Query 005088
Match_columns 715
No_of_seqs 511 out of 4136
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 2.8E-38 9.7E-43 344.9 29.9 398 58-513 77-494 (529)
2 3ul1_B Importin subunit alpha- 100.0 3.5E-38 1.2E-42 342.0 29.9 398 58-513 58-475 (510)
3 4b8j_A Importin subunit alpha- 100.0 1.5E-36 5.3E-41 332.8 33.1 402 57-518 74-498 (528)
4 3now_A UNC-45 protein, SD10334 100.0 5.5E-36 1.9E-40 329.6 30.2 440 50-517 239-738 (810)
5 1wa5_B Importin alpha subunit; 100.0 5.2E-35 1.8E-39 320.5 36.4 402 58-518 88-512 (530)
6 3ul1_B Importin subunit alpha- 100.0 5.9E-35 2E-39 316.6 36.0 373 57-475 100-478 (510)
7 3tpo_A Importin subunit alpha- 100.0 7.7E-35 2.6E-39 317.7 36.2 366 56-474 118-496 (529)
8 3now_A UNC-45 protein, SD10334 100.0 1.1E-35 3.6E-40 327.4 28.3 432 57-517 290-783 (810)
9 1jdh_A Beta-catenin; beta-cate 100.0 6E-35 2E-39 321.1 31.9 430 57-515 59-529 (529)
10 2z6h_A Catenin beta-1, beta-ca 100.0 3.4E-34 1.2E-38 320.9 36.4 434 58-518 15-529 (644)
11 3nmz_A APC variant protein; pr 100.0 7.5E-35 2.6E-39 304.1 28.4 362 82-477 48-452 (458)
12 3l6x_A Catenin delta-1; cateni 100.0 8.8E-35 3E-39 309.8 28.8 366 101-522 45-482 (584)
13 3l6x_A Catenin delta-1; cateni 100.0 2.8E-34 9.7E-39 305.9 28.9 371 58-488 49-489 (584)
14 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-33 5.7E-38 309.6 35.6 432 56-517 16-490 (529)
15 2z6g_A B-catenin; FULL-length, 100.0 3.4E-34 1.2E-38 325.3 30.8 433 58-519 193-666 (780)
16 2jdq_A Importin alpha-1 subuni 100.0 7.8E-34 2.7E-38 305.5 29.0 399 59-517 22-444 (450)
17 3nmz_A APC variant protein; pr 100.0 1.1E-33 3.6E-38 295.5 25.9 365 105-518 33-452 (458)
18 1xm9_A Plakophilin 1; armadill 100.0 1.7E-33 6E-38 300.1 27.9 358 105-519 3-452 (457)
19 1xm9_A Plakophilin 1; armadill 100.0 4.1E-33 1.4E-37 297.3 29.4 361 59-481 4-455 (457)
20 2z6g_A B-catenin; FULL-length, 100.0 4.7E-32 1.6E-36 307.8 36.7 432 56-517 149-623 (780)
21 4b8j_A Importin subunit alpha- 100.0 1E-31 3.5E-36 294.5 36.3 374 59-478 119-499 (528)
22 1wa5_B Importin alpha subunit; 100.0 2.2E-31 7.4E-36 291.8 36.3 374 63-478 132-513 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 6.6E-31 2.3E-35 282.6 36.5 375 57-477 64-445 (450)
24 2z6h_A Catenin beta-1, beta-ca 100.0 1.1E-30 3.8E-35 292.5 26.4 393 100-513 10-420 (644)
25 3nmw_A APC variant protein; AR 100.0 5.3E-30 1.8E-34 260.0 24.2 279 125-404 42-337 (354)
26 3nmw_A APC variant protein; AR 100.0 3.6E-30 1.2E-34 261.3 20.7 278 78-364 47-336 (354)
27 3htm_A Speckle-type POZ protei 99.9 2E-27 6.8E-32 217.8 15.0 149 537-685 24-172 (172)
28 3hve_A Gigaxonin; ubiquitin, c 99.9 2.5E-27 8.6E-32 231.6 16.1 160 539-698 23-184 (256)
29 4hxt_A De novo protein OR329; 99.9 1.7E-25 5.7E-30 220.0 24.2 241 104-364 2-243 (252)
30 3i3n_A Kelch-like protein 11; 99.9 7.3E-27 2.5E-31 231.3 12.9 160 539-698 24-192 (279)
31 4hxt_A De novo protein OR329; 99.9 4.9E-25 1.7E-29 216.7 23.4 240 157-404 2-244 (252)
32 4db8_A Armadillo-repeat protei 99.9 7.1E-25 2.4E-29 215.5 22.0 239 104-362 12-251 (252)
33 4db8_A Armadillo-repeat protei 99.9 1.6E-24 5.3E-29 213.0 22.8 237 157-401 12-251 (252)
34 3hqi_A Speckle-type POZ protei 99.9 1.3E-24 4.4E-29 219.4 16.6 148 538-685 165-312 (312)
35 3opb_A SWI5-dependent HO expre 99.9 2.2E-23 7.6E-28 224.6 24.3 386 77-517 270-729 (778)
36 3opb_A SWI5-dependent HO expre 99.9 7.1E-22 2.4E-26 213.0 31.7 381 80-518 229-685 (778)
37 4eoz_A Speckle-type POZ protei 99.9 7E-25 2.4E-29 194.5 6.2 131 537-667 15-145 (145)
38 4db6_A Armadillo repeat protei 99.9 7.9E-22 2.7E-26 187.7 22.2 197 205-401 10-209 (210)
39 4db6_A Armadillo repeat protei 99.9 8.6E-22 2.9E-26 187.4 20.7 200 155-362 10-209 (210)
40 1xqr_A HSPBP1 protein; armadil 99.9 7E-21 2.4E-25 187.7 24.2 210 55-283 26-243 (296)
41 2vkp_A BTB/POZ domain-containi 99.9 3.9E-22 1.3E-26 166.7 10.5 104 541-645 2-109 (109)
42 2if5_A Zinc finger and BTB dom 99.9 1.2E-21 4.1E-26 166.7 11.6 103 539-641 17-119 (120)
43 1r29_A B-cell lymphoma 6 prote 99.9 3.2E-21 1.1E-25 165.8 12.1 104 539-643 21-125 (127)
44 1xqr_A HSPBP1 protein; armadil 99.9 2.2E-20 7.5E-25 184.1 19.6 223 180-403 55-289 (296)
45 2z8h_A Transcription regulator 99.8 2.8E-21 9.7E-26 168.5 8.8 109 539-649 28-137 (138)
46 2ppi_A Gigaxonin; BTB domain, 99.8 4.4E-21 1.5E-25 168.0 8.9 103 539-641 39-143 (144)
47 3b84_A Zinc finger and BTB dom 99.8 4.5E-21 1.5E-25 162.4 8.4 101 539-643 16-116 (119)
48 1buo_A POZ domain, protein (pr 99.8 1.7E-20 5.9E-25 159.4 11.2 102 539-645 20-121 (121)
49 2yy9_A Zinc finger and BTB dom 99.8 6.2E-21 2.1E-25 165.3 7.9 105 539-647 17-121 (135)
50 2vpk_A Myoneurin; transcriptio 99.8 2E-20 7E-25 157.9 10.5 100 539-642 14-115 (116)
51 3tt9_A Plakophilin-2; cell adh 99.8 9.9E-20 3.4E-24 171.1 15.3 196 59-279 10-230 (233)
52 3tt9_A Plakophilin-2; cell adh 99.8 1.7E-19 5.8E-24 169.5 16.0 193 208-402 9-230 (233)
53 2q81_A MIZ-1 protein; BTB/POZ 99.8 4.2E-20 1.4E-24 156.4 8.5 99 539-642 19-117 (119)
54 3ohu_A Transcription regulator 99.8 1E-20 3.4E-25 162.2 3.8 100 539-640 24-124 (125)
55 2ihc_A Transcription regulator 99.8 1.5E-20 5.2E-25 160.4 3.7 102 539-642 21-123 (124)
56 3ga1_A Nucleus accumbens-assoc 99.8 4.2E-20 1.4E-24 159.0 5.9 102 539-644 25-127 (129)
57 3fkc_A Transcriptional regulat 99.8 1.5E-18 5.2E-23 145.6 10.1 92 539-635 23-115 (116)
58 3m5b_A Zinc finger and BTB dom 99.8 4.5E-19 1.6E-23 149.0 6.7 94 541-643 24-117 (119)
59 1b3u_A Protein (protein phosph 99.7 1.5E-16 5.2E-21 176.7 23.8 415 61-515 164-586 (588)
60 3grl_A General vesicular trans 99.7 4.7E-15 1.6E-19 155.8 30.1 334 52-411 16-405 (651)
61 1b3u_A Protein (protein phosph 99.7 4.3E-15 1.5E-19 165.0 24.9 370 76-518 100-472 (588)
62 3grl_A General vesicular trans 99.7 4.6E-14 1.6E-18 148.3 30.5 411 55-511 58-545 (651)
63 4fdd_A Transportin-1; heat rep 99.7 1.8E-15 6E-20 175.4 20.7 414 76-518 141-660 (852)
64 4fdd_A Transportin-1; heat rep 99.7 1.8E-15 6.1E-20 175.3 19.6 379 75-519 60-474 (852)
65 1oyz_A Hypothetical protein YI 99.6 3.7E-13 1.3E-17 133.8 22.1 257 154-512 20-278 (280)
66 2vgl_B AP-2 complex subunit be 99.5 3E-13 1E-17 148.9 23.4 356 76-518 62-421 (591)
67 1ibr_B P95, importin beta-1 su 99.5 8.6E-13 2.9E-17 141.6 26.3 389 62-519 3-440 (462)
68 1oyz_A Hypothetical protein YI 99.5 6.1E-13 2.1E-17 132.2 23.0 230 100-400 19-249 (280)
69 2vgl_B AP-2 complex subunit be 99.5 4.6E-13 1.6E-17 147.5 20.0 397 62-518 87-495 (591)
70 2bpt_A Importin beta-1 subunit 99.5 7.9E-13 2.7E-17 153.8 20.9 428 59-516 367-857 (861)
71 1qgr_A Protein (importin beta 99.5 1.4E-12 4.6E-17 152.2 21.5 433 59-518 170-681 (876)
72 2bpt_A Importin beta-1 subunit 99.5 2.5E-12 8.4E-17 149.7 23.1 431 61-518 179-670 (861)
73 1w63_A Adapter-related protein 99.5 7.8E-11 2.7E-15 130.1 32.9 345 79-518 86-453 (618)
74 1qgr_A Protein (importin beta 99.4 7.4E-12 2.5E-16 145.9 23.3 384 76-518 50-481 (876)
75 3ltm_A Alpha-REP4; protein eng 99.4 3.4E-12 1.2E-16 120.8 15.9 190 248-520 18-207 (211)
76 1w63_A Adapter-related protein 99.4 1.5E-11 5.2E-16 135.8 22.9 399 62-518 108-542 (618)
77 3ltm_A Alpha-REP4; protein eng 99.4 9.2E-12 3.1E-16 117.8 18.0 189 206-478 18-206 (211)
78 4gmo_A Putative uncharacterize 99.4 1E-10 3.6E-15 130.4 29.2 199 59-276 36-256 (684)
79 1ibr_B P95, importin beta-1 su 99.4 3.6E-12 1.2E-16 136.7 16.3 342 76-476 50-438 (462)
80 2ast_A S-phase kinase-associat 99.4 3E-12 1E-16 113.1 11.7 113 550-663 3-147 (159)
81 3ltj_A Alpharep-4; protein eng 99.4 3.3E-11 1.1E-15 113.0 19.0 185 206-474 13-197 (201)
82 3ltj_A Alpharep-4; protein eng 99.3 1.9E-11 6.4E-16 114.7 16.5 185 249-516 14-198 (201)
83 1u6g_C TIP120 protein, CAND1; 99.2 8.1E-10 2.8E-14 133.2 26.9 427 57-518 48-600 (1230)
84 1u6g_C TIP120 protein, CAND1; 99.2 1E-09 3.5E-14 132.2 23.0 420 59-516 8-506 (1230)
85 4ajy_C Transcription elongatio 99.1 2.3E-10 7.9E-15 91.4 7.9 79 550-629 4-96 (97)
86 2vgl_A Adaptor protein complex 99.1 3.3E-08 1.1E-12 108.6 28.0 352 76-518 87-472 (621)
87 2vgl_A Adaptor protein complex 99.0 4.4E-08 1.5E-12 107.7 25.3 399 62-518 112-552 (621)
88 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 1.5E-09 5.2E-14 93.3 9.9 98 550-652 4-128 (141)
89 4gmo_A Putative uncharacterize 98.9 4.5E-09 1.5E-13 117.2 13.6 218 106-343 36-286 (684)
90 2p1m_A SKP1-like protein 1A; F 98.8 7.7E-10 2.6E-14 97.5 2.7 108 550-661 6-144 (160)
91 4ady_A RPN2, 26S proteasome re 98.7 2.7E-06 9.1E-11 94.5 24.9 306 130-518 409-723 (963)
92 1ho8_A Vacuolar ATP synthase s 98.7 5.1E-06 1.7E-10 84.6 23.6 343 157-518 77-478 (480)
93 2db0_A 253AA long hypothetical 98.6 8.9E-06 3E-10 69.9 20.4 215 103-362 31-246 (253)
94 3b2a_A TON_1937, putative unch 98.6 9.8E-07 3.4E-11 79.4 15.1 220 249-509 33-254 (265)
95 2qk2_A LP04448P; mini spindles 98.6 3.8E-07 1.3E-11 87.8 13.0 186 293-518 17-207 (242)
96 2db0_A 253AA long hypothetical 98.6 1.7E-05 5.9E-10 68.1 20.8 184 204-404 29-213 (253)
97 3tjz_B Coatomer subunit gamma; 98.5 5.7E-06 1.9E-10 82.5 18.8 278 159-513 70-350 (355)
98 3b2a_A TON_1937, putative unch 98.5 4.7E-06 1.6E-10 75.1 15.9 187 158-364 34-220 (265)
99 1hv2_A Elongin C, ELC1; protei 98.5 4.5E-07 1.5E-11 72.1 8.4 79 550-630 6-99 (99)
100 3tjz_B Coatomer subunit gamma; 98.4 3.4E-06 1.2E-10 84.1 15.6 244 106-402 70-317 (355)
101 4ady_A RPN2, 26S proteasome re 98.4 9.3E-05 3.2E-09 82.3 28.0 276 63-401 394-676 (963)
102 2fnj_C Transcription elongatio 98.4 4.6E-07 1.6E-11 71.7 6.5 80 550-630 3-96 (96)
103 1te4_A Conserved protein MTH18 98.4 6E-08 2.1E-12 83.2 1.3 121 332-514 11-131 (131)
104 2qk2_A LP04448P; mini spindles 98.4 2.7E-06 9.1E-11 81.8 13.1 185 161-364 19-207 (242)
105 3v7d_A Suppressor of kinetocho 98.3 2.9E-06 1E-10 75.0 10.3 110 550-660 9-151 (169)
106 2qk1_A Protein STU2; STU2P, XM 98.3 2.7E-06 9.1E-11 81.6 10.6 192 295-518 20-222 (249)
107 1te4_A Conserved protein MTH18 98.3 9.1E-08 3.1E-12 82.1 -0.2 121 206-360 11-131 (131)
108 2eqx_A Kelch repeat and BTB do 98.2 1.7E-06 5.7E-11 70.2 5.8 56 643-698 6-61 (105)
109 2qk1_A Protein STU2; STU2P, XM 98.2 5.3E-06 1.8E-10 79.5 9.4 190 211-401 20-220 (249)
110 3drz_A BTB/POZ domain-containi 98.1 1.2E-05 4.1E-10 65.1 9.1 93 550-643 8-106 (107)
111 1vcb_B Protein (elongin C); tu 98.0 1.3E-05 4.4E-10 65.1 7.3 80 550-630 19-112 (112)
112 1ho8_A Vacuolar ATP synthase s 98.0 0.00021 7.1E-09 72.9 16.6 234 79-320 184-476 (480)
113 1wa5_C Importin alpha RE-expor 98.0 0.0013 4.5E-08 76.7 26.0 444 60-518 122-672 (960)
114 1wa5_C Importin alpha RE-expor 97.9 0.0018 6.2E-08 75.5 27.0 379 77-516 99-582 (960)
115 3dad_A FH1/FH2 domain-containi 97.9 0.00038 1.3E-08 67.3 16.9 154 210-363 121-287 (339)
116 3dad_A FH1/FH2 domain-containi 97.7 0.0013 4.4E-08 63.6 16.1 183 160-351 121-325 (339)
117 2iw3_A Elongation factor 3A; a 97.7 0.0036 1.2E-07 70.8 21.9 245 81-363 70-325 (986)
118 2iw3_A Elongation factor 3A; a 97.6 0.00092 3.2E-08 75.5 16.7 278 224-517 31-325 (986)
119 2x19_B Importin-13; nuclear tr 97.4 0.017 5.6E-07 67.6 24.3 136 301-476 459-600 (963)
120 3ibv_A Exportin-T; karyopherin 97.3 0.0097 3.3E-07 68.8 19.6 315 59-401 191-566 (980)
121 2x1g_F Cadmus; transport prote 97.2 0.075 2.6E-06 62.0 27.4 220 129-364 477-724 (971)
122 2x1g_F Cadmus; transport prote 97.1 0.013 4.5E-07 68.4 18.8 289 180-517 259-616 (971)
123 3ibv_A Exportin-T; karyopherin 97.0 0.1 3.4E-06 60.4 25.1 409 76-519 21-527 (980)
124 1lrv_A LRV, leucine-rich repea 97.0 0.0009 3.1E-08 63.0 6.6 178 94-396 64-241 (244)
125 3drx_A BTB/POZ domain-containi 97.0 0.00093 3.2E-08 59.6 6.2 93 550-643 14-112 (202)
126 4hat_C Exportin-1; heat repeat 97.0 0.092 3.2E-06 60.8 24.3 311 56-401 189-569 (1023)
127 2of3_A ZYG-9; multifunctional 97.0 0.042 1.4E-06 52.0 17.4 175 210-400 49-235 (266)
128 1upk_A MO25 protein; transfera 96.9 0.033 1.1E-06 53.9 16.5 203 203-408 74-290 (341)
129 2x19_B Importin-13; nuclear tr 96.9 0.21 7.2E-06 58.1 27.0 334 129-517 462-847 (963)
130 4ffb_C Protein STU2; tubulin f 96.9 0.021 7.3E-07 55.5 15.4 187 209-402 12-213 (278)
131 3m1i_C Exportin-1; heat repeat 96.7 0.1 3.5E-06 61.3 22.7 294 131-476 210-570 (1049)
132 3oc3_A Helicase MOT1, MOT1; re 96.7 0.0052 1.8E-07 63.0 9.2 238 129-397 187-432 (800)
133 1upk_A MO25 protein; transfera 96.7 0.029 9.9E-07 54.2 14.0 201 285-517 72-284 (341)
134 2fv2_A RCD1 required for cell 96.6 0.022 7.7E-07 52.4 12.0 177 80-276 73-266 (268)
135 2fv2_A RCD1 required for cell 96.6 0.097 3.3E-06 48.3 16.1 228 79-318 17-266 (268)
136 3m1i_C Exportin-1; heat repeat 96.5 0.24 8E-06 58.2 23.8 314 59-402 192-570 (1049)
137 4hat_C Exportin-1; heat repeat 96.5 0.18 6.2E-06 58.4 22.1 145 129-281 466-621 (1023)
138 1lrv_A LRV, leucine-rich repea 96.5 0.003 1E-07 59.5 6.0 173 75-357 62-241 (244)
139 4ffb_C Protein STU2; tubulin f 96.4 0.017 6E-07 56.1 10.9 187 293-518 12-214 (278)
140 3oc3_A Helicase MOT1, MOT1; re 96.3 0.018 6.3E-07 59.1 10.2 235 250-511 175-431 (800)
141 2of3_A ZYG-9; multifunctional 96.0 0.16 5.4E-06 48.0 14.9 175 252-473 49-234 (266)
142 3l9t_A Putative uncharacterize 95.8 0.049 1.7E-06 49.9 9.6 142 251-411 73-218 (240)
143 3l9t_A Putative uncharacterize 95.5 0.36 1.2E-05 44.2 14.2 132 131-289 86-218 (240)
144 3ebb_A Phospholipase A2-activa 95.1 1.5 5.1E-05 42.5 18.4 167 131-302 117-287 (304)
145 3kvt_A Potassium channel prote 94.6 0.019 6.4E-07 46.6 2.9 94 550-644 7-105 (115)
146 1s1g_A Potassium voltage-gated 94.5 0.047 1.6E-06 44.9 5.2 89 549-641 14-109 (124)
147 3c2g_A SYS-1 protein; beta-cat 94.0 0.35 1.2E-05 46.3 10.4 136 80-235 260-402 (619)
148 3gjx_A Exportin-1; transport, 93.9 2.6 8.9E-05 48.7 19.7 318 59-401 204-595 (1073)
149 3ebb_A Phospholipase A2-activa 93.3 0.83 2.8E-05 44.3 12.2 135 219-354 160-298 (304)
150 2nz0_B Potassium voltage-gated 93.2 0.062 2.1E-06 45.2 3.6 91 548-642 35-132 (140)
151 3c2g_A SYS-1 protein; beta-cat 93.1 1.7 5.9E-05 41.7 13.6 134 133-276 260-401 (619)
152 1nn7_A Potassium channel KV4.2 92.3 0.043 1.5E-06 43.7 1.4 87 550-640 2-95 (105)
153 1lsh_A Lipovitellin (LV-1N, LV 92.0 5 0.00017 46.7 18.7 171 159-363 393-577 (1056)
154 3eg5_B Protein diaphanous homo 91.5 1.2 4.2E-05 44.9 11.3 149 332-503 108-281 (383)
155 3u0r_A Apoptosis inhibitor 5; 91.3 3.9 0.00013 41.7 14.4 122 218-359 39-160 (507)
156 2f31_A Diaphanous protein homo 91.3 4.2 0.00014 37.7 14.1 163 146-309 33-217 (233)
157 1t1d_A Protein (potassium chan 91.2 0.095 3.2E-06 41.2 2.2 84 550-634 3-90 (100)
158 2f31_A Diaphanous protein homo 90.9 3.6 0.00012 38.1 13.3 127 262-389 67-216 (233)
159 3eg5_B Protein diaphanous homo 90.4 4.3 0.00015 40.8 14.2 146 242-388 103-281 (383)
160 3a6p_A Exportin-5; exportin-5, 88.6 13 0.00043 44.1 18.6 297 62-394 13-373 (1204)
161 3u0r_A Apoptosis inhibitor 5; 88.4 3.9 0.00014 41.6 11.8 121 261-398 40-160 (507)
162 1lsh_A Lipovitellin (LV-1N, LV 87.9 11 0.00038 43.8 17.1 101 293-402 393-508 (1056)
163 3a6p_A Exportin-5; exportin-5, 87.5 19 0.00065 42.6 19.1 223 262-518 26-278 (1204)
164 3gjx_A Exportin-1; transport, 86.7 13 0.00043 43.1 16.4 234 251-517 30-276 (1073)
165 2bnx_A Diaphanous protein homo 86.6 10 0.00036 38.1 14.0 162 148-310 39-222 (386)
166 2bnx_A Diaphanous protein homo 86.5 8.8 0.0003 38.6 13.4 129 262-390 71-221 (386)
167 3qml_C Protein SLS1, nucleotid 81.7 33 0.0011 32.7 13.8 163 56-235 21-188 (315)
168 3qml_C Protein SLS1, nucleotid 80.8 12 0.0004 35.7 10.5 133 180-319 43-188 (315)
169 2vkp_A BTB/POZ domain-containi 78.8 2.5 8.4E-05 33.6 4.8 32 645-676 77-108 (109)
170 2eqx_A Kelch repeat and BTB do 71.0 4.8 0.00017 31.7 4.5 37 609-645 4-40 (105)
171 3gs3_A Symplekin, LD45768P; he 69.5 73 0.0025 29.7 18.4 199 55-286 10-251 (257)
172 1r29_A B-cell lymphoma 6 prote 66.3 11 0.00037 30.8 6.0 32 645-676 95-126 (127)
173 2yy9_A Zinc finger and BTB dom 65.9 5.9 0.0002 32.9 4.3 38 645-682 87-124 (135)
174 3o2t_A Symplekin; heat repeat, 63.5 1.2E+02 0.0042 30.1 14.9 126 265-400 41-182 (386)
175 2vpk_A Myoneurin; transcriptio 62.6 14 0.00047 29.5 5.8 30 645-674 86-115 (116)
176 2q81_A MIZ-1 protein; BTB/POZ 62.2 17 0.0006 29.1 6.4 30 645-674 88-117 (119)
177 1buo_A POZ domain, protein (pr 62.0 22 0.00074 28.6 6.9 31 645-675 89-119 (121)
178 3b84_A Zinc finger and BTB dom 61.8 10 0.00035 30.6 4.9 32 645-676 86-117 (119)
179 3o2t_A Symplekin; heat repeat, 59.9 1.4E+02 0.0048 29.6 20.1 125 182-319 42-182 (386)
180 2if5_A Zinc finger and BTB dom 57.2 26 0.00089 28.0 6.7 29 645-673 91-119 (120)
181 3ldz_A STAM-1, signal transduc 56.4 18 0.00063 30.1 5.6 67 334-400 43-113 (140)
182 3gs3_A Symplekin, LD45768P; he 55.1 1.3E+02 0.0046 27.9 16.1 127 264-400 30-172 (257)
183 1x5b_A Signal transducing adap 53.4 27 0.00092 30.0 6.3 67 334-400 53-124 (163)
184 1vsy_5 Proteasome activator BL 53.4 62 0.0021 37.1 11.0 216 293-517 135-366 (997)
185 2ast_A S-phase kinase-associat 50.6 32 0.0011 29.3 6.4 64 613-678 49-127 (159)
186 2z8h_A Transcription regulator 50.6 4 0.00014 34.1 0.5 33 645-677 101-133 (138)
187 1mhq_A ADP-ribosylation factor 50.6 31 0.0011 29.1 6.1 67 334-400 39-115 (148)
188 1mhq_A ADP-ribosylation factor 48.4 28 0.00095 29.3 5.4 71 208-278 39-116 (148)
189 1x5b_A Signal transducing adap 48.4 24 0.00083 30.3 5.2 70 208-277 53-124 (163)
190 3ldz_A STAM-1, signal transduc 48.3 24 0.00084 29.4 5.0 70 208-277 43-113 (140)
191 3g2s_A C-terminal fragment of 48.1 37 0.0013 28.6 6.1 67 334-400 49-125 (149)
192 1juq_A ADP-ribosylation factor 47.8 47 0.0016 28.7 7.0 71 208-278 51-128 (171)
193 3htm_A Speckle-type POZ protei 46.8 30 0.001 29.8 5.8 33 613-645 132-164 (172)
194 1fs1_B SKP1, cyclin A/CDK2-ass 46.7 69 0.0024 26.5 7.7 80 597-678 25-122 (141)
195 1juq_A ADP-ribosylation factor 46.4 38 0.0013 29.3 6.2 67 334-400 51-127 (171)
196 2r9r_B Paddle chimera voltage 44.8 13 0.00045 39.0 3.5 85 549-634 53-141 (514)
197 3gae_A Protein DOA1; UFD3, CDC 44.4 47 0.0016 31.0 6.9 104 218-325 101-222 (253)
198 3g2s_A C-terminal fragment of 44.1 44 0.0015 28.1 6.0 71 208-278 49-126 (149)
199 2ppi_A Gigaxonin; BTB domain, 43.4 12 0.00042 31.4 2.5 29 645-673 115-143 (144)
200 3zyq_A Hepatocyte growth facto 40.5 51 0.0017 30.1 6.4 67 334-400 46-117 (226)
201 3m5b_A Zinc finger and BTB dom 40.4 20 0.00069 28.8 3.3 31 645-675 87-117 (119)
202 4eoz_A Speckle-type POZ protei 40.0 14 0.00049 30.8 2.4 33 645-677 91-123 (145)
203 3hve_A Gigaxonin; ubiquitin, c 39.2 84 0.0029 29.1 8.0 32 645-676 99-130 (256)
204 2plx_B Peptide inhibitor; heli 38.8 23 0.00079 18.4 2.0 22 651-672 2-23 (26)
205 3ga1_A Nucleus accumbens-assoc 35.1 14 0.00049 30.2 1.6 32 645-676 96-127 (129)
206 3gae_A Protein DOA1; UFD3, CDC 34.8 41 0.0014 31.3 4.8 107 130-239 104-220 (253)
207 1dvp_A HRS, hepatocyte growth 32.3 71 0.0024 28.9 5.9 67 334-400 43-114 (220)
208 2xpp_A IWS1, ECU08_0440; trans 31.0 1.6E+02 0.0054 24.5 7.2 77 238-318 50-134 (145)
209 3jxy_A Alkylpurine DNA glycosy 30.8 3E+02 0.01 24.9 11.2 129 131-290 76-207 (232)
210 3pst_A Protein DOA1; protein d 29.9 90 0.0031 31.4 6.5 108 130-240 276-393 (425)
211 3pst_A Protein DOA1; protein d 29.9 1.6E+02 0.0055 29.6 8.3 129 266-401 243-389 (425)
212 2b6c_A Hypothetical protein EF 29.3 3.1E+02 0.011 24.5 12.4 127 131-288 70-198 (220)
213 3zyq_A Hepatocyte growth facto 27.9 53 0.0018 30.0 4.2 70 106-194 47-118 (226)
214 1vsy_5 Proteasome activator BL 27.3 1.8E+02 0.0062 33.3 9.3 102 250-361 134-244 (997)
215 2xpp_A IWS1, ECU08_0440; trans 26.1 1.8E+02 0.0061 24.2 6.6 77 196-276 50-134 (145)
216 3hqi_A Speckle-type POZ protei 25.9 50 0.0017 31.8 4.0 33 613-645 272-304 (312)
217 3i3n_A Kelch-like protein 11; 25.7 95 0.0032 29.2 5.9 32 645-676 107-138 (279)
218 3nfq_A Transcription factor IW 25.2 3.2E+02 0.011 23.4 8.4 78 238-319 65-150 (170)
219 3l3f_X Protein DOA1, DOA1/UFD3 24.8 89 0.0031 30.7 5.4 107 130-239 213-329 (362)
220 3l3f_X Protein DOA1, DOA1/UFD3 24.0 2.1E+02 0.0073 28.0 7.9 100 302-401 210-326 (362)
221 3fga_B Serine/threonine-protei 24.0 5.5E+02 0.019 25.6 16.1 224 97-362 122-366 (403)
222 1elk_A Target of MYB1; superhe 22.1 1.5E+02 0.0053 25.0 5.8 67 334-400 54-129 (157)
223 1elk_A Target of MYB1; superhe 21.8 3.6E+02 0.012 22.6 9.6 70 208-277 54-129 (157)
224 3s4w_B Protein FACD2, fanconi 20.7 1.1E+03 0.037 27.8 21.8 285 78-400 172-506 (1323)
225 1dvp_A HRS, hepatocyte growth 20.3 77 0.0026 28.7 3.8 69 106-193 44-114 (220)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.8e-38 Score=344.86 Aligned_cols=398 Identities=19% Similarity=0.280 Sum_probs=345.4
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc--ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
.++.++..+.+. |++.+..|+..++.+.+ .......+++.|++|.|+++|+..+. ++++..
T Consensus 77 ~l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~~ 139 (529)
T 3tpo_A 77 SVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFE 139 (529)
T ss_dssp CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHHH
T ss_pred HHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHHH
Confidence 366677776654 77889999999998765 23456788999999999999976554 289999
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
|+|+|+||+ ++++.+..+++.|++|.|+.+|.+.+. ++++.|+|+|+|++.+++..+..+...|+++.|+.
T Consensus 140 Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 140 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence 999999999 888899999999999999999998876 99999999999999989999999999999999999
Q ss_pred hhccCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 215 LLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 215 ll~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
++..++ ..+...++++|.+++.+...........++++.|+.++.+++++++..++|+|.+++.++++....+..
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 998654 357789999999999765444444444578999999999999999999999999999888888888889
Q ss_pred cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HH
Q 005088 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TA 366 (715)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~ 366 (715)
.|+++.|+.+|.+.+..++..++.+|+|++.+++.....+.+.|+++.|+.+|.++++.++..|+|+|+|++... ..
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~ 371 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 371 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999999999999999999888888899999999999999999999999999999999999866 67
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC--CCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHh
Q 005088 367 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 444 (715)
Q Consensus 367 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (715)
.+.+.|+++.|+.++.+.+..++..|+|+|+|++. ++++...+++.|
T Consensus 372 ~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g------------------------------- 420 (529)
T 3tpo_A 372 QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG------------------------------- 420 (529)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT-------------------------------
T ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc-------------------------------
Confidence 78899999999999999999999999999999974 344555566655
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC-------ccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 445 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 445 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
+++.|+.+|.+.+++++..++.+|.++.... .....+.+.||+..|..|..++|.++...|...|-+
T Consensus 421 --~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 421 --IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp --CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred --CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5667888999999999999999999985321 134456788999999999999999999988776643
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.5e-38 Score=341.97 Aligned_cols=398 Identities=19% Similarity=0.283 Sum_probs=345.8
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
.++.+|+.+.+. |++.|..|+..++.+.+. ....+.+++.|+||.|+++|+..+. ++++..
T Consensus 58 ~i~~~v~~l~s~------d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-----------~~lq~~ 120 (510)
T 3ul1_B 58 SVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFE 120 (510)
T ss_dssp CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-----------HHHHHH
T ss_pred hHHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-----------HHHHHH
Confidence 377888888765 788999999999987652 3456789999999999999986654 289999
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
|+|+|+||+ ++++.+..+++.|++|.|+.+|.+++. ++++.|+|+|+|++.+++..+..+...|+++.|+.
T Consensus 121 Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~ 192 (510)
T 3ul1_B 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192 (510)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH
Confidence 999999999 899999999999999999999998765 99999999999999988999999999999999999
Q ss_pred hhccCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 215 LLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 215 ll~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
++..++ ..+...++++|.+++.+...........++++.|+.++.+++++++..++++|++|+..+++....+..
T Consensus 193 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 272 (510)
T 3ul1_B 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272 (510)
T ss_dssp HTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHh
Confidence 998654 357789999999999755444444444578999999999999999999999999999888888888889
Q ss_pred cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HH
Q 005088 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TA 366 (715)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~ 366 (715)
.|+++.|+.++.+.+..++..++++|+|++.+++..+..+.+.|+++.|+.+|.++++.+++.|+|+|+|++... ..
T Consensus 273 ~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~ 352 (510)
T 3ul1_B 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352 (510)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999999988888899999999999999999999999999999999998766 77
Q ss_pred HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC--CCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHh
Q 005088 367 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 444 (715)
Q Consensus 367 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (715)
.+.+.|+++.|+.++.+.+..++..|+++|+|++. +.+....+++.|
T Consensus 353 ~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g------------------------------- 401 (510)
T 3ul1_B 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG------------------------------- 401 (510)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT-------------------------------
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC-------------------------------
Confidence 78899999999999999999999999999999975 344445555555
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC-------ccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 445 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 445 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
+++.|+.+|.+.+++++..++.+|.++.... ..+..+.+.||+..|..|..++|.++...|...|-+
T Consensus 402 --~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 402 --IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp --CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred --CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5667888999999999999999999985321 134456788999999999999999999988777643
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.5e-36 Score=332.82 Aligned_cols=402 Identities=19% Similarity=0.254 Sum_probs=350.5
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-Ch-hhHHHHHhcCChHHHHhhhcCCC-CcccccCCCccchHHH
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NE-EVVNWIVEGGAVPALVKHLQAPP-TSEADRNLKPFEHEVE 133 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~~~~~g~v~~L~~lL~~~~-~~~~~~~~~~~~~~v~ 133 (715)
..++.++..|.+. ++..+..|++.|++++. ++ .....++..|++|.|+++|++++ . .++
T Consensus 74 ~~l~~lv~~L~s~------~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~------------~v~ 135 (528)
T 4b8j_A 74 ESLPAMIGGVYSD------DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP------------QLQ 135 (528)
T ss_dssp -CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCH------------HHH
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCH------------HHH
Confidence 3477777777644 67789999999999976 33 67788899999999999998876 4 999
Q ss_pred hhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
..|+|+|++++ ++++.+..+...|+++.|+.+|.+.+. ++++.|+++|++++..++..+..+...|+++.|
T Consensus 136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~L 207 (528)
T 4b8j_A 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPL 207 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHH
Confidence 99999999999 779999999999999999999998654 999999999999998888889899999999999
Q ss_pred HHhh-ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcC
Q 005088 213 VELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (715)
Q Consensus 213 ~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g 291 (715)
+.++ .+.++.++..++++|.+|+...+... .....|+++.|+.++.++++.++..++++|++++...+.....+.+.|
T Consensus 208 l~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 286 (528)
T 4b8j_A 208 LAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (528)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 9999 67789999999999999997543333 334578999999999999999999999999999988877778888999
Q ss_pred ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCC-CHHHHHHHHHHHHHhHHHH---HHH
Q 005088 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQVI---TAG 367 (715)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~---~~~ 367 (715)
+++.|+.+|.+.++.++..|+++|+|++.+++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++... ...
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~ 366 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA 366 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999988888888889999999999999988 9999999999999999755 567
Q ss_pred HHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC--CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhh
Q 005088 368 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 445 (715)
Q Consensus 368 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (715)
+.+.|+++.|+.++.+.++.++..|+++|.|++.. ++....+.+.
T Consensus 367 ~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------------------------------- 413 (528)
T 4b8j_A 367 VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSE--------------------------------- 413 (528)
T ss_dssp HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT---------------------------------
T ss_pred HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC---------------------------------
Confidence 88889999999999999999999999999999754 4444444444
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc------------cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 446 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 446 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
++++.|+.+|.+.++.++..++.+|.++....+ ....+.+.|+++.|..+..+++++++..|...|.+
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 493 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788899999999999999999999965432 35666788999999999999999999999999988
Q ss_pred hhhhc
Q 005088 514 LANKA 518 (715)
Q Consensus 514 L~~~~ 518 (715)
+-...
T Consensus 494 ~~~~e 498 (528)
T 4b8j_A 494 YWMDE 498 (528)
T ss_dssp HCC--
T ss_pred HCCCc
Confidence 77643
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-36 Score=329.65 Aligned_cols=440 Identities=19% Similarity=0.204 Sum_probs=348.9
Q ss_pred hhHHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHH-hcCChHHHHhhhcCCCCcccccCCCc
Q 005088 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKP 127 (715)
Q Consensus 50 ~~~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~-~~g~v~~L~~lL~~~~~~~~~~~~~~ 127 (715)
.+++........++...... .+.+....|++++.++... ++....++ ..|+++.|+.++.+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~--------- 304 (810)
T 3now_A 239 EAKARFTDQIDEYIKDKLLA-----PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE--------- 304 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH---------
T ss_pred hhHHHHHHHHHHHHHHHhcc-----CChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH---------
Confidence 33344444444444433322 2344578999999999984 66666666 78999999999999877
Q ss_pred cchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCc-cchhHHHhc
Q 005088 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRME 206 (715)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~ 206 (715)
.++.+|+|++++++.++++|..+.+.|+ +.|+.++++.++ .++..|+++|.++..... +........
T Consensus 305 ---~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~ 372 (810)
T 3now_A 305 ---LQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGD 372 (810)
T ss_dssp ---HHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTT
T ss_pred ---HHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhh
Confidence 9999999999999988999999999885 999999986553 889999999999974221 122122233
Q ss_pred CC----cHHHHHhhccC--CHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005088 207 GG----IPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (715)
Q Consensus 207 g~----i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 279 (715)
|. ++.|+++|.++ +++++..|+++|.+|+. ++..+..++ +.|+++.|+.++++++..++..++++|.||+.+
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 43 56688888877 88999999999999996 566666666 579999999999999999999999999999875
Q ss_pred Ch-----------------------------hH---HHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhH
Q 005088 280 SP-----------------------------NI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (715)
Q Consensus 280 ~~-----------------------------~~---~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (715)
.+ .. .+.+++.|+++.|+.++.++++.++..|+|+|+|++ ++++++.
T Consensus 452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~ 530 (810)
T 3now_A 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRG 530 (810)
T ss_dssp SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHH
T ss_pred chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHH
Confidence 42 12 268889999999999999999999999999999998 5677999
Q ss_pred HHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHH----hcCChHHHHHhhccC-ChhHHHHHHHHHHhccC
Q 005088 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIA----HNGGLVPLLKLLDSK-NGSLQHNAAFALYGLAD 401 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~----~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 401 (715)
.+++.|+++.|+.+|.++++..++.|+++|.||+... ....+ ..+++++|+.+|++. +...+..|+++|.||+.
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999865 22211 246999999999765 34456789999999987
Q ss_pred C-CchhhHHHhhccccccccchhhhhhh-hhHHHHHH-------HHHHHHHh-hhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 005088 402 N-EDNVADFIRVGGVQKLQDGEFIVQAT-KDCVAKTL-------KRLEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALA 471 (715)
Q Consensus 402 ~-~~~~~~l~~~~~i~~L~~~~~~~~~~-~~~~~~~~-------~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~ 471 (715)
. ++++..+++.|+++.|.......... ...+.+.+ ........ .+.++.|+.++.+.+..+|..|+++|.
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7 46788899999999998755432211 11122222 12222333 688999999999999999999999999
Q ss_pred hhcC-CCccchhhhc-CCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 472 HLCS-PDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 472 ~l~~-~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
+++. ++.....+.+ .|+++.|+.++.+++..+|..|+|+|.||...
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 9987 4555566666 89999999999999999999999999999885
No 5
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.2e-35 Score=320.51 Aligned_cols=402 Identities=18% Similarity=0.255 Sum_probs=348.5
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCC-CCcccccCCCccchHHHh
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (715)
.++.++..|.+. ++..+..|+..|.++... ...+..+++.|++|.|+++|.++ +. .++.
T Consensus 88 ~i~~lv~~L~s~------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~~ 149 (530)
T 1wa5_B 88 ELPQMTQQLNSD------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQL 149 (530)
T ss_dssp CHHHHHHHHSCS------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHHH
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHHH
Confidence 356666666543 677899999999999763 45567788999999999999886 45 9999
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
.|+|+|++++ .+++.+..+...|+++.|+.+|.+.+. ++++.|+++|++++..++..+..+...|+++.|+
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 221 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH
Confidence 9999999999 778899999999999999999997654 9999999999999988888888888999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l 293 (715)
.++.+.++.++..++++|.+|+.+...........++++.|+.++.++++.++..++++|++|+...++....+.+.|++
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 301 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH
Confidence 99999999999999999999997542333345557899999999999999999999999999998888878888899999
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHHHh
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGIAH 370 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~~ 370 (715)
+.|+.++.+.++.++..|+++|++++.+++.....+.+.|+++.|+.+|.++++.++..|+++|++++... ...+.+
T Consensus 302 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999888887788888999999999999999999999999999999754 566778
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHhccCC--C--chhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhh
Q 005088 371 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--E--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 446 (715)
Q Consensus 371 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (715)
.|+++.|+.+|.++++.++..|+++|++++.. + +....+.+ .+
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~---------------------------------~~ 428 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS---------------------------------QG 428 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH---------------------------------TT
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH---------------------------------CC
Confidence 99999999999999999999999999999753 2 33444444 34
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc------------cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHh
Q 005088 447 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 514 (715)
Q Consensus 447 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L 514 (715)
+++.|+.++.+.++.++..++.+|.++....+ ....+.+.||++.|..++.++++.++..|..+|.++
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 67788899999999999999999999965432 345567889999999999999999999999999887
Q ss_pred hhhc
Q 005088 515 ANKA 518 (715)
Q Consensus 515 ~~~~ 518 (715)
-...
T Consensus 509 ~~~~ 512 (530)
T 1wa5_B 509 FGEE 512 (530)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7653
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.9e-35 Score=316.58 Aligned_cols=373 Identities=23% Similarity=0.300 Sum_probs=318.8
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
..+|.++++|... .++.+|.+|+|+|+|++. +++.+..+++.|++|.|+.+|++++. +++..
T Consensus 100 G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~ 162 (510)
T 3ul1_B 100 GLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQ 162 (510)
T ss_dssp THHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHH
Confidence 3577787777644 357789999999999987 68899999999999999999998877 99999
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
|+|+|+||+ ++++++..+...|+++.|+.++...+..... ..+++.++|+|.+++.+...........++++.|+.
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 239 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH
Confidence 999999999 7899999999999999999999876532111 267889999999999876666666666789999999
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
++.+++++++..++++|.+|+.+.+.....+.+.|+++.|+.++.+++..++..++++|+|++..++..+..+++.|+++
T Consensus 240 LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 99999999999999999999987777778888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHh
Q 005088 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAH 370 (715)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~ 370 (715)
.|+.++.+.+..+++.|+|+|+|++.+++..+..+.+.|+++.|+.++.+.+..++..|+++|+|++... ...+.+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999999999999999988888999999999999999999999999999999999999865 677899
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHH
Q 005088 371 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 450 (715)
Q Consensus 371 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (715)
.|+++.|+++|+++++.++..++++|.|+....+.. +..+ .. ...+...|.++.
