensus 249 prar~aL 255 (293)
T KOG3036|consen 249 PRARAAL 255 (293)
T ss_pred HHHHHHH
Confidence 5554444
No 158
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.98 E-value=0.0015 Score=43.00 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=34.3
Q ss_pred hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc
Q 005088 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (715)
Q Consensus 94 ~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (715)
++.+..+++.|+++.|++++++.+. +++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~------------~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDE------------EVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHc
Confidence 3467788899999999999997666 99999999999986
No 159
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.97 E-value=0.34 Score=51.27 Aligned_cols=337 Identities=16% Similarity=0.109 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhh-----HH
Q 005088 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH-----QQ 151 (715)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~-----~~ 151 (715)
......+.+|+.++.++...+.+.- ..+..+-..++.... .+....++.++.++. ...+. ..
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-----------~~~~~~il~tl~~~~~~~~~~~~~~~~~ 84 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-----------SDYCHAILSTLQSLLEKKQEDKQFEDNS 84 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHHhcccccccchHH
Confidence 4567889999999988776555443 344444444433222 266667777887776 22111 12
Q ss_pred HHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc----------c---
Q 005088 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------F--- 218 (715)
Q Consensus 152 ~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~----------~--- 218 (715)
...+...++.+.+..-........ ....+...+..++..+...-+..++.-. +..+..+.- .
T Consensus 85 ~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 85 WYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred HHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccc
Confidence 223344778887777554332211 1236666666676666654443333222 223333221 0
Q ss_pred ---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 219 ---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 219 ---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
.......-...++..+-.+.... .....+..++.+..+ .++..+..++.+++-+...-+... .-..++.
T Consensus 160 ~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~ 232 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLD 232 (415)
T ss_pred cccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHH
Confidence 11122222334444443221111 111256666766554 468888999999988875421110 0112233
Q ss_pred HHHhhh-ccCC----hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-----
Q 005088 295 PVIGLL-SSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----- 364 (715)
Q Consensus 295 ~L~~ll-~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----- 364 (715)
.+...+ .... .....-..|+...+...+.... ...+..|+.++.+ +.+...++.++.-+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~ 305 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLN 305 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcC
Confidence 333333 2222 2333334455555443222211 2235677777765 777888888888887772
Q ss_pred ------HHHHHhc----CChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHH
Q 005088 365 ------TAGIAHN----GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 434 (715)
Q Consensus 365 ------~~~l~~~----~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~ 434 (715)
-+.++.. ..+|.|++..+..+...+.+-..+|.++..+-+..-..-+
T Consensus 306 ~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~----------------------- 362 (415)
T PF12460_consen 306 KENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE----------------------- 362 (415)
T ss_pred ccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-----------------------
Confidence 1222222 3456666666666666888888888888765432211111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 005088 435 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 477 (715)
Q Consensus 435 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 477 (715)
-..++|.|++-|..++++++..++.+|..+....
T Consensus 363 ---------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 363 ---------LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred ---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 1236788888888899999999999999997665
No 160
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.94 E-value=0.0023 Score=42.08 Aligned_cols=38 Identities=37% Similarity=0.584 Sum_probs=35.1
Q ss_pred hhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 240 ~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
.++..+.+.|+++.|+.++.+++++++..++++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999995
No 161
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.085 Score=56.59 Aligned_cols=300 Identities=18% Similarity=0.171 Sum_probs=165.8
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
-+|-..++.|..|= .++. -...+|.+...|.+.+. -++++|.-++..+-...+. .-..+-.
T Consensus 114 yiRG~TLRFLckLk-E~EL-----lepl~p~IracleHrhs--------YVRrNAilaifsIyk~~~~-----L~pDape 174 (948)
T KOG1058|consen 114 YIRGSTLRFLCKLK-EPEL-----LEPLMPSIRACLEHRHS--------YVRRNAILAIFSIYKNFEH-----LIPDAPE 174 (948)
T ss_pred hhcchhhhhhhhcC-cHHH-----hhhhHHHHHHHHhCcch--------hhhhhhheeehhHHhhhhh-----hcCChHH
Confidence 66666666666553 3333 23467888888888776 8899999888887642111 1123333
Q ss_pred HHHHhh-ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---cCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 211 PLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 211 ~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll---~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
.+-.+| ...++...++|...|...- ++.. +..|.... .+-++..+...+..+...+..++..+
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D---~ErA--------l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-- 241 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTD---PERA--------LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-- 241 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcC---HHHH--------HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh--
Confidence 444444 4567777777766555432 3321 22222222 22356677777777877776666543
Q ss_pred HHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHHH
Q 005088 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVIT 365 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~ 365 (715)
...+..+..+|.+.++.++.+|+.+|-+++. ++...+.. ...+++++.. ++..++.-...-|..+.....
T Consensus 242 ---~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~ 312 (948)
T KOG1058|consen 242 ---ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHE 312 (948)
T ss_pred ---hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhH
Confidence 3357788889988888999999998888853 44333222 2455555532 444444333333333332211
Q ss_pred HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCc--hhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHH-
Q 005088 366 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK- 442 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~- 442 (715)
. + -.|.+-.+++.|.+++-+++..++.....|+.+.+ ....+........--.........+..+...+......
T Consensus 313 ~-i-l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 313 K-I-LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred H-H-HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence 1 1 12455567788899999999999999999865432 22223332221111000000011111222222222211
Q ss_pred --HhhhhHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 005088 443 --IHGRVLNHLLYLMRVAEKGVQRRVALALAHL 473 (715)
Q Consensus 443 --~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 473 (715)
....+++.|++.+.+.++......+..+...
T Consensus 391 p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~ 423 (948)
T KOG1058|consen 391 PEVAATVVSLLLDFISDSNEAAASDVLMFVREA 423 (948)
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 2556888899999888876544444444443
No 162
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.87 E-value=0.006 Score=50.06 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=56.1
Q ss_pred ecCeeecchHHHHhhccHHHHHhhcCCCCCC-CCCceecCCCCHHHHHHHHHHHhcCCcc-------------------c
Q 005088 554 VEGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFIYTGSVD-------------------V 613 (715)
Q Consensus 554 ~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-------------------~ 613 (715)
.+|..|.+.+.+.. .|..++.|+.+...+. ....|++++++..+++.+++|++...-. +
T Consensus 9 ~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~ 87 (104)
T smart00512 9 SDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKI 87 (104)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcC
Confidence 46889999999875 9999999997532221 2258999999999999999999643211 3
Q ss_pred CHHHHHHHHHHHHHhCh
Q 005088 614 TLDIAQDLLRAADQYLL 630 (715)
Q Consensus 614 ~~~~~~~ll~~A~~~~~ 630 (715)
+.+.+.+|+.||+++++
T Consensus 88 d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 88 DQETLFELILAANYLDI 104 (104)
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 44567777777777754
No 163
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.82 E-value=0.0022 Score=62.04 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=73.7
Q ss_pred eeecchHHHHhhccHHHHHhhcCCCCCC-CCCceecC-CCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhChhhHH
Q 005088 557 RRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 634 (715)
Q Consensus 557 ~~~~~h~~iL~~~s~~f~~~~~~~~~e~-~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~L~ 634 (715)
+.|.+.+.+|...=.||+..+....+++ ....|++. +.+-.+|+-+++|++.....+++.++..++--++|++|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 7899999999999999999996522121 12245553 578899999999999988889999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 005088 635 RLCEYTIAQDI 645 (715)
Q Consensus 635 ~~~~~~l~~~i 645 (715)
+.|..|+..++
T Consensus 94 e~cl~y~~~~~ 104 (317)
T PF11822_consen 94 EECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHhH
Confidence 99998886543
No 164
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.2 Score=54.27 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=51.0
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
.+.+-.++.+....+...|+.++.++...++. .+. ..+..|-.++.++...+|..|.++|..++...|.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 34555666677788888999999888743221 221 2677788888889999999999999999876554
No 165
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.80 E-value=0.15 Score=51.29 Aligned_cols=202 Identities=13% Similarity=0.153 Sum_probs=139.3
Q ss_pred HHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhh-----HHHHHhcCChHHHHHHHccccCC
Q 005088 99 WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH-----QQLIVDNGALSHLVNLLKRHMDS 172 (715)
Q Consensus 99 ~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~-----~~~i~~~~~l~~L~~lL~~~~~~ 172 (715)
.+.+.|.+..|+..|..-+- +.+..+..+.+++. ..... .+.+... .-..+..++.....+
T Consensus 71 Ei~~~dll~~Li~~L~~L~f------------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~ 137 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDF------------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENP 137 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-H------------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGST
T ss_pred HHHHhCHHHHHHHHhhhCCC------------cccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCc
Confidence 35567889999998877666 89999999999988 33222 2233322 123333344443332
Q ss_pred CcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhC---C
Q 005088 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---N 249 (715)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---g 249 (715)
++.-.+-..|+..+. .+.....+.....+..+...+..++-++...|..++..+-..+.......... .
T Consensus 138 -------dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ 209 (335)
T PF08569_consen 138 -------DIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDR 209 (335)
T ss_dssp -------TTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHH
T ss_pred -------cccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 566666666776665 66666667777888889999999999999999999998776555554444442 3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH---HHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcC
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 321 (715)
+......++.+++--++..++..|+.+....... ...+.+..-+..++.+|++.+..++.+|.-++.-..++
T Consensus 210 ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 210 FFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 5667788999999999999999999997653332 23333456789999999999999999999888887764
No 166
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.011 Score=63.77 Aligned_cols=243 Identities=18% Similarity=0.125 Sum_probs=162.3
Q ss_pred ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH-hhcCChhhHHHHHhcCChHHHHHHHccccC
Q 005088 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMD 171 (715)
Q Consensus 93 ~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 171 (715)
...-+...++.|+...|+.+...... .-+.....+|. .+. -+..+ ....++.+.+.+.....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~-f~~~~----~~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKID-FPGER----SYEVVKPLDSALHNDEK 555 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcC-CCCCc----hhhhhhhhcchhhhhHH
Confidence 34555667889999999999988777 77777777777 333 11111 11234555555444321
Q ss_pred CCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCC
Q 005088 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA 250 (715)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~ 250 (715)
. --.-.++.++.||+..++..++.+...-+++.+-.++-..++..+..++..+.||..+..-....+.+ ...
T Consensus 556 ~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~ 628 (748)
T KOG4151|consen 556 G-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDR 628 (748)
T ss_pred H-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccC
Confidence 0 11124677899999888888888888878888777888889999999999999999865445555665 345
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH-HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHH
Q 005088 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (715)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (715)
++.....+...+......+++++..++......+. ..........+..++.+.+.+++...+....|+.....+....+
T Consensus 629 l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~ 708 (748)
T KOG4151|consen 629 LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKI 708 (748)
T ss_pred chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 66666666666777788888888877665555555 33335677888899999999999999988888765444444445
Q ss_pred hhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005088 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (715)
Q Consensus 330 ~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~ 359 (715)
.....++.+..+-.-.....++.+..+|..
T Consensus 709 ~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 709 FETEVMELLSGLQKLNRAPKREDAAPCLSA 738 (748)
T ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 555555544444333444455555555543
No 167
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.21 Score=53.68 Aligned_cols=159 Identities=21% Similarity=0.177 Sum_probs=106.1
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
++=+.+-+++.+.++-+|.....++..--.+.. ..+++..|++. ..+.+++|++.|+-+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 444566678888888888877766552221111 23566777776 56679999999999999998887764
Q ss_pred HHHHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
++..+.+|. +.++.||..++.+|+-.|++.... . .+..|-.+..++..-||+.|+-+++.+....
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-E------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-H------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 455666665 557999999999999888765432 1 2344555556677889999999988776554
Q ss_pred --HHHHHhcCChHHHHHhhccCChhH
Q 005088 365 --TAGIAHNGGLVPLLKLLDSKNGSL 388 (715)
Q Consensus 365 --~~~l~~~~~l~~L~~ll~~~~~~v 388 (715)
...---.++.+.+.+.+.+++...
T Consensus 656 t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 656 TEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred ccccCchHHHHHHHHHHHhhhhhhHH
Confidence 111111234456666775555433
No 168
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.079 Score=57.52 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=148.4
Q ss_pred CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHH-HHhccCccchhHHHhcCCcHHHHHhhccCCH-H
Q 005088 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT-NLAHENSSIKTRVRMEGGIPPLVELLEFTDT-K 222 (715)
Q Consensus 145 ~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~ 222 (715)
....-+...+..|+...|+.+...... .-+.....+|. .+...... ....++.+...+..... .
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHH
Confidence 455666677788899999998877664 44444444554 22221111 12344555554433221 1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHhhhc
Q 005088 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 301 (715)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~ 301 (715)
-...++.++.||+..+...+..+.....++.+-.++..+++..+..++..+.||..++.-....+.+ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 2356888999999877777877888777777888888899999999999999998776555555555 456777777776
Q ss_pred cCChHHHHHHHHHHHHHhcCCcchhH-HHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHH
Q 005088 302 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPL 377 (715)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L 377 (715)
.........++.++..+++....... ..........+..++.+.++.++...+..+.|+.... ...+.+....+.+
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l 717 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELL 717 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHH
Confidence 66677777777777767665555554 3333466788888999999999999999999965544 3444444444444
Q ss_pred H
Q 005088 378 L 378 (715)
Q Consensus 378 ~ 378 (715)
.
T Consensus 718 ~ 718 (748)
T KOG4151|consen 718 S 718 (748)
T ss_pred H
Confidence 3
No 169
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.71 E-value=0.075 Score=50.24 Aligned_cols=205 Identities=13% Similarity=0.146 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHHh-cCChHHHHhhhcCCCCcccccCCCccch---HHHhhHHHHHHhhcCChhhH
Q 005088 76 DRAAAKRATHVLAELAKN-EEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEH---EVEKGSAFALGLLAVKPEHQ 150 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~-~g~v~~L~~lL~~~~~~~~~~~~~~~~~---~v~~~a~~~L~~l~~~~~~~ 150 (715)
+++.+..|+..|..--.. ++..-.+.. .|.+..|++=+-+.-+.. .|..... .-...|+..|.-++.+|+.|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l---~~~~Lt~~~snRVcnaLaLlQ~vAshpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPAL---SPPNLTARQSNRVCNALALLQCVASHPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGT---TTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccC---CCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence 344577777777765553 555555554 577776653332211100 1111122 33445666666677999999
Q ss_pred HHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc-cCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHH
Q 005088 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (715)
Q Consensus 151 ~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 229 (715)
..+.+.++.-.|..+|+..+. .++...++-.++++++.+.. ++++.-..+...+.+|..++.++.+++-.+..|..
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k---~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtf 161 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSK---TRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATF 161 (262)
T ss_dssp HHHHHTTGGGGGHHHHH-------SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhcccc---ccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHH
Confidence 999999988888899976554 33445888999999999995 34566677788899999999999988877888888
Q ss_pred HHHHHhcCChhhHHHHHh--------CCChHH-HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 230 ALRTLAFKNDENKNQIVE--------CNALPT-LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~--------~g~l~~-L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
++..+..+ +..-..+.. ..++.. +..+..++++.+.+..+++-..|+.+ +..+..+.
T Consensus 162 IlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~ 227 (262)
T PF04078_consen 162 ILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALR 227 (262)
T ss_dssp HHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHH
T ss_pred HHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHH
Confidence 88877753 333222211 112222 23345667899999999999999654 55545443
No 170
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.46 Score=52.11 Aligned_cols=344 Identities=14% Similarity=0.173 Sum_probs=179.6
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHH------H
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV------R 204 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~------~ 204 (715)
-+...+++.|..|+.+......++..+++..|+.+-.-+ +.......||+.+.. .....+.+ +
T Consensus 368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s----------~~~~g~s~cly~~~~-~q~~mervc~~p~~v 436 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS----------ETFYGLSSCLYTIGS-LQGIMERVCALPLVV 436 (1516)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch----------hhhhhHHHHHHHHhh-hhhHHHHHhhccHHH
Confidence 455567888888887777888888888888777654432 333445556666654 22221111 1
Q ss_pred hcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC--------C-----------CHHH
Q 005088 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------E-----------DSAI 265 (715)
Q Consensus 205 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~--------~-----------~~~v 265 (715)
...++..-+.++..+...-+.++...+. .+......-..+-..+.++.|+.++++ . +...
T Consensus 437 ~~~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~ 515 (1516)
T KOG1832|consen 437 IHQVVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQM 515 (1516)
T ss_pred HHHHHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhh
Confidence 2234444455554333222222222111 111111222233445666667666642 0 1122
Q ss_pred HHHHHHHHHHhhc-----CChhHHHHHHHcCChHHHHhhhccC------ChHHHHHHHHHHHHHhcCCc-------chhH
Q 005088 266 HYEAVGVIGNLVH-----SSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDS-------DCKV 327 (715)
Q Consensus 266 ~~~a~~~L~~L~~-----~~~~~~~~~~~~g~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~-------~~~~ 327 (715)
-...|.+|..... ..+..++.-+..|..+..+.-+... +.+...+.++-+..+....+ ....
T Consensus 516 ~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~ae 595 (1516)
T KOG1832|consen 516 AFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAE 595 (1516)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHH
Confidence 3445666654422 2223334444556666665544322 23344455555544443333 1123
Q ss_pred HHhhcCChHHHHHHhCC--------CCHHHHHHHHHHHHHhHHHH--HHHHHhc--------CChHHHHHhhc----cCC
Q 005088 328 HIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQVI--TAGIAHN--------GGLVPLLKLLD----SKN 385 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~~--------~~~~v~~~a~~~L~~l~~~~--~~~l~~~--------~~l~~L~~ll~----~~~ 385 (715)
.+.+.+++..++.+..- +..++...|+.+|+-+..-. +..+... .|+..++..-. -.+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 35566778888877642 23456677877777666544 4444321 24444544432 237
Q ss_pred hhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhhhhhhhhH-HHHHH-HHHHHHHhhhhHHHHHHHHhhhh---
Q 005088 386 GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDC-VAKTL-KRLEEKIHGRVLNHLLYLMRVAE--- 459 (715)
Q Consensus 386 ~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~L~~ll~~~~--- 459 (715)
+++++.|+.+|.|+... ++++...+..-+-+.=..-.+.-...+.. +...+ +-.+.+...+.+..|+++|....
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 89999999999999554 46665544321100000000001111111 11122 22233346678899999998753
Q ss_pred --hhHHHHHHHHHHhhcCCCccchhhhcC
Q 005088 460 --KGVQRRVALALAHLCSPDDQRTIFIDG 486 (715)
Q Consensus 460 --~~v~~~a~~aL~~l~~~~~~~~~~~~~ 486 (715)
..+|..|+++|.-|+..+.-++++.+.
T Consensus 756 ~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 368889999999999999877776554
No 171
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.17 Score=54.81 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=84.3
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHH
Q 005088 250 ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (715)
Q Consensus 250 ~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (715)
.+..|..+|++ +.-+.+...+.++..+...+++.+.. ++..|...+.+.. ...-+...|.-+....|..
T Consensus 392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a--- 461 (865)
T KOG1078|consen 392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA--- 461 (865)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---
Confidence 34556666655 34566777777777776666654333 4666777776643 2333445555443322221
Q ss_pred HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
..-...+..+...+.=.+..+|..|..+|.++.... ......+.-.+.+++.+.+.++|..|...|.++-
T Consensus 462 ~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~--~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD--VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC--CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 111233444444444467888999999999887332 1112234456778889999999999999999986
No 172
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.60 E-value=0.0064 Score=59.12 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=71.1
Q ss_pred chHHHhcCCC--cccEEEEe-cCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCccc
Q 005088 537 LGDQFVNNAT--LSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV 613 (715)
Q Consensus 537 ~~~~~~~~~~--~~d~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~ 613 (715)
+...+.+++. ..|+.+.. +|..|.+|++.|++||.+|..-+..-|. ..++|.-..+-+.+|..+++|+|-..-..
T Consensus 137 i~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~ 214 (516)
T KOG0511|consen 137 IQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAE 214 (516)
T ss_pred HHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhh
Confidence 3344444444 34777766 5888999999999999988655543221 22456556778899999999999874445
Q ss_pred CHHHHHHHHHHHHHhChhhHHHHH
Q 005088 614 TLDIAQDLLRAADQYLLEGLKRLC 637 (715)
Q Consensus 614 ~~~~~~~ll~~A~~~~~~~L~~~~ 637 (715)
-.+...+++.+..+|+.+.|....
T Consensus 215 ~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 215 WKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred hhhHHHHHHhhhhhccHHHhHHHH
Confidence 555668999999999998886644
No 173
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.60 E-value=0.045 Score=47.71 Aligned_cols=133 Identities=13% Similarity=0.205 Sum_probs=102.5
Q ss_pred HHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcch
Q 005088 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (715)
Q Consensus 97 ~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~ 176 (715)
...+++.||++.|+++++++.. +.+...++...++.++..|-+..-..........+..++.++.....+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~------~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d---- 73 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE------IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMD---- 73 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc------cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccccc----
Confidence 3467888999999999998764 112233778889999999885544455566677788888888865421
Q ss_pred hhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q 005088 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241 (715)
Q Consensus 177 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 241 (715)
..+...++..|-++...++.....+...--++.|+..|+.++++++.+++..+..|-...++.
T Consensus 74 --~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 74 --ASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred --chHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 288999999999999877776766666667899999999999999999999888887654443
No 174
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.02 Score=50.28 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=73.8
Q ss_pred ecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcc---------------------
Q 005088 554 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD--------------------- 612 (715)
Q Consensus 554 ~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~--------------------- 612 (715)
.+|+.|.+-..+.. .|..+..++...--......|+++.++...|..+|.|+|..+-+
T Consensus 12 sDG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 12 SDGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred cCCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 46888999887776 78888888753211111147999999999999999999874321
Q ss_pred ----cCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC---ChhhHHHHH
Q 005088 613 ----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMY 654 (715)
Q Consensus 613 ----~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i---~~~~~~~~~ 654 (715)
++..++++++.+|+++.+++|.+.|...+...+ +++....+|
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f 139 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIF 139 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHc
Confidence 234588999999999999999999988776655 454444443
No 175
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.28 Score=52.80 Aligned_cols=214 Identities=14% Similarity=0.195 Sum_probs=139.2
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (715)
.+..+..+|.+.++ .|+.+|+.+|.+++.+|..-+. +...+++++....+. .+...
T Consensus 244 ~i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdn-------nvklI 299 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDN-------NVKLI 299 (948)
T ss_pred HHHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCc-------chhhh
Confidence 35677888888877 8999999999999977765443 235566666655443 44555
Q ss_pred HHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhc----
Q 005088 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLR---- 259 (715)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~-ll~---- 259 (715)
.+.-|..+...+.. .+ .|.+--++++|.+++-+++..++....-|+.. .+...+ +..|-+ +.+
T Consensus 300 vldrl~~l~~~~~~---il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvedi-----v~~Lkke~~kT~~~ 367 (948)
T KOG1058|consen 300 VLDRLSELKALHEK---IL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDI-----VQFLKKEVMKTHNE 367 (948)
T ss_pred hHHHHHHHhhhhHH---HH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHH-----HHHHHHHHHhcccc
Confidence 55555555422221 11 35666788889999999999999988888853 221111 111111 111
Q ss_pred --CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHH
Q 005088 260 --SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (715)
Q Consensus 260 --~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 337 (715)
+.+...|...+.++...+..-++.... +++.+++.+.+.++......+..+.......++.+.. ++..
T Consensus 368 e~d~~~~yRqlLiktih~cav~Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~ 437 (948)
T KOG1058|consen 368 ESDDNGKYRQLLIKTIHACAVKFPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS-----IIEK 437 (948)
T ss_pred ccccchHHHHHHHHHHHHHhhcChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH-----HHHH
Confidence 124467888899999988777765444 5789999999888766666666666555444444433 3455
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHhHHHH
Q 005088 338 LIEMLQS-PDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 338 L~~~L~~-~~~~v~~~a~~~L~~l~~~~ 364 (715)
|+..+.. ....+-+.|+|.++..+...
T Consensus 438 l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 438 LLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 6655543 56777888999998877665
No 176
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.56 E-value=0.23 Score=45.45 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHH
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 341 (715)
++.+|..++.+++-|+...+.... ..++.+...|.++++.+|+.|+.+|..|...+--. .+..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 578999999999999877665433 35788999999999999999999999997643211 112234778888
Q ss_pred hCCCCHHHHHHHHHHHHHhHHHH
Q 005088 342 LQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
+.++++.++..|..++..+....
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999888763
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.50 E-value=0.36 Score=54.29 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=118.3
Q ss_pred HHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhh
Q 005088 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (715)
Q Consensus 100 ~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (715)
+.+.|++..|+.++...... ....+.....+..|..++.-+.+|+.+++.|+++.|+..+...-.........
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~-------~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~ 185 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDF-------SRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQA 185 (802)
T ss_pred hhcCCCHHHHHHHHHhhccc-------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccc
Confidence 45689999999999775431 11236777788888888888999999999999999999886332211111112
Q ss_pred HHHHHHHHHHHHHhccCccc----hhHHHhcC--------CcHHHHHhhcc----CCHHHHHHHHHHHHHHhcCChhhHH
Q 005088 180 SVIRRAADAITNLAHENSSI----KTRVRMEG--------GIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKN 243 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~----~~~~~~~g--------~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~ 243 (715)
++.+..+.++-.+..+.... ........ .+..|+..+.+ .++.+....+++|-+|+.++++...
T Consensus 186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 56666666665555322111 00111111 25556666654 3588999999999999998888776
Q ss_pred HHHhCCChHHHHHhhc--CC-CHHHHHHHHHHHHHhhcCC------hhHHHHHHHcCChHHHHhhhccCCh
Q 005088 244 QIVECNALPTLILMLR--SE-DSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCCS 305 (715)
Q Consensus 244 ~~~~~g~l~~L~~ll~--~~-~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~g~l~~L~~ll~~~~~ 305 (715)
.+++. ....+++=. .. .++- ...+.+++.++.+- ...++.+++.|++...+++|...-+
T Consensus 266 ~Lv~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 266 ALVEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 66553 122112111 11 1111 12244555554322 2467788889999988888865433
No 178
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.49 E-value=0.14 Score=52.69 Aligned_cols=259 Identities=19% Similarity=0.195 Sum_probs=148.6
Q ss_pred hHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccch
Q 005088 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (715)
Q Consensus 51 ~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~ 130 (715)
+...+.+.+..+++.|... ....++..++-.|+.-+.++..+..+...|.+..++..+.+...+ +
T Consensus 15 en~rf~Dev~ylld~l~~~-----~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d----------~ 79 (361)
T PF07814_consen 15 ENQRFADEVEYLLDGLESS-----SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD----------D 79 (361)
T ss_pred hhhhHHHHHHHHHhhcccC-----CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch----------H
Confidence 3445777888888888733 234578889999999999999999999999999999999665541 1
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHc--cc---cCCCc-------------------------------
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--RH---MDSNC------------------------------- 174 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~--~~---~~~~~------------------------------- 174 (715)
..-..++.++.-++.+...-..+.+.+.+..++.++. .. .....
T Consensus 80 ~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~ 159 (361)
T PF07814_consen 80 ILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSP 159 (361)
T ss_pred HHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhcccccccc
Confidence 2222233334444433333333334444555566665 10 00000
Q ss_pred chhhhHHHHHHHHHHHHHh--------------ccCccchhHHHhcCCcHHHHHhhcc----C------------CHHHH
Q 005088 175 SRAVNSVIRRAADAITNLA--------------HENSSIKTRVRMEGGIPPLVELLEF----T------------DTKVQ 224 (715)
Q Consensus 175 ~~~~~~~~~~a~~~L~~L~--------------~~~~~~~~~~~~~g~i~~L~~ll~~----~------------~~~v~ 224 (715)
..+..+-+..+..++-.++ ...+..++.+...|++..++..+.+ . +....
T Consensus 160 ~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l 239 (361)
T PF07814_consen 160 KPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDL 239 (361)
T ss_pred CCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHH
Confidence 0001122233444444442 1123345556667889898888751 1 12245
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhC--CCh-HHHHHhhcC---CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh
Q 005088 225 RAAAGALRTLAFKNDENKNQIVEC--NAL-PTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (715)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~~~~~~--g~l-~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ 298 (715)
..++.+|-+.+..+..++...... +.+ ..+..++.. ........+++.+.|++.+++..+..+...++...+..
T Consensus 240 ~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~ 319 (361)
T PF07814_consen 240 ERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGL 319 (361)
T ss_pred HHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHH
Confidence 678888998888777777776553 223 333333332 23455678999999999998887777765543322211
Q ss_pred hh-------c-------cCChHHHHHHHHHHHHHhcCCcc
Q 005088 299 LL-------S-------SCCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 299 ll-------~-------~~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
+. . ....+...-++.++-|++..++.
T Consensus 320 i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 320 IVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred HHHhhcccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence 11 0 01234555566777777655443
No 179
>PRK14707 hypothetical protein; Provisional
Probab=96.47 E-value=2.2 Score=51.94 Aligned_cols=261 Identities=20% Similarity=0.141 Sum_probs=135.3
Q ss_pred HHHhhHHHHHHh-hcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGL-LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~-l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
.+-..|+..|.. |.++++.+..+-..+ +...++-|+.-.+. ......+...-..++ .++..++.+-..|+-
T Consensus 305 ~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~------~~C~~Aa~~LA~rl~-~d~~l~~~l~~q~~a 376 (2710)
T PRK14707 305 PVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDN------PVCAAAVSALAERLV-ADPELRKDLEPQGVS 376 (2710)
T ss_pred hHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCc------hhHHHHHHHHHHHhc-cCHhhhcccchhHHH
Confidence 444444444443 557777765544433 44444445443332 133444444444444 466666555444444
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
..|-.+-+-++..+-..+...|..=..++++.+..+-..|+-..|-.+-+=++..+...+...|..-..++.+.++.+--
T Consensus 377 ~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p 456 (2710)
T PRK14707 377 SVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDP 456 (2710)
T ss_pred HHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh
Confidence 44444445566555555666665444467777777766666666655655578888888888888777777777666554
Q ss_pred cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHH-HHHHHHHHHHHhHHHH-HHH
Q 005088 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALGRLAQVI-TAG 367 (715)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~-v~~~a~~~L~~l~~~~-~~~ 367 (715)
.++...|-.+-+-++..+...++..|..=...+++.++.+--.++...|-.+-+-++.. ..+.+.+.-+.+.... ...
T Consensus 457 ~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~ 536 (2710)
T PRK14707 457 INVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRK 536 (2710)
T ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhh
Confidence 45444444444445656666666666554444555444333233333333333444433 3344444444444333 122
Q ss_pred HHhcCChHHHHHhh-ccCChhHHHHHHHHHHhc
Q 005088 368 IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 368 l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l 399 (715)
.+...-+..+++-+ +.++......+...|..+
T Consensus 537 ~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~ 569 (2710)
T PRK14707 537 AFDAHQVVNTLKALSKWPDKQLCAVAASGLAER 569 (2710)
T ss_pred hhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHH
Confidence 22222233333333 444444445555555554
No 180
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.44 E-value=0.0048 Score=50.50 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHH
Q 005088 650 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 697 (715)
Q Consensus 650 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 697 (715)
|+.++.+|..|+...|.+.|..|+.+||..+.++++|..++.+.+..+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~i 48 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSL 48 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHH
Confidence 567889999999999999999999999999999999999965544433
No 181
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.42 E-value=0.054 Score=47.23 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=96.9
Q ss_pred hHHHhcCCcHHHHHhhccCC------HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHH
Q 005088 201 TRVRMEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGV 272 (715)
Q Consensus 201 ~~~~~~g~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~ 272 (715)
..|...+|+..|++++.++. .++...++.++..|..+ ...........++..++...... +..+...++..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 35778899999999998765 36778888999988864 23333445556677777777654 68999999999
Q ss_pred HHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcch
Q 005088 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (715)
Q Consensus 273 L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (715)
|-++...++.....+.+.=.++.|+..|+..+++++..+...+-.+....++.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999888887777777778999999999999999999888777776544433
No 182
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.36 E-value=0.028 Score=45.01 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHH--hcCChHHHHHhhccCC
Q 005088 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIA--HNGGLVPLLKLLDSKN 385 (715)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~--~~~~l~~L~~ll~~~~ 385 (715)
|+.++.+|..++-.-+....... ..++++++..+.++++.||..|+.+|.|++...+..+. -..+.+.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44556666666543333322222 45789999999999999999999999999987744443 2466778888889999
Q ss_pred hhHHHHHHH
Q 005088 386 GSLQHNAAF 394 (715)
Q Consensus 386 ~~v~~~a~~ 394 (715)
+.|+..|..
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999877643
No 183
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.34 E-value=0.44 Score=49.15 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--------------------------C--------HHHHHHHHHH
Q 005088 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--------------------------D--------SAIHYEAVGV 272 (715)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--------------------------~--------~~v~~~a~~~ 272 (715)
|..+|-.+....+..-..+.+.+++..++..++.+ + ....+..+++
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 45555555554555555666677777776654210 0 1234455566
Q ss_pred HHHhhc---CChhHHHHHHH-cCChHHHHhhhccCC---hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC-C
Q 005088 273 IGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-S 344 (715)
Q Consensus 273 L~~L~~---~~~~~~~~~~~-~g~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~ 344 (715)
+..+.. +.....+.+.+ ..++..|..++.+.. +.+...|+.++..+...+|.....+.+.|+.+.+++.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 666654 22233344445 456677777777653 788889999999999888999999999999999999987 4
Q ss_pred ---CCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCCh-------hHHHHHHHHHHhccCCCchhhHHH
Q 005088 345 ---PDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNG-------SLQHNAAFALYGLADNEDNVADFI 410 (715)
Q Consensus 345 ---~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~-------~v~~~a~~~L~~l~~~~~~~~~l~ 410 (715)
++.++....-.+++.|+.+. .+.+.+.+.++.+.+++.+++. +........+-.|.++.+..+..+
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI 241 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence 56777777778888888888 7888888999999998865432 233344445555666655444433
No 184
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.32 E-value=0.054 Score=51.59 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.....|+.+|.-+|--++..+..+.....+..++.++. ...+.++.+++.+|..+..+++.+...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 56677889999999889999999999999999999995 45689999999999999999999999999999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhhc
Q 005088 259 RSE--DSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 259 ~~~--~~~v~~~a~~~L~~L~~ 278 (715)
++. +.+++..++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 875 67898888888877644
No 185
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.28 E-value=0.2 Score=51.68 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=106.5
Q ss_pred HHhhHHHHHHhhcC-ChhhHH---HHHh-cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc
Q 005088 132 VEKGSAFALGLLAV-KPEHQQ---LIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (715)
Q Consensus 132 v~~~a~~~L~~l~~-~~~~~~---~i~~-~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (715)
+....++++..+.. ++.... .+.+ ...+..|..++++... ....+...|+.++..+....|..-..+.+.