T Consensus 400 ~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~------~~~~------------~~--------~~~iee~ggl~~ 453 (510)
T 3ul1_B 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL------GETE------------KL--------SIMIEECGGLDK 453 (510)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT------TCHH------------HH--------HHHHHHTTHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc------cchH------------HH--------HHHHHHcCcHHH
Confidence 999999999999999999999999999986321100 0000 00 001123345666
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 451 LLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 451 L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
|-.+..+.+.++...|...|-....
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 6667677889999999999877644
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.7e-35 Score=317.74 Aligned_cols=366 Identities=22% Similarity=0.306 Sum_probs=318.3
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
...+|.++.+|... .++.++.+|+|+|.|++. +++.+..+++.|++|.|+.+|.+++. +++.
T Consensus 118 ~G~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e 180 (529)
T 3tpo_A 118 AGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISE 180 (529)
T ss_dssp TTHHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHH
T ss_pred CCCHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHH
Confidence 34677777777654 357789999999999998 57888899999999999999999888 9999
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
.|+|+|+||+ ++++++..+...|+++.|+.+|...+..... ..+++.++|+|.+++.+...........+++|.|+
T Consensus 181 ~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 257 (529)
T 3tpo_A 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 257 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC---HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH---HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH
Confidence 9999999999 7899999999999999999999876432111 26788999999999987666666666678999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l 293 (715)
.++.+++++++..++++|.+++.+.+.....+.+.|+++.|+.++.+++..++..++++|+|++.+++.....+++.|++
T Consensus 258 ~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 258 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Confidence 99999999999999999999998777778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHH
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIA 369 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~ 369 (715)
+.|+.++.+.+..++..|+|+|+|++.+++.....+.+.|+++.|+.++.+++..++..|+++|+|++... ...+.
T Consensus 338 ~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~ 417 (529)
T 3tpo_A 338 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLV 417 (529)
T ss_dssp GGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999865 57789
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhccCCC-------chhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHH
Q 005088 370 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-------DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 442 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 442 (715)
+.|+++.|+++|.++++.++..++++|.|+.... .....+.+.|
T Consensus 418 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g----------------------------- 468 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG----------------------------- 468 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT-----------------------------
T ss_pred HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCC-----------------------------
Confidence 9999999999999999999999999999985311 1111233344
Q ss_pred HhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 005088 443 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 474 (715)
Q Consensus 443 ~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 474 (715)
.++.|-.+..+.+.++...|...|-..-
T Consensus 469 ----gl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 469 ----GLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp ----CHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred ----cHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 4455555667778889999988887664
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-35 Score=327.39 Aligned_cols=432 Identities=16% Similarity=0.142 Sum_probs=348.6
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
..++.+++++.+. +..++..|+++|.+++.++..|..+.+.|+ |.|+.++++.+. .++..|
T Consensus 290 G~v~~li~Ll~s~------~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~------------~vr~~A 350 (810)
T 3now_A 290 GILQMILAMATTD------DELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND------------GIRVRA 350 (810)
T ss_dssp THHHHHHHHHHSS------CHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH------------HHHHHH
Confidence 4566777776654 667889999999999999999999999885 999999987665 899999
Q ss_pred HHHHHhhc-CCh-hhHHHHHhcCC----hHHHHHHHccc--cCCCcchhhhHHHHHHHHHHHHHhccCccchhHHH-hcC
Q 005088 137 AFALGLLA-VKP-EHQQLIVDNGA----LSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEG 207 (715)
Q Consensus 137 ~~~L~~l~-~~~-~~~~~i~~~~~----l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~g 207 (715)
+++|.+++ ... +.....+..|. ++.++++|.++ +. ++++.|+|+|.+|+. .+..+..+. +.|
T Consensus 351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~--------~v~~~AveaLayLS~-~~~vk~~lv~d~g 421 (810)
T 3now_A 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK--------DIRRWAADGLAYLTL-DAECKEKLIEDKA 421 (810)
T ss_dssp HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCS--------SHHHHHHHHHHHHTT-SHHHHHHHHHCHH
T ss_pred HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHHHHHhC-CcHHHHHHHHccc
Confidence 99999997 221 22212233333 56677888776 33 899999999999997 455555555 679
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-----------------------------hhH---HHHHhCCChHHHH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND-----------------------------ENK---NQIVECNALPTLI 255 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-----------------------------~~~---~~~~~~g~l~~L~ 255 (715)
++|.|+.+++++++.++..|+++|.||+.+.+ ..+ ..+++.|+++.|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999997542 122 6788999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHH--HhhcC
Q 005088 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH--IVQRG 333 (715)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~ 333 (715)
.++.++++.++..|+|+|+||+. +++.+..+++.|+++.|+.+|.++++..++.|+++|+|++......... ....+
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~ 580 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhc
Confidence 99999999999999999999985 5778899999999999999999999999999999999998643322111 01246
Q ss_pred ChHHHHHHhCCC-CHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHH
Q 005088 334 AVRPLIEMLQSP-DVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 409 (715)
Q Consensus 334 ~l~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 409 (715)
++++|+.+|.++ +...+..|+++|.||+..+ +..+++.|+++.|+.++.+.++.++..|+++|+||+.+++.+..+
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~ 660 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHH
Confidence 899999999865 4455678999999999864 788899999999999999999999999999999999998888888
Q ss_pred Hh-hccccccccchhhhh-hhhhHHHHHHH--------HHHHHHh-hhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC-C
Q 005088 410 IR-VGGVQKLQDGEFIVQ-ATKDCVAKTLK--------RLEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-D 477 (715)
Q Consensus 410 ~~-~~~i~~L~~~~~~~~-~~~~~~~~~~~--------~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~ 477 (715)
.+ .|.++.|+....... .....+.+++. ....++. .++++.|+.++.+++.+++..|+++|.|++.. .
T Consensus 661 v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 86 688888776544321 11122223222 2334456 78999999999999999999999999999764 4
Q ss_pred ccchhhhcCCcHHHHHHHhcCC---CcchhhhhHHHHHHhhhh
Q 005088 478 DQRTIFIDGGGLELLLGLLGST---NPKQQLDGAVALFKLANK 517 (715)
Q Consensus 478 ~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~aa~~L~~L~~~ 517 (715)
+....+.+.|+++.|..++... +..+...|..+|.++...
T Consensus 741 e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 741 EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 5778889999999999999654 678999999999999875
No 9
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6e-35 Score=321.06 Aligned_cols=430 Identities=22% Similarity=0.221 Sum_probs=367.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
..++.++..|.+. .+++++..++.+|.+++.+++++..+.+.|++|.|+++|+++++ +++..|
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a 121 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 121 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHH
Confidence 4577777777643 25678999999999999988899999999999999999998776 999999
Q ss_pred HHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHh
Q 005088 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (715)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 215 (715)
+++|.+++ .++..+..+.+.|+++.|+.++.+.+. .++..++.+|.+++..+++.+..+.+.|+++.|+.+
T Consensus 122 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999 667888888899999999999988653 888999999999998888899999999999999999
Q ss_pred hccCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
+++++ ...+..++.+|.+++. ++.++..+.+.|+++.|+.++.+++++++..++++|.+++...+... ...|+++
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~ 269 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLG 269 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHH
Confidence 98654 5677788999999996 67888999999999999999999999999999999999987644321 1236799
Q ss_pred HHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--CCHHHHHHHHHHHHHhHHHH------HH
Q 005088 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVI------TA 366 (715)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~------~~ 366 (715)
.|++++.+.+++++..++++|++++..++..+..+.+.|+++.|++++.+ .++.++..|+++|+|++... +.
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999999999999999999999998777888899999999999999975 44899999999999998753 56
Q ss_pred HHHhcCChHHHHHhhccCC-hhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhh-h---------------
Q 005088 367 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT-K--------------- 429 (715)
Q Consensus 367 ~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~-~--------------- 429 (715)
.+.+.|+++.|++++.+++ +.++..++++|+|++.++++...+.+.|+++.|+......... +
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~ 429 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence 7889999999999998776 6999999999999999988888999999999888754321100 0
Q ss_pred -------hHHHHHHH-------HHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHH
Q 005088 430 -------DCVAKTLK-------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 495 (715)
Q Consensus 430 -------~~~~~~~~-------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~l 495 (715)
..+..++. +.......++++.|+.++.+++++++..|+.+|.+++..++.+..+.+.|+++.|..+
T Consensus 430 ~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 01111111 1123457789999999999999999999999999999887788888999999999999
Q ss_pred hcCCCcchhhhhHHHHHHhh
Q 005088 496 LGSTNPKQQLDGAVALFKLA 515 (715)
Q Consensus 496 l~~~~~~~~~~aa~~L~~L~ 515 (715)
+.+++++++..|+++|.+|+
T Consensus 510 ~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 510 LHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999998874
No 10
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=320.92 Aligned_cols=434 Identities=22% Similarity=0.244 Sum_probs=366.7
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhc-CChHHHHhhhcCC-CCcccccCCCccchHHHhh
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~L~~lL~~~-~~~~~~~~~~~~~~~v~~~ 135 (715)
.++.++++|.+. ++.++..|+.+|.+++.+...+..++.. |+++.|+++|.+. +. +++..
T Consensus 15 ~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~------------~~~~~ 76 (644)
T 2z6h_A 15 AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETARC 76 (644)
T ss_dssp THHHHHHHHTCS------CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCH------------HHHHH
T ss_pred hHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCH------------HHHHH
Confidence 477788877743 6789999999999999987777777754 8999999999865 34 89999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHh
Q 005088 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (715)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 215 (715)
|+.+|.+++.+++.+..+.+.|+++.|+.+|.+.+. .++..++++|.+++...+..+..+.+.|+++.|+.+
T Consensus 77 A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 77 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp HHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 999999999778899999999999999999988764 999999999999998777788888889999999999
Q ss_pred hccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChH
Q 005088 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (715)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~ 294 (715)
++++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++. ...++..++.+|.+++. ++..+..+.+.|+++
T Consensus 149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 227 (644)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHH
T ss_pred HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence 9999999999999999999987899999999999999999999886 46778889999999975 466778888888777
Q ss_pred HHHhhhc---------------------------------------cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCCh
Q 005088 295 PVIGLLS---------------------------------------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (715)
Q Consensus 295 ~L~~ll~---------------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 335 (715)
.|+.++. +.+++++..++++|++++..++..+..+.+.|++
T Consensus 228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v 307 (644)
T 2z6h_A 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307 (644)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 7766554 4556777778888888877667778888889999
Q ss_pred HHHHHHhCC-C-CHHHHHHHHHHHHHhHHHH------HHHHHhcCChHHHHHhhccCC-hhHHHHHHHHHHhccCCCchh
Q 005088 336 RPLIEMLQS-P-DVQLREMSAFALGRLAQVI------TAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNV 406 (715)
Q Consensus 336 ~~L~~~L~~-~-~~~v~~~a~~~L~~l~~~~------~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 406 (715)
+.|+.++.+ + .+.++..|+++|+||+... +..+.+.|+++.|+++|.+.+ +.++..++++|+|++.+++++
T Consensus 308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~ 387 (644)
T 2z6h_A 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 387 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH
Confidence 999999976 3 3899999999999998632 556788999999999998765 799999999999999998888
Q ss_pred hHHHhhccccccccchhhhhh--------------------hhh---HHHHHHHH-------HHHHHhhhhHHHHHHHHh
Q 005088 407 ADFIRVGGVQKLQDGEFIVQA--------------------TKD---CVAKTLKR-------LEEKIHGRVLNHLLYLMR 456 (715)
Q Consensus 407 ~~l~~~~~i~~L~~~~~~~~~--------------------~~~---~~~~~~~~-------~~~~~~~~~l~~L~~ll~ 456 (715)
..+.+.|+++.|+........ ... .+..++.+ .......++++.|+++|.
T Consensus 388 ~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 388 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 467 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc
Confidence 899999999998875443110 000 11111111 123457789999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 457 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 457 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
+.+++++..|+.+|.+++..++.+..+.+.|+++.|..++.+++++++..|+++|.+|+.+.
T Consensus 468 ~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 468 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999988778888889999999999999999999999999999998865
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=304.10 Aligned_cols=362 Identities=19% Similarity=0.217 Sum_probs=298.1
Q ss_pred HHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCCh-
Q 005088 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL- 159 (715)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l- 159 (715)
+.++.|..+..+++.|..+++.|++|.|+++|+..+.+.....+...+++++..|+|+|.||+ ++|+......+.+++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 478899999999999999999999999999999754311111122245699999999999999 888888877777777
Q ss_pred ---------HHHHHHHcccc-CCC-----cchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc------
Q 005088 160 ---------SHLVNLLKRHM-DSN-----CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------ 218 (715)
Q Consensus 160 ---------~~L~~lL~~~~-~~~-----~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~------ 218 (715)
+.+++++.... ... ...+....+..|+|+|.|++. ++++|..+.+.|+++.|+.++..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 66667776653 111 011112344599999999976 58899999999999999999952
Q ss_pred -----CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHHcC
Q 005088 219 -----TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAG 291 (715)
Q Consensus 219 -----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g 291 (715)
.++.++..|+++|.||+.+++.++..+.. .|+++.|+.+|.+++++++..++++|+||+.. ++..+..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 34678999999999999877777777755 45699999999999999999999999999875 567888999999
Q ss_pred ChHHHHhhh-ccCChHHHHHHHHHHHHHhcCCcchhHHHh-hcCChHHHHHHhCCCCH----HHHHHHHHHHHHhHH---
Q 005088 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ--- 362 (715)
Q Consensus 292 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~~~----~v~~~a~~~L~~l~~--- 362 (715)
+++.|+++| .+.+..+++.++.+|+||+.++++++..+. ..|+++.|+.+|.+.++ .+++.|+++|.||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 556789999999999999975666677776 78999999999987544 599999999999996
Q ss_pred -HH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc-CCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHH
Q 005088 363 -VI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 438 (715)
Q Consensus 363 -~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~ 438 (715)
.. +..+.+.|+++.|+.+|.+++..++..|+++|+|++ .+++++..+.+.|+
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~------------------------ 422 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA------------------------ 422 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH------------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC------------------------
Confidence 23 788899999999999999999999999999999998 56778877887774
Q ss_pred HHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 005088 439 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 477 (715)
Q Consensus 439 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 477 (715)
++.|+.+|.+.++.++..|+.+|.||+...
T Consensus 423 ---------I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 423 ---------VSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp ---------HHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred ---------HHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 556778888999999999999999997654
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.8e-35 Score=309.83 Aligned_cols=366 Identities=19% Similarity=0.187 Sum_probs=308.3
Q ss_pred HhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhh
Q 005088 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (715)
Q Consensus 101 ~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (715)
...+.+|.|+.+|.+.+. +++..|+++|.+++ .+++.+..+++.|+||.|+.+|++.+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~------------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~-------- 104 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLD------------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-------- 104 (584)
T ss_dssp CCCCCHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------
T ss_pred cccccHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------
Confidence 356889999999998877 99999999999999 799999999999999999999998765
Q ss_pred HHHHHHHHHHHHHhcc-CccchhHHHhcCCcHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 005088 180 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l 257 (715)
++++.|+++|.||+.+ +++++..+.+.|+++.|+.+|.+ .+.++++.++++|++|+. ++.++..+.+ ++++.|+++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~L 182 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDE 182 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHH
Confidence 9999999999999985 68899999999999999999997 578999999999999997 6888888886 579999998
Q ss_pred hc------------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHhhhcc------CChHHHHHHH
Q 005088 258 LR------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAA 312 (715)
Q Consensus 258 l~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~~~~~a~ 312 (715)
+. .++++++..|+++|.||+..+++.++.+.+. |+++.|+.++.+ .+...++.|+
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 71 2367999999999999998888888888885 556799999874 4568899999
Q ss_pred HHHHHHhcCCc-------------------------chhHHHhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHhHHHH--
Q 005088 313 LLLGQFAATDS-------------------------DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVI-- 364 (715)
Q Consensus 313 ~~L~~l~~~~~-------------------------~~~~~~~~~~~l~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~-- 364 (715)
++|.||+.... .....+.+.++++.|+.+|. +.++.+++.|+++|.||+...
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 99999985411 11122334456678889995 468999999999999998643
Q ss_pred -----HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHH
Q 005088 365 -----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 439 (715)
Q Consensus 365 -----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~ 439 (715)
+..+.+.++++.|+++|.+++..++..|+++|+||+.++.++..+ ..|
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g-------------------------- 395 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKH-------------------------- 395 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHH--------------------------
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhC--------------------------
Confidence 445567899999999999999999999999999999888766544 444
Q ss_pred HHHHhhhhHHHHHHHHhhh--------hhhHHHHHHHHHHhhcC-CCccchhhhcCCcHHHHHHHhcCC--CcchhhhhH
Q 005088 440 EEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGA 508 (715)
Q Consensus 440 ~~~~~~~~l~~L~~ll~~~--------~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~aa 508 (715)
+++.|+.+|.++ ..+++..|+++|+||+. +++++..+.+.|+++.|++++.++ .+.+++.|+
T Consensus 396 -------~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 396 -------AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp -------HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred -------CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 566777888776 35788999999999954 567888889999999999999986 788999999
Q ss_pred HHHHHhhhhccccc
Q 005088 509 VALFKLANKATTLS 522 (715)
Q Consensus 509 ~~L~~L~~~~~~~~ 522 (715)
++|++|..+.+..+
T Consensus 469 ~vL~nl~~~~elr~ 482 (584)
T 3l6x_A 469 LVLQTIWGYKELRK 482 (584)
T ss_dssp HHHHHHHTSHHHHH
T ss_pred HHHHHHHcCHHHHH
Confidence 99999998654333
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.8e-34 Score=305.92 Aligned_cols=371 Identities=19% Similarity=0.224 Sum_probs=305.3
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
.++.+|.+|.+. ++.++..|+++|.+++. +++++..+++.|+||.|+++|++++. +++..|
T Consensus 49 ~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 49 ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 378888888765 66789999999999997 78999999999999999999999877 999999
Q ss_pred HHHHHhhc-C-ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH
Q 005088 137 AFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 137 ~~~L~~l~-~-~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 214 (715)
+++|.||+ . +++++..+.+.|+++.|+.+|.+..+. ++++.++++|++|+. ++.++..+.. ++++.|+.
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 99999999 4 599999999999999999999975432 889999999999997 6778887775 67999999
Q ss_pred hhc------------------cCCHHHHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHhhcC------CCHHHHHHH
Q 005088 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (715)
Q Consensus 215 ll~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~v~~~a 269 (715)
++. ..++.++..|+++|.||+..++..+..+.+. |+++.|+.++++ .+...+..|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 871 2357999999999999998777778888885 556799999874 466889999
Q ss_pred HHHHHHhhcCChhH-------------------------HHHHHHcCChHHHHhhhcc-CChHHHHHHHHHHHHHhcCCc
Q 005088 270 VGVIGNLVHSSPNI-------------------------KKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDS 323 (715)
Q Consensus 270 ~~~L~~L~~~~~~~-------------------------~~~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 323 (715)
+++|.||+...... ...+...++++.++.+|.. .++.+++.|+++|.|++.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999997642100 0111122345677888864 569999999999999987652
Q ss_pred ----chhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccC--------ChhHHH
Q 005088 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSK--------NGSLQH 390 (715)
Q Consensus 324 ----~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~--------~~~v~~ 390 (715)
..+..+.+.++++.|+.+|.+++..+++.|+++|+||+... -+.++..|+++.|+++|.+. +..++.
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~ 421 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHH
Confidence 23345566789999999999999999999999999999988 33344789999999999765 467899
Q ss_pred HHHHHHHhcc-CCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhh--hhhHHHHHH
Q 005088 391 NAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVA 467 (715)
Q Consensus 391 ~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~ 467 (715)
.|+++|.|++ .++++...+.+.|+ ++.|+.++.+. .+.++..|+
T Consensus 422 ~a~~tL~NL~a~~~~~~~~I~~~g~---------------------------------I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 422 SILNTINEVIAENLEAAKKLRETQG---------------------------------IEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTH---------------------------------HHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCC---------------------------------hHHHHHHHhCCCCChHHHHHHH
Confidence 9999999995 56888888887775 55677888876 789999999
Q ss_pred HHHHhhcCCCccchhhhcCCc
Q 005088 468 LALAHLCSPDDQRTIFIDGGG 488 (715)
Q Consensus 468 ~aL~~l~~~~~~~~~~~~~~~ 488 (715)
.+|+++....+.+..+.+.|+
T Consensus 469 ~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 469 LVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHHHHHcCHHHHHHHHHcCC
Confidence 999999998888777666554
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.7e-33 Score=309.55 Aligned_cols=432 Identities=21% Similarity=0.234 Sum_probs=361.8
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhc-CChHHHHhhhcCC-CCcccccCCCccchHHH
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~L~~lL~~~-~~~~~~~~~~~~~~~v~ 133 (715)
...++.++++|.+. ++.++..|+.+|.+++.++..+..++.. |+++.|+++|.+. +. +++
T Consensus 16 ~~~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~------------~~~ 77 (529)
T 1jdh_A 16 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETA 77 (529)
T ss_dssp -CHHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCH------------HHH
T ss_pred HhhHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCH------------HHH
Confidence 44578888877743 7778999999999999987777777764 8999999999754 44 899
Q ss_pred hhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
..++++|.+++.+++.+..+.+.|+++.|+++|++.++ +++..++++|.+++..++..+..+.+.|+++.|+
T Consensus 78 ~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 149 (529)
T 1jdh_A 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence 99999999999778899999999999999999998764 8999999999999988778888888999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 292 (715)
.++.++++.++..++.+|.+++.++++.+..+.+.|+++.|+.+++++ +...+..++.+|.+++. ++..+..+.+.|+
T Consensus 150 ~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~ 228 (529)
T 1jdh_A 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGG 228 (529)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCC
Confidence 999999999999999999999988899999999999999999999876 45667778999999976 4677888899999
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHHH
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGIA 369 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~ 369 (715)
++.|+.++.+.+++++..++++|.+++...+... ...++++.|++++.+.++.++..++++|++++... +..+.
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999987543321 22478999999999999999999999999998864 78888
Q ss_pred hcCChHHHHHhhcc--CChhHHHHHHHHHHhccCCC-c---hhhHHHhhccccccccchhhhhh--hhhHHHHHHHH---
Q 005088 370 HNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNE-D---NVADFIRVGGVQKLQDGEFIVQA--TKDCVAKTLKR--- 438 (715)
Q Consensus 370 ~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~-~---~~~~l~~~~~i~~L~~~~~~~~~--~~~~~~~~~~~--- 438 (715)
+.|+++.|++++.+ .++.++..|+++|+|++... + .+..+.+.|+++.|.+....... ....+.+.+.+
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 99999999999964 34899999999999998653 2 35678889999998875543321 11122222222
Q ss_pred ----HHHHHhhhhHHHHHHHHhhhhhhHHHH----------------------HHHHHHhhcCCCccchhhhcCCcHHHH
Q 005088 439 ----LEEKIHGRVLNHLLYLMRVAEKGVQRR----------------------VALALAHLCSPDDQRTIFIDGGGLELL 492 (715)
Q Consensus 439 ----~~~~~~~~~l~~L~~ll~~~~~~v~~~----------------------a~~aL~~l~~~~~~~~~~~~~~~i~~L 492 (715)
.......++++.|+.++.+.++++|.. ++.+|++++..++++..+.+.|+++.|
T Consensus 386 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l 465 (529)
T 1jdh_A 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465 (529)
T ss_dssp SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHH
Confidence 234557789999999999988777764 555666687777778888999999999
Q ss_pred HHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 493 LGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 493 ~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
+.++.++++.++..|+++|.+|+.+
T Consensus 466 ~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 466 VQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999854
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.4e-34 Score=325.27 Aligned_cols=433 Identities=22% Similarity=0.224 Sum_probs=367.1
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 58 ~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
.++.++..|... .++.++..|+.+|.+++.+++++..+.+.|+++.|+++|++.+. .++..|+
T Consensus 193 ~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~ 255 (780)
T 2z6g_A 193 MVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAI 255 (780)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred hHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 455555555432 26778999999999999988888889999999999999998876 9999999
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 216 (715)
++|.+|+ ..+..+..+.+.|+++.|+.+|.+.+. .++..++.+|.+++..+++.+..+...|+++.|+.++
T Consensus 256 ~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL 327 (780)
T 2z6g_A 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327 (780)
T ss_dssp HHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence 9999999 777888888899999999999988543 8889999999999987888898899999999999999
Q ss_pred ccCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005088 217 EFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (715)
Q Consensus 217 ~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~ 295 (715)
++.+ ...+..++.+|.+|+. .+.++..+.+.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~ 403 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGT 403 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHH
Confidence 8765 4566788999999996 6788889999999999999999999999999999999998655331 112457899
Q ss_pred HHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CC-HHHHHHHHHHHHHhHHHH------HHH
Q 005088 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PD-VQLREMSAFALGRLAQVI------TAG 367 (715)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~-~~v~~~a~~~L~~l~~~~------~~~ 367 (715)
|+.++.+.+++++..|+++|++++.+++..+..+.+.|+++.|+.+|.+ ++ ..++..|+++|+||+... +..
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999999999999999998877888889999999999999976 33 489999999999998643 457
Q ss_pred HHhcCChHHHHHhhccCC-hhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhh-------------------
Q 005088 368 IAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA------------------- 427 (715)
Q Consensus 368 l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~------------------- 427 (715)
+...++++.|+++|.+.+ +.++..|+++|+||+..++++..+.+.|+++.|+..+.....
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 788999999999998766 499999999999999988888889999999988875432110
Q ss_pred ----hhhHHHHHHHHH-------HHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHh
Q 005088 428 ----TKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 496 (715)
Q Consensus 428 ----~~~~~~~~~~~~-------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll 496 (715)
....+..++.++ ..+...++++.|+.+|.++++.++..|+.+|++++..++.+..+.+.|+++.|..++
T Consensus 564 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 001111222221 224578899999999999999999999999999998888889999999999999999
Q ss_pred cCCCcchhhhhHHHHHHhhhhcc
Q 005088 497 GSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 497 ~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
.++++.+|..|+++|.+|+.+.+
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999999998753
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=7.8e-34 Score=305.48 Aligned_cols=399 Identities=16% Similarity=0.217 Sum_probs=340.0
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc--ChhhHHHHHhc-CChHHHHhhhcCC-CCcccccCCCccchHHHh
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~-g~v~~L~~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (715)
++.+++.|.+. ++.++..|+..|..+.. .......+++. |++|.|+++|++. +. .++.
T Consensus 22 l~~l~~~l~s~------~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~------------~v~~ 83 (450)
T 2jdq_A 22 TSDMIEMIFSK------SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC------------TLQF 83 (450)
T ss_dssp CHHHHHHHHSS------CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCH------------HHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCH------------HHHH
Confidence 67777777643 67789999999999754 22233456676 9999999999887 45 9999
Q ss_pred hHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
.|+++|.+++ .+++....+...|+++.|+.+|.+.++ ++++.++++|.+++..++..+..+...|+++.|+
T Consensus 84 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 155 (450)
T 2jdq_A 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLL 155 (450)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 9999999999 678888888899999999999998654 9999999999999988888888888899999999
Q ss_pred Hhhcc-CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcC
Q 005088 214 ELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (715)
Q Consensus 214 ~ll~~-~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g 291 (715)
.++.+ .++.++..++++|.+++.+. +.....+. .++++.|+.++.++++.++..++++|.+++...++....+...|
T Consensus 156 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 156 QLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 99985 78999999999999999754 33322233 68999999999999999999999999999987777778888899
Q ss_pred ChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHH
Q 005088 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGI 368 (715)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l 368 (715)
+++.|+.++.+.++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++... ...+
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~ 314 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999887777777888899999999999999999999999999999644 5667
Q ss_pred HhcCChHHHHHhhccCChhHHHHHHHHHHhccCC--CchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhh
Q 005088 369 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 446 (715)
Q Consensus 369 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (715)
.+.|+++.|+.++.++++.++..|+++|+|++.. ++....+.+. +
T Consensus 315 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~---------------------------------~ 361 (450)
T 2jdq_A 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL---------------------------------G 361 (450)
T ss_dssp HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---------------------------------T
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC---------------------------------C
Confidence 7889999999999999999999999999999753 3344444443 4
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc------------cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHh
Q 005088 447 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 514 (715)
Q Consensus 447 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L 514 (715)
+++.|+.++.+.++.++..|+.+|.+++...+ ....+.+.||++.|..++.+++..++..|..+|.++
T Consensus 362 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 362 CIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 67788889999999999999999999976432 234566779999999999999999999999999877
Q ss_pred hhh
Q 005088 515 ANK 517 (715)
Q Consensus 515 ~~~ 517 (715)
-..
T Consensus 442 ~~~ 444 (450)
T 2jdq_A 442 FGT 444 (450)
T ss_dssp HCC
T ss_pred CCc
Confidence 643
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=295.48 Aligned_cols=365 Identities=19% Similarity=0.214 Sum_probs=294.6
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCC----cchhhhH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----CSRAVNS 180 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~----~~~~~~~ 180 (715)
.++.|+..+.+.+. + ...+.|..+..+++.|..+.+.|++|.|+++|...+.++ ......+
T Consensus 33 ~~~~l~~~~~~~~~------------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK------------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ------------CC------------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHhcCCCH------------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 36677777766655 3 378889999988899999999999999999999754310 0001139
Q ss_pred HHHHHHHHHHHHhccCccchhHHHhcCCc----------HHHHHhhccCC--HH-----HHH-------HHHHHHHHHhc
Q 005088 181 VIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRTLAF 236 (715)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~L~~ 236 (715)
++..|+|+|.|++.+.++......+.+++ +.+++++.+.. .+ ++. .|+++|.|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999998888877777777777 55666666542 11 433 89999999986
Q ss_pred CChhhHHHHHhCCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHH-cCChHHHHhhhccCC
Q 005088 237 KNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCC 304 (715)
Q Consensus 237 ~~~~~~~~~~~~g~l~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~l~~L~~ll~~~~ 304 (715)
++++|..+.+.|+++.|+.++.. .++.++..|+|+|.||+.+++..+..+.. .|+++.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 69999999999999999999952 24678999999999999887767666655 456999999999999
Q ss_pred hHHHHHHHHHHHHHhcC-CcchhHHHhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHH---HHHHH-hcCChHHHH
Q 005088 305 SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVI---TAGIA-HNGGLVPLL 378 (715)
Q Consensus 305 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~---~~~l~-~~~~l~~L~ 378 (715)
++++..|+++|+|++.+ ++.++..+.+.|+++.|+++| .+.++.+++.|+.+|+||+... +..+. ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999875 567888899999999999975 5578999999999999999833 66666 789999999
Q ss_pred HhhccCCh----hHHHHHHHHHHhccC----CCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHH
Q 005088 379 KLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 450 (715)
Q Consensus 379 ~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (715)
++|.+.+. .++..|+++|+||+. +++++..+.+.| .++.
T Consensus 337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---------------------------------~i~~ 383 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---------------------------------CLQT 383 (458)
T ss_dssp HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---------------------------------cHHH
Confidence 99976654 499999999999984 677777777766 5667
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcC-CCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 451 LLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 451 L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
|+.+|.+++..++..|+++|.|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.||+.+.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999984 5678888899999999999999999999999999999999874
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.7e-33 Score=300.10 Aligned_cols=358 Identities=19% Similarity=0.258 Sum_probs=302.9
Q ss_pred ChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 105 ~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
.+|.|+.+|++++. +++..|+++|.+++ +++..+..+.+.|++|.|+.+|++.+. +++.
T Consensus 3 ~l~~lv~~L~s~~~------------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~ 62 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQ 62 (457)
T ss_dssp CHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHH
T ss_pred CHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999999887 99999999999999 777788899999999999999997654 8999
Q ss_pred HHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc---
Q 005088 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--- 259 (715)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~--- 259 (715)
.|+++|.||+.++++++..+.+.|+++.|+.+|. ++++++++.++++|+||+.+ +.++..+.+ |+++.|+.++.
T Consensus 63 ~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc
Confidence 9999999999977999999999999999999999 88999999999999999975 788888888 99999999993
Q ss_pred -----C--------CCHHHHHHHHHHHHHhhcCChhHHHHHHHc-CChHHHHhhhcc------CChHHHHHHHHHHHHHh
Q 005088 260 -----S--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (715)
Q Consensus 260 -----~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~ 319 (715)
+ .+.+++..|+|+|+||+.. ++.+..+.+. |+++.|+.+|.+ .+..+...++++|.|++
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 2 2467778999999999877 7888888887 999999999985 35667888899999986
Q ss_pred cC--------------------------------------------------CcchhHHHhhcCChHHHHHHhCC-CCHH
Q 005088 320 AT--------------------------------------------------DSDCKVHIVQRGAVRPLIEMLQS-PDVQ 348 (715)
Q Consensus 320 ~~--------------------------------------------------~~~~~~~~~~~~~l~~L~~~L~~-~~~~ 348 (715)
.. .+.....+.+.++++.|+.+|.+ .++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 21 11233445667788999999965 5799
Q ss_pred HHHHHHHHHHHhHHHH--------HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhcccccccc
Q 005088 349 LREMSAFALGRLAQVI--------TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 420 (715)
Q Consensus 349 v~~~a~~~L~~l~~~~--------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ 420 (715)
+++.|+|+|+|++... +..+.+.|+++.|+++|.+++..++..|+|+|.|++.++++...+ ..|
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~------- 371 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQ------- 371 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHH-------
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHh-------
Confidence 9999999999998754 123346899999999999999999999999999999876544332 223
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhh------hhHHHHHHHHHHhhcC-CCccchhhhcCCcHHHHH
Q 005088 421 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLL 493 (715)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~ 493 (715)
+++.|+++|.+++ +++...++.+|.++.. .++....+.+.||++.|+
T Consensus 372 --------------------------~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 372 --------------------------VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp --------------------------THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred --------------------------hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 5667778887763 4688899999999965 455777888889999999
Q ss_pred HHhcCC-CcchhhhhHHHHHHhhhhcc
Q 005088 494 GLLGST-NPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 494 ~ll~~~-~~~~~~~aa~~L~~L~~~~~ 519 (715)
+++.++ ++.+++.|++.|.++..+.+
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 999999 99999999999999887653
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.1e-33 Score=297.28 Aligned_cols=361 Identities=16% Similarity=0.216 Sum_probs=297.5
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
+|.++..|.+. +++++..|+++|.+++. ++..+..+++.|++|.|+++|++++. +++..|+
T Consensus 4 l~~lv~~L~s~------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~ 65 (457)
T 1xm9_A 4 IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAA 65 (457)
T ss_dssp HHHHHHHHHSS------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 67788888765 56789999999999997 46677789999999999999998776 9999999
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHc-cccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHh
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 215 (715)
++|.||+ ++++++..+++.|++|.|+++|. +.+. ++++.++|+|+|++.+ +..+..+.+ |+++.|+.+
T Consensus 66 ~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHH
Confidence 9999999 66999999999999999999998 4443 9999999999999986 778888888 999999999
Q ss_pred hc--------c--------CCHHHHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHhhcC------CCHHHHHHHHHH
Q 005088 216 LE--------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGV 272 (715)
Q Consensus 216 l~--------~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~v~~~a~~~ 272 (715)
+. + .++.+...|+++|+||+.+ ++++..+.+. |+++.|+.++.+ .+..++..++.+
T Consensus 136 l~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp TTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred HhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 93 2 2467778999999999975 8899999997 999999999985 456788889999
Q ss_pred HHHhhcCC--------------------------------------------------hhHHHHHHHcCChHHHHhhhcc
Q 005088 273 IGNLVHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS 302 (715)
Q Consensus 273 L~~L~~~~--------------------------------------------------~~~~~~~~~~g~l~~L~~ll~~ 302 (715)
|.||+... +...+.+...|+++.++.+|.+
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 99986321 0011223345567888888875
Q ss_pred C-ChHHHHHHHHHHHHHhcCCcch-----hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChH
Q 005088 303 C-CSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLV 375 (715)
Q Consensus 303 ~-~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~ 375 (715)
. ++.+++.|+|+|+|++.++... +..+.+.|++|.|+++|.+++..++..|+++|.|++.+. ...++..++++
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~ 374 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFP 374 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhH
Confidence 5 5899999999999999866432 223446899999999999999999999999999999877 55566678999
Q ss_pred HHHHhhccCC------hhHHHHHHHHHHhccC-CCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhH
Q 005088 376 PLLKLLDSKN------GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 448 (715)
Q Consensus 376 ~L~~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (715)
.|+++|.+.+ .++...++++|.|+.. ++++...+.+.| .+
T Consensus 375 ~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g---------------------------------~l 421 (457)
T 1xm9_A 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS---------------------------------ML 421 (457)
T ss_dssp HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH---------------------------------HH
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC---------------------------------CH
Confidence 9999997764 3688899999999964 455555555544 56
Q ss_pred HHHHHHHhhh-hhhHHHHHHHHHHhhcCCCccch
Q 005088 449 NHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRT 481 (715)
Q Consensus 449 ~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~ 481 (715)
+.|+.++.++ ++.++..|+.+|.++....+.+.
T Consensus 422 ~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 7788899999 89999999999999987766543
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.7e-32 Score=307.76 Aligned_cols=432 Identities=21% Similarity=0.232 Sum_probs=361.2
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHh-cCChHHHHhhhcCC-CCcccccCCCccchHHH
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE-GGAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~v~~L~~lL~~~-~~~~~~~~~~~~~~~v~ 133 (715)
...++.++..|.+ .++.++..|+.+|.+++.+...+..+.. .|+++.|+.+|++. +. +++
T Consensus 149 ~g~ip~Lv~lL~~------~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~------------~vr 210 (780)
T 2z6g_A 149 TRAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETA 210 (780)
T ss_dssp HHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCH------------HHH
T ss_pred hCCHHHHHHHHCC------CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCH------------HHH
Confidence 3456666666653 2677999999999999998777777775 48999999999765 44 899
Q ss_pred hhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH
Q 005088 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 213 (715)
..|+++|.+|+..++.+..+...|+++.|+.+|++.+. .++..|+++|.+++...+..+..+.+.|+++.|+
T Consensus 211 ~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv 282 (780)
T 2z6g_A 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV 282 (780)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHH
Confidence 99999999999778889999999999999999988754 9999999999999988888888888899999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHcCC
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 292 (715)
.++.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+|+. .+..+..+++.|+
T Consensus 283 ~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~ 361 (780)
T 2z6g_A 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGG 361 (780)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhch
Confidence 9999999999999999999999878899999999999999999999875 4566788999999986 4567788999999
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHHH
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGIA 369 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~ 369 (715)
++.|+.++.+.+..++..++++|.+++...+.. ....++++.|+.+|.+.++.++..|+++|++|+... +..+.
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999998755332 123468899999999999999999999999999864 77888
Q ss_pred hcCChHHHHHhhcc-CC-hhHHHHHHHHHHhccCCC-c---hhhHHHhhccccccccchhhhhh--hhhHHHHHHHHH--
Q 005088 370 HNGGLVPLLKLLDS-KN-GSLQHNAAFALYGLADNE-D---NVADFIRVGGVQKLQDGEFIVQA--TKDCVAKTLKRL-- 439 (715)
Q Consensus 370 ~~~~l~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~-~---~~~~l~~~~~i~~L~~~~~~~~~--~~~~~~~~~~~~-- 439 (715)
+.|+++.|+++|.+ .+ ..++..|+++|+||+... + .+..+...|+++.|.+.+..... ....+.+++.++
T Consensus 439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 99999999999965 33 489999999999998643 2 24577888999988875543321 112222333222
Q ss_pred -----HHHHhhhhHHHHHHHHhhhh----------------------hhHHHHHHHHHHhhcCCCccchhhhcCCcHHHH
Q 005088 440 -----EEKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 492 (715)
Q Consensus 440 -----~~~~~~~~l~~L~~ll~~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L 492 (715)
..+...++++.|+.+|.+.+ .+++..++.+|++|+..+.++..+.+.|+++.|
T Consensus 519 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 598 (780)
T 2z6g_A 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598 (780)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHH
Confidence 33446789999999998764 346778999999999888888888899999999
Q ss_pred HHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 493 LGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 493 ~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
+.++.++++.++..|+.+|.+|+.+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999854
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1e-31 Score=294.49 Aligned_cols=374 Identities=20% Similarity=0.277 Sum_probs=315.0
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
+|.+++.|.+. .++.++..|+++|.+++.+ ++.+..+++.|++|.|+.+|.+++. .++..|+
T Consensus 119 v~~Lv~lL~~~-----~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~ 181 (528)
T 4b8j_A 119 VPRFVQFLTRE-----DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD------------DVREQAV 181 (528)
T ss_dssp HHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred HHHHHHHhCCC-----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH------------HHHHHHH
Confidence 45555555433 2377899999999999995 8899999999999999999998766 9999999
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 216 (715)
|+|++|+ +++.++..+...|+++.|+.+|....+ ..++..++|+|.+++...+... .....|+++.|+.++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~-------~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL 253 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK-------LSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLI 253 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC-------HHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHT
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHH
Confidence 9999999 888999999999999999999954433 2999999999999997654433 445689999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHH
Q 005088 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (715)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L 296 (715)
.++++.++..++++|.+++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|
T Consensus 254 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCL 333 (528)
T ss_dssp TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHH
Confidence 99999999999999999998777777788899999999999999999999999999999999888888889999999999
Q ss_pred HhhhccC-ChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhc
Q 005088 297 IGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHN 371 (715)
Q Consensus 297 ~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~ 371 (715)
+.+|.+. ++.++..|+++|+|++.+++.....+.+.|+++.|+.+|.+.++.++..|+++|+|++... ...+.+.
T Consensus 334 ~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (528)
T 4b8j_A 334 LSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSE 413 (528)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 9999998 8999999999999999877777888889999999999999999999999999999999882 7778899
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHH
Q 005088 372 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 451 (715)
Q Consensus 372 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 451 (715)
|+++.|+.++.+.++.++..++++|.+++...+........+ .. .....+...+.++.+
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~--------------------~~~~~i~~~~~~~~l 472 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD-VN--------------------VFSQMIDEAEGLEKI 472 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS-CC--------------------HHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccc-cc--------------------HHHHHHHHCCcHHHH
Confidence 999999999999999999999999999975432211110000 00 001122234567777
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCCCc
Q 005088 452 LYLMRVAEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 452 ~~ll~~~~~~v~~~a~~aL~~l~~~~~ 478 (715)
..+..+.+++++..|..+|.++...++
T Consensus 473 ~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 473 ENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 888888899999999999999865543
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.2e-31 Score=291.76 Aligned_cols=374 Identities=17% Similarity=0.232 Sum_probs=316.5
Q ss_pred HHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 63 v~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
++.|...+... .++.++..|+++|.+++. +++.+..++..|+++.|+.+|++++. +++..|+|+|+
T Consensus 132 i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~aL~ 198 (530)
T 1wa5_B 132 VPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIWALG 198 (530)
T ss_dssp HHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 34444444332 256789999999999998 47888889999999999999998766 99999999999
Q ss_pred hhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCC
Q 005088 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (715)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 220 (715)
+|+ .+++.+..+...|+++.|+.++.+.+. +++..++++|.+++.............++++.|+.++.+++
T Consensus 199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d 270 (530)
T 1wa5_B 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270 (530)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC
T ss_pred HHhCCCccchHHHHHcCcHHHHHHHhccCCH--------HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC
Confidence 999 778899999999999999999988443 89999999999999765344445666899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhh
Q 005088 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (715)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 300 (715)
+.++..++++|.+|+...+.....+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.+|
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 99999999999999987777788888899999999999999999999999999999988888888888999999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHH-----H-HHHHHhcCCh
Q 005088 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV-----I-TAGIAHNGGL 374 (715)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~-----~-~~~l~~~~~l 374 (715)
.+.++.++..|+++|++++.+++.....+++.|+++.|+.+|.++++.++..|+++|++++.. . ...+.+.|++
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCH
Confidence 999999999999999999987777777888899999999999999999999999999999885 3 5677889999
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 005088 375 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 454 (715)
Q Consensus 375 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l 454 (715)
+.|+.++.+.++.++..++++|.+++...+..... ..+.... ....+...++++.|..+
T Consensus 431 ~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~--------------------~~~~l~~~g~~~~L~~L 489 (530)
T 1wa5_B 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINE--------------------NADFIEKAGGMEKIFNC 489 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCH--------------------HHHHHHHTTHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccH--------------------HHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999997543321110 0000000 01222345677888888
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCCc
Q 005088 455 MRVAEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 455 l~~~~~~v~~~a~~aL~~l~~~~~ 478 (715)
+.+++++++..|..+|.++...++
T Consensus 490 ~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 490 QQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HcCCCHHHHHHHHHHHHHHCCccc
Confidence 889999999999999999876543
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.6e-31 Score=282.59 Aligned_cols=375 Identities=19% Similarity=0.240 Sum_probs=316.4
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
..++.+++.|.+. .++.++..|+++|.+++. +++....+++.|++|.|+++|++++. +++..
T Consensus 64 ~~i~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~ 126 (450)
T 2jdq_A 64 GVVARFVEFLKRK-----ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQ 126 (450)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CcHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHH
Confidence 4566666666543 256789999999999998 57777888899999999999998766 99999
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCcHHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLV 213 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~ 213 (715)
|+++|++++ .+++.+..+...|+++.|+.++.+..+ .+++..++++|++++... +.....+. .++++.|+
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~ 198 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLS 198 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHH
Confidence 999999999 778899999999999999999986332 299999999999999755 44333333 78999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCCh
Q 005088 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (715)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l 293 (715)
.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+++...+.+.+.|++
T Consensus 199 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 199 WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 99999999999999999999998777778888889999999999999999999999999999998888877888889999
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHH
Q 005088 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIA 369 (715)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~ 369 (715)
+.|+.++.+.++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++... ...+.