T Consensus 76 llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~-----FG~~v~s~a~~ivs~~I~nePT~~~~l~e~ 150 (379)
T PF06025_consen 76 LLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEV-----FGPSVFSLAINIVSDFIHNEPTSFSILQEA 150 (379)
T ss_pred HHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccc-----cchHHHHHHHHHHHHHHhcCCchhHHHHHc
Confidence 33344444444444 333322 2334 3444555556655432 112888899999999998888888889999
Q ss_pred CCcHHHHHhhc-c---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC-------HHHHHHHHHHHHH
Q 005088 207 GGIPPLVELLE-F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-------SAIHYEAVGVIGN 275 (715)
Q Consensus 207 g~i~~L~~ll~-~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~v~~~a~~~L~~ 275 (715)
|.++.++..+. . ++.++....-.+|..||- |....+.+.+.+.++.+++++.+++ .+.....-..+-.
T Consensus 151 Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DE 229 (379)
T PF06025_consen 151 GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDE 229 (379)
T ss_pred CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHH
Confidence 99999998887 3 457788888889999997 7888889999999999999987642 1444555667777
Q ss_pred hhcCChhHHHHHHH
Q 005088 276 LVHSSPNIKKEVLA 289 (715)
Q Consensus 276 L~~~~~~~~~~~~~ 289 (715)
|.++.+..+..+++
T Consensus 230 L~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 230 LMRHHPSLKPDIID 243 (379)
T ss_pred HHccCHHHHHHHHH
Confidence 78888887766654
No 186
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.73 Score=51.53 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=97.7
Q ss_pred hHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc---cCccchhHHHhcCCc
Q 005088 135 GSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGI 209 (715)
Q Consensus 135 ~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~g~i 209 (715)
+|..++..++ .+++. -.+.++.+++++.+....+..+...--.+.|+.++++++. .....+. ..+.=.+
T Consensus 391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHH
Confidence 4566666666 22332 2356788888887554433333333566778888888873 1222121 2223345
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
+.+...++++.--+|..|||++..++.-+=.....+ ..+++...+.|. +.+-.|+..|+-+|..+..+.+.....+.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 566667778888899999999999994222222222 234666677776 66778999999999999766554423222
Q ss_pred H--cCChHHHHhhhccCChHH
Q 005088 289 A--AGALQPVIGLLSSCCSES 307 (715)
Q Consensus 289 ~--~g~l~~L~~ll~~~~~~~ 307 (715)
. .+.++.|+.+.+.-+.+.
T Consensus 543 ~hvp~~mq~lL~L~ne~End~ 563 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDD 563 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhH
Confidence 2 234455555555444333
No 187
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=96.20 E-value=0.4 Score=47.92 Aligned_cols=246 Identities=15% Similarity=0.122 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCChhH-HHHHHHcCCh
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGAL 293 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~l 293 (715)
+..+...++.+|+|+...++..+....+......+.+.+... ..++...=++.|.-+..-.... .+.+.+.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 357888999999999998888888888877777776665431 1233344444444444333343 3455678999
Q ss_pred HHHHhhhccC---C------h------HHHHHHHHHHHHHhcCCcchhH--HHhhc----CChHHHHHHhC--CCCHHHH
Q 005088 294 QPVIGLLSSC---C------S------ESQREAALLLGQFAATDSDCKV--HIVQR----GAVRPLIEMLQ--SPDVQLR 350 (715)
Q Consensus 294 ~~L~~ll~~~---~------~------~~~~~a~~~L~~l~~~~~~~~~--~~~~~----~~l~~L~~~L~--~~~~~v~ 350 (715)
+.+.+++.+. + + ....+++.++.|++........ .-... +++...+..+. ....++-
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elh 269 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELH 269 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 9999999752 1 1 2334566777787654322111 11111 12222222221 1222232
Q ss_pred HHHHHHHHHhHHHH-------------HHH--HHhcCChHHHHHhhcc---------CChhHHHHHHHHHHhccCCCchh
Q 005088 351 EMSAFALGRLAQVI-------------TAG--IAHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDNV 406 (715)
Q Consensus 351 ~~a~~~L~~l~~~~-------------~~~--l~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~ 406 (715)
..+..-|.|.-... .+. ..+.-..+.+..+|+. ...+...-.+..|..+|+...+.
T Consensus 270 shav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~ 349 (532)
T KOG4464|consen 270 SHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM 349 (532)
T ss_pred hccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH
Confidence 22322222222111 111 1222234445555532 23445556778888889999999
Q ss_pred hHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccch
Q 005088 407 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT 481 (715)
Q Consensus 407 ~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 481 (715)
..+.+..++|+|.+....... ...+-..++.+|..++..++..|+..|.-|+...-++.
T Consensus 350 Rkylr~qVLPPLrDV~~RPEv----------------g~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~rm 408 (532)
T KOG4464|consen 350 RKYLRQQVLPPLRDVSQRPEV----------------GQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVNRM 408 (532)
T ss_pred HHHHHHhcCCchhhhhcCcch----------------hHHHHHhhHhheeccchhhhhhhHHHHHHHhhcchhhh
Confidence 999999999998853221111 12234568888888989999999999988876654443
No 188
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.18 E-value=0.053 Score=51.23 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhc
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (715)
-...|+..|..++++|+.|..+.++...-.|.++|+..+... ++ ..+|..++.+++.+. ++++....+...
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r------~~-E~LRLtsLGVIgaLvK~d~~evi~fLl~t 138 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTR------PF-EYLRLTSLGVIGALVKTDDPEVISFLLQT 138 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SH------HH-HHHHHHHHHHHHHHHTT--HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhcccccc------cc-chhhHhHHHHHHHHHcCCcHHHHHHHHhh
Confidence 356677777788889999999999999999999998776532 11 278899999999999 788888899999
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccch------hHHH-hcCCcHHHH-HhhccCCHHHHHHHH
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK------TRVR-MEGGIPPLV-ELLEFTDTKVQRAAA 228 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~------~~~~-~~g~i~~L~-~ll~~~~~~v~~~a~ 228 (715)
+++|..++.++..+. -.+..|..++..+..++.... +.+. -..++..++ .+.+.+++.+.+..+
T Consensus 139 EiiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhII 210 (262)
T PF04078_consen 139 EIIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHII 210 (262)
T ss_dssp THHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH
T ss_pred chHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 999999999988753 445556666766664332111 1111 112333333 345678899999999
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHH-----HhhcCCCHHHHHHHHHHHHHh
Q 005088 229 GALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIHYEAVGVIGNL 276 (715)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~g~l~~L~-----~ll~~~~~~v~~~a~~~L~~L 276 (715)
++-..|+. ++..+..+.. .+|..+ .-+-.+|+.++.+-...+.|+
T Consensus 211 rCYlRLsd-nprar~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 211 RCYLRLSD-NPRAREALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHTT-STTHHHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHcc-CHHHHHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999995 7777776654 222211 111124777888777777776
No 189
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.26 Score=53.00 Aligned_cols=161 Identities=18% Similarity=0.092 Sum_probs=105.5
Q ss_pred CChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHH-hCCCCHHHHHHHHHHHHHhHHHHHHHHH
Q 005088 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITAGIA 369 (715)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~l~ 369 (715)
++=+.+-+++.+.++-+|.....++.---.+... .+++..|+.. .++.+.+||+.|..+|+-++..+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d----- 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD----- 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecC-----
Confidence 3445566777788888887776655432222222 3456777777 56688999999999998776554
Q ss_pred hcCChHHHHHhh-ccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhH
Q 005088 370 HNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 448 (715)
Q Consensus 370 ~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (715)
...++..+.+| .+.|+-||..++.+|+-.|....+.. .+
T Consensus 587 -p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e---------------------------------------Ai 626 (929)
T KOG2062|consen 587 -PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE---------------------------------------AI 626 (929)
T ss_pred -hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------------------------------------HH
Confidence 34556677777 67789999999999998775543221 22
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcch
Q 005088 449 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 503 (715)
Q Consensus 449 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 503 (715)
..|-++..++..-||..|+.++..+.........-.-.+..+.+.+++.+++++.
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 3344556677778999999988877432221111112355667888888877664
No 190
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.13 E-value=0.01 Score=48.76 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=62.3
Q ss_pred hhhHHHHHHHH-hhhhhhHHHHHHHHHHhhcCC-CccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 445 GRVLNHLLYLM-RVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 445 ~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
..++..|+.+| .+.++.+..-||.=|+.++.. |.++.++.+.|+...+.+++.+++++||..|..|+..|..+.+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w 118 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW 118 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 34788899999 455888888899999999664 6688888778999999999999999999999999999887643
No 191
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=2.8 Score=45.63 Aligned_cols=294 Identities=13% Similarity=0.071 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhhcc-ccchH-HhHHHHHHHHHHHHHHhc--C-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccch
Q 005088 56 LSEVSAQVNVLNTT-FSWLE-ADRAAAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (715)
Q Consensus 56 ~~~v~~lv~~L~~~-l~~~~-~~~~~~~~a~~~L~~l~~--~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~ 130 (715)
...++-++..|.+. .+.+. .++...+.|++.++++.+ + +....-+.+.=+++.+++.++++..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------ 474 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------ 474 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------
Confidence 44555566666333 22222 345556778888888766 3 3334445555567888888888877
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh--cCC
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGG 208 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~g~ 208 (715)
-++.+|+..+..+. .+.........+......++++..- .++-.|+.++..+..+. .....+.. .+.
T Consensus 475 fL~Srace~is~~e--eDfkd~~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~t 543 (970)
T COG5656 475 FLKSRACEFISTIE--EDFKDNGILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPET 543 (970)
T ss_pred chHHHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHH
Confidence 89999999999996 2222222333445666677777443 77778888888887644 33332221 123
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHH-HHhcCChhhHHHHHh---CCChHHHHHhhcCC------CHHHHHHHHHHHHHhhc
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVE---CNALPTLILMLRSE------DSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~-~L~~~~~~~~~~~~~---~g~l~~L~~ll~~~------~~~v~~~a~~~L~~L~~ 278 (715)
++.|+.+-+.-+.++...++..+. ..+..-......++. ..+++....++..+ .++-+..|.+.|..+..
T Consensus 544 mekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~s 623 (970)
T COG5656 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIES 623 (970)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHH
Confidence 333444433333333333332222 222110111111111 01222223333322 12344555555555421
Q ss_pred ------CChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCC-HHHHH
Q 005088 279 ------SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLRE 351 (715)
Q Consensus 279 ------~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~v~~ 351 (715)
..+.. -.-......|.+--.+.+.-.+.-.+|+..+-+.+....+.. -+.-|+...+.+++.+.. ....+
T Consensus 624 miLSlen~p~v-Lk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~e 700 (970)
T COG5656 624 MILSLENRPLV-LKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSE 700 (970)
T ss_pred HHHhcccchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHH
Confidence 11111 111223455555555666667777888887776643211110 111244455555555544 36677
Q ss_pred HHHHHHHHhHHHHHHHHHhcCChH
Q 005088 352 MSAFALGRLAQVITAGIAHNGGLV 375 (715)
Q Consensus 352 ~a~~~L~~l~~~~~~~l~~~~~l~ 375 (715)
.+..++.|+...++..+.+.+..-
T Consensus 701 e~~~al~nfityG~~ef~~~~~y~ 724 (970)
T COG5656 701 EVADALDNFITYGKTEFMDAGIYG 724 (970)
T ss_pred HHHHHHHHHHHhCccccccccchh
Confidence 888899999888866666665543
No 192
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.04 E-value=1.9 Score=47.96 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.+...+.+++...+.....+...+. ..+...+..+. +..+-++..|+.+++..+. ...... ...++++.|+.+.
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~L~qla 539 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDGLLQLA 539 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHHHHHHc
Confidence 5555888888877754333332221 12233344333 4446677888888887772 211111 1246778888888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc--cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 336 (715)
...+.++......+|+..+.-+++. ....++.+.|.++.++. +.++.+...+-.++..++. ...+.. -.....+|
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g-~m~e~~iP 616 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYG-PMQERLIP 616 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhc-chHHHHHH
Confidence 8888999999999999998887776 44456778888887764 4457666666666666653 112222 22345789
Q ss_pred HHHHHhCCCC----HHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccC
Q 005088 337 PLIEMLQSPD----VQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 337 ~L~~~L~~~~----~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 401 (715)
.+++.|..+. +.....++..|..+.++. -....-.-+.|++.+.. ++.+.....++..+|+.+..
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 9999997755 667777888888777766 22233334566666655 78888888999999988853
No 193
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.96 E-value=0.014 Score=47.99 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=60.9
Q ss_pred CcHHHHHhh-ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005088 208 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 208 ~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (715)
.+..|+.+| .+.++.+..-||.=|+.++...|..+..+.+.|+-..++.++.++|++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 567888998 45578888889999999999889999999889999999999999999999999999988743
No 194
>PRK14707 hypothetical protein; Provisional
Probab=95.92 E-value=4.7 Score=49.34 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=112.7
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCC
Q 005088 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (715)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 220 (715)
..++.++..+..+-..+ +.-.++-|+.-.+. .+-+.++..|..-..+++..+..+-..++-..|-.+-+-++
T Consensus 274 ~rl~~~~~l~~al~~q~-vanalNalSKwpd~-------~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd 345 (2710)
T PRK14707 274 ERLVDDPGLRKALDPIN-VTQALNALSKWADL-------PVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPD 345 (2710)
T ss_pred HHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCc-------hHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCC
Confidence 33445555555444333 33333334333322 44444444444443446655544333333333333444455
Q ss_pred HH-HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhh
Q 005088 221 TK-VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (715)
Q Consensus 221 ~~-v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 299 (715)
.. .+..+...-..|+ .++..+..+-..|+-..|-.+-+=++..+...+...|..=...+.+.++.+-..|+-..|-.+
T Consensus 346 ~~~C~~Aa~~LA~rl~-~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnal 424 (2710)
T PRK14707 346 NPVCAAAVSALAERLV-ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNAL 424 (2710)
T ss_pred chhHHHHHHHHHHHhc-cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHh
Confidence 44 4444444444566 466666666544444444444444677777777777776666777777776666666666666
Q ss_pred hccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHH
Q 005088 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR 359 (715)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~ 359 (715)
-+-++..+...++..|.--...+.+.++.+--.+ +...++.++. ++..+...++..|..
T Consensus 425 sKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~ 484 (2710)
T PRK14707 425 AKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAA 484 (2710)
T ss_pred hcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHH
Confidence 5666777777777777665556655554443333 3344444444 676666666666553
No 195
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.85 E-value=0.024 Score=51.02 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=70.4
Q ss_pred ccEEEEecCeeecchHHHHhhccH--HHHHhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCCcc-cCHHHHHHHH
Q 005088 548 SDVTFLVEGRRFYAHRICLLASSD--AFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLL 622 (715)
Q Consensus 548 ~d~~~~~~~~~~~~h~~iL~~~s~--~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~ll 622 (715)
+-|.+-++|+.|..-..-|..|-| .+..||.+.-+ +.+.+-..+-|-+|..|+.+|.|+-.|++. .+.-.+..++
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvL 88 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVL 88 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHH
Confidence 346777888888887776766644 57788876422 222223444577899999999999999987 4566889999
Q ss_pred HHHHHhChhhHHHHHHH
Q 005088 623 RAADQYLLEGLKRLCEY 639 (715)
Q Consensus 623 ~~A~~~~~~~L~~~~~~ 639 (715)
+.|++|++-+|++..+.
T Consensus 89 eeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 89 EEARFFQILSLKDHLED 105 (302)
T ss_pred HHhhHHhhHhHHhHHhh
Confidence 99999999999998877
No 196
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.83 E-value=2 Score=48.52 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=115.7
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc----cCC----HHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQR 225 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~v~~ 225 (715)
.+.|++..++.++....+....+ ++....+..|...|. -+.+|+.+...|+++.|+..+. .+. +.+.+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 45688999999998765432222 677777777777775 6888999999999999988774 333 56777
Q ss_pred HHHHHHHHHhcCChhhHHHH------HhCC--------ChHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHHHHH
Q 005088 226 AAAGALRTLAFKNDENKNQI------VECN--------ALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEV 287 (715)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~------~~~g--------~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (715)
..+.++..+.... +...+ .... -+..|+..+.++ ++.+....+++|..|+.++++..+.+
T Consensus 190 ~LL~IiE~ll~ea--~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 190 QLLEIIESLLSEA--NSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHHHH--hhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 7777777766421 11111 1111 255666666553 68899999999999999988776665
Q ss_pred HHcCChHHHHhhhcc-----C-ChHHHHHHHHHHHHHhcCC------cchhHHHhhcCChHHHHHHhCCCCHH
Q 005088 288 LAAGALQPVIGLLSS-----C-CSESQREAALLLGQFAATD------SDCKVHIVQRGAVRPLIEMLQSPDVQ 348 (715)
Q Consensus 288 ~~~g~l~~L~~ll~~-----~-~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~~L~~~~~~ 348 (715)
++. +-..++- . ..+- ...+.++..++.+- ...+..+++.|++...++.|...-|.
T Consensus 268 v~~-----F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 268 VEH-----FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHH-----HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 432 2222221 1 1111 12244455554322 34567788889998888888654433
No 197
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=2.1 Score=49.05 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=130.2
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCc-cchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~g~i 209 (715)
.+|..+.+.|..++..+.......+ -+..+.+.|.+...... ...+...+.+|..+....+ +... +.. ..+
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs~~----~~~~~~rl~~L~~L~~~~~~e~~~-~i~-k~I 740 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQSSS----SPAQASRLKCLKRLLKLLSAEHCD-LIP-KLI 740 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHhccHHHHH-HHH-HHH
Confidence 8999999999999955444333222 23444444433322111 1667777777777775444 2222 222 233
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC------ChHHHHHhhcC----CCHHHHHHHHHHHHHhhcC
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN------ALPTLILMLRS----EDSAIHYEAVGVIGNLVHS 279 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g------~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~ 279 (715)
+-++-.++..+...++.+..+|..++. .....+.| .+...+..+.. +...+....+-++..+...
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 333334477788888888888888882 00111111 33334443333 2222222223444444332
Q ss_pred ChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005088 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (715)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~ 359 (715)
.........-.+.+..+..+|.+.+++++..|...+..++...++.........+++.+..++++....++...-..|-.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222222234456677777788899999999999999988777665544445578888998888888888888777777
Q ss_pred hHHHH
Q 005088 360 LAQVI 364 (715)
Q Consensus 360 l~~~~ 364 (715)
|....
T Consensus 896 Lirkf 900 (1176)
T KOG1248|consen 896 LIRKF 900 (1176)
T ss_pred HHHHh
Confidence 76655
No 198
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.75 E-value=0.47 Score=43.39 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
.++.+++.+++.||...+..- ...++.+...|.++++.+|..|+.+|..|...+.. + .+..++..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k---~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-K---VKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-e---ehhhhhHHHHHHHc
Confidence 789999999999997665432 35678999999999999999999999999863211 1 11223477778889
Q ss_pred CCCHHHHHHHHHHHHHhhcC
Q 005088 260 SEDSAIHYEAVGVIGNLVHS 279 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~ 279 (715)
+++++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999655
No 199
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.72 E-value=0.034 Score=40.42 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=42.7
Q ss_pred ecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 005088 554 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 608 (715)
Q Consensus 554 ~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 608 (715)
.||..|.+.+.+.. .|+.++.|+.+...+.. .|++++++...++.+++|++.
T Consensus 8 sDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 8 SDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred CCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 46899999998887 99999999986433332 799999999999999999964
No 200
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.70 E-value=0.074 Score=42.63 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCC
Q 005088 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (715)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~ 345 (715)
|..++.+|...+..-+...... -..+++.++..+.+.++.+|..|+.+|.|++......... .-..+++.|.+++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 4455666666654443332222 2447899999999999999999999999998533222111 1246778888889999
Q ss_pred CHHHHHHHHHHHHHh
Q 005088 346 DVQLREMSAFALGRL 360 (715)
Q Consensus 346 ~~~v~~~a~~~L~~l 360 (715)
++.|+..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99998655 555443
No 201
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=3.2 Score=43.02 Aligned_cols=252 Identities=17% Similarity=0.098 Sum_probs=127.3
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh-hhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH
Q 005088 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (715)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 336 (715)
..+++..++..|++.|+|.+...|.-....... .+..++. +..+.+.+|..++..+|..+...-......-.--.+.-
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 345778999999999999988755433332222 3333444 34445688999998888877532111111111112334
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHh--cCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHH
Q 005088 337 PLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 410 (715)
Q Consensus 337 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 410 (715)
.+..+..+.++++|.++....+.|+... +..+.+ .+....++-.+.++++.+. .||+.....+.- +...=.
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~p--~l~rke 422 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCYP--NLVRKE 422 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcCc--hhHHHH
Confidence 5666778889999999998888887665 333332 1233344445567777664 444544444422 221111
Q ss_pred hhccccccccc---hhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCC
Q 005088 411 RVGGVQKLQDG---EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 487 (715)
Q Consensus 411 ~~~~i~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 487 (715)
..+.++...+. .+......+|+......-+..+ -......-++++.-+.++..+..--.++.-....+ .-...+
T Consensus 423 ~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~--~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~-~c~~~d 499 (533)
T KOG2032|consen 423 LYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILM--LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRA-ACSSAD 499 (533)
T ss_pred HHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHH--HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHH-HHHHhh
Confidence 22333322221 1111122233222111111100 00111122223333455555444433332221111 111223
Q ss_pred c---HHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 488 G---LELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 488 ~---i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
+ ...|..+..++-++++..|..|+-.+..
T Consensus 500 ~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 500 GLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3 3456777788999999999999877654
No 202
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.64 E-value=1.6 Score=48.35 Aligned_cols=317 Identities=14% Similarity=0.132 Sum_probs=172.1
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
...+...+...+... .-|....++.+++...++. +.+-. +.+ ..+...+..+.-..+ +-++..|+
T Consensus 447 l~~l~~~~~~~l~~~-e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~-----------~~~ki~a~ 512 (1005)
T KOG2274|consen 447 LIELTIMIDNGLVYQ-ESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVP-----------PPVKISAV 512 (1005)
T ss_pred HHHHHHHHHhhcccc-cCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCC-----------CchhHHHH
Confidence 333444444444333 2344555777777755542 11111 110 112333444433332 16777788
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh-
Q 005088 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL- 216 (715)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll- 216 (715)
+++...+...-+.. ...+++..|+++.....+ ++....+.+|...|.-+++... -.+....|.++.+.
T Consensus 513 ~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 513 RAFCGYCKVKVLLS--LQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFL 581 (1005)
T ss_pred HHHHhccCceeccc--cchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHH
Confidence 87777762221110 122345555556555544 8888889999999976665443 33345556665544
Q ss_pred -ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHHcC
Q 005088 217 -EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (715)
Q Consensus 217 -~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g 291 (715)
.+++|.+...+-.++..++. ...+..-+. ...+|.++..+..+. ......++..|..+....+.-....+-.-
T Consensus 582 k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~ 659 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQ-IAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY 659 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHH-HHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 35678777777777877775 333333333 247899999998765 56777777777767655443333333344
Q ss_pred ChHHHHhhh-ccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH--HHHHHhCC-CCHHHHHHHHHHHHHhHH----H
Q 005088 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR--PLIEMLQS-PDVQLREMSAFALGRLAQ----V 363 (715)
Q Consensus 292 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~--~L~~~L~~-~~~~v~~~a~~~L~~l~~----~ 363 (715)
++|.+.++. .+.+.++...+..+|+.+.+.+.+........++.. .+++.+.. -+|+.-+.++..++.+.. +
T Consensus 660 ~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~ 739 (1005)
T KOG2274|consen 660 AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITH 739 (1005)
T ss_pred HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHH
Confidence 567777665 455677888888899988876555444433333333 34433321 233333344444444433 2
Q ss_pred HHHHHHhc--CChHHHH-HhhccCChhHHHHHHHHHHhccCC
Q 005088 364 ITAGIAHN--GGLVPLL-KLLDSKNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 364 ~~~~l~~~--~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~ 402 (715)
..+.+... .++..++ ++.+.....+-..-+.++..|...
T Consensus 740 a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 740 ASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 22222211 1233333 333556677777888888887543
No 203
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.64 E-value=0.14 Score=56.49 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=105.6
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
..+|.|++.........+..-+.+|.++....|. +.+.. ...+|.|++.|.-+|..++..+..++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 5678888888755555666677777877753333 33322 3567888888888999999999999988865444332
Q ss_pred HHHHHcCChHHHHhhhccCC---hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 005088 285 KEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~ 358 (715)
..- -.-++|.++.+=.+.+ ..+|..|+.+|..+...-|...-...+..++..|+..|.++..-+|+.|+.+=.
T Consensus 945 t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 945 TEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred hHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 221 1335677777666555 578888999999998756655555566778899999999888889998876643
No 204
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=0.59 Score=51.32 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=94.6
Q ss_pred HHhCCChHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCChhHHHHHHHc--------CChHHHHhhhcc----CC
Q 005088 245 IVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLSS----CC 304 (715)
Q Consensus 245 ~~~~g~l~~L~~ll~~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--------g~l~~L~~ll~~----~~ 304 (715)
+.+.+++..++.+..- +-.+....|+.+|+-+..- |..+..+... .++.++++.-.. .+
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 4445555555555432 2246677777777776443 4444444421 244544444332 36
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHhhcCChH--HHHHHhC-CCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhh
Q 005088 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVR--PLIEMLQ-SPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLL 381 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~--~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll 381 (715)
++++..|+.++-|+....|.++...+..-+-+ .=-..+. .+.....++...-. ...+...+|+..|+++|
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~m-------w~~Vr~ndGIkiLl~Ll 748 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQM-------WEAVRGNDGIKILLKLL 748 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHH-------HHHHhcCccHHHHHHHH
Confidence 89999999999999877777665433210000 0000111 11122222222222 45566789999999999
Q ss_pred ccCC-----hhHHHHHHHHHHhccCCCchhhHHHhh
Q 005088 382 DSKN-----GSLQHNAAFALYGLADNEDNVADFIRV 412 (715)
Q Consensus 382 ~~~~-----~~v~~~a~~~L~~l~~~~~~~~~l~~~ 412 (715)
+-+. ..+|..||.+|.-|++++..+..+.+.
T Consensus 749 ~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 749 QYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred hccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 7654 468999999999999999888776653
No 205
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=5 Score=45.38 Aligned_cols=235 Identities=16% Similarity=0.139 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc---CChhhHH
Q 005088 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQ 151 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~ 151 (715)
+.+.+.+.+..+..+-. ++++-...-+.--+|.++.-+..... .++...+..|---. +.-.+++
T Consensus 480 nkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkilEyAVtvvncvPeqE 547 (2799)
T KOG1788|consen 480 NKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKILEYAVTVVNCVPEQE 547 (2799)
T ss_pred CcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHHHHHHhhhccCcHHH
Confidence 44467777777777765 67766666666778888777765544 66666665543211 1111111
Q ss_pred HHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC------------
Q 005088 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT------------ 219 (715)
Q Consensus 152 ~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~------------ 219 (715)
+-.|.-+|+.+-.. .+....+.....|..-+...+..+.+-|.+..|...++..
T Consensus 548 -------LlSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgv 613 (2799)
T KOG1788|consen 548 -------LLSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV 613 (2799)
T ss_pred -------HHHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH
Confidence 11233344433221 3333344444444444555555666666666655444320
Q ss_pred -------------------------CH-------------HHH---HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 220 -------------------------DT-------------KVQ---RAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 220 -------------------------~~-------------~v~---~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.+ .+. ...-.+|..+...+.+|+..+.++.++..++.++
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl 693 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL 693 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence 00 000 1123456677777888888898888888888777
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC------------ChHHHHHHHHHHHHHhcCCcchh
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------------CSESQREAALLLGQFAATDSDCK 326 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~------------~~~~~~~a~~~L~~l~~~~~~~~ 326 (715)
-+++-|...++++..|....+.... ..-+-.+++.|+++ ..........+++.+...+...+
T Consensus 694 --indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq 767 (2799)
T KOG1788|consen 694 --INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ 767 (2799)
T ss_pred --echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence 4566677778888888655443111 11223344444441 12344455667888876666777
Q ss_pred HHHhhcCChHHHHHHh
Q 005088 327 VHIVQRGAVRPLIEML 342 (715)
Q Consensus 327 ~~~~~~~~l~~L~~~L 342 (715)
..+.+.+++..|...|
T Consensus 768 rvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 768 RVFGEATGFSLLLTTL 783 (2799)
T ss_pred eehhccccHHHHHHHH
Confidence 7788888888877766
No 206
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.46 E-value=0.044 Score=40.87 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccCCCchhhHHHhhc
Q 005088 350 REMSAFALGRLAQVI--TAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVG 413 (715)
Q Consensus 350 ~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 413 (715)
.+.|+|++++++... ...+.+.+.++.++++. +++...+|..|..+|+-++++.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 468999999999887 55555679999999999 57789999999999999999998888877765
No 207
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.37 Score=52.85 Aligned_cols=209 Identities=14% Similarity=0.071 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
.++..++..|..+.... .....+...+++...+..+++.++-+--+|+..+..||.- ....+++.+...-.
T Consensus 742 pik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDLSEEYL 812 (982)
T ss_pred cchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHHHHHHH
Confidence 77888899999998633 4455666778899999999999999999999988888852 22356777776433
Q ss_pred CC----CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCCh
Q 005088 260 SE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (715)
Q Consensus 260 ~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 335 (715)
+. .++.+...-.++.++...-.+....... -++..++..+++++...|..++..++++|........... ...+
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~ 890 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEVL 890 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHHH
Confidence 21 1344555556666665433333322222 4567777777877777888999999999853221111111 2234
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhHHHH-HHH--H---HhcCChHHHHHhhc-cCChhHHHHHHHHHHhc
Q 005088 336 RPLIEMLQ-SPDVQLREMSAFALGRLAQVI-TAG--I---AHNGGLVPLLKLLD-SKNGSLQHNAAFALYGL 399 (715)
Q Consensus 336 ~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~-~~~--l---~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l 399 (715)
..++.+.+ ++.+.+|++|+..+..+-.+. +.. + ..-+....+..... +.+..++..|+.++..+
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 45555554 467889999999998887654 111 1 11233344444443 34455666666666554
No 208
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.35 E-value=1 Score=43.62 Aligned_cols=201 Identities=12% Similarity=0.110 Sum_probs=142.6
Q ss_pred HHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHH----HH-hCCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005088 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ----IV-ECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (715)
Q Consensus 202 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~----~~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (715)
.+...|.+..++..+..-+.+-+..++.+..++-.-.-..+.. +. ....+..|+.--.. .+++...+...|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 4567788999999998888888888888888887533222221 11 12333444433211 366666666666555
Q ss_pred hcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCC----hHHHHHHhCCCCHHHHHH
Q 005088 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLREM 352 (715)
Q Consensus 277 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~~L~~~~~~v~~~ 352 (715)
. ..+...+.+..+.-+.....+++.+.-++...|..+...+..........+...+. .+.--.++++.+.-.++.
T Consensus 153 i-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 I-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred H-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 3 44666777788888888888888888888888888888776544444444443332 233556778889999999
Q ss_pred HHHHHHHhHHHH------HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCc
Q 005088 353 SAFALGRLAQVI------TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 404 (715)
Q Consensus 353 a~~~L~~l~~~~------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 404 (715)
+...++.+.... .+++.+...+..++.+|++++..+|..|-...+-...++.
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999999987665 6677777889999999999999999999999998876654
No 209
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.41 Score=52.54 Aligned_cols=212 Identities=17% Similarity=0.146 Sum_probs=129.3
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
.++-.++..|..+....+....+...+++...+..|++.++ -+--.|+..+..||.- .....+|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcev--------y~e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEV--------YPEDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHh--------cchhhHH
Confidence 67888999999999555666677788899999999998876 6667888888888853 3345667
Q ss_pred HHHHhh-cc---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 211 PLVELL-EF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 211 ~L~~ll-~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
.+...- .. ..++.+..+-.++.++...-.+......+ -.+..+++..++++...|..++..+++++.........