T Consensus 279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999877777778888999999999999999999999999999999862 56677
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHH
Q 005088 370 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 449 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (715)
+.|+++.|++++.++++.++..++++|.+++...+..... ..+.++. ....+...+.++
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~--------------------~~~~l~~~g~~~ 417 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINP--------------------YCALIEEAYGLD 417 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCH--------------------HHHHHHHHHCHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhH--------------------HHHHHHHcCcHH
Confidence 8899999999999999999999999999997543321111 0011111 012233456778
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhcCCC
Q 005088 450 HLLYLMRVAEKGVQRRVALALAHLCSPD 477 (715)
Q Consensus 450 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 477 (715)
.|..++.+++..++..|..+|.++...+
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 8889999999999999999999986543
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=292.46 Aligned_cols=393 Identities=20% Similarity=0.202 Sum_probs=327.8
Q ss_pred HHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhc-CChHHHHHHHccccCCCcchhh
Q 005088 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN-GALSHLVNLLKRHMDSNCSRAV 178 (715)
Q Consensus 100 ~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~-~~l~~L~~lL~~~~~~~~~~~~ 178 (715)
.+..|+++.|+.+|++.+. .++..|+.+|.+++.+...+..+... |+++.|+++|.+..+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~------- 70 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQ------------VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND------- 70 (644)
T ss_dssp --CTTTHHHHHHHHTCSCH------------HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-------
T ss_pred hhhhchHHHHHHHHcCCCH------------HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-------
Confidence 4678999999999998776 99999999999999655677666654 889999999987533
Q ss_pred hHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.+++..++.+|.+++.. ++.+..+.+.|+++.|+.+++++++.++..|+++|.+++..++..+..+.+.|+++.|+.++
T Consensus 71 ~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 28999999999999974 55888888999999999999999999999999999999987677788888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCC-hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 337 (715)
.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++.+.+ ..++..++.+|++++. ++..+..+.+.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHH
Confidence 9999999999999999999888888999999999999999998765 5677889999999985 6778888999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC-CchhhHHHhhcccc
Q 005088 338 LIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQ 416 (715)
Q Consensus 338 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~ 416 (715)
|+.++.+.+..++..++++|.+++..........++++.|++++++.++.++..|+++|++|+.. ++++..+.+.|+++
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~ 308 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 99999999999999999999999876622222347899999999999999999999999999875 46788899999999
Q ss_pred ccccchhhhh---hhhhHHHHHHHHH-----------HHHHhhhhHHHHHHHHhhhh-hhHHHHHHHHHHhhcCCCccch
Q 005088 417 KLQDGEFIVQ---ATKDCVAKTLKRL-----------EEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDDQRT 481 (715)
Q Consensus 417 ~L~~~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~ 481 (715)
.|+....... .....+..++.++ ..+...+.++.|+++|.+++ +.++..|+++|.|++..++++.
T Consensus 309 ~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~ 388 (644)
T 2z6h_A 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHH
Confidence 9887655422 1112222333222 12445688999999999885 6999999999999999888888
Q ss_pred hhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 482 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 482 ~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
.+.+.|+++.|++++.+++..+|..|+|++.+
T Consensus 389 ~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence 88899999999999999888888888887765
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.3e-30 Score=260.04 Aligned_cols=279 Identities=20% Similarity=0.255 Sum_probs=240.0
Q ss_pred CCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHcccc---CCCcchhhhHHHHHHHHHHHHHhccCccchh
Q 005088 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM---DSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (715)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~---~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 201 (715)
|.+.++.+. +|+|+|.|++.++++|..+++.|+++.|+.+|.... .........++++.|+|+|.|||.+++.++.
T Consensus 42 ~~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 42 PAPVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444554444 899999999977999999999999999999996421 0000001238999999999999987777887
Q ss_pred HHHhc-CCcHHHHHhhccCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhc
Q 005088 202 RVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 202 ~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~ 278 (715)
.+... |++|.|+.+|++++++++..|+++|+||+.. ++.++..+.+.|+++.|+++| ++.+++++..++++|+||+.
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 77554 5599999999999999999999999999974 578899999999999999974 66789999999999999988
Q ss_pred CChhHHHHHH-HcCChHHHHhhhccCCh----HHHHHHHHHHHHHhc---CCcchhHHHhhcCChHHHHHHhCCCCHHHH
Q 005088 279 SSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350 (715)
Q Consensus 279 ~~~~~~~~~~-~~g~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~ 350 (715)
.+++.+..+. ..|+++.|+.+|.+.+. ++++.++++|+|++. .+++.+..+.+.|+++.|+.+|++++..++
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 6777777777 68999999999987654 589999999999986 678889999999999999999999999999
Q ss_pred HHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCc
Q 005088 351 EMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 404 (715)
Q Consensus 351 ~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 404 (715)
+.|+++|+||+... +..+.+.|+++.|++++++++..+++.|+++|.||+...+
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999543 8889999999999999999999999999999999986644
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.6e-30 Score=261.25 Aligned_cols=278 Identities=22% Similarity=0.203 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhc
Q 005088 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (715)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~ 156 (715)
..+..|+++|.+++.++++|..+++.|+++.|+.+|..... .........++.++..|+|+|.||+ ++++.+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~-~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE-MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccc-cccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34668999999999999999999999999999999963210 0000001123489999999999999 666788777654
Q ss_pred -CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhcc-CccchhHHHhcCCcHHHHHhh-ccCCHHHHHHHHHHHHH
Q 005088 157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRT 233 (715)
Q Consensus 157 -~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~ 233 (715)
|++|.|+.+|.+.+. ++++.++++|.||+.. ++.++..+.+.|+++.|+.+| +++++.+++.|+.+|++
T Consensus 126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 559999999997665 9999999999999974 567889999999999999975 66788999999999999
Q ss_pred HhcCChhhHHHHH-hCCChHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHHhhhccCCh
Q 005088 234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS 305 (715)
Q Consensus 234 L~~~~~~~~~~~~-~~g~l~~L~~ll~~~~~----~v~~~a~~~L~~L~~---~~~~~~~~~~~~g~l~~L~~ll~~~~~ 305 (715)
|+..++.++..+. ..|+++.|+.++.++++ +++..++++|.||+. .+++.++.+.+.|+++.|+.+|.+++.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9976777887777 78999999999987654 599999999999986 678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
+++++|+++|+|++.++++++..+.+.|+++.|+++|+++++.+++.|+++|.||+...
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999888899999999999999999999999999999999999999876
No 27
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=217.77 Aligned_cols=149 Identities=34% Similarity=0.499 Sum_probs=137.2
Q ss_pred chHHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH
Q 005088 537 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 616 (715)
Q Consensus 537 ~~~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 616 (715)
....++.++.+||+++.++|+.|++||.||+++|+||++||.++|+|+....|.++++++++|+.+|+|+|||++.++.+
T Consensus 24 ~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~ 103 (172)
T 3htm_A 24 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 103 (172)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGG
T ss_pred HHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHH
Confidence 34678899999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCch
Q 005088 617 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 685 (715)
Q Consensus 617 ~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 685 (715)
++.+++.+|++|+++.|+..|++++.+.++++||+.++.+|..|+.+.|++.|.+||.+||.++..+++
T Consensus 104 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 104 MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987753
No 28
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.95 E-value=2.5e-27 Score=231.64 Aligned_cols=160 Identities=21% Similarity=0.346 Sum_probs=141.8
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 616 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 616 (715)
..++.++.+|||++.++|+.|+|||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||++.++.+
T Consensus 23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~ 102 (256)
T 3hve_A 23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 102 (256)
T ss_dssp HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-C
T ss_pred HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHh
Confidence 56788999999999999999999999999999999999999887 6677799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHH
Q 005088 617 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 696 (715)
Q Consensus 617 ~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 696 (715)
++.+++.+|++|+++.|+..|+.++...++++||+.++.+|..|+++.|.+.|..|+.+||.++..+++|.+|+.+.+.+
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKE 182 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997666555
Q ss_pred HH
Q 005088 697 IH 698 (715)
Q Consensus 697 l~ 698 (715)
++
T Consensus 183 lL 184 (256)
T 3hve_A 183 VI 184 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.7e-25 Score=220.04 Aligned_cols=241 Identities=31% Similarity=0.382 Sum_probs=226.8
Q ss_pred CChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 104 g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
|+++.|+++|++++. +++..|+++|.+++ .+++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 678999999998876 99999999999999 777899999999999999999998764 999
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 262 (715)
..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|.+++..++..+..+.+.|+++.|+.++.+++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999887999999999999999999999999999999999999999878899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 342 (715)
+.++..++++|++++..++.....+.+.|+++.|+.++.+.++.++..++++|++++.+++..+..+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999999987888888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHHHH
Q 005088 343 QSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
.++++.+++.|+++|+|++...
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998754
No 30
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.94 E-value=7.3e-27 Score=231.34 Aligned_cols=160 Identities=23% Similarity=0.401 Sum_probs=143.7
Q ss_pred HHHhcCCCcccEEEEec---CeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecC------CCCHHHHHHHHHHHhcC
Q 005088 539 DQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYTG 609 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~---~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Y~~ 609 (715)
..++.++.+|||++.++ |+.|+|||.||+++|+||++||.++|+|+....|.++ ++++++|+.+++|+|||
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence 56788999999999998 9999999999999999999999999999999999998 89999999999999999
Q ss_pred CcccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhc
Q 005088 610 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 689 (715)
Q Consensus 610 ~~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l 689 (715)
++.++.+++.+++.+|++|+++.|+..|+.++.+.++++||+.++.+|..|+++.|.+.|..|+.+||.++..+++|.+|
T Consensus 104 ~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp EEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred CcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHH
Q 005088 690 IQRIIPEIH 698 (715)
Q Consensus 690 ~~~~~~~l~ 698 (715)
+.+.+.+++
T Consensus 184 ~~~~l~~lL 192 (279)
T 3i3n_A 184 PFHLIRDWL 192 (279)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 666544443
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.9e-25 Score=216.72 Aligned_cols=240 Identities=30% Similarity=0.392 Sum_probs=224.5
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (715)
|.++.|+.+|.+.+. +++..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 568999999998764 999999999999998888888899999999999999999999999999999999998
Q ss_pred CChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHH
Q 005088 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (715)
Q Consensus 237 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (715)
+++..+..+.+.|+++.|+.++.+++++++..++++|++++..++..+..+.+.|+++.|++++.+.++.++..++++|+
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHH
Q 005088 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAA 393 (715)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 393 (715)
+++..++.....+.+.|+++.|+.++.++++.++..|+++|++++... ...+.+.|+++.|+++++++++.++..|+
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 999878888788899999999999999999999999999999999744 77888999999999999999999999999
Q ss_pred HHHHhccCCCc
Q 005088 394 FALYGLADNED 404 (715)
Q Consensus 394 ~~L~~l~~~~~ 404 (715)
++|+|++....
T Consensus 234 ~~L~~l~~~~~ 244 (252)
T 4hxt_A 234 RALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHcCCC
Confidence 99999986543
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=7.1e-25 Score=215.46 Aligned_cols=239 Identities=24% Similarity=0.351 Sum_probs=220.7
Q ss_pred CChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHH
Q 005088 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (715)
Q Consensus 104 g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (715)
...+.++.+|++++. +++..|+++|.++. .+++.+..+.+.|+++.|+.+|.+.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 457899999999988 99999999998877 777788889999999999999998764 999
Q ss_pred HHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC
Q 005088 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (715)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 262 (715)
..++++|.+++.+++..+..+.+.|+++.|+.+++++++.++..|+++|.+|+.+.+.....+.+.|+++.|+.++.+++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999888899999999999999999999999999999999999999755544488899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 342 (715)
+.++..++++|++|+..++.....+.+.|+++.|+.++.+.++.++..++++|+|++..++..+..+.+.|+++.|+.++
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999988888888889999999999999999999999999999999988888888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHH
Q 005088 343 QSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (715)
.++++.+++.|+++|+||+.
T Consensus 232 ~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.6e-24 Score=213.01 Aligned_cols=237 Identities=24% Similarity=0.334 Sum_probs=218.2
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (715)
...+.++..|.+.+. +++..++++|.++...+++.+..+.+.|+++.|+.+++++++.++..|+++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 457889999998876 899999999988776567777788999999999999999999999999999999998
Q ss_pred CChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHH
Q 005088 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (715)
Q Consensus 237 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (715)
+++.++..+.+.|+++.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.+.++.++..++++|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998876665588899999999999999999999999999999
Q ss_pred HHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHH
Q 005088 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAA 393 (715)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 393 (715)
+++..++.....+.+.|+++.|+.++.++++.++..|+++|++++... +..+.+.|+++.|++++.+.++.++..|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 999888888888899999999999999999999999999999998644 77888999999999999999999999999
Q ss_pred HHHHhccC
Q 005088 394 FALYGLAD 401 (715)
Q Consensus 394 ~~L~~l~~ 401 (715)
++|.||+.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999975
No 34
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=1.3e-24 Score=219.35 Aligned_cols=148 Identities=34% Similarity=0.509 Sum_probs=131.6
Q ss_pred hHHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 538 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 538 ~~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
...++.++.++|+++.++|+.|+|||.||+++|+||++||.++|+|+....|.++++++++|+.+|+|+|||+++++.++
T Consensus 165 l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~ 244 (312)
T 3hqi_A 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKM 244 (312)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHH
T ss_pred HHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCch
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 685 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 685 (715)
+.+++.+|++|+++.|+..|+++|...++.+||..++.+|..|+++.|++.|++||..||.+++.+++
T Consensus 245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 245 ADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987753
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-23 Score=224.57 Aligned_cols=386 Identities=16% Similarity=0.131 Sum_probs=293.6
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhH-HHHHh
Q 005088 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVD 155 (715)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~i~~ 155 (715)
......+++.|...|.+..+|..+ ..+.++.|.+++++ . +++..|+-+|..+...+... ..+.
T Consensus 270 ~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~------------~ir~lAavvL~KL~~~~~~~~~si~- 333 (778)
T 3opb_A 270 LQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--E------------DVQIYSALVLVKTWSFTKLTCINLK- 333 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--G------------GGHHHHHHHHHHHTGGGTCTTCCHH-
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--H------------HHHHHHHHHHHHHhcCCCCCcCcHH-
Confidence 334455666666666678887777 55677999999864 3 78888999999988322211 1111
Q ss_pred cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHh-cCCcHHHHHhhcc-CCHHHHHHHHHHHHH
Q 005088 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLEF-TDTKVQRAAAGALRT 233 (715)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~-~~~~v~~~a~~~L~~ 233 (715)
...+.+.+.|.+... +-+..|++.|.+++. ++..+..+.+ .|+++.|+.+++. .+..+...++.+|.|
T Consensus 334 -~La~~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~N 403 (778)
T 3opb_A 334 -QLSEIFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMAN 403 (778)
T ss_dssp -HHHHHHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 134556666665432 458999999999987 6667776665 5669999999985 677899999999999
Q ss_pred HhcCChh--------------------------------------hHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005088 234 LAFKNDE--------------------------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (715)
Q Consensus 234 L~~~~~~--------------------------------------~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~ 275 (715)
|+...+. ++..+.+.|+++.|+.++.++++.++..++++|.+
T Consensus 404 Lt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~n 483 (778)
T 3opb_A 404 LSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYN 483 (778)
T ss_dssp TTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred hcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9973321 34566789999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHcCChHHHHhhhccCChH---HHHHHHHHHHHHhcCCcchhHHHh---hcCChHHHHHHhCC-CC--
Q 005088 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSE---SQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PD-- 346 (715)
Q Consensus 276 L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L~~~L~~-~~-- 346 (715)
|+.. ++.+..+++.|+++.|+.++.+.... .+..|+.+|.++....+... .+. ..|++++|+.+|.. +.
T Consensus 484 LS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 484 ITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp HHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcc
Confidence 9754 78899999999999999999887543 89999999999984332211 111 13889999999983 11
Q ss_pred ----------H-HHHHHHHHHHHHhHHHH-------HHHHHhc-CChHHHHHhhccCChhHHHHHHHHHHhccCCCchh-
Q 005088 347 ----------V-QLREMSAFALGRLAQVI-------TAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV- 406 (715)
Q Consensus 347 ----------~-~v~~~a~~~L~~l~~~~-------~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~- 406 (715)
+ .-+..|+.+|.||+... +..++.. |+++.|..+|.+.+..+|..|+++++||+.+++..
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~ 641 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIA 641 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTG
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 1 22779999999999863 6667775 99999999999999999999999999999877654
Q ss_pred hHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC-CCccchhhhc
Q 005088 407 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID 485 (715)
Q Consensus 407 ~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~ 485 (715)
..+...+. + ...+-++.|+.++++.+.++|.+|+++|.+++. .+.....+.+
T Consensus 642 ~k~~~~~~-~--------------------------~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 642 AKFFNLEN-P--------------------------QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp GGTSCCSS-H--------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HHHHhhcC-c--------------------------hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 23332110 0 011236789999999999999999999999964 5555555556
Q ss_pred C-CcHHHHHHHhcC--CCcchhhhhHHHHHHhhhh
Q 005088 486 G-GGLELLLGLLGS--TNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 486 ~-~~i~~L~~ll~~--~~~~~~~~aa~~L~~L~~~ 517 (715)
. ++++.++.++.+ ++++++..++.++.||+.-
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 5 899999999998 8999999999999999973
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.1e-22 Score=212.96 Aligned_cols=381 Identities=15% Similarity=0.115 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHhc-ChhhHHH-HHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcC
Q 005088 80 AKRATHVLAELAK-NEEVVNW-IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~-~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~ 157 (715)
...++.++..+.- .|+.+.. +...|.++.+.+.+.+... ..+...+++.|...|.+..+|..+. .+
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~-----------~~~~~a~L~lLsaACi~~~cR~~I~-~~ 296 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD-----------LQFTKELLRLLSSACIDETMRTYIT-EN 296 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC-----------HHHHHHHHHHHHHHCCSHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHhCCcHHHHHHH-Hh
Confidence 4556666776666 4655554 4568899999989865433 2666777777877889999988885 56
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (715)
+++.|..+++.. .++..|+-+|..+..........+ ....+.+.+++.+++.+-+..|++.|.+++.
T Consensus 297 ~~~~L~~~l~~~----------~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl- 363 (778)
T 3opb_A 297 YLQLLERSLNVE----------DVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSL- 363 (778)
T ss_dssp HHHHHHHHTTSG----------GGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccH----------HHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-
Confidence 679999998652 778888888988875332221111 1245677778877776669999999999996
Q ss_pred ChhhHHHHHh-CCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh---------------------------------
Q 005088 238 NDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN--------------------------------- 282 (715)
Q Consensus 238 ~~~~~~~~~~-~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~--------------------------------- 282 (715)
++..+..+.+ .|+++.|+.+++. .+..+...++.+|.|++...+.
T Consensus 364 ~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~ 443 (778)
T 3opb_A 364 KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE 443 (778)
T ss_dssp SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH
T ss_pred CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH
Confidence 6777777766 4669999999995 6888999999999999863321
Q ss_pred -----HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHH---HHHHHH
Q 005088 283 -----IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSA 354 (715)
Q Consensus 283 -----~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~---v~~~a~ 354 (715)
.+..+.+.|+++.|+.++.+.++.++..++++|.|++ .++.++..+++.|+++.|+.++.+.... .+..|+
T Consensus 444 ~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 3456667899999999999999999999999999997 5689999999999999999999886544 899999
Q ss_pred HHHHHhHHHH-HHHHHh----cCChHHHHHhhcc-CCh-------------hHHHHHHHHHHhccCCCch-----hhHHH
Q 005088 355 FALGRLAQVI-TAGIAH----NGGLVPLLKLLDS-KNG-------------SLQHNAAFALYGLADNEDN-----VADFI 410 (715)
Q Consensus 355 ~~L~~l~~~~-~~~l~~----~~~l~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~~-----~~~l~ 410 (715)
.+|.+++... ...+.. .|++++|+.+|.. +.. .-+..|+.+|.||+..+++ +..++
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 9999999665 222221 3889999999972 221 1277999999999987633 34444
Q ss_pred hhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccc-hhhhcCC--
Q 005088 411 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGG-- 487 (715)
Q Consensus 411 ~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~~-- 487 (715)
.. .++++.|..+|.+.+..+|.+|+.+++||+.+++.. ..+...+
T Consensus 603 ~~--------------------------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 603 ST--------------------------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp HS--------------------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred Hh--------------------------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 42 236778889999999999999999999999888764 2333222
Q ss_pred ----cHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 488 ----GLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 488 ----~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.++.|+.++.+++.++|.+|+++|.+++...
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 4889999999999999999999999997644
No 37
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=7e-25 Score=194.51 Aligned_cols=131 Identities=36% Similarity=0.531 Sum_probs=99.9
Q ss_pred chHHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH
Q 005088 537 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 616 (715)
Q Consensus 537 ~~~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 616 (715)
....+++++.+||+++.++|+.|++||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|||+++++.+
T Consensus 15 ~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 94 (145)
T 4eoz_A 15 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 94 (145)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGG
T ss_pred HHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHH
Confidence 34678899999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHH
Q 005088 617 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH 667 (715)
Q Consensus 617 ~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~ 667 (715)
++.+++.+|++|+++.|+..|++++.+.++++||+.++.+|..|++++|++
T Consensus 95 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 95 MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 999999999999999999999999999999999999999999999998864
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=7.9e-22 Score=187.68 Aligned_cols=197 Identities=26% Similarity=0.362 Sum_probs=184.6
Q ss_pred hcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 005088 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 205 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
..++.+.|+.+++++++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|.++++.++..++++|++++..++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35788999999999999999999999999998889999999999999999999999999999999999999998888888
Q ss_pred HHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
..+.+.|+++.|+.+|.+.++.++..|+++|+|++..++.....+.+.|+++.|++++.++++.++..|+++|++++...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999888888888889999999999999999999999999999999874
Q ss_pred ---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 365 ---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 365 ---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
+..+.+.|+++.|++++.+.++.++..|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 7788899999999999999999999999999999975
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=8.6e-22 Score=187.43 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=186.6
Q ss_pred hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
..+..+.|+.+|.+.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45778999999988765 9999999999999988888999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHH
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (715)
+.+++..+..+.+.|+++.|+.++.++++.++..++++|+|++..+++....+.+.|+++.|+.++.+.+++++..++++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98888999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred HHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHH
Q 005088 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~ 362 (715)
|+|++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999998878888889999999999999999999999999999999864
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=7e-21 Score=187.67 Aligned_cols=210 Identities=22% Similarity=0.247 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhhccccc------hHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHh-hhcCCCCcccccCCCc
Q 005088 55 LLSEVSAQVNVLNTTFSW------LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKP 127 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~-lL~~~~~~~~~~~~~~ 127 (715)
....++..+..|.+.... .+.+.+.+..|+..|.+++.+.++...+.+.|++|.|+. +|+++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------- 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------- 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH---------
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH---------
Confidence 345566667777653111 023556789999999999999888888999999999999 9998777
Q ss_pred cchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc
Q 005088 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (715)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (715)
+++..|+|+|++++ +++.++..+++.|+++.|+.+|++..+. .+++.|+|+|++++.+++...+.+.+.
T Consensus 97 ---~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~ 166 (296)
T 1xqr_A 97 ---GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRL 166 (296)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHC
Confidence 99999999999999 8899999999999999999999864332 899999999999998888888888889
Q ss_pred CCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005088 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (715)
Q Consensus 207 g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (715)
|+++.|+.+|+++++.++..|+++|.+++.++++.+..+++.|+++.|+.+|.+++..++..++++|++|+...+..
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 99999999999999999999999999999888889999999999999999999999999999999999998775543
No 41
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=166.72 Aligned_cols=104 Identities=29% Similarity=0.551 Sum_probs=93.9
Q ss_pred HhcCCCcccEEEEecC----eeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH
Q 005088 541 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 616 (715)
Q Consensus 541 ~~~~~~~~d~~~~~~~----~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 616 (715)
+++++.+||+++.++| +.|++||.||+++|+||++||.++|+|+. ..|.++++++++|+.+++|+|||+++++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5788999999999998 89999999999999999999999999988 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhcC
Q 005088 617 IAQDLLRAADQYLLEGLKRLCEYTIAQDI 645 (715)
Q Consensus 617 ~~~~ll~~A~~~~~~~L~~~~~~~l~~~i 645 (715)
++.+++.+|++|+++.|+..|+++|.+.+
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998753
No 42
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.86 E-value=1.2e-21 Score=166.74 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=95.1
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 618 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 618 (715)
.++++++.+||+++.++|+.|++||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|||++.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 66788999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHH
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTI 641 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l 641 (715)
.+++.+|++|++++|+..|+++|
T Consensus 97 ~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 97 GDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999986
No 43
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.85 E-value=3.2e-21 Score=165.84 Aligned_cols=104 Identities=23% Similarity=0.424 Sum_probs=99.9
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+++.++.+|||++.++|+.|++||.||+++|+||++||.++|.| ....|.+ +++++++|+.+++|+|||++.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~ 99 (127)
T 1r29_A 21 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGN 99 (127)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHH
Confidence 567889999999999999999999999999999999999999998 6779999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHh
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIAQ 643 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~~ 643 (715)
+.+++.+|++|+++.|++.|+++|.+
T Consensus 100 ~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 100 IMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=2.2e-20 Score=184.14 Aligned_cols=223 Identities=17% Similarity=0.147 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH-hhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
+-+..|+..|.+++. +.++...+...|+++.|+. +|.++++.++..|+++|++++.+++..+..+++.|+++.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 677889999999986 5557777888999999999 99999999999999999999998899999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHH
Q 005088 259 RS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (715)
Q Consensus 259 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 337 (715)
.+ ++..++..|+|+|+|++.+++...+.+.+.|+++.|+.+|.+.+..++..|+|+|++++.++++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 96 48899999999999999988888888899999999999999999999999999999999888889999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhHHHHH---HHHHhc-CChHHH----HHhhccC--ChhHHHHHHHHHHhccCCC
Q 005088 338 LIEMLQSPDVQLREMSAFALGRLAQVIT---AGIAHN-GGLVPL----LKLLDSK--NGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 338 L~~~L~~~~~~v~~~a~~~L~~l~~~~~---~~l~~~-~~l~~L----~~ll~~~--~~~v~~~a~~~L~~l~~~~ 403 (715)
|+.+|.++++.+++.++.+|++|+.... ...... ..+..+ ++.++.. +.++...+..++.++...+
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998751 111111 112111 2223322 4577777888888776443
No 45
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=168.46 Aligned_cols=109 Identities=25% Similarity=0.386 Sum_probs=102.5
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+++.++.+|||++.++|+.|++||.||+++|+||++||.+++.|. ..+.++ ++++++|+.+|+|+|||++.++.++
T Consensus 28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence 6678899999999999999999999999999999999999998764 478885 8999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhcCChhh
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 649 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~ 649 (715)
+.+++.+|++|+++.|++.|+++|...++.+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999988776
No 46
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.83 E-value=4.4e-21 Score=167.96 Aligned_cols=103 Identities=24% Similarity=0.411 Sum_probs=93.6
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCCcccCHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 616 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 616 (715)
.+++.++.+|||+|.++|+.|++||.||+++|+||++||.++|.+ +....|.++++++++|+.+|+|+|||++.++.+
T Consensus 39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence 567889999999999999999999999999999999999998876 567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHH
Q 005088 617 IAQDLLRAADQYLLEGLKRLCEYTI 641 (715)
Q Consensus 617 ~~~~ll~~A~~~~~~~L~~~~~~~l 641 (715)
++.+++.+|++|++++|++.|+++|
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 9999999999999999999999875
No 47
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.83 E-value=4.5e-21 Score=162.40 Aligned_cols=101 Identities=25% Similarity=0.381 Sum_probs=94.4
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 618 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 618 (715)
.+++.++.+||+++.++|+.|++||.||+++|+||++||.+++ ...|.++++++++|+.+++|+|||+++++.+++
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 5678899999999999999999999999999999999999876 458999999999999999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHh
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTIAQ 643 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l~~ 643 (715)
.+++.+|++|++++|++.|++++.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 48
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.83 E-value=1.7e-20 Score=159.42 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=95.8
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 618 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 618 (715)
.+++.++.+|||++.++|+.|++||.||+++|+||++||.++ ...+.++++++++|+.+++|+|||+++++.+++
T Consensus 20 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~ 94 (121)
T 1buo_A 20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDL 94 (121)
T ss_dssp HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHH
Confidence 667889999999999999999999999999999999999874 457999999999999999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhcC
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTIAQDI 645 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l~~~i 645 (715)
.+++.+|++|++++|++.|+++|.+.|
T Consensus 95 ~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 95 DDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999997643
No 49
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.83 E-value=6.2e-21 Score=165.30 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=92.9
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 618 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 618 (715)
.++++++.+|||++.++|+.|++||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v 92 (135)
T 2yy9_A 17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 92 (135)
T ss_dssp HHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHH
Confidence 6678999999999999999999999999999999999999877 457999999999999999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhcCCh
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTIAQDISL 647 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l~~~i~~ 647 (715)
.+++.+|++|+++.|++.|+++|.+.+..
T Consensus 93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 93 DQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 99999999999999999999998877643
No 50
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=157.91 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=93.5
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecC--CCCHHHHHHHHHHHhcCCcccCHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTLD 616 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~~~~~ 616 (715)
..++.++.+|||++.++|+.|++||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||+++++.+
T Consensus 14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence 567889999999999999999999999999999999999986 24567777 999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHH
Q 005088 617 IAQDLLRAADQYLLEGLKRLCEYTIA 642 (715)
Q Consensus 617 ~~~~ll~~A~~~~~~~L~~~~~~~l~ 642 (715)
++.+++.+|++|+++.|++.|+++|.
T Consensus 90 ~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999874
No 51
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=171.06 Aligned_cols=196 Identities=16% Similarity=0.236 Sum_probs=165.3
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
+|.+++.|.+. +.+..++..|++.|.+++. +++++..+++.|+||.|+++|++++. +++..|+
T Consensus 10 i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~------------~vq~~Aa 73 (233)
T 3tt9_A 10 LERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE------------DVQRAVC 73 (233)
T ss_dssp HHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH------------HHHHHHH
T ss_pred HHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 67777777654 2223678899999999996 78899999999999999999998777 9999999
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 216 (715)
|+|.||+ ++++++..+.+.|++|.|+++|.+..+ .++++.++.+|++|+. .+.++..+.. ++++.|+.++
T Consensus 74 ~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~-------~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll 144 (233)
T 3tt9_A 74 GALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRD-------LETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENI 144 (233)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCC-------HHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHH
Confidence 9999999 789999999999999999999985432 2899999999999986 5667777775 5799998866
Q ss_pred c----------------cCCHHHHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHhhcC------CCHHHHHHHHHHH
Q 005088 217 E----------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGVI 273 (715)
Q Consensus 217 ~----------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~v~~~a~~~L 273 (715)
. ..++.++.+|..+|+||+..+++.|..+.+. |+++.|+.+++. .+...++.|+.+|
T Consensus 145 ~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L 224 (233)
T 3tt9_A 145 IIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224 (233)
T ss_dssp CHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence 3 1367999999999999998778999999886 567999999875 2567899999999
Q ss_pred HHhhcC
Q 005088 274 GNLVHS 279 (715)
Q Consensus 274 ~~L~~~ 279 (715)
.||+..
T Consensus 225 ~nLs~~ 230 (233)
T 3tt9_A 225 HNLSYQ 230 (233)
T ss_dssp HHHCCC
T ss_pred HHHHhh
Confidence 999754
No 52
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=169.46 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=168.8
Q ss_pred CcHHHHHhhccCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 208 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 208 ~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
.++.++.+|.++++ .++..|+++|.+++..++.++..+.+.|++|.|+.+|.+++++++..|+++|.||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999887 8999999999999988899999999999999999999999999999999999999988889999
Q ss_pred HHHHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC----------------CCCHH
Q 005088 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDVQ 348 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~----------------~~~~~ 348 (715)
.+.+.|+++.|+++|. +.+.++++.++.+|+|++. .+.++..+.+. +++.|++++. ..++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 5789999999999999975 45666777764 6888887652 13679
Q ss_pred HHHHHHHHHHHhHHHH---HHHHHhc-CChHHHHHhhcc------CChhHHHHHHHHHHhccCC
Q 005088 349 LREMSAFALGRLAQVI---TAGIAHN-GGLVPLLKLLDS------KNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 349 v~~~a~~~L~~l~~~~---~~~l~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 402 (715)
++++|.++|.||+..+ |+.+.+. |+++.|+.+++. .+...+++|+.+|+||+-.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999998743 8888876 567999999954 2567899999999999743
No 53
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.81 E-value=4.2e-20 Score=156.37 Aligned_cols=99 Identities=22% Similarity=0.359 Sum_probs=92.8
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 618 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 618 (715)
.+++.++.+|||++.++|+.|++||.||+++|+||++||.++ ...+.++++++++|+.+++|+|||++.++.+++
T Consensus 19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 567889999999999999999999999999999999999863 347888999999999999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHH
Q 005088 619 QDLLRAADQYLLEGLKRLCEYTIA 642 (715)
Q Consensus 619 ~~ll~~A~~~~~~~L~~~~~~~l~ 642 (715)
.+++.+|++|++++|++.|++++.
T Consensus 94 ~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999874
No 54
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.80 E-value=1e-20 Score=162.21 Aligned_cols=100 Identities=24% Similarity=0.401 Sum_probs=94.3
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCC-CCHHHHHHHHHHHhcCCcccCHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+++.++.+|||++.++|+.|++||.||+++|+||++||.+++.| ...|.+++ +++++|+.+++|+|||++.++.++
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~ 101 (125)
T 3ohu_A 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN 101 (125)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence 567889999999999999999999999999999999999999887 56899998 999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHH
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYT 640 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~ 640 (715)
+.+++.+|++|+++.|++.|+++
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHh
Confidence 99999999999999999988764
No 55
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=160.45 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=92.5
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+++.++.+|||++.++|+.|++||.||+++|+||++||.++++|. ..+.+ +++++++|+.+|+|+|||+++++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence 6678899999999999999999999999999999999999998764 47888 48999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHH
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIA 642 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~ 642 (715)
+.+++.+|++|+++.|++.|+++|.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999988753
No 56
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.79 E-value=4.2e-20 Score=159.04 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=89.2
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCCcccCHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 617 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 617 (715)
.+++.++.+||+++.++|+.|++||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||++.++.++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence 567789999999999999999999999999999999999876 45689996 8999999999999999999999999
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhc
Q 005088 618 AQDLLRAADQYLLEGLKRLCEYTIAQD 644 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~~~~~~l~~~ 644 (715)
+.+++.+|++|+++.|++.|+++|.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998763
No 57
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.76 E-value=1.5e-18 Score=145.65 Aligned_cols=92 Identities=27% Similarity=0.471 Sum_probs=86.5
Q ss_pred HHHhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCc-ccCHHH
Q 005088 539 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLDI 617 (715)
Q Consensus 539 ~~~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-~~~~~~ 617 (715)
.+++.++.+||+++.++|+.|++||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||++ .++.++
T Consensus 23 ~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 567889999999999999999999999999999999999875 45899999999999999999999999 799999
Q ss_pred HHHHHHHHHHhChhhHHH
Q 005088 618 AQDLLRAADQYLLEGLKR 635 (715)
Q Consensus 618 ~~~ll~~A~~~~~~~L~~ 635 (715)
+.+++.+|++|++++|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999874
No 58
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.76 E-value=4.5e-19 Score=148.99 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=86.1
Q ss_pred HhcCCCcccEEEEecCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHHHHHH
Q 005088 541 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD 620 (715)
Q Consensus 541 ~~~~~~~~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ 620 (715)
.+.++.+|||++.++|+.|++||.||+++|+||++ ....|.++++++++|+.+++|+|||++.++.+++.+
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 35788999999999999999999999999999984 235789999999999999999999999999999999
Q ss_pred HHHHHHHhChhhHHHHHHHHHHh
Q 005088 621 LLRAADQYLLEGLKRLCEYTIAQ 643 (715)
Q Consensus 621 ll~~A~~~~~~~L~~~~~~~l~~ 643 (715)
++.+|++|+++.|++.|++.+..
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999998654
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=1.5e-16 Score=176.73 Aligned_cols=415 Identities=14% Similarity=0.083 Sum_probs=286.3
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHH
Q 005088 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (715)
Q Consensus 61 ~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L 140 (715)
.+++.+...+.. .++.++..++.+|..++..-... ......+|.+..++++.+. .+|..|+.+|
T Consensus 164 ~l~~~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~------------~vr~~a~~~l 227 (588)
T 1b3u_A 164 ELRQYFRNLCSD--DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD------------SVRLLAVEAC 227 (588)
T ss_dssp HHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH------------HHHTTHHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH------------HHHHHHHHHH
Confidence 344444443332 36778899999999888742111 1234578888898887766 9999999999
Q ss_pred Hhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC
Q 005088 141 GLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (715)
Q Consensus 141 ~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 219 (715)
+.++ ..+.. ......+|.+..++.+.+ +.++..++.+|+.++..... .......++.+..+++++
T Consensus 228 ~~l~~~~~~~---~~~~~~~~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~ 293 (588)
T 1b3u_A 228 VNIAQLLPQE---DLEALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC 293 (588)
T ss_dssp HHHHHHSCHH---HHHHHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS
T ss_pred HHHHHhCCHH---HHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC
Confidence 9998 32211 122346777888876543 38999999999999853211 112345688999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh
Q 005088 220 DTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ 298 (715)
++.++..++.+|..++...+.. +....-..+++.+..++.++++.+|..++++|+.++..-.. ......+++.+..
T Consensus 294 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~ 370 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLA 370 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHH
Confidence 9999999999999998643221 11122235678888999999999999999999998643211 1123447889999
Q ss_pred hhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHH
Q 005088 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLL 378 (715)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~ 378 (715)
++.+.+++++..++.++..++...... .....++|.+..++.+.++.+|..++.+|..++............++.+.
T Consensus 371 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 447 (588)
T 1b3u_A 371 QLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447 (588)
T ss_dssp HHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 999989999999999998887532211 12235678889999999999999999999999876522233345678888
Q ss_pred HhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhh-hhhhhhHHHHHHHHHHH-----HHhhhhHHHHH
Q 005088 379 KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLEE-----KIHGRVLNHLL 452 (715)
Q Consensus 379 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~l~~L~ 452 (715)
.++.++++.||..|+.+++.++..-.. .+.....++.|...... ....+.+....+..+.. .+...+++.|+
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 525 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL 525 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999754221 11222334444322111 01112222223322222 12356888899
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhh
Q 005088 453 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 515 (715)
Q Consensus 453 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~ 515 (715)
.++.++++++|..++.+|+.++..-... +.....+|.|..++.+.++++|..|+.++..+.
T Consensus 526 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 526 RMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999999999999999999997543221 123456788888889999999999999998765
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=4.7e-15 Score=155.77 Aligned_cols=334 Identities=13% Similarity=0.144 Sum_probs=255.8
Q ss_pred HHhHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchH
Q 005088 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (715)
Q Consensus 52 ~~~~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (715)
.+.....|+.+.+.+....- .+-+..|+..|..++++ ++. .+..++++.|+..|+.... |.+
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl-----~eDRR~Av~~Lk~~sk~--y~~-~Vg~~~l~~li~~L~~d~~----------D~e 77 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTL-----LDDRRNAVRALKSLSKK--YRL-EVGIQAMEHLIHVLQTDRS----------DSE 77 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHTTTT--TTT-HHHHHTHHHHHHHHHSCTT----------CHH
T ss_pred CCChhhHHHHHHHHHhhccc-----hhHHHHHHHHHHHHHHH--hHH-HhhhhhHHHHHHHHhcccc----------cHH
Confidence 34466778899999987633 33478999999999874 222 3446789999999988765 448
Q ss_pred HHhhHHHHHHhhc-CChh-----------------hHHHH-HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHH
Q 005088 132 VEKGSAFALGLLA-VKPE-----------------HQQLI-VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (715)
Q Consensus 132 v~~~a~~~L~~l~-~~~~-----------------~~~~i-~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (715)
+...++.+|.++. .+++ +.+.+ .+.+.++.|+.+|+..+. .++.+++.+|..+
T Consensus 78 ~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L 149 (651)
T 3grl_A 78 IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSL 149 (651)
T ss_dssp HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHH
Confidence 8889999998866 3221 12222 345789999999987665 8999999999999
Q ss_pred hccCcc-chhHHH-hcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCC----HHHH
Q 005088 193 AHENSS-IKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIH 266 (715)
Q Consensus 193 ~~~~~~-~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~----~~v~ 266 (715)
+...+. .++.+. ..++++.|+.+|.++.+.+|..++..|.+|+.++++.++.+.-.|+++.|+.++..+. ..+.
T Consensus 150 ~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv 229 (651)
T 3grl_A 150 LKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVV 229 (651)
T ss_dssp HHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHH
T ss_pred HhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhH
Confidence 987777 777777 4599999999999999999999999999999999999999999999999999998754 3788
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChH------HHHH---HHHHHHHHhcCC------cchhHHHhh
Q 005088 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE------SQRE---AALLLGQFAATD------SDCKVHIVQ 331 (715)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~------~~~~---a~~~L~~l~~~~------~~~~~~~~~ 331 (715)
..|+.+|.||...|+.++..+.+.|+++.|..++...... ...+ +..++.-++..+ ..++..+.+
T Consensus 230 ~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 230 EDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999754321 2222 445566665542 346778889
Q ss_pred cCChHHHHHHhCCC--CHHHHHHHHHHHHHhHHHH---HHHHHhcC---------ChHHHHHhhcc-CChhHHHHHHHHH
Q 005088 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVI---TAGIAHNG---------GLVPLLKLLDS-KNGSLQHNAAFAL 396 (715)
Q Consensus 332 ~~~l~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~---~~~l~~~~---------~l~~L~~ll~~-~~~~v~~~a~~~L 396 (715)
.|+++.|++++..+ ...++..|+.+++.+...+ +..+.+.. .+..|+.++++ ....+|..|+.++
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999998764 6789999999999998877 55555432 23334444544 4578899999999
Q ss_pred HhccCC-CchhhHHHh
Q 005088 397 YGLADN-EDNVADFIR 411 (715)
Q Consensus 397 ~~l~~~-~~~~~~l~~ 411 (715)
..+..+ ++.+..+..
T Consensus 390 ~ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 390 QCFLYKNQKGQGEIVS 405 (651)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 988654 444444443
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=4.3e-15 Score=165.00 Aligned_cols=370 Identities=15% Similarity=0.092 Sum_probs=266.4
Q ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHH
Q 005088 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (715)
++.++..|+.+|.+++.. +.. ......+|.+..+.++++. .+|..++.+++.++ ..+..
T Consensus 100 ~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~------------~~R~~a~~~l~~~~~~~~~~---- 160 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWF------------TSRTSACGLFSVCYPRVSSA---- 160 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSH------------HHHHHHGGGHHHHTTTSCHH----
T ss_pred hHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHHHHHhcCHH----
Confidence 566788888888888874 221 1222346666666665544 88888888888888 22221
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (715)
.....++.+..++.+.++ .++..++.+|..++...+.. ......++.+..++.++++.++..|+.+|..
T Consensus 161 ~~~~l~~~l~~l~~d~~~--------~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~ 229 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTP--------MVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVN 229 (588)
T ss_dssp HHHHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 122356777777776554 99999999999998643321 2234677889999999999999999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHH
Q 005088 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (715)
Q Consensus 234 L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~ 313 (715)
++...+.. .....+++.+..++.+++..+|..++.+|+.++...+. ......+++.+..++.+.++.++..++.
T Consensus 230 l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 303 (588)
T 1b3u_A 230 IAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASH 303 (588)
T ss_dssp HHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHH
Confidence 98633221 12234788888999999999999999999999653211 1233457899999999999999999999
Q ss_pred HHHHHhcCCcch-hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHH
Q 005088 314 LLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNA 392 (715)
Q Consensus 314 ~L~~l~~~~~~~-~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 392 (715)
+++.++...+.. ........++|.+..++.+.++.+|..++++|..++............++.+..++++.++.||..+
T Consensus 304 ~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 999998643322 1112234677889999999999999999999999987652222234578889999999999999999
Q ss_pred HHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHh
Q 005088 393 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 472 (715)
Q Consensus 393 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 472 (715)
+.++..+...-... .....+++.+..++.+.+..+|..++.+|..
T Consensus 384 ~~~l~~l~~~~~~~-----------------------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR-----------------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HTTCHHHHHHSCHH-----------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHH-----------------------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 98888775321100 0112366777888888888999999999998
Q ss_pred hcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 473 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 473 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
++...... +.....++.+..++.+++..+|..|+.++..+....
T Consensus 429 l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 429 LAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 86432211 122346788888899888999999999999888753
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=4.6e-14 Score=148.27 Aligned_cols=411 Identities=17% Similarity=0.138 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc-Chh-----------------hHHHH-HhcCChHHHHhhhcC
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEE-----------------VVNWI-VEGGAVPALVKHLQA 115 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~-----------------~~~~~-~~~g~v~~L~~lL~~ 115 (715)
....++.++..|... ..|.+....++.+|.++.. +++ ..+.+ .+.+.++.|+.+|+.