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 776633 22 11344444556666666422222111111 34566777777788888999999999997643321111
Q ss_pred HHHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhh---cCChHHHHHHhCC-CCHHHHHHHHHHHHHh
Q 005088 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l 360 (715)
.+ ...+..++.+.. +++.-+|+.|+-.+..+-.+.......+.. .+....+.+..+. ++..++..++.++-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 112333444443 456888999999888886544433222221 1233344444444 4555676776666443
No 210
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.28 E-value=0.031 Score=33.94 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=19.7
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHhHH
Q 005088 335 VRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 335 l~~L~~~L~~~~~~v~~~a~~~L~~l~~ 362 (715)
+|.++++++++++.||..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5677777777777777777777777664
No 211
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.24 E-value=9 Score=45.50 Aligned_cols=144 Identities=12% Similarity=0.150 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhH-HHHHhcCChHHHHhhhcCCCCcccccCCCccchHHH
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~-~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (715)
...-...+..+...+.. ....++..|+.+|..+.. +|... ..-++.|+ -.-+.+... .||
T Consensus 811 ~~sfD~yLk~Il~~l~e--~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~Dssa------------sVR 872 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSVLGE--NAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSSA------------SVR 872 (1692)
T ss_pred HHhhHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccchh------------HHH
Confidence 34455566666666553 366789999999999988 55432 22233332 233445555 899
Q ss_pred hhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
+.|+..++... ..++...... ..+.+-+.+.. ..|+..++..+..+|...|..... +..+
T Consensus 873 EAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtg--------vsVRKRvIKIlrdic~e~pdf~~i------~~~c 933 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSIPELIFQYY-----DQIIERILDTG--------VSVRKRVIKILRDICEETPDFSKI------VDMC 933 (1692)
T ss_pred HHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCc--------hhHHHHHHHHHHHHHHhCCChhhH------HHHH
Confidence 99999999877 6666533322 22232222222 288999999999999766654331 2233
Q ss_pred HHhhc---cCCHHHHHHHHHHHHHHhc
Q 005088 213 VELLE---FTDTKVQRAAAGALRTLAF 236 (715)
Q Consensus 213 ~~ll~---~~~~~v~~~a~~~L~~L~~ 236 (715)
++++. +....++.-++.++.++-.
T Consensus 934 akmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 934 AKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 34442 2223356666666655543
No 212
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.21 E-value=0.68 Score=47.74 Aligned_cols=268 Identities=15% Similarity=0.154 Sum_probs=145.6
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (715)
|..++.=|....+ ..+|..++--|..-+.+++.+..+..+|....+++.+.+..++ .+...+
T Consensus 23 v~ylld~l~~~~~-----------~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~ 84 (361)
T PF07814_consen 23 VEYLLDGLESSSS-----------SSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALA 84 (361)
T ss_pred HHHHHhhcccCCC-----------ccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHH
Confidence 6667777763322 2789889888888889999999999999999999999665542 355556
Q ss_pred HHHHHHHhccCccchhHHHhcCCcHHHHHhhcc--C---CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--
Q 005088 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-- 258 (715)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-- 258 (715)
+.++..+...+......+.+.+....++.++.. . .......-...+.... .+.+..+...+
T Consensus 85 ~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~------------~~~~~~~~~~~~~ 152 (361)
T PF07814_consen 85 TAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ------------QKSRSLCKELLSS 152 (361)
T ss_pred HHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH------------HHHHHHHHHHHhc
Confidence 556666554454444444455566666777761 1 0000000000000000 00111111111
Q ss_pred ----c---CCCHHHHHHHHHHHHHhh--------------cCChhHHHHHHHcCChHHHHhhhcc----C----------
Q 005088 259 ----R---SEDSAIHYEAVGVIGNLV--------------HSSPNIKKEVLAAGALQPVIGLLSS----C---------- 303 (715)
Q Consensus 259 ----~---~~~~~v~~~a~~~L~~L~--------------~~~~~~~~~~~~~g~l~~L~~ll~~----~---------- 303 (715)
. .....-+..++.++-.++ ...+..+..+...|++..++..+.+ .
T Consensus 153 ~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~ 232 (361)
T PF07814_consen 153 GSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPS 232 (361)
T ss_pred cccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccc
Confidence 0 112223344444444442 1112344566667888888888752 1
Q ss_pred --ChHHHHHHHHHHHHHhcCCcchhHHHhhc--CChHHHHHH-hC---CCCHHHHHHHHHHHHHhHHHH---HHHHHhcC
Q 005088 304 --CSESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIEM-LQ---SPDVQLREMSAFALGRLAQVI---TAGIAHNG 372 (715)
Q Consensus 304 --~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~~-L~---~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~ 372 (715)
+......+..+|-+.+..++.++..+... +.++.+... +. .....+...++..+.|++.++ +..+...+
T Consensus 233 ~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 233 LQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 11233456778888877777777666553 233333322 22 233445678888888888776 44444432
Q ss_pred ChHHH---HHh----hc-------cCChhHHHHHHHHHHhccCCC
Q 005088 373 GLVPL---LKL----LD-------SKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 373 ~l~~L---~~l----l~-------~~~~~v~~~a~~~L~~l~~~~ 403 (715)
+...+ ... +. ...-+....++++|.||+...
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 22221 111 11 123456678888888887654
No 213
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=1 Score=51.47 Aligned_cols=218 Identities=17% Similarity=0.162 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHh--cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CCh-hhHH
Q 005088 76 DRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP-EHQQ 151 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~-~~~~ 151 (715)
+..+|..+.+.|..++..+.......+ ..+...|..-+++... ..+...+.+|..|. ..+ +...
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~------------~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS------------PAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHHHHHHhccHHHHH
Confidence 455788888888888876333222222 1233444444555444 77888888888888 333 4443
Q ss_pred HHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcC------CcHHHHHhhcc----CCH
Q 005088 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG------GIPPLVELLEF----TDT 221 (715)
Q Consensus 152 ~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g------~i~~L~~ll~~----~~~ 221 (715)
.+.. .|+.++-.++..+. ..++.+..+|..++.. +...+.| .+..++..+.. ...
T Consensus 735 ~i~k--~I~EvIL~~Ke~n~--------~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~ 799 (1176)
T KOG1248|consen 735 LIPK--LIPEVILSLKEVNV--------KARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDST 799 (1176)
T ss_pred HHHH--HHHHHHHhcccccH--------HHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHH
Confidence 3332 35555555565554 7778888888888720 0111111 33344444432 222
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc
Q 005088 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (715)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 301 (715)
.+....+-++..+............-.+.++.+..++.+.+++++..|++.+.-++..-|+.+-.-....+++.+..++.
T Consensus 800 ~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 800 RVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH
Confidence 22222244444444321111111111245666777888899999999999999998877766555545557888888888
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 005088 302 SCCSESQREAALLLGQFAA 320 (715)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~ 320 (715)
+....++..+-..+-.++.
T Consensus 880 d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 7777777776666666654
No 214
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.09 E-value=0.73 Score=46.24 Aligned_cols=147 Identities=20% Similarity=0.160 Sum_probs=98.8
Q ss_pred ChHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCc-chhH
Q 005088 250 ALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKV 327 (715)
Q Consensus 250 ~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 327 (715)
.++.|+ ..+++.++.+|..++.+|+-.+--+.+.... .++.+...++.++..++..|+.++..+....+ ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344333 6778899999999999999998766544333 46778888877789999999999998865322 1111
Q ss_pred H-------HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhh----ccCChhHHHHHHH
Q 005088 328 H-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLL----DSKNGSLQHNAAF 394 (715)
Q Consensus 328 ~-------~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~ 394 (715)
. .....++..+.+.+.+.+++++..|+..++.|...+ .. ....+..|+-+- ...+..+++.-..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1 122456778888888889999999999999987766 11 022222322222 2234667777777
Q ss_pred HHHhccCCCc
Q 005088 395 ALYGLADNED 404 (715)
Q Consensus 395 ~L~~l~~~~~ 404 (715)
.+-..+....
T Consensus 179 Ffp~y~~s~~ 188 (298)
T PF12719_consen 179 FFPVYASSSP 188 (298)
T ss_pred HHHHHHcCCH
Confidence 7777765544
No 215
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.02 E-value=0.28 Score=46.89 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=85.4
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
.....|+++|.-++ -+|..+..+.....+..++.+|...... .++..++.+|..+..+++.+...|-..+|+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~-------~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPP-------AIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCc-------hHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence 45667889999999 9999999999999999999999654443 888999999999999999999999999999
Q ss_pred HHHHHhhccC--CHHHHHHHHHHHHHHhc
Q 005088 210 PPLVELLEFT--DTKVQRAAAGALRTLAF 236 (715)
Q Consensus 210 ~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 236 (715)
..++.++++. +.+++..++..|.-...
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHHHHHc
Confidence 9999999864 57888888888876664
No 216
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.00 E-value=1.4 Score=44.32 Aligned_cols=181 Identities=21% Similarity=0.189 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHh--cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHH
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~l~~L~ 255 (715)
..++.++..+.++....... ..+.. ...+..+.+.++.+..+-+..|+.++.-++.. .......+.+ ...+.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 77777777777776533322 22211 12456677777776655566777777766643 2233344444 3678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHHh--hhc----------cCChHHHHHHHHHHHHH
Q 005088 256 LMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIG--LLS----------SCCSESQREAALLLGQF 318 (715)
Q Consensus 256 ~ll~~~~--~~v~~~a~~~L~~L~~---~~~~~~~~~~~~g~l~~L~~--ll~----------~~~~~~~~~a~~~L~~l 318 (715)
+.+.+.. ..+|..++.+|+-++. ..++...... ..+..+.. ... .+++.+...|+.+-+-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8888753 4566677777766643 2222211110 11221111 111 11245666666655555
Q ss_pred hcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
...-+.....-.-...++.|..+|.+++..||.+|..+|+-|....
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5444432222222346899999999999999999999998775443
No 217
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.94 E-value=2.1 Score=43.00 Aligned_cols=193 Identities=19% Similarity=0.199 Sum_probs=109.4
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHh--cCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
.+...++.+.+- ....+..++..+.++....-....+.. .-.+..+...++.+.. +=+..
T Consensus 44 ~L~~~Id~l~eK------~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~l 105 (309)
T PF05004_consen 44 KLKEAIDLLTEK------SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQAL 105 (309)
T ss_pred HHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHH
Confidence 344455555433 345789999999988764222222221 2356677777777665 44556
Q ss_pred HHHHHHhhc-C--ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc---cCccchhHHHhcCCc
Q 005088 136 SAFALGLLA-V--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGI 209 (715)
Q Consensus 136 a~~~L~~l~-~--~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~g~i 209 (715)
|+++++-++ . .......+++ ...|.|...+.+.... ...+..++.+|+-++. .++...... ...+
T Consensus 106 A~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~------~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~l 176 (309)
T PF05004_consen 106 AARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSAS------PKARAACLEALAICTFVGGSDEEETEEL--MESL 176 (309)
T ss_pred HHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccc------hHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHH
Confidence 778777777 2 2233333333 4678888888876532 1455566666666553 221111100 0112
Q ss_pred HHHHH--hhc----------cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 210 PPLVE--LLE----------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 210 ~~L~~--ll~----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
..+.. ..+ .+++.+...|+.+-+.|...-+...-.-.-...++.|..+|.+++.+||..|..+|.-|.
T Consensus 177 e~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 177 ESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 21111 111 123567777777766666433432111111346899999999999999999999988874
No 218
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.85 E-value=2.5 Score=41.15 Aligned_cols=204 Identities=13% Similarity=0.121 Sum_probs=140.7
Q ss_pred HHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHH-----hhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 005088 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI-----VQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~~~l~~L~~~L~~~~~~v~~~a~~~L~ 358 (715)
.+.+.++|.+..+++.+...+.+.+..++.+..|+-...-..+... .....+..|+.--.. .+++...+...+.
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3566778999999999999999999999998888864332222211 122334444433111 4777777778888
Q ss_pred HhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc-CCCchhhHHHhhccccccccchhhhhhhhhHHHHH
Q 005088 359 RLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 435 (715)
Q Consensus 359 ~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 435 (715)
.+..+. .+.+....-....-..+..++-.+..-|..+...+. ++......+...+.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~--------------------- 209 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNY--------------------- 209 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhCh---------------------
Confidence 877777 788888888888888888888888888888887774 33322223332220
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhh----hcCCcHHHHHHHhcCCCcchhhhhHHHH
Q 005088 436 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF----IDGGGLELLLGLLGSTNPKQQLDGAVAL 511 (715)
Q Consensus 436 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~----~~~~~i~~L~~ll~~~~~~~~~~aa~~L 511 (715)
..-..+..-.++++.+--+++++...|+.+..+..+..+| .....+..+..++.++...+|..|-..-
T Consensus 210 --------d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvF 281 (342)
T KOG1566|consen 210 --------DNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVF 281 (342)
T ss_pred --------hhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHH
Confidence 1111233556788899999999999999997776655444 3346788999999999999999997765
Q ss_pred HHhhhh
Q 005088 512 FKLANK 517 (715)
Q Consensus 512 ~~L~~~ 517 (715)
.-...+
T Consensus 282 KvfvAn 287 (342)
T KOG1566|consen 282 KVFVAN 287 (342)
T ss_pred HHHhcC
Confidence 444443
No 219
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.76 E-value=0.15 Score=45.32 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=100.2
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhH
Q 005088 250 ALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (715)
Q Consensus 250 ~l~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (715)
.++.++..+. ...+++|..+.-++..+- +. ...-...-+-+.+-..+...+.+-...+..++..+-.+.++...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445555554 357789999988888883 22 22222333344455555555555677788888887666666655
Q ss_pred HH-hhcCChHHHHHHhC--CCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhc-cCChh-HHHHHHHHHHhc
Q 005088 328 HI-VQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYGL 399 (715)
Q Consensus 328 ~~-~~~~~l~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~l 399 (715)
.+ ...|+++.++.++. ..+..++..++.+|..-+... +...+..++++.|-+..+ +++.. ++..|+-+|..+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 54 46788899999998 688889999999888777666 777777789999999994 56566 788888777653
No 220
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.72 E-value=0.24 Score=44.10 Aligned_cols=146 Identities=22% Similarity=0.288 Sum_probs=97.2
Q ss_pred CcHHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 208 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 208 ~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
.+..++..+. ...++++..+.-++..+- +..+....+ -+-+.+-.++...+.+-...++.++..+....++...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445555554 345678888888888774 233333322 1223344445554455677788999999888888877
Q ss_pred HHH-HcCChHHHHhhhc--cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHH-HHHHHHHHHHH
Q 005088 286 EVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-LREMSAFALGR 359 (715)
Q Consensus 286 ~~~-~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~-v~~~a~~~L~~ 359 (715)
.++ ..|+++.++.++. ..+..+...++.+|..-| .+..++..+. ..+++.|-+.++. ++.. ++..|+-+|+.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 776 5788999999998 667788888888887765 4555555454 5677999999954 5555 78888777764
No 221
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.71 E-value=0.044 Score=33.25 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 447 VLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 447 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
++|.+++++.+++++||..|+.+|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999863
No 222
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.70 E-value=0.18 Score=55.66 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=105.9
Q ss_pred cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHH-h-cCCcHHHHHhhccCCHHHHHHHHHHHHH
Q 005088 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-M-EGGIPPLVELLEFTDTKVQRAAAGALRT 233 (715)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (715)
..++|.+++.....+. ..+..-..+|.+...+-|. +.+. + ...+|.|++.|.-+|..++..+..++.-
T Consensus 866 ~~ivP~l~~~~~t~~~--------~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~ 935 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPG--------SQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPM 935 (1030)
T ss_pred HhhHHHHHHHhccCCc--------cchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhH
Confidence 4578888888873332 5566677777777764443 2222 1 2456778888888999999999999888
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhcCCC---HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHH
Q 005088 234 LAFKNDENKNQIVECNALPTLILMLRSED---SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (715)
Q Consensus 234 L~~~~~~~~~~~~~~g~l~~L~~ll~~~~---~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~ 310 (715)
+....+.....-++ -++|.++.+-.+.+ ..||..|+.+|..|....|...-......++..+...|.++.--+|.+
T Consensus 936 ~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen 936 LLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred HHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHH
Confidence 77654444443333 36777777776655 578999999999998755554444445667888999999988889999
Q ss_pred HHHHHHH
Q 005088 311 AALLLGQ 317 (715)
Q Consensus 311 a~~~L~~ 317 (715)
|..+=.+
T Consensus 1015 Av~tR~~ 1021 (1030)
T KOG1967|consen 1015 AVDTRQN 1021 (1030)
T ss_pred HHHHhhh
Confidence 8876444
No 223
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.66 E-value=0.52 Score=48.98 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
.....++.+.+.+. +...+..++..|..++.++.....++...++..|..++.++....++ ++...
T Consensus 82 ~~~a~~i~e~l~~~------~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~--------~~L~~ 147 (713)
T KOG2999|consen 82 SHYAKRIMEILTEG------NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS--------ELLST 147 (713)
T ss_pred hHHHHHHHHHHhCC------CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH--------HHHHH
Confidence 45567778888876 44456679999999999999999999999999999999988763332 77777
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHh
Q 005088 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (715)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 215 (715)
+++++..+-...-.....+...++..+..+.+... .+..+...|+..|-++...+...++.+.+.--+..|+..
T Consensus 148 ~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~------~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~h 221 (713)
T KOG2999|consen 148 SLRAFSELMEHGVVSWESVSNDFVVSMASYVNAKR------EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRH 221 (713)
T ss_pred HHHHHHHHHhhceeeeeecccHHHHHHHHHHhhhh------hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHH
Confidence 78777777622222222233334445555542221 112777889999999988787788888888889999999
Q ss_pred hccCCHHHHHHHHHHHHHHhcCChh
Q 005088 216 LEFTDTKVQRAAAGALRTLAFKNDE 240 (715)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~ 240 (715)
++..+..++..|...+..+....++
T Consensus 222 lq~~n~~i~~~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 222 LQVSNQRIQTCAIALLNALFRKAPD 246 (713)
T ss_pred HHhcchHHHHHHHHHHHHHHhhCCh
Confidence 9999988888888888877764443
No 224
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.57 E-value=9.9 Score=45.18 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=82.2
Q ss_pred cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHH
Q 005088 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIA 369 (715)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~ 369 (715)
.+.+..++..+......+|..|+.+|.++...++... ....+-..+..-+.++...||++|+..++.........+.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 4567888888888889999999999999987665432 2222334555667778899999999999977654422111
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHh
Q 005088 370 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 411 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 411 (715)
+ ....+..-+.+..-.||+.+.++++.+|...++...+.+
T Consensus 892 q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~ 931 (1692)
T KOG1020|consen 892 Q--YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD 931 (1692)
T ss_pred H--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH
Confidence 1 223445555677888999999999999876655544433
No 225
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.42 E-value=0.23 Score=53.31 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=128.1
Q ss_pred HhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005088 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (715)
Q Consensus 204 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (715)
+..+.+|.|+++.+..+..+|..-+.-+-.... .....+.+..+++.+..-+.+.++.+|..++.++..|+..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 455788999999999998888766655555542 333455667789999999999999999999999988864221
Q ss_pred HHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHH
Q 005088 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~ 363 (715)
...+....+..+..+-.+.+..+|.+..-+++.++....... .+.-...++.+.++++-..-|.++..+++.....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 223334455666655556667888888888888765322211 2222334566677777788888888888766554
Q ss_pred HHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 364 ITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 364 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
.-..-+...+++.+.-+.-+++..++..|..++...
T Consensus 478 ~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 478 FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 423333456677777777788888888888877664
No 226
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.33 E-value=0.19 Score=54.03 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=123.3
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhH
Q 005088 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (715)
Q Consensus 248 ~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (715)
.++++.|++++...|..+|...+.-+-+.. +.....+++..+++.+..-+.+.++.++...+..+..++..-...
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 467888999999888888887776666653 233466677888899998888888889988888888876421111
Q ss_pred HHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhh
Q 005088 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 407 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (715)
.+....+..+-.+-.+.+..+|.+...+|+.++.+........-.+..+.+.++++-..-|..+.++++.....-+...
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~ 482 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE 482 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh
Confidence 2222334444444445667788888888888876652222333344556666777777777787777776554322111
Q ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 005088 408 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 473 (715)
Q Consensus 408 ~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 473 (715)
+...+++.++.+.-+++..++..|-.++...
T Consensus 483 -----------------------------------va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 483 -----------------------------------VANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred -----------------------------------hhhhccccccccccCcccchhhHHHHHHHHH
Confidence 1233666777777788888888888877665
No 227
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=2.6 Score=45.55 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=73.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHH
Q 005088 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (715)
Q Consensus 249 g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (715)
|.+..+++...+.+..||..++..|..+...+.+ ....+-.++...+..-+.+..+.||.+|..+|+.+-. ++..-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDE-- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCC--
Confidence 4566677777788999999999999999653333 2333445566667777778889999999999999963 22211
Q ss_pred HhhcCChHHHHHHhCC-CCHHHHHHHHHHHH
Q 005088 329 IVQRGAVRPLIEMLQS-PDVQLREMSAFALG 358 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~ 358 (715)
+..+...+..++++ ++++||+.|+..|.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 12345677777765 78999998765553
No 228
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.23 E-value=0.18 Score=50.64 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=67.8
Q ss_pred EEEEecCeeecchHHHHhhcc--HHHHHhhcCCCCCCCCC-ceecCCCCHHHHHHHHHHHhcCCcccCHHHHHHHHH-HH
Q 005088 550 VTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDAR-DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR-AA 625 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s--~~f~~~~~~~~~e~~~~-~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~-~A 625 (715)
|.+-|+|+.|...+.-|+-.. .||.+++++.|.-.... -.-+-|=+|+.|..+|.|+-||+++++......++. =|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 567899999999999988655 59999998887543332 223346789999999999999999987666555555 89
Q ss_pred HHhChhhHHH
Q 005088 626 DQYLLEGLKR 635 (715)
Q Consensus 626 ~~~~~~~L~~ 635 (715)
.+|++..|..
T Consensus 93 ~fYGl~~llr 102 (465)
T KOG2714|consen 93 MFYGLTPLLR 102 (465)
T ss_pred hhcCcHHHHH
Confidence 9999999876
No 229
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.18 E-value=1.3 Score=47.82 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
.+...++..+..+-..+.+.. .-.|.+..+++...+++..||..+|.+|..+... ......-+-.+....+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D---lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED---LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh---HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHh
Confidence 455555555555543222211 2235666777777888999999999999999852 222333333456677777778
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-cCChHHHHHHHHHHHH
Q 005088 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQ 317 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~ 317 (715)
+..+.||..|+.+|+.+-....+ -+..+...+..+++ +++++||+.|+..+.+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 88999999999999999422111 11335667777776 4578999887765544
No 230
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=0.83 Score=52.12 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=111.9
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
..|.++++.+.+.. +.+++++..|.-+|+.+. -+.+.+. ..+|.|+..+.....+ -++.
T Consensus 920 f~piv~e~c~n~~~--------~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p-------~IRs 979 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--------FSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSP-------RIRS 979 (1251)
T ss_pred HHHHHHHHhcCCCc--------CCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCc-------eeee
Confidence 46777777766544 234599999999999988 5655532 3589999999866543 8888
Q ss_pred HHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCH
Q 005088 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (715)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~ 263 (715)
+++-.++.++...+..- ...-+.|...|.+.++.+|+.|..+|.+|... ..+.-.|.+..+..++.++++
T Consensus 980 N~VvalgDlav~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred cchheccchhhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcH
Confidence 99999999986555432 24557888999999999999999999999862 233346889999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 005088 264 AIHYEAVGVIGNLVHS 279 (715)
Q Consensus 264 ~v~~~a~~~L~~L~~~ 279 (715)
+++.-|=.....|+..
T Consensus 1050 ~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSK 1065 (1251)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9998888888888543
No 231
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=4 Score=42.97 Aligned_cols=152 Identities=17% Similarity=0.143 Sum_probs=100.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
.+-+++.+.++-+|.....++..--.+. ...|++..+++. ..+.+++|++.|+-+|+-+|..+..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 4556777777777776655544222111 124667777777 6677999999999999999876544
Q ss_pred cCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 005088 290 AGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGI 368 (715)
Q Consensus 290 ~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l 368 (715)
.+...+++|. +.++.+|...+.+|+-.|++...+ ..+..|-.++.+...-||+.|+-+++.+.......+
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3555666665 456899999999999888765443 134566667778888999999999988765551111
Q ss_pred --HhcCChHHHHHhhccCC
Q 005088 369 --AHNGGLVPLLKLLDSKN 385 (715)
Q Consensus 369 --~~~~~l~~L~~ll~~~~ 385 (715)
--.++.+.+.+++.+++
T Consensus 657 np~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhHHHHHHHHHHHHhhhh
Confidence 11244555666664443
No 232
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.56 E-value=5.4 Score=40.62 Aligned_cols=163 Identities=16% Similarity=0.135 Sum_probs=116.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhHHHHHHHc--CChHHHHhhhccC-----C--------hHHHHHHHH-
Q 005088 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA--GALQPVIGLLSSC-----C--------SESQREAAL- 313 (715)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--g~l~~L~~ll~~~-----~--------~~~~~~a~~- 313 (715)
++.+.+.|.+....+...+++.|..++. ........+... --.+.+..++... . +.+|.....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888999999999988 665666666653 2345566665321 1 277777766
Q ss_pred HHHHHhcCCcchhHHHhh-cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-------HHHHHhcCChHHHHHhhccCC
Q 005088 314 LLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-------TAGIAHNGGLVPLLKLLDSKN 385 (715)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-------~~~l~~~~~l~~L~~ll~~~~ 385 (715)
++..+..+++..+..+.+ .+.+..+.+-|..+++++....+.+|..-...+ +..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 444454556666655554 567888888888888999989988888543333 566777788888888776666
Q ss_pred h----hHHHHHHHHHHhccCCCchhhHHHhhc
Q 005088 386 G----SLQHNAAFALYGLADNEDNVADFIRVG 413 (715)
Q Consensus 386 ~----~v~~~a~~~L~~l~~~~~~~~~l~~~~ 413 (715)
+ .+...+-..|..+|.++.+.-.+-+.|
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~ 249 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDNG 249 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccccCCCC
Confidence 6 899999999999998876555444443
No 233
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.52 E-value=2.2 Score=45.80 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
.....|+..+.....+-|..... ++..++.++.+.+..||..|+..|..+|.++++....+ ..+|+.+|.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHh
Confidence 78888999999998878876654 45699999999999999999999999998776665544 568999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc---cCChHHHHHHHHHHHH
Q 005088 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQ 317 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~---~~~~~~~~~a~~~L~~ 317 (715)
++++.....+-.+|..|...++.. .+..+...+. ..+..+|..++..|..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 988776666666776665444432 3444444443 4567788887766643
No 234
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.10 E-value=0.67 Score=39.93 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCcccEEEEecCeeecchHHHHhhccHHH-HHhhcCCCC---CCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHH
Q 005088 544 NATLSDVTFLVEGRRFYAHRICLLASSDAF-RAMFDGGYR---EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ 619 (715)
Q Consensus 544 ~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f-~~~~~~~~~---e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~ 619 (715)
.|.-.-|.+.|+|..|-.-|.-|..-+.-| ..++...+. .++..--.+-|-+|..|..+|.|+-+|++-++.-.=.
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ee 96 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEE 96 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhh
Confidence 334456778899999999999998877444 555554321 1111223344668899999999999999988874445
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhc
Q 005088 620 DLLRAADQYLLEGLKRLCEYTIAQD 644 (715)
Q Consensus 620 ~ll~~A~~~~~~~L~~~~~~~l~~~ 644 (715)
.++.=|++|.++.|.+...+.|...
T Consensus 97 GvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHH
Confidence 7899999999999999988777654
No 235
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.02 E-value=0.95 Score=51.66 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=107.6
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcc
Q 005088 250 ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 250 ~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
+.|.++.+.+. .+|+++..|.-+|+.+..-+.+.+.. -++.|+..+. ++++.+|.++.-+++.++..-+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45556666643 47899999999999996655554433 4788999998 67899999999999998865555
Q ss_pred hhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
..... -+.|...|++.++.+|+.|..+|.+|...+ .+--.|-+..+..++.+++++|+..|-.....|+.
T Consensus 995 lie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 44333 367888899999999999999999998765 22234778888999999999999888877766653
No 236
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.96 E-value=2.3 Score=42.72 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=108.1
Q ss_pred CCcHHHH-HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HH
Q 005088 207 GGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IK 284 (715)
Q Consensus 207 g~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~ 284 (715)
+.+..|+ ..+++.++.+|..++.+|+-.+.-+..... ..++.+...+..+++.++..|+.++..+...... ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 677888999999999999988864442221 2466777888778999999999999988643221 11
Q ss_pred HH-------HHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHH-HHhC---CCCHHHHHHH
Q 005088 285 KE-------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI-EMLQ---SPDVQLREMS 353 (715)
Q Consensus 285 ~~-------~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~---~~~~~v~~~a 353 (715)
.. .....+++.+.+.+.+.+++++..++..++.|.-.+.-.- ...++..|+ .+.. .++..+|..-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 1124577888889988899999999999998764332211 012233332 2332 2456777766
Q ss_pred HHHHHHhHHHH--HHHHHhcCChHHHHHhhc
Q 005088 354 AFALGRLAQVI--TAGIAHNGGLVPLLKLLD 382 (715)
Q Consensus 354 ~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~ 382 (715)
...+-..+... .+..+...+++.+..+.+
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 66776666655 455555666666666553
No 237
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.89 E-value=0.63 Score=34.81 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcC
Q 005088 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~ 157 (715)
...++|+++++++++.-...+.+.++++.++++.+..+. ..+|--|..+|+-++.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-----------~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-----------LSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-----------cchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 568999999999988777777788999999999987655 2899999999999998888877766654
No 238
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.79 E-value=11 Score=39.13 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=98.4
Q ss_pred HHHHHHHH-HHHHHhccCccchhHHHhcCCcHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 005088 180 SVIRRAAD-AITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (715)
Q Consensus 180 ~~~~~a~~-~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 257 (715)
+-+..|+. ...-+|.++....+... ...+..+++.|.+ .++..+..|+++|..++...+..-..-.+ -++..++..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence 44455555 33344443333332222 1234566777766 67888999999999999744332111111 133444444
Q ss_pred hcCCCHHHHHHHHH-HHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH
Q 005088 258 LRSEDSAIHYEAVG-VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (715)
Q Consensus 258 l~~~~~~v~~~a~~-~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 336 (715)
-.+.++++...|.. ++.-++.+.|..+ +..+..++...+...-..++..+..++..-+......+-.++.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 55555555444443 4445555555443 22344444445555555556566666643222222223357889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhHHH
Q 005088 337 PLIEMLQSPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 337 ~L~~~L~~~~~~v~~~a~~~L~~l~~~ 363 (715)
.+++...+.+..||+.|+.+|-.+...
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 999999999999999999999877643
No 239
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.77 E-value=5.6 Score=41.00 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=103.4
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh--cC
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EG 207 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~g 207 (715)
+=+..|+.-|..+. .+......-....++..+++.|.+..+. ..+..|+++|..+|...+. + +.+ .-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~-------~~k~laLrvL~~ml~~Q~~-~--l~DstE~ 371 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDE-------IIKKLALRVLREMLTNQPA-R--LFDSTEI 371 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhh-------HHHHHHHHHHHHHHHhchH-h--hhchHHH
Confidence 44455655444444 4422222222233567788888875443 7888999999999974432 1 221 12
Q ss_pred CcHHHHHhhccCCHHHHHHHHH-HHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAG-ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~-~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
++..++..-.+.++++...|.. ++..++...|..+ +..+..++...|......++..+..++..-+.---.
T Consensus 372 ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 372 AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHH
Confidence 3445555555666655555544 4555555445432 344455555566666666777777776543322222
Q ss_pred HHHcCChHHHHhhhccCChHHHHHHHHHHHHHh
Q 005088 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (715)
.+-..+.|.+++.-.+.+..+|+.+..+|..+.
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 233678899999999999999999999998875
No 240
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.75 E-value=1.8 Score=47.03 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=93.4
Q ss_pred hhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccCCCchhhH
Q 005088 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVAD 408 (715)
Q Consensus 330 ~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (715)
+...++|.|..-+++.+..+++.++..+..++..--...+..-++|.+-.+- ++.+..++.+++.++..+...
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~------ 459 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR------ 459 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH------
Confidence 3456678888888888888998888888887765533333444455554443 556677777777777776511
Q ss_pred HHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCc
Q 005088 409 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 488 (715)
Q Consensus 409 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 488 (715)
+-... .-..+..+....+..+|.+.....++..++.........+....+
T Consensus 460 lD~~~------------------------------v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~V 509 (700)
T KOG2137|consen 460 LDKAA------------------------------VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENV 509 (700)
T ss_pred HHHHH------------------------------hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhh
Confidence 11111 111234455556677999999999999988766655445556789
Q ss_pred HHHHHHHhcCCCcchhhhh
Q 005088 489 LELLLGLLGSTNPKQQLDG 507 (715)
Q Consensus 489 i~~L~~ll~~~~~~~~~~a 507 (715)
+|.++.+...+.-.+..++
T Consensus 510 lPlli~ls~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 510 LPLLIPLSVAPSLNGEQYN 528 (700)
T ss_pred hhhhhhhhhcccccHHHHH
Confidence 9999988887765555544
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.69 E-value=12 Score=39.76 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=79.5
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHH
Q 005088 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (715)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~ 308 (715)
..+.+...++|+... ++ .|.+..+++.+.+.+..||..++..|.-+.....+ ....+-.|.+..|..-+-+..+.+|
T Consensus 73 ~f~~Y~~~~dpeg~~-~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 73 RFFEYDMPDDPEGEE-LV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVR 149 (885)
T ss_pred HHHHhcCCCChhhhH-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 333344444555422 22 25677788888889999999999999999644333 3455567777778877778889999
Q ss_pred HHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHH
Q 005088 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAF 355 (715)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~ 355 (715)
.+|..+|..+-.. ..+-. ......|...+++ ++.+||+.|+.
T Consensus 150 ~eAv~~L~~~Qe~-~~nee----n~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 150 REAVKVLCYYQEM-ELNEE----NRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHHhc-cCChH----HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998532 22111 1123466666655 67788887643
No 242
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=92.69 E-value=5.5 Score=40.23 Aligned_cols=173 Identities=12% Similarity=0.024 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
....-..+++.|..... ...+..++.++.-++.+......+.....+..|+.+-+-+..+. .-|...+..|..