T Consensus 58 g~~~l~~li~~L~~d----~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~ 133 (651)
T 3grl_A 58 GIQAMEHLIHVLQTD----RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE 133 (651)
T ss_dssp HHHTHHHHHHHHHSC----TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHhcc----cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC
Confidence 344577777777765 3577788889999988766 321 22333 357899999999998
Q ss_pred CCCcccccCCCccchHHHhhHHHHHHhhc-CChh-hHHHHHhc-CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHH
Q 005088 116 PPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQLIVDN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~~i~~~-~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (715)
.+. .+|..++.+|..|+ ..++ .++.+... ++++.|+.+|++..+ .++..++..|.++
T Consensus 134 ~df------------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--------~iRneallLL~~L 193 (651)
T 3grl_A 134 FDF------------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--------VIRNDGVLLLQAL 193 (651)
T ss_dssp CCH------------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--------HHHHHHHHHHHHH
T ss_pred ccH------------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--------HHHHHHHHHHHHH
Confidence 777 99999999999999 6666 88888855 999999999998764 8889999999999
Q ss_pred hccCccchhHHHhcCCcHHHHHhhccCC----HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHH----
Q 005088 193 AHENSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA---- 264 (715)
Q Consensus 193 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~---- 264 (715)
+.++++.++.+.-.|+++.|+.++.... ..+...|+.+|.+|...|+.++..+.+.|+++.|..++..+++.
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 9999999999998999999999998644 37889999999999999999999999999999999999754321
Q ss_pred --HHHH---HHHHHHHhhcC------ChhHHHHHHHcCChHHHHhhhccC--ChHHHHHHHHHHHHHhcCCcchhHHHhh
Q 005088 265 --IHYE---AVGVIGNLVHS------SPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ 331 (715)
Q Consensus 265 --v~~~---a~~~L~~L~~~------~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 331 (715)
...+ ++.++.-+... +..++..+.+.|++..+++++... ...++..|+.+++.+..+++.++..+.+
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 2222 55566666543 234667888999999999998765 5788999999999999999888887765
Q ss_pred cC---------ChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---HHHHHhc----------CCh---HHHHHhhccCC
Q 005088 332 RG---------AVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---TAGIAHN----------GGL---VPLLKLLDSKN 385 (715)
Q Consensus 332 ~~---------~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---~~~l~~~----------~~l---~~L~~ll~~~~ 385 (715)
.. ++..|+.++.+ ....+|-+|+.++.....++ +..+... +.+ ..+..-+-+.+
T Consensus 354 ~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d 433 (651)
T 3grl_A 354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTD 433 (651)
T ss_dssp CEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSC
T ss_pred ccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCc
Confidence 32 23334444555 56889999999999888766 3344322 111 12334444455
Q ss_pred hhHHHHHHHHHHhccCCCchhh-HHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhhhHH
Q 005088 386 GSLQHNAAFALYGLADNEDNVA-DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQ 463 (715)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~ 463 (715)
+--...|+.++..+..+.+..+ .+.+-- +.. +.. ...-. .++.+..+|.. .++.++
T Consensus 434 ~~~~wfAavil~hll~~n~~~K~~~l~v~-l~~--~~g---e~~vt----------------liq~~~~~L~~~~~~ri~ 491 (651)
T 3grl_A 434 SLSNWCAAVALAHALQENATQKEQLLRVQ-LAT--SIG---NPPVS----------------LLQQCTNILSQGSKIQTR 491 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCB-CCC--CTT---CCCCB----------------HHHHHHHHTTTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHhCc-ccc--cCC---CCccc----------------HHHHHHHHHhcCCchhHH
Confidence 5444557777777765544443 333210 000 000 00000 12222333322 344555
Q ss_pred HHHHHHHH-hhcCCCccchhhhcCC-cHHHHHHHhcCCC----cchhhhhHHHH
Q 005088 464 RRVALALA-HLCSPDDQRTIFIDGG-GLELLLGLLGSTN----PKQQLDGAVAL 511 (715)
Q Consensus 464 ~~a~~aL~-~l~~~~~~~~~~~~~~-~i~~L~~ll~~~~----~~~~~~aa~~L 511 (715)
..-+..|+ +|..++..-..|...+ .++.|++.+.++. .-++--++..|
T Consensus 492 vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LL 545 (651)
T 3grl_A 492 VGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLL 545 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 54444444 4466667666666665 6899998775422 23555554444
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=1.8e-15 Score=175.37 Aligned_cols=414 Identities=15% Similarity=0.129 Sum_probs=263.2
Q ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHH----hcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhh
Q 005088 76 DRAAAKRATHVLAELAKN-EEVVNWIV----EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH 149 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~----~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~ 149 (715)
++..+..++.+|..++.+ +.....-. -.+.++.+++++++++. .+|..|+++|.++. ..+..
T Consensus 141 ~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~------------~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP------------KIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH------------HHHHHHHHHHHTTTTTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHhcccHH
Confidence 556788889999888874 22211000 12357778888876655 99999999999988 33221
Q ss_pred HHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHH
Q 005088 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (715)
Q Consensus 150 ~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 229 (715)
... .-.+.++.+..++.+.+. +++..++++|..++...+..-.... .+.++.++.++.+.++.++..|+.
T Consensus 209 ~~~-~~~~~l~~l~~~~~d~~~--------~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e 278 (852)
T 4fdd_A 209 LML-HIDSFIENLFALAGDEEP--------EVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACE 278 (852)
T ss_dssp HHT-SHHHHHHHHHHHHTCCCH--------HHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHH
Confidence 100 011356777777766543 8999999999999975554322111 246777888888889999999999
Q ss_pred HHHHHhcCChhhHHHHHh--CCChHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 230 ALRTLAFKNDENKNQIVE--CNALPTLILML-----------RS-----------EDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll-----------~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
++..++.. ...+..+.. ..+++.++..+ .+ .+..++..+..+|..++...++.
T Consensus 279 ~l~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-- 355 (852)
T 4fdd_A 279 FWLTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-- 355 (852)
T ss_dssp HHHHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH--
Confidence 99999853 222222211 13456666665 22 12246888999999987543321
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~ 365 (715)
+. ..+++.+...+.+.++.+|..|++++++++.+....... .-.++++.++..+.++++.||..++++|++++....
T Consensus 356 -~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 356 -LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp -GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred -HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 11 235778888888889999999999999998765543222 225678999999999999999999999999997651
Q ss_pred H---HHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCch-hhHHHhhccccccccchhhhh---------------
Q 005088 366 A---GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQ--------------- 426 (715)
Q Consensus 366 ~---~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~i~~L~~~~~~~~--------------- 426 (715)
. ...-.+.++.++..+.++++.++..|+++|.+++..... ..... .+.++.|........
T Consensus 433 ~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 433 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 1 112235677888888889999999999999999743111 10000 111111111110000
Q ss_pred -----------------------------hhhh--HHHHHHHHHHHHH-------hhhhHHHHHHHHhhh----------
Q 005088 427 -----------------------------ATKD--CVAKTLKRLEEKI-------HGRVLNHLLYLMRVA---------- 458 (715)
Q Consensus 427 -----------------------------~~~~--~~~~~~~~~~~~~-------~~~~l~~L~~ll~~~---------- 458 (715)
.... .+...+..+.... ...+++.++.++...
T Consensus 512 ~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~ 591 (852)
T 4fdd_A 512 DSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 591 (852)
T ss_dssp HHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 0000 0001111111111 122334444444431
Q ss_pred -------hhhHHHHHHHHHHhhcCCCc--cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 459 -------EKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 459 -------~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
+.+++..++.+++.++..-. ....+...+.++.+...+.++++.+|..+..++..++...
T Consensus 592 ~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 592 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp TTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh
Confidence 45678888888888865432 3333335688999999999999999999999999998653
No 64
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.65 E-value=1.8e-15 Score=175.32 Aligned_cols=379 Identities=14% Similarity=0.098 Sum_probs=265.8
Q ss_pred HhHHHHHHHHHHHHHHhcC------hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CCh
Q 005088 75 ADRAAAKRATHVLAELAKN------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (715)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~------~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~ 147 (715)
.++.++..|+-.|.|.... ++.+. .+-+.+++.|.+.+. .+|..++.+++.++ .+.
T Consensus 60 ~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~-----~ik~~ll~~l~~~~~------------~vr~~~a~~i~~ia~~~~ 122 (852)
T 4fdd_A 60 EDEPTRSLSGLILKNNVKAHFQNFPNGVTD-----FIKSECLNNIGDSSP------------LIRATVGILITTIASKGE 122 (852)
T ss_dssp SCHHHHHHHHHHHHHHTTTSGGGCCHHHHH-----HHHHHHHTTTTCSSH------------HHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHccCCCCHHHHH-----HHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcC
Confidence 3667888899999988752 22222 234567777776555 89999999999998 322
Q ss_pred hhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHH----hcCCcHHHHHhhccCCHHH
Q 005088 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKV 223 (715)
Q Consensus 148 ~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~v 223 (715)
.. .-.+.++.|+..+.+.+. .+++.++.+|..++...+.....-. ....++.++.+++++++.+
T Consensus 123 ~~----~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 190 (852)
T 4fdd_A 123 LQ----NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190 (852)
T ss_dssp TT----TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHH
T ss_pred cc----ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHH
Confidence 11 123568888888877654 8899999999999964443211000 1235677788888899999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC
Q 005088 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (715)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 303 (715)
+..|+++|..+....+...... -.++++.+..++.+++++++..++++|..++...+....... .++++.++..+.+.
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ 268 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC
Confidence 9999999998885432211100 124678888889999999999999999999876654322222 24778888888888
Q ss_pred ChHHHHHHHHHHHHHhcCCcchhHHHh--hcCChHHHHHHh-----------CC-----------CCHHHHHHHHHHHHH
Q 005088 304 CSESQREAALLLGQFAATDSDCKVHIV--QRGAVRPLIEML-----------QS-----------PDVQLREMSAFALGR 359 (715)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~~L-----------~~-----------~~~~v~~~a~~~L~~ 359 (715)
++.++..|+..+..++... ..+..+. -..+++.++..+ .+ .++.+|..|..+|..
T Consensus 269 ~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 8999999999999987532 2222111 124556666666 23 234579999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHH
Q 005088 360 LAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 439 (715)
Q Consensus 360 l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~ 439 (715)
++......+. ..+++.+..++.+.++.+|..|+++|++++..... . .. .
T Consensus 348 la~~~~~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~-~~-~-------------------------- 396 (852)
T 4fdd_A 348 LANVYRDELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--G-MI-P-------------------------- 396 (852)
T ss_dssp HHHHHGGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--H-HG-G--------------------------
T ss_pred HHHhccHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--H-HH-H--------------------------
Confidence 9876632222 24567777888889999999999999999865421 1 11 0
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc-cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 440 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 440 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.-..+++.++..+.++++.||..|+.+|++++.... ........+.++.|...+.++++.+|..|+++|.+++...
T Consensus 397 ---~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 397 ---YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp ---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 113367889999999999999999999999975421 1111122367888899998899999999999999999764
Q ss_pred c
Q 005088 519 T 519 (715)
Q Consensus 519 ~ 519 (715)
.
T Consensus 474 ~ 474 (852)
T 4fdd_A 474 C 474 (852)
T ss_dssp G
T ss_pred h
Confidence 3
No 65
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=3.7e-13 Score=133.76 Aligned_cols=257 Identities=16% Similarity=0.130 Sum_probs=196.7
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (715)
...+.++.|+..|.+.+. .++..|+++|.++.. .+.++.|+.++.++++.++..|+++|..
T Consensus 20 ~~~~~i~~L~~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNS--------LKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHTSCHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHcCCH--------HHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345679999999987654 899999999999852 2457889999999999999999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHH
Q 005088 234 LAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (715)
Q Consensus 234 L~~~~~~~~~~~~~~g~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~ 312 (715)
+... +.... .+++.|. .++.++++.++..++++|+++...++.... ..++.|...+.+.++.++..++
T Consensus 81 l~~~-~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 81 IKIC-KKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp SCCC-TTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHH
T ss_pred hccc-cccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHH
Confidence 8742 22111 1233444 245778999999999999999654332222 3578899999999999999999
Q ss_pred HHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHH
Q 005088 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNA 392 (715)
Q Consensus 313 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 392 (715)
.+|+++.. .+.++.|+.++.++++.+|..|+++|+.+... ....++.|+.+++++++.++..|
T Consensus 150 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A 212 (280)
T 1oyz_A 150 FAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEA 212 (280)
T ss_dssp HHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998742 24789999999999999999999999887421 12356788999999999999999
Q ss_pred HHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHh
Q 005088 393 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 472 (715)
Q Consensus 393 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 472 (715)
+++|+++... ..++.|+..+.+++ ++..|+.+|+.
T Consensus 213 ~~aL~~~~~~-------------------------------------------~~~~~L~~~l~d~~--vr~~a~~aL~~ 247 (280)
T 1oyz_A 213 IIGLSYRKDK-------------------------------------------RVLSVLCDELKKNT--VYDDIIEAAGE 247 (280)
T ss_dssp HHHHHHTTCG-------------------------------------------GGHHHHHHHHTSSS--CCHHHHHHHHH
T ss_pred HHHHHHhCCH-------------------------------------------hhHHHHHHHhcCcc--HHHHHHHHHHh
Confidence 9999998511 14566777777644 89999999999
Q ss_pred hcCCCccchhhhcCCcHHHHHHHhcC-CCcchhhhhHHHHH
Q 005088 473 LCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF 512 (715)
Q Consensus 473 l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~aa~~L~ 512 (715)
+.. ...++.|.+++.+ +++++...+..+|.
T Consensus 248 i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 248 LGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred cCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 853 2678899998865 66777777766653
No 66
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=3e-13 Score=148.94 Aligned_cols=356 Identities=16% Similarity=0.122 Sum_probs=250.9
Q ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH
Q 005088 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (715)
+...+..+.-.+..++. +++... -+++.+.+-|+++++ .+|..|+++|+++. .++....
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~~-- 121 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITEY-- 121 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHHH--
T ss_pred CHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHHH--
Confidence 56666666667777766 454432 246778888888776 89999999999986 4443333
Q ss_pred hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
.++.+..++.+.++ .++..|+.++.+++..+++.. .+.+.++.+..++.++++.++..|+.+|..+
T Consensus 122 ---l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 122 ---LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp ---HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 35778888887655 999999999999997665532 2346789999999999999999999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHH
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (715)
+..++.........+.+..|+..+.+.++-.+...+.++..++..++... ..+++.+..++++.++.++.+|+++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHH
Confidence 97654321000001235667777777888889999999998875544332 2357788888999999999999999
Q ss_pred HHHHhcC---CcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHH
Q 005088 315 LGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHN 391 (715)
Q Consensus 315 L~~l~~~---~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 391 (715)
+..+... +++....+. .++.+.|+.++. +++.+|..|+.+|..++......+. . .+..+... .+.+..++..
T Consensus 263 i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-~-~~~~~~~~-~~d~~~Ir~~ 337 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-Q-EIKVFFVK-YNDPIYVKLE 337 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-T-CTTTTSCC-TTSCHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-H-HHHhheec-cCChHHHHHH
Confidence 9998632 233322222 355677776654 7899999999999999876511111 1 11122222 2344889999
Q ss_pred HHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 005088 392 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 471 (715)
Q Consensus 392 a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~ 471 (715)
++.+|.+++... +... +++.|..++.+.+.+++..++.+|+
T Consensus 338 al~~L~~l~~~~-nv~~--------------------------------------iv~~L~~~l~~~d~~~r~~~v~aI~ 378 (591)
T 2vgl_B 338 KLDIMIRLASQA-NIAQ--------------------------------------VLAELKEYATEVDVDFVRKAVRAIG 378 (591)
T ss_dssp HHHHHHHTCCSS-THHH--------------------------------------HHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCChh-hHHH--------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999987443 3222 4455667777788889999999999
Q ss_pred hhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 472 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 472 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.++..... .....++.|.+++.+.+..++..+..++.++....
T Consensus 379 ~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 379 RCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence 98765421 12346788888888888888888888888887653
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.55 E-value=8.6e-13 Score=141.63 Aligned_cols=389 Identities=13% Similarity=0.050 Sum_probs=253.6
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 62 lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
+...|...++. |...+..|-..|.++..+. ..+.+..|+.++.+.+. +..+|..|+..|.
T Consensus 3 l~~~L~~~~s~---d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~----------~~~vR~~a~~~Lk 62 (462)
T 1ibr_B 3 LITILEKTVSP---DRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN----------SQVARVAAGLQIK 62 (462)
T ss_dssp HHHHHHHTTCS---CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS----------CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHH
Confidence 34445554432 5567888888888765420 11245677788876533 2389999999999
Q ss_pred hhc-CChhhHHH-----------HHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCc
Q 005088 142 LLA-VKPEHQQL-----------IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (715)
Q Consensus 142 ~l~-~~~~~~~~-----------i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i 209 (715)
++. ........ -....+-..++..|.+.+. .+ ..++.++..++....... .-.+.+
T Consensus 63 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~---~w~~ll 130 (462)
T 1ibr_B 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVN---QWPELI 130 (462)
T ss_dssp HHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGT---CCTTHH
T ss_pred HhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhcccc---ccHHHH
Confidence 987 22110000 0011223456667766544 45 678888888875321110 114577
Q ss_pred HHHHHhhccC--CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHH
Q 005088 210 PPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIK 284 (715)
Q Consensus 210 ~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~ 284 (715)
+.|+..+.++ ++.++..++.+|..++... +..-.... ..+++.+...+.++ ++.+|..++++++++...-....
T Consensus 131 ~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (462)
T 1ibr_B 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (462)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889999888 8999999999999999632 21101111 23677888889887 78999999999999753322111
Q ss_pred H-HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHH
Q 005088 285 K-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 285 ~-~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~ 363 (715)
. .....-+++.+...+.+.+++++..++.++..++...+.........++++.++..+++.++.++..++..+..++..
T Consensus 210 ~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 0 111111466667777788899999999999999865544322222226778888888889999999999999998865
Q ss_pred H--HHH------------------HHh---cCChHHHHHhhcc-------CChhHHHHHHHHHHhccCCCchhhHHHhhc
Q 005088 364 I--TAG------------------IAH---NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVG 413 (715)
Q Consensus 364 ~--~~~------------------l~~---~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 413 (715)
. ... +.+ ..+++.+++.+.. .++.++..|+.+|..++..-.. .
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~----- 362 (462)
T 1ibr_B 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D----- 362 (462)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T-----
T ss_pred HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H-----
Confidence 3 110 110 2244555555532 3456777888887777533210 0
Q ss_pred cccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccc-hhhhcCCcHHHH
Q 005088 414 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGGGLELL 492 (715)
Q Consensus 414 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~~~i~~L 492 (715)
.-..+++.+...+.++++.+|..|+.+|+.++...... ..-.-...++.+
T Consensus 363 -----------------------------~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l 413 (462)
T 1ibr_B 363 -----------------------------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (462)
T ss_dssp -----------------------------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 11235667777888889999999999999998754311 111125789999
Q ss_pred HHHhcCCCcchhhhhHHHHHHhhhhcc
Q 005088 493 LGLLGSTNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 493 ~~ll~~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+..+.++++.+|..|+++|.+++....
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998753
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=6.1e-13 Score=132.18 Aligned_cols=230 Identities=13% Similarity=0.020 Sum_probs=180.1
Q ss_pred HHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhh
Q 005088 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (715)
Q Consensus 100 ~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (715)
....+.++.|+..|++++. .++..|+++|+++.. + +.++.|+.++.+.+.
T Consensus 19 ~~~~~~i~~L~~~L~~~~~------------~vr~~A~~~L~~~~~-~---------~~~~~L~~~l~d~~~-------- 68 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNS------------LKRISSARVLQLRGG-Q---------DAVRLAIEFCSDKNY-------- 68 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC-H---------HHHHHHHHHHTCSSH--------
T ss_pred HHHHhhHHHHHHHHHcCCH------------HHHHHHHHHHHccCC-c---------hHHHHHHHHHcCCCH--------
Confidence 3456789999999998776 999999999999872 2 247889999987664
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHhcCCcHHHH-HhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll 258 (715)
.++..++++|..+........ ..++.|. .++.++++.++..++++|..+...++.... .+++.|+.++
T Consensus 69 ~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l 137 (280)
T 1oyz_A 69 IRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA 137 (280)
T ss_dssp HHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh
Confidence 899999999999863222111 1223344 245778999999999999999854332222 3578899999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHH
Q 005088 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (715)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 338 (715)
.++++.++..++++|+++.. .+.++.|+.++.+.++.++..++++|+.+.... ...++.|
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L 197 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCF 197 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHH
Confidence 99999999999999998832 247899999999999999999999999984222 2346889
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 339 IEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 339 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
+.++.++++.+|..|+++|+++. ....++.|+.++.+++ ++..++.+|+.+.
T Consensus 198 ~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 198 VEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 99999999999999999999875 4567888999997754 8889999998874
No 69
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.50 E-value=4.6e-13 Score=147.48 Aligned_cols=397 Identities=16% Similarity=0.112 Sum_probs=258.0
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 62 lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
+++.+...++. .++.++..|+.+|+++. +++.... .++.+.++|.+.++ .||..|+.++.
T Consensus 87 ~~n~l~kdL~~--~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~------------~VRk~A~~al~ 146 (591)
T 2vgl_B 87 AVNSFVKDCED--PNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDP------------YVRKTAAVCVA 146 (591)
T ss_dssp THHHHGGGSSS--SSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCH------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCCh------------HHHHHHHHHHH
Confidence 34555555554 37778888888888875 3443333 35788999988777 99999999999
Q ss_pred hhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCC
Q 005088 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (715)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 220 (715)
+++ .+|+... ..+.++.+..+|.+.+. .++..|+.+|..++..++.........+.+..|+..+.+.+
T Consensus 147 ~i~~~~p~~~~---~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~ 215 (591)
T 2vgl_B 147 KLHDINAQMVE---DQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT 215 (591)
T ss_dssp HHHHSSCCCHH---HHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhhChhhcc---cccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC
Confidence 999 6666432 24568899999987654 99999999999999766543111111234567777777888
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhc---CChhHHHHHHHcCChHHHH
Q 005088 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVI 297 (715)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~g~l~~L~ 297 (715)
+-.+...+.+|..++..++... ..+++.+..++++.++.|+..|++++..+.. .+++....+ -..+.+.|+
T Consensus 216 ~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~ 289 (591)
T 2vgl_B 216 EWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLV 289 (591)
T ss_dssp HHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHH
T ss_pred chHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHH
Confidence 8888888898888875433322 2356778888899999999999999999863 233333332 234567777
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHH
Q 005088 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVP 376 (715)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~ 376 (715)
.++. .+++++..++.++..+....+...... +..+. .+.+++..+|..++..|.+++... .. .+++.
T Consensus 290 ~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~-----~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~-----~iv~~ 357 (591)
T 2vgl_B 290 TLLS-GEPEVQYVALRNINLIVQKRPEILKQE-----IKVFF-VKYNDPIYVKLEKLDIMIRLASQANIA-----QVLAE 357 (591)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTC-----TTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHH-----HHHHH
T ss_pred HHhc-CCccHHHHHHHHHHHHHHhChHHHHHH-----HHhhe-eccCChHHHHHHHHHHHHHHCChhhHH-----HHHHH
Confidence 6664 779999999999999986554432211 11121 222445889999999998887543 11 23456
Q ss_pred HHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHH------hhhhHHH
Q 005088 377 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI------HGRVLNH 450 (715)
Q Consensus 377 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~ 450 (715)
|..++.+.+..++..++++|++++..-.... ...++.|.+.... ........++..+...+ ...+++.
T Consensus 358 L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----~~~v~~Ll~ll~~--~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~ 431 (591)
T 2vgl_B 358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQT--KVNYVVQEAIVVIRDIFRKYPNKYESIIAT 431 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHSCSSCCTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 7777788899999999999999986532111 1222333322111 11111111222222221 2346677
Q ss_pred HHHHHhh-hhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 451 LLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 451 L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
|...+.+ .++.++..++++|+..+..-.+. ...++.+.+-+...++.+|..+..++.++....
T Consensus 432 L~~~l~~~~~~~~~~~~~wilGey~~~~~~~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 432 LCENLDSLDEPDARAAMIWIVGEYAERIDNA-----DELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp HHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCHHHHHHHHHHHHcccccccCH-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 7777764 46788888999999886553321 122333433334467788888888888887754
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.48 E-value=7.9e-13 Score=153.83 Aligned_cols=428 Identities=11% Similarity=0.083 Sum_probs=263.1
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcCh--hhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
++.+++.+...+... +...+..|+.+|+.++... ....... ..+++.+++.+.++++ .+|..+
T Consensus 367 ~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~------------~vr~~a 431 (861)
T 2bpt_A 367 LEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSL------------QVKETT 431 (861)
T ss_dssp HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCH------------HHHHHH
T ss_pred HHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcH------------HHHHHH
Confidence 455666666655543 5678999999999999752 2222222 2478889999988766 999999
Q ss_pred HHHHHhhc-CC-hhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCc-----cchhHHHhcCCc
Q 005088 137 AFALGLLA-VK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGI 209 (715)
Q Consensus 137 ~~~L~~l~-~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~g~i 209 (715)
+++++.++ .. +.....-.-...++.++..+.+. . .++..++++|.+++.... .....+ ...+
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il 500 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PALV 500 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHH
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHH
Confidence 99999998 21 11000001123467777777653 2 899999999999985321 121111 2456
Q ss_pred HHHHHhhccCC--HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC---------------CCHHHHHHHHHH
Q 005088 210 PPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGV 272 (715)
Q Consensus 210 ~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~---------------~~~~v~~~a~~~ 272 (715)
+.|+..+.+.+ +.++..++.++..++...+........ .+++.++..+.+ ....++..++.+
T Consensus 501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 579 (861)
T 2bpt_A 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579 (861)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHH
Confidence 77888887533 789999999999998644432222221 245666665542 134678889999
Q ss_pred HHHhhcCChhHHHHHHHcCChHHHHhhhccCCh-HHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHH
Q 005088 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (715)
Q Consensus 273 L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~ 351 (715)
|.+++...+...... -..+++.+...+.+.+. .++..++.+++.++........... ..+++.+...+.+.++.++.
T Consensus 580 l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~ 657 (861)
T 2bpt_A 580 LAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSI 657 (861)
T ss_dssp HHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHH
Confidence 999876544311111 12456777888887766 8899999999998754332222222 34788888888888889999
Q ss_pred HHHHHHHHhHHHHHHHH--HhcCChHHHHHhhccCC--hhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhh--
Q 005088 352 MSAFALGRLAQVITAGI--AHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFI-- 424 (715)
Q Consensus 352 ~a~~~L~~l~~~~~~~l--~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~-- 424 (715)
.++.++..++......+ .-..+++.+++.+.+.+ +.++..++.+++.++.. .+....+.. ..++.+......
T Consensus 658 ~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 658 TAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcCC
Confidence 99999999886652111 12345667777776654 88999999999998753 222221111 122222221110
Q ss_pred ----------hhhhhhHHHHHHHHHHH-------HH---hhhhHHHHHHHHhhh----hhhHHHHHHHHHHhhcCCC--c
Q 005088 425 ----------VQATKDCVAKTLKRLEE-------KI---HGRVLNHLLYLMRVA----EKGVQRRVALALAHLCSPD--D 478 (715)
Q Consensus 425 ----------~~~~~~~~~~~~~~~~~-------~~---~~~~l~~L~~ll~~~----~~~v~~~a~~aL~~l~~~~--~ 478 (715)
....+..+...+..+.. .+ -..+++.+...+.+. +..++..|+.+|+.++..- .
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 00011111111111111 11 123444555555553 7789999999999996532 2
Q ss_pred cchhhhcCCcHHHHHHHhc---CCCcchhhhhHHHHHHhhh
Q 005088 479 QRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 479 ~~~~~~~~~~i~~L~~ll~---~~~~~~~~~aa~~L~~L~~ 516 (715)
.-..+.....++.|+..+. +.+.+++..|.|++..+..
T Consensus 817 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 817 SIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp TTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 2222233356888777766 4566789999999887764
No 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=1.4e-12 Score=152.17 Aligned_cols=433 Identities=16% Similarity=0.124 Sum_probs=261.3
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhh-HHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (715)
.+.+++.+...+...+.+..++..++.+|.++... ... .........++.+..++.+.+. +++..+
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~a 237 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVAA 237 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHHH
Confidence 34445555554443322456789999999988752 211 1111112256777777765544 899999
Q ss_pred HHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCcc-----------------
Q 005088 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS----------------- 198 (715)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~----------------- 198 (715)
+++|..++ ..+..-...+....++.++..+.+.++ +++..++.++..++.....
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccc
Confidence 99999999 444432222333567777777655443 8899999999888753100
Q ss_pred -chhHH--HhcCCcHHHHHhhc-------cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHH
Q 005088 199 -IKTRV--RMEGGIPPLVELLE-------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268 (715)
Q Consensus 199 -~~~~~--~~~g~i~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~ 268 (715)
..... .-...++.++..+. +.+..++..+..+|..++...+. .+. ..+++.+...+.+++..+|..
T Consensus 310 ~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~ 385 (876)
T 1qgr_A 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDA 385 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHH
T ss_pred hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHH
Confidence 00000 01234566666664 23467899999999998853221 111 135666777788889999999
Q ss_pred HHHHHHHhhcCCh-hHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchh-HHHhhcCChHHHHHHhCCCC
Q 005088 269 AVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPD 346 (715)
Q Consensus 269 a~~~L~~L~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~L~~~~ 346 (715)
++++|+.++.+.. +.... .-.++++.++..+.+.++.++..|++++++++...+... ..-.-..+++.|+..+.++
T Consensus 386 a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~- 463 (876)
T 1qgr_A 386 AVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE- 463 (876)
T ss_dssp HHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-
Confidence 9999999987643 32222 224578899999999999999999999999986543211 0011134677888888774
Q ss_pred HHHHHHHHHHHHHhHHHHHH--------------HH--HhcCChHHHHHhhccC---ChhHHHHHHHHHHhccCCCc-hh
Q 005088 347 VQLREMSAFALGRLAQVITA--------------GI--AHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNED-NV 406 (715)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~--------------~l--~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~-~~ 406 (715)
+.++..++++|.+++..... .+ .-..+++.|+..+... +..++..+..++..++.... ..
T Consensus 464 ~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 543 (876)
T 1qgr_A 464 PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC 543 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhh
Confidence 89999999999999865420 01 0123556666666543 45788888999888864322 11
Q ss_pred hHHHhhccccccccchhhh--------h-hh-------h----hHHHHHHHHHH-H---HHhhhhHHHHHHHHhhhh--h
Q 005088 407 ADFIRVGGVQKLQDGEFIV--------Q-AT-------K----DCVAKTLKRLE-E---KIHGRVLNHLLYLMRVAE--K 460 (715)
Q Consensus 407 ~~l~~~~~i~~L~~~~~~~--------~-~~-------~----~~~~~~~~~~~-~---~~~~~~l~~L~~ll~~~~--~ 460 (715)
..+.. ..++.+....... . .. . .|+......+. . -....+++.++.++.+.. +
T Consensus 544 ~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 622 (876)
T 1qgr_A 544 YPAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622 (876)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCC
Confidence 11111 1222222111100 0 00 0 11111111111 1 112346777777777764 4
Q ss_pred hHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCC-CcchhhhhHHHHHHhhhhc
Q 005088 461 GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 461 ~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~aa~~L~~L~~~~ 518 (715)
.++..++.++..++........-+-...++.+...+.+. ++.++..|.+++..|....
T Consensus 623 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 789999999999975432211111134678888888876 8889999999999988754
No 72
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=2.5e-12 Score=149.68 Aligned_cols=431 Identities=14% Similarity=0.088 Sum_probs=262.7
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHHhcC-hhh-HHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHH
Q 005088 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (715)
Q Consensus 61 ~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (715)
.+++.+...+...+.++.++..++.+|.++... ... .........++.+...+.+.+. +++..++.
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------~~r~~a~~ 246 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAAFG 246 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH------------HHHHHHHH
Confidence 344444444333222567899999999887541 111 0000011246667777766555 99999999
Q ss_pred HHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCcc--------------chhHH
Q 005088 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--------------IKTRV 203 (715)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~--------------~~~~~ 203 (715)
+|..++ ..++.-........++.+...+.+.++ .++..++.++..++..... ....+
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPND--------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA 318 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH
Confidence 999998 333321111211456666666655443 8999999999988753211 00001
Q ss_pred --HhcCCcHHHHHhhcc-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005088 204 --RMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 274 (715)
Q Consensus 204 --~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~ 274 (715)
.-...++.++..+.. ++..++..+..+|..++...+. .+. ..+++.+...+.+.+..++..++.+++
T Consensus 319 ~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~ 394 (861)
T 2bpt_A 319 LSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFG 394 (861)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHH
Confidence 113456777777764 2357899999999998853221 111 124566677778889999999999999
Q ss_pred HhhcCCh-hHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchh-HHHhhcCChHHHHHHhCCCCHHHHHH
Q 005088 275 NLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREM 352 (715)
Q Consensus 275 ~L~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~L~~~~~~v~~~ 352 (715)
.++.+.. ....... ..+++.++..+.+.++.++..+++++++++....... ..-.-..+++.++..+.++ +.++..
T Consensus 395 ~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~ 472 (861)
T 2bpt_A 395 SIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATN 472 (861)
T ss_dssp HTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHH
T ss_pred HHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHH
Confidence 9986643 2222222 2478889999999999999999999999985321110 0001134578888888775 999999
Q ss_pred HHHHHHHhHHHHH----HHHH--hcCChHHHHHhhccC--ChhHHHHHHHHHHhccCCC-chhhHHHhhccccccccchh
Q 005088 353 SAFALGRLAQVIT----AGIA--HNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEF 423 (715)
Q Consensus 353 a~~~L~~l~~~~~----~~l~--~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~i~~L~~~~~ 423 (715)
|+++|.+++.... ..+. -..+++.+++.+.+. ++.++..++.++..++... +....... ..++.+.+...
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence 9999999987531 1110 123466777777643 4789999999999996432 22211111 12222222111
Q ss_pred hh----------------hhhhhHHHHHHHHHHHH-------HhhhhHHHHHHHHhhhhh-hHHHHHHHHHHhhcCCCcc
Q 005088 424 IV----------------QATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQ 479 (715)
Q Consensus 424 ~~----------------~~~~~~~~~~~~~~~~~-------~~~~~l~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~ 479 (715)
.. ......+...+..+-.. ....+++.++..+.+.+. .++..++.++..++.....
T Consensus 552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK 631 (861)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh
Confidence 00 00001111122211111 123567778888888776 8999999999998654332
Q ss_pred chhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 480 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 480 ~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
...-+-...++.|...+.++++.++..+..++..+....
T Consensus 632 ~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 632 GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 222122357888888888888999999999998888753
No 73
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.45 E-value=7.8e-11 Score=130.10 Aligned_cols=345 Identities=14% Similarity=0.153 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHhc-ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcC
Q 005088 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (715)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~ 157 (715)
.+.-+--.+..++. +++.... ++..|.+-|+++++ .++..|+++|+++.. ++.. ..
T Consensus 86 ~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~------------~vr~lAL~~L~~i~~-~~~~-----~~ 142 (618)
T 1w63_A 86 DKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ------------FVQGLALCTLGCMGS-SEMC-----RD 142 (618)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS------------HHHHHHHHHHHHHCC-HHHH-----HH
T ss_pred HHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH------------hHHHHHHHHHHhcCC-HHHH-----HH
Confidence 34444445555555 3432222 36677888888877 999999999999984 3332 23
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (715)
.++.+..+|.+.++ .++..|+.++.++...+++.. .+.++.+..++.+.++.++..|+.+|..++..
T Consensus 143 l~~~l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 143 LAGEVEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 57888889988765 999999999999998666533 26778889999999999999999999999975
Q ss_pred ChhhHHHHHhCCChHHHHHhhcC---------------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc-
Q 005088 238 NDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS- 301 (715)
Q Consensus 238 ~~~~~~~~~~~g~l~~L~~ll~~---------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~- 301 (715)
+++....+. ..++.++.+|.+ .++-.+..++.+|+.++..++... ....+.|..++.
T Consensus 210 ~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~ 282 (618)
T 1w63_A 210 SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATN 282 (618)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHT
T ss_pred ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhc
Confidence 544322332 577888877653 478889999999999987665432 235556666553
Q ss_pred -----cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHH
Q 005088 302 -----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVP 376 (715)
Q Consensus 302 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~ 376 (715)
+.+..+..+++.++..+.. .+. +. ..++..|..++.++++.+|..|+.+|..++......+. .....
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l~~-~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~--~~~~~ 354 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDIKS-ESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ--RHRST 354 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHSCC-CHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG--GGHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCC-CHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH--HHHHH
Confidence 2235788899999988743 221 11 13567888899999999999999999999876633222 25567
Q ss_pred HHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 005088 377 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 456 (715)
Q Consensus 377 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~ 456 (715)
++.++.+++..++..|+.+|..++... |... +++.|...+.
T Consensus 355 i~~~l~d~d~~Ir~~alelL~~l~~~~-nv~~--------------------------------------iv~eL~~~l~ 395 (618)
T 1w63_A 355 IVDCLKDLDVSIKRRAMELSFALVNGN-NIRG--------------------------------------MMKELLYFLD 395 (618)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHCCSS-STHH--------------------------------------HHHHHHHHHH
T ss_pred HHHHccCCChhHHHHHHHHHHHHcccc-cHHH--------------------------------------HHHHHHHHHH
Confidence 889999999999999999999998643 2221 4456778888
Q ss_pred hhhhhHHHHHHHHHHhhcCCCc-cchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 457 VAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 457 ~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
+.+.+++..++.+|+.++.... ... ..++.|++++...+..++..+..++..+..+.
T Consensus 396 ~~d~e~r~~~v~~I~~la~k~~~~~~-----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~ 453 (618)
T 1w63_A 396 SCEPEFKADCASGIFLAAEKYAPSKR-----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS 453 (618)
T ss_dssp HCCHHHHHHHHHHHHHHHHSSCCCHH-----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred hCCHHHHHHHHHHHHHHHHHhCccHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 8899999999999999976532 211 24778888888877778888888888887753
No 74
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.42 E-value=7.4e-12 Score=145.94 Aligned_cols=384 Identities=12% Similarity=0.081 Sum_probs=253.3
Q ss_pred hHHHHHHHHHHHHHHhc-ChhhHHH-----H------HhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhh
Q 005088 76 DRAAAKRATHVLAELAK-NEEVVNW-----I------VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~-----~------~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (715)
++.++..|+..|.+... ....+.. . ....+-+.+++.|.+.+. .+ ..++.+++.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~------------~~-~~~~~~l~~i 116 (876)
T 1qgr_A 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY------------RP-SSASQCVAGI 116 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS------------SS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH------------HH-HHHHHHHHHH
Confidence 56688889999998654 2111100 0 011123347777876655 56 7888888888
Q ss_pred cC--ChhhHHHHHhcCChHHHHHHHccc--cCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC
Q 005088 144 AV--KPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (715)
Q Consensus 144 ~~--~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 219 (715)
+. .+.. .-...++.++..+.+. +. .++..++.+|..++.........-.....++.+...+.++
T Consensus 117 ~~~~~~~~----~w~~ll~~l~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 184 (876)
T 1qgr_A 117 ACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE 184 (876)
T ss_dssp HHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT
T ss_pred HHhhCccc----ccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCC
Confidence 72 1211 0234678888888765 33 8899999999999864211000011123556677777776
Q ss_pred --CHHHHHHHHHHHHHHhcCChhhHH-HHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHH
Q 005088 220 --DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (715)
Q Consensus 220 --~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L 296 (715)
+..++..++.++..++..-..... ......+++.+...+.+++++++..++.+|..++...+......+...+++.+
T Consensus 185 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~ 264 (876)
T 1qgr_A 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAIT 264 (876)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 689999999999998753221110 00111256777778888899999999999999987655443333334678888
Q ss_pred HhhhccCChHHHHHHHHHHHHHhcCCcc------------------hhHHH--hhcCChHHHHHHhC-------CCCHHH
Q 005088 297 IGLLSSCCSESQREAALLLGQFAATDSD------------------CKVHI--VQRGAVRPLIEMLQ-------SPDVQL 349 (715)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~l~~L~~~L~-------~~~~~v 349 (715)
+..+.+.++.++..++..+.+++..... ..... .-..+++.++..+. +.++.+
T Consensus 265 ~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~ 344 (876)
T 1qgr_A 265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 344 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHH
Confidence 8888888889999999988888643100 00000 01235677777775 245789
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhh
Q 005088 350 REMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK 429 (715)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~ 429 (715)
|..|..+|..++......+. ..+++.+...+.+.++.+|..|+++++.++..... ..+.
T Consensus 345 r~~a~~~l~~l~~~~~~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~~------------------- 403 (876)
T 1qgr_A 345 CKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP-SQLK------------------- 403 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHHH-------------------
T ss_pred HHHHHHHHHHHHHHCcHhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH-HHHH-------------------
Confidence 99999999999876632222 24556667777889999999999999999854320 0000
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccch--hhhcCCcHHHHHHHhcCCCcchhhhh
Q 005088 430 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT--IFIDGGGLELLLGLLGSTNPKQQLDG 507 (715)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~~~~~i~~L~~ll~~~~~~~~~~a 507 (715)
. ....+++.++..+.++++.+|..|+.+|++++....... .-.-...++.|...+.++ +.++..|
T Consensus 404 -----------~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a 470 (876)
T 1qgr_A 404 -----------P-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNV 470 (876)
T ss_dssp -----------H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred -----------H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 0 112367888999999999999999999999975432210 011235677788888774 8899999
Q ss_pred HHHHHHhhhhc
Q 005088 508 AVALFKLANKA 518 (715)
Q Consensus 508 a~~L~~L~~~~ 518 (715)
+++|.++....
T Consensus 471 ~~al~~l~~~~ 481 (876)
T 1qgr_A 471 CWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=3.4e-12 Score=120.78 Aligned_cols=190 Identities=23% Similarity=0.245 Sum_probs=157.9
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhH
Q 005088 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (715)
Q Consensus 248 ~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (715)
.+.++.|+.+|.++++.++..++..|+.+.. .+.++.|+.++.+.++.++..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4578999999999999999999999999832 2467889999999999999999999999842
Q ss_pred HHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhh
Q 005088 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 407 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (715)
.+.++.|+.+|.++++.+|..++.+|+.+. ..+.++.|+.++.++++.++..|+.+|+++...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE----- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-----
Confidence 346789999999999999999999998874 345788999999999999999999999998421
Q ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCC
Q 005088 408 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 487 (715)
Q Consensus 408 ~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 487 (715)
..++.|..++.++++.++..|+.+|..+.. ..
T Consensus 143 --------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~ 174 (211)
T 3ltm_A 143 --------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ER 174 (211)
T ss_dssp --------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HH
T ss_pred --------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hh
Confidence 145678888899999999999999999842 45
Q ss_pred cHHHHHHHhcCCCcchhhhhHHHHHHhhhhccc
Q 005088 488 GLELLLGLLGSTNPKQQLDGAVALFKLANKATT 520 (715)
Q Consensus 488 ~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~~~ 520 (715)
.++.|..++.++++.+|..|+.+|.++..+...
T Consensus 175 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 175 VRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 688899999999999999999999998887543
No 76
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.40 E-value=1.5e-11 Score=135.76 Aligned_cols=399 Identities=16% Similarity=0.138 Sum_probs=262.5
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 62 lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
.++.|...+.++ ++.++..|+++|+++.. ++.. ...++.+..+|.+.++ .||..|+.++.
T Consensus 108 ~in~l~kDL~~~--n~~vr~lAL~~L~~i~~-~~~~-----~~l~~~l~~~L~~~~~------------~VRk~A~~al~ 167 (618)
T 1w63_A 108 MTNCIKNDLNHS--TQFVQGLALCTLGCMGS-SEMC-----RDLAGEVEKLLKTSNS------------YLRKKAALCAV 167 (618)
T ss_dssp HHHHHHHHHSCS--SSHHHHHHHHHHHHHCC-HHHH-----HHHHHHHHHHHHSCCH------------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--CHhHHHHHHHHHHhcCC-HHHH-----HHHHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 344444444433 66688889999999874 3322 2357888999998877 99999999999
Q ss_pred hhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhcc--
Q 005088 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-- 218 (715)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-- 218 (715)
++. .+|+.. .+.++.+..+|.+.+. .++..|+.+|..++..+++....+ ...++.++.+|.+
T Consensus 168 ~l~~~~p~~v-----~~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~ 232 (618)
T 1w63_A 168 HVIRKVPELM-----EMFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLI 232 (618)
T ss_dssp HHHHHCGGGG-----GGGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHH
T ss_pred HHHHHChHHH-----HHHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHH
Confidence 999 677653 2567778888877654 899999999999987554432222 2577888877753
Q ss_pred -------------CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc------CCCHHHHHHHHHHHHHhhcC
Q 005088 219 -------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHS 279 (715)
Q Consensus 219 -------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~------~~~~~v~~~a~~~L~~L~~~ 279 (715)
.++-.+..++.+|..++..++... ....+.|..++. +.+..+...|++++..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~- 306 (618)
T 1w63_A 233 MSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS- 306 (618)
T ss_dssp HSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-
T ss_pred cCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-
Confidence 478888999999999997655432 234556666653 2356899999999999843
Q ss_pred ChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005088 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (715)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~ 359 (715)
.+.... .+++.|..++.+.++.++..|+.+|..++...+. ++ ......++..+.+++..+|..|+.+|..
T Consensus 307 ~~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 307 ESGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp CHHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred CHHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 232211 3567788889888999999999999999864332 22 2345788889999999999999999999
Q ss_pred hHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhhhhh-hhhHHHHHH
Q 005088 360 LAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQA-TKDCVAKTL 436 (715)
Q Consensus 360 l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~-~~~~~~~~~ 436 (715)
++... -.. +++.|+..+.+.+.+++..++.+|+.++.. +++....+. ..++.|......... ...++...+
T Consensus 377 l~~~~nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~-~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 377 LVNGNNIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHID-TIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HCCSSSTHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHH-HHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred HcccccHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHH-HHHHHHHhccchhHHHHHHHHHHHH
Confidence 87644 222 346777888889999999999999999754 233222211 111111111000000 001111111
Q ss_pred HHHHHHHhhhhHHHHHHHHhhh--hhhHHHHHHHHHHhhcCCCcc-------chhhhcCCcHHHHHHHhc--CCCcchhh
Q 005088 437 KRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQ-------RTIFIDGGGLELLLGLLG--STNPKQQL 505 (715)
Q Consensus 437 ~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-------~~~~~~~~~i~~L~~ll~--~~~~~~~~ 505 (715)
... .-....+++.|+.++.+. ...+...++++|+..+..-.+ -........++.|..++. ..++.+|.
T Consensus 451 ~~~-p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~ 529 (618)
T 1w63_A 451 TNS-VEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRG 529 (618)
T ss_dssp HHS-CSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred hcC-hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 110 011334677788888763 344455789999988532110 000111234666777765 46788999
Q ss_pred hhHHHHHHhhhhc
Q 005088 506 DGAVALFKLANKA 518 (715)
Q Consensus 506 ~aa~~L~~L~~~~ 518 (715)
.+..++.++..+.
T Consensus 530 ~~lta~~Kl~~~~ 542 (618)
T 1w63_A 530 YALTAIMKLSTRF 542 (618)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988864
No 77
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.40 E-value=9.2e-12 Score=117.79 Aligned_cols=189 Identities=28% Similarity=0.308 Sum_probs=158.1
Q ss_pred cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 206 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
.+.++.|+..|+++++.++..++.+|..+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4578899999999999999999999998863 2578999999999999999999999999842
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~ 365 (715)
.+.++.|+.++.+.++.++..++.+|+.+.. ...++.|+.++.++++.+|..|+.+|+++.
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---- 140 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---- 140 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----
Confidence 2367889999999999999999999999842 246789999999999999999999999874
Q ss_pred HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhh
Q 005088 366 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 445 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (715)
....++.|..+++++++.++..++.+|+.+.. .
T Consensus 141 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------------------------~ 173 (211)
T 3ltm_A 141 ----DERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------------------------------E 173 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------H
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------h
Confidence 24578899999999999999999999999842 1
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCc
Q 005088 446 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 446 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 478 (715)
..++.|..++.++++.+|..|..+|.++.....
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 146678888999999999999999999976544
No 78
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.40 E-value=1e-10 Score=130.36 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=149.0
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHH-HhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L-~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
+.++++.|.+. ++..+..|+++|++++.++..+..+...|+|..+ ..+|.+++. +|+.+|+
T Consensus 36 i~Pll~~L~S~------~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A~ 97 (684)
T 4gmo_A 36 ILPVLKDLKSP------DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAGW 97 (684)
T ss_dssp THHHHHHHSSS------CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHHH
T ss_pred HHHHHHHcCCC------CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHHH
Confidence 44455554433 5667999999999999999999999999988775 567887777 9999999
Q ss_pred HHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCC-------------CcchhhhHHHHHHHHHHHHHhccCccchhH
Q 005088 138 FALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDS-------------NCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (715)
Q Consensus 138 ~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~-------------~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (715)
++|+||+ .+++.+..+...|++++|..+++..... ...+..+++...++.+|++||..+......
T Consensus 98 gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~ 177 (684)
T 4gmo_A 98 EILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA 177 (684)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999 6789999999999999999998653110 001123466778899999999888888878
Q ss_pred HHhcCCcHHHHHhhcc---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH---HHHHhhcCCCHHHHHHHHHHHHHh
Q 005088 203 VRMEGGIPPLVELLEF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP---TLILMLRSEDSAIHYEAVGVIGNL 276 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~---~L~~ll~~~~~~v~~~a~~~L~~L 276 (715)
+...++++.|+.+|.+ ...+++..|+.+|..++.+++.....+.+.+... .+..+..+. ...+..++++|.|+
T Consensus 178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni 256 (684)
T 4gmo_A 178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNV 256 (684)
T ss_dssp HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhH
Confidence 8888999999998853 2468999999999999998888877777765433 232222222 22344455565554
No 79
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.39 E-value=3.6e-12 Score=136.70 Aligned_cols=342 Identities=11% Similarity=0.080 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHhcChh--hHHH----------HHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhh
Q 005088 76 DRAAAKRATHVLAELAKNEE--VVNW----------IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~--~~~~----------~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (715)
++.++..|+..|.++..... .... -....+-..|++.|.+.+. .+ ..++.+++.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~------------~v-~~~~~~i~~i 116 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY------------RP-SSASQCVAGI 116 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS------------SS-CSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc------------hh-hHHHHHHHHH
Confidence 56788999999999875310 0000 0111233457777877666 67 7899999999
Q ss_pred c-C-ChhhHHHHHhcCChHHHHHHHccc--cCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCcHHHHHhhcc
Q 005088 144 A-V-KPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEF 218 (715)
Q Consensus 144 ~-~-~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~ 218 (715)
+ . .+.. .-.+.++.|+..+.+. +. .++..++.+|..++... +...... ....++.++.++.+
T Consensus 117 a~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 117 ACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRK 183 (462)
T ss_dssp HHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHST
T ss_pred HHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCC
Confidence 8 2 2321 1245788888888775 33 88999999999999643 2211111 12466788888888
Q ss_pred C--CHHHHHHHHHHHHHHhcCChhhHH-HHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHH
Q 005088 219 T--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (715)
Q Consensus 219 ~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~ 295 (715)
+ ++.++..|+.++.++...-..... .....-+++.+...+.+++++++..++.+|..++...+......+..++++.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 263 (462)
T 1ibr_B 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263 (462)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 789999999999987642111110 0001113566777778889999999999999997655432111111156777
Q ss_pred HHhhhccCChHHHHHHHHHHHHHhcCCcc-----------------hhHHHhh---cCChHHHHHHhCC-------CCHH
Q 005088 296 VIGLLSSCCSESQREAALLLGQFAATDSD-----------------CKVHIVQ---RGAVRPLIEMLQS-------PDVQ 348 (715)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~~~~---~~~l~~L~~~L~~-------~~~~ 348 (715)
++..+.+.+++++..++..+..++..... ....+.+ ..++|.++..+.. .++.
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 77888888899999999998888753100 0000111 3356677777743 3467
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhh
Q 005088 349 LREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 428 (715)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 428 (715)
+|..|+.+|..++......+. ..+++.+...+.+.++.++..|+.+++.++..... ..+..
T Consensus 344 ~r~~a~~~L~~l~~~~~~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-------~~~~~----------- 404 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP-------SQLKP----------- 404 (462)
T ss_dssp HHHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT-------TTTCT-----------
T ss_pred HHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH-------HHHHH-----------
Confidence 899999999999876522222 24566777788899999999999999999864320 00000
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q 005088 429 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 476 (715)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 476 (715)
.-..+++.+++.+.++++.||..|+.+|++++..
T Consensus 405 --------------~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 405 --------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp --------------TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 0133788899999999999999999999999754
No 80
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.37 E-value=3e-12 Score=113.12 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=91.4
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcC-CCC-CCCCCceecCCCCHHHHHHHHHHHhcCC----------------
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG-GYR-EKDARDIEIPNIRWEVFELMMRFIYTGS---------------- 610 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~-~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~---------------- 610 (715)
|++.. +|..|.+|+.+ +..|+||+.||.+ ++. |+....|+++++++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 56654 78999999999 8899999999998 666 6667789999999999999999999987
Q ss_pred ----------cccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCcH
Q 005088 611 ----------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHAI 663 (715)
Q Consensus 611 ----------~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i---~~~~~~~~~~~a~~~~~~ 663 (715)
+.++.+++.+|+.+|++|++..|.+.|..++...+ +++.+..++.+...|..+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~e 147 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEE 147 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTT
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHH
Confidence 67889999999999999999999999999987665 555555555555444433
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=3.3e-11 Score=112.99 Aligned_cols=185 Identities=28% Similarity=0.312 Sum_probs=158.0
Q ss_pred cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 206 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
.+..+.++.+|+++++.++..|+.+|..+.. .+.++.|+.++.++++.++..++++|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 3567889999999999999999999998863 2468899999999999999999999999832 2
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~ 365 (715)
+.++.|+..+.+.++.++..++++|+++.. ...++.|+.++.++++.+|..|+++|+.+.
T Consensus 76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---- 135 (201)
T 3ltj_A 76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---- 135 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT----
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 367889999999999999999999999842 236789999999999999999999998874
Q ss_pred HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhh
Q 005088 366 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 445 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (715)
....++.|..++++.++.++..|+.+|+.+.. .
T Consensus 136 ----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------------------------------------~ 168 (201)
T 3ltj_A 136 ----DERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------------------------------E 168 (201)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------H
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------h
Confidence 34678899999999999999999999999831 1
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 005088 446 RVLNHLLYLMRVAEKGVQRRVALALAHLC 474 (715)
Q Consensus 446 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 474 (715)
..++.|..++.++++.++..|..+|..+.
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 14667888889999999999999999874
No 82
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=1.9e-11 Score=114.67 Aligned_cols=185 Identities=24% Similarity=0.264 Sum_probs=157.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHH
Q 005088 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (715)
Q Consensus 249 g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (715)
+..+.++.+|.++++.++..++.+|+.+.. .+.++.|+..+.+.++.++..++.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 456789999999999999999999999832 2367889999999999999999999998842
Q ss_pred HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhH
Q 005088 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 408 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (715)
...++.|+..|.++++.+|..|+++|+.+. ....++.|+.++.++++.++..|+++|+++...
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 137 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------ 137 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------
Confidence 246799999999999999999999998874 235788899999999999999999999997421
Q ss_pred HHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCc
Q 005088 409 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 488 (715)
Q Consensus 409 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 488 (715)
..++.|+.++.++++.++..|+.+|..+. ....
T Consensus 138 -------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~ 170 (201)
T 3ltj_A 138 -------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------GERV 170 (201)
T ss_dssp -------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHH
T ss_pred -------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhH
Confidence 14667888899999999999999999983 2357
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 489 LELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 489 i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
++.|..++.++++.+|..|+.+|.++..
T Consensus 171 ~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 171 RAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999988764
No 83
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.24 E-value=8.1e-10 Score=133.17 Aligned_cols=427 Identities=12% Similarity=0.067 Sum_probs=259.3
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHh
Q 005088 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 57 ~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
..++.+++.|.+ .++.++..|+.+|+.++.. +.... .+++.|+..|.+++. .+|.
T Consensus 48 ~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l~d~~~------------~vR~ 104 (1230)
T 1u6g_C 48 KVVKMILKLLED------KNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKE------------QLRD 104 (1230)
T ss_dssp HHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSS------------HHHH
T ss_pred HHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcCCcH------------HHHH
Confidence 445555555542 3677899999999999874 32222 256788888887777 8999
Q ss_pred hHHHHHHhhc-C-Chh-----hHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcC
Q 005088 135 GSAFALGLLA-V-KPE-----HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (715)
Q Consensus 135 ~a~~~L~~l~-~-~~~-----~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g 207 (715)
.++.+|+.++ . .+. ... -.....+|.|+..+.+..+ +.++..++.+|..++...+..-.. ....
T Consensus 105 ~a~~~L~~i~~~l~~~~~~~~~~~-~~~~~llp~L~~~l~~~~~-------~~~~~~al~~l~~~~~~~~~~l~~-~~~~ 175 (1230)
T 1u6g_C 105 ISSIGLKTVIGELPPASSGSALAA-NVCKKITGRLTSAIAKQED-------VSVQLEALDIMADMLSRQGGLLVN-FHPS 175 (1230)
T ss_dssp HHHHHHHHHHHHCC-----CCTHH-HHHHHHHHHHHHHHSCCSC-------HHHHHHHHHHHHHHHHHTCSSCTT-THHH
T ss_pred HHHHHHHHHHHhCCCcccccchHH-HHHHHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 9999999998 2 222 011 1123467888888874222 289999999999998533221110 1134
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh---------HHH-------------------HHh----------CC
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---------KNQ-------------------IVE----------CN 249 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---------~~~-------------------~~~----------~g 249 (715)
.++.++..+.++++.++..|+.+|..++...+.. ... +.. ..
T Consensus 176 ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 255 (1230)
T 1u6g_C 176 ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEK 255 (1230)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTT
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5667777888888899999999998887532210 000 000 23
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc----------------------------
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------------------------- 301 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~---------------------------- 301 (715)
+++.++..+.++++++|..++.++..++...++...... ..+++.++..+.
T Consensus 256 l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 256 IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp HHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 456667777777888999999988888664332111111 123333433332
Q ss_pred ---------cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH-------
Q 005088 302 ---------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT------- 365 (715)
Q Consensus 302 ---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~------- 365 (715)
+..++++..|+.++..++...+.....+. ..+++.++..+.+.++.+|..++.++..+.....
T Consensus 335 ~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 413 (1230)
T 1u6g_C 335 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLC 413 (1230)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccccc
Confidence 11256788899999999864443222233 4677888888888899999999999988875320
Q ss_pred ------------HH--HHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhhhhhhhh
Q 005088 366 ------------AG--IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKD 430 (715)
Q Consensus 366 ------------~~--l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~ 430 (715)
.. -.-..+++.+.+.+++.++.++..++.+|+.++.. +....... ...++.+............
T Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~~ 492 (1230)
T 1u6g_C 414 DPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDKSSSSN 492 (1230)
T ss_dssp -------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCHH
T ss_pred CccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCCCCcch
Confidence 00 01123455566668899999999999999988643 11111100 0111122211111110011
Q ss_pred HHHHHHHHHHHH-----------HhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCC--C-----ccchhhhcCCcHHHH
Q 005088 431 CVAKTLKRLEEK-----------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D-----DQRTIFIDGGGLELL 492 (715)
Q Consensus 431 ~~~~~~~~~~~~-----------~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~-----~~~~~~~~~~~i~~L 492 (715)
....++..+... +-..+++.|+..+.+.++.++..|+.++..++.. + .....-+-...++.+
T Consensus 493 v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~l 572 (1230)
T 1u6g_C 493 LKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 572 (1230)
T ss_dssp HHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 111122111111 2345778888888888888888888888887632 1 011111123567777
Q ss_pred HHHh--cCCCcchhhhhHHHHHHhhhhc
Q 005088 493 LGLL--GSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 493 ~~ll--~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
+..+ .+.++.+|..|+.++..|+...
T Consensus 573 l~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 573 IKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 8878 5677889999999999998864
No 84
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.17 E-value=1e-09 Score=132.24 Aligned_cols=420 Identities=15% Similarity=0.083 Sum_probs=253.8
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhh-HHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
++.+++.+.+. |+..+..|...|.+....+.. ...-.....++.+++.|.+.+. .+|..|+
T Consensus 8 l~~lL~~l~s~------d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~ 69 (1230)
T 1u6g_C 8 ISNLLEKMTSS------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAV 69 (1230)
T ss_dssp HHHHHHHTTCS------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHH
T ss_pred HHHHHHhcCCC------CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHH
Confidence 44555555443 677889998888887653210 0000011347788888876555 9999999
Q ss_pred HHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccch-----hHHHhcCCcHH
Q 005088 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPP 211 (715)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~~g~i~~ 211 (715)
.+|+.++ ..++. . ...+++.++..+.+.+. .++..++.+|..++....... ..-.....+|.
T Consensus 70 ~~L~~l~~~~~~~--~--~~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~ 137 (1230)
T 1u6g_C 70 KCLGPLVSKVKEY--Q--VETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGR 137 (1230)
T ss_dssp HHHHHHHTTSCHH--H--HHHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHH--H--HHHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH
Confidence 9999998 33321 1 11246677777766554 788999999999885433220 01122356788
Q ss_pred HHHhhc-cCCHHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 212 LVELLE-FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 212 L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
|+..+. ++++.++..|+.+|..++...+.. ...+ ..+++.++..+.++++.+|..++.+|+.++...++. + -
T Consensus 138 L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~ 211 (1230)
T 1u6g_C 138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-F 211 (1230)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------C
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-H
Confidence 888888 578999999999999998522110 0001 235667777888889999999999999997654321 1 2
Q ss_pred cCChHHHHhhhccCC-hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 005088 290 AGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGI 368 (715)
Q Consensus 290 ~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l 368 (715)
..+++.++..+.+.+ ..++..++.+++.++...+...... -..+++.++..+.+.++.+|..++.++..++......+
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 345777777776543 4677778888888876443321111 24688999999998899999999999999887541100
Q ss_pred --HhcCChHHHHHhhc-------------------------------------cCChhHHHHHHHHHHhccCCCch-hhH
Q 005088 369 --AHNGGLVPLLKLLD-------------------------------------SKNGSLQHNAAFALYGLADNEDN-VAD 408 (715)
Q Consensus 369 --~~~~~l~~L~~ll~-------------------------------------~~~~~v~~~a~~~L~~l~~~~~~-~~~ 408 (715)
.-...++.+++.+. +..+.+|..|+.++..++..... ...
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 00122333333221 12356899999999988754221 122
Q ss_pred HHhhccccccccchhh-hhhhhhHHHHHH----HHH----------------------HHHHhhhhHHHHHHHHhhhhhh
Q 005088 409 FIRVGGVQKLQDGEFI-VQATKDCVAKTL----KRL----------------------EEKIHGRVLNHLLYLMRVAEKG 461 (715)
Q Consensus 409 l~~~~~i~~L~~~~~~-~~~~~~~~~~~~----~~~----------------------~~~~~~~~l~~L~~ll~~~~~~ 461 (715)
+.. ..++.+...... ....+..+..++ ... -...-..+++.+.+.+++.++.
T Consensus 371 ~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 371 FYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 221 122222221100 000011111111 100 0112234556666668888999
Q ss_pred HHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCc--chhhhhHHHHHHhhh
Q 005088 462 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP--KQQLDGAVALFKLAN 516 (715)
Q Consensus 462 v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~~aa~~L~~L~~ 516 (715)
++..++.+|+.++........-.-...++.+...+.+.++ .++..++.++..+..
T Consensus 450 vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999886542211111123567888888888765 788888888887765
No 85
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.09 E-value=2.3e-10 Score=91.42 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=64.6
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHh-----c---CCcc---cCH
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL 615 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~---~~~~---~~~ 615 (715)
|.+.. +|..|.+||.+ +..|+||+.||.+ ++.|+....|+++++++.+++.+++|+| + +.++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 34443 68999999999 8899999999987 6778778899999999999999999999 4 6666 889
Q ss_pred HHHHHHHHHHHHhC
Q 005088 616 DIAQDLLRAADQYL 629 (715)
Q Consensus 616 ~~~~~ll~~A~~~~ 629 (715)
+++.+|+.+|++|+
T Consensus 83 ~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 83 EIALELLMAANFLD 96 (97)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999999986
No 86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.09 E-value=3.3e-08 Score=108.63 Aligned_cols=352 Identities=15% Similarity=0.174 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH
Q 005088 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (715)
+...+.-+--.+..++.. ++.... ++..+.+=|+++++ -++..|+++|+++.. ++...
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~------------~ir~lALr~L~~i~~-~e~~~--- 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP------------TFMGLALHCIANVGS-REMAE--- 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH------------HHHHHHHHHHHHHCC-HHHHH---
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH------------HHHHHHHHHhhccCC-HHHHH---
Confidence 444555555566666653 443222 25566667777776 899999999999963 44322
Q ss_pred hcCChHHHHHHH--ccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (715)
Q Consensus 155 ~~~~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (715)
..++.+.+++ .+.++ .++..|+.++.++...+++... ..+.++.+..+|.++++.++..|+.++.
T Consensus 146 --~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 146 --AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp --HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3568888888 55554 9999999999999976664322 2478899999999999999999999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHH----HhhcCC-------------CHHHHHHHHHHHHHhhcC-ChhHHHHHHHcCChH
Q 005088 233 TLAFKNDENKNQIVECNALPTLI----LMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQ 294 (715)
Q Consensus 233 ~L~~~~~~~~~~~~~~g~l~~L~----~ll~~~-------------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~ 294 (715)
.++..++..- ...++.++ +++... ++-.+...+..|..++.. +++....+.+ .+.
T Consensus 213 ~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~ 285 (621)
T 2vgl_A 213 TLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLE 285 (621)
T ss_dssp HHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHH
T ss_pred HHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHH
Confidence 9997555421 12333333 343221 577888888888888653 3344333322 233
Q ss_pred HHHhhh---------ccCC--hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHH
Q 005088 295 PVIGLL---------SSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 295 ~L~~ll---------~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~ 363 (715)
.++..+ ++.+ ..+..+++.++..+. ..+... ..++..|..++.++++.+|..++.+|..++..
T Consensus 286 ~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 286 TILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASS 359 (621)
T ss_dssp HHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence 333222 1112 377888888888874 222211 13467888899889999999999999998765
Q ss_pred H-HHHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHH
Q 005088 364 I-TAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 441 (715)
Q Consensus 364 ~-~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~ 441 (715)
. ....+ ......++..+. +++..++..++.+|..++.. .|...
T Consensus 360 ~~~~~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~--------------------------------- 404 (621)
T 2vgl_A 360 EFSHEAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQ--------------------------------- 404 (621)
T ss_dssp TTTHHHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHH---------------------------------
T ss_pred cCcHHHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHH---------------------------------
Confidence 4 11222 245677888888 99999999999999999743 22222
Q ss_pred HHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 442 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 442 ~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
++..|...+.+.+.+.+..++.+++.++...... ..-.+..|.+++......+...+...+.++..+.
T Consensus 405 -----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~----~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 405 -----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVD----YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp -----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 4556778888888999999999999987432111 1234677888887766667777777777776653
No 87
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.02 E-value=4.4e-08 Score=107.68 Aligned_cols=399 Identities=15% Similarity=0.132 Sum_probs=246.2
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhh--cCCCCcccccCCCccchHHHhhHHHH
Q 005088 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL--QAPPTSEADRNLKPFEHEVEKGSAFA 139 (715)
Q Consensus 62 lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL--~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (715)
.+..++..+.++ ++.++-.|+++++++.. ++... ..++.+.++| .+.++ -||..|+-+
T Consensus 112 ~iN~l~kDl~~~--n~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~------------~VRK~A~~a 171 (621)
T 2vgl_A 112 INNAIKNDLASR--NPTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMD------------SVKQSAALC 171 (621)
T ss_dssp HHHHHHHHHHSC--CHHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCH------------HHHHHHHHH
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCH------------HHHHHHHHH
Confidence 344455444433 67788899999999854 44333 2568888898 66666 999999999
Q ss_pred HHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHH----
Q 005088 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE---- 214 (715)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~---- 214 (715)
+.++. .+|+... ..+.++.+.++|.+.+. .++..|+.++..++..++..- ...++.++.
T Consensus 172 l~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~--------~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ 235 (621)
T 2vgl_A 172 LLRLYRTSPDLVP---MGDWTSRVVHLLNDQHL--------GVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSR 235 (621)
T ss_dssp HHHHHHHCGGGCC---CCSCHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHH
T ss_pred HHHHHHhChhhcC---chhHHHHHHHHhCCCCc--------cHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHH
Confidence 99999 6666432 14789999999976654 899999999999997665421 123344443
Q ss_pred hhccC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhc---------CCC--HHHHHHH
Q 005088 215 LLEFT-------------DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR---------SED--SAIHYEA 269 (715)
Q Consensus 215 ll~~~-------------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll~---------~~~--~~v~~~a 269 (715)
++..+ ++-.+...+..|..++.. ++.....+.+ .+..++..+. +.+ ..|...+
T Consensus 236 ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 236 IVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp HHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 33221 577888888888888853 3444443332 2333333221 112 3888999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC-CCCHH
Q 005088 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQ 348 (715)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~ 348 (715)
+.++..+. .+++... .++..|..++.+.+++++..++.++..++...+.. . .+ ......++..|. +++..
T Consensus 314 ~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~ 384 (621)
T 2vgl_A 314 ISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTERDVS 384 (621)
T ss_dssp HHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCCCHH
T ss_pred HHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCCCHh
Confidence 99999985 3333322 24667888888888999999999999998654321 1 22 345678888898 89999
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC-CchhhHHHhhccccccccchhhhh
Q 005088 349 LREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ 426 (715)
Q Consensus 349 v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~ 426 (715)
++..++..|..++... -. .++..|...+.+.+..++..++.+++.++.. ++.....++ .|.+......
T Consensus 385 Ir~~aL~lL~~l~~~~Nv~-----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~-----~Ll~ll~~~~ 454 (621)
T 2vgl_A 385 VRQRAVDLLYAMCDRSNAQ-----QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVD-----TILNLIRIAG 454 (621)
T ss_dssp HHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHH-----HHHHHHHHHG
T ss_pred HHHHHHHHHHHHcChhhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhhc
Confidence 9999999999998655 22 2345677777788899999999999998732 222211111 1111100000
Q ss_pred --hhhhHH---HHHHHHHHHHHhhhhHHHHHHHHhhhh--hhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCC
Q 005088 427 --ATKDCV---AKTLKRLEEKIHGRVLNHLLYLMRVAE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 499 (715)
Q Consensus 427 --~~~~~~---~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~ 499 (715)
.....+ ...+... .......+..|++.+.++. ..+...++++|+..+..-.+...+.-...+..+..-+...
T Consensus 455 ~~v~~ev~~~l~~ii~~~-~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~ 533 (621)
T 2vgl_A 455 DYVSEEVWYRVIQIVINR-DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLC 533 (621)
T ss_dssp GGSCSHHHHHHHHHHGGG-CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccC
Confidence 000111 0010000 0012234556667776653 2455566688877743211110000002244555555667
Q ss_pred CcchhhhhHHHHHHhhhhc
Q 005088 500 NPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 500 ~~~~~~~aa~~L~~L~~~~ 518 (715)
++.+|..+..++.++....
T Consensus 534 ~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 534 SVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHC
Confidence 8889999999998887653
No 88
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.00 E-value=1.5e-09 Score=93.28 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=82.6
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCC------------------
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 610 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------ 610 (715)
+.+.. +|..|.+|+.+ +..|++|+.||.+.- ...|++++++..+++.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 55665 68999999998 789999999998631 4579999999999999999998765
Q ss_pred --------cccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCChhhHHH
Q 005088 611 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 652 (715)
Q Consensus 611 --------~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i~~~~~~~ 652 (715)
++++.+++.+|+.||+++++.+|.+.|..++...+...++-+
T Consensus 79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee 128 (141)
T 1fs1_B 79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 128 (141)
T ss_dssp --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH
Confidence 567888999999999999999999999999888765554433
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.94 E-value=4.5e-09 Score=117.18 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=164.1
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHH-HHccccCCCcchhhhHHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRR 184 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~~~~~~~~~ 184 (715)
+.++++.|+++++ +.|..|+++|++|+.++..+..+...+++..++. +|.+.+. +++..
T Consensus 36 i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~ 95 (684)
T 4gmo_A 36 ILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAA 95 (684)
T ss_dssp THHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHH
T ss_pred HHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHH
Confidence 4556778998888 8999999999999999999999999999987665 5666554 99999
Q ss_pred HHHHHHHHhcc-CccchhHHHhcCCcHHHHHhhccCC---------------------HHHHHHHHHHHHHHhcCChhhH
Q 005088 185 AADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDENK 242 (715)
Q Consensus 185 a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~L~~~~~~~~ 242 (715)
|+++|+||+.+ .+.....+...|++++|..+++... ..+...++.+|++|+..+....
T Consensus 96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~ 175 (684)
T 4gmo_A 96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH 175 (684)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999964 4677778888999999998885311 2345678899999998888888
Q ss_pred HHHHhCCChHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhh--ccCChHHHHHHHHHHHH
Q 005088 243 NQIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQ 317 (715)
Q Consensus 243 ~~~~~~g~l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~~~~a~~~L~~ 317 (715)
..+...++++.|+.+|.+. ..+++..++.+|..++..++.....+.+.+....+..++ ...+...+..++++|.|
T Consensus 176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N 255 (684)
T 4gmo_A 176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN 255 (684)
T ss_dssp HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 8888889999999988542 568999999999999999999888888877544333332 23334457788899999
Q ss_pred HhcC-----CcchhHHHhhcCChHHHHHHhC
Q 005088 318 FAAT-----DSDCKVHIVQRGAVRPLIEMLQ 343 (715)
Q Consensus 318 l~~~-----~~~~~~~~~~~~~l~~L~~~L~ 343 (715)
+... ...........-+++.+...+.
T Consensus 256 i~~~~~~~d~s~~~~~~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 256 VFTSLQWMDHSPGKDGACDAILIPTLTRALE 286 (684)
T ss_dssp HHHHHTCBTTBCCGGGCSGGGTHHHHHHHHT
T ss_pred HhhhhhhhhcchhhHHHHHHHHHHhhhhhHh
Confidence 7531 1112222333445566666553
No 90
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.85 E-value=7.7e-10 Score=97.46 Aligned_cols=108 Identities=15% Similarity=0.286 Sum_probs=62.0
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCC------------------
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 610 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------ 610 (715)
|++.. +|..|.+|+.+ +..|++|+.||.+.. ....|++++++..+++.+++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 45554 68999999998 779999999998642 33479999999999999999999875
Q ss_pred ---------cccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcC
Q 005088 611 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH 661 (715)
Q Consensus 611 ---------~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i---~~~~~~~~~~~a~~~~ 661 (715)
+.++..++.+|+.||++|++..|.++|..++...+ +++.+..++.+...+.
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t 144 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 34677889999999999999999999999999888 6677677666655554
No 91
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=2.7e-06 Score=94.50 Aligned_cols=306 Identities=15% Similarity=0.123 Sum_probs=198.1
Q ss_pred hHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 130 ~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+.++..|+.+|+.+. +... .++..|...|.+.+..........++..|+..|+-...++.. ..+
T Consensus 409 ~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev 473 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEV 473 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHH
T ss_pred HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHH
Confidence 388999999999998 4322 136777788876541101000126777788888887643321 124
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (715)
++.|..++.+++..++..|+.+|+.+-.+... . .++..|+..+ .+.++.+++.++..|+.+..+.++.
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---- 542 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---- 542 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG----
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH----
Confidence 56788888877777777888888866432211 1 1234444443 4568899999999999987776653
Q ss_pred HHcCChHHHHhhhc-cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHHH
Q 005088 288 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVIT 365 (715)
Q Consensus 288 ~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~~ 365 (715)
++.+++.|. +.++-+|..++.+++--..+..+. ..++.|+..+ .+.+..+|+.|+.+|+.+....
T Consensus 543 -----~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~- 609 (963)
T 4ady_A 543 -----ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD- 609 (963)
T ss_dssp -----GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-
T ss_pred -----HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-
Confidence 555666665 467888888888887655444332 1256566555 4567889999999998775432
Q ss_pred HHHHhcCChHHHHHhh-ccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHh
Q 005088 366 AGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 444 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (715)
...++.++.++ ++.++.+|..|+.+|+.++....+.
T Consensus 610 -----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------------------------------------- 646 (963)
T 4ady_A 610 -----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------------------------------------- 646 (963)
T ss_dssp -----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------------------------------------
T ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------------------------------------
Confidence 34667777755 7789999999999999996443221
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcC--CCcchhhhhHHHH--HHhhhhc
Q 005088 445 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVAL--FKLANKA 518 (715)
Q Consensus 445 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~aa~~L--~~L~~~~ 518 (715)
.++..|.+++++++..|+..|+.+|+.+.....+...-.-...+..|.....+ .++..+..+..+. ..+....
T Consensus 647 -~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 647 -SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred -HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 14556778889999999999999999996654433110012345556666654 3445666555444 3444433
No 92
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.65 E-value=5.1e-06 Score=84.56 Aligned_cols=343 Identities=12% Similarity=0.133 Sum_probs=210.1
Q ss_pred CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCc---cchhHHHhcCCc-HHHHH-hhccCCHHHHHHHHHHH
Q 005088 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---SIKTRVRMEGGI-PPLVE-LLEFTDTKVQRAAAGAL 231 (715)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~g~i-~~L~~-ll~~~~~~v~~~a~~~L 231 (715)
.++..++.+|...... ++..+.+..+..+...++ .....+.+.... ..+.. ++..+++-....++.++
T Consensus 77 ~~~~~~l~lL~~~~~~-------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNE-------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp TTHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcChH-------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 4567788888876553 888888888888887665 333333333222 12222 33334445556666666
Q ss_pred HHHhcCChhhHHHHHhCCChH--HHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHcC--ChHHHHhhhcc----
Q 005088 232 RTLAFKNDENKNQIVECNALP--TLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSS---- 302 (715)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~l~--~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g--~l~~L~~ll~~---- 302 (715)
..++...+...+.+- ..+. .++..+... +.+.+..++.+|..|... ++.+..+.+.+ .++.++.++..
T Consensus 150 ~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 666532222111110 1122 344555553 455566788888888654 66667666543 35666543331
Q ss_pred -----------C--ChHHHHHHHHHHHHHhcCCcchhHHHhhcCCh--HHHHHHhCC-CCHHHHHHHHHHHHHhHHHH--
Q 005088 303 -----------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQS-PDVQLREMSAFALGRLAQVI-- 364 (715)
Q Consensus 303 -----------~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~-- 364 (715)
. ...+..+++.++|-++. +++....+...++. +.|+..++. ....+.+-++.+|.|+....
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 25668899999999975 44455555555533 566666755 67889999999999998753
Q ss_pred ------HHHHHhcCChHHHHHhhcc---CChhHHHHHHHHHHhc-------cCCCchhhHHHhhccccccccchhhhhhh
Q 005088 365 ------TAGIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGL-------ADNEDNVADFIRVGGVQKLQDGEFIVQAT 428 (715)
Q Consensus 365 ------~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l-------~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 428 (715)
...+...+++ .+++.|.. .++++....-.....| +.-++....+. +|.++- ...+..
T Consensus 306 ~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~-sG~L~W-----SP~H~s 378 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD-SKLLCW-----SPPHVD 378 (480)
T ss_dssp THHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-HTCCCC-----CGGGGC
T ss_pred hhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-cCCccc-----CCCccc
Confidence 2223334454 45555533 3555544433333332 22223333322 243221 123344
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhh----------hhhhHHHHHHHHHHhhcC-CCccchhhhcCCcHHHHHHHhc
Q 005088 429 KDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLG 497 (715)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~ 497 (715)
......+...+.. -...++..|+++|.+ .++.+..-||.=|+.++. .|.++.++.+.|+...+.+++.
T Consensus 379 e~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 379 NGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN 457 (480)
T ss_dssp HHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS
T ss_pred hhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc
Confidence 4445555544433 345678999999984 478888899999999976 4668888888899999999999
Q ss_pred CCCcchhhhhHHHHHHhhhhc
Q 005088 498 STNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 498 ~~~~~~~~~aa~~L~~L~~~~ 518 (715)
++|++||..|..|+..+..+.
T Consensus 458 h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988765
No 93
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.62 E-value=8.9e-06 Score=69.90 Aligned_cols=215 Identities=19% Similarity=0.185 Sum_probs=166.2
Q ss_pred cCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHH
Q 005088 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (715)
Q Consensus 103 ~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~ 181 (715)
...+..++.+|.+.-- .|+..|+..+..++ .-|+...-+ +..|+.+++.+... .+
T Consensus 31 ~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaI-------pl 86 (253)
T 2db0_A 31 ESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAI-------PL 86 (253)
T ss_dssp HHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSH-------HH
T ss_pred HHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccC-------ch
Confidence 4467788888876543 89999999999999 777765443 45677777776553 66
Q ss_pred HHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC
Q 005088 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (715)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~ 261 (715)
.......++.++...|+.- .+.+|.+..-..-+++.++.+..++|..++..+|..... ++.-+..++.++
T Consensus 87 tqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltsk 156 (253)
T 2db0_A 87 TQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSK 156 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCS
T ss_pred HHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCC
Confidence 5677888999987666532 256677777777789999999999999999888776543 456788899999
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHH
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 341 (715)
+..-+..++..++.+....... -..++|.|..+|.+.+.-+|..+..+|.+++..++..+..+ ..-+.-
T Consensus 157 d~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e 225 (253)
T 2db0_A 157 NREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEE 225 (253)
T ss_dssp SHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHH
Confidence 9888999999999885443322 24579999999999999999999999999998777654432 345566
Q ss_pred hCCCCHHHHHHHHHHHHHhHH
Q 005088 342 LQSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~ 362 (715)
+.+.+..++.....+|+.++.
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 778888898888888887763
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.62 E-value=9.8e-07 Score=79.41 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=160.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHH
Q 005088 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (715)
Q Consensus 249 g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (715)
+.+..|..++.+.|+.++..++.+|..+...-+.......-..+++.++.++.+.+..+...|+.++..+..+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35778899999999999999999999997664444444455668999999999999999999999999998766544333
Q ss_pred HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhH
Q 005088 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 408 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (715)
+. .+...|.+++.++++-++..++..++.+--.. ...+++..+.+++.|++..++..+..++.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~----~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~-- 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE----DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS-- 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC----CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC--
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc----chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH--
Confidence 33 24678899999999999999999999882111 11234567888889999999999999999997543211
Q ss_pred HHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcC-C
Q 005088 409 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG-G 487 (715)
Q Consensus 409 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~ 487 (715)
+.++ +++..+-.++++.|+.++..|+.++-.+...+--...+-+- +
T Consensus 185 ----~i~~-----------------------------~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 185 ----GHLT-----------------------------LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp ----CCGG-----------------------------GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred ----HHHH-----------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 1111 24445668899999999999999999998775443333222 2
Q ss_pred cHHHHHHHh-cCCCcchhhhhHH
Q 005088 488 GLELLLGLL-GSTNPKQQLDGAV 509 (715)
Q Consensus 488 ~i~~L~~ll-~~~~~~~~~~aa~ 509 (715)
.....-.+. ..+.|.++..|-.
T Consensus 232 ~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 232 ISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp HHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhHHHHHHH
Confidence 223333444 3466666666543
No 95
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.59 E-value=3.8e-07 Score=87.77 Aligned_cols=186 Identities=14% Similarity=0.075 Sum_probs=140.9
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC-CCCHHHHHHHHHHHHHhHHHHHHHH--H
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITAGI--A 369 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~l--~ 369 (715)
.+.+.+.+.+.++..|..++..|..++.+.+.....-. ..+++.|...+. +.+..++..|+.+++.|+...+..+ .
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34577788889999999999999999875332211111 245778888884 8999999999999999997663222 2
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHH
Q 005088 370 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 449 (715)
Q Consensus 370 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (715)
-..+++.++..+.+++..+|..+..+|..++.... + ..+++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----------~-----------------------------~~ll~ 136 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----------L-----------------------------EAQQE 136 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----------H-----------------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----------H-----------------------------HHHHH
Confidence 23578889999999999999999999999875321 0 12567
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhcCCC--ccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 450 HLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 450 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
.+...+.+.++.++..++..|..+.... +......-...++.|..++.+.++++|..|..++..++...
T Consensus 137 ~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 137 SIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 7888888889999999999999974442 21111122367899999999999999999999999988754
No 96
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.57 E-value=1.7e-05 Score=68.14 Aligned_cols=184 Identities=18% Similarity=0.197 Sum_probs=145.6
Q ss_pred HhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 005088 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN 282 (715)
Q Consensus 204 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~ 282 (715)
.+..++..++.+|.++-+.++.+|+.++.+++..-++...-+ +..|+.+++ ++.-.......++++.++.-+|+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 344567889999988889999999999999998777665544 344555544 55667777888999999887877
Q ss_pred HHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHH
Q 005088 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~ 362 (715)
.... .+|.+..-..-+++.++.....+|..++..+|.... +++.-+..++.+++..-+..|+..+..+..
T Consensus 104 ~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 6444 478888888888999999999999999987776544 345778889999898888888888888876
Q ss_pred HHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCc
Q 005088 363 VITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 404 (715)
Q Consensus 363 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 404 (715)
+.-+++ .-.+|.|..+|++.+.-||..|..+|.+++...+
T Consensus 174 n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 174 NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 653332 3478899999999999999999999999986543
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.50 E-value=5.7e-06 Score=82.51 Aligned_cols=278 Identities=13% Similarity=0.013 Sum_probs=155.3
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (715)
...+++++.+.+. ++++..--.+.+++...++ .+. ++..|.+=++++++-++..|+++|+++..
T Consensus 70 f~~v~kl~~s~d~--------~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 70 FFAMTKLFQSNDP--------TLRRMCYLTIKEMSCIAED---VII---VTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp HHHHHGGGGCCCH--------HHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 4456667776654 7888888888887754222 222 45778888889999999999999999984
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHH
Q 005088 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (715)
Q Consensus 239 ~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l 318 (715)
++..+. +.+.+.+.+.+.++.|+..|+-+...|...+++.. .++++.+.+++.+.++-+...|..++..+
T Consensus 134 ~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 134 STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 333222 34557778889999999999999999987777643 36899999999999999999999999999
Q ss_pred hcCCcchhHHHhhcCChHHHHHHhCCC---CHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHH
Q 005088 319 AATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 395 (715)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~L~~~L~~~---~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 395 (715)
...+.. .+..|+..+... ++..+-..+..+..++..+ ..-.....++.+..+|++.++.|...|+.+
T Consensus 204 ~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 204 RKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp HTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHH
T ss_pred HhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 754321 234444444331 4544444444443333221 011234566777788889999999999999
Q ss_pred HHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 005088 396 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 475 (715)
Q Consensus 396 L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 475 (715)
+..+...+.. ... .....|..++.++++++|..|++.|..+..
T Consensus 274 I~~l~~~~~~---~~~----------------------------------~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 274 IVNLPGCSAK---ELA----------------------------------PAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp HTC------------------------------------------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HHhccCCCHH---HHH----------------------------------HHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 9998543211 110 022345567888999999999999999876
Q ss_pred CCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHH
Q 005088 476 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 513 (715)
Q Consensus 476 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~ 513 (715)
..+..-. ..-.-+.+++.++|..+...|...|.+
T Consensus 317 ~~P~~v~----~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 317 KHPSAVT----ACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp --------------------------------------
T ss_pred HCcHHHH----HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 5432211 234457888999999998888776643
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.49 E-value=4.7e-06 Score=75.05 Aligned_cols=187 Identities=17% Similarity=0.126 Sum_probs=148.5
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (715)
.+..|..+|.+.++ .++.+++.+|..+...-+.......-..+++.++.++++.+..+...|+.+|..|..+
T Consensus 34 ~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 57888899977765 9999999999999975444433444457889999999999999999999999999987
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHH
Q 005088 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (715)
Q Consensus 238 ~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (715)
.|-....+.. +...|..++.++++-++..++..++.+...++. .+++..+..++.+.+.+++..+..++.+
T Consensus 106 vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 106 VPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp CCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7766666554 578889999999999999999999999332221 2246778888988899999999999999
Q ss_pred HhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 318 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
+++.+.+.. +. .+++.-+-.+|++.|+.+++.|+.++-.+....
T Consensus 177 ia~~S~D~~--i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 177 MLNSSADSG--HL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HGGGCSSCC--CG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hhcccCCHH--HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 986443210 11 345677888999999999999999999887665
No 99
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.48 E-value=4.5e-07 Score=72.11 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=67.1
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCC--------------cccC
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDVT 614 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~--------------~~~~ 614 (715)
+.+.. +|..|.+++.+ +..|++++.|+.+++ +.....|++++++..+++.+++|+|... .+++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 55555 78999999997 779999999998866 5555689999999999999999998643 3477
Q ss_pred HHHHHHHHHHHHHhCh
Q 005088 615 LDIAQDLLRAADQYLL 630 (715)
Q Consensus 615 ~~~~~~ll~~A~~~~~ 630 (715)
.+++.+|+.||+++++
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999875
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.44 E-value=3.4e-06 Score=84.09 Aligned_cols=244 Identities=12% Similarity=0.040 Sum_probs=153.8
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (715)
.+.+++++.+.+. .++....-.+.+++..++-. + =++..+.+=+.++++ -++..|
T Consensus 70 f~~v~kl~~s~d~------------~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N~--------~iR~lA 124 (355)
T 3tjz_B 70 FFAMTKLFQSNDP------------TLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKED--------SYRGPA 124 (355)
T ss_dssp HHHHHGGGGCCCH------------HHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSCH--------HHHHHH
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCcH--------hHHHHH
Confidence 4567788888877 88888888888888443221 1 135566666666554 888899
Q ss_pred HHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHH
Q 005088 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (715)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v 265 (715)
+.+|+++.. ++.-+ ...+.+.+.+.+.++.|+..|+-+...|...+++.. + ++++.+-.++.+.++.+
T Consensus 125 LRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V 192 (355)
T 3tjz_B 125 VRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMV 192 (355)
T ss_dssp HHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHH
T ss_pred HHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccH
Confidence 999999963 32222 344678888899999999999999999997666632 2 68899999999999999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC---ChHHHHHHHHHHHHHhcCC-cchhHHHhhcCChHHHHHH
Q 005088 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEM 341 (715)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~ 341 (715)
+.+|+.+|..+...+... +..++..+... ++-.+...+..+..++..+ +. ....+++.+..+
T Consensus 193 ~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~ 258 (355)
T 3tjz_B 193 QYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESC 258 (355)
T ss_dssp HHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CC
T ss_pred HHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHH
Confidence 999999999997654321 22233333332 2333333344443443322 11 224566788888
Q ss_pred hCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC
Q 005088 342 LQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 402 (715)
|++.++.|.-.|+.++..+.......+ ..++..+..++.++++.+|..|+..|..+...