T Consensus 43 r~eL~e~i~~Vle~~~p-----~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~--sl~~v~d~~vi~ 115 (532)
T KOG4464|consen 43 RKELGERIFEVLENGEP-----LTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNEN--SLPTVADMHVIM 115 (532)
T ss_pred HHHHHHHHHHHHhcCCC-----chhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccC--CCCcccchHHHH
Confidence 33344556666766532 33566777788877776544333333334555555544332211 123334458999
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchh-HHHhcCCcHHH
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-RVRMEGGIPPL 212 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~g~i~~L 212 (715)
.++++|.|+. .++..+........+..+++.+.......-+ .++...-+..|.-+..-.+..|. .+...+|++.+
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~---~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~l 192 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFP---KDSSIFDLRLLFLLTALETDHRSQLIAELLGLELL 192 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCC---ccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHH
Confidence 9999999999 8899999888888888888777544321111 13333344444444433444444 45567899999
Q ss_pred HHhhccC---------C------HHHHHHHHHHHHHHhcC
Q 005088 213 VELLEFT---------D------TKVQRAAAGALRTLAFK 237 (715)
Q Consensus 213 ~~ll~~~---------~------~~v~~~a~~~L~~L~~~ 237 (715)
...+.+. + .+....++.++.|++.+
T Consensus 193 t~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 193 TNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred HHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 9988642 1 23445677778888754
No 243
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.66 E-value=2.8 Score=43.92 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=116.6
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (715)
...+.+++.++++ .-+..++..|..++.++.....+....++..|.+++.+...-. ..++...+
T Consensus 85 a~~i~e~l~~~~~------------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~----~~~~L~~~ 148 (713)
T KOG2999|consen 85 AKRIMEILTEGNN------------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCM----SSELLSTS 148 (713)
T ss_pred HHHHHHHHhCCCc------------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccch----HHHHHHHH
Confidence 4467788888887 7777799999999999999999999999999999998876421 12666667
Q ss_pred HHHHHHHhccCccchhHHHhcCCcHHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCH
Q 005088 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (715)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~ 263 (715)
+.++..+-.+.-.....+ ...++.....+.+ ..+..+...|+..|-++..+++..+..+.+.--++.|+..++..+.
T Consensus 149 L~af~elmehgvvsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~ 227 (713)
T KOG2999|consen 149 LRAFSELMEHGVVSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ 227 (713)
T ss_pred HHHHHHHHhhceeeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch
Confidence 777666654333222111 1223333333332 3345677899999999998888888888888889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCh
Q 005088 264 AIHYEAVGVIGNLVHSSP 281 (715)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~ 281 (715)
.++..|...+..+....+
T Consensus 228 ~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 228 RIQTCAIALLNALFRKAP 245 (713)
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 998888888877765443
No 244
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.66 E-value=1.6 Score=40.16 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=74.0
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhc----------------CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDN----------------GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~----------------~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (715)
.....++..|+|++..++....+++. ..+..|+..+......... ..+-..+.+.+|.|++.
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n--~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYN--KKDNYDYLASVLANLSQ 87 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCC--CCcchhHHHHHHHHhcC
Confidence 55667899999999666555544432 2466677766652111000 02666789999999997
Q ss_pred cCccchhHHHhcC--C--cHHHHHhhccCCHHHHHHHHHHHHHHhcCChh
Q 005088 195 ENSSIKTRVRMEG--G--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240 (715)
Q Consensus 195 ~~~~~~~~~~~~g--~--i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 240 (715)
.++.|..+.+.. . +..|+.+..+.+..-|.-++.+|.|+|.+.+.
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~ 136 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS 136 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence 777888887643 3 67788888888777788999999999974433
No 245
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=92.37 E-value=0.13 Score=50.77 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=109.7
Q ss_pred ccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCH--HHHHHHHHHH
Q 005088 548 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQDLLRAA 625 (715)
Q Consensus 548 ~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~ll~~A 625 (715)
-|..+......+++|+.+|...|+.|..+....-..+..+.+.+..++.+.+..+.+++|.. +.-.+ ....-++.+.
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 34455566788999999999999999888765522233445677788889999999999988 33222 2234566666
Q ss_pred HHhChhhHHHHHHHHHHh-cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhc
Q 005088 626 DQYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 689 (715)
Q Consensus 626 ~~~~~~~L~~~~~~~l~~-~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l 689 (715)
..|.++..+..|...+.. .++..+++..+..+..|+...|...+...+...|....+++.+...
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 788999999888877766 4688899999999999999999999999999999999987655444
No 246
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.27 E-value=1.3 Score=47.39 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=86.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhc
Q 005088 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (715)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 332 (715)
.++...+ ++...+.-|...|......-|+.... ++..++++..+.+..+|..|...|..+|..+++....+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 3444444 47889999999999998888886555 57789999999999999999999999998766665544
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhc---cCChhHHHHHHHHHHh
Q 005088 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLD---SKNGSLQHNAAFALYG 398 (715)
Q Consensus 333 ~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~ 398 (715)
...|.++|.+.++.-...+-.+|..+...+. .+.+..+...+. +.+..+|..++..|..
T Consensus 98 --aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 98 --ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-----KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp --HHHHHHHTT---HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred --HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 4789999999888877777777877765551 122333444443 5677889888877743
No 247
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.84 Score=47.68 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcCC--Cc-cchhhhcCCcHHHHHHHhcCCCcc
Q 005088 448 LNHLLYLMRVAEKGVQRRVALALAHLCSP--DD-QRTIFIDGGGLELLLGLLGSTNPK 502 (715)
Q Consensus 448 l~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~-~~~~~~~~~~i~~L~~ll~~~~~~ 502 (715)
...|-.++.+++.-||..|+.+++.+... ++ +.+. .+.+..+.+++.+++++
T Consensus 623 ~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v---~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 623 TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV---KRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH---HHHHHHHHHHHhhhhHh
Confidence 44555677788888999999998887322 22 2221 25566677777665544
No 248
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.11 E-value=10 Score=40.81 Aligned_cols=277 Identities=12% Similarity=0.093 Sum_probs=139.6
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
..++.+-..-.+.+.. +...+.+..++..+..+......+-...+ ..+...+.....+ +.-..-
T Consensus 24 ~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~-----------~d~~~~ 87 (464)
T PF11864_consen 24 SSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND-----------DDFDLR 87 (464)
T ss_pred hHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc-----------hhHHHH
Confidence 3344443333444333 23456788888888887764222100110 1222333333221 223345
Q ss_pred HHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccC----------------CCcc---hhhhHHHHHHHHHHHHHhccC
Q 005088 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMD----------------SNCS---RAVNSVIRRAADAITNLAHEN 196 (715)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~----------------~~~~---~~~~~~~~~a~~~L~~L~~~~ 196 (715)
+.+|..|+ ++.+. ..++.+..+.|...+..... .... .............+.++...+
T Consensus 88 l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn 165 (464)
T PF11864_consen 88 LEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFN 165 (464)
T ss_pred HHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcC
Confidence 56666667 55444 22566777777777743220 0000 001123344455555555433
Q ss_pred ccchhHHHhcCCcHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005088 197 SSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (715)
Q Consensus 197 ~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~ 275 (715)
...-..-.-.+.+..++.++.. .++.....++.++-.+..-..-....+. .++..|..... ..+....+-.++.|
T Consensus 166 ~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~--~~~l~~~~w~~m~n 241 (464)
T PF11864_consen 166 FNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVN--SVSLCKPSWRTMRN 241 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhc--ccccchhHHHHHHH
Confidence 3222212223445555555433 3344445555555555431111111111 12344444432 22667778888999
Q ss_pred hhcCChhHHHHHHHcCChHHHHhhhcc------CChHHHHHHHHHHHHHhcCCcchhHHHhhc---CChHHHHHHhCCCC
Q 005088 276 LVHSSPNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPD 346 (715)
Q Consensus 276 L~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~~L~~~~ 346 (715)
|+..... .. .+..|...|.+ .+..+.+.|...+..+..+..+....-+.. -+++.+...++.++
T Consensus 242 L~~S~~g--~~-----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 242 LLKSHLG--HS-----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHcCccH--HH-----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence 9754322 11 35667777732 235667788888888876653333322222 26788888888888
Q ss_pred HHHHHHHHHHHHHhHH
Q 005088 347 VQLREMSAFALGRLAQ 362 (715)
Q Consensus 347 ~~v~~~a~~~L~~l~~ 362 (715)
+.+-...+..+.++..
T Consensus 315 ~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 315 PRVDYEILLLINRLLD 330 (464)
T ss_pred CeehHHHHHHHHHHHh
Confidence 8777777777777763
No 249
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.02 E-value=9.5 Score=39.38 Aligned_cols=212 Identities=17% Similarity=0.120 Sum_probs=110.7
Q ss_pred hhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCChhhH--------
Q 005088 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENK-------- 242 (715)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~~-------- 242 (715)
...+.++..++..+...+...++.-..+. ...+.....+|.. ....+...++..|..++. .+..+
T Consensus 107 ~~l~kvK~~i~~~~~ly~~kY~e~f~~~l-~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~ 184 (370)
T PF08506_consen 107 GLLEKVKAWICENLNLYAEKYEEEFEPFL-PTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAE-SPHHKNLFENKPH 184 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHT-SHHHHTTT-SHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc-chhHHHHhCCHHH
Confidence 34456777777777766654443222111 2344444455532 124566777787777764 23222
Q ss_pred -HHHHhCCChHHHH------Hhhc-------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-
Q 005088 243 -NQIVECNALPTLI------LMLR-------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS- 301 (715)
Q Consensus 243 -~~~~~~g~l~~L~------~ll~-------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~- 301 (715)
..+++.=++|.+. ++.+ ++...-|..|+..|..|+...+.....+ +...+..++.
T Consensus 185 L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~ 260 (370)
T PF08506_consen 185 LQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQ 260 (370)
T ss_dssp HHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Confidence 1122211122111 1111 1224567889999999975433322222 1223333333
Q ss_pred -----cCChHHHHHHHHHHHHHhcCCcch------------hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 302 -----SCCSESQREAALLLGQFAATDSDC------------KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 302 -----~~~~~~~~~a~~~L~~l~~~~~~~------------~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
..++.-+..|+..++.++...... ...+....++|-|. --.+..|-++..|++.+...-..-
T Consensus 261 y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l 339 (370)
T PF08506_consen 261 YASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL 339 (370)
T ss_dssp HHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS
T ss_pred HhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC
Confidence 245677777888889888644221 12233334445444 112356778888888877664433
Q ss_pred -HHHHHhcCChHHHHHhhccCChhHHHHHHHHH
Q 005088 365 -TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 396 (715)
Q Consensus 365 -~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 396 (715)
...+. ++++.+++.|.+++.-|...|+.++
T Consensus 340 ~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 340 PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33333 4889999999999999999998775
No 250
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=18 Score=37.79 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=77.8
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
.++..|++.|++.+ .-|+-...... -.+..++.-|-+.... ++...++.+|..+...-....-..+-.++.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~-------~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNE-------EVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 89999999999999 43543332222 2355555555554443 899999998888874222111111111233
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~--~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
-.+..+..+.+++++.++...+..|+.-. ...+..+.+ .+....++-.+.++++.+.. ||+.....+
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence 44666778888999998888877776411 112222222 12223333445566765544 555555554
No 251
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.00 E-value=14 Score=41.76 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=106.0
Q ss_pred HHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH--HHHHHhcCChH--HHHHhhcc-CChh
Q 005088 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI--TAGIAHNGGLV--PLLKLLDS-KNGS 387 (715)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~--~L~~ll~~-~~~~ 387 (715)
+++++....++....+.+.+++..+...++. ....++..+.+.+.|++... .........+. .+..++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8899998899999999999999999999986 67789999999999999877 22222222222 33344433 3447
Q ss_pred HHHHHHHHHHhccCCCch-hhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHH-HHHHHhhh-hhhHHH
Q 005088 388 LQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH-LLYLMRVA-EKGVQR 464 (715)
Q Consensus 388 v~~~a~~~L~~l~~~~~~-~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~ll~~~-~~~v~~ 464 (715)
....|+.+|..+..+.+. ...-...-+-+.+.+ +.......-........... +.+++..+ .+..+.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e----------~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~l 643 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVE----------AISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQL 643 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHH----------HhhccCccceeehhhhhcchhHHHHhcccCCCchHH
Confidence 888999999988654322 000000000000000 00000000000011111222 44455544 678999
Q ss_pred HHHHHHHhhcCC-CccchhhhcCCcHHHHHHHhcC
Q 005088 465 RVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS 498 (715)
Q Consensus 465 ~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~ 498 (715)
.|++++.++... ++..+...+.++++.+.++-..
T Consensus 644 Wal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 644 WALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred HHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 999999999654 4577767788888887765543
No 252
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.91 E-value=4.2 Score=43.88 Aligned_cols=207 Identities=16% Similarity=0.140 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
+++..|.-+|..+.--+.+ + -...+|.|+..+. +++|.+|.+|.-.|+-++.......+. .-..|.+-|
T Consensus 911 ~lq~aA~l~L~klMClS~~----f-c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL 980 (1128)
T COG5098 911 ELQVAAYLSLYKLMCLSFE----F-CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL 980 (1128)
T ss_pred HHHHHHHHHHHHHHHHhHH----H-HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh
Confidence 7888887788776532222 1 1346788888886 889999999988888776543322222 235577778
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 338 (715)
.+.+..|++.|+.++..|.-. ..+.-.|-++.+..+|.+++.++..-|-..+..++..+.. +-.|+++.+
T Consensus 981 ~De~~~V~rtclmti~fLila-----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt-----~yn~fidif 1050 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLILA-----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT-----MYNGFIDIF 1050 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHHc-----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc-----hhhhhHHHH
Confidence 888999999999999998543 2223367889999999999988888777788888753322 223444333
Q ss_pred HHHhCC----CCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhh
Q 005088 339 IEMLQS----PDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 412 (715)
Q Consensus 339 ~~~L~~----~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 412 (715)
..+.+ ++.. -+...+.|..+.... ++++.+ ....++++.....--...+.++.||-...++...+.+.
T Consensus 1051 -s~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E----~L~~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll~~ 1124 (1128)
T COG5098 1051 -STLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE----SLFLRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLLNR 1124 (1128)
T ss_pred -HHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHhcCCccccchhhHhhc
Confidence 33332 2222 223445555555444 333333 12334444433222234555666664444444444443
No 253
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=3 Score=34.28 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=65.5
Q ss_pred EecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcc--------------------
Q 005088 553 LVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD-------------------- 612 (715)
Q Consensus 553 ~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-------------------- 612 (715)
..+|..|.+.+.+ +-+|-..+.|+... .+.. -.+..+++...+|..+++|+-...-.
T Consensus 8 s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wd 84 (158)
T COG5201 8 SIDGEIFRVDENI-AERSILIKNMLCDS-TACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWD 84 (158)
T ss_pred ecCCcEEEehHHH-HHHHHHHHHHhccc-cccC-CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHH
Confidence 3567888888765 55888888877642 1221 24677899999999999999654221
Q ss_pred -----cCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC
Q 005088 613 -----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 645 (715)
Q Consensus 613 -----~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i 645 (715)
++-+++.++.-+|+++.++-|.+.|...+...+
T Consensus 85 r~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 85 RFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 123567789999999999999999887766554
No 254
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.56 E-value=1 Score=41.66 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=64.7
Q ss_pred CChhhHHHHHhcCChHHHHHHHccccCCCc-chhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHH
Q 005088 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (715)
Q Consensus 145 ~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 223 (715)
........+++.||+..|+.+|........ ..........++.||..+..........+...+++..|+..+.+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 344566777888999999999976433211 1122367788999999998644444555555788999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005088 224 QRAAAGALRTLA 235 (715)
Q Consensus 224 ~~~a~~~L~~L~ 235 (715)
+..++.+|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 255
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.54 E-value=17 Score=34.92 Aligned_cols=134 Identities=20% Similarity=0.122 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHHHHHHhcCh-hhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHH
Q 005088 75 ADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (715)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (715)
.++..+...+..|..++.+. .+... ++..|..+.+.+.. +.+.-+.+.+..+. .++..-
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH--
Confidence 46778999999999999865 43333 35566677766666 55556777777777 443321
Q ss_pred HHhcCChHHHHHHH--ccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh-ccCCHHHHHHHHH
Q 005088 153 IVDNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAG 229 (715)
Q Consensus 153 i~~~~~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~ 229 (715)
+.+..++..+ +...........++........+..+|...++.. ...++.+..++ ++.++.++..++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHH
Confidence 2233333331 1011111111224666666778999998777622 23567888888 7888899999999
Q ss_pred HHHHHhc
Q 005088 230 ALRTLAF 236 (715)
Q Consensus 230 ~L~~L~~ 236 (715)
+|..|+.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999994
No 256
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.49 E-value=26 Score=42.06 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=100.1
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHh--cCChHHHHHhhccCChhHHHHHHHHHHhcc-CCCchhhH
Q 005088 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVAD 408 (715)
Q Consensus 332 ~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 408 (715)
.+++|.|-..|.+.+..+|..|...++.+.......+.+ ......++.-+.+.+..||..++....++- .++.....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 467899999999999999999999999988777333332 234455666668889999999998888873 34443333
Q ss_pred HHhhcccc-ccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC-----Cccchh
Q 005088 409 FIRVGGVQ-KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-----DDQRTI 482 (715)
Q Consensus 409 l~~~~~i~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~ 482 (715)
....-.+. ...+........-......+..........++..+...+++....||..|..-|..+-.. ..+.+.
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~ 417 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKE 417 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 32222111 111111111111000011112222222222677777788888999999999988877432 222222
Q ss_pred hhc-CCcHH-HHHHHhcCCCcchh
Q 005088 483 FID-GGGLE-LLLGLLGSTNPKQQ 504 (715)
Q Consensus 483 ~~~-~~~i~-~L~~ll~~~~~~~~ 504 (715)
+.. -..+| .|+.+++..+.+.+
T Consensus 418 ~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 418 ITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred ccccccccchhHHhhHhhccccHH
Confidence 222 13343 56677766655555
No 257
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.31 E-value=3.3 Score=46.93 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhc-CCCCcccccCCCccchHHH
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQ-APPTSEADRNLKPFEHEVE 133 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~-~~~~~~~~~~~~~~~~~v~ 133 (715)
..+..+.+.+.+...+.++ +...+.+|+..+.....++.....-...|.+-.++.... +.+. .+.
T Consensus 247 ~~di~~ki~~~l~t~~~s~--~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~------------~v~ 312 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSK--KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANI------------NVV 312 (815)
T ss_pred hhhhhhhcChHHHHhhhcc--chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcch------------hHH
Confidence 3445555655565544433 666788999988888776441111112344455554443 3333 788
Q ss_pred hhHHHHHHhhc-CC-hhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHH
Q 005088 134 KGSAFALGLLA-VK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (715)
Q Consensus 134 ~~a~~~L~~l~-~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~ 211 (715)
..++.+|..|+ .. +..+. ...+..+.++.-+..... .+++.+..++-..+.... .....+.
T Consensus 313 ~~aa~~l~~ia~~lr~~~~~--~~~~v~p~lld~lkekk~--------~l~d~l~~~~d~~~ns~~-------l~~~~~~ 375 (815)
T KOG1820|consen 313 MLAAQILELIAKKLRPLFRK--YAKNVFPSLLDRLKEKKS--------ELRDALLKALDAILNSTP-------LSKMSEA 375 (815)
T ss_pred HHHHHHHHHHHHhcchhhHH--HHHhhcchHHHHhhhccH--------HHHHHHHHHHHHHHhccc-------HHHHHHH
Confidence 88999999999 33 33322 334678888888887665 666666666666653111 1234678
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005088 212 LVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (715)
+...+++.++.++..+...+.......+ .....-.-.+.++.++....+.+.+||..+..+++.+..
T Consensus 376 I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 376 ILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 8889999999999887777776665333 111111223578888888889999999999999988843
No 258
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=8.9 Score=43.55 Aligned_cols=260 Identities=22% Similarity=0.156 Sum_probs=152.9
Q ss_pred HHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHH
Q 005088 84 THVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH 161 (715)
Q Consensus 84 ~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~ 161 (715)
..+|..+.. +.++...+.++.++..+++++-+. +-|...++.+..|. .+|.. +.+.-+-.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind--------------ehRSslLrivscLitvdpkq----vhhqelma 724 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--------------EHRSSLLRIVSCLITVDPKQ----VHHQELMA 724 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--------------HHHHHHHHHHHHHhccCccc----ccHHHHHH
Confidence 456777777 578888899999999998888332 45666777777766 55442 11123556
Q ss_pred HHHHHccccCC----CcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc----------CCHHHHHHH
Q 005088 162 LVNLLKRHMDS----NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAA 227 (715)
Q Consensus 162 L~~lL~~~~~~----~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~v~~~a 227 (715)
++..|++..-. .....-.++....+++++.+..-+...+..+.+.++...|...|.. ++.-+...-
T Consensus 725 lVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyikl 804 (2799)
T KOG1788|consen 725 LVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKL 804 (2799)
T ss_pred HHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHH
Confidence 77777763221 1111223667778888888887777888889999999888877631 111111111
Q ss_pred HHHHH---HHhc-CChhhHHHHHhCCChHHHHHhhc--------------------------CCCHHHHHHHHHHHHHhh
Q 005088 228 AGALR---TLAF-KNDENKNQIVECNALPTLILMLR--------------------------SEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 228 ~~~L~---~L~~-~~~~~~~~~~~~g~l~~L~~ll~--------------------------~~~~~v~~~a~~~L~~L~ 277 (715)
...|. .++. .++.|+..+...-.-+.+..+|. .++-.--..||..+-.+-
T Consensus 805 fkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfele 884 (2799)
T KOG1788|consen 805 FKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELE 884 (2799)
T ss_pred HHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcc
Confidence 22222 1221 24444333221111122222221 111111223333333331
Q ss_pred ----c-----C-ChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh---CC
Q 005088 278 ----H-----S-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QS 344 (715)
Q Consensus 278 ----~-----~-~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L---~~ 344 (715)
. + .-...+.+...|++..++..+-...+..+.+-+..+..++.-++.+.......|.+..|++++ .+
T Consensus 885 dnifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypfls 964 (2799)
T KOG1788|consen 885 DNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLS 964 (2799)
T ss_pred cceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhc
Confidence 0 0 002346677889999999998888899999999999999988898888888889888888775 23
Q ss_pred CCHHHHHHHHHHHHHhH
Q 005088 345 PDVQLREMSAFALGRLA 361 (715)
Q Consensus 345 ~~~~v~~~a~~~L~~l~ 361 (715)
++...-..+..++..|+
T Consensus 965 gsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 965 GSSPFLSHALKIVEMLG 981 (2799)
T ss_pred CCchHhhccHHHHHHHh
Confidence 33334444444444443
No 259
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.06 E-value=8.8 Score=43.65 Aligned_cols=182 Identities=12% Similarity=0.077 Sum_probs=121.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
+.+-.-+.++++.-+..|+..+........ ........|.+-.+++.. .+.+..+...++.+|..|+...... ..-.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHH
Confidence 444455557778888888888888775322 111111123344444433 3457888899999999997665443 2223
Q ss_pred HcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 005088 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGI 368 (715)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l 368 (715)
..+.++.+++.+.+....++..+..++-.++...+ -....+.++.++++.+|.++..+...+...........
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 45678889999988888887777776666653211 13457888899999999999887777766655441111
Q ss_pred ----HhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 369 ----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 369 ----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
.-.+.++.++....+.+..||.+|..++.-+.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 12345667777778899999999999998874
No 260
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=89.08 E-value=1.8 Score=39.73 Aligned_cols=103 Identities=11% Similarity=0.030 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhc--CC--hHHHHhhhcCCCCcccccCCCccch
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG--GA--VPALVKHLQAPPTSEADRNLKPFEH 130 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~--v~~L~~lL~~~~~~~~~~~~~~~~~ 130 (715)
....+..++..+.................+..|.|++..++.|+.+... +. +..|+.++++.+.
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~------------ 117 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV------------ 117 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcH------------
Confidence 3456777777777733322222334678899999999999999999863 45 7888888888755
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHh---cCChHHHHHHHccc
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVD---NGALSHLVNLLKRH 169 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~---~~~l~~L~~lL~~~ 169 (715)
.-|..++.++.|+|.+.+....+.. .+++|.|+--|..+
T Consensus 118 iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 118 IRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred HHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 6677899999999955555555554 35666666666543
No 261
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.03 E-value=4.6 Score=37.13 Aligned_cols=150 Identities=13% Similarity=0.127 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcC
Q 005088 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~ 157 (715)
...|+..|.-++++|+.+..++++..--.+..+|...+.. ++++ -+|..++.+++.|. +++.....+....
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~------~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN------SKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC------Cccc-eeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 5667777788888999998888887655666666544331 1121 67888999999999 6777888888999
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchh------HHHh-cCCcHHHH-HhhccCCHHHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRM-EGGIPPLV-ELLEFTDTKVQRAAAG 229 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~~~-~g~i~~L~-~ll~~~~~~v~~~a~~ 229 (715)
++|..+++++..+. --+..++.++..+..++...+- .+.. ...+..++ ++...+...+.+.+++
T Consensus 190 ivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR 261 (315)
T COG5209 190 IVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR 261 (315)
T ss_pred HHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999988764 3444555555555543322111 0110 11222222 2233455667777777
Q ss_pred HHHHHhcCChhhHHHH
Q 005088 230 ALRTLAFKNDENKNQI 245 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~ 245 (715)
+-..|+. ++..+..+
T Consensus 262 cYlRLsd-~p~aR~lL 276 (315)
T COG5209 262 CYLRLSD-KPHARALL 276 (315)
T ss_pred HheeecC-CHhHHHHH
Confidence 7777773 55555443
No 262
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.79 E-value=44 Score=37.27 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=91.3
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHh----ccCccchhHHHhcCCcHHHHHhhc----cCCHHHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA----HENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAG 229 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~ 229 (715)
.+..+..++++...... ..+...|+-.++++. ...+... .......++.+...|. ..+..-+...+.
T Consensus 394 ~l~~l~~l~~~~~~~~~----~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 394 ILKALFELAESPEVQKQ----PYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred HHHHHHHHhcCcccccc----HHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 36677777776533221 145555555555554 3222211 1112235556655553 345555677888
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc--CC
Q 005088 230 ALRTLAFKNDENKNQIVECNALPTLILMLR-S--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CC 304 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~--~~ 304 (715)
+|+|+.. + ..++.+..++. + .+..+|..|+++|..++...+.. +-+.++.++.+ .+
T Consensus 469 aLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~ 529 (574)
T smart00638 469 ALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEP 529 (574)
T ss_pred hhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCC
Confidence 8888874 2 23455555554 2 35689999999999987554443 23446666654 35
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHH
Q 005088 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMS 353 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a 353 (715)
+++|..|+.+|... +|.. ..+..+...+.. ++..|+...
T Consensus 530 ~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 530 PEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred hHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence 78888777776653 2221 234555656544 556665443
No 263
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.12 E-value=18 Score=40.76 Aligned_cols=197 Identities=17% Similarity=0.141 Sum_probs=106.6
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCcHHHHHhhcc----CCHHHHHHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALR 232 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~ 232 (715)
++..+.+++....- --..+...|..+.... .+.. ..+..+..++++ .++.++..|+-+++
T Consensus 396 av~~i~~~I~~~~~---------~~~ea~~~l~~l~~~~~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL---------TDDEAAQLLASLPFHVRRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHHHHHHTT-S----------HHHHHHHHHHHHHT-----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---------CHHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence 35666777766432 1133556666665433 2222 234456666653 35677888887777
Q ss_pred HHhcCChhh---------HHHHHhCCChHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhh
Q 005088 233 TLAFKNDEN---------KNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (715)
Q Consensus 233 ~L~~~~~~~---------~~~~~~~g~l~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 299 (715)
.|....-.. ........+++.+...+. ..+.+-+..++.+|+|+-. +. .++.+..+
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~---------~i~~l~~~ 529 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE---------SIPVLLPY 529 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTT
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch---------hhHHHHhH
Confidence 777421111 011122345666666555 3567888889999999932 22 56777777
Q ss_pred hccC---ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHHHHHHHhcCCh
Q 005088 300 LSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITAGIAHNGGL 374 (715)
Q Consensus 300 l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l 374 (715)
+... +..+|..|+++|..++...+.. +.+.|+.++.+ .++++|.+|..+|...- . ....+
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~--P-----~~~~l 594 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRCN--P-----SPSVL 594 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------HHHH
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhcC--C-----CHHHH
Confidence 7765 5788899999999886543322 24667777744 57889988877765431 1 01223
Q ss_pred HHHHHhh-ccCChhHHHHHHHH
Q 005088 375 VPLLKLL-DSKNGSLQHNAAFA 395 (715)
Q Consensus 375 ~~L~~ll-~~~~~~v~~~a~~~ 395 (715)
..+...+ .+++.+|.......
T Consensus 595 ~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 595 QRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHh
Confidence 3444455 44556665544443
No 264
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.66 E-value=13 Score=41.87 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=106.7
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
++..+.+++..... . -..+...|..+. ....... ..+..+..+++....... ..+..
T Consensus 396 av~~i~~~I~~~~~------------~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~----~~l~~ 453 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL------------T-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNS----PYLRE 453 (618)
T ss_dssp HHHHHHHHHHTT-S--------------HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-----HHHHH
T ss_pred HHHHHHHHHHcCCC------------C-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCC----hhHHH
Confidence 56677788877544 1 123555555555 2111111 235556666654321100 15556
Q ss_pred HHHHHHHHHhc----cC-----ccchhHHHhcCCcHHHHHhhc----cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 005088 184 RAADAITNLAH----EN-----SSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 250 (715)
Q Consensus 184 ~a~~~L~~L~~----~~-----~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 250 (715)
.|+-.++.+.. .. ............++.+...+. ..+..-+..++.+|+|+.. + ..
T Consensus 454 ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~ 522 (618)
T PF01347_consen 454 TALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ES 522 (618)
T ss_dssp HHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GG
T ss_pred HHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hh
Confidence 66666666552 21 000111122345566666665 3566778889999999974 2 35
Q ss_pred hHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--ChHHHHHHHHHHHHHhcCCcch
Q 005088 251 LPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDC 325 (715)
Q Consensus 251 l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~ 325 (715)
++.|..++... +..+|..|+++|..++...+.. +.+.++.++.+. +.++|..|..+|... +|..
T Consensus 523 i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~ 591 (618)
T PF01347_consen 523 IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP 591 (618)
T ss_dssp HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H
T ss_pred hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH
Confidence 77777777765 6789999999999886665543 244566676653 477888777766653 2221
Q ss_pred hHHHhhcCChHHHHHHhCC-CCHHHHHHHHHH
Q 005088 326 KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFA 356 (715)
Q Consensus 326 ~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~ 356 (715)
..+..+...+.. ++..|....-..
T Consensus 592 -------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 592 -------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 235566666654 566666544433
No 265
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.66 E-value=1.5 Score=34.74 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=55.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
...+..+.++.+-+|..++..|+.|..... .......+++..+...++++++-|-..|+.+|..|+...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 345666778888899999999999997544 12222245778888899999999999999999999876554
No 266
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.62 E-value=1.4 Score=33.66 Aligned_cols=50 Identities=32% Similarity=0.393 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCc
Q 005088 613 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHA 662 (715)
Q Consensus 613 ~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i---~~~~~~~~~~~a~~~~~ 662 (715)
++...+.+++.+|++++++.|.+.|...+...+ +++.+..++.+...+..
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence 467789999999999999999999998887765 55556666666655543
No 267
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.52 E-value=10 Score=34.49 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHH------H------Hh-CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 223 VQRAAAGALRTLAFKNDENKNQ------I------VE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~------~------~~-~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
+|..|+.+|..++...+ .+.. + .. ..-...+.-++.|+++.+|..|+.+|..|..+....-...-+
T Consensus 2 vR~~Al~~L~al~k~~~-~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTD-KRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcC-CceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 56777777777775411 1110 0 01 122344555677889999999999999997765443322222
Q ss_pred cC----C---------------hHHHHhhhccC-ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHH----HHhCCC
Q 005088 290 AG----A---------------LQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI----EMLQSP 345 (715)
Q Consensus 290 ~g----~---------------l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~----~~L~~~ 345 (715)
.+ . -..|+..|+.+ +..+....+.++..+....|..+.. .|+++.++ ..+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcC
Confidence 11 1 12333333333 4566677777888887766655432 34444433 344567
Q ss_pred CHHHHHHHHHHHHHhH
Q 005088 346 DVQLREMSAFALGRLA 361 (715)
Q Consensus 346 ~~~v~~~a~~~L~~l~ 361 (715)
|+.++..++.+++.+.
T Consensus 158 d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 158 DPNVRVAALSCLGALL 173 (182)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7777777777776654
No 268
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.16 E-value=40 Score=36.33 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred hHHHHHHHHhh------hhhhHHHHHHHHHHhhcCCC--ccchhhhcCC--cHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 447 VLNHLLYLMRV------AEKGVQRRVALALAHLCSPD--DQRTIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 447 ~l~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
++..|..+|.+ .+..+.+.|...+..+.... +....+.-.- .++.+...++.+++.+-......+.++..
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 44556666622 24566778888888886555 3332222223 67888888888888887777777777773
No 269
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=87.05 E-value=4 Score=36.42 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=48.8
Q ss_pred HHHHHhhhhHHHHHHHHhhhhh-hHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhh
Q 005088 439 LEEKIHGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 515 (715)
Q Consensus 439 ~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~ 515 (715)
.+......++..|+..|+++.- .-...+..++.++......+..-.-...+|.++..+.......++..-..|..|.
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455566677888888888743 3344566677777544332222233467888999888766677777666666553
No 270
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=6.9 Score=38.14 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=92.7
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNG 372 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~ 372 (715)
+...+..|.+.++.....++..+..++...++...... +.++-.+++-+++....|-+.|+.++..+.......+.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44456667777888888888888888764443322222 334566677778888999999999999998777333332
Q ss_pred ChHHHHHhh----ccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhH
Q 005088 373 GLVPLLKLL----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 448 (715)
Q Consensus 373 ~l~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (715)
.++.++..| ...+.-|+..|-.+|..+..+... ..++
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------------------------------------~~~L 207 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------------------------------------QKLL 207 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------------------------------------HHHH
Confidence 333433333 234566888888888887654321 2245
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhc
Q 005088 449 NHLLYLMRVAEKGVQRRVALALAHLC 474 (715)
Q Consensus 449 ~~L~~ll~~~~~~v~~~a~~aL~~l~ 474 (715)
+.|+..+...++.++..++.+..+..
T Consensus 208 ~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 208 RKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHhhhchhhhhhhhccccccc
Confidence 66777788888888888877766653
No 271
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=86.92 E-value=17 Score=39.91 Aligned_cols=135 Identities=18% Similarity=0.184 Sum_probs=91.6
Q ss_pred HhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChh
Q 005088 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 204 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
+...++|.|...+++.+..++..++..+-.++..-+ -..+..-++|.+..+. ...+..++..++.|++.+..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---- 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---- 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----
Confidence 345677888888888999999999999998885222 2344445677777764 34578999999999999962
Q ss_pred HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCC
Q 005088 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~ 346 (715)
......-...+..+....+..++.+......+..++....... ..+..+.++|.++.+...+.
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2222222233445556666778888888888777776533332 45556778888888876654
No 272
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.87 E-value=13 Score=34.35 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHh
Q 005088 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKL 380 (715)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~l 380 (715)
.|+..|..++ ..|+.+..+++..+--.+...|.. ....+|..++++++.|..++ .+.+....++|.++++
T Consensus 119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 3445555555 467777777777665455555532 34568899999999999888 5667788999999999
Q ss_pred hccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHH-Hhhhh
Q 005088 381 LDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL-MRVAE 459 (715)
Q Consensus 381 l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l-l~~~~ 459 (715)
+..++..-+.-|+.++..+..++.+...++..- +. ...+ ..++..++.- ...+.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~--eR------------------FyAv-----~~vln~mv~qlVs~~~ 252 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTF--ER------------------FYAV-----NLVLNSMVSQLVSLGS 252 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHH--HH------------------HHHH-----HHHHHHHHHHHhhccc
Confidence 999988888899999888876665554444310 00 0000 1122222222 23345
Q ss_pred hhHHHHHHHHHHhhcCCCccchhh
Q 005088 460 KGVQRRVALALAHLCSPDDQRTIF 483 (715)
Q Consensus 460 ~~v~~~a~~aL~~l~~~~~~~~~~ 483 (715)
......+.++-..++..+..|..+
T Consensus 253 ~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 253 TRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred hhHHHHHHHHheeecCCHhHHHHH
Confidence 566667788888888887777665
No 273
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.76 E-value=3.7 Score=36.91 Aligned_cols=116 Identities=21% Similarity=0.129 Sum_probs=74.7
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhc--CChHHHHHhhcc-CChhHHHHHHHHHHhccCCCchhhH
Q 005088 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHN--GGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVAD 408 (715)
Q Consensus 333 ~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~--~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (715)
.....+..+|+++++.-|-.++..+...+..+ .+.+.+. ..+..++..++. ....+...++.+|..+...-.+...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34567888889989998988888888888776 4444333 235667777755 4567788999999988654444444
Q ss_pred HHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q 005088 409 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 476 (715)
Q Consensus 409 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 476 (715)
+.+..+.+.+ .++++.+++++.+ ..+...++.+|..+...
T Consensus 105 l~Rei~tp~l--------------------------~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIATPNL--------------------------PKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhhccH--------------------------HHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 4433332222 2245566666654 45666777777777543
No 274
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.60 E-value=4.7 Score=37.12 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=59.0
Q ss_pred hhHHHHHHHcCChHHHHhhhcc---------CChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHH
Q 005088 281 PNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (715)
Q Consensus 281 ~~~~~~~~~~g~l~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~ 351 (715)
..-.+.+++.||+..|+.+|.. .+......++.++..+..........+...+++..|...|.+++..++.
T Consensus 97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 3456777788999999988853 2346778889999998754333334444578899999999999999999
Q ss_pred HHHHHHHHhH
Q 005088 352 MSAFALGRLA 361 (715)
Q Consensus 352 ~a~~~L~~l~ 361 (715)
.++..|..++
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 275
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.20 E-value=5.5 Score=44.89 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=103.5
Q ss_pred HHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc--HHHHHh
Q 005088 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--PPLVEL 215 (715)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i--~~L~~l 215 (715)
+|+++. .+++.++.+.+.++...+...++..+.. ++...+++.+.+++...+. +..+.....+ ..+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-------~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-------ELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-------hHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHH
Confidence 777888 8999999999999999999999987543 8999999999999953321 1111111111 233334
Q ss_pred hccCC-HHHHHHHHHHHHHHhcCChhh-----H----HHHHh--------------CCChHH-HHHhhcC-CCHHHHHHH
Q 005088 216 LEFTD-TKVQRAAAGALRTLAFKNDEN-----K----NQIVE--------------CNALPT-LILMLRS-EDSAIHYEA 269 (715)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~-----~----~~~~~--------------~g~l~~-L~~ll~~-~~~~v~~~a 269 (715)
+..-+ .+....++.+|+.+..+.+.. + ..+.+ ...+.. +.+++.. ..+..+.+|
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWa 645 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWA 645 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHH
Confidence 44333 377788888888887642211 0 11110 111222 4444443 467889999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHhhhc
Q 005088 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (715)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 301 (715)
++++.++...+++.+..+.+.|+++.+...-.
T Consensus 646 l~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 646 LWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 99999999998888888888998887766544
No 276
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.20 E-value=38 Score=35.32 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=88.1
Q ss_pred HHHhhHHHHHHhhcCC----hhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc
Q 005088 131 EVEKGSAFALGLLAVK----PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~----~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (715)
+=+..|+-...+++.+ ..+++.+++.-+.+.+-+++...+.+.+. ++.-.+..++.+|..+|+. ++....--.-
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dc-pd~Vy~~i~itvLacFC~~-pElAsh~~~v 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDC-PDDVYLQISITVLACFCRV-PELASHEEMV 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCC-cHHHHHHHHHHHHHHHhCC-hhhccCHHHH
Confidence 6677888888888832 34566678877888888888776543332 2245666778889999973 3322111112
Q ss_pred CCcHHHHHhhccC-CH------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC
Q 005088 207 GGIPPLVELLEFT-DT------KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (715)
Q Consensus 207 g~i~~L~~ll~~~-~~------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 261 (715)
..||.|..++... ++ .+...+-.+|..++. .+.....++..|+++.+.++-.-+
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCC
Confidence 5788888888632 22 367888889988886 577788888999999999876544
No 277
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.00 E-value=6.1 Score=41.89 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=71.5
Q ss_pred cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc--CChhH
Q 005088 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH--SSPNI 283 (715)
Q Consensus 206 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~~ 283 (715)
.|.+..+++.+.+++..|+..++.+|+.++. .-...+...-.|.+..|.+-+-+..+.||..|+.+|+.+-. .++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3666777888888999999999999999884 33333344445677778877778899999999999999843 22222
Q ss_pred HHHHHHcCChHHHHhhhc-cCChHHHHHHHHH
Q 005088 284 KKEVLAAGALQPVIGLLS-SCCSESQREAALL 314 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~ 314 (715)
.....|..+++ +++.++|+.|+.-
T Consensus 169 -------~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred -------HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 12345666665 4567888776543
No 278
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.24 E-value=0.75 Score=42.90 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHH
Q 005088 387 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRR 465 (715)
Q Consensus 387 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~ 465 (715)
.-|..|+.+|+.|+-.+.|...+...+-...+. .++..|++++... ++-.|+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE--------------------------~l~~~L~r~l~~~e~~v~REf 192 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLE--------------------------RLFHTLVRLLGMREDQVCREF 192 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHH--------------------------HHHHHHHHHhccccchhHHHH
Confidence 458899999999998887777666655433322 2556777888776 7889999
Q ss_pred HHHHHHhhcCCCc--cchhhhcCCcHHHHHHHhcCCCcch
Q 005088 466 VALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQ 503 (715)
Q Consensus 466 a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~ 503 (715)
|.-.|.+|+..++ ++.+-.+.+.+..|+..+++.....
T Consensus 193 AvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 193 AVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 9999999988876 5566667789999999998754443
No 279
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.14 E-value=37 Score=32.60 Aligned_cols=124 Identities=23% Similarity=0.192 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh--
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-- 257 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l-- 257 (715)
+++...+..|..++.++..+. .-++..|..+...+......-+.+.+..+-..++..- +.+..++..
T Consensus 16 ~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~ 84 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLI 84 (234)
T ss_pred HHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHH
Confidence 888899999999997551222 2234567777777766666666677777765333221 233333333
Q ss_pred h------c--CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhh-ccCChHHHHHHHHHHHHHh
Q 005088 258 L------R--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFA 319 (715)
Q Consensus 258 l------~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~~l~ 319 (715)
+ . +...+.......++..++...++... ..++.+..++ .+.++.++..++.++..+|
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1 1 12335555556788888877776332 3577788888 6777888888888999988
No 280
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.59 E-value=16 Score=39.86 Aligned_cols=143 Identities=18% Similarity=0.143 Sum_probs=90.4
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhc-CCcch----hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAA-TDSDC----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---- 364 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~----~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---- 364 (715)
|.|..-|+..+..++.+|+..+.++-- .+++. ...+++ +-...|.++|+++-|.||..|...++.+....
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 455666677788999999998888643 23333 222332 34577889999999999999998888876554
Q ss_pred HHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHH
Q 005088 365 TAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 443 (715)
Q Consensus 365 ~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (715)
...++ ...+..+..-+ .+....||......|-.+..++.....+-.
T Consensus 256 P~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~-------------------------------- 302 (1005)
T KOG1949|consen 256 PPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ-------------------------------- 302 (1005)
T ss_pred CHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--------------------------------
Confidence 11111 11222222222 455668888888888887766643222111
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 005088 444 HGRVLNHLLYLMRVAEKGVQRRVALALAHL 473 (715)
Q Consensus 444 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 473 (715)
++++|-..|.+....||.++...|..+
T Consensus 303 ---~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 303 ---LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred ---HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 345555667777777777777776666
No 281
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=84.58 E-value=50 Score=33.67 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=110.1
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhc-CChhhHHHHHh-CC-ChHHHHHhhcCC-----C--------HHHHHHHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVE-CN-ALPTLILMLRSE-----D--------SAIHYEAVGV 272 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~-~g-~l~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (715)
++.+.+.|.+....+...++..|..++. +.......+.. -+ -.+.+.+++... + +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999997 44444444443 22 235566666321 1 2788888876
Q ss_pred HHHhh-cCChhHHHHHHH-cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCc----chhHHHhhcCChHHHHHHhCCCC
Q 005088 273 IGNLV-HSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 346 (715)
Q Consensus 273 L~~L~-~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~l~~L~~~L~~~~ 346 (715)
+..+. ..++..+..++. .+.+..+..-|..++.++....+.++..-.-.++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 66654 455666666665 5678888888888889999999998886433332 34455666677888888777766
Q ss_pred H----HHHHHHHHHHHHhHHHH
Q 005088 347 V----QLREMSAFALGRLAQVI 364 (715)
Q Consensus 347 ~----~v~~~a~~~L~~l~~~~ 364 (715)
+ .+++.+-..|..++...
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 6 88888888888888765
No 282
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=84.07 E-value=10 Score=33.87 Aligned_cols=146 Identities=14% Similarity=0.078 Sum_probs=77.8
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhh-cCCCCcccccCCCccchHHHhhH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHL-QAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL-~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
-|.|++.|...++.+ .++.++.+++++|+.+.. ||-..+.+....- ..- ..... ......
T Consensus 8 yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~------------~~~~~~ 69 (160)
T PF11865_consen 8 YPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSND------------ESTDIS 69 (160)
T ss_pred hHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccc------------cchhhH
Confidence 456666666665554 457799999999999988 6543332221111 000 00000 111111
Q ss_pred HHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHh
Q 005088 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (715)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 215 (715)
. ...... ..++.-.. -++..|++.|++..-. .-...++.++.++... ...+-.-.-...+|.++..
T Consensus 70 l-~~~~~~~~~ee~y~~----vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~ 136 (160)
T PF11865_consen 70 L-PMMGISPSSEEYYPT----VVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRV 136 (160)
T ss_pred H-hhccCCCchHHHHHH----HHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHH
Confidence 1 111222 33333333 3478888888877543 4444566666666532 1111122223577888888
Q ss_pred hccCCHHHHHHHHHHHHHHh
Q 005088 216 LEFTDTKVQRAAAGALRTLA 235 (715)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~ 235 (715)
++..++..++....-|..|.
T Consensus 137 i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 137 IRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 88776677777666666554
No 283
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.00 E-value=56 Score=36.70 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCc---------------cch-HHHhhHHHHHHh
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP---------------FEH-EVEKGSAFALGL 142 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~---------------~~~-~v~~~a~~~L~~ 142 (715)
....|+..|.+.+..+.+...+...+++..+.+...-++-..+.++... .|. .-|..|+..+..
T Consensus 309 Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 309 LVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 5667788888888777777666666666666655443332211111000 011 235567777888
Q ss_pred hcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc----CCcHH----HHH
Q 005088 143 LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME----GGIPP----LVE 214 (715)
Q Consensus 143 l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~----g~i~~----L~~ 214 (715)
|+..-+....-+-.+-+.. +|.....++. ..|.-...+...+..++......+.-+... +.+.. +..
T Consensus 389 L~~~fe~~vt~v~~~~v~~---~l~~y~~nPS--~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp 463 (960)
T KOG1992|consen 389 LCKNFEGQVTGVFSSEVQR---LLDQYSKNPS--GNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILP 463 (960)
T ss_pred HHHHhcchhHHHHHHHHHH---HHHHhccCCC--ccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhH
Confidence 8833233222121122222 3332221111 124555667777777765332221111110 11111 111
Q ss_pred hhcc----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005088 215 LLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 215 ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (715)
-|.+ +.|-++..++.-+... .+.-.+..+.. .++.++..|+.++.-+-..|+.++-.+-.
T Consensus 464 ~L~s~~vn~~pilka~aIKy~~~F--R~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 464 DLLSPNVNEFPILKADAIKYIYTF--RNQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HhccCccccccchhhcccceeeee--cccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 1222 2233444333322211 12233333433 58889999999999898899998887743
No 284
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.65 E-value=32 Score=37.63 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHH
Q 005088 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (715)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 339 (715)
.+++++..|.-+|..+-.-+.+.+. .-+|.++..+. +++|.+|.+|.-.++.++......... .-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 5788999988888887443333332 35788999988 677999999988888876433322222 235677
Q ss_pred HHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC
Q 005088 340 EMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 340 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 403 (715)
+-|.+.+..|++.|..++..|...+ .+--.|-++.+..+|.+.+.++...|-..+..++..+
T Consensus 978 rrL~De~~~V~rtclmti~fLilag--q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG--QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc--ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 7888889999999999999887655 1112356777888899999999998888888887543
No 285
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.63 E-value=25 Score=32.04 Aligned_cols=114 Identities=24% Similarity=0.237 Sum_probs=73.1
Q ss_pred cHHHH-HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC-----C--------------hHHHHHhhcCC-CHHHHH
Q 005088 209 IPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-----A--------------LPTLILMLRSE-DSAIHY 267 (715)
Q Consensus 209 i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g-----~--------------l~~L~~ll~~~-~~~v~~ 267 (715)
-+.|+ -++.++++.+|..|+.+|..|-.+....-....+.+ + -..|+..+..+ +..+..
T Consensus 41 ~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 41 TPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred CcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 34444 455788999999999999999875432211111111 1 12344445554 677888
Q ss_pred HHHHHHHHhhcCChhHHHHH-HHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCC
Q 005088 268 EAVGVIGNLVHSSPNIKKEV-LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (715)
Q Consensus 268 ~a~~~L~~L~~~~~~~~~~~-~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (715)
..++++..+....|..+-.. +-..++..+..++.+.|.+++..++.+++.+.+..
T Consensus 121 q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 99999999987776543211 11223445555667788999999999999887643
No 286
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.98 E-value=2.5 Score=33.48 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 447 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 447 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
.+...+..+.++.+.+|..++..|.++..... .......+.+..+...+.++++-+-..|..+|..|+...+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 35566777899999999999999999977666 2222334667788889999999999999999999998653
No 287
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.95 E-value=9.8 Score=37.17 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=90.7
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
+...+..|.+.++.....++..+..|+.-.++....... .++-.+++-+++....|...|+.+++.+...-......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445666777788888888888888888644433322222 24556667777788899999999999997543333222
Q ss_pred HcCChHHHHhhh-c---cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 289 AAGALQPVIGLL-S---SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 289 ~~g~l~~L~~ll-~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
-++.++..| . ..+--++..|-.+|..+..+-.. ..+++.|+..+.+.++.++..++.+..+..
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 223333322 2 23345777788888887642211 234688888888899999988887776554
No 288
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.73 E-value=66 Score=33.66 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhcC----hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccch-HHHhhHHHHHHhhcCChhhHHHH
Q 005088 79 AAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH-EVEKGSAFALGLLAVKPEHQQLI 153 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~----~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~-~v~~~a~~~L~~l~~~~~~~~~i 153 (715)
.+..|+.....+.++ ...++.+.+.-+.+.+-++|...+.+ ..-.+ -.+.-++..|.-.|..|+....-
T Consensus 27 e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p------~dcpd~Vy~~i~itvLacFC~~pElAsh~ 100 (698)
T KOG2611|consen 27 ERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGP------GDCPDDVYLQISITVLACFCRVPELASHE 100 (698)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCC------CCCcHHHHHHHHHHHHHHHhCChhhccCH
Confidence 477788888888773 34566688888899999999776542 11122 34445666677777777654322
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHH-HHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK-VQRAAAGALR 232 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-v~~~a~~~L~ 232 (715)
--.+.||.++.++....+.. ......+.+.+-.+|..++.+ +.....++..|+++.+.++-.-++-. -..-++.++.
T Consensus 101 ~~v~~IP~llev~~~~~d~d-~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vll 178 (698)
T KOG2611|consen 101 EMVSRIPLLLEVMSKGIDTD-YEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLL 178 (698)
T ss_pred HHHHhhhHHHHHHHhcCCCc-hhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHH
Confidence 22246999999998765431 112236888999999999875 66666788899999998766433321 1223333333
Q ss_pred HHhcCC---hhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 233 TLAFKN---DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 233 ~L~~~~---~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
-+..+- ++....+.. .+..+..=+...+...+...|..|..+.
T Consensus 179 l~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 179 LLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333211 121122211 1333333333456677788888887553
No 289
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.36 E-value=30 Score=38.56 Aligned_cols=143 Identities=20% Similarity=0.128 Sum_probs=72.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhc--CChhHHHHHHHcC---ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcch
Q 005088 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAG---ALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (715)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~g---~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (715)
+-.|+++++.-+.+-......-+.. .. .-.-..+.+...| .+..+.+++....... .+++.++..+...-..-
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~P 390 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYP 390 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcC
Confidence 4456666666555544444443332 10 0011223333344 4556666666654221 12223232222110000
Q ss_pred hHHHhhcCChHHHHHHhCC----CCHHHHHHHHHHHHHhHHHHHH------HHHhcCChHHHHHhh----ccCChhHHHH
Q 005088 326 KVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQVITA------GIAHNGGLVPLLKLL----DSKNGSLQHN 391 (715)
Q Consensus 326 ~~~~~~~~~l~~L~~~L~~----~~~~v~~~a~~~L~~l~~~~~~------~l~~~~~l~~L~~ll----~~~~~~v~~~ 391 (715)
....+..+..++.+ ..+.++..|..++++++...+. ...-...++.+.+.+ ...+..-+..
T Consensus 391 -----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 465 (574)
T smart00638 391 -----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQL 465 (574)
T ss_pred -----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheee
Confidence 01235677777764 4677899999999999875511 111233555555555 2345556778
Q ss_pred HHHHHHhcc
Q 005088 392 AAFALYGLA 400 (715)
Q Consensus 392 a~~~L~~l~ 400 (715)
.+.+|+|+.
T Consensus 466 ~LkaLGN~g 474 (574)
T smart00638 466 YLKALGNAG 474 (574)
T ss_pred HHHhhhccC
Confidence 888888875
No 290
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.16 E-value=10 Score=37.35 Aligned_cols=148 Identities=21% Similarity=0.198 Sum_probs=86.2
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcC--ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcC-
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG- 207 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g- 207 (715)
+-+.-++..++-++-++.....+...+ ....+..++...... .....+-.+++++.|+.. ++..+..+....
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~ 152 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS----SPPANQMLALRLLANLFS-HPPGRQLLLSHFD 152 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT----SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC----CcHHHHHHHHHHHHHhhC-CCccHHHHHhccc
Confidence 445667777777776666655554443 245555555554322 113778889999999876 555555554432
Q ss_pred -CcHHHHHhhccC----CHHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHhh-cC-CCHHHHHHHHHHHHHhhcC
Q 005088 208 -GIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILML-RS-EDSAIHYEAVGVIGNLVHS 279 (715)
Q Consensus 208 -~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~l~~L~~ll-~~-~~~~v~~~a~~~L~~L~~~ 279 (715)
.+...+..+... +..++..++..+.|++......+ ..-.....+..+...+ .. .++++...++-+|++|...
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 233333333333 67899999999999985211111 0000111345555533 22 5899999999999999865
Q ss_pred ChhH
Q 005088 280 SPNI 283 (715)
Q Consensus 280 ~~~~ 283 (715)
.+..
T Consensus 233 ~~~~ 236 (268)
T PF08324_consen 233 SDSA 236 (268)
T ss_dssp SHHH
T ss_pred ChhH
Confidence 5443
No 291
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.81 E-value=2 Score=40.12 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=60.0
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcC-------ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccch-hH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNG-------ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TR 202 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~-------~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~ 202 (715)
.-|..|+.+|.+|+-.+.+.+.+...+ .+..|+++|....+. ..++.|+..|.+||..++... ..
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~-------v~REfAvvlL~~La~~~~~~~r~i 211 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQ-------VCREFAVVLLSNLAQGDEAAARAI 211 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHhcccHHHHHHH
Confidence 568899999999994444444444333 345566666665553 899999999999998777655 45
Q ss_pred HHhcCCcHHHHHhhccCC
Q 005088 203 VRMEGGIPPLVELLEFTD 220 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~~~ 220 (715)
..+.+.+..|+.++++.+
T Consensus 212 A~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 212 AMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHhhchHHHHHHHHHHHH
Confidence 556788999999997644
No 292
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=25 Score=38.38 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=102.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhc-CChhh----HHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAF-KNDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~----~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
|.|.+-|+-++..|+.+|+..+.++-- .+|.. .+.+.+ .-...+.++|+++-+.||..|..-+..+...-=+..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 344555667889999999999988763 12222 222333 235678899999999999988877776642110110
Q ss_pred HHHHHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHH
Q 005088 285 KEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~ 363 (715)
..-+-..++..+++-+. +...++|......|..+.. ++.....+ .-++|.|-..|.++...||-++...|..+-..
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 00011112222332222 2345777777777777653 33332221 12456666777888899999998888776444
Q ss_pred HHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHh
Q 005088 364 ITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 398 (715)
Q Consensus 364 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 398 (715)
....++.---.+.++.-|...+..+...-+..|.+
T Consensus 333 ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~ 367 (1005)
T KOG1949|consen 333 RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFN 367 (1005)
T ss_pred hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHH
Confidence 32223332333444444444444443333333333
No 293
>PRK09169 hypothetical protein; Validated
Probab=80.97 E-value=1.8e+02 Score=37.38 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHh
Q 005088 346 DVQLREMSAFALGRL 360 (715)
Q Consensus 346 ~~~v~~~a~~~L~~l 360 (715)
++.-..+++++|+.+
T Consensus 413 naQ~vANaLnALsKW 427 (2316)
T PRK09169 413 NAQGVANALNALSKW 427 (2316)
T ss_pred ChHHHHHHHHHHhcC
Confidence 344444566666544
No 294
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=79.64 E-value=1.5e+02 Score=37.69 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=139.1
Q ss_pred HHHhhHHHHHHhhc-C---ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc
Q 005088 131 EVEKGSAFALGLLA-V---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~---~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (715)
.+...|+..|..++ . .++....-++...+.++..++...... ++++..+.|+.++...... .+ .
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~-------eVrE~ILeCv~qmI~s~~~---nI--k 1219 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV-------EIRELIIRCVSQMVLSRVN---NV--K 1219 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHh---hh--h
Confidence 67788888888887 2 222222223445678888878765543 9999999999998753221 12 2
Q ss_pred CCcHHHHHhhc----cCCHHHHHHHHHHHHHHhcCChhh-----HHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 005088 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNL 276 (715)
Q Consensus 207 g~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~-----~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L 276 (715)
.|++.+..++. +.++.+...|-.++..+..+.-.. ...+. .++..|..+.... +.++-..|+..|+++
T Consensus 1220 SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1220 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 47788877775 456778888888887776421100 11222 3455566665543 456666777777755
Q ss_pred hcCC---h------------------------hHHH-----HHHHcCChHHHH---hhhccCChHHHHHHHHHHHHHhcC
Q 005088 277 VHSS---P------------------------NIKK-----EVLAAGALQPVI---GLLSSCCSESQREAALLLGQFAAT 321 (715)
Q Consensus 277 ~~~~---~------------------------~~~~-----~~~~~g~l~~L~---~ll~~~~~~~~~~a~~~L~~l~~~ 321 (715)
+..- + +... .......++.|. .+..+...+||..|+.+|..+...
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 2100 0 0000 000011233333 334567799999999988776532
Q ss_pred C-----cchhHHHhhcCChHHHHHHhCCC-----------------------CHHHHHHHHHHHHHhHHHHHHHH-----
Q 005088 322 D-----SDCKVHIVQRGAVRPLIEMLQSP-----------------------DVQLREMSAFALGRLAQVITAGI----- 368 (715)
Q Consensus 322 ~-----~~~~~~~~~~~~l~~L~~~L~~~-----------------------~~~v~~~a~~~L~~l~~~~~~~l----- 368 (715)
. ++....+. .+++-++++.++.. +..+.+.+..+|.+++.-....+
T Consensus 1378 yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~ 1456 (1780)
T PLN03076 1378 HGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP 1456 (1780)
T ss_pred hhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22223333 24455555554310 01133444455555544331111
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 369 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 369 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
.-.+.+..|..++...+..+...+..+|.+|.
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 11234444444556677888888888888774
No 295
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.83 E-value=68 Score=31.36 Aligned_cols=220 Identities=14% Similarity=0.038 Sum_probs=118.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc--CChHHHHHHHHHHHHHhcCCcchhHHHh
Q 005088 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV 330 (715)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (715)
.|-..|.++++.+|..++..|+.+...-+.. .....-+..|++.+.+ .+......++..+..+.....-... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~-~- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE-S- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh-h-
Confidence 4556788899999999999999886544421 1112223444444432 2445555556666666532211111 1
Q ss_pred hcCChHHHHHHhC--CCCHHHHHHHHHHHHHhHHHHHHHHH--hcCChHHHHHhh-ccCChhHHHHHHHHHHhccCC---
Q 005088 331 QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITAGIA--HNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADN--- 402 (715)
Q Consensus 331 ~~~~l~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~l~--~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~--- 402 (715)
...++..+.+-.. ......|..+...+..+..+....+. ..+.+..+++.+ ..++|.-...+...+..+...
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 1112233333222 23456788888888888777644443 235667777777 467888777777777766433
Q ss_pred CchhhHHHhh--cccccccc--chhhhhhhhhHHHHHH---HHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 403 EDNVADFIRV--GGVQKLQD--GEFIVQATKDCVAKTL---KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 403 ~~~~~~l~~~--~~i~~L~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
.+....+.+. -..|.--. .+....-..+-+...+ -..........++.|++-|.++.+.++.-++.+|...+.
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 2222333321 11111000 0000000011111111 111223456788999999999999999999999988765
Q ss_pred CC
Q 005088 476 PD 477 (715)
Q Consensus 476 ~~ 477 (715)
..
T Consensus 238 ~y 239 (262)
T PF14500_consen 238 NY 239 (262)
T ss_pred HC
Confidence 43
No 296
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.48 E-value=18 Score=32.40 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=70.8
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHhhcCC-CHHHHHHHHHHHHHhh---cCCh
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSE-DSAIHYEAVGVIGNLV---HSSP 281 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~---~~~~ 281 (715)
.+..+..+++++++.-+..++..+...+..++ .+.+.+. ..+..++.+++.+ +..+...++.+|..|. .+.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44567888888888888888888888875321 3344332 3567888888875 5567888888888774 3445
Q ss_pred hHHHHHHHc---CChHHHHhhhccCChHHHHHHHHHHHHHhcCCc
Q 005088 282 NIKKEVLAA---GALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (715)
Q Consensus 282 ~~~~~~~~~---g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (715)
+..+++... ++++.+++++++ ......++.+|..+....+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 555555433 344555555543 3455566666666654333
No 297
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.47 E-value=1.6e+02 Score=36.84 Aligned_cols=189 Identities=16% Similarity=0.094 Sum_probs=96.0
Q ss_pred ccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHH------HHHHHh
Q 005088 122 DRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD------AITNLA 193 (715)
Q Consensus 122 ~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~------~L~~L~ 193 (715)
+..+.|....+...+....+.+. .++..+..+.+. .+..+.-.+.... ..++..+.. ++.+++
T Consensus 790 ~p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~--~~esi~~sk~~r~-------qsV~~~a~t~~al~s~lk~l~ 860 (2067)
T KOG1822|consen 790 VPYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEH--FPESIKQSKSARQ-------QSVQVNAVTWQALLSALKYLA 860 (2067)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHH--HHHHhhhhccchh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677777888888877 455555554433 1222222222111 144444433 344444
Q ss_pred ccCc--cchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHH
Q 005088 194 HENS--SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAV 270 (715)
Q Consensus 194 ~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~ 270 (715)
.... ..-...+..-....++..+..+++..+-.+..++..|+...+.. ..+. +..+.++.-+.+ .|+-.|.--.
T Consensus 861 e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~a--~~aq~~fdklas~~d~i~R~ghs 937 (2067)
T KOG1822|consen 861 EFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFVA--SLAQNSFDKLASARDPITRTGHS 937 (2067)
T ss_pred hcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chHH--HHHHHHHHHHHhcCCcHHHHHHH
Confidence 3221 11111111223344555666788888888889999888632221 1111 123444444444 4554454444
Q ss_pred HHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC-hHHHHHHHHHHHHHhcCC
Q 005088 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATD 322 (715)
Q Consensus 271 ~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~ 322 (715)
-+++.+-.........-.....+..+..+.++.. +.++..++.++..+....
T Consensus 938 lalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 938 LALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred HHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCC
Confidence 5555553322221111112234667777777765 599999999988887543
No 298
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.26 E-value=19 Score=35.45 Aligned_cols=153 Identities=17% Similarity=0.097 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcC--ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhc
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~ 156 (715)
.+.=++..++-++.++.....+...+ ....+..++...... ..+..+..+++++.|+..++..+..+...
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~ml~lR~l~NlF~~~~~~~~~~~~ 150 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS--------SPPANQMLALRLLANLFSHPPGRQLLLSH 150 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT--------SSHHHHHHHHHHHHHHTTSCCCHHHHHCT
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC--------CcHHHHHHHHHHHHHhhCCCccHHHHHhc
Confidence 35667777777777877666665543 355666666554421 23478889999999999887777777754
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccch-hHHHhcCCcHHHHHhhc--cCCHHHHHHHHHHHHH
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRT 233 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~ 233 (715)
.. ..++..+......... ....++..++.++.|++......+ ..-.....+..+...+. ..+++....++.+|++
T Consensus 151 ~~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGt 228 (268)
T PF08324_consen 151 FD-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGT 228 (268)
T ss_dssp HH-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 32 2344444332221100 112888899999999983111111 00001113445555332 2688999999999999
Q ss_pred HhcCChhh
Q 005088 234 LAFKNDEN 241 (715)
Q Consensus 234 L~~~~~~~ 241 (715)
|....+..
T Consensus 229 L~~~~~~~ 236 (268)
T PF08324_consen 229 LLSSSDSA 236 (268)
T ss_dssp HHCCSHHH
T ss_pred HhccChhH
Confidence 99644333
No 299
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=76.32 E-value=1e+02 Score=32.06 Aligned_cols=225 Identities=15% Similarity=0.127 Sum_probs=115.9
Q ss_pred CccchHHHhhHHHHHHhhcCChhhHHHHHhcCC---hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhH
Q 005088 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA---LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (715)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~---l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (715)
.|++..+..+|+++|+.+..+++....+-..-. +...+..+...+.+ ..+....+|+|..--. ...
T Consensus 56 ~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~------K~i~~~~l~~ls~Q~f-----~~~ 124 (372)
T PF12231_consen 56 DPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP------KSICTHYLWCLSDQKF-----SPK 124 (372)
T ss_pred CCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHcCCC-----CCc
Confidence 456779999999999999988777655544332 33444444333321 2666666666655322 112
Q ss_pred HHhcCCcHHHHHhhc-----cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 203 VRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
+.....+..++..+. -++..+....+.++.+|....|..-..-. .--++.++..+-+....++..|...+..+.