T Consensus 259 L~~~~~aVvyEa~k~I~~l~~~~~~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 259 LRNKHEMVVYEAASAIVNLPGCSAKEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp CCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred HcCCChHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 899999999999999999865332211 23456677778899999999999999888654
No 101
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.43 E-value=9.3e-05 Score=82.35 Aligned_cols=276 Identities=17% Similarity=0.133 Sum_probs=179.4
Q ss_pred HHHhhccccch-HHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 63 VNVLNTTFSWL-EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 63 v~~L~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
+..|...+... +.++.++-.|+.+|+-+..+... .++..|.+.|.+.+.... ......++..|+..|+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~----~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSG----DEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCS----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCcccccc----ccccHHHHHHHHHHHH
Confidence 44444444311 23556777888888877664321 146777787866541000 0001268888999999
Q ss_pred hhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhh-ccC
Q 005088 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFT 219 (715)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~ 219 (715)
.+. ++... .++..|..++.+.+. .+.+.++.+|+.+-.+..+. .++..|+..+ .+.
T Consensus 463 la~~GS~~e-------ev~e~L~~~L~dd~~--------~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~ 520 (963)
T 4ady_A 463 LAAMGSANI-------EVYEALKEVLYNDSA--------TSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQ 520 (963)
T ss_dssp HHSTTCCCH-------HHHHHHHHHHHTCCH--------HHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCS
T ss_pred HHhcCCCCH-------HHHHHHHHHHhcCCH--------HHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccC
Confidence 986 33111 136677888876543 55567777888764322221 1234555544 455
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh
Q 005088 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (715)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ 298 (715)
+..+++.++..|+.+..++++ .++.+++.|. +.++-+|..++.+++.-..+.... . .++.|++
T Consensus 521 ~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~------aIq~LL~ 584 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S------AVKRLLH 584 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H------HHHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H------HHHHHHH
Confidence 788999999999988876554 4566666665 468899999888887655443321 1 2444444
Q ss_pred hh-ccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChH
Q 005088 299 LL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLV 375 (715)
Q Consensus 299 ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~ 375 (715)
.+ .+.+..+|+.|+.+|+.+..++++ .++.++..| .+.++.+|..++.+|+.++... .. .++.
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-----~aid 650 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-----SAID 650 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-----HHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-----HHHH
Confidence 44 455688999999999998766542 355666644 5689999999999999886443 11 2456
Q ss_pred HHHHhhccCChhHHHHHHHHHHhccC
Q 005088 376 PLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 376 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
.|..++++.+..|+..|+.+|+.+..
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 78888899999999999999999954
No 102
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.40 E-value=4.6e-07 Score=71.68 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=62.7
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCC-----------cccCH
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 615 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~ 615 (715)
+.+.. +|..|.+++.+ +..|++++.|+.. .+.|.....|++++++..+++.+++|+|... .+++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 44554 78999999997 7799999999985 3356666789999999999999999997643 35778
Q ss_pred HHHHHHHHHHHHhCh
Q 005088 616 DIAQDLLRAADQYLL 630 (715)
Q Consensus 616 ~~~~~ll~~A~~~~~ 630 (715)
+++.+|+.||+++++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999875
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.39 E-value=6e-08 Score=83.22 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=93.1
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHh
Q 005088 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 411 (715)
Q Consensus 332 ~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 411 (715)
...++.+..+|.++++.+|..|+++|+++. ...++.|+.+++++++.+|..|+++|+++...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~---------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~--------- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG---------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDE--------- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS---------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH---------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC---------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH---------
Confidence 456788999999999999999999988763 22468899999999999999999999997521
Q ss_pred hccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhhhcCCcHHH
Q 005088 412 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 491 (715)
Q Consensus 412 ~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~ 491 (715)
..++.|+.++.++++.||..|+.+|+++. ....++.
T Consensus 73 ----------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~ 108 (131)
T 1te4_A 73 ----------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAA 108 (131)
T ss_dssp ----------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHH
Confidence 13567888889999999999999999985 2356889
Q ss_pred HHHHhcCCCcchhhhhHHHHHHh
Q 005088 492 LLGLLGSTNPKQQLDGAVALFKL 514 (715)
Q Consensus 492 L~~ll~~~~~~~~~~aa~~L~~L 514 (715)
|..++.++++.++..|+.+|.++
T Consensus 109 L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 109 MEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHhCCCHHHHHHHHHHHHhC
Confidence 99999999999999999988653
No 104
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=2.7e-06 Score=81.78 Aligned_cols=185 Identities=15% Similarity=0.240 Sum_probs=134.9
Q ss_pred HHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCh
Q 005088 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKND 239 (715)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~ 239 (715)
.+.+.+.+.+ |..+..++..|..++...+.....-. ...++.|...+. +.+..++..|+.++..|+..-.
T Consensus 19 ~l~~~l~s~~--------w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEKK--------WTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp THHHHHTCSS--------HHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhccCC--------HHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 3556665433 58999999999999875333211001 134667788884 8999999999999999995311
Q ss_pred h-hHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHH
Q 005088 240 E-NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (715)
Q Consensus 240 ~-~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l 318 (715)
. ....+ ..+++.++..+.+.+..+|..+..+|..+....+ . . .+++.+...+.+.++.++..++..|..+
T Consensus 90 ~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 90 KRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp GGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1 11111 2378999999999999999999999999976432 1 1 2577888899999999999999999996
Q ss_pred hcCC-cch-hHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 319 AATD-SDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 319 ~~~~-~~~-~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
.... +.. ..... ..+++.|..++.+.++.+|..|..+++.++..-
T Consensus 161 l~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 161 LTRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HTTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 5433 321 12222 357899999999999999999999999987654
No 105
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.31 E-value=2.9e-06 Score=74.98 Aligned_cols=110 Identities=18% Similarity=0.289 Sum_probs=81.5
Q ss_pred EEEEe-cCeeecchHHHHhhccHHHHHhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCC--------------
Q 005088 550 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS-------------- 610 (715)
Q Consensus 550 ~~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-------------- 610 (715)
|.+.. +|..|.+++.+ +..|.+++.|+..... +.....|++++++..+++.+++|+|...
T Consensus 9 i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~ 87 (169)
T 3v7d_A 9 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK 87 (169)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccc
Confidence 55554 58999999998 5689999999975322 2233689999999999999999997543
Q ss_pred -----------cccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC---ChhhHHHHHHHHHHc
Q 005088 611 -----------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAF 660 (715)
Q Consensus 611 -----------~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i---~~~~~~~~~~~a~~~ 660 (715)
+.++..++.+|+.||++|++..|.++|...+...+ +++-...++.+...+
T Consensus 88 ~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~ 151 (169)
T 3v7d_A 88 SAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 151 (169)
T ss_dssp CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCC
T ss_pred cccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 23566889999999999999999999988875544 555555555544333
No 106
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.7e-06 Score=81.63 Aligned_cols=192 Identities=12% Similarity=0.092 Sum_probs=138.7
Q ss_pred HHHhhhccCChHHHHHHHHHHHH-HhcCCcchhHHHhh-cCChHHHHHHh-CCCCHHHHHHHHHHHHHhHHHHH-HHHH-
Q 005088 295 PVIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQVIT-AGIA- 369 (715)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~l~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~~-~~l~- 369 (715)
-+...+.+.++.-|.+|+..|.. ++.+.+.....-.+ ..++..|...+ ++.+..++..|+.+|+.|+..-+ ..+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566788899999999999999 87543332100011 23567888888 78899999999999999996444 3322
Q ss_pred --hcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhh
Q 005088 370 --HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 447 (715)
Q Consensus 370 --~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (715)
...+++.++..+.++.+.|+..+..++..++.+.+.. ...+.+ ..+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~---~~~~~l-----------------------------~~l 147 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL---ASSGRN-----------------------------EDM 147 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT---CTTCTT-----------------------------HHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc---ccCCcH-----------------------------HHH
Confidence 1236788889999999999999999998886432100 000000 125
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcCCCcc---chhhhc-CCcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 448 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ---RTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 448 l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~---~~~~~~-~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
++.|+..|.+.++.++..++.+|..++..... ...-.- ...+|.|..++.+.++++|..|..++..++...
T Consensus 148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 77888889999999999999999999654332 111122 578999999999999999999999999888643
No 107
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.28 E-value=9.1e-08 Score=82.07 Aligned_cols=121 Identities=22% Similarity=0.221 Sum_probs=91.9
Q ss_pred cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 206 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
...++.++.+|+++++.++..|+++|..+.. ..++.|+.++.++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 4567889999999999999999988887652 126889999999999999999999999842 1
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l 360 (715)
..++.|+..+.+.++.++..++++|+++.. ...++.|+.+++++++.++..|+.+|.++
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 147888899999999999999999999841 23478899999989999999999988653
No 108
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.7e-06 Score=70.17 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=50.1
Q ss_pred hcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCchhhhchhhcHHHHH
Q 005088 643 QDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 698 (715)
Q Consensus 643 ~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 698 (715)
+.++++||+.++.+|+.|+++.|.+.|..|+.+||.++.++++|.+|+.+.+.+++
T Consensus 6 ~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL 61 (105)
T 2eqx_A 6 SGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDII 61 (105)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999665544443
No 109
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.16 E-value=5.3e-06 Score=79.54 Aligned_cols=190 Identities=7% Similarity=0.017 Sum_probs=137.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHH-HhcCChhhHHHHHh-CCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCh--hHHH
Q 005088 211 PLVELLEFTDTKVQRAAAGALRT-LAFKNDENKNQIVE-CNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSP--NIKK 285 (715)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~-L~~~~~~~~~~~~~-~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~--~~~~ 285 (715)
.+...+.+.++.-|..|+..|.. ++.+.+.......+ ..++..|.+.+ ++.+..++..|+.+|+.|+.+-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 46667788999999999999999 87543321100001 13466777888 68899999999999999975321 2110
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~ 365 (715)
. ....+++.++..+.+....++..+..++..++...+.......-..+++.|...|++.++.+|..++.+|..++....
T Consensus 100 ~-y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 D-YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp H-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 112368899999999889999998888888875332111110011357888889999999999999999999987762
Q ss_pred ---HHH--H-hcCChHHHHHhhccCChhHHHHHHHHHHhccC
Q 005088 366 ---AGI--A-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 366 ---~~l--~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 401 (715)
..+ . ....++.+.+++.+.++.||..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 332 1 25788999999999999999999999999863
No 110
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.12 E-value=1.2e-05 Score=65.08 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=75.0
Q ss_pred EEEEecCeeecchHHHHhhcc-HHHHHhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH-HHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLR 623 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~ 623 (715)
|.+.|+|..|...+..|.... .+|..||.+++. ....+.+-+ |-+|..|+.+|.|+.+|++.++.+ ....+++
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~ 86 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLE 86 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHH
Confidence 678899999999999999765 478999986521 123345555 679999999999999999986543 3478999
Q ss_pred HHHHhChhhHHHHHHHHHHh
Q 005088 624 AADQYLLEGLKRLCEYTIAQ 643 (715)
Q Consensus 624 ~A~~~~~~~L~~~~~~~l~~ 643 (715)
-|++|+++.|+..|++.|..
T Consensus 87 Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 87 EAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 99999999999999988754
No 111
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.01 E-value=1.3e-05 Score=65.08 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=62.2
Q ss_pred EEEE-ecCeeecchHHHHhhccHHHHHhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCC-----------cccCH
Q 005088 550 VTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 615 (715)
Q Consensus 550 ~~~~-~~~~~~~~h~~iL~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~ 615 (715)
+.+. .+|..|.+++.+ +..|..++.|+.. .+.|.....|++++++..+++.+++|+|... .+++.
T Consensus 19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 97 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 97 (112)
T ss_dssp EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCH
Confidence 5555 468999999995 5699999999984 3445555689999999999999999997532 35788
Q ss_pred HHHHHHHHHHHHhCh
Q 005088 616 DIAQDLLRAADQYLL 630 (715)
Q Consensus 616 ~~~~~ll~~A~~~~~ 630 (715)
+++++|+.||+++++
T Consensus 98 ~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 98 EIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999999875
No 112
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.96 E-value=0.00021 Score=72.85 Aligned_cols=234 Identities=18% Similarity=0.171 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcC--ChHHHHhhhcCC----CCccc-ccCCCccchHHHhhHHHHHHhhcCChhhHH
Q 005088 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAP----PTSEA-DRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~L~~lL~~~----~~~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (715)
.+.-++.+|..+...+++|..+.+.+ .+|.++.++... +.... ...+......++.+++-+++-|+.+++..+
T Consensus 184 ~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~ 263 (480)
T 1ho8_A 184 TCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFAN 263 (480)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHH
Confidence 35678999999999999999988653 467776554421 10000 000011124788999999999998888888
Q ss_pred HHHhcCCh--HHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccc-----hhHHHhcCCcHHHHHhhcc---CCH
Q 005088 152 LIVDNGAL--SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-----KTRVRMEGGIPPLVELLEF---TDT 221 (715)
Q Consensus 152 ~i~~~~~l--~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-----~~~~~~~g~i~~L~~ll~~---~~~ 221 (715)
.+...+.. +.|+.+++....+ .+.+.++.+|.|+....+.. .+.+...++ ..++..|.. +|+
T Consensus 264 ~l~~~~i~~~~~L~~i~k~s~KE-------KvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~De 335 (480)
T 1ho8_A 264 ELVQKYLSDFLDLLKLVKITIKE-------KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDE 335 (480)
T ss_dssp HHHTTSHHHHHHHHHHHHHCCSH-------HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSH
T ss_pred HHHhcchHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcH
Confidence 88776643 5667777776653 89999999999998654211 222322344 445555542 455
Q ss_pred HHHHHHHHHHH-------HHh--------------cCChhhHH-H--------HH--hCCChHHHHHhhcC---------
Q 005088 222 KVQRAAAGALR-------TLA--------------FKNDENKN-Q--------IV--ECNALPTLILMLRS--------- 260 (715)
Q Consensus 222 ~v~~~a~~~L~-------~L~--------------~~~~~~~~-~--------~~--~~g~l~~L~~ll~~--------- 260 (715)
++....-.... .++ ..+|..+. . +. +..++..|+++|.+
T Consensus 336 dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~ 415 (480)
T 1ho8_A 336 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 415 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccccc
Confidence 54432222111 111 11222211 1 11 12357889999973
Q ss_pred -CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhc
Q 005088 261 -EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (715)
Q Consensus 261 -~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 320 (715)
.|+.+..-||.=|+.++...|..+..+-+.|+=..++.++.+.+++++.+|+.++..+..
T Consensus 416 s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 416 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 367888899999999999999988887788999999999999999999999999988753
No 113
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.95 E-value=0.0013 Score=76.72 Aligned_cols=444 Identities=10% Similarity=0.027 Sum_probs=223.3
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHHhcCh-------hhHHHH--HhcCChHHHHhh-------hcCCCCccccc
Q 005088 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE-------EVVNWI--VEGGAVPALVKH-------LQAPPTSEADR 123 (715)
Q Consensus 60 ~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~--~~~g~v~~L~~l-------L~~~~~~~~~~ 123 (715)
|.+++.|.+.+++. ++..+..++.+|..++..- +.+..+ +-....+.++++ +.+.......
T Consensus 122 p~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~- 198 (960)
T 1wa5_C 122 PTLLSDLASRLSND--DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS- 198 (960)
T ss_dssp TTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHH-
T ss_pred hHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Confidence 34455555554443 3446778888888887631 112111 111224444443 3332220000
Q ss_pred CCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccC-------CCcchhhhHHHHHHHHHHHHHhc
Q 005088 124 NLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMD-------SNCSRAVNSVIRRAADAITNLAH 194 (715)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~-------~~~~~~~~~~~~~a~~~L~~L~~ 194 (715)
.....++...+++++.++. +.++.-..-+ ...++.+..++....+ +......+.++..++.+|..+..
T Consensus 199 --~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~ 275 (960)
T 1wa5_C 199 --LNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTT 275 (960)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 0000134445777777765 3333211100 1234556666654221 01112224677788888888875
Q ss_pred cCccchhHHHhcCCcHHHHHhhc-----cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-----Hhhc-----
Q 005088 195 ENSSIKTRVRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLR----- 259 (715)
Q Consensus 195 ~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~-----~ll~----- 259 (715)
..+..-.. .....++.....+. ..++.++..++..+..++. .+..+..+...+.++.++ ..+.
T Consensus 276 ~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d 353 (960)
T 1wa5_C 276 RYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNITEQIILPNVTLREED 353 (960)
T ss_dssp HCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGG
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHHHHHHhHHhcCCCHHH
Confidence 44331111 11233444455553 3457888889999988874 222221111012233333 2221
Q ss_pred ------------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc------cCChHHHHHHHHHH
Q 005088 260 ------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAALLL 315 (715)
Q Consensus 260 ------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~------~~~~~~~~~a~~~L 315 (715)
++....|..|..+|..++...++. + -..+++.+.+.+. +.++..+..|+.++
T Consensus 354 ~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~al 429 (960)
T 1wa5_C 354 VELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---V-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLF 429 (960)
T ss_dssp TTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---H-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---H-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 011246778888888887654321 1 1113444445554 45678888999999
Q ss_pred HHHhcCCcchhHHHh---h-cCChH----HHHHHhCCC---CHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccC
Q 005088 316 GQFAATDSDCKVHIV---Q-RGAVR----PLIEMLQSP---DVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSK 384 (715)
Q Consensus 316 ~~l~~~~~~~~~~~~---~-~~~l~----~L~~~L~~~---~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~ 384 (715)
+.++.+......... . ..+.+ .++..+.++ ++.+|..|+++++.++..-... .-...++.+++.|.++
T Consensus 430 gaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 430 TALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTD 508 (960)
T ss_dssp HHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCC
Confidence 999753211100000 0 01222 233445555 8999999999999997653111 1234567778888888
Q ss_pred ChhHHHHHHHHHHhccCCCc---------hhhHHHhhccccccccchhh-hhh---------hhhHHHHHHHHHHHHH--
Q 005088 385 NGSLQHNAAFALYGLADNED---------NVADFIRVGGVQKLQDGEFI-VQA---------TKDCVAKTLKRLEEKI-- 443 (715)
Q Consensus 385 ~~~v~~~a~~~L~~l~~~~~---------~~~~l~~~~~i~~L~~~~~~-~~~---------~~~~~~~~~~~~~~~~-- 443 (715)
+..|+..|+++|.+++...+ ....+. ..++.++..++. ... ...-+..++..+-...
T Consensus 509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~ 586 (960)
T 1wa5_C 509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED 586 (960)
T ss_dssp CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence 89999999999999876421 111111 112222221110 011 1112222222221111
Q ss_pred -----hhhhHHHHHHHHhh-----hhhhHHHHHHHHHHhhcCC-CccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHH
Q 005088 444 -----HGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 512 (715)
Q Consensus 444 -----~~~~l~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~ 512 (715)
...+++.|...+.. .++..+..++.+|+.++.. ......-......|.+..++.....+....+...+.
T Consensus 587 ~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~ 666 (960)
T 1wa5_C 587 SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIA 666 (960)
T ss_dssp TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 22344555555543 2556666678888887554 211222234466788888888877778777877777
Q ss_pred Hhhhhc
Q 005088 513 KLANKA 518 (715)
Q Consensus 513 ~L~~~~ 518 (715)
.+....
T Consensus 667 ~l~~~~ 672 (960)
T 1wa5_C 667 FVVEQS 672 (960)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 777654
No 114
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.94 E-value=0.0018 Score=75.49 Aligned_cols=379 Identities=10% Similarity=0.071 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCCh-------
Q 005088 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP------- 147 (715)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~------- 147 (715)
..++...+.+++.++.. |... .+.++.|++.+++++. ..+..++.+|..++..-
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~------------~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDDM------------VTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCT------------THHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHHHHhhcCh
Confidence 44667777777777652 2111 3568899999987665 67888999999988321
Q ss_pred hhHHHH--HhcCChHHHHHHHc-------cccCCC-cchhhhHHHHHHHHHHHHHhccCccchhHHHh--cCCcHHHHHh
Q 005088 148 EHQQLI--VDNGALSHLVNLLK-------RHMDSN-CSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVEL 215 (715)
Q Consensus 148 ~~~~~i--~~~~~l~~L~~lL~-------~~~~~~-~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~l 215 (715)
+.+..+ +-....+.++.++. ...... ..+...++...++.+++++....-. ..+.+ ...++.+..+
T Consensus 162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIP--EFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCC--HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHH
Confidence 222211 11122444444432 221100 0011124445577777776532111 11111 1223444555
Q ss_pred hccC------C---------HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhc-----CCCHHHHHHHHHHHHH
Q 005088 216 LEFT------D---------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-----SEDSAIHYEAVGVIGN 275 (715)
Q Consensus 216 l~~~------~---------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~-----~~~~~v~~~a~~~L~~ 275 (715)
+... + ..++..++.+|..+....+..-.... ..+++....++. ..++.++..++..+..
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 5321 1 25678888888888753332211111 134455555553 3467889999999988
Q ss_pred hhcCChhHHHHHHHcCChHHHH-----hhhc----c-------------------CChHHHHHHHHHHHHHhcCCcchhH
Q 005088 276 LVHSSPNIKKEVLAAGALQPVI-----GLLS----S-------------------CCSESQREAALLLGQFAATDSDCKV 327 (715)
Q Consensus 276 L~~~~~~~~~~~~~~g~l~~L~-----~ll~----~-------------------~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (715)
++.. +.....+...+.++.++ ..+. + .....|..|..+|..++...++.
T Consensus 319 ~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 319 VTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred HhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 8643 22111110001222222 2221 0 11245667777888777543311
Q ss_pred HHhhcCChHHHHHHhC------CCCHHHHHHHHHHHHHhHHHH--HHHHHhc-----CChHH----HHHhhccC---Chh
Q 005088 328 HIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQVI--TAGIAHN-----GGLVP----LLKLLDSK---NGS 387 (715)
Q Consensus 328 ~~~~~~~l~~L~~~L~------~~~~~v~~~a~~~L~~l~~~~--~~~l~~~-----~~l~~----L~~ll~~~---~~~ 387 (715)
+. ..+++.+...+. +.++..++.|+.+++.++... ...-... ...+. ++..+.++ ++.
T Consensus 396 -v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~ 473 (960)
T 1wa5_C 396 -VT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHII 473 (960)
T ss_dssp -HH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHH
T ss_pred -HH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCce
Confidence 11 113344444554 567899999999999998542 1100000 22222 33334556 899
Q ss_pred HHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHH
Q 005088 388 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 467 (715)
Q Consensus 388 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 467 (715)
+|..|+|+++.++..-. +. ....+++.++..|.++++.|+..|+
T Consensus 474 vr~~a~~~lg~~~~~~~--~~----------------------------------~l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 474 LRVDAIKYIYTFRNQLT--KA----------------------------------QLIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp HHHHHHHHHHHTGGGSC--HH----------------------------------HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ehHHHHHHHHHHHhhCC--HH----------------------------------HHHHHHHHHHHHhCCCChhHHHHHH
Confidence 99999999999875310 00 1123677788888888899999999
Q ss_pred HHHHhhcCCC--------c-cchhhh--cCCcHHHHHHHhcCCC-----cchhhhhHHHHHHhhh
Q 005088 468 LALAHLCSPD--------D-QRTIFI--DGGGLELLLGLLGSTN-----PKQQLDGAVALFKLAN 516 (715)
Q Consensus 468 ~aL~~l~~~~--------~-~~~~~~--~~~~i~~L~~ll~~~~-----~~~~~~aa~~L~~L~~ 516 (715)
.+|.+++... + .+..+. -...++.|..++.... ......+..+|..+..
T Consensus 518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~ 582 (960)
T 1wa5_C 518 ITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQ 582 (960)
T ss_dssp HHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHH
Confidence 9999997632 1 122221 1234556666666541 1133455566655544
No 115
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.92 E-value=0.00038 Score=67.34 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=120.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
..++..|.+++...++.++.-|..+-..+......++..+++..|++.....+...+..++.++.+|-.........+..
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 34566666777777888999999855568888999999999999999999999999999999999997654443233334
Q ss_pred cCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhc----------CChHHHHHHhC---CCCHHHHHHHHHH
Q 005088 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----------GAVRPLIEMLQ---SPDVQLREMSAFA 356 (715)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~~L~---~~~~~v~~~a~~~ 356 (715)
..++..+..++.+....+.+.|+.+|..++..++.+...+.+. ..+..|+.+|. +.+.+++.+|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5688889999998889999999999999987765444433321 23678999997 6789999998877
Q ss_pred HHHhHHH
Q 005088 357 LGRLAQV 363 (715)
Q Consensus 357 L~~l~~~ 363 (715)
|..+...
T Consensus 281 IN~lL~~ 287 (339)
T 3dad_A 281 INKTLAA 287 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7666554
No 116
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.67 E-value=0.0013 Score=63.63 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=128.5
Q ss_pred HHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q 005088 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (715)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 239 (715)
..+++-|.+.+. ..++.++.-|..+...+......|+..+|+..|+..+...+.+.+..++.+|.+|.. ..
T Consensus 121 ~~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 121 NAILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp HHHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cc
Confidence 344555555443 667788888888555677778889999999999999999999999999999999996 44
Q ss_pred hhHHHHH-hCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHc----------CChHHHHhhhc---cCCh
Q 005088 240 ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCS 305 (715)
Q Consensus 240 ~~~~~~~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------g~l~~L~~ll~---~~~~ 305 (715)
.....++ ...++..+..++.+.+..|.+.|+..|..++..++.....+.+. ..+..++.+|. ..+.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 4443333 55688899999998899999999999999987766444333321 24888999997 5678
Q ss_pred HHHHHHHHHHHHHhcCCc--chhHH----HhhcCChHHHHHHhCCC--CHHHHH
Q 005088 306 ESQREAALLLGQFAATDS--DCKVH----IVQRGAVRPLIEMLQSP--DVQLRE 351 (715)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~--~~~~~----~~~~~~l~~L~~~L~~~--~~~v~~ 351 (715)
+++..+...+-.+..+-+ +.... +-+.|+-..+...++.. ++++++
T Consensus 272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 888887766655544333 21222 22334445566666653 556554
No 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.66 E-value=0.0036 Score=70.77 Aligned_cols=245 Identities=20% Similarity=0.201 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhcC----hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHH
Q 005088 81 KRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIV 154 (715)
Q Consensus 81 ~~a~~~L~~l~~~----~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~ 154 (715)
+.|+..+..++.. +..--.++ +.+|.++..+.+... .|+..|..++..+. -++...
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~------------~v~~aa~~~~~~~~~~~~~~a~---- 131 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK------------EIQSVASETLISIVNAVNPVAI---- 131 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH------------HHHHHHHHHHHHHHHHSCGGGH----
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch------------HHHHHHHHHHHHHHHhCCHHHH----
Confidence 7888888888852 22222233 578999998887777 89999998988888 455443
Q ss_pred hcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
..++|.|+..|+.... |..+..|+.++..++...+ .+-...-...+|.+...+.+..++|...|..++..+
T Consensus 132 -~~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp -HHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 2347999999976554 7889999999999996553 222223356788888888899999999999999998
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHHcCChHHHHhhhccCChHHHHHHH
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~ 312 (715)
|. --.|++. ...+|.|++.+.+++. .-.++..|+.-+.... .-.-.+ .+|.|..-|......+++.++
T Consensus 203 ~~-~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~ 272 (986)
T 2iw3_A 203 TE-TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSA 272 (986)
T ss_dssp GG-GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHH
T ss_pred Hh-cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeE
Confidence 85 1222111 2468999999988754 3334444444322111 111111 467777778888889999999
Q ss_pred HHHHHHhcCC--cchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHH
Q 005088 313 LLLGQFAATD--SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 313 ~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~ 363 (715)
-++.|+|.-- +.... ..-..++|.|...... .+|++|+.|..++..|...
T Consensus 273 ~~~~n~~~lv~~~~~~~-~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 273 VIIDNMCKLVEDPQVIA-PFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHTTCCCHHHHH-HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhcCCHHHHh-hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 9999999643 22222 2225666777776655 8999999999888888544
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.63 E-value=0.00092 Score=75.47 Aligned_cols=278 Identities=13% Similarity=0.071 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--HHHHHHHcCChHHHHhhhc
Q 005088 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQPVIGLLS 301 (715)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~g~l~~L~~ll~ 301 (715)
+..++..+..+..++.... ....+++..|.+.+.+.... ..|+.++..|+..... .. ...--+.++.++..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~ 105 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAG 105 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhc
Confidence 4556666776664321111 11124567777777665333 8889999999743321 11 1222368899999998
Q ss_pred cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH--HHHHHhcCChHHHH
Q 005088 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI--TAGIAHNGGLVPLL 378 (715)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~--~~~l~~~~~l~~L~ 378 (715)
+....++..|..++..+...-+.... ..++|.|+..|.+ ..+..+..|+.++..|+... +-...-..++|.+.
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 181 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchH
Confidence 88888888887777777653333222 3357999998865 47999999999999999776 22233346889999
Q ss_pred HhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHH-----Hhhh----hHH
Q 005088 379 KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK-----IHGR----VLN 449 (715)
Q Consensus 379 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~l~ 449 (715)
..+.+..++|...|..++..+|..-.|... ...++.|++.+........|+- .+... +... ++|
T Consensus 182 ~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~----~l~~~tfv~~v~~~~l~~~~p 254 (986)
T 2iw3_A 182 ETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVH----LLGATTFVAEVTPATLSIMVP 254 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHH----HHTTCCCCSCCCHHHHHHHHH
T ss_pred hhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHH----HhhcCeeEeeecchhHHHHHH
Confidence 999999999999999999998754333211 1123333333322222223322 11111 1222 344
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhh--hcCCcHHHHHHHhcC-CCcchhhhhHHHHHHhhhh
Q 005088 450 HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF--IDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 450 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--~~~~~i~~L~~ll~~-~~~~~~~~aa~~L~~L~~~ 517 (715)
.|..-|+.....+++.++-++.||+.-.++.... .-...+|.+...... .+|++|..|..|+..|.+-
T Consensus 255 ~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 255 LLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 4555555568899999999999998765533221 123566777766654 8899999999998888554
No 119
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.39 E-value=0.017 Score=67.56 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=89.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh---CCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHH
Q 005088 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVP 376 (715)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L---~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~ 376 (715)
.+.++..++.++++++.++.+..... ...++.++..+ .++++.++..++++++.++..- ...-.-...++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45578889999999999986543321 22344555444 3357889999999999998654 111122367788
Q ss_pred HHHhhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 005088 377 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 456 (715)
Q Consensus 377 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~ 456 (715)
++..|++ +.|+..|+.++.+++... .. ...+. -..++..|..++.
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~--~~-----~l~p~--------------------------~~~il~~l~~~l~ 578 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICREC--KY-----DLPPY--------------------------AANIVAVSQDVLM 578 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHT--GG-----GCTTT--------------------------HHHHHHHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHH--HH-----HHHhh--------------------------HHHHHHHHHHHhc
Confidence 8888854 889999999999998421 11 11111 1224555666666
Q ss_pred hh--hhhHHHHHHHHHHhhcCC
Q 005088 457 VA--EKGVQRRVALALAHLCSP 476 (715)
Q Consensus 457 ~~--~~~v~~~a~~aL~~l~~~ 476 (715)
.. +...+..+..+++.++..
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHHHhc
Confidence 43 457788888888888654
No 120
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.26 E-value=0.0097 Score=68.76 Aligned_cols=315 Identities=12% Similarity=0.086 Sum_probs=166.4
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (715)
++..+..|...... .++.....++.+|.....--. ...++..+.++.+..+|.. + +++..|+.
T Consensus 191 ~~~~~~iL~~~~~~--~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~--~------------~~r~~A~e 253 (980)
T 3ibv_A 191 VSFVYEMMLAYSNA--KNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI--E------------ELRCAACE 253 (980)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS--H------------HHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC--h------------HHHHHHHH
Confidence 44445555443221 245577889999998887321 2345667788888888865 3 89999999
Q ss_pred HHHhhc-C--ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc------cCc-----cchhH--
Q 005088 139 ALGLLA-V--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH------ENS-----SIKTR-- 202 (715)
Q Consensus 139 ~L~~l~-~--~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~------~~~-----~~~~~-- 202 (715)
+|..+. . .++.+..++.. + .+...+..-... ..+.++.+..+..+..++. ..+ +.+..
T Consensus 254 cL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 254 TMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 999998 3 34443333322 1 122222221100 0012555444444433321 111 00000
Q ss_pred HHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCC----------hhhHHHHHhCCChHHHHHhhcCC------C----
Q 005088 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN----------DENKNQIVECNALPTLILMLRSE------D---- 262 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----------~~~~~~~~~~g~l~~L~~ll~~~------~---- 262 (715)
-.-.+.++.++.++.+++.++...++..+..+.... +..+..+. .+++.++.-+.-+ +
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ 405 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDS 405 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSS
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHH--HHHHHHHHHccCCCccccccccch
Confidence 111367888889998888888877777666555210 00011111 1233333333211 1
Q ss_pred ------HHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc---cCChHHHHHHHHHHHHHhcCCcchhHHH-hhc
Q 005088 263 ------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHI-VQR 332 (715)
Q Consensus 263 ------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~ 332 (715)
.+.|......+..++.-.++..-...-.-+.+.+.+.+. +.++..++.++.+++.++.+-....... -..
T Consensus 406 ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~ 485 (980)
T 3ibv_A 406 EEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 485 (980)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCccc
Confidence 134555543333333323332222110112222333332 2357888889999999876543322111 001
Q ss_pred ----CChHHHHHHhC-----CCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhh------ccCChhHHHHHHHHHH
Q 005088 333 ----GAVRPLIEMLQ-----SPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLL------DSKNGSLQHNAAFALY 397 (715)
Q Consensus 333 ----~~l~~L~~~L~-----~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll------~~~~~~v~~~a~~~L~ 397 (715)
.+++.+..++. .+.+.|+..++++++..+.--. .....++.++..+ .++++.|+..|+.++.
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~---~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD---YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG---TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHhccccccCCChhHHHHHHHHHH
Confidence 23455555544 5789999999999998875441 1235566655555 3567889999999999
Q ss_pred hccC
Q 005088 398 GLAD 401 (715)
Q Consensus 398 ~l~~ 401 (715)
+++.
T Consensus 563 ~f~~ 566 (980)
T 3ibv_A 563 RFVK 566 (980)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 121
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.24 E-value=0.075 Score=61.98 Aligned_cols=220 Identities=11% Similarity=0.067 Sum_probs=121.8
Q ss_pred chHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+|..++.++.+++.++....... ...++.++.++..-..... ...++..++++++.++..-...... -...
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~---~~~vr~~a~~~l~~~~~~l~~~~~~--l~~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKL---NVKLLGTALETMGSYCNWLMENPAY--IPPA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHTHHHHC----C--HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcccc---CHHHHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 34889999999999994322111 1345555554422110000 1288999999999998422211111 1234
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NI 283 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~-~~ 283 (715)
++.|+..+ + +.++..|++++.+++.... ..+.. .+++..+..++.. .+...+..+..+++.++...+ +.
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 56666666 3 6789999999999996332 22221 2455666677776 367888889999998865432 22
Q ss_pred HHHHHHcCChHHHHhh----hccC--ChHHHHHHHHHHHHHh---cC--Cc--c--------hhHHHhhcCChHHHHHHh
Q 005088 284 KKEVLAAGALQPVIGL----LSSC--CSESQREAALLLGQFA---AT--DS--D--------CKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~l----l~~~--~~~~~~~a~~~L~~l~---~~--~~--~--------~~~~~~~~~~l~~L~~~L 342 (715)
....+ ..+++.++.. +... +.+.+.....++..++ .. .. . .........+++.+..++
T Consensus 622 ~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 700 (971)
T 2x1g_F 622 IPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA 700 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHH
Confidence 22211 1233333333 3322 3333334444443333 11 00 0 001112246778777777
Q ss_pred CC--CCHHHHHHHHHHHHHhHHHH
Q 005088 343 QS--PDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 343 ~~--~~~~v~~~a~~~L~~l~~~~ 364 (715)
.. .+..+.+.++++++.++...
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHhh
Confidence 43 47899999999999987655
No 122
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.08 E-value=0.013 Score=68.41 Aligned_cols=289 Identities=9% Similarity=-0.015 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHhccCcc--chhHHHhcCCcHHHHHh-------hccCCH---HHHHHHHHHHHHHhcCChhhH-----
Q 005088 180 SVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVEL-------LEFTDT---KVQRAAAGALRTLAFKNDENK----- 242 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~l-------l~~~~~---~v~~~a~~~L~~L~~~~~~~~----- 242 (715)
++++.|+.++..+....+. ....+ ...++.++.+ +...+. +.....+..+..++......-
T Consensus 259 ~~~~~a~~~l~~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 336 (971)
T 2x1g_F 259 ELAESCLKTMVNIIIQPDCHNYPKTA--FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGIT 336 (971)
T ss_dssp HHHHHHHHHHHHHHHCSGGGGCHHHH--HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccccHHHH--HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999863321 11111 1122333322 233342 666677777777764222110
Q ss_pred -------HHHHhCCChHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC---------hhHHHHHH--HcCChHHHHhh
Q 005088 243 -------NQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS---------PNIKKEVL--AAGALQPVIGL 299 (715)
Q Consensus 243 -------~~~~~~g~l~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~---------~~~~~~~~--~~g~l~~L~~l 299 (715)
..+ ...++.++.+... .++++...++..+..++... +.....+. -..+++.++..
T Consensus 337 ~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 337 SADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp TCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1345556665533 47788888998887775411 11111111 12344555555
Q ss_pred hccC--------C-------hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHH
Q 005088 300 LSSC--------C-------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGR 359 (715)
Q Consensus 300 l~~~--------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-----~~~~v~~~a~~~L~~ 359 (715)
+.-+ + ...|+.+..++..++...++..... +++.+...+.. .++..++.++.+++.
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ 490 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEI----LAAMLDEAIADLQRHPTHWTKLEACIYSFQS 490 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 4321 1 1345566667777765333111111 12333344432 678899999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHhh---c--cCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHH
Q 005088 360 LAQVITAGIAHNGGLVPLLKLL---D--SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 434 (715)
Q Consensus 360 l~~~~~~~l~~~~~l~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~ 434 (715)
++....... ...++.++.++ . +.++.++..++++++.++..-.... ..
T Consensus 491 iae~~~~~~--~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-----~~-------------------- 543 (971)
T 2x1g_F 491 VAEHFGGEE--KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-----AY-------------------- 543 (971)
T ss_dssp TTTC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------C--------------------
T ss_pred HHhhcChhh--hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-----HH--------------------
Confidence 976651111 13344444433 3 3489999999999999873211000 00
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhh--hcCCcHHHHHHHhcCC--CcchhhhhHHH
Q 005088 435 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF--IDGGGLELLLGLLGST--NPKQQLDGAVA 510 (715)
Q Consensus 435 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--~~~~~i~~L~~ll~~~--~~~~~~~aa~~ 510 (715)
-..+++.|+..| + +.++..|+.++.+++..- +..+ +-...+..|..++..+ +...+..+..+
T Consensus 544 ---------l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~a 609 (971)
T 2x1g_F 544 ---------IPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFS 609 (971)
T ss_dssp ---------HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 112566667666 2 789999999999998432 2222 1124455666667663 34667777777
Q ss_pred HHHhhhh
Q 005088 511 LFKLANK 517 (715)
Q Consensus 511 L~~L~~~ 517 (715)
+..++..
T Consensus 610 i~~i~~~ 616 (971)
T 2x1g_F 610 IGKLMSL 616 (971)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777653
No 123
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.04 E-value=0.1 Score=60.35 Aligned_cols=409 Identities=10% Similarity=-0.005 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcC--Chh----h
Q 005088 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV--KPE----H 149 (715)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~--~~~----~ 149 (715)
++..+.+|-..|..+-.+++. ......+|..+.. .+..+|.-|+.+|.+... .++ .
T Consensus 21 d~~~r~~A~~~L~~~q~sp~a---------w~~~~~iL~~~~~---------~~~~vr~fa~~~L~~~I~~l~~e~~~~~ 82 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSSTG---------WKICHEIFSEKTK---------YKPSTRLICLQTLSEKVREWNNESNLLE 82 (980)
T ss_dssp CHHHHHHHHHHHHHHHHSTTH---------HHHHHHHTTCTTT---------SCHHHHHHHHHHHHHHHHHCCTTTSHHH
T ss_pred CHHHHHHHHHHHHHHHcChhH---------HHHHHHHHhCCCC---------CCHHHHHHHHHHHHHHHHhCChhhhHHH
Confidence 566788888888877766553 3445566655421 023899999999887662 223 2
Q ss_pred HHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCcHHHHHhhccCCH-HHHHHH
Q 005088 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFTDT-KVQRAA 227 (715)
Q Consensus 150 ~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a 227 (715)
+..+. ..++.++........ +.-++...+.++..+.... +... .+.++.++.++..++. ......
T Consensus 83 ~~~lr-----~~ll~~l~~~~~~~~---~~~IrnKL~~~la~l~~~~~p~~W-----p~~i~~l~~~~~~~~~~~~~~~~ 149 (980)
T 3ibv_A 83 LQMIR-----DSVWSYIKELSFLDE---PAYISNAVQHLLTLLFLQLYPSNW-----NDFFASLQGVIAASSQSEFSNFY 149 (980)
T ss_dssp HHHHH-----HHHHHHHHHCCSTTS---CTHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHhCcccC-----chHHHHHHHHhcCCChhHHHHHH
Confidence 32222 334444443221111 1278888888888887532 1111 2456677777765443 344455
Q ss_pred HHHHHHHhcC--C------hh--h-----HHHHHhC-------CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 005088 228 AGALRTLAFK--N------DE--N-----KNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (715)
Q Consensus 228 ~~~L~~L~~~--~------~~--~-----~~~~~~~-------g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (715)
+++|..+..+ + .. . ++.+.+. +.+..|.....+.++.++..++.+|......-+ ..
T Consensus 150 LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~ 227 (980)
T 3ibv_A 150 LKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--IN 227 (980)
T ss_dssp HHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HH
T ss_pred HHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HH
Confidence 5566544432 0 00 1 1222211 122223333334688899999999998865433 24
Q ss_pred HHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCc--chhHHHhhcCChHHHHHHhC--CCCHHHHHHHHHHHHHhH
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLA 361 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~~L~--~~~~~v~~~a~~~L~~l~ 361 (715)
.+...+.++.+..++.+ ++++..|+.+|..+..... +.+..++..=.+...+..+. ..|.+..+..+..+..++
T Consensus 228 ~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~g 305 (980)
T 3ibv_A 228 LIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQG 305 (980)
T ss_dssp HHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 55566788888888875 7899999999999886432 22222322100111121222 467777766666665555
Q ss_pred HHHHHHH----------------HhcCChHHHHHhhccCChhHHHHHHHHHHhccCC----------CchhhHHHh---h
Q 005088 362 QVITAGI----------------AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN----------EDNVADFIR---V 412 (715)
Q Consensus 362 ~~~~~~l----------------~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----------~~~~~~l~~---~ 412 (715)
....... .-.+.++.++.++.+++.++...++..+..+... .+....+.. .
T Consensus 306 e~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~ 385 (980)
T 3ibv_A 306 VELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLE 385 (980)
T ss_dssp HHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 4431110 0114677777777777777777666665544321 011011111 0
Q ss_pred ccccccccchhh-------------hhhhhhHHHHHHHHHHHHHhhhhHH----HHHHHHh-------hhhhhHHHHHHH
Q 005088 413 GGVQKLQDGEFI-------------VQATKDCVAKTLKRLEEKIHGRVLN----HLLYLMR-------VAEKGVQRRVAL 468 (715)
Q Consensus 413 ~~i~~L~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~----~L~~ll~-------~~~~~v~~~a~~ 468 (715)
..+.++.-.... ...-+.++......+..+....+++ .+...+. +.+....+.++.
T Consensus 386 ~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~ 465 (980)
T 3ibv_A 386 AIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALY 465 (980)
T ss_dssp HHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 111111111000 0111122222222222222233333 3333332 346788899999
Q ss_pred HHHhhcCCCcc--chhh----hcCCcHHHHHHHhc-----CCCcchhhhhHHHHHHhhhhcc
Q 005088 469 ALAHLCSPDDQ--RTIF----IDGGGLELLLGLLG-----STNPKQQLDGAVALFKLANKAT 519 (715)
Q Consensus 469 aL~~l~~~~~~--~~~~----~~~~~i~~L~~ll~-----~~~~~~~~~aa~~L~~L~~~~~ 519 (715)
+|+.++..-.+ .... .-...++.+..++. .+++.++..+.+.+...+....