T Consensus 125 ~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 125 IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 333444555555443 24567788888999999864443321111 124566776666777777777666655553
Q ss_pred c---CChhHHHHHH---Hc----C-----ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh
Q 005088 278 H---SSPNIKKEVL---AA----G-----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 278 ~---~~~~~~~~~~---~~----g-----~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 342 (715)
. .+......+. +. + +.+.+..++.+.+......-.|...-+.-+++....--.-...+...-..+
T Consensus 204 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cF 283 (372)
T PF12231_consen 204 KCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCF 283 (372)
T ss_pred HHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHh
Confidence 2 1111212111 11 1 222345555552222211112211111112221000001122334444456
Q ss_pred CCCCHHHHHHHHHHHHHhHH
Q 005088 343 QSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (715)
+++++.+|..|..+=..+..
T Consensus 284 n~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 284 NSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 78999999988877766665
No 300
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=75.97 E-value=1e+02 Score=31.93 Aligned_cols=260 Identities=16% Similarity=0.135 Sum_probs=125.2
Q ss_pred HHHHHHHHHhc-C-hhhHHHHHhcCChHHHHhhhcCCCCccc---ccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHh
Q 005088 82 RATHVLAELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEA---DRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (715)
Q Consensus 82 ~a~~~L~~l~~-~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~---~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~ 155 (715)
..+.++..+.. + |+.-+.-. ...+..+..+|..+.+... ...+. .-+.++..++..+...+ ...+.-...+
T Consensus 59 lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~-~l~kvK~~i~~~~~ly~~kY~e~f~~~l- 135 (370)
T PF08506_consen 59 LILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPG-LLEKVKAWICENLNLYAEKYEEEFEPFL- 135 (370)
T ss_dssp HHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS---HHHHHHHHHHHHHHHHHHH-HHHHHHHH-
T ss_pred HHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44555555555 3 44322111 1334455555555443211 11111 12366666666666665 3322211111
Q ss_pred cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH-----hhc-------------
Q 005088 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-----LLE------------- 217 (715)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~-----ll~------------- 217 (715)
...+..+.++|......... ..+...++..|..++. ....+..+...+.++.+++ .+.
T Consensus 136 ~~fv~~vw~lL~~~~~~~~~---D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP 211 (370)
T PF08506_consen 136 PTFVQAVWNLLTKISQQPKY---DILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDP 211 (370)
T ss_dssp HHHHHHHHHHHTC--SSGGG---HHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhhhcccc---cHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCH
Confidence 23456666677554332222 3667778888887764 2222222222222222222 111
Q ss_pred ----------cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc----C--CCHHHHHHHHHHHHHhhcCCh
Q 005088 218 ----------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----S--EDSAIHYEAVGVIGNLVHSSP 281 (715)
Q Consensus 218 ----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~----~--~~~~v~~~a~~~L~~L~~~~~ 281 (715)
++...-+.+|+..|..|+...+.....+. ...+..++. + .+..-+..|+..++.|+....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 11134577899999999853222211111 122223332 2 355677778888888875432
Q ss_pred h------------HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHH
Q 005088 282 N------------IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (715)
Q Consensus 282 ~------------~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v 349 (715)
. ....+...-++|-|. --.+..+-++..|++.+...-..-+. ..+ .+++|.++.+|.+++.-|
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcch
Confidence 1 123333444555544 11133466777888888777543222 222 347899999999999999
Q ss_pred HHHHHHHH
Q 005088 350 REMSAFAL 357 (715)
Q Consensus 350 ~~~a~~~L 357 (715)
...|+.++
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 98888765
No 301
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=75.11 E-value=1.5e+02 Score=33.25 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=139.2
Q ss_pred cCChHHHHhhhcCCCCcccccCCCcc-chHHHhhHHHHHHhhcC---ChhhHHHHHhcCChHHHHHHHccccCCCcchhh
Q 005088 103 GGAVPALVKHLQAPPTSEADRNLKPF-EHEVEKGSAFALGLLAV---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (715)
Q Consensus 103 ~g~v~~L~~lL~~~~~~~~~~~~~~~-~~~v~~~a~~~L~~l~~---~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~ 178 (715)
.|.++.++..|...... |... ...-.+.|++.++++.+ .+.....+.+.=+++.++..+++...
T Consensus 407 qgiLsf~~sil~qsaa~-----psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------- 474 (970)
T COG5656 407 QGILSFLLSILGQSAAT-----PSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------- 474 (970)
T ss_pred hhHHHHHHHHHhcccCC-----CCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc-------
Confidence 57889999999544331 1111 12334457777777652 33333344444455666666666554
Q ss_pred hHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHH
Q 005088 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLIL 256 (715)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ 256 (715)
-++..+|..+..+..+-+ ....-..+.+....++++++-.|+..|+-+|..+..++ .....+.. .+.++.|+.
T Consensus 475 -fL~Srace~is~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLs 549 (970)
T COG5656 475 -FLKSRACEFISTIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLS 549 (970)
T ss_pred -chHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHH
Confidence 677889999988843222 21222234556677777777788888888888888643 33333332 233444444
Q ss_pred hhcCCCHHHHHHHHHHHHH-hhcCChhHHHHHH---HcCChHHHHhhhccCC------hHHHHHHHHHHHHHhcC--Ccc
Q 005088 257 MLRSEDSAIHYEAVGVIGN-LVHSSPNIKKEVL---AAGALQPVIGLLSSCC------SESQREAALLLGQFAAT--DSD 324 (715)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~-L~~~~~~~~~~~~---~~g~l~~L~~ll~~~~------~~~~~~a~~~L~~l~~~--~~~ 324 (715)
+-+.-+.++...+...+.. .+..-......+. ...+++....++.+.+ .+-+..|.+.|..+.+- +-+
T Consensus 550 LSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle 629 (970)
T COG5656 550 LSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE 629 (970)
T ss_pred hcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc
Confidence 4444344444444333322 1111011111111 1123333444443321 12233344444433210 111
Q ss_pred hhHHH---hhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCC-hhHHHHHHHHHHhc
Q 005088 325 CKVHI---VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGL 399 (715)
Q Consensus 325 ~~~~~---~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l 399 (715)
++..+ ......|.+-=.|.+.-...-..|+..+-+.+... .-.-..-|+.+.+.+++.+.. ..-...+..++.|+
T Consensus 630 n~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nf 709 (970)
T COG5656 630 NRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNF 709 (970)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 11111 12233444444455656666667777777666554 111122244555556665444 35566777788877
Q ss_pred c
Q 005088 400 A 400 (715)
Q Consensus 400 ~ 400 (715)
.
T Consensus 710 i 710 (970)
T COG5656 710 I 710 (970)
T ss_pred H
Confidence 4
No 302
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.16 E-value=15 Score=41.56 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=92.0
Q ss_pred ccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh
Q 005088 127 PFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (715)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (715)
.+.+.++.++.-+|+++| .+....+. .+|.+++-|..++.. .++.+.+-+++.+|.+.. +..
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~YT-----am~ 1004 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSYT-----AMT 1004 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHHH-----HHH
Confidence 456688999999999999 66555332 579999988877653 777778888888886332 333
Q ss_pred cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC--ChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005088 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN--ALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 206 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (715)
...+|.+...|.++++-+++.++..|.+|.+. . +++ .| ++..+.. +-+.+++++..+=.+++.+..
T Consensus 1005 d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~-~-----~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1005 DRYIPMIAASLCDPSVIVRRQTIILLARLLQF-G-----IVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh-h-----hhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999852 1 111 12 2233333 345688888888888877743
No 303
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=73.56 E-value=52 Score=31.70 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=71.6
Q ss_pred cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCC--HHHHHHHHHHHHH
Q 005088 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRT 233 (715)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~ 233 (715)
..+++.++++++.++.....-..+-+.+....+|..++ .|-++.|..++.+++ .-++..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 34689999999776541110000123333334444444 366778888888765 5689999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHH
Q 005088 234 LAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQP 295 (715)
Q Consensus 234 L~~~~~~~~~~~~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~ 295 (715)
++...+..|..+++. +..++.. +...+..+....+..+..|... --...+...+.|.++.
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 998888888877653 4444433 4444444334444444444211 1112344455666654
No 304
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.28 E-value=1.7e+02 Score=33.17 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=47.2
Q ss_pred HHHHHcCChHHHHhhhccCChHHHHH-HHHHHHHHhcCCcchhHHHhhcCChHHHHH-HhCC--CCHHHHHHHHHHHHHh
Q 005088 285 KEVLAAGALQPVIGLLSSCCSESQRE-AALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQS--PDVQLREMSAFALGRL 360 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-~L~~--~~~~v~~~a~~~L~~l 360 (715)
..+.+...+..+-.-|+..+.+.|+. |+..++.|+...+.....++. ..+..+++ ...+ .++.-+..+......+
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~tal 433 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTAL 433 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHH
Confidence 56677778888888888777766655 566888888655433333332 22233332 2222 4566666777777666
Q ss_pred HHHH
Q 005088 361 AQVI 364 (715)
Q Consensus 361 ~~~~ 364 (715)
+...
T Consensus 434 aik~ 437 (960)
T KOG1992|consen 434 AIKG 437 (960)
T ss_pred Hhhc
Confidence 6554
No 305
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.94 E-value=1.1e+02 Score=36.94 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=87.5
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhH
Q 005088 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (715)
Q Consensus 248 ~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (715)
.+++|.|..-|.+++..+|..|+..++.+......... =-.......++.-+.+.+.++|..+.....++-..++....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 36778888888889999999999999999765432211 00123455666666778889999988888776654443322
Q ss_pred HHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
... ..+.--..+.|+.+|.....++..+.... .-.+... .+..+...+.++.+.||..|...|..+-.
T Consensus 337 ~~~-----~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 AST-----ILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHH-----HHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 111 11111123345554433222222222111 1112222 55566667788899999999988887753
No 306
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=72.23 E-value=32 Score=27.60 Aligned_cols=66 Identities=24% Similarity=0.205 Sum_probs=49.2
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHH
Q 005088 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 396 (715)
Q Consensus 331 ~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 396 (715)
....+..|+.+++.++......++..|..++.+. ...+.+-|+...|-++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567889999999988889999999999999888 56666677777766655555666655554444
No 307
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.92 E-value=6.2 Score=39.03 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=55.0
Q ss_pred HHHHHHHHhccCccchhHHHhcCCcHHHHHhh--ccCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005088 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (715)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (715)
....++++|..++.++..+.+.||++.++.-+ .+.+|-+++..+.++.+|..++..+++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 66799999999999999999999999888765 4567999999999999999988888877654
No 308
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.63 E-value=2.2e+02 Score=33.67 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=92.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcch-hHHHhhc
Q 005088 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQR 332 (715)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~ 332 (715)
+++-.++-++++|..|+..|+--....| ..+++...+..+--.|.+.+.+||..++.+|..|...+... .....-.
T Consensus 292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFts 368 (1048)
T KOG2011|consen 292 FVHRYRDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTS 368 (1048)
T ss_pred eeeecccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3344456789999999999988876555 44566777888888889999999999999999997653221 1222223
Q ss_pred CChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 333 GAVRPLIEML-QSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 333 ~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
.+=..++++. ++-+..|+..++..+..+.. ..+....-+..+..++-+.++.++..|...+..=
T Consensus 369 RFK~RIVeMadrd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 369 RFKDRIVEMADRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 4445666676 44556666544433322221 2233344456677888888888888888777654
No 309
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=70.70 E-value=2.3 Score=41.85 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=45.8
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCc-hhhhchhhcHHHHHH
Q 005088 644 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEIHN 699 (715)
Q Consensus 644 ~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~l~~~~~~~l~~ 699 (715)
.++++||+.++-=+.....+.|.+.|+.|+..|+.+|+.++ .+.-++.+.+..|.+
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~ 127 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLAD 127 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHH
Confidence 37899999999999999999999999999999999999865 455565555555543
No 310
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=70.18 E-value=43 Score=30.78 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=54.9
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (715)
.++.+++++-+++..++..|+.++..+...-=. .-...+|.|+.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV-----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 456777888889999999999998877742100 11235889999999999999999999999997665554
No 311
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=70.10 E-value=4.7 Score=38.68 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=58.3
Q ss_pred cEEEEecCeeecchHHHHhhcc-HHHHHhhcCCCC---CCCCCceec-CCCCHHHHHHHHHHHhcCCcc-cCHHHHHHHH
Q 005088 549 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR---EKDARDIEI-PNIRWEVFELMMRFIYTGSVD-VTLDIAQDLL 622 (715)
Q Consensus 549 d~~~~~~~~~~~~h~~iL~~~s-~~f~~~~~~~~~---e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~ll 622 (715)
-++..+++..|.+.+.+|.+.- .-.-.||.+++. ....+++.+ ++++...|+.+|+|.-+|-+. .+.-.+.+|-
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 4667788888999888887543 234667766542 122235555 469999999999999999876 3445667777
Q ss_pred HHHHHhChh
Q 005088 623 RAADQYLLE 631 (715)
Q Consensus 623 ~~A~~~~~~ 631 (715)
+++|++.++
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 888887663
No 312
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=69.12 E-value=48 Score=32.88 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=49.9
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHhh----c--------CCCHHHHHHHHHHHH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILML----R--------SEDSAIHYEAVGVIG 274 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~l~~L~~ll----~--------~~~~~v~~~a~~~L~ 274 (715)
.+|.++.++.+.++.++..++.+|..+....+... ..+...|..+++-..+ . +++..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 67899999999999999999999999996433332 2366777766655443 2 234456677777777
Q ss_pred Hhh
Q 005088 275 NLV 277 (715)
Q Consensus 275 ~L~ 277 (715)
.|+
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 773
No 313
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.05 E-value=1.3e+02 Score=33.01 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhc---CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHH
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRME---GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTL 254 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~---g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~l~~L 254 (715)
++.-.|+.+|+-+..++..+...+... ..+..++..+. .++..+..++++|.|+-. ++..+..+... ..+..+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhh
Confidence 667778888888876555444333222 23444554444 456778889999999996 57776665443 111222
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-----ChHHHHHHHHHHHHHhcCCcchhHHH
Q 005088 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVHI 329 (715)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (715)
...-..++..++........|++.. ..+.-.+.+..+.+...+... +.+.....+.+|++++..+.. ...+
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~-~~~~ 712 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS-VIQL 712 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH-HHHH
Confidence 2222223455655555455555321 111111245555555555432 234455567788999865433 3344
Q ss_pred hhcCChHHHHHHhCC-CCHHHHHHHHHH
Q 005088 330 VQRGAVRPLIEMLQS-PDVQLREMSAFA 356 (715)
Q Consensus 330 ~~~~~l~~L~~~L~~-~~~~v~~~a~~~ 356 (715)
.+.--+..+..-+++ ...+..+..+..
T Consensus 713 A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 444456667666654 333444444433
No 314
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.07 E-value=22 Score=31.06 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=58.6
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhccC
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 401 (715)
++..|..-|.+.++.++..|+..|-.++.+. ...+.+..++..|.+++.. .+..|+..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999998887 6677788899999999976 789999999999988763
No 315
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.85 E-value=1.4e+02 Score=32.64 Aligned_cols=170 Identities=19% Similarity=0.116 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-----------cCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (715)
++...+-..|..+... +-+...+..|..+.. ..++.++...+..|..=.. . .....
T Consensus 252 ~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----A--a~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----A--ATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----H--HhCCc
Confidence 7777788888777643 122344556666554 1245666644444443211 0 01112
Q ss_pred CChHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCChh-H---HHHHHHcCChHHHHh----hhccCChHHHHHHHHHH
Q 005088 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPN-I---KKEVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (715)
Q Consensus 249 g~l~~L~~ll~~~--~~~v~~~a~~~L---~~L~~~~~~-~---~~~~~~~g~l~~L~~----ll~~~~~~~~~~a~~~L 315 (715)
..+..+..-+.+. +..++..++..+ .....+... . ....+..++.+.+-. --...+...|..+..+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3344444445555 556666666666 444333222 2 223334566665510 11123578889999999
Q ss_pred HHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
+.++...+... .-+-+.+..|.+-|....++++...-.||..++...
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 99997666542 123467788888888899999999999999998766
No 316
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.81 E-value=1.4e+02 Score=29.21 Aligned_cols=165 Identities=22% Similarity=0.190 Sum_probs=95.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhc----------CChHHHHHhhccCC----hhHHHHHHHHHHhccC
Q 005088 336 RPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHN----------GGLVPLLKLLDSKN----GSLQHNAAFALYGLAD 401 (715)
Q Consensus 336 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~----------~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~ 401 (715)
+.+++-+.+. ..-+.+...|..|+......++.. ..+|.++..+.+++ ......++..|..+|.
T Consensus 67 ~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 67 PLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred HHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 3344444442 233455666666665552222222 34455666665555 1344566677888774
Q ss_pred C--CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHH----hhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 402 N--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 402 ~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
. .++...+...- .+.. .+...+.+...+..+...+ ...++..|+.+|..+.+.++..+...|..+..
T Consensus 145 ~~~~~~La~il~~y-----a~~~--fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~ 217 (262)
T PF14225_consen 145 AQGLPNLARILSSY-----AKGR--FRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLP 217 (262)
T ss_pred hCCCccHHHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 3 22222222211 0111 1344445555555555544 45677889999998999999999999999987
Q ss_pred CCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 476 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 476 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
..+.+.. ...+.+..+.+++..+... .|...|-+
T Consensus 218 ~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~ 251 (262)
T PF14225_consen 218 HVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDE 251 (262)
T ss_pred cccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHH
Confidence 7665544 4556788889998775543 34444433
No 317
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=65.09 E-value=7 Score=31.70 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhh
Q 005088 465 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 506 (715)
Q Consensus 465 ~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 506 (715)
.....+..|+..|+....+++.|+++.|+.||.+.|.++...
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 456778889999998889999999999999999999988543
No 318
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=65.08 E-value=1.2e+02 Score=32.08 Aligned_cols=230 Identities=10% Similarity=0.053 Sum_probs=106.3
Q ss_pred cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHH
Q 005088 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (715)
Q Consensus 103 ~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~ 181 (715)
...+..|+.++.+.++ .=|.....+|.++. ..+..|..+.. .....+.+++...... .-
T Consensus 132 ~~fi~~Ll~l~~S~D~------------rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~-------~g 191 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDP------------RERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERH-------NG 191 (409)
T ss_dssp HHHHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS---------ST
T ss_pred HHHHHHHHHHcCCCCH------------HHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccc-------cC
Confidence 3445667777777666 66667777777776 44455444432 2445555666544332 33
Q ss_pred HHHHHHHHHHHhccCc-cchhHHHhcCCcHHHHHhhccCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 182 IRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 182 ~~~a~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
...++.+++.+..+-. +.++... .=....|+.+.+.+. ......-..++......++.....++ ..+++.--
T Consensus 192 I~elLeil~sii~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP 265 (409)
T PF01603_consen 192 IAELLEILGSIINGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWP 265 (409)
T ss_dssp HHHHHHHHHHHHTT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-
T ss_pred HHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCC
Confidence 4456666666654321 1111100 001123344444333 22234444555555554554433322 22222221
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhh--cCChHH
Q 005088 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRP 337 (715)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~ 337 (715)
..+..=...-+.-+..+...-+...-.-+...+...+...+.+.+..|.+.|+....|= .....+.+ ..++|.
T Consensus 266 ~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~~li~~~~~~i~p~ 340 (409)
T PF01603_consen 266 KTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFLSLISQNSRVILPI 340 (409)
T ss_dssp SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHHHHHHCTHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHHHHHHhChHHHHHH
Confidence 22333233334444444332222111222233567777788888888877776643321 11111111 124566
Q ss_pred HHHHhC-----CCCHHHHHHHHHHHHHhHHH
Q 005088 338 LIEMLQ-----SPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 338 L~~~L~-----~~~~~v~~~a~~~L~~l~~~ 363 (715)
+...|. +.+..++..+..++..+..-
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 666552 24677888887777666543
No 319
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.91 E-value=1.3e+02 Score=36.30 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc----C---CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~----~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 252 (715)
+++.....++.++.....+ .+. .| .+.+.+++++ . ...+.+.+-.+|.-++.+.-..-..-.-.++++
T Consensus 857 evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 6666667777777642222 111 23 5555555542 1 234555555666655532111100011123455
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHh
Q 005088 253 TLILMLRS-EDSAIHYEAVGVIGNL 276 (715)
Q Consensus 253 ~L~~ll~~-~~~~v~~~a~~~L~~L 276 (715)
.+..+.+. .|..+-..|++.++++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtv 956 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTV 956 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHH
Confidence 55555443 3556666666666666
No 320
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.29 E-value=67 Score=27.55 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=57.4
Q ss_pred ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcc-hhHHHhhcCChHHHHHHhCC---CCHHHHHHHHHHHHHhHHHH
Q 005088 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~L~~---~~~~v~~~a~~~L~~l~~~~ 364 (715)
++..|..-|.++++.++..|+.+|-.+..+... ....+....++..|+.++.. .++.|+..++..+.+.+...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466788888888999999999988888766544 55666666788888888864 57889999999988887544
No 321
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.88 E-value=1.5e+02 Score=28.98 Aligned_cols=210 Identities=11% Similarity=0.059 Sum_probs=113.9
Q ss_pred HHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
.+|..|+..|+.+. .-+... ....-+..|+.+..+.-.+ ......++..+..|.....-.... ....+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D------~~~~~~~l~gl~~L~~~~~~~~~~--~~~i~ 82 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDD------HACVQPALKGLLALVKMKNFSPES--AVKIL 82 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhcc------HhhHHHHHHHHHHHHhCcCCChhh--HHHHH
Confidence 89999999999887 433221 1122245555555443221 144555577777776432211111 01122
Q ss_pred HHHHHhhc--cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
..+.+-.. +-....|..+...+..+.......-. -...+++..+++++..+ ||.-...+...+..+...-+-
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc----
Confidence 22222111 12246778888888888853222221 12245677888888765 888777787777777543221
Q ss_pred HHHcCChHHHHhhhcc----------CCh-HH-HHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHH
Q 005088 287 VLAAGALQPVIGLLSS----------CCS-ES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~----------~~~-~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~ 354 (715)
....+-+.+.+.. +++ .+ +..-...|.+.....+.. ..-.+|.|++-|.++.+.++..++
T Consensus 158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHH
Confidence 2223333333321 111 22 223333444443333322 233579999999999999999999
Q ss_pred HHHHHhHHHH
Q 005088 355 FALGRLAQVI 364 (715)
Q Consensus 355 ~~L~~l~~~~ 364 (715)
.+|..+....
T Consensus 230 ~tL~~c~~~y 239 (262)
T PF14500_consen 230 QTLKACIENY 239 (262)
T ss_pred HHHHHHHHHC
Confidence 9888876544
No 322
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=63.10 E-value=1.9e+02 Score=30.00 Aligned_cols=292 Identities=14% Similarity=0.087 Sum_probs=146.4
Q ss_pred HhHHHHHHHHHHHhhccccch-----HHhHHHHHHHHHHHHHHhcChhhHHHHHhcC---ChHHHHhhhcCCCCcccccC
Q 005088 53 QALLSEVSAQVNVLNTTFSWL-----EADRAAAKRATHVLAELAKNEEVVNWIVEGG---AVPALVKHLQAPPTSEADRN 124 (715)
Q Consensus 53 ~~~~~~v~~lv~~L~~~l~~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~v~~L~~lL~~~~~~~~~~~ 124 (715)
......++.+++.++..+... ..+..+..+|++.|+.+..+++....+-..- .+...+..+.+++.
T Consensus 31 ~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~------ 104 (372)
T PF12231_consen 31 QALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS------ 104 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC------
Confidence 334555666666665544431 1356688999999999988877665544322 45566677766655
Q ss_pred CCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHH
Q 005088 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (715)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (715)
+..+....+|+|..---.+. +.....+..++..+..-.+.... ..+....+.++.++....+.. ++.
T Consensus 105 ----~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s---~si~~erL~i~~~ll~q~p~~--M~~ 171 (372)
T PF12231_consen 105 ----PKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPS---KSIISERLNIYKRLLSQFPQQ--MIK 171 (372)
T ss_pred ----CHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHHHHHH--HHH
Confidence 23777777777766443332 23334455566555443321111 278888889999998655443 222
Q ss_pred hcC-CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChh---hHHHH---Hh----CC-----ChHHHHHhhcCCCHHHHHH
Q 005088 205 MEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE---NKNQI---VE----CN-----ALPTLILMLRSEDSAIHYE 268 (715)
Q Consensus 205 ~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~---~~~~~---~~----~g-----~l~~L~~ll~~~~~~v~~~ 268 (715)
..+ .++.++..+-+....++..|...+..+...-+. ....+ .+ .+ +.+.|..++.+.+......
T Consensus 172 ~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~ 251 (372)
T PF12231_consen 172 HADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAM 251 (372)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHH
Confidence 223 567777766666667777666655554421111 11111 11 11 1223445555522222222
Q ss_pred HHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhc---CCcchhHHHhhcCChHHHHHHhCC-
Q 005088 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQS- 344 (715)
Q Consensus 269 a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~- 344 (715)
-+|...-+.-+++.....-.-...+.+.-..+++.++.++..|..+=..+.. .++......... +..++...++.
T Consensus 252 ~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~ 330 (372)
T PF12231_consen 252 QIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRRE 330 (372)
T ss_pred HHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCcc
Confidence 2222222212222111111112344555556677788888777654444332 122111111111 22333444433
Q ss_pred CCH----HHHHHHHHHHHHhHHHH
Q 005088 345 PDV----QLREMSAFALGRLAQVI 364 (715)
Q Consensus 345 ~~~----~v~~~a~~~L~~l~~~~ 364 (715)
... .++..+...++++....
T Consensus 331 ~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 331 KSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred ccccccHHHHHHHHHHHhchHHHH
Confidence 223 66777777777776443
No 323
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=63.05 E-value=75 Score=31.50 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HHHHHcCChHHHHhhhc------------cCChHHHHHHHHHHH
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLS------------SCCSESQREAALLLG 316 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~l~~L~~ll~------------~~~~~~~~~a~~~L~ 316 (715)
++|.++.++.+.+++++..++.+|..+....+... ..+...|..+++-+.+. +.+..+...+.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999976544322 22556776655554443 234556666777777
Q ss_pred HHh
Q 005088 317 QFA 319 (715)
Q Consensus 317 ~l~ 319 (715)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 764
No 324
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=62.94 E-value=2.1e+02 Score=31.52 Aligned_cols=160 Identities=22% Similarity=0.149 Sum_probs=81.7
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhHHHHH---hCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc--CC
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDENKNQIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GA 292 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~ 292 (715)
.-.++++..|+.+|+.+..+...+..... ...++..++..+. .++..+..++++|.|+..+ +..++.+... -.
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 44567788888888888865443332222 1234455555554 5677788899999999765 4443333222 11
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHhHHHH--H
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVI--T 365 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~--~ 365 (715)
+..+.+.=...+..++...+....|.+..- .+.-.+.+..+.+...+.. .+.+.....+.||++|+... .
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 222222211223344444444444433110 0001113444444444422 23334445667788887766 5
Q ss_pred HHHHhcCChHHHHHhhc
Q 005088 366 AGIAHNGGLVPLLKLLD 382 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll~ 382 (715)
..+...-.+..+..-++
T Consensus 710 ~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHhcCHHHHHHHHH
Confidence 55555556666666663
No 325
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.56 E-value=2.6e+02 Score=31.30 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCC
Q 005088 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (715)
Q Consensus 53 ~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~ 118 (715)
+.....+..++..|...+. ..+.+.-.+..|+.-+..|..|..+...|++..+++.|.+...
T Consensus 328 qe~~dd~~yiLStlq~~~~----~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~ 389 (865)
T KOG2152|consen 328 QEFTDDLEYILSTLQSALL----PMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHE 389 (865)
T ss_pred hhhhhhHHHHHhhhhhccc----cHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhcccc
Confidence 3345555556666655522 2223333333444444469999999999999999999988766
No 326
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=62.52 E-value=30 Score=30.17 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=58.5
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (715)
.++..|.+-+.+.++.++..|+..|-.+.... ......+...+++..|.+++.. .+..|+..++..|...+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 35667888888899999999999999988633 3456667778899999999988 68899999999998875
No 327
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=62.30 E-value=1.2e+02 Score=39.26 Aligned_cols=196 Identities=18% Similarity=0.123 Sum_probs=111.0
Q ss_pred hcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005088 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 205 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
..+.+..+...+.+..-.++..+...+++++..++...-.....-.+..+-.+..+.-..+...+..-+..+....+...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 34445555566666677788888888888887666322111111122222222222222222222222222222211111
Q ss_pred HHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHH
Q 005088 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~ 363 (715)
... ....+..++..+.+.+..+...+..+++.||...........+ ..++.+.+.+.. ++..-+.++.++++++...
T Consensus 643 ~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 643 SPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred Hhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 111 1334566777777777888888889999998755543444444 556667777655 5667788999999999877
Q ss_pred H----HHHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhccCC
Q 005088 364 I----TAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 364 ~----~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 402 (715)
. ........++..++..+.. ....++..+...++++-..
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 6 3334444455566665543 4566778888888876433
No 328
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.01 E-value=37 Score=38.63 Aligned_cols=126 Identities=14% Similarity=0.222 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHH
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 341 (715)
+.++..+.-+|+++|-..+... ...+|.|++-|+-. ...+|.+..-+++.+|.... +.-...+|.+-..
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHH
Confidence 4578888889999987655543 33578888888754 35666666777777775322 2224678999999
Q ss_pred hCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCC--hHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 342 LQSPDVQLREMSAFALGRLAQVITAGIAHNGG--LVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~--l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
|.++++-||+.+...|.+|.+.. ++.-+| .-.++-.+-+.++.++..|-..++.+-.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998655 211111 1123333346778899888888888743
No 329
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=61.31 E-value=1.6e+02 Score=30.11 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~ 297 (715)
+++-....+.++..+..+.+.....-.....-..++.++.+. ...+|..|+.++..+...++.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 444555666667666643222111111223456788888887 8999999999999998777663 2223444455
Q ss_pred hhhcc
Q 005088 298 GLLSS 302 (715)
Q Consensus 298 ~ll~~ 302 (715)
.++..
T Consensus 251 ~~l~~ 255 (339)
T PF12074_consen 251 KWLSS 255 (339)
T ss_pred HHHHh
Confidence 55543
No 330
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.75 E-value=39 Score=29.01 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=57.3
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHhhcC---CCHHHHHHHHHHHHHhhc
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~g~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~ 278 (715)
.++..|.+-++++++.++..|+.+|-.+...... ....+....++..|++++.. .++.|+..++..+.+.+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3566788888899999999999999999874433 55666666788889999875 478999999999988753
No 331
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=60.40 E-value=63 Score=27.96 Aligned_cols=141 Identities=21% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhh
Q 005088 348 QLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ 426 (715)
Q Consensus 348 ~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~ 426 (715)
.++...+.++..++.+. .... .+.++.+++++.+ ++......+.+|..+...-.. +.+ ..+. .
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W--p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~---~~~-~~~~---------~ 66 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW--PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD---FRR-SSLS---------Q 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT---SHC-CHSH---------H
T ss_pred hHHHHHHHHHHHHHHHHChhhC--chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh---hhc-hhhh---------H
Confidence 46667777787777665 2211 2466677777766 455566677777666422100 000 0000 0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhh----hhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcc
Q 005088 427 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE----KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 502 (715)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 502 (715)
..+.-+. ..+.. ....+++.+.+.+.... .++...++.++.......+.... ...+.++.+.+++ .++.
T Consensus 67 ~r~~~l~---~~l~~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i-~~~~~l~~~~~~l--~~~~ 139 (148)
T PF08389_consen 67 ERRRELK---DALRS-NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI-INSNLLNLIFQLL--QSPE 139 (148)
T ss_dssp HHHHHHH---HHHHH-HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH-HSSSHHHHHHHHT--TSCC
T ss_pred HHHHHHH---HHHHH-HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh-ccHHHHHHHHHHc--CCHH
Confidence 0000000 01111 13345666666666653 78899999999998885554444 3567899999998 4566
Q ss_pred hhhhhHHHH
Q 005088 503 QQLDGAVAL 511 (715)
Q Consensus 503 ~~~~aa~~L 511 (715)
.+..|+.+|
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 688888775
No 332
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.68 E-value=33 Score=29.82 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (715)
.++..|.+-+.++++.++..|+..|-.+... .......+...+++..|.+++.. .++.|+..++..+...+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 4567888888899999999999999988864 24456777888899999999874 57889999999888875
No 333
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=59.45 E-value=4.9e+02 Score=33.40 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=79.1
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhHHHH----HhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDENKNQI----VECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~----~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 292 (715)
+++..+...|+..|..++...-+ +..+ ....++..+..++.+ .+.+++..++.++.++..... .-+.. +
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle-~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-G 1221 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLE-REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-G 1221 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcc-hhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-C
Confidence 44667888888888888853221 1111 112456677776654 478999999999999954322 22333 5
Q ss_pred hHHHHhhhc----cCChHHHHHHHHHHHHHhcCCcchhHHHhh--cC----ChHHHHHHhCC-CCHHHHHHHHHHHHHhH
Q 005088 293 LQPVIGLLS----SCCSESQREAALLLGQFAATDSDCKVHIVQ--RG----AVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (715)
Q Consensus 293 l~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~----~l~~L~~~L~~-~~~~v~~~a~~~L~~l~ 361 (715)
.+.++.++. +.++.+...|-.++..+.... -..+.. .+ ++..|..+.+. .+..+-..|+..|++++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~---f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY---FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh---hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 566666654 456777777777777765321 111110 12 33344444433 34667777888887664
Q ss_pred H
Q 005088 362 Q 362 (715)
Q Consensus 362 ~ 362 (715)
.