T Consensus 466 ~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~ 527 (980)
T 3ibv_A 466 ETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD 527 (980)
T ss_dssp HHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999775332 1110 01124566666665 6788899999999998888764
No 124
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.02 E-value=0.0009 Score=63.04 Aligned_cols=178 Identities=21% Similarity=0.166 Sum_probs=110.8
Q ss_pred hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCC
Q 005088 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN 173 (715)
Q Consensus 94 ~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 173 (715)
+..|......=....+..++++++. .||..++..| . .+.+..++++.+.
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~D~~~------------~VR~~aA~~L---~--------------~~~L~~ll~D~d~-- 112 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIRDSDE------------VVRRAVAYRL---P--------------REQLSALMFDEDR-- 112 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTTCSSH------------HHHHHHHTTS---C--------------SGGGGGTTTCSCH--
T ss_pred HHHHHHHHHhCCHHHHHHHccCcCH------------HHHHHHHHHC---C--------------HHHHHHHHcCCCH--
Confidence 5556555554334455566666555 7777776532 1 1234455555443
Q ss_pred cchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 005088 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (715)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~ 253 (715)
.++..++..+ . .+.+..+++++++.|+..++.. +. .+.
T Consensus 113 ------~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~ 150 (244)
T 1lrv_A 113 ------EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGR 150 (244)
T ss_dssp ------HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGG
T ss_pred ------HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHH
Confidence 6776666532 1 1245566777888888877762 21 123
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcC
Q 005088 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (715)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (715)
+..+++++++.||..++.. + ..+.+..++.+.++.|+..++..+
T Consensus 151 l~~l~~D~d~~VR~~aa~~---l---------------~~~ll~~ll~D~d~~VR~aaa~~l------------------ 194 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKR---L---------------PEESLGLMTQDPEPEVRRIVASRL------------------ 194 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHH---S---------------CGGGGGGSTTCSSHHHHHHHHHHC------------------
T ss_pred HHHHHcCCCHHHHHHHHHc---C---------------CHHHHHHHHcCCCHHHHHHHHHhC------------------
Confidence 4466777888888887764 1 123455677888888888877642
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHH
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 396 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 396 (715)
..+.|..++.++++.||..++..+. .+.+..+ .++++.|+..+...|
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1246777788889999988877652 3455555 888899988887654
No 125
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.02 E-value=0.00093 Score=59.60 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=73.1
Q ss_pred EEEEecCeeecchHHHHhhcc-HHHHHhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH-HHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLR 623 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~ 623 (715)
|.+-|+|..|...+..|.... .+|..||.+.+. ....+.+-+ |-++..|+.+|.|+-+|.+.++.+ ....+++
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~e 92 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLE 92 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHHH
Confidence 678899999999999998654 378889876521 122345555 568999999999999999986543 3367999
Q ss_pred HHHHhChhhHHHHHHHHHHh
Q 005088 624 AADQYLLEGLKRLCEYTIAQ 643 (715)
Q Consensus 624 ~A~~~~~~~L~~~~~~~l~~ 643 (715)
-|++|+++.|...|...+..
T Consensus 93 EA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 93 EAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHHH
Confidence 99999999999999887754
No 126
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.99 E-value=0.092 Score=60.77 Aligned_cols=311 Identities=9% Similarity=0.069 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHH-hhhcCCCCcccccCCCccchHHHh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEK 134 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~-~lL~~~~~~~~~~~~~~~~~~v~~ 134 (715)
....+.+++.+...+... .++++...++.++.....--. ...++..+.++.++ .+|.. + +++.
T Consensus 189 ~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~--~------------~~r~ 252 (1023)
T 4hat_C 189 SKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTS--P------------DTRA 252 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHS--H------------HHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCC--H------------HHHH
Confidence 344566666665555432 244566778888888777311 23466788999999 88753 3 8999
Q ss_pred hHHHHHHhhcC-C---h--hhHHHHHhcCChHHHHHHH---------------ccccCCCcchhhhHHHHHHHHHHHHHh
Q 005088 135 GSAFALGLLAV-K---P--EHQQLIVDNGALSHLVNLL---------------KRHMDSNCSRAVNSVIRRAADAITNLA 193 (715)
Q Consensus 135 ~a~~~L~~l~~-~---~--~~~~~i~~~~~l~~L~~lL---------------~~~~~~~~~~~~~~~~~~a~~~L~~L~ 193 (715)
.|+.+|..+.. . + .....+.. .++.++..+ ...+. .+.+.....+..+..+.
T Consensus 253 ~A~ecL~eIv~~~~~~~~~~~~~~l~~--lf~~~l~~l~~~i~p~~~~l~~~~~~~~~-----~D~e~~~~l~~l~~~~~ 325 (1023)
T 4hat_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYL 325 (1023)
T ss_dssp HHHHHHHHHHTSCCCSSCHHHHHHHHH--HHHHHHHHHHHHTCCTTCCHHHHHHHTCT-----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCchHHHHHHHHH--HHHHHHHHHHHHhCCCcchHHHHHhcccc-----chHHHHHHHHHHHHHHH
Confidence 99999999983 2 2 12211110 111111111 11110 01266666666666655
Q ss_pred ccCccc-------hhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC---Chhh----HHHHHhCCChHHHHHhhc
Q 005088 194 HENSSI-------KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDEN----KNQIVECNALPTLILMLR 259 (715)
Q Consensus 194 ~~~~~~-------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~----~~~~~~~g~l~~L~~ll~ 259 (715)
...... +..+ ..++..|+.+-..++.++...++..=..++.+ .+.. +..+. .+++.+++-+.
T Consensus 326 e~~~~li~~~~~~~~~l--~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~--~L~~vli~km~ 401 (1023)
T 4hat_C 326 ARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRLVIIENMV 401 (1023)
T ss_dssp HHHGGGGTSCGGGHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH--HHHHHHHHSCC
T ss_pred HHHHHHHhCCcchhHHH--HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHhcC
Confidence 322110 1100 01223444444566777766666544444421 1001 11111 13344444333
Q ss_pred CCC--------------------H------HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc--CChHHHHHH
Q 005088 260 SED--------------------S------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREA 311 (715)
Q Consensus 260 ~~~--------------------~------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~a 311 (715)
-++ + ..| .++..+.++.. ++.... .++.+...+.. .++..++.+
T Consensus 402 ~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R-d~L~~l~~l~~--~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~ 473 (1023)
T 4hat_C 402 RPEEVLVVENDEGEIVREFVKESDTIQLYKSER-EVLVYLTHLNV--IDTEEI-----MISKLARQIDGSEWSWHNINTL 473 (1023)
T ss_dssp CCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH-HHHHHHHHHCH--HHHHHH-----HHHHHHHHHSSTTCCHHHHHHH
T ss_pred CCcccccCCCCCccHHHHhccchHHHHHHHHHH-HHHHHHhccCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHHHH
Confidence 221 0 111 33333333311 111111 22333333433 469999999
Q ss_pred HHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCC
Q 005088 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKN 385 (715)
Q Consensus 312 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~ 385 (715)
+++++.++.+.......-.-..+++.|+.++.. +...++..++++|+..+.-- ...-.=...+..+...+.+++
T Consensus 474 ~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~ 553 (1023)
T 4hat_C 474 SWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH 553 (1023)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC
Confidence 999999986544332222223467777777752 33446678889999887644 111011123444555556778
Q ss_pred hhHHHHHHHHHHhccC
Q 005088 386 GSLQHNAAFALYGLAD 401 (715)
Q Consensus 386 ~~v~~~a~~~L~~l~~ 401 (715)
+.++..|++++.++|.
T Consensus 554 ~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 554 EGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999985
No 127
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.96 E-value=0.042 Score=52.00 Aligned_cols=175 Identities=12% Similarity=0.080 Sum_probs=121.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh----hcCCCHHHHHHHHHHHHHhhcC----Ch
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM----LRSEDSAIHYEAVGVIGNLVHS----SP 281 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l----l~~~~~~v~~~a~~~L~~L~~~----~~ 281 (715)
+.+...+-+.+..-+..++..|......++. .+.. .++.+++. +.+.+..+...++.+|..+... ..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556666667777788888877776643332 2222 23444443 3367888988888888887421 00
Q ss_pred hHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 282 ~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
..... ...-++|.|+.-+.+....+|..+-.++..++...+. ..+++.++..+++.++.+|..++..+..+.
T Consensus 124 ~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 01000 0122689999999998888988887777766532121 235678888889999999999999999998
Q ss_pred HHH-HHHHHhcCCh---HHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 362 QVI-TAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 362 ~~~-~~~l~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
... .. ...++ +.+..++.+.+..||..|..++..+-
T Consensus 196 ~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 196 TNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 777 22 24578 99999999999999999999998764
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.94 E-value=0.033 Score=53.86 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=150.6
Q ss_pred HHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh----HHHHHh-CCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 203 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~----~~~~~~-~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
+...+.+..|+..+..=+.+.+..+..++.++....... ...+.. ..++..|+... +++++...+-..|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHH
Confidence 445677888888888888899999999999998754332 122222 22333333333 35556666666666664
Q ss_pred cCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhc---CChHHHHHHhCCCCHHHHHHHH
Q 005088 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSA 354 (715)
Q Consensus 278 ~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~~L~~~~~~v~~~a~ 354 (715)
. .+.....++..+.+-.+.+.++.++.++...|..++..+-..........+.. .++...-.+|.+++.-.++.++
T Consensus 152 r-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 152 R-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp T-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred H-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 4 57778888888888999999999999999999998888765544443344432 3566777889999999999999
Q ss_pred HHHHHhHHHH------HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhH
Q 005088 355 FALGRLAQVI------TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 408 (715)
Q Consensus 355 ~~L~~l~~~~------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (715)
..|+.+.... .+++.+..-+..++.+|++++..+|..|..+..-+..+|...+.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 9999998765 66777778899999999999999999999999888766544433
No 129
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.90 E-value=0.21 Score=58.14 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=174.5
Q ss_pred chHHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+|..++.++++++.++...... ....++.++..+..-..+ ...++..++++++.++..-..... .-...
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~~--~l~~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHPV--MINSV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCHH--HHTTT
T ss_pred chHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCHH--HHHHH
Confidence 4589999999999999321110 123345555555332211 127899999999999852222111 23477
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NI 283 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~-~~ 283 (715)
++.++..+.+ +.++..|+.+|.+++..... .+.. .+++..|..++.. .+...+..+..+++.++...+ +.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 8888888854 78999999999999963221 1111 1233444455554 256888888999999875443 32
Q ss_pred HHHHHHcCChHHHHhhhc----cC-ChHHHHH---HHHHHHHHhcCCcc-------------------hh--HHHhhcCC
Q 005088 284 KKEVLAAGALQPVIGLLS----SC-CSESQRE---AALLLGQFAATDSD-------------------CK--VHIVQRGA 334 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~~~~-------------------~~--~~~~~~~~ 334 (715)
....+ ..+++.+...+. .. +++.+.. ...+|+.+...-.. .. .......+
T Consensus 606 ~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (963)
T 2x19_B 606 ILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV 684 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence 22222 224444444332 22 3444443 33344443321100 00 01122334
Q ss_pred hHHHHHHhCC--CCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhh----cc-CChhHHHHHHHHHHhccC----CC
Q 005088 335 VRPLIEMLQS--PDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLL----DS-KNGSLQHNAAFALYGLAD----NE 403 (715)
Q Consensus 335 l~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll----~~-~~~~v~~~a~~~L~~l~~----~~ 403 (715)
++.+..++.. .++.+.+.++.++..++......+ ...++.++..+ .. ..+. .++++..+.. .+
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCc
Confidence 5555555532 467888888888887764331111 12244444333 11 2222 2222222221 10
Q ss_pred chhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhh---hhhhHHHHHHHHHHhhcCCCccc
Q 005088 404 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---AEKGVQRRVALALAHLCSPDDQR 480 (715)
Q Consensus 404 ~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~ 480 (715)
.....+. . .-..++..++.++.. ..|+++......+..+.......
T Consensus 759 ~~~~~~~------------------------------~-~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 759 AHFPPIE------------------------------A-LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp TTCHHHH------------------------------H-HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred chHHHHH------------------------------H-HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 0000000 0 001123334444442 35889998888888875432211
Q ss_pred hhhhc----CCcHHHHHHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 481 TIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 481 ~~~~~----~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
. +.. ...++.+...+...+..+...+...+.++...
T Consensus 808 ~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 808 F-LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp G-GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred H-cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 1 111 12344556667778888888999999988875
No 130
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.021 Score=55.45 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=125.2
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhH--HHHH-h-CCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV-E-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-- 282 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~-~-~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-- 282 (715)
+| |-.-|.+.+...|..|+..|..+....+... .... . ....+.+-+.+.+.+..++..++.++..++.....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6677889999999999999988875433221 1111 1 23456777888889999999999999988643211
Q ss_pred ---HHHHHHHcCChHHHHhh-hccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 005088 283 ---IKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (715)
Q Consensus 283 ---~~~~~~~~g~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~ 358 (715)
......-..+++.|+.- +.+....++..+..++..++...... ..++..+...+.+.+|.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111223456767754 67777888888888887776422111 112456667788899999999999999
Q ss_pred HhHHHH-HHHH----HhcCChHHHHHhhccCChhHHHHHHHHHHhccCC
Q 005088 359 RLAQVI-TAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 359 ~l~~~~-~~~l----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 402 (715)
.+.... ...+ .-..+++.+..++.+.++.||..|..++..+.+.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 887664 1111 1113455677788999999999999999888644
No 131
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.75 E-value=0.1 Score=61.28 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=152.3
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHH-HHccccCCCcchhhhHHHHHHHHHHHHHhccCc-cc----hhHHH
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SI----KTRVR 204 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~----~~~~~ 204 (715)
+++..++.++.+...--.. ..+.....++.+.+ ++. ++ +++..++.+|..+..... .. ...+.
T Consensus 210 ~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~--~~--------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~ 278 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT--SP--------DTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH--SH--------HHHHHHHHHHHHHHHCCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC--CH--------hHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 7899999999887621111 22344556666663 332 22 888999999999986421 11 11110
Q ss_pred h--cCCcHHHHH-h----------h---ccCCHHHHHHHHHHHHHHhcC-------ChhhHHHHHhCCChHHHHHhhcCC
Q 005088 205 M--EGGIPPLVE-L----------L---EFTDTKVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSE 261 (715)
Q Consensus 205 ~--~g~i~~L~~-l----------l---~~~~~~v~~~a~~~L~~L~~~-------~~~~~~~~~~~g~l~~L~~ll~~~ 261 (715)
. .+.+..+.. + . .+.+.+.....+..+..+... .+.....+ ..+++.++.....+
T Consensus 279 ~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~ 356 (1049)
T 3m1i_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE 356 (1049)
T ss_dssp HHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC
Confidence 0 111221111 1 1 122344445555555444321 11112211 13466666666777
Q ss_pred CHHHHHHHHHHHHHhhc----CC--hhHHHHHHHcCChHHHHhhhccC-------------------Ch---HHHHHHHH
Q 005088 262 DSAIHYEAVGVIGNLVH----SS--PNIKKEVLAAGALQPVIGLLSSC-------------------CS---ESQREAAL 313 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~----~~--~~~~~~~~~~g~l~~L~~ll~~~-------------------~~---~~~~~a~~ 313 (715)
+.++...++.....++. .. ......+. ..+++.++..+.-+ +. ..++.+..
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~ 435 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence 88888888887777754 11 11111111 12344444444211 00 22444556
Q ss_pred HHHHHhcCCcchhHHHhhcCChHHHHHHhC--CCCHHHHHHHHHHHHHhHHHH-HH--HHHhcCChHHHHHhhc-----c
Q 005088 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVI-TA--GIAHNGGLVPLLKLLD-----S 383 (715)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~-~~--~l~~~~~l~~L~~ll~-----~ 383 (715)
+|..++...+.....+ +.+.+-..+. ..++..++.++++++.++... .. .-.-..+++.+..+.. +
T Consensus 436 ~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 6766664332211111 2344445554 367899999999999887533 11 1111123333333322 1
Q ss_pred CChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHH
Q 005088 384 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQ 463 (715)
Q Consensus 384 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~ 463 (715)
+++.++..++++++.++..-..... .-..+++.++..|.++++.|+
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~----------------------------------~l~~vl~~ll~~l~~~~~~V~ 557 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWN----------------------------------FLRTVILKLFEFMHETHEGVQ 557 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHH----------------------------------HHHHHHHHHHHHTTSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHH----------------------------------HHHHHHHHHHHHhcCCCHHHH
Confidence 3344555688888887522100000 112356777778888889999
Q ss_pred HHHHHHHHhhcCC
Q 005088 464 RRVALALAHLCSP 476 (715)
Q Consensus 464 ~~a~~aL~~l~~~ 476 (715)
..|+.++.+++..
T Consensus 558 ~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 558 DMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 132
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.69 E-value=0.0052 Score=63.02 Aligned_cols=238 Identities=16% Similarity=0.097 Sum_probs=147.3
Q ss_pred chHHHhhHHHHHHhhc-CChhhHHHHHhc--CChHHHHHHH--ccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHH
Q 005088 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDN--GALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (715)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~i~~~--~~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 203 (715)
.|++|-.|+.+|..+. ............ ...-.++-++ +.-.+-...+....+++.|+.+|+.+ .+-+..
T Consensus 187 ~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e---- 261 (800)
T 3oc3_A 187 EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP---- 261 (800)
T ss_dssp SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS----
T ss_pred chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh----
Confidence 3499999999999887 221100000001 1122222222 21111111122348999999999999 544432
Q ss_pred HhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 005088 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (715)
Q Consensus 204 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (715)
..++..++..+..+..+++..++-.|.++.. -... -.++++.++..|.+.+++|+..|+.+|..++ .++.
T Consensus 262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~ 331 (800)
T 3oc3_A 262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDS 331 (800)
T ss_dssp --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSST
T ss_pred --HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhh
Confidence 2344555555677889999999999999821 1111 1346788888899999999999999999997 2222
Q ss_pred HHHHHHcCChHHHHhhhccCC--hHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 284 KKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
... ++..+.+.|.+.+ ..........|+.+++..... ..+...+|.|..+++++-+.||.+++.+|..+.
T Consensus 332 l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 332 LDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 222 3455555555432 233445566777777654321 122377899999999999999999999997775
Q ss_pred HHHHHHHHhcCChHH-HHHhhccCChhHHHHHHHHHH
Q 005088 362 QVITAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALY 397 (715)
Q Consensus 362 ~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~~a~~~L~ 397 (715)
.. .++.. +.++|-..+.+++..+..+-.
T Consensus 404 ~~--------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 EE--------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CH--------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hh--------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 21 22222 334556788888888877764
No 133
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.68 E-value=0.029 Score=54.20 Aligned_cols=201 Identities=13% Similarity=0.150 Sum_probs=146.4
Q ss_pred HHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchh----HHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHH
Q 005088 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR 359 (715)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~ 359 (715)
+.+...+.+..|+..|..-+.+.++.++.+..++.......+ ..+.. -...|.-++.. .++++...+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 555667889999999999999999999999999886544322 22222 12222222322 466677788888888
Q ss_pred hHHHH--HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc-cCCCchhhHHHhhccccccccchhhhhhhhhHHHHHH
Q 005088 360 LAQVI--TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 436 (715)
Q Consensus 360 l~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~ 436 (715)
+..+. .+.+...+.+..+.+.++.++-+|..-|..++..+ .+++.-...+...+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n----------------------- 206 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH----------------------- 206 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh-----------------------
Confidence 88877 77777777788888999999999999999999887 45544444444432
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchhh----hcCCcHHHHHHHhcCCCcchhhhhHHHHH
Q 005088 437 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF----IDGGGLELLLGLLGSTNPKQQLDGAVALF 512 (715)
Q Consensus 437 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~----~~~~~i~~L~~ll~~~~~~~~~~aa~~L~ 512 (715)
...+...+-.+|.+++--++++++..|+.+..+..+..+| .+..-+..+..+|.++...+|..|-...-
T Consensus 207 -------yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 207 -------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp -------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence 1225566778899999999999999999997776654444 33466889999999999999999987665
Q ss_pred Hhhhh
Q 005088 513 KLANK 517 (715)
Q Consensus 513 ~L~~~ 517 (715)
-..-+
T Consensus 280 vFVAN 284 (341)
T 1upk_A 280 VFVAN 284 (341)
T ss_dssp HHHHC
T ss_pred eeeeC
Confidence 44443
No 134
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.61 E-value=0.022 Score=52.41 Aligned_cols=177 Identities=12% Similarity=0.171 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcC
Q 005088 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (715)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~ 157 (715)
...|+..|..++++|+.|..+.+++..-.|.++|+..+... ++ .-+|..++.+++.+. ++++....+.+.+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r------~f-E~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTR------PF-EYLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSH------HH-HHHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCC------cc-hhhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 46677777888889999999999999999999998877632 12 278899999999999 8888889999999
Q ss_pred ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchh------HHH-hcCCcHHH-HHhhccCCHHHHHHHHH
Q 005088 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVR-MEGGIPPL-VELLEFTDTKVQRAAAG 229 (715)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~~-~~g~i~~L-~~ll~~~~~~v~~~a~~ 229 (715)
++|..++.++..+. -.+..|..++..+..++..... .+. -..++..+ ..+.+++++.+.+..++
T Consensus 146 iiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiir 217 (268)
T 2fv2_A 146 IIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVR 217 (268)
T ss_dssp HHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999998874 5555666667666643221110 111 11223223 33456788999999999
Q ss_pred HHHHHhcCChhhHHHHHhC-------CChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005088 230 ALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL 276 (715)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~-------g~l~~L~~ll~~~~~~v~~~a~~~L~~L 276 (715)
+-..|+. ++..+..+... |... .++ .+|+.++.+-...+.|+
T Consensus 218 cYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 218 CYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 9999994 78877776541 2222 222 35788888887777776
No 135
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.61 E-value=0.097 Score=48.26 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhcC-hhhHHHHHh-cCChHHHHhhhcCCCCcccccCCCccch---HHHhhHHHHHHhhcCChhhHHHH
Q 005088 79 AAKRATHVLAELAKN-EEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEH---EVEKGSAFALGLLAVKPEHQQLI 153 (715)
Q Consensus 79 ~~~~a~~~L~~l~~~-~~~~~~~~~-~g~v~~L~~lL~~~~~~~~~~~~~~~~~---~v~~~a~~~L~~l~~~~~~~~~i 153 (715)
.++.|+..|..--.. ++..-.+.. .|.+..|++=+-+--+.. .|+.... .-...|+..|.-++.+|+.|..+
T Consensus 17 ~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~l---spp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 17 TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSI---NPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGB---TTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccC---CCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 466777666654443 555555554 576666643221111100 0111111 22334555666677999999999
Q ss_pred HhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc-cCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHH
Q 005088 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (715)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (715)
...+..-.|..+|+..+. .++..-++-.++++++.+.. ++++.-..+...+.+|..++.++.+++-.+..|..++.
T Consensus 94 l~a~iplyLyPfL~t~sk---~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlq 170 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSK---TRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQ 170 (268)
T ss_dssp HHTTGGGGTHHHHHCCCC---SHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccC---CCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999988888899887654 34445888899999999984 44566667778899999999999999888888888888
Q ss_pred HHhcCChhhHHHHHh--------CCChHH-HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-------cCChHHH
Q 005088 233 TLAFKNDENKNQIVE--------CNALPT-LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-------AGALQPV 296 (715)
Q Consensus 233 ~L~~~~~~~~~~~~~--------~g~l~~-L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-------~g~l~~L 296 (715)
.+.. ++..-..+.. ..++.. +..+.+++++.+.++.+++-..|+. ++..+..+.. .|.+..+
T Consensus 171 KIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~~~ 248 (268)
T 2fv2_A 171 KILL-DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTTFAQV 248 (268)
T ss_dssp HHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTHHH
T ss_pred HHhc-cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChHHHHH
Confidence 8875 3333222211 112222 2234556789999999999999954 4665555443 1222222
Q ss_pred HhhhccCChHHHHHHHHHHHHH
Q 005088 297 IGLLSSCCSESQREAALLLGQF 318 (715)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l 318 (715)
+ .+++.+++.-...+.|+
T Consensus 249 ---l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 249 ---L-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp ---H-TSCHHHHHHHHHHHHHS
T ss_pred ---H-hcCHHHHHHHHHHHHhc
Confidence 2 24566666666666554
No 136
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.55 E-value=0.24 Score=58.24 Aligned_cols=314 Identities=9% Similarity=0.075 Sum_probs=160.3
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (715)
.+.++..+...+... .+..++..++.++.+....-.. ..+.....++.+.+.+.. ++ +++..|+.
T Consensus 192 ~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~-~~------------~~~~~a~~ 256 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT-SP------------DTRAITLK 256 (1049)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH-SH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC-CH------------hHHHHHHH
Confidence 444544444443322 2345677888888876653111 224556667777633221 33 89999999
Q ss_pred HHHhhc-CC--hh---hHHHHHhcCChHHHHHHHcc---------------ccCCCcchhhhHHHHHHHHHHHHHhc---
Q 005088 139 ALGLLA-VK--PE---HQQLIVDNGALSHLVNLLKR---------------HMDSNCSRAVNSVIRRAADAITNLAH--- 194 (715)
Q Consensus 139 ~L~~l~-~~--~~---~~~~i~~~~~l~~L~~lL~~---------------~~~~~~~~~~~~~~~~a~~~L~~L~~--- 194 (715)
+|..+. .. +. ....+.. ..+.++..+.. ..+ ...+.....+..+..+..
T Consensus 257 ~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~-----~d~~~~~~l~~~~~~~~~~~~ 329 (1049)
T 3m1i_C 257 CLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYLARNR 329 (1049)
T ss_dssp HHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCT-----THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCc-----chHHHHHHHHHHHHHHHHHHH
Confidence 999998 31 22 1111110 11222332211 111 012444455555544332
Q ss_pred ----cCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcC---Chh----hHHHHHhCCChHHHHHhhcCC--
Q 005088 195 ----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDE----NKNQIVECNALPTLILMLRSE-- 261 (715)
Q Consensus 195 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~----~~~~~~~~g~l~~L~~ll~~~-- 261 (715)
..+.....+ ..+++.++.+...++.++...++.....++.. .+. .+..+. .+++.++..+.-+
T Consensus 330 ~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~--~Lv~~ll~~m~~~ed 405 (1049)
T 3m1i_C 330 ALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRLVIIENMVRPEE 405 (1049)
T ss_dssp HHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH--HHHHHHHHTCCCCTT
T ss_pred HHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH--HHHHHHHHhcCCCcc
Confidence 111111111 23456666666677888888888888777741 011 111111 1334444433211
Q ss_pred -----------------CH---HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc--cCChHHHHHHHHHHHHHh
Q 005088 262 -----------------DS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFA 319 (715)
Q Consensus 262 -----------------~~---~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~ 319 (715)
+. ..+..+..+|..++...+.....+ +.+.+...+. ..++..+..++++++.++
T Consensus 406 ~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 406 VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp CCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTT
T ss_pred eeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 11 224445556666653332211111 2344444443 346888999999999987
Q ss_pred cCCcchhHHHhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHH
Q 005088 320 ATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAA 393 (715)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 393 (715)
.........-.-..+++.|..+... +.+.++..++++++.++.-- ...-.-..+++.++..++++++.|+..|+
T Consensus 482 ~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~ 561 (1049)
T 3m1i_C 482 GTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMAC 561 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred cccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5432221111112234444443322 23445556889998887543 11111123566677778888999999999
Q ss_pred HHHHhccCC
Q 005088 394 FALYGLADN 402 (715)
Q Consensus 394 ~~L~~l~~~ 402 (715)
.++.+++..
T Consensus 562 ~al~~l~~~ 570 (1049)
T 3m1i_C 562 DTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
No 137
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.54 E-value=0.18 Score=58.37 Aligned_cols=145 Identities=12% Similarity=0.034 Sum_probs=88.2
Q ss_pred chHHHhhHHHHHHhhcCChhh-HHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcC
Q 005088 129 EHEVEKGSAFALGLLAVKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (715)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g 207 (715)
+|..++.++++++.+++.... ...-.-..+++.|+.++...... +. ..-++..++|+++..+..-...... -..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~-d~--k~~v~~t~~~~lGry~~wl~~~~~~--L~~ 540 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK-DN--KAVVASDIMYVVGQYPRFLKAHWNF--LRT 540 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH-HH--HHHHHHHHHHHHHTCHHHHHHCHHH--HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC-cc--hHHHHHHHHHHHHHHHHHHhccHHH--HHH
Confidence 569999999999999944322 12222234677888877642110 00 0145557889999887422111111 124
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHH----HhhcCCCHHHHHHHHHHHHHhh
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE------CNALPTLI----LMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~l~~L~----~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
.+..|+..+.++++.++..||+++.++|. ..+..+.. ...++.++ ..+..-++.-+..+..+++.+.
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55667777777789999999999999996 23333332 11334333 3334456677778888888886
Q ss_pred cCCh
Q 005088 278 HSSP 281 (715)
Q Consensus 278 ~~~~ 281 (715)
...+
T Consensus 618 ~~~~ 621 (1023)
T 4hat_C 618 SEER 621 (1023)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6543
No 138
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.52 E-value=0.003 Score=59.46 Aligned_cols=173 Identities=18% Similarity=0.099 Sum_probs=115.6
Q ss_pred HhHHHHHHHHH-----HHHHHhcC--hhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCCh
Q 005088 75 ADRAAAKRATH-----VLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP 147 (715)
Q Consensus 75 ~~~~~~~~a~~-----~L~~l~~~--~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 147 (715)
.++.++..++. .|..+..+ +..|......-..+.|..++++++. .||..++..+ .
T Consensus 62 ~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~------------~VR~~aA~~l---~--- 123 (244)
T 1lrv_A 62 PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDR------------EVRITVADRL---P--- 123 (244)
T ss_dssp SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCH------------HHHHHHHHHS---C---
T ss_pred CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCH------------HHHHHHHHhC---C---
Confidence 35667777764 34444453 4556666655445677788877776 9998888743 1
Q ss_pred hhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHHHHH
Q 005088 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA 227 (715)
Q Consensus 148 ~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a 227 (715)
.+.+..++++.+. .++..++.. + ..+.+..+++++++.|+..+
T Consensus 124 -----------~~~L~~L~~D~d~--------~VR~~aA~~---l---------------~~~~l~~l~~D~d~~VR~~a 166 (244)
T 1lrv_A 124 -----------LEQLEQMAADRDY--------LVRAYVVQR---I---------------PPGRLFRFMRDEDRQVRKLV 166 (244)
T ss_dssp -----------TGGGGGGTTCSSH--------HHHHHHHHH---S---------------CGGGGGGTTTCSCHHHHHHH
T ss_pred -----------HHHHHHHHcCCCH--------HHHHHHHHh---c---------------CHHHHHHHHcCCCHHHHHHH
Confidence 1223444554443 888877762 1 12345577889999999988
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHH
Q 005088 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (715)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 307 (715)
+.. +. .+.+..++++++..|+..++..+ ..+.|..++.+.++.|
T Consensus 167 a~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~V 210 (244)
T 1lrv_A 167 AKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTV 210 (244)
T ss_dssp HHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHH
T ss_pred HHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHH
Confidence 774 11 23455788899999999888652 2356888899999999
Q ss_pred HHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 005088 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (715)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L 357 (715)
+..++..++ .+.|..+ .++++.||..+...|
T Consensus 211 R~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 211 RLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 999888743 2445455 889999999887654
No 139
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.017 Score=56.09 Aligned_cols=187 Identities=11% Similarity=0.028 Sum_probs=121.1
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchh--HHHh--hcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIV--QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI---- 364 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~--~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~---- 364 (715)
+| +-+-|.+.++..|.+|+..+..+....+... .... -....+.+...+.+.+..++..++.++..++...
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 45 5678889999999999999888765432111 1111 1234567778888999999999999999887643
Q ss_pred --H--HHHHhcCChHHHHH-hhccCChhHHHHHHHHHHhccCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHH
Q 005088 365 --T--AGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 439 (715)
Q Consensus 365 --~--~~l~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~ 439 (715)
. ....-..+++.|+. .+.+....++..+..++..++........
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------------------------------- 139 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------------------------------- 139 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-------------------------------
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-------------------------------
Confidence 1 11122344565654 46778888888888888776532211111
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCccchh---hhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 440 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI---FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 440 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~---~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
+++.++..+.+.+|.++..++..|..+......... ..-...++.+..++.+.++.||..|..++..+.+
T Consensus 140 -------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 140 -------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp -------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 234455556777899999998888887543211110 0001234567788899999999999999988876
Q ss_pred hc
Q 005088 517 KA 518 (715)
Q Consensus 517 ~~ 518 (715)
..
T Consensus 213 ~~ 214 (278)
T 4ffb_C 213 VT 214 (278)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 140
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.28 E-value=0.018 Score=59.09 Aligned_cols=235 Identities=15% Similarity=0.085 Sum_probs=142.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH--cCChHHHHhhhc---------cC-ChHHHHHHHHHHHH
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS---------SC-CSESQREAALLLGQ 317 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~~ll~---------~~-~~~~~~~a~~~L~~ 317 (715)
+.+.|+.-|-++.-++|--|+.+|..+............. ....-.++-++. +. -..||+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 4556666667788999999999999886433210000000 011222222221 11 25689999999999
Q ss_pred HhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHH
Q 005088 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 396 (715)
Q Consensus 318 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 396 (715)
+ ..-+.. ..++..++..+..+.+++|..++-.|..+ ..- .. -.++++.++..|.+.+..|+..|+.+|
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 8 544433 33445555555778999999999999888 111 21 245677788888999999999999999
Q ss_pred HhccCCCchhhHHHhhccccccccchh---hhhhhhhHHHHHHHHH---H--HHHhhhhHHHHHHHHhhhhhhHHHHHHH
Q 005088 397 YGLADNEDNVADFIRVGGVQKLQDGEF---IVQATKDCVAKTLKRL---E--EKIHGRVLNHLLYLMRVAEKGVQRRVAL 468 (715)
Q Consensus 397 ~~l~~~~~~~~~l~~~~~i~~L~~~~~---~~~~~~~~~~~~~~~~---~--~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 468 (715)
.-++ .++....+.. .+++.+. ++......+...+..+ . .......+|+|.++++++-++||.+++.
T Consensus 324 iPIA-~p~~l~~LL~-----iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~ 397 (800)
T 3oc3_A 324 CHFP-ITDSLDLVLE-----KCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILN 397 (800)
T ss_dssp TTSC-CSSTHHHHHH-----HHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHH
T ss_pred hhhc-chhhHHHHHH-----HHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHH
Confidence 9999 3333333222 2222111 1111111111111111 1 0113478899999999999999999999
Q ss_pred HHHhhcCCCccchhhhcCCcHHH-HHHHhcCCCcchhhhhHHHH
Q 005088 469 ALAHLCSPDDQRTIFIDGGGLEL-LLGLLGSTNPKQQLDGAVAL 511 (715)
Q Consensus 469 aL~~l~~~~~~~~~~~~~~~i~~-L~~ll~~~~~~~~~~aa~~L 511 (715)
+|..+. ....++. ..+++-..+++++..+..+-
T Consensus 398 TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 398 MVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 998887 1223443 34666778888877666544
No 141
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.03 E-value=0.16 Score=48.05 Aligned_cols=175 Identities=15% Similarity=0.068 Sum_probs=114.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhh----hccCChHHHHHHHHHHHHHhcC---Ccc
Q 005088 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL----LSSCCSESQREAALLLGQFAAT---DSD 324 (715)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~l----l~~~~~~~~~~a~~~L~~l~~~---~~~ 324 (715)
+.+...+-+.+..-+..++..|......+++.. . ..++.++.+ +.+.+..+...++.+|..+... ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~---~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSL---L--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH---H--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHH---H--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 445556666677777777777777654443321 1 123334443 3366788888887777776421 111
Q ss_pred hhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCC
Q 005088 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 403 (715)
Q Consensus 325 ~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 403 (715)
........-++|.|+.-+.++...+|..+-.++..+..-. .. .+.+.++.-+.++|+.++..++..+..+-..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~- 197 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-----KMTPMLLDALKSKNARQRSECLLVIEYYITN- 197 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh-
Confidence 1111111346799999999999999999988887776433 22 2345677788999999999999999887321
Q ss_pred chhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhH---HHHHHHHhhhhhhHHHHHHHHHHhh
Q 005088 404 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL---NHLLYLMRVAEKGVQRRVALALAHL 473 (715)
Q Consensus 404 ~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~aL~~l 473 (715)
.|. .+ ...+ +.+..++.++|..||.+|..++..+
T Consensus 198 --------~G~-~~---------------------------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 198 --------AGI-SP---------------------------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp --------HCS-GG---------------------------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred --------cCC-Cc---------------------------cccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 221 11 1135 7788899999999999999998866
No 142
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.76 E-value=0.049 Score=49.87 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=99.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHh-hhccCChHHHHHHHHHHHHHhc-CCcchhHH
Q 005088 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVH 328 (715)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 328 (715)
++....+.+++..++|..|+..|+.+ .... ..++.+.. +..+.+..|+..++.++..++. .+++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 44555677778889999999999888 3211 14566666 5557789999999999999984 33332
Q ss_pred HhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHHHHHh-cCChHHHHHhhccCChhHHHHHHHHHHhccCC-Cchh
Q 005088 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNV 406 (715)
Q Consensus 329 ~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~ 406 (715)
.++.+..+..++++.+|+.|...+.-.+... ....+ .-+++.+-.+..+++.-||....+.|..++.. |+-.
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGST-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 5688899999999999999988875433211 00001 11344455555788999999999999999875 4444
Q ss_pred hHHHh
Q 005088 407 ADFIR 411 (715)
Q Consensus 407 ~~l~~ 411 (715)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.47 E-value=0.36 Score=44.17 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=90.0
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc-cCccchhHHHhcCCc
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGI 209 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i 209 (715)
++|..|+..|+.+. + . ...++.+...+..... +.+++.++.++..+|. .+++ ..+
T Consensus 86 eVR~~Av~lLg~~~--~-~------~~~L~~ir~~va~D~~-------WrVre~lA~a~~~~~~~~~pe--------~~l 141 (240)
T 3l9t_A 86 QVRMYAVFLFGYLS--K-D------KEILIFMRDEVSKDNN-------WRVQEVLAKAFDEFCKKIEYK--------KAL 141 (240)
T ss_dssp HHHHHHHHHHHHTT--T-S------HHHHHHHHHTGGGCSC-------HHHHHHHHHHHHHHHHHHCTT--------TTH
T ss_pred HHHHHHHHHHHhcc--C-c------HHHHHHHHHHhCCCCC-------ccHHHHHHHHHHHHHHhcCHH--------HHH
Confidence 99999999888772 1 1 1124444443333322 6999999999999985 3443 256
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 005088 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (715)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (715)
+.+...+.+++..+|+.|+..+..-+.. +..+.. ..-+++.|-.+..+++.-|+....+.|..++..+|+....+++
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 7888999999999999999887543321 111000 0114566666777889999999999999999999886555443
No 144
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.11 E-value=1.5 Score=42.53 Aligned_cols=167 Identities=11% Similarity=0.063 Sum_probs=96.7
Q ss_pred HHHhhHHHHHHhhcCChhhHHHHHhcCChHHHHH-HHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhc--C
Q 005088 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--G 207 (715)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--g 207 (715)
+.+.-++..+.-+.-++.....+...+.-..++. ++....+.. . ...+-.+++++.|+.. ++..+..+... .
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~-~---p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~ 191 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKG-K---PANQLLALRTFCNCFV-GQAGQKLMMSQRES 191 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS-C---HHHHHHHHHHHHHGGG-SHHHHHHHHHTHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCC-C---hHHHHHHHHHHHHccC-CchhHHHHHHHHHH
Confidence 5566777777777777766666554433344442 322211111 1 1457888999999876 55555544431 2
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
.++.+...+.+++..++..++..+.|++......+..-....++..+..+++. .+.+....++-+|++|....++..+.
T Consensus 192 il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 192 LMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence 33445555556788999999999999996211100000001134455555544 48899999999999998776554443
Q ss_pred HHHcCChHHHHhhhcc
Q 005088 287 VLAAGALQPVIGLLSS 302 (715)
Q Consensus 287 ~~~~g~l~~L~~ll~~ 302 (715)
....|.-..+-.....
T Consensus 272 ak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 272 AKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHTTHHHHGGGGGGC
T ss_pred HHHcCHHHHHHHHHhC
Confidence 3334444444444443
No 145
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.60 E-value=0.019 Score=46.61 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=66.8
Q ss_pred EEEEecCeeecchHHHHhhccH-HHHHhhcCCC-CCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH-HHHHHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAAD 626 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A~ 626 (715)
|.+-|+|..|...+..|..... +|..||.+.. .....+.+-+ |=++..|+.+|.|+.+|++.++.+ ....+++-|+
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~ 85 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE 85 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH
Confidence 6788999999999999986633 4556665422 1123345554 568999999999999999976543 4678999999
Q ss_pred HhChhhHH--HHHHHHHHhc
Q 005088 627 QYLLEGLK--RLCEYTIAQD 644 (715)
Q Consensus 627 ~~~~~~L~--~~~~~~l~~~ 644 (715)
+|+++... ..|.......
T Consensus 86 fy~i~~~~l~~CC~~~~~~~ 105 (115)
T 3kvt_A 86 FWGLDSNQVEPCCWMTYTAH 105 (115)
T ss_dssp HHTCCGGGBCGGGSHHHHSC
T ss_pred HhCCChHHHHHHHHHHHHhc
Confidence 99998754 3354444443
No 146
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=94.53 E-value=0.047 Score=44.91 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=63.3
Q ss_pred cEEEEecCeeecchHHHHhhccHHHHHhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH-HHHHHHH
Q 005088 549 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLR 623 (715)
Q Consensus 549 d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~ 623 (715)
-|.+-|+|..|..-+..|..... .++... +.....+.+-+ |-++..|+.+|.|+-+|++.++.+ .+..+++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 37788999999999999975432 233221 11122345555 559999999999999999986543 4788999
Q ss_pred HHHHhChhhHH--HHHHHHH
Q 005088 624 AADQYLLEGLK--RLCEYTI 641 (715)
Q Consensus 624 ~A~~~~~~~L~--~~~~~~l 641 (715)
-|++|+++.+. ..|....
T Consensus 90 Ea~fy~i~~l~l~~cC~~~~ 109 (124)
T 1s1g_A 90 ELAFYGILPEIIGDCCYEEY 109 (124)
T ss_dssp HHHHTTCCGGGBCHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHH
Confidence 99999999873 4454443
No 147
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.97 E-value=0.35 Score=46.34 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHHhcCCh
Q 005088 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159 (715)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~l 159 (715)
...+...|.-+..++....-+++.+++..+...++.++. ++....++.|...++....+..- -.+.+
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~------------~l~RaG~KLLLQVSDaksL~~t~-L~e~L 326 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN------------DLIRAGCKLLLQVSDAKALAKTP-LENIL 326 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHHHHTTCGGGGTSC-CTTHH
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc------------HHHHhhhheeeeecchHHHhhcc-ccccc
Confidence 344555555555578888889999999999999999988 99999999999988665443221 12468
Q ss_pred HHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccC-------CHHHHHHHHHHHH
Q 005088 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-------DTKVQRAAAGALR 232 (715)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~v~~~a~~~L~ 232 (715)
|.++..+....++ ++.....+.|+|...+....++.....|+++.|-..+... +..-+..||++++
T Consensus 327 PFi~~~i~~h~eD-------dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Iic 399 (619)
T 3c2g_A 327 PFLLRLIEIHPDD-------EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIIC 399 (619)
T ss_dssp HHHHHHHHHCCCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHH
T ss_pred hHHHHHhccCCCc-------ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHH
Confidence 9999998866553 9999999999999999999999888899999988876432 2344556666666
Q ss_pred HHh
Q 005088 233 TLA 235 (715)
Q Consensus 233 ~L~ 235 (715)
|..
T Consensus 400 N~L 402 (619)
T 3c2g_A 400 NCL 402 (619)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 148
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.90 E-value=2.6 Score=48.74 Aligned_cols=318 Identities=9% Similarity=0.089 Sum_probs=153.0
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHH-HhhhcCCCCcccccCCCccchHHHhhHH
Q 005088 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (715)
Q Consensus 59 v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L-~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (715)
.+.+++.+...+... .++++...++.+|....+--. ...++..+.++.+ ..+|. ++ +++..|+
T Consensus 204 ~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~--~~------------~~r~aA~ 267 (1073)
T 3gjx_A 204 FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP-LGYIFETKLISTLIYKFLN--VP------------MFRNVSL 267 (1073)
T ss_dssp CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSS--SH------------HHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcC--Ch------------HHHHHHH
Confidence 455555555544322 345566778888888877322 1356778888887 46663 23 8999999
Q ss_pred HHHHhhc-C-ChhhHHHHH--hcCChHHHHHHHccccCC-----CcchhhhHHHHHHHHHHHHHhccC-------ccchh
Q 005088 138 FALGLLA-V-KPEHQQLIV--DNGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAHEN-------SSIKT 201 (715)
Q Consensus 138 ~~L~~l~-~-~~~~~~~i~--~~~~l~~L~~lL~~~~~~-----~~~~~~~~~~~~a~~~L~~L~~~~-------~~~~~ 201 (715)
.+|..+. . .++....+. -.+.+..+-.++.....- .....+.+.....+.++..+...+ ++.+.