T Consensus 1299 ~ 1299 (1780)
T PLN03076 1299 T 1299 (1780)
T ss_pred H
Confidence 4
No 334
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=58.78 E-value=2.9e+02 Score=36.22 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=90.7
Q ss_pred HHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcc
Q 005088 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 245 ~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
....+.+..+...+.++.-.++..+...+++++..++...-.-+..-.+..+..+..+.-..+....+.-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 44455666677777778888999999999999887764322222222222222222222222222222222222211111
Q ss_pred hhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH---HHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhcc
Q 005088 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT---AGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~---~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~ 400 (715)
.....+ ...+..++..+.+.++.+...+..++..|+.... ....+ ..+..+.+.+ ...+..-+..+.++++++.
T Consensus 641 ~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 111111 3445667777788888888899999999987762 22222 4455566655 4466778889999999997
Q ss_pred CCC
Q 005088 401 DNE 403 (715)
Q Consensus 401 ~~~ 403 (715)
...
T Consensus 719 s~~ 721 (2341)
T KOG0891|consen 719 SST 721 (2341)
T ss_pred ccc
Confidence 543
No 335
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.71 E-value=42 Score=29.03 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=56.7
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhcc------CChhHHHHHHHHHHhccC
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 401 (715)
++..+..-|.+.++.++..|+..|-.++.+. ...+...+++..|++++.. .+..|+..++..+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999888877 6777888899999999953 468899999988887753
No 336
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.59 E-value=1e+02 Score=36.15 Aligned_cols=134 Identities=15% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccch
Q 005088 343 QSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 422 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~ 422 (715)
++-++.+|..+...|+-........+.+...+..+-=.|++.+..||..++.+|..|....+....+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l----------- 365 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL----------- 365 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH-----------
Confidence 456799999999999988877777777777777777778999999999999999999766433222111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH-hhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCc
Q 005088 423 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 501 (715)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 501 (715)
+.+..=.+++.+. .+-+..|+...+..+..+... .+....-+.++..++.+.++
T Consensus 366 --------------------FtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~~r 420 (1048)
T KOG2011|consen 366 --------------------FTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDSNR 420 (1048)
T ss_pred --------------------HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhccCc
Confidence 1223445777777 333555555444433332211 12334457788899999999
Q ss_pred chhhhhHHHHH
Q 005088 502 KQQLDGAVALF 512 (715)
Q Consensus 502 ~~~~~aa~~L~ 512 (715)
+++.+|..-+.
T Consensus 421 ~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 421 RVAVAAGEFLY 431 (1048)
T ss_pred chHHHHHHHHH
Confidence 99888776554
No 337
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.49 E-value=38 Score=29.45 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=58.0
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhccC
Q 005088 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 333 ~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 401 (715)
.++..|.+-|.++++.++..|+..|-.++.+. ...+.+.+++..|.+++. ..++.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 35678888888999999999999998888875 667778889999999885 5678899999999988763
No 338
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=56.81 E-value=1.3e+02 Score=30.70 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHH
Q 005088 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (715)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 338 (715)
.+++...+.++++..+..........-.....-..++.++.+. .+++|+.|..++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 4566667777777777554332211111233456677777777 7999999999999988766553 223345555
Q ss_pred HHHhC
Q 005088 339 IEMLQ 343 (715)
Q Consensus 339 ~~~L~ 343 (715)
-.++.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 55554
No 339
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=56.53 E-value=88 Score=31.52 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=55.2
Q ss_pred EEEEecCeeecchHHHHhhccHHHHHhhcCCCCC----CCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHHHHH--H
Q 005088 550 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE----KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL--R 623 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e----~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll--~ 623 (715)
+++.+.|+.|...|.-|-..- ..++.+.-+| .+.++.- -|-+|+.|+.+|.|.-||++..+.......+ +
T Consensus 42 lvlNvSGrRFeTWknTLeryP---dTLLGSsEkeFFy~~dt~eYF-FDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeE 117 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLERYP---DTLLGSSEKEFFYDEDTGEYF-FDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEE 117 (632)
T ss_pred EEEeccccchhHHHhHHHhCc---hhhhCCcchheeecCCccccc-ccCChHHHHHHHHHhhcCcccCchHHHHHHhhhh
Confidence 566788999999998876433 3333332111 1222332 3668999999999999999998765443322 2
Q ss_pred HHHHhChhhHHHHHHH
Q 005088 624 AADQYLLEGLKRLCEY 639 (715)
Q Consensus 624 ~A~~~~~~~L~~~~~~ 639 (715)
+|-+=-+++|...|.+
T Consensus 118 LaF~Gl~PeligDCCy 133 (632)
T KOG4390|consen 118 LAFYGLVPELIGDCCY 133 (632)
T ss_pred hhHhcccHHHHhhhhh
Confidence 3433347999988753
No 340
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.68 E-value=2.1e+02 Score=27.99 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhcc-------CccchhHHHhcCCcHHHHHhhccCC----HHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 005088 180 SVIRRAADAITNLAHE-------NSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVEC 248 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (715)
...+.++..|..+... +.+.+-.+.-.+.+|.++.-+.+++ ......++..|..++.... .
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~ 148 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------L 148 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------C
Confidence 4446677777777642 1212333333345566666666555 1344566777888884211 1
Q ss_pred CChHHHHHh-hcC---CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcc
Q 005088 249 NALPTLILM-LRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 249 g~l~~L~~l-l~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
+.+..++.. .+. +..+....++..|+.-.. |+. +...+..++.+|.++...++...+.+|..+....+-
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 223333332 222 234555556666655421 221 123466788999888889999999999998754333
Q ss_pred hhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005088 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l 360 (715)
.+. ...+.+.++.++++.+... .|+.+|-+.
T Consensus 222 ~~~--~~~dlispllrlL~t~~~~---eAL~VLd~~ 252 (262)
T PF14225_consen 222 RSP--HGADLISPLLRLLQTDLWM---EALEVLDEI 252 (262)
T ss_pred CCC--cchHHHHHHHHHhCCccHH---HHHHHHHHH
Confidence 322 4456788888888765544 455555443
No 341
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.24 E-value=52 Score=28.47 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=57.0
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhh
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~ 277 (715)
.++..+.+-+.++++.++..|+..|-.+...- ......+...+++..|++++.. .+..|+..++..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35667888888999999999999999888632 4556777888899999999953 46789999888887774
No 342
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.85 E-value=2.2e+02 Score=27.59 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=54.5
Q ss_pred hCCChHHHHHhhcCCCHH--------HHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC--hHHHHHHHHHHH
Q 005088 247 ECNALPTLILMLRSEDSA--------IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLG 316 (715)
Q Consensus 247 ~~g~l~~L~~ll~~~~~~--------v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~--~~~~~~a~~~L~ 316 (715)
+..+.+.++++++.++.. +-...-.++..+ -.|-+..|..++.+++ .-+|..|..+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 356789999999766541 112222222222 3456777788887764 557788889999
Q ss_pred HHhcCCcchhHHHhhcCChHHHHHH-hCCCCHH
Q 005088 317 QFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQ 348 (715)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~l~~L~~~-L~~~~~~ 348 (715)
.++...+..+..+++ .+..++.. +..++..
T Consensus 139 ~l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ--YFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHcCCCCHHHHHH--HHHHHHHHHhccCchH
Confidence 999888877777764 24444443 4444333
No 343
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=53.84 E-value=28 Score=32.66 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=52.7
Q ss_pred hhHHHHHhcCChHHHHHHHccccCCC----------cchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc
Q 005088 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (715)
Q Consensus 148 ~~~~~i~~~~~l~~L~~lL~~~~~~~----------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 217 (715)
..+..+...|++..++.+|+.+.... .......+...+...|..+|.++..++..+... ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 45566778899999999998765432 111223788899999999999888888776642 232222222
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (715)
......-..+..++..+..+|+.....+.+. .+..++.++...... ..-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcc
Confidence 2111111245667777777777766666554 378888888663321 223445555543
No 344
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=53.74 E-value=1.1e+02 Score=24.55 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=49.6
Q ss_pred cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHH
Q 005088 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273 (715)
Q Consensus 206 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L 273 (715)
.+.+..|+...+.+.......++..|..+.. .+.....+.+-|+.+.|.++-...++..+..+-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677777777777788899999999996 677888888889998877776555666655444333
No 345
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=53.44 E-value=24 Score=28.85 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.6
Q ss_pred ChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 646 SLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 646 ~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
+.+++..++.+|..++.+.|.+.|..++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999876
No 346
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=52.99 E-value=2.2e+02 Score=28.95 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcC--ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchh
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 201 (715)
.+|..|+.++..+...+.....++..+ .+..|++++..... .+..++..|+.+|..++.+......
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~-----v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK-----VPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHHhccccHHH
Confidence 667777777777777777777778777 89999999988764 2348999999999999975554444
No 347
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=52.27 E-value=2.6e+02 Score=28.13 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHc-----------CChHHHHhhhc------cCChHHHHHHHHHHHHHhcCCcc
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-----------GALQPVIGLLS------SCCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-----------g~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
.-++|..|+.++.....+|++.+..+++. .....++..|- +.++--.--|+.++..+...++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45789999999999998888887777642 11212444443 22333334577888888877776
Q ss_pred hhHHHhhc------------CChHHHHHHhC-----CCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhh--
Q 005088 325 CKVHIVQR------------GAVRPLIEMLQ-----SPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLL-- 381 (715)
Q Consensus 325 ~~~~~~~~------------~~l~~L~~~L~-----~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll-- 381 (715)
.+..+..- ..++.+..+|. +.++.++..-+..|+.....+ ...+-+...++.|+...
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 66554432 13445555552 346777776666776666655 34444456788898876
Q ss_pred -ccCChhHHHHHHHHHHhc
Q 005088 382 -DSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 382 -~~~~~~v~~~a~~~L~~l 399 (715)
.+.+.-|+..++..|+-+
T Consensus 211 ~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHH
Confidence 234567777777777765
No 348
>PLN03205 ATR interacting protein; Provisional
Probab=52.11 E-value=2.5e+02 Score=28.83 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHhHHHH-----HHHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccCCCchhhHHHhhccccc
Q 005088 344 SPDVQLREMSAFALGRLAQVI-----TAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 417 (715)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~-----~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 417 (715)
+....|+..|+.++.-+.... ++.+....+.+.+-++| +..-..||+.|...|.-|-..+.-...|..-..-..
T Consensus 383 ~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~ 462 (652)
T PLN03205 383 RTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKN 462 (652)
T ss_pred cchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCcccc
Confidence 456667878877776665554 56666666777788888 455677999999888877766655555542110000
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-----hhhHHHHHHHHHHhhcCCCc-cchhh------hc
Q 005088 418 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-----EKGVQRRVALALAHLCSPDD-QRTIF------ID 485 (715)
Q Consensus 418 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~-~~~~~------~~ 485 (715)
..+...+... +......-+.+++.|.+.+.++ +-+++..+...|..++.... +-+++ .+
T Consensus 463 ~ad~eNd~~~---------n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~ 533 (652)
T PLN03205 463 SSDTENDSEG---------NFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQD 533 (652)
T ss_pred cccccccccc---------ccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCC
Confidence 0100000000 0001111233556666666654 56788888888988877665 33332 33
Q ss_pred CCcHHHHHHHh
Q 005088 486 GGGLELLLGLL 496 (715)
Q Consensus 486 ~~~i~~L~~ll 496 (715)
.+.+..+.+++
T Consensus 534 ~NFLmLILqvL 544 (652)
T PLN03205 534 SNFLMLILHLL 544 (652)
T ss_pred ccHHHHHHHHH
Confidence 34555555555
No 349
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=49.77 E-value=42 Score=31.46 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=56.3
Q ss_pred CcccEEE-EecCeeecchHH-HHhhccHHHHHhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCCcccCH--HHHH
Q 005088 546 TLSDVTF-LVEGRRFYAHRI-CLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQ 619 (715)
Q Consensus 546 ~~~d~~~-~~~~~~~~~h~~-iL~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~ 619 (715)
.+.|++- -++|..|..-.. +..-.-.....||++... ........+ |=+-..|+.+++|+-+-...++. .++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHH
Confidence 3455543 455544443222 222233456677776321 111223333 44567899999999996555555 6788
Q ss_pred HHHHHHHHhChhhHHHHHHH
Q 005088 620 DLLRAADQYLLEGLKRLCEY 639 (715)
Q Consensus 620 ~ll~~A~~~~~~~L~~~~~~ 639 (715)
.+.+-|++|+++.+...+.+
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHHccccHHHHHhc
Confidence 99999999999988775543
No 350
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.34 E-value=71 Score=27.39 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=56.0
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
+..|..-|++.++ .++..|+..|-.+. .++.+...+...+.+..|..++...... ..++.
T Consensus 39 ~r~l~krl~~~n~------------~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~------~~Vk~ 100 (133)
T smart00288 39 VRLLKKRLNNKNP------------HVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL------PLVKK 100 (133)
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc------HHHHH
Confidence 5567777777777 89999999999999 3677888888889999999999876543 13888
Q ss_pred HHHHHHHHHhc
Q 005088 184 RAADAITNLAH 194 (715)
Q Consensus 184 ~a~~~L~~L~~ 194 (715)
.++..+..-+.
T Consensus 101 kil~li~~W~~ 111 (133)
T smart00288 101 RILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHH
Confidence 88888877763
No 351
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=48.35 E-value=1.6e+02 Score=30.21 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=59.7
Q ss_pred ChHHHHhhhccC-------ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC----------CCCHHHHHHHH
Q 005088 292 ALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------SPDVQLREMSA 354 (715)
Q Consensus 292 ~l~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~----------~~~~~v~~~a~ 354 (715)
++|.++..+.+. +.........++..|.. ++.......-+.++|.++.++- .+++.+|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 466677666532 34455556666777764 4443333333557888887762 24478999999
Q ss_pred HHHHHhHHHH--HHHHHhcCChHHHHHhhccC--ChhHHHHHHHHHHhc
Q 005088 355 FALGRLAQVI--TAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGL 399 (715)
Q Consensus 355 ~~L~~l~~~~--~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l 399 (715)
..|..++... ...-+...+...+.+.+.++ ......-|+..|..|
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999998765 11112223333455444332 222244555555444
No 352
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=48.27 E-value=17 Score=37.97 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=53.2
Q ss_pred ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
....+-.+....++++++++..++++++......+..+....+-..+++.+..+.+++-+.+..++.-+....
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~e 401 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGENE 401 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhhH
Confidence 3444445555678999999999999998765555554555556667778888888888888888887776543
No 353
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.13 E-value=26 Score=34.87 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 226 AAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
...+.+++||..++++++.+.+.|+++.++.-. .+.+|-+++..+-++.+|...+.++++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 367789999999999999999999998877643 456899999999999999988887765554
No 354
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=47.72 E-value=26 Score=28.14 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=39.0
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhcC------------ChhhHHHHHHHHHH--cCcHHHHHHHHHHHHHHHH
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEA--FHAISLRHTCILYIMEHFD 678 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l~~~i------------~~~~~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 678 (715)
.+++.+|..|+.+.|...|.+++..++ +.+....++.--.. .+-..+.+.+..|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 468899999999999999999987753 22333333331111 2335688889999876544
No 355
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.33 E-value=7.1e+02 Score=31.71 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHhccCcc-chhHHHhcCCcHHHHHhhcc----CCHHHHHHHH------HHHHHHhcCChh--hHHH
Q 005088 178 VNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEF----TDTKVQRAAA------GALRTLAFKNDE--NKNQ 244 (715)
Q Consensus 178 ~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~------~~L~~L~~~~~~--~~~~ 244 (715)
...+...+....+.++.+-.+ .+..+. ..+...+.+ ....|+.++. .++.+++..+.. .-..
T Consensus 797 ~ls~Idta~~lfg~vfp~v~~k~~~~il-----e~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e 871 (2067)
T KOG1822|consen 797 ALSLIDTAVSLFGSVFPHVNNKIRLSIL-----EHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPE 871 (2067)
T ss_pred hhHHHHHHHHHHHHhccCccHHHHHHHH-----HHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHH
Confidence 447777788888877753332 222222 223333221 1223333333 345555532211 0111
Q ss_pred HHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHH-HHHHHHHHHhcCCc
Q 005088 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATDS 323 (715)
Q Consensus 245 ~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~ 323 (715)
.+..-....++..+...++..+-.+..+++.++...+.. ..-.+..+.+++-+.+..+.+.+ .-..+++.+-....
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg 948 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG 948 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence 111223444556666778888888888888886543321 11122345566666655433333 33344554432111
Q ss_pred chhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH
Q 005088 324 DCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~ 364 (715)
.....-.....+..+..+.++ .+|.|+..++.++.-++...
T Consensus 949 s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 949 SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCC
Confidence 111001112345667777766 45699999999998887665
No 356
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=47.31 E-value=24 Score=28.76 Aligned_cols=38 Identities=34% Similarity=0.361 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCC
Q 005088 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (715)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~ 118 (715)
...+..|..++..|+.=..+++.|+++.|+.||.+.+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 56677888888888887889999999999999998877
No 357
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=47.01 E-value=53 Score=35.75 Aligned_cols=171 Identities=16% Similarity=0.114 Sum_probs=100.0
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc--C---------CCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--S---------EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~--~---------~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
+++.+|...|-..|..+... +-+..++..|..+.. . .++.++...+..|..=.. ..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AA 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HH
Confidence 45567777788888877753 112345666666655 2 356677766666654211 00
Q ss_pred HHHcCChHHHHhhhccC--ChHHHHHHHHHH---HHHhcCCcchhHH----HhhcCChHHHHH----HhCCCCHHHHHHH
Q 005088 287 VLAAGALQPVIGLLSSC--CSESQREAALLL---GQFAATDSDCKVH----IVQRGAVRPLIE----MLQSPDVQLREMS 353 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L---~~l~~~~~~~~~~----~~~~~~l~~L~~----~L~~~~~~v~~~a 353 (715)
......+.++...+.+. +..++..+...+ .......+..... .+..++.+.+-. --...+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01123344444455544 455665655555 4433333322222 222344443310 0112567889999
Q ss_pred HHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 354 AFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 354 ~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
-.+|+.|+... .-..-+.+.+..|.+-|.+..++++...-.+|..|+.
T Consensus 395 Ye~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999888 3222455778888888888899999999999998863
No 358
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.81 E-value=77 Score=27.18 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=54.7
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhccCC--hhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~ 400 (715)
++..|.+-|.++++.++..|+..|-.++.+. ...+.+.+++..|..++.+.. +.|+..++..+...+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999998886 667778888999999886543 338888888888775
No 359
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=46.58 E-value=2.7e+02 Score=30.08 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=70.9
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc----------CCHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAA 227 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~v~~~a 227 (715)
.+|.++.++...-..+.......+..+.+..++.|.. ++.+.-.-.-...+|.++.++-+ ....+|.-|
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 3677777776654332112223677777888888874 66655444555677888877642 235688888
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 005088 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (715)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L 276 (715)
+..+..++.+....... ....++..+.+.+.+. +....+-++..|..|
T Consensus 319 A~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 88888888643333322 3334556666666554 445556566666555
No 360
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=46.47 E-value=2.3e+02 Score=25.83 Aligned_cols=73 Identities=16% Similarity=0.031 Sum_probs=48.5
Q ss_pred ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
.++.+++-|...+...+--|...+..+.......+..-+-..++.+|...|.+.++++...++.+|..|+...
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 5677777777665555555555555554432222222222456778888899999999999999999996554
No 361
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=45.80 E-value=51 Score=30.86 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhh
Q 005088 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (715)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 300 (715)
..+...+...|..++.++..++..+.+. ++.++..+.......-..+..++..+..+|.+....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999998888764 33333333332222223456777778788888777765544 78888888
Q ss_pred ccCChHHHHHHHHHHHHHhc
Q 005088 301 SSCCSESQREAALLLGQFAA 320 (715)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~ 320 (715)
...... ..-+..|..+|.
T Consensus 152 ~~~gr~--~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCV 169 (207)
T ss_dssp --------------------
T ss_pred HHcCCC--hHHHHHHhhhcc
Confidence 763211 123445555554
No 362
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=45.77 E-value=2.4e+02 Score=25.84 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=82.2
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (715)
++.++++.-+.+. .++..|+.++..+....-.+. ..++|.++.+..++++.++..|...+..+....
T Consensus 10 l~~Il~~~~~~~~--------~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 10 LKNILELCLSSDD--------SVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 5566666665554 888888888888764221111 136789999999999999999999999998654
Q ss_pred hhhHHHHHhCCChHHHHHhhc---CC-CHHH---HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--------
Q 005088 239 DENKNQIVECNALPTLILMLR---SE-DSAI---HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------- 303 (715)
Q Consensus 239 ~~~~~~~~~~g~l~~L~~ll~---~~-~~~v---~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-------- 303 (715)
+..-..-... ++..-..+-. .+ .... ....+..+..+...+...+..+ +..++..+...
T Consensus 77 ~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~ 150 (187)
T PF12830_consen 77 ESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSES 150 (187)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhcccccccc
Confidence 4332221111 2333222221 11 1111 4445566666655544444443 45566555432
Q ss_pred ChHHHHHHHHHHHHHhc
Q 005088 304 CSESQREAALLLGQFAA 320 (715)
Q Consensus 304 ~~~~~~~a~~~L~~l~~ 320 (715)
...-.....++.-|++.
T Consensus 151 ~~~~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 151 SPSDLDFLLFLAENLAT 167 (187)
T ss_pred chhHHHHHHHHHHHHhc
Confidence 23334455566666654
No 363
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=43.87 E-value=3.5e+02 Score=27.09 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=85.9
Q ss_pred HHHHHhcCChHHHHhhhcCCCCcccccC--------CC---ccchHHHhhHHHHHHhhcCChhhHHHH------------
Q 005088 97 VNWIVEGGAVPALVKHLQAPPTSEADRN--------LK---PFEHEVEKGSAFALGLLAVKPEHQQLI------------ 153 (715)
Q Consensus 97 ~~~~~~~g~v~~L~~lL~~~~~~~~~~~--------~~---~~~~~v~~~a~~~L~~l~~~~~~~~~i------------ 153 (715)
...+.+.|.||.|-++.+.-....+..+ +. ..+..++.+-++.+.++++...+...+
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3567888999998887755322111000 00 112368999999999999633222111
Q ss_pred ----------HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCcc--chhHHHhcCCcHHHHHhhccC--
Q 005088 154 ----------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELLEFT-- 219 (715)
Q Consensus 154 ----------~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll~~~-- 219 (715)
-+.|.+..++..+.....+ ...+-+.+.++-.+..+.+. -+..+...|.++.++..+-++
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~------s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~ 155 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPID------SSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGC 155 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCc------hhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCcc
Confidence 1235666666666654332 25566777777777765554 344667788889988876543
Q ss_pred -CHHHHHHHHHHHHHHhcCChhh
Q 005088 220 -DTKVQRAAAGALRTLAFKNDEN 241 (715)
Q Consensus 220 -~~~v~~~a~~~L~~L~~~~~~~ 241 (715)
+..+....-..|+.|...+...
T Consensus 156 ~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 156 MSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred chHHHHHHHHHHHHHHHCCCHHH
Confidence 3467888888899888766443
No 364
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.61 E-value=2.8e+02 Score=31.22 Aligned_cols=79 Identities=22% Similarity=0.165 Sum_probs=60.2
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC-CCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhccccc
Q 005088 444 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLS 522 (715)
Q Consensus 444 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~~~ 522 (715)
...+++.|..+..++=+.++..++.++..|-. .++... +.+..|++-+.+++..+...|.-.|.+|....++..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce
Confidence 34467777777788888999999999999844 344322 346678888888888898899999999999888777
Q ss_pred ccCCC
Q 005088 523 SVDAA 527 (715)
Q Consensus 523 ~~~~~ 527 (715)
.++..
T Consensus 377 ~Vvi~ 381 (988)
T KOG2038|consen 377 IVVID 381 (988)
T ss_pred eehHH
Confidence 66533
No 365
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.11 E-value=2.7e+02 Score=30.84 Aligned_cols=233 Identities=17% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHhhhcc-----CChHHHHHHHHHHHHHhcCCcc
Q 005088 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSD 324 (715)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~ 324 (715)
++.+++.+++++++++..++..+......+......+.+ -.++..=...|.. .++..++..+.+|+.+|....+
T Consensus 50 LellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt~se 129 (878)
T KOG2005|consen 50 LELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMTMSE 129 (878)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHheeecc
Q ss_pred hhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC--
Q 005088 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-- 402 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 402 (715)
.... |---+..+..++..+.-.-+.+|+..-.+...+.+.=.. .-......+..++.....+
T Consensus 130 ~~~~---------l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~-------~~~dl~~l~~~iV~f~mkHNA 193 (878)
T KOG2005|consen 130 RGEH---------LAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAP-------SKADLLDLVQEIVPFHMKHNA 193 (878)
T ss_pred cchh---------eeeeeccccCChhhhHHHHHHHHHHHHHHHHhhcccccc-------chHHHHHHHHHHHHHHHhccc
Q ss_pred -CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHHHHHHhhcCCCccc
Q 005088 403 -EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQR 480 (715)
Q Consensus 403 -~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~ 480 (715)
.+....+.+-+.+..+.+-.......+.| ..+..-++++-.+ +..+.+.|..+...+...++.-
T Consensus 194 E~eAiDlL~Eve~id~l~~~Vd~~n~~Rvc--------------lYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al 259 (878)
T KOG2005|consen 194 EFEAIDLLMEVEGIDLLLDYVDEHNYQRVC--------------LYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRAL 259 (878)
T ss_pred hhHHHHHHHHhhhHhHHHHHhhhhhHHHHH--------------HHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHH
Q ss_pred hhhhcCCcHHHHHHHhcC-CCcchhhhhHHHHHH
Q 005088 481 TIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFK 513 (715)
Q Consensus 481 ~~~~~~~~i~~L~~ll~~-~~~~~~~~aa~~L~~ 513 (715)
......+-.+...+...+ .++..++..+-.|..
T Consensus 260 ~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR 293 (878)
T KOG2005|consen 260 VGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLAR 293 (878)
T ss_pred HHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHh
No 366
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=41.98 E-value=48 Score=19.43 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=19.5
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHcc
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR 168 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~ 168 (715)
.+|..|+++|+++. +++ +++.|+..+++
T Consensus 2 ~vR~~aa~aLg~~~-~~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG-DEE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC-CHh---------HHHHHHHHhcC
Confidence 68999999999984 333 25666666643
No 367
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.98 E-value=2.5e+02 Score=31.93 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHH
Q 005088 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~ 362 (715)
.+..|..++..|+.+....+...-.+.+..+++.|+..|.. .+..+...|+.+|..|.-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 35778899999999998888888889999999999999865 567777788777776653
No 368
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=40.97 E-value=4.6e+02 Score=27.69 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHHHHhccCccc-hhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 005088 178 VNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (715)
Q Consensus 178 ~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ 256 (715)
.|.=...+-..|..+....+.. .....+...+..|+.++.++|+.-|.....+|.++-......+..+.. .+...+.+
T Consensus 103 ~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~ 181 (409)
T PF01603_consen 103 SWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYR 181 (409)
T ss_dssp THHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHH
Confidence 3454555666666665422211 222344566778999999999999999999998887655555555543 35566666
Q ss_pred hhcCC-CHHHHHHHHHHHHHhhcCCh----hHHHHHHHcCChHHHHhhhccCC-hHHHHHHHHHHHHHhcCCcchhHHHh
Q 005088 257 MLRSE-DSAIHYEAVGVIGNLVHSSP----NIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIV 330 (715)
Q Consensus 257 ll~~~-~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (715)
.+... ...-...++.+++.+..+-. +....+. ...++.+..... ......-..++..++..++.....++
T Consensus 182 fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i 257 (409)
T PF01603_consen 182 FIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI 257 (409)
T ss_dssp HHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH
T ss_pred HhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 66543 44455667788888765422 1112222 233334444433 22234444455555444433322221
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHH--HHhcCChHHHHHhhccCChhHHHHHHHHHHh
Q 005088 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAG--IAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 398 (715)
Q Consensus 331 ~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~--l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 398 (715)
..++..=-..++.-...-+.-+..+.... ... -........+...+.|.+..|.+.|+....|
T Consensus 258 -----~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 258 -----KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp -----HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred -----HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 22222222223322222222333332211 111 0111233445566678888887777765544
No 369
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=40.88 E-value=1e+02 Score=31.65 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=55.0
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCc--chhhhHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC--SRAVNSVI 182 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~--~~~~~~~~ 182 (715)
.+|.++.++...-.... .. +..+....++.+..|..++...-...-+..+|.++.++-...-... ....|.++
T Consensus 211 LlPyf~~fI~~~v~~n~----~~-nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LR 285 (343)
T cd08050 211 LLPYFVRFIAEGVTVNL----DQ-NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALR 285 (343)
T ss_pred hhhHHHHHHHHHHHhhh----cc-cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHH
Confidence 47777777755321000 00 1266777888888888777766555555578888887744332111 23457999
Q ss_pred HHHHHHHHHHhcc
Q 005088 183 RRAADAITNLAHE 195 (715)
Q Consensus 183 ~~a~~~L~~L~~~ 195 (715)
+.|+.+|..+|..
T Consensus 286 d~AA~ll~~i~~~ 298 (343)
T cd08050 286 DYAARLLAQICRK 298 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999953
No 370
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.52 E-value=1.5e+02 Score=23.06 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=44.8
Q ss_pred hcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhh----ccCChhHHHHHHHHHH
Q 005088 331 QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 397 (715)
Q Consensus 331 ~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~ 397 (715)
+..++.++..++.+ .+.++|+..+.++.++.......+ . .|.+.+...+ .+.+..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i-~-SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI-K-SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH-H-hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44567888888644 789999999999999988774444 2 2455555555 4456667666666553
No 371
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.07 E-value=1.1e+02 Score=26.31 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHH
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L 315 (715)
.++...++.++......-+ ...+...+.++.+.+++.++ +.+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 6677777777777654322 24555566777777777443 3455555543
No 372
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=40.00 E-value=6.3e+02 Score=30.64 Aligned_cols=169 Identities=16% Similarity=0.148 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHH--hcCChHHHHHhhc
Q 005088 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIA--HNGGLVPLLKLLD 382 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~--~~~~l~~L~~ll~ 382 (715)
..+++.++++|+.+..+...... ...+..+.+++..+.++++.-.+..+.......+..+. -..+++..+.-|.
T Consensus 143 apVre~caq~L~~~l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788888888887653322211 23356777777777777776666555543331111111 1234566677778
Q ss_pred cCChhHHHHHHHHHHhccCCCchhhHHHhhcccccccc----chhh--------hhhhhhHHHHHHHHHHHH--HhhhhH
Q 005088 383 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD----GEFI--------VQATKDCVAKTLKRLEEK--IHGRVL 448 (715)
Q Consensus 383 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~----~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~l 448 (715)
+.+..++..|+..+.-...........--...+..+++ +... ....+.|...-+..+... ...+++
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lv 298 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLV 298 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccc
Confidence 88888888888888776543211111111112222222 1110 011122322211111111 135788
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 005088 449 NHLLYLMRVAEKGVQRRVALALAHLCSPD 477 (715)
Q Consensus 449 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 477 (715)
+++..++++.-..++..++..+..|....
T Consensus 299 p~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 299 PRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998899999999998885543
No 373
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.27 E-value=63 Score=28.12 Aligned_cols=27 Identities=44% Similarity=0.559 Sum_probs=17.4
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 335 VRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 335 l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
+..|+++|.++++.+...|+.+|.+..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 577888888878888888888887653
No 374
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.16 E-value=8.2e+02 Score=30.08 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=54.5
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 210 (715)
+++...+.++.++...+... .-+| -+.+.+.+++-.+. ..+-...+.+.+..+|.-++.+.-..-..-.-.+.+.
T Consensus 857 evr~~sl~~l~silet~ge~---ll~~-w~sV~eml~s~~d~-~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEH---LLHG-WQSVFEMLRSATDF-GSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccchh---hccc-cHHHHHHHHHHhhc-cchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 78888888888887332111 1122 55555555532111 0001126677777777777643222111122235566
Q ss_pred HHHHhhc-cCCHHHHHHHHHHHHHHh
Q 005088 211 PLVELLE-FTDTKVQRAAAGALRTLA 235 (715)
Q Consensus 211 ~L~~ll~-~~~~~v~~~a~~~L~~L~ 235 (715)
.+..+.+ ..|..+.-.|++.+++++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHH
Confidence 6666654 356677778888888887
No 375
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.95 E-value=2.5e+02 Score=24.25 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=56.3
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
++..|..-|++.++ .++..|+.+|-.+. .++.++..+.....+..|..++........ ..++
T Consensus 43 a~~~l~krl~~~~~------------~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~----~~Vk 106 (140)
T PF00790_consen 43 AARALRKRLKHGNP------------NVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPE----TPVK 106 (140)
T ss_dssp HHHHHHHHHTTSSH------------HHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHH----SHHH
T ss_pred HHHHHHHHHhCCCH------------HHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCch----hHHH
Confidence 35677788888777 99999999999999 457888888888889999998887654210 0278
Q ss_pred HHHHHHHHHHhc
Q 005088 183 RRAADAITNLAH 194 (715)
Q Consensus 183 ~~a~~~L~~L~~ 194 (715)
+.++..+.....
T Consensus 107 ~k~l~ll~~W~~ 118 (140)
T PF00790_consen 107 EKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777764
No 376
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.85 E-value=26 Score=20.20 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=17.6
Q ss_pred HHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHc
Q 005088 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (715)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~ 167 (715)
||..|+++|+++.+. + +++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~-~---------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP-R---------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH-H---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH-H---------HHHHHHHHhc
Confidence 577899999998752 2 3677776664
No 377
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=37.74 E-value=3.7e+02 Score=29.43 Aligned_cols=141 Identities=11% Similarity=0.062 Sum_probs=84.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccc
Q 005088 338 LIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 417 (715)
Q Consensus 338 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 417 (715)
+++-..+-++.+|..+...|+-....-..++....++...--.|.+.+..|+.....++..|+...++...+.+
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~------ 353 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRR------ 353 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHH------
Confidence 33444556777887777777665544455666666666666677889999999999999999876555442222
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhc
Q 005088 418 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 497 (715)
Q Consensus 418 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~ 497 (715)
.-.....++++++.....-||..+.+.++.+.... ..+...+-.+..++-
T Consensus 354 -------------------------f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg-----~L~~SeIlIvsscml 403 (740)
T COG5537 354 -------------------------FVERFKDRILEFLRTDSDCVRICSIKSLCYLRILG-----VLSSSEILIVSSCML 403 (740)
T ss_pred -------------------------HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc-----ccchhHHHHHHHHHh
Confidence 11124456666666654447888877777763221 112223444555566
Q ss_pred CCCcchhhhhHHHHHHh
Q 005088 498 STNPKQQLDGAVALFKL 514 (715)
Q Consensus 498 ~~~~~~~~~aa~~L~~L 514 (715)
+.+|+-+..-...+.++
T Consensus 404 Di~pd~r~~~~E~v~~i 420 (740)
T COG5537 404 DIIPDSRENIVESVESI 420 (740)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 65665333333333333
No 378
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.64 E-value=1.1e+02 Score=26.57 Aligned_cols=67 Identities=22% Similarity=0.207 Sum_probs=53.1
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhccC-Chh---HHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDSK-NGS---LQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~~-~~~---v~~~a~~~L~~l~ 400 (715)
++..|..-|.++++.++..|+..|-.++.+. ...+....++..|..++.++ ... |+..+...|...+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4577888889999999999999999888876 66667777888899888543 333 8888888887764
No 379
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.44 E-value=1.6e+02 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=32.1
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhc
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (715)
++..|..-|++.++ .|+..++++|..++ +++.++..+...
T Consensus 39 i~d~L~kRL~~~~~------------hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 39 LLEYLLKRLKRSSP------------HVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHhcCCCC------------cchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 46788888888777 89999999999999 666777666654
No 380
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=36.33 E-value=41 Score=35.11 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchh
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 691 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 691 (715)
+.++|++.++..|.+|..+.|++.|.+|+..+. ....+|..|++
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q 228 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQ 228 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 678999999999999999999999999998753 34445555555
No 381
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.24 E-value=3.4e+02 Score=24.79 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=49.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcch
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (715)
.++.++.-+...+...+--|...+..|.......+-.-+-..++..+-..|++.++++...++.+|..++...+..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 5666677666665556666666666665441111122222456777778888999999999999999996544433
No 382
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=36.20 E-value=29 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=11.7
Q ss_pred hHHHHHhhccCChhHHHHHHHH
Q 005088 374 LVPLLKLLDSKNGSLQHNAAFA 395 (715)
Q Consensus 374 l~~L~~ll~~~~~~v~~~a~~~ 395 (715)
...+...+.++++.||..|+.+
T Consensus 20 ~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 20 QSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHhcCCChHHHHHHHHH
Confidence 3444455555566666655543
No 383
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.45 E-value=7.4e+02 Score=28.19 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~ 259 (715)
+++..++.++..+....|+--. ..+..++.-+.+++..+...|...|.+|....|.-+..+ +..+.+++-
T Consensus 319 ~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer~~F 388 (988)
T KOG2038|consen 319 EVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV-----IDEIERLAF 388 (988)
T ss_pred HHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHHHHc
Confidence 7777777777777654544322 334567777777777777777777777776555443333 233444444
Q ss_pred CC--CHHHHHHHHHHHHHhh
Q 005088 260 SE--DSAIHYEAVGVIGNLV 277 (715)
Q Consensus 260 ~~--~~~v~~~a~~~L~~L~ 277 (715)
.+ +......|+.+|.++.
T Consensus 389 Rpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 389 RPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred ccCccccceeehhhhhhhhH
Confidence 33 3344556666666664
No 384
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=34.12 E-value=4.9e+02 Score=26.04 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhcCChhhH---------------------HHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhc
Q 005088 222 KVQRAAAGALRTLAFKNDENK---------------------NQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~---------------------~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 278 (715)
.++..-++.+-+++..++... ..-.+.|.+..+++.+..+ +...+-+.+.++-....
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 466777788888875321111 0112346677777766653 66778888888888877
Q ss_pred CChh--HHHHHHHcCChHHHHhhhccCC---hHHHHHHHHHHHHHhcCCcc
Q 005088 279 SSPN--IKKEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSD 324 (715)
Q Consensus 279 ~~~~--~~~~~~~~g~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~ 324 (715)
+... .+..+.+.|+++.++..+-++. .++....-..|+.+...+..
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHH
Confidence 6554 3446678999999998876543 45666677788888866543
No 385
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=33.49 E-value=4.3e+02 Score=28.95 Aligned_cols=140 Identities=11% Similarity=0.000 Sum_probs=87.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchh--HHHhh
Q 005088 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIVQ 331 (715)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~ 331 (715)
+++-..+-++.+|..+...|+--....|+. +.+..++...--.|.+.+..++.....++..++...+... ....
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~- 355 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV- 355 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH-
Confidence 334445567888888888888776555543 3444467777777888889999999999999998766543 1122
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 332 ~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
..+...+++++..+..-||..+...+..+.... ..+...+..+..++-+..+.-+..-...+.++|
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg---~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRILG---VLSSSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc---ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 345567777776655558888888877665433 122223344445555555553444444444443
No 386
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.23 E-value=3.3e+02 Score=28.13 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=74.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHH
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (715)
-+..|+.-+++.+..++..|+..|..+..+.+... ..-...+++.+..++.+.+..+|.....++-++...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 35667788889999999999999988866544432 22224467777777788888888887777777543221111111
Q ss_pred hhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 330 ~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
.-.=+++.+...+.+..+.+|.-+...|.-+....
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 11223455555566778888888887777666544
No 387
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=32.13 E-value=4.5e+02 Score=25.01 Aligned_cols=134 Identities=15% Similarity=0.092 Sum_probs=86.1
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCC----------cchhhhHHHHHHHHHHHHHhccCccch
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIK 200 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~----------~~~~~~~~~~~a~~~L~~L~~~~~~~~ 200 (715)
.....++..+..|...++....+...+.++.+.+.|...++.. ..+....+-..=...|+.++. ++...
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~~Gl 157 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TPNGL 157 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-ChhHH
Confidence 4555677777777777887778788999999999998763211 011122333444456777765 55555
Q ss_pred hHHHhcCCcHHHHHhhccCCH-HHHHHHHHHHHHHhcCChhhHHHHHhCCCh-HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 201 TRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNAL-PTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 201 ~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l-~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
..+-..+....+..++..++. .+.. -+|.+|=...+ |.. ..|-+.|.+++..+|..|...|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~~l~k---lil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRDDLLK---LILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchHHHHH---HHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 666777888888888876532 2222 34455533222 222 23446788899999999999998774
No 388
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=31.93 E-value=1.9e+02 Score=29.51 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcC--ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhH
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~ 150 (715)
++..|+..+..+..++.....+...+ .+.-|+++++.... .+..++..|+.+|..++ ......
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~---------v~~~i~~~Al~~L~ai~~~~~~~~ 303 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK---------VPMDIQTAALRALEAISHKRPRCS 303 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHHhccccHH
Confidence 34445555555555666667777766 99999999987764 34589999999999999 444433
No 389
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.52 E-value=2.9e+02 Score=31.93 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhccCcc-chhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 180 SVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.+......+|..++.-++. ....+.+.+....++.++-+++.++...|...|..... .. |-.+.+-.++
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d--~~--------~R~e~i~~ll 565 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD--VD--------GRLEAIQALL 565 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc--CC--------cHHHHHHHHH
Confidence 6677788888888865554 44555567888999999999999999999999998883 22 2234444555
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 005088 259 RSEDSAIHYEAVGVIGNL 276 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L 276 (715)
++.-........+.|..+
T Consensus 566 ~~~~~~tL~ai~~~l~~~ 583 (727)
T PF12726_consen 566 QSNFSPTLSAINWSLRQL 583 (727)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 554444455555555555
No 390
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.47 E-value=5.3e+02 Score=29.77 Aligned_cols=142 Identities=20% Similarity=0.174 Sum_probs=81.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
..+...+..+++.+....+.++.+++.-..-.... ...-++.-..-....-..+......+|..++.-.++....+..
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 34444555566666666666666666311100000 1111111112222222356667788888888777776666654
Q ss_pred -cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHH
Q 005088 290 -AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 290 -~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~ 363 (715)
.+....++.++-+++.++...|...+..... .. |-...+-.+++..-...-....++|..+...
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d--~~--------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD--VD--------GRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhc--CC--------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 6788899999999999999999999998863 22 2234444555443344444555556555543
No 391
>PHA02713 hypothetical protein; Provisional
Probab=31.44 E-value=59 Score=36.00 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.6
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 644 DISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 644 ~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
.++.+|+..++..|..++.+.|++.|.+|+..+
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999864
No 392
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.57 E-value=1.2e+03 Score=29.28 Aligned_cols=196 Identities=12% Similarity=0.054 Sum_probs=115.5
Q ss_pred hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhH-HHHHhcCChHHHHHHHccccCC
Q 005088 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDS 172 (715)
Q Consensus 94 ~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~i~~~~~l~~L~~lL~~~~~~ 172 (715)
...+..+++.|....+..-+++.++ .++..|.+++....++-+.. +.....-.+..++.+.+.....
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~------------~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e 1496 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDP------------SMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRE 1496 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
Confidence 3444477888988888888888777 99999999888877555542 3333333455666666555444
Q ss_pred CcchhhhHHHHHHHHHHHHHhccC-ccch---------hHHHhcCCcHHHHHhhccCCHH---HHHHHHHHHHHHhcCCh
Q 005088 173 NCSRAVNSVIRRAADAITNLAHEN-SSIK---------TRVRMEGGIPPLVELLEFTDTK---VQRAAAGALRTLAFKND 239 (715)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~-~~~~---------~~~~~~g~i~~L~~ll~~~~~~---v~~~a~~~L~~L~~~~~ 239 (715)
+..+... +...-..-...++... .... ....+-.++|.+-.++.+..++ .|......+..... +.
T Consensus 1497 ~~~Rl~s-i~alF~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glk-s~ 1574 (1758)
T KOG1791|consen 1497 SDPRLIS-ICALFIAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLK-SC 1574 (1758)
T ss_pred CCcchhh-HHHHHHHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhc-Cc
Confidence 3332111 1111111122222211 1111 1233445677777777654433 45555555554443 34
Q ss_pred hhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC
Q 005088 240 ENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (715)
Q Consensus 240 ~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 303 (715)
.........+....++....++ +...+...+.+|++-..-.......+-..|....+..++.+.
T Consensus 1575 ~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1575 PDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred hhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Confidence 4455556667788888888775 667777888888887655444445555678889999998875
No 393
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=29.83 E-value=1.3e+02 Score=31.79 Aligned_cols=69 Identities=29% Similarity=0.304 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCC-cHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 448 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG-GLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 448 l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
...+-.+....+++++.+|..++.+++..-++|....... .-..+++++..+.+++-+.++.|+..+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3444444556699999999999999999888877765554 44567788888999999999999988875
No 394
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.54 E-value=6.1e+02 Score=28.87 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC-ChHHHHHHHHHHHHHhc
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAA 320 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~ 320 (715)
.+..|..++..|+.+....+.....+.+..+++.|+.+|... +..+...|+.+|.-+.-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 456789999999999988888888888999999999998754 56666667766666653
No 395
>PHA03098 kelch-like protein; Provisional
Probab=29.53 E-value=1.1e+02 Score=33.74 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+|+.+++..|..++.+.|++.|.+|+..+
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999864
No 396
>PRK09169 hypothetical protein; Validated
Probab=29.09 E-value=1.5e+03 Score=29.95 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=14.0
Q ss_pred HHHhhHHHHHHhhcCChhhHHH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQL 152 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~ 152 (715)
.-...++++|++..+.+.++..
T Consensus 289 Q~vAN~LNALSKwp~~~~cr~a 310 (2316)
T PRK09169 289 QGVANALNALSKWPDTEACRQA 310 (2316)
T ss_pred HHHHHHHHHHHhCCCchHHHHH
Confidence 4445677777777666666544
No 397
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=27.94 E-value=1.3e+03 Score=29.08 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=57.1
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChH
Q 005088 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (715)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 336 (715)
++.+.++.++..+......+....+.. ....++..|+..+.++...-...|+.+|..++..++...... ...+.
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~ 516 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLK 516 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 446678888888777777776554331 122356777777766665455678889988886444332221 22344
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHhHHHH
Q 005088 337 PLIEMLQSPD-VQLREMSAFALGRLAQVI 364 (715)
Q Consensus 337 ~L~~~L~~~~-~~v~~~a~~~L~~l~~~~ 364 (715)
.+++.+.+-+ ..+| .....|+.++...
T Consensus 517 giLD~l~~Ls~~qiR-~lf~il~~La~~~ 544 (1426)
T PF14631_consen 517 GILDYLDNLSLQQIR-KLFDILCTLAFSD 544 (1426)
T ss_dssp GGGGGGGG--HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHH-HHHHHHHHHhcCC
Confidence 4555555533 3444 4567777777554
No 398
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.76 E-value=1.5e+02 Score=24.64 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=31.6
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHh
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (715)
+++.|+.-|.+++. +|...|+.+|...|.++.+.+.++.
T Consensus 9 ~i~lLv~QL~D~~~------------~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSP------------EVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCH------------HHHHHHHHHHHHHHhchhhHHHHHH
Confidence 58889999998888 9999999999999955566555554
No 399
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=27.18 E-value=6e+02 Score=24.88 Aligned_cols=183 Identities=16% Similarity=0.090 Sum_probs=88.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHH
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (715)
.++-|.+.++.+++.-+ .+.++++.. .+++..++|.|...-. ++++...++..|.+++. |-.
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~lg~~---------~iv~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~--P~~---- 75 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQLGEW---------NIVQKDLIPILISYKD--DDKLFLACLRLLVNLTW--PIE---- 75 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHHHHHh---------chhhhhHHHHHHhccC--chHHHHHHHHHHHHhCC--CHH----
Confidence 45566677766655444 444444432 2234455665554433 46777778888888863 111
Q ss_pred hhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhc-----------cCChhHHHHHHHHH
Q 005088 330 VQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLD-----------SKNGSLQHNAAFAL 396 (715)
Q Consensus 330 ~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~-----------~~~~~v~~~a~~~L 396 (715)
+- ... .+...+.........+ ...++.+.+.+++..+++.+. ..+..+...++..+
T Consensus 76 ---------~~-~~~~~~~~~~~~~~~~l~~~l-~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~Li 144 (266)
T PF04821_consen 76 ---------LL-VESQPKDKNQRRNIPELLKYL-QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLI 144 (266)
T ss_pred ---------Hh-ccCCCCChHHHHHHHHHHHHH-HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHH
Confidence 00 110 1111221211111111 112445555555555555441 12456778888999
Q ss_pred HhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hhhHHHHHHHHHHhhcC
Q 005088 397 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCS 475 (715)
Q Consensus 397 ~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 475 (715)
+|+..-++....-...+ .-..-.-.-+..+...+++..|+.+..+. ..+-....+.++..+..
T Consensus 145 RNlL~Ip~~~~~~~~~~----------------~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k 208 (266)
T PF04821_consen 145 RNLLAIPDPPSASKRSD----------------EDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFK 208 (266)
T ss_pred HHHhcCCCCcccccccc----------------hhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHc
Confidence 99865433221111100 00000112233445677888888887776 33344456666666654
Q ss_pred CC
Q 005088 476 PD 477 (715)
Q Consensus 476 ~~ 477 (715)
+.
T Consensus 209 ~~ 210 (266)
T PF04821_consen 209 GQ 210 (266)
T ss_pred CC
Confidence 43
No 400
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.64 E-value=6.8e+02 Score=25.27 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhC-----------CChHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChh
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVEC-----------NALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-----------g~l~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
...+|.+|+.++.....+|++.+..++.. .....|+..|- +.|+--.-.|+.+|..+..++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 46889999999999998888888877541 11112444443 22444455678888888888887
Q ss_pred HHHHHHHc--C----------ChHHHHhhhcc-----CChHHHHHHHHHHHHHhcCCcchhHHHhhc-CChHHHHHHhCC
Q 005088 283 IKKEVLAA--G----------ALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS 344 (715)
Q Consensus 283 ~~~~~~~~--g----------~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~L~~ 344 (715)
.+.....- | .++.+..+|.. .++.++..-+..|..-..+++.....++.. +.++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 76655432 1 35556655543 245555555556666556777776666654 578888887633
Q ss_pred ---CCHHHHHHHHHHHHHhHH
Q 005088 345 ---PDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 345 ---~~~~v~~~a~~~L~~l~~ 362 (715)
.+.-|+--++..|+-+..
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 456677666666666554
No 401
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.12 E-value=3.1e+02 Score=29.30 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=80.1
Q ss_pred ChHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHH----HHHHHHHhcC
Q 005088 250 ALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA----ALLLGQFAAT 321 (715)
Q Consensus 250 ~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a----~~~L~~l~~~ 321 (715)
+...|..+|... +++++...+.+|.-|-.. ..+....++..++.++..++...|.-+ ...+.|+-..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk-----~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~ 91 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNK-----NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK 91 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc-----CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh
Confidence 445566666543 789999999998887322 223334467778888887776665443 4455555322
Q ss_pred CcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
....... ...=..+..+|..+++. .|.|++..+..-. +..+.++..+..+...--+.++.|...++..+..-
T Consensus 92 ~kn~kln---kslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~ 164 (616)
T KOG2229|consen 92 HKNDKLN---KSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGA 164 (616)
T ss_pred cccchHH---HHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccC
Confidence 2111111 11123556777777766 4445555444444 44444556666666655667777777766665543
No 402
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.58 E-value=94 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=28.4
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHh
Q 005088 373 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 411 (715)
Q Consensus 373 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 411 (715)
+++.|++-|.++++.|...|..+|...+..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 567777888888888888888888888766654444443
No 403
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.55 E-value=3.4e+02 Score=23.52 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=52.5
Q ss_pred ChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHH-HHHhhcc---CChhHHHHHHHHHHhccC
Q 005088 334 AVRPLIEMLQS-PDVQLREMSAFALGRLAQVI----TAGIAHNGGLVP-LLKLLDS---KNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 334 ~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~-L~~ll~~---~~~~v~~~a~~~L~~l~~ 401 (715)
++..|..-|.+ .++.++..|+..|-.++.+. ...+...+++.. |++++.. .+..|+..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45677777764 68889888988888888777 667777888987 8999853 345889999998888763
No 404
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=25.21 E-value=2.2e+02 Score=34.17 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=62.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHH-HHHHHhcCCcchhHH
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVH 328 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~ 328 (715)
.++.+..++.+.+..++..++++++.++.......-.. ++..++.++.+.+.-+++.++. .+..++..... ...
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~----v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~-~l~ 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMAT----VINGFLPLLGDLDKFVRRQGADELIELLDAVLMV-GLV 891 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcc-ccc
Confidence 46777778888899999999999999865432222222 3444455555544444444443 33333321110 000
Q ss_pred HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
-...=++++|+..+.+....+|..+..+.+.+.
T Consensus 892 ~~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 892 PYNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ccceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 111224567777777788888988888887664
No 405
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.51 E-value=2.1e+02 Score=33.19 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=64.3
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
.+..-..+|.+.+-.+|..++.+|..-.- ....+.-.-.-....+.++..+...++-+...|+.+|.+++....+...
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 34445566777888888888888764321 0112221122235678889999999999999999999999887766655
Q ss_pred HHHHcCChHHHHhhhcc
Q 005088 286 EVLAAGALQPVIGLLSS 302 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~ 302 (715)
.-+-..++|.+-+++.+
T Consensus 884 sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54555677777766654
No 406
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.45 E-value=3.4e+02 Score=27.89 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=56.9
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhccC
Q 005088 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 333 ~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 401 (715)
.++..+.+-|...++.|...|+..+..++.+. +..+....+...|..++. +.++.|+......+.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 45788888999999999999999999888877 777778888888888887 6778888877777777653
No 407
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=24.30 E-value=2.2e+02 Score=24.95 Aligned_cols=124 Identities=12% Similarity=0.167 Sum_probs=79.7
Q ss_pred hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc---CChhhHHHHHhcCChHHHHHHHcccc
Q 005088 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHM 170 (715)
Q Consensus 94 ~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~~i~~~~~l~~L~~lL~~~~ 170 (715)
++.=+.+.+...+..++++++.... ..++.+.+.++.-+. .++..--.++..+.+..++..--+.+
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~-----------~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~ 84 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRS-----------SSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS 84 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC
Confidence 5566778888899999999988332 288888888888877 34444445556666776666543333
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhc-cCccchhHHHh--cCCcHHH---HHhhccCCHHHHHHHHHHHHHHh
Q 005088 171 DSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRM--EGGIPPL---VELLEFTDTKVQRAAAGALRTLA 235 (715)
Q Consensus 171 ~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~--~g~i~~L---~~ll~~~~~~v~~~a~~~L~~L~ 235 (715)
++ ++...=+..|..++. -++..-..+.. .+-.|.+ +++..+++.-+|.++-.++.++.
T Consensus 85 ~e-------e~l~yYIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 85 DE-------EVLSYYISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred cc-------hhHHHHHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 32 888888888888883 23333233332 2344544 45566777777776666665553
No 408
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.21 E-value=1.7e+03 Score=30.83 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC-CccchhhhcCCcHHHHHHHhcCCC
Q 005088 444 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTN 500 (715)
Q Consensus 444 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~ 500 (715)
...++..+.+-|.+..+++...+..++.+.... ...-+...+.+.-|.|.++-...+
T Consensus 1275 r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~ 1332 (3550)
T KOG0889|consen 1275 REKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN 1332 (3550)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh
Confidence 345677788888888999999999888887544 555555566666677777665544
No 409
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.55 E-value=1.1e+03 Score=26.55 Aligned_cols=249 Identities=18% Similarity=0.145 Sum_probs=0.0
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC-hHHHHHHHHHHHHHhcCCcchhHH
Q 005088 251 LPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVH 328 (715)
Q Consensus 251 l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~ 328 (715)
++.+++-|... |+..|..|=.+|..+ ..+++. +....-++..++ +--..-|+.+|..+.+... -...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~-s~spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl 75 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAEL-SESPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPL 75 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-ccCHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcH
Q ss_pred HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---------HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---------TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
...-++-..++..+..+.|...-....+|..+-..- +....-.+.+..+.+.++..+.+-..-++.+|..|
T Consensus 76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHH
Q ss_pred cCCCchhhHHHhhcccccccc-----chhhhhhhhhHHHHHHHHHHHHH--------hhhhHHHHHHHHhhh-----hhh
Q 005088 400 ADNEDNVADFIRVGGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKI--------HGRVLNHLLYLMRVA-----EKG 461 (715)
Q Consensus 400 ~~~~~~~~~l~~~~~i~~L~~-----~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~L~~ll~~~-----~~~ 461 (715)
. ..+-..++..+..+ ..+.-.+..+...-+++.+.... +.+.+..++++-... --.
T Consensus 156 v------qemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 156 V------QEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred H------HHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Q ss_pred HHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 462 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 462 v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
.-.....-+++.-..-..|..+.+...++....+..+-.++.-..|..+|.++++
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlAS 284 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLAS 284 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHH
No 410
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.52 E-value=4.5e+02 Score=22.16 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=34.2
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCc
Q 005088 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (715)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (715)
..-|.+++..++..... ++..|..-|++.++.|+..++.+|..+|...+
T Consensus 22 ~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 22 YEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 33455555554443333 46778888888889999999999999987544
No 411
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.22 E-value=6e+02 Score=23.52 Aligned_cols=139 Identities=15% Similarity=0.080 Sum_probs=83.8
Q ss_pred HHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHH
Q 005088 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (715)
Q Consensus 108 ~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (715)
.+..++.+... +.+..|+.++.... .+++ .++.+-..+...+. |++....
T Consensus 55 l~~~L~~~~~~------------E~~~la~~il~~~~~~~~~~---------~~~~~~~~~~~~~~-------W~~~D~~ 106 (213)
T PF08713_consen 55 LADELWESGYR------------EERYLALLILDKRRKKLTEE---------DLELLEKWLPDIDN-------WATCDSL 106 (213)
T ss_dssp HHHHHHCSSCH------------HHHHHHHHHHHHCGGG--HH---------HHHHHHHCCCCCCC-------HHHHHHH
T ss_pred HHHHHcCCchH------------HHHHHHHHHhHHHhhhhhHH---------HHHHHHHHhccCCc-------chhhhHH
Confidence 44456666555 77777877776544 1111 24445555554333 4555555
Q ss_pred -HHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHH
Q 005088 186 -ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (715)
Q Consensus 186 -~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~ 264 (715)
..++..+.... ....+.+...+.++++-+++.++.++...... .... ..+..+...+.+++.-
T Consensus 107 ~~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~ 170 (213)
T PF08713_consen 107 CSKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYY 170 (213)
T ss_dssp THHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HH
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHH
Confidence 33445543211 23456778888899999998888777666543 1111 1344455567778999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHc
Q 005088 265 IHYEAVGVIGNLVHSSPNIKKEVLAA 290 (715)
Q Consensus 265 v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (715)
++....|+|..++..+++.....+..
T Consensus 171 vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 171 VQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999998888765555443
No 412
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.22 E-value=7.8e+02 Score=26.62 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH----------------HHHHHhcCChHHHHHhhc-cCChhHH
Q 005088 328 HIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI----------------TAGIAHNGGLVPLLKLLD-SKNGSLQ 389 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~----------------~~~l~~~~~l~~L~~ll~-~~~~~v~ 389 (715)
-+.+.++++.|+..|.. .++.++.+|+..|+.+..-+ ...+.....+..|++.+- +......
T Consensus 57 wL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~l 136 (475)
T PF04499_consen 57 WLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSL 136 (475)
T ss_pred HHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchH
Confidence 34568999999999964 67889999999998887654 233445556666666553 2334555
Q ss_pred HHHHHHHHhccC
Q 005088 390 HNAAFALYGLAD 401 (715)
Q Consensus 390 ~~a~~~L~~l~~ 401 (715)
..++.++..|.+
T Consensus 137 vn~v~IlieLIR 148 (475)
T PF04499_consen 137 VNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 413
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.14 E-value=3.5e+02 Score=22.26 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=46.0
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
++..|..-|.+.++ .++..|+.+|-.+. .++.+...+.....+..++.+..... ........++
T Consensus 38 ~~~~l~kRl~~~~~------------~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~--~~~~~~~~Vr 103 (115)
T cd00197 38 AVDAIKKRINNKNP------------HVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL--LGDDVSTNVR 103 (115)
T ss_pred HHHHHHHHhcCCcH------------HHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc--ccCCCChHHH
Confidence 35566666666655 89999999999999 66778777777665555554311110 0011123777
Q ss_pred HHHHHHHHHH
Q 005088 183 RRAADAITNL 192 (715)
Q Consensus 183 ~~a~~~L~~L 192 (715)
..+..++...
T Consensus 104 ~k~~~l~~~w 113 (115)
T cd00197 104 EKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 414
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.65 E-value=2e+02 Score=22.42 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=42.1
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc----cCCHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAG 229 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~ 229 (715)
.+...+.++..++...... ++++..+.|+.++...... . . ..|++.+...+. ++++.+...|..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~-------~vre~il~ci~qil~~~~~---~-i-~SGW~~if~il~~aa~~~~e~lv~~af~ 81 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSI-------DVRELILECILQILQSRGE---N-I-KSGWKVIFSILRAAAKDNDESLVRLAFQ 81 (86)
T ss_pred HHHHHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHhHH---H-H-HhccHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3445677888887655442 9999999999999853332 1 2 245777777664 345666666655
Q ss_pred HH
Q 005088 230 AL 231 (715)
Q Consensus 230 ~L 231 (715)
++
T Consensus 82 ~~ 83 (86)
T PF09324_consen 82 IV 83 (86)
T ss_pred HH
Confidence 44
No 415
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=22.63 E-value=9.6e+02 Score=25.64 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHhcCCcch-hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHh--cCChHHHHHh
Q 005088 305 SESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAH--NGGLVPLLKL 380 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~--~~~l~~L~~l 380 (715)
...|..++.+|+.+++.-+.. ...+. -+.|+..|++....-|..++-+|...+... ...... ....+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 356777888999988653222 12121 126888899888888888888888888776 111111 2334556666
Q ss_pred hccC
Q 005088 381 LDSK 384 (715)
Q Consensus 381 l~~~ 384 (715)
|..+
T Consensus 177 L~~~ 180 (441)
T PF12054_consen 177 LENP 180 (441)
T ss_pred HcCC
Confidence 6533
No 416
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.93 E-value=7e+02 Score=23.76 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccC-CCccc-----hHHHhhHHHHHHhhcCChhhH
Q 005088 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN-LKPFE-----HEVEKGSAFALGLLAVKPEHQ 150 (715)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~-~~~~~-----~~v~~~a~~~L~~l~~~~~~~ 150 (715)
+....-++..+..+..+++....+...+.++-+.+.|..-++...... ..-++ ..+-..=...++.++.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 445566788888888887777777789999999988877633111110 01111 123334456788888888888
Q ss_pred HHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcH-HHHHhhccCCHHHHHHHHH
Q 005088 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP-PLVELLEFTDTKVQRAAAG 229 (715)
Q Consensus 151 ~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~-~L~~ll~~~~~~v~~~a~~ 229 (715)
..+-+.++...+..+....+.+ ++.. -++.++=...+ |... .|-+.|..++..+|..|..
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~-------~l~k---lil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~ 218 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRD-------DLLK---LILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATK 218 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchH-------HHHH---HHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8889999999999999876431 3333 24444422111 2222 3456777888999999999
Q ss_pred HHHHHh
Q 005088 230 ALRTLA 235 (715)
Q Consensus 230 ~L~~L~ 235 (715)
.|+.+.
T Consensus 219 ~L~~ll 224 (226)
T PF14666_consen 219 HLRVLL 224 (226)
T ss_pred HHHHHh
Confidence 888775
No 417
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=8e+02 Score=25.48 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=71.4
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
+.-|+..+++.+..++..|+.-|..+....+..... .-..+++.+..+..+.+..+|.....++-.+............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 456777888999999999999988887643433221 1234667777778888888998888888776432211111111
Q ss_pred HcCChHHHHhhhccCChHHHHHHHHHHHHHhcCC
Q 005088 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (715)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (715)
-.=+.+.+...+.+..++++..++..+.-+....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1112344444445566888888888777776543
No 418
>KOG3788 consensus Predicted divalent cation transporter [Inorganic ion transport and metabolism]
Probab=21.48 E-value=3.5e+02 Score=27.98 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=57.6
Q ss_pred hccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhChhhHHHHHH---HHHHhc
Q 005088 568 ASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE---YTIAQD 644 (715)
Q Consensus 568 ~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~L~~~~~---~~l~~~ 644 (715)
.+++ +++.|.+++.....+..-+--++.+.+-.++-++.+|..........-++..|...|+.-|.-.|+ +++++.
T Consensus 320 ~~~~-~r~ff~~~~~s~sArvLlllsVPg~l~F~~ii~~m~~~~~~~t~~F~i~y~l~~liQVtiLLyia~~iV~~~W~~ 398 (441)
T KOG3788|consen 320 PRWP-WRAFFSPEVNSRSARVLLLLSVPGHLIFLFIIALMKGGHTTNTYEFTILYLLAALIQVTILLYIAQVIVHALWKR 398 (441)
T ss_pred cccc-hhhhcCCCccchhHHHHHHHHhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555 677777665444444444455666665555555555433322333344556666677776666554 455554
Q ss_pred -CChhh-HHHHHHHHHHcCcHHHHHHHHHHH
Q 005088 645 -ISLEN-VSSMYELSEAFHAISLRHTCILYI 673 (715)
Q Consensus 645 -i~~~~-~~~~~~~a~~~~~~~L~~~~~~~i 673 (715)
+|||| ++.+++-+...--..|.-.+..+.
T Consensus 399 ~iDPDn~aIPyLTalgDllGt~lL~l~f~~l 429 (441)
T KOG3788|consen 399 GIDPDNSAIPYLTALGDLLGTGLLALLFLSL 429 (441)
T ss_pred cCCCCccchHHHHHHHHHHhhHHHHHHHHHH
Confidence 89988 566666554443344444444433
No 419
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.91 E-value=3.9e+02 Score=28.87 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=31.4
Q ss_pred hhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC
Q 005088 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196 (715)
Q Consensus 148 ~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~ 196 (715)
.....+.+.+.++.|+.+|....+ .+++..|+.+|..+...+
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~-------~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYS-------SDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHHHHh
Confidence 344555678999999999975444 388899999888887533
No 420
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=20.51 E-value=1.5e+02 Score=25.86 Aligned_cols=27 Identities=41% Similarity=0.352 Sum_probs=18.2
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHh
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFA 319 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (715)
+..|+.+|.+.+.++...|+.+|.+..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 677888887777888888888888754
No 421
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.44 E-value=2.1e+02 Score=22.69 Aligned_cols=64 Identities=11% Similarity=-0.037 Sum_probs=0.0
Q ss_pred cCCC-ccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHH
Q 005088 123 RNLK-PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (715)
Q Consensus 123 ~~~~-~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (715)
..|. ..++.+|..|+..|..++..-.....-....++..+.+.+.++... ......|+..|..+
T Consensus 12 ~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~------~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 12 SRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKP------LGTHYGAIVGLSAL 76 (92)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHH
Done!