T Consensus 268 dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~ 347 (1073)
T 3gjx_A 268 KCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLRE 347 (1073)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchH
Confidence 9999988 3 333222221 111222222222111000 000011255555666666554311 11111
Q ss_pred HHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc----CCh-----h------------hHHHHHh---CCChHHHHHh
Q 005088 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF----KND-----E------------NKNQIVE---CNALPTLILM 257 (715)
Q Consensus 202 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~----~~~-----~------------~~~~~~~---~g~l~~L~~l 257 (715)
.+ ..++..++.+...++.++.+.+...=..|.. ..+ . .+..+.. ..+...++.-
T Consensus 348 ~l--~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~ 425 (1073)
T 3gjx_A 348 AL--MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSR 425 (1073)
T ss_dssp HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 11 1133445555567788877766654333332 110 0 0111100 0112222222
Q ss_pred hcCCC--------------------H-----HHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc--CChHHHHH
Q 005088 258 LRSED--------------------S-----AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQRE 310 (715)
Q Consensus 258 l~~~~--------------------~-----~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~ 310 (715)
+..++ . .+.+.++..+.++ .......+ .++.+.+.+.. .++.....
T Consensus 426 m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l---~~~~~~~i----~~~~l~~~~~~~~~sW~~lea 498 (1073)
T 3gjx_A 426 MAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL---DYVDTEII----MTKKLQNQVNGTEWSWKNLNT 498 (1073)
T ss_dssp CCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH---CHHHHHHH----HHHHHHHHHTSCCCCHHHHHH
T ss_pred cCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcC---CHHHHHHH----HHHHHHHHhcCCCCCHHHHhH
Confidence 22111 1 1223333334443 12211111 22333333332 35888999
Q ss_pred HHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCC-----CHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccC
Q 005088 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-----DVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSK 384 (715)
Q Consensus 311 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-----~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~ 384 (715)
++|+++.++..-......-.-..+++.|+.+.... .+.++...+++++..+.-- ...-.-...+..+++.+++.
T Consensus 499 ~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~ 578 (1073)
T 3gjx_A 499 LCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHET 578 (1073)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence 99999999743222111111123456666655332 2234445556776665433 11111123445566667888
Q ss_pred ChhHHHHHHHHHHhccC
Q 005088 385 NGSLQHNAAFALYGLAD 401 (715)
Q Consensus 385 ~~~v~~~a~~~L~~l~~ 401 (715)
++.|+..|+.++..++.
T Consensus 579 ~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp STTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999974
No 149
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.28 E-value=0.83 Score=44.33 Aligned_cols=135 Identities=12% Similarity=0.039 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHH
Q 005088 219 TDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (715)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L 296 (715)
..+..+..++++++|+-. ++..+..+... .+++.+...+.+++..++..+...+.|++.........-....++..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 346668899999999996 56666665542 344555555566789999999999999975311100000011134444
Q ss_pred Hhhhcc-CChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHH
Q 005088 297 IGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSA 354 (715)
Q Consensus 297 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~ 354 (715)
..++.. .+.+....++.+|+++...+++.+......++-..+-..... ..+.|.+.|-
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence 555543 468899999999999987654443333333443334344443 3455554443
No 150
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=93.17 E-value=0.062 Score=45.18 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=63.7
Q ss_pred ccEEEEecCeeecchHHHHhhccHHHHHhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH-HHHHHH
Q 005088 548 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLL 622 (715)
Q Consensus 548 ~d~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll 622 (715)
.-|.+.|+|..|...+..|....+ .|+... +.....+.+-+ |-++..|+.+|+|+-+|++.++.+ .+..++
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~ 110 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYD 110 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHH
T ss_pred CEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHH
Confidence 347788999999999999975432 233321 11122344554 559999999999999999986543 478899
Q ss_pred HHHHHhChhhHH--HHHHHHHH
Q 005088 623 RAADQYLLEGLK--RLCEYTIA 642 (715)
Q Consensus 623 ~~A~~~~~~~L~--~~~~~~l~ 642 (715)
+-|++|+++.+. ..|.....
T Consensus 111 eEa~fy~i~~l~l~~CC~~~~~ 132 (140)
T 2nz0_B 111 DELAFYGILPEIIGDCCYEEYK 132 (140)
T ss_dssp HHHHHHTCCGGGBCTTTHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHH
Confidence 999999999873 34444443
No 151
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.15 E-value=1.7 Score=41.72 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=96.3
Q ss_pred HhhHHHHHHhhcCChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
...+...|+-|..+....+-++..+++..+...+..++. ++.+..+..|...+....-+. .--...+|.+
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--------~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi 329 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--------DLIRAGCKLLLQVSDAKALAK--TPLENILPFL 329 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHH
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc--------HHHHhhhheeeeecchHHHhh--ccccccchHH
Confidence 334455555555777778888899999999999988776 899999999998874221111 1123456777
Q ss_pred HHhhc-cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC-------CCHHHHHHHHHHHHHh
Q 005088 213 VELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNL 276 (715)
Q Consensus 213 ~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-------~~~~v~~~a~~~L~~L 276 (715)
+..+. +++.++.....+.|.|...+....++..+..|++..|...+.. .+..-+..+|.+++|-
T Consensus 330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 77775 6788999999999999998888888888999999999886543 1333445555555543
No 152
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=92.33 E-value=0.043 Score=43.74 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=60.9
Q ss_pred EEEEecCeeecchHHHHhhccHHHHHhhcCCC----CCCCCCceecCCCCHHHHHHHHHHHhcCCcccCHH-HHHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA 624 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~ 624 (715)
|.+-|+|..|...+..|..... .|+.... .....+.+-+ |=++..|+.+|.|+-+|++.++.+ .+..+.+-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6788999999999999975432 2333210 0112234444 558999999999999999886543 46889999
Q ss_pred HHHhChhhHH--HHHHHH
Q 005088 625 ADQYLLEGLK--RLCEYT 640 (715)
Q Consensus 625 A~~~~~~~L~--~~~~~~ 640 (715)
|++|+++.+. ..|...
T Consensus 78 a~fy~i~~l~~~~cc~~~ 95 (105)
T 1nn7_A 78 LAFFGLIPEIIGDCCYEE 95 (105)
T ss_dssp HHHHTCCSCCBCHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 9999998863 445443
No 153
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.01 E-value=5 Score=46.69 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=101.4
Q ss_pred hHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHh----ccCccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHH
Q 005088 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA----HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (715)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (715)
+..+..+++....... ..++..++-+++.+. ..++.+....+ ......+.+.+...+.+-+..++.+|+|+
T Consensus 393 l~~~~~l~~~~~~~~~----~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNR----PILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTC----HHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccC----HHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 5556667665431100 145555555555554 33332221111 11222334444566777788999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhc--cCCh
Q 005088 235 AFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCS 305 (715)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~--~~~~ 305 (715)
.. + ..++.|.+++.. ....++..|+++|.+++...+... -+.++++.. ..++
T Consensus 468 g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 468 GQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKS 528 (1056)
T ss_dssp TC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCH
T ss_pred CC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCCh
Confidence 84 3 246667676632 245788999999999976655432 334667774 3568
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHH
Q 005088 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQV 363 (715)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~ 363 (715)
++|..|+..|... +|.. ..+..+...+.. .+..|.......|.+++..
T Consensus 529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 8988888877653 2221 135666666655 7788887777777777643
No 154
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.48 E-value=1.2 Score=44.88 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=94.4
Q ss_pred cCChHHHHHHhC-----------CCCHHHHHHHHHHHHHhHHHH---HHHHHhcCChHHHHHhhccCChhHHHHHHHHHH
Q 005088 332 RGAVRPLIEMLQ-----------SPDVQLREMSAFALGRLAQVI---TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 397 (715)
Q Consensus 332 ~~~l~~L~~~L~-----------~~~~~v~~~a~~~L~~l~~~~---~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 397 (715)
.+++..|+.+|. ..+......++.||..+.... ...+.....+..+...+.+.++.++..++..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455666666662 124567788888888887666 444445577899999999999999999999999
Q ss_pred hccCCCc--h-hhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhhhHHHHHHHHHHhh
Q 005088 398 GLADNED--N-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHL 473 (715)
Q Consensus 398 ~l~~~~~--~-~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~aL~~l 473 (715)
.+|..++ + ...+.+ ++..........-+..++..+.. .+.+.+.++...+..+
T Consensus 188 ~lc~~~~~~gG~~~VL~-----------------------Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLE-----------------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHTCCSSTTHHHHHHH-----------------------HHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCcCcCCcHHHHHH-----------------------HHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 9887653 2 222222 11122222233456667777776 4677888777777777
Q ss_pred cCCCc-------cchhhhcCCcHHHHHHHhcCCCcch
Q 005088 474 CSPDD-------QRTIFIDGGGLELLLGLLGSTNPKQ 503 (715)
Q Consensus 474 ~~~~~-------~~~~~~~~~~i~~L~~ll~~~~~~~ 503 (715)
...++ -+..+...|..+.+..+-..+++.+
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 66543 3445555566666665444444443
No 155
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.31 E-value=3.9 Score=41.67 Aligned_cols=122 Identities=17% Similarity=0.098 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHH
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~ 297 (715)
.++....+-|+..|.......|+.... ++..++.++.+++..||..|++.|..+|.+ +... .+.++|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHH
Confidence 356888999999999998888887654 467789999999999999999999999876 3323 3468899
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 005088 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (715)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~ 359 (715)
++|+..++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999988765555555555555443332 234445555544678888887777653
No 156
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.29 E-value=4.2 Score=37.70 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=100.4
Q ss_pred ChhhHHHHHhcCChHHHHHHHccccCCCcc---hhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHH
Q 005088 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222 (715)
Q Consensus 146 ~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 222 (715)
.......+ ..+|+..|+.+|......... +...+....++.||..+..........+...+++..+...+.++++.
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 33444555 457788888888754321110 11346778889999998854444444455567788999999999999
Q ss_pred HHHHHHHHHHHHhcCCh-hh-HHHH----------HhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------H
Q 005088 223 VQRAAAGALRTLAFKND-EN-KNQI----------VECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------I 283 (715)
Q Consensus 223 v~~~a~~~L~~L~~~~~-~~-~~~~----------~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~------~ 283 (715)
++..++..|..+|.-.. .. ...+ .+..-...++..+.+ .+.+.+..++..+..+....++ .
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 191 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 191 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999988886432 12 2222 223355667777764 4667777777777777655443 2
Q ss_pred HHHHHHcCChHHHHhhhccCChHHHH
Q 005088 284 KKEVLAAGALQPVIGLLSSCCSESQR 309 (715)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~~~~~~~~ 309 (715)
+..+...|+.+.+-.+=...++++..
T Consensus 192 R~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 192 RSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHCChHHHHHHHhccCCHHHHH
Confidence 34444566655554443334444433
No 157
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=91.17 E-value=0.095 Score=41.17 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=58.8
Q ss_pred EEEEecCeeecchHHHHhhccH-HHHHhhcCC-CCCCCCCceecCCCCHHHHHHHHHHHhc-CCcccCHH-HHHHHHHHH
Q 005088 550 VTFLVEGRRFYAHRICLLASSD-AFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA 625 (715)
Q Consensus 550 ~~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~ll~~A 625 (715)
|.+-|+|..|...+..|...-. .+.+|+... ......+.+-+ |=++..|+.+|.|+-+ |++..+.+ .+..+.+-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6788999999999999865421 223333211 11123345555 5589999999999998 88876433 467899999
Q ss_pred HHhChhhHH
Q 005088 626 DQYLLEGLK 634 (715)
Q Consensus 626 ~~~~~~~L~ 634 (715)
++|+++.+.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999998865
No 158
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.91 E-value=3.6 Score=38.13 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHH-HcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCc-ch-hHHHh--------
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DC-KVHIV-------- 330 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~-------- 330 (715)
+......++.||..+....... ..+. ..+.+..+...|.+..+.++..++..|..+|.... +. ...+.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~-~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGI-KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHH-HHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHH-HHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 4567888999999986543333 4444 46788999999998899999999999998886543 12 22221
Q ss_pred --hcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---------HHHHHhcCChHHHHHhhccCChhHH
Q 005088 331 --QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---------TAGIAHNGGLVPLLKLLDSKNGSLQ 389 (715)
Q Consensus 331 --~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---------~~~l~~~~~l~~L~~ll~~~~~~v~ 389 (715)
+..-+..+++.+++ .+.+.+..+...+..+.... +..+...|..+.+-.+-...++.+.
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 216 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHH
Confidence 22345667777764 55666666555555554433 5566666666665544444555443
No 159
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.41 E-value=4.3 Score=40.83 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=92.4
Q ss_pred HHHHHhCCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHH
Q 005088 242 KNQIVECNALPTLILMLR-----------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (715)
Q Consensus 242 ~~~~~~~g~l~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~ 310 (715)
...+. .+|+..|+.+|. ..+......++.||..+..........+.....+..+...+.+..+.++..
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 33444 456677776663 124577888999999986543333333334678899999999999999999
Q ss_pred HHHHHHHHhcCCc-ch-hHHHh----------hcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---------HHHH
Q 005088 311 AALLLGQFAATDS-DC-KVHIV----------QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---------TAGI 368 (715)
Q Consensus 311 a~~~L~~l~~~~~-~~-~~~~~----------~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---------~~~l 368 (715)
++..|..+|.... .. ...+. +..-+..++..|.+ .+.+.+..+...+..+.... +..+
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999986543 22 22222 23446778888876 56777766666555555443 5566
Q ss_pred HhcCChHHHHHhhccCChhH
Q 005088 369 AHNGGLVPLLKLLDSKNGSL 388 (715)
Q Consensus 369 ~~~~~l~~L~~ll~~~~~~v 388 (715)
...|..+.+-.+=...++.+
T Consensus 262 ~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 262 MRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HHTTHHHHHHHHTTSCCHHH
T ss_pred HHCChHHHHHHHhcCCChhH
Confidence 66666666655333344443
No 160
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=88.63 E-value=13 Score=44.13 Aligned_cols=297 Identities=11% Similarity=0.027 Sum_probs=152.1
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHH
Q 005088 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (715)
Q Consensus 62 lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (715)
+...+....+.. .+...+.+|-..|..+..+++ +...+...|.+.+. +..+|..|+.+|.
T Consensus 13 l~~~l~~~~~p~-~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~----------~~~vR~~A~~~Lk 72 (1204)
T 3a6p_A 13 LVKAVTVMMDPN-STQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQ----------VAIVRHFGLQILE 72 (1204)
T ss_dssp HHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTS----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCC----------CHHHHHHHHHHHH
Confidence 444444443321 244457777777776654432 23334443432222 2389999999999
Q ss_pred hhc-C-----ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccC-ccchhHHHhcCCcHHHHH
Q 005088 142 LLA-V-----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVE 214 (715)
Q Consensus 142 ~l~-~-----~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ 214 (715)
+.. . .++.+..+. ..++..+....... ...+..++...+.++..++... +... .+.++.|+.
T Consensus 73 ~~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~-~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~ 141 (1204)
T 3a6p_A 73 HVVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNI-LEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDT 141 (1204)
T ss_dssp HHHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCT-TSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHH-----HHHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHH
Confidence 876 2 233333332 23444444331100 0001278888888888888532 2111 245677777
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCCh------hhHH-----HHHhC--CChHHHHHhhcC-------------------CC
Q 005088 215 LLEFTDTKVQRAAAGALRTLAFKND------ENKN-----QIVEC--NALPTLILMLRS-------------------ED 262 (715)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~------~~~~-----~~~~~--g~l~~L~~ll~~-------------------~~ 262 (715)
++.+ ++.....++.+|..|+.+.. ..+. .+.+. .+++.+..++.+ .+
T Consensus 142 ~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~ 220 (1204)
T 3a6p_A 142 LSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQAN 220 (1204)
T ss_dssp HHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHH
T ss_pred HhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhh
Confidence 7765 55667888889998875310 1111 12211 122233333322 12
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHcC--ChHHHHhhhccCChHHHHHHHHHHHHHhcCC--cchhHHHhh---cCCh
Q 005088 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATD--SDCKVHIVQ---RGAV 335 (715)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~---~~~l 335 (715)
..++..++.++.+....-+. ..+.+.. .++.+..++. +++++..|+.+|..++... +..+..++. ...+
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l 296 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAM 296 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHH
T ss_pred HHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHH
Confidence 34666677777665433221 2223322 6677776665 4678899999999998644 222222222 1113
Q ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHHhHHHHHHHHHh------c----CChHHHHHhhccCChhHHHHHHH
Q 005088 336 RPLIEMLQ--------SPDVQLREMSAFALGRLAQVITAGIAH------N----GGLVPLLKLLDSKNGSLQHNAAF 394 (715)
Q Consensus 336 ~~L~~~L~--------~~~~~v~~~a~~~L~~l~~~~~~~l~~------~----~~l~~L~~ll~~~~~~v~~~a~~ 394 (715)
..++..+. +.+.++.+..+..+..++......+.+ . +.++.++.+..+++..+...++.
T Consensus 297 ~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~ 373 (1204)
T 3a6p_A 297 HYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQM 373 (1204)
T ss_dssp HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHH
Confidence 34555442 123566677777777776433221111 1 33555555556666555555444
No 161
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.41 E-value=3.9 Score=41.61 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHH
Q 005088 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (715)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 340 (715)
+++..+.-|...|......-|+.... ++..++++..+.+..+|..|...|..+|.. +... .+...|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHH
Confidence 47889999999999998888887555 577899999999999999999999999864 3322 34678999
Q ss_pred HhCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhccCChhHHHHHHHHHHh
Q 005088 341 MLQSPDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 398 (715)
Q Consensus 341 ~L~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 398 (715)
+|...++.-....-.+|..+...+ -.+.+..+...+..++..+|..++..|..
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~D-----pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMD-----AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999988877777777777665544 11233444444444678888888777754
No 162
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.94 E-value=11 Score=43.79 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=60.7
Q ss_pred hHHHHhhhcc----CChHHHHHHHHHHHHHhc----CCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH
Q 005088 293 LQPVIGLLSS----CCSESQREAALLLGQFAA----TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (715)
Q Consensus 293 l~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~ 364 (715)
+..+..++.+ .++.++..+..+++.+.. ..+.+...++ ..+...+.+.+...+..-+..++.+|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 3445555543 346677777776666653 2222211111 1123344455566777788899999999863
Q ss_pred HHHHHhcCChHHHHHhhcc-------CChhHHHHHHHHHHhccCC
Q 005088 365 TAGIAHNGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADN 402 (715)
Q Consensus 365 ~~~l~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~ 402 (715)
...++.|..++.. ....++..|+++|.+++..
T Consensus 470 ------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 470 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred ------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 2356677777632 2356888999999999744
No 163
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.53 E-value=19 Score=42.61 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhh--ccCChHHHHHHHHHHHHHhcCC----cchhHHHhhcCCh
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATD----SDCKVHIVQRGAV 335 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~l 335 (715)
+...+..|-..|.++.... .+...+...| .+.+..+|..|+.+|.+..... +......++..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 6678888888887773322 1333333333 3446788999999999876321 2222223333334
Q ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCCCchhhHHHh
Q 005088 336 RPLIEMLQ---SPDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 411 (715)
Q Consensus 336 ~~L~~~L~---~~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 411 (715)
..+..... ...+.++...+.++..++... ...+ .+.++.+++++.+ ++..+..++.+|..++..-. .
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W--p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~------~ 166 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW--PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVV------T 166 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH------T
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc--hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHc------c
Confidence 44333211 146889999999999998776 3221 3567788888765 45567778888888763210 0
Q ss_pred hccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhh-------------------hhhhHHHHHHHHHHh
Q 005088 412 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------------------AEKGVQRRVALALAH 472 (715)
Q Consensus 412 ~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-------------------~~~~v~~~a~~aL~~ 472 (715)
.+.... .........+... -..++..+..++.. .+..+...++.++.+
T Consensus 167 ~~~~~~-----~r~~~l~~~l~~~--------~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 167 FQTLPP-----QRRRDIQQTLTQN--------MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp SCCSCH-----HHHHHHHHHHHHT--------HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHH-----HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 000000 0000000000000 01122222222222 345677888888887
Q ss_pred hcCCCccchhhhcC-CcHHHHHHHhcCCCcchhhhhHHHHHHhhhhc
Q 005088 473 LCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 518 (715)
Q Consensus 473 l~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~~~ 518 (715)
....-.....+... ..++.+..++. +++++..|+.||..+.+..
T Consensus 234 ~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 234 YIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 76654433332221 26677776554 6789999999999999864
No 164
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.71 E-value=13 Score=43.14 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=134.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc-CChHHHHHHHHHHHHHhcCC----cch
Q 005088 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATD----SDC 325 (715)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~----~~~ 325 (715)
++.++..+.+++++.+..|-..|..+-. +++ +...+..+|.. .++.++..|+.+|.+..... +..
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 4556666666777888888888888743 333 23344455543 46889999999999876531 222
Q ss_pred hHHHhhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHhHHHH-HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhc
Q 005088 326 KVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVI-TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 399 (715)
Q Consensus 326 ~~~~~~~~~l~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 399 (715)
....++..++..+.....+ .++.++...+.++..++... ...+ .+.++.++..+.+ ++......+.+|..+
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W--p~fi~dLv~~~~~-~~~~~~~~L~IL~~L 176 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW--PTFISDIVGASRT-SESLCQNNMVILKLL 176 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc--cHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2333334455555554332 35677788888888888765 2221 3566667776653 344556677777776
Q ss_pred cCCCchhhHHHhhccccccccchhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhhhHHHHHHHHHHhhcCCCc
Q 005088 400 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD 478 (715)
Q Consensus 400 ~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~ 478 (715)
...-.....- + + ...+ .......+.. .-..+++.+..++.. .++++...++.+|..+..+-+
T Consensus 177 ~EEV~d~~~~-~------l-------~~~r--~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~ 239 (1073)
T 3gjx_A 177 SEEVFDFSSG-Q------I-------TQVK--AKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP 239 (1073)
T ss_dssp HHHHTTSHHH-H------B-------CHHH--HHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhcccc-c------c-------cHHH--HHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 5321000000 0 0 0000 0000000111 012234444444544 367788888999999988765
Q ss_pred cchhhhcCCcHHHH-HHHhcCCCcchhhhhHHHHHHhhhh
Q 005088 479 QRTIFIDGGGLELL-LGLLGSTNPKQQLDGAVALFKLANK 517 (715)
Q Consensus 479 ~~~~~~~~~~i~~L-~~ll~~~~~~~~~~aa~~L~~L~~~ 517 (715)
... +...+.++.| ..++ +++..+..|+.||..+.+.
T Consensus 240 i~~-i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 240 LGY-IFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp THH-HHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHH-hccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 443 3466778877 4555 4678999999999998875
No 165
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.58 E-value=10 Score=38.09 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=99.2
Q ss_pred hhHHHHHhcCChHHHHHHHccccCCCcc---hhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHHHHhhccCCHHHH
Q 005088 148 EHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQ 224 (715)
Q Consensus 148 ~~~~~i~~~~~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 224 (715)
.....+. .+|+..|+.+|......... +........++.||..+..........+...+++..+...+.++++.++
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r 117 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 117 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 3333443 45677777777643221110 1234777888999999885444444455556788899999998899999
Q ss_pred HHHHHHHHHHhcCCh-hh-HHHH----------HhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------HHH
Q 005088 225 RAAAGALRTLAFKND-EN-KNQI----------VECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IKK 285 (715)
Q Consensus 225 ~~a~~~L~~L~~~~~-~~-~~~~----------~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~------~~~ 285 (715)
..++..|..+|.... .. ...+ .+..-...++..+.. .+.+.+..++..+..+....++ .+.
T Consensus 118 ~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~ 197 (386)
T 2bnx_A 118 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 197 (386)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999988886432 22 2222 223455667777764 4667777777777777655543 234
Q ss_pred HHHHcCChHHHHhhhccCChHHHHH
Q 005088 286 EVLAAGALQPVIGLLSSCCSESQRE 310 (715)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~ 310 (715)
.+...|+.+.+-.+-...++++..+
T Consensus 198 Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 198 ELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHCChHHHHHHHhccCChhHHHH
Confidence 4555666665544433344554433
No 166
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.53 E-value=8.8 Score=38.65 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCc-ch-hHHHh---------
Q 005088 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DC-KVHIV--------- 330 (715)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~--------- 330 (715)
+......++.||..+..........+...+++..+...+.+..+.++..++..|..+|.... +. ...+.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45678889999999865444443334446788999999988889999999999988886543 22 22211
Q ss_pred -hcCChHHHHHHhCC-CCHHHHHHHHHHHHHhHHHH---------HHHHHhcCChHHHHHhhccCChhHHH
Q 005088 331 -QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVI---------TAGIAHNGGLVPLLKLLDSKNGSLQH 390 (715)
Q Consensus 331 -~~~~l~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~---------~~~l~~~~~l~~L~~ll~~~~~~v~~ 390 (715)
+..-+..+++.+.. .+.+.+..+...+..+.... +..+...|..+.+-.+-...++.+..
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 22355667777764 55666666555555554443 56666667666665544445555433
No 167
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.69 E-value=33 Score=32.68 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhh
Q 005088 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (715)
Q Consensus 56 ~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (715)
...-..+.+++.+.-...+++.+....|+..|-.++.+-.+-..+.... ...|-.++..... ++.+++.
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~----------~~~~rE~ 89 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL----------PLTLREL 89 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS----------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC----------ChhHHHH
Confidence 3444455566665412233466678899999999999877766666533 4555555533222 2389999
Q ss_pred HHHHHHhhc-CChhhHHHHHhc--CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCCcHHH
Q 005088 136 SAFALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (715)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~--~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 212 (715)
|+++++... ++|.....+... ..+..+..-|......... ....++..-+.+|.-|...... + ...++..|
T Consensus 90 aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~-~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L 163 (315)
T 3qml_C 90 STRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHR-SSNILIKRYLSILNELPVTSED----L-PIYSTVVL 163 (315)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHSCCCSTT----C---CCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHhcChHh----h-hhccHHHH
Confidence 999999988 999888877753 3333333333221110000 0126777778888888864422 2 24577888
Q ss_pred HHhhccC--CHHHHHHHHHHHHHHh
Q 005088 213 VELLEFT--DTKVQRAAAGALRTLA 235 (715)
Q Consensus 213 ~~ll~~~--~~~v~~~a~~~L~~L~ 235 (715)
..++... ++.++..++..+..+-
T Consensus 164 ~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 164 QNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHc
Confidence 8888766 8888888888777665
No 168
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.76 E-value=12 Score=35.69 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHh--cCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHH
Q 005088 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLI 255 (715)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~l~~L~ 255 (715)
+....++..|..++. +...-..+.. ...+..|+ +.....+.+++.|..+|....+.||.....+.+ ..++..++
T Consensus 43 ~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 566777778877774 3333333332 22333344 334456789999999999999999988777665 34555555
Q ss_pred HhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--ChHHHHHHHHHHHHHh
Q 005088 256 LMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFA 319 (715)
Q Consensus 256 ~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~ 319 (715)
.-|.. ....+++.-+.+|..|...+... ...++..|..++... ++.++..++..+..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 43332 24467778888898887664322 244667788887766 7888888888777764
No 169
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=78.79 E-value=2.5 Score=33.62 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+|+..++..|..|+.+.|++.|.+|+.++
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999876
No 170
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.99 E-value=4.8 Score=31.72 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCcccCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC
Q 005088 609 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 645 (715)
Q Consensus 609 ~~~~~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i 645 (715)
+.-.++++|...++.+|+.|+.++|...|..++..++
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999987754
No 171
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=69.48 E-value=73 Score=29.67 Aligned_cols=199 Identities=12% Similarity=0.103 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHhc--ChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHH
Q 005088 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (715)
Q Consensus 55 ~~~~v~~lv~~L~~~l~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (715)
....-.+++++|.+.-... + +.+...+.-...++- ++..-. ..++.++++..+.+. ++
T Consensus 10 ~~~~~~~v~~lln~A~~~~--~-~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~------------~v 69 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIAS--P-STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNM------------EV 69 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCC--H-HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCH------------HH
T ss_pred cccHHHHHHHHHHHhhhcC--c-HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChH------------HH
Confidence 4455566777787775533 2 356777777777655 344322 246778887666544 99
Q ss_pred HhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhc-------cCccc----h
Q 005088 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSSI----K 200 (715)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-------~~~~~----~ 200 (715)
|...+..+...+ ..++.... +++.|..++++.+. .+...++.+..++-. .++.. .
T Consensus 70 rk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~ 136 (257)
T 3gs3_A 70 RKQVVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE 136 (257)
T ss_dssp HHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 999999999998 66554333 46777778875433 677766665555431 12211 1
Q ss_pred hHHH-hcCCcHHHHHhhccCCHHHHHHHHHHHHHHhc----CChh---------------h-----HHHHH--hCCChHH
Q 005088 201 TRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAF----KNDE---------------N-----KNQIV--ECNALPT 253 (715)
Q Consensus 201 ~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~----~~~~---------------~-----~~~~~--~~g~l~~ 253 (715)
...- -...-..++.+..+.+..++..|+..+-.+.. .++. + ...+- ..+.+..
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~ 216 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDI 216 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHH
Confidence 1000 01122356667778889999999988877552 1111 0 11111 1244566
Q ss_pred HHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHH
Q 005088 254 LILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKE 286 (715)
Q Consensus 254 L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (715)
|+.++.++ +......++.+|..++...|.....
T Consensus 217 LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~r 251 (257)
T 3gs3_A 217 LLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGA 251 (257)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 66665554 3334556667777776655554333
No 172
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=66.34 E-value=11 Score=30.79 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=29.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+++..++..|..|+.+.|.+.|.+|+.++
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 57889999999999999999999999998753
No 173
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=65.93 E-value=5.9 Score=32.93 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhC
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 682 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~ 682 (715)
++.+|+..++..|..|+.+.|++.|.+|+.+++..-..
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 67899999999999999999999999999888765433
No 174
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=63.54 E-value=1.2e+02 Score=30.10 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhc-CChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC
Q 005088 265 IHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (715)
Q Consensus 265 v~~~a~~~L~~L~~-~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~ 343 (715)
.+...+.-+..|.. .++. .-..+++.++.+-.+.+.++++.++..|...+....+.. ...++.|..+|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 45555555555433 2232 224578888888888889999999999988875433321 235678888888
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHhcC---------------ChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 344 SPDVQLREMSAFALGRLAQVITAGIAHNG---------------GLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~l~~~~---------------~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
+.++.+.+.++.+.+++-...-+.+...+ +-..++.+..+.+..++..+++.+..+.
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88899888888887776533311111111 2234666677889999999998888753
No 175
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=62.60 E-value=14 Score=29.54 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIM 674 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~ 674 (715)
++.+|+..++..|..++.+.|.+.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 578899999999999999999999999974
No 176
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=62.23 E-value=17 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIM 674 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~ 674 (715)
++.+|+..++..|..++.+.|.+.|.+|+.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 678899999999999999999999999974
No 177
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=61.96 E-value=22 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIME 675 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~ 675 (715)
++.+|+..++..|..++.+.|.+.|.+|+.+
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999875
No 178
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=61.81 E-value=10 Score=30.57 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+|+..++..|..|+.+.|.+.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 67889999999999999999999999998764
No 179
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=59.90 E-value=1.4e+02 Score=29.64 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcc-CccchhHHHhcCCcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcC
Q 005088 182 IRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (715)
Q Consensus 182 ~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~ 260 (715)
+...+.-+..|..+ ++. .-.++++.++.+..+++.++++.++..|...+....+... .+++.|..++.+
T Consensus 42 Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d 111 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRD 111 (386)
T ss_dssp HHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 34444455555432 232 2246778899998888999999999999988864444322 346778888888
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHcC---------------ChHHHHhhhccCChHHHHHHHHHHHHHh
Q 005088 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---------------ALQPVIGLLSSCCSESQREAALLLGQFA 319 (715)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g---------------~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (715)
+++.|.+.++.+..++- +..-+.+...+ +-..++.++.+.+..++..+...+..+.
T Consensus 112 ~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp SSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 89999988888887773 12222222222 2234455566677778877777666643
No 180
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=57.24 E-value=26 Score=28.01 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYI 673 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i 673 (715)
++.+++..++..|..|+.+.|.+.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 57889999999999999999999999986
No 181
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.35 E-value=18 Score=30.13 Aligned_cols=67 Identities=7% Similarity=0.074 Sum_probs=54.2
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
++..|..-|.+.++.++..|+..|-.++.+. ...+.+...+..++.++...++.|+..++..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4577788888899999999998888888776 555666677888888887788899999999888765
No 182
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=55.10 E-value=1.3e+02 Score=27.87 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHh
Q 005088 264 AIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (715)
Q Consensus 264 ~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 342 (715)
+.+...+.-...+..+ ++..- ..+++.++.+..+.+.++++..+..+...+...++.. ...++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 5666666666665443 33322 2356667777667788999999999988875433221 23567888888
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHhcC---------------ChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 343 QSPDVQLREMSAFALGRLAQVITAGIAHNG---------------GLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~l~~~~---------------~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
++.++.+.+.+..+.+++-...-+.+...+ .-..++++..+.+..++..+.+.+..+.
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888999999888888777654422222222 2234666677888999999998888753
No 183
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.44 E-value=27 Score=29.99 Aligned_cols=67 Identities=3% Similarity=0.016 Sum_probs=54.2
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhcc-CChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~ 400 (715)
++..|.+-|.+.++.++..|+..|-.+..+. ...+....++..|++++.. .++.|+..++..+...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4567888888999999999999998888886 5566677788888888854 57889999988887764
No 184
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=53.37 E-value=62 Score=37.11 Aligned_cols=216 Identities=13% Similarity=0.044 Sum_probs=109.1
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhC----CCCHHHHHHHHHHHH--HhHHHH-H
Q 005088 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALG--RLAQVI-T 365 (715)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~----~~~~~v~~~a~~~L~--~l~~~~-~ 365 (715)
+.-|+.+-.+.-.+++..|-.+|......-+.....+ +|.+++.|+ ..+.+-.+.|+.+|. .+.... +
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 3445555556668899999999998876555444433 466666663 334444445555544 111111 1
Q ss_pred HHHHhcCChHHHHHhhccCChhHHHHHHHHHHhccCC---CchhhHHHhhccccccccchhhhhhhhhHHHHHH-HHHHH
Q 005088 366 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL-KRLEE 441 (715)
Q Consensus 366 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~-~~~~~ 441 (715)
..-.-...++.|++..+...+.|+..+-.+...+... +.... ......+..+............-..... .+...
T Consensus 210 d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 210 DYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp CHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1112223556666666667777777666555444321 11111 1111111111100000000000000000 10100
Q ss_pred H--HhhhhHHHHHHHHhh-hh--hhHHHHHHHHHHhhcCCCccchhhhcCCcHHHHHHHhcCCCcchhhhhHHHHHHhhh
Q 005088 442 K--IHGRVLNHLLYLMRV-AE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 516 (715)
Q Consensus 442 ~--~~~~~l~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~aa~~L~~L~~ 516 (715)
. .-..+...|+.+.+. .+ ......++..|.++....+. ......+..+++.+.+++|.+|..|..++..+..
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~ 365 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 0 012344455566522 35 67777778886677544331 1233567788889999999999999988876665
Q ss_pred h
Q 005088 517 K 517 (715)
Q Consensus 517 ~ 517 (715)
.
T Consensus 366 ~ 366 (997)
T 1vsy_5 366 K 366 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 185
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=50.62 E-value=32 Score=29.32 Aligned_cols=64 Identities=5% Similarity=0.008 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHHHHHhChh---------------hHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 005088 613 VTLDIAQDLLRAADQYLLE---------------GLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHF 677 (715)
Q Consensus 613 ~~~~~~~~ll~~A~~~~~~---------------~L~~~~~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 677 (715)
++...+..++..+.+..-+ .+...-.+|+ .++.+++..++..|...+...|.+.|.+|++..+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667788888888876621 2223333444 3889999999999999999999999999998654
Q ss_pred H
Q 005088 678 D 678 (715)
Q Consensus 678 ~ 678 (715)
.
T Consensus 127 ~ 127 (159)
T 2ast_A 127 K 127 (159)
T ss_dssp S
T ss_pred c
Confidence 3
No 186
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=50.62 E-value=4 Score=34.14 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 677 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 677 (715)
++.+|+..++..|..|+.+.|.+.|.+|+..++
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999987654
No 187
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.56 E-value=31 Score=29.06 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=55.5
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhcc------CChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 400 (715)
++..|..-|.+.++.++..|+..|-.++.+. ...+.+..++..|++++.. .+..|+..++..+...+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999998886 6677777888889988863 36789999988888775
No 188
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.40 E-value=28 Score=29.34 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=56.6
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (715)
++..|.+-+++.++.++..|+..|-.+... .+.....+....++..|++++.. .+..|+..++..+...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999988863 34556777777889999998864 378999999888877753
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.39 E-value=24 Score=30.27 Aligned_cols=70 Identities=4% Similarity=0.020 Sum_probs=54.0
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 277 (715)
++..|.+-|.+.++.++..|+..|-.+... .......+....++..|++++.. .++.|+..++..|...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455777788889999999999999888863 24456666666788888888875 57889998888877664
No 190
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=48.26 E-value=24 Score=29.35 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=53.2
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (715)
++..|.+-|.+.++.++..|+..|-.+.... +.....+....++..+.+++...++.|+..++..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567777788889999999999888887532 334555656667888888887778899999888887764
No 191
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=48.08 E-value=37 Score=28.60 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=55.2
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhcc------CChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 400 (715)
++..|..-+.+.++.++..|+..|-.++.+. ...+....++..|++++.. .+..|+..++..+...+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677888888999999999999998888877 5667777888889988853 57889999999888875
No 192
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.81 E-value=47 Score=28.73 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=56.0
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (715)
++..|.+-+++.++.++..|+..|-.+.... ......+....++..|++++.. .+..|+..++..|...+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999888632 4456667777888999999863 367899999988887753
No 193
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=46.79 E-value=30 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC
Q 005088 613 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 645 (715)
Q Consensus 613 ~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i 645 (715)
++.+++..++..|+.|+.+.|+..|..++..++
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~ 164 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHA 164 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999998865
No 194
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=46.68 E-value=69 Score=26.55 Aligned_cols=80 Identities=6% Similarity=0.021 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCcc---cCHHHHHHHHHHHHHhChh---------------hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005088 597 EVFELMMRFIYTGSVD---VTLDIAQDLLRAADQYLLE---------------GLKRLCEYTIAQDISLENVSSMYELSE 658 (715)
Q Consensus 597 ~~~~~~l~~~Y~~~~~---~~~~~~~~ll~~A~~~~~~---------------~L~~~~~~~l~~~i~~~~~~~~~~~a~ 658 (715)
..++.++.-.-.+.++ ++...+..+++.+.+..-+ .+...-.+|+ .++.+++.+++..|.
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd~~~l~eLi~AAn 102 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAAN 102 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCCHHHHHHHHHHHH
Confidence 3555555432123343 5677888899999887622 2222223344 378999999999999
Q ss_pred HcCcHHHHHHHHHHHHHHHH
Q 005088 659 AFHAISLRHTCILYIMEHFD 678 (715)
Q Consensus 659 ~~~~~~L~~~~~~~i~~~~~ 678 (715)
..+...|.+.|.++++....
T Consensus 103 yL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 103 YLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp HHTCHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHHHc
Confidence 99999999999999987554
No 195
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.43 E-value=38 Score=29.31 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=55.2
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhcc------CChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 400 (715)
++..|.+-+.+.++.++..|+..|-.++.+. ...+.+..++..|+.++.. .+..|+..++..+...+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3577888889999999999999999888885 6677777888889998853 35789999999888775
No 196
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=44.76 E-value=13 Score=39.03 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=57.5
Q ss_pred cEEEEecCeeecchHHHHhhccHH-HHHhhcC-CCCCCCCCceecCCCCHHHHHHHHHHHhc-CCcccCHH-HHHHHHHH
Q 005088 549 DVTFLVEGRRFYAHRICLLASSDA-FRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRA 624 (715)
Q Consensus 549 d~~~~~~~~~~~~h~~iL~~~s~~-f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~ll~~ 624 (715)
-|.+-|+|..|...+..|...-+- +..++.. .+.....+++-+ |=++..|+.+|.|+.+ |++..+.+ ....+.+=
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E 131 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEE 131 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHH
Confidence 367789999999999988643211 1111110 011123345555 6699999999999999 99876543 35678889
Q ss_pred HHHhChhhHH
Q 005088 625 ADQYLLEGLK 634 (715)
Q Consensus 625 A~~~~~~~L~ 634 (715)
|++|+++++.
T Consensus 132 ~~f~~i~~~~ 141 (514)
T 2r9r_B 132 IRFYELGEEA 141 (514)
T ss_dssp HHHTTCCHHH
T ss_pred HHhcCCCHHH
Confidence 9999998765
No 197
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.40 E-value=47 Score=30.96 Aligned_cols=104 Identities=9% Similarity=0.088 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHhh----cC----CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 218 FTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILML----RS----EDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~g~l~~L~~ll----~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
+.++..+..++++++|+-.+ +. .+..+........++..+ .+ .+..++..+...+.|++......+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~-~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHcccC-CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 45678889999999999964 44 455554322233333332 22 2567888899999999653111000
Q ss_pred HcCChHHHHhhhcc---------CChHHHHHHHHHHHHHhcCCcch
Q 005088 289 AAGALQPVIGLLSS---------CCSESQREAALLLGQFAATDSDC 325 (715)
Q Consensus 289 ~~g~l~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~ 325 (715)
+......+...+.. .+++....++.+++++...++..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~ 222 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 222 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHH
Confidence 01122334444431 36788889999999998655443
No 198
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=44.06 E-value=44 Score=28.12 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=55.4
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (715)
++..|.+-+.+.++.++..|+..|-.+.... ......+....++..|++++.. .+..|+..++..|...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999998888632 3445667777788889999863 478899999988887753
No 199
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=43.44 E-value=12 Score=31.38 Aligned_cols=29 Identities=7% Similarity=0.356 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYI 673 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i 673 (715)
++.+|+..++..|..|+.+.|++.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 57889999999999999999999999875
No 200
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.53 E-value=51 Score=30.08 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=53.9
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~ 400 (715)
++..|..-|.+.++.++..|+..|-.++.+. ...+....++..|..++. ..+..|+..++..+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4577888888999999999999999988887 556666677777887774 456789999988888765
No 201
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=40.45 E-value=20 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIME 675 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~ 675 (715)
++.+|+..++..|..++.+.|.+.|.+++..
T Consensus 87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 6789999999999999999999999998754
No 202
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=39.95 E-value=14 Score=30.78 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 677 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 677 (715)
++.+++..++..|..|+.+.|.+.|.+|+.+++
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 123 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNL 123 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC-----
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999998654
No 203
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=39.20 E-value=84 Score=29.11 Aligned_cols=32 Identities=6% Similarity=0.281 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+++..++..|..|+.+.|.+.|..|+.++
T Consensus 99 i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 99 LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999864
No 204
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=38.76 E-value=23 Score=18.42 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHH
Q 005088 651 SSMYELSEAFHAISLRHTCILY 672 (715)
Q Consensus 651 ~~~~~~a~~~~~~~L~~~~~~~ 672 (715)
+.++.+|..++.++|...|++-
T Consensus 2 ckvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHH
T ss_pred ceEEeehhhcCCHHHHHHHHhc
Confidence 3567788888999999988764
No 205
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=35.13 E-value=14 Score=30.16 Aligned_cols=32 Identities=0% Similarity=0.055 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+|+..++..|..++.+.|.+.|.+|+.+.
T Consensus 96 i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999764
No 206
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.81 E-value=41 Score=31.35 Aligned_cols=107 Identities=8% Similarity=-0.001 Sum_probs=62.0
Q ss_pred hHHHhhHHHHHHhhcCChh-hHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 130 HEVEKGSAFALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+..+..+++++.|+..++. .+..+........+++.+.+.-.+........++-.++..+.|++...-..+. +...
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~ 180 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 180 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTH
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHH
Confidence 3789999999999997777 45555433233444544433211111111237888889999999842111110 1122
Q ss_pred cHHHHHhhc---------cCCHHHHHHHHHHHHHHhcCCh
Q 005088 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFKND 239 (715)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~ 239 (715)
...++.++. ..+++....++-+|++|...++
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 334455443 1367888888999999986433
No 207
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.34 E-value=71 Score=28.95 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=52.3
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHHHHHhhc-cCChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~ 400 (715)
++..|..-|.+.++.++..|+..|-.++.+. ...+.+...+..|+.++. ..+..|+..++..+...+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999888876 556666677888888774 456788888887776654
No 208
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=30.99 E-value=1.6e+02 Score=24.51 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=55.8
Q ss_pred ChhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--ChHHHH
Q 005088 238 NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 309 (715)
Q Consensus 238 ~~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~ 309 (715)
....+..+++.|++..+-..|.. ++..+|...+.+|.++- -....+.++|+-..++.+-.+. .++.++
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 35567888899999999999874 46789999999999993 3356677777767666665554 366776
Q ss_pred HHHHHHHHH
Q 005088 310 EAALLLGQF 318 (715)
Q Consensus 310 ~a~~~L~~l 318 (715)
.|-..+..-
T Consensus 126 la~~Li~~W 134 (145)
T 2xpp_A 126 SAKALVQKW 134 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 209
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=30.80 E-value=3e+02 Score=24.87 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=78.5
Q ss_pred HHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHH-HHHHHHhccCccchhHHHhcC
Q 005088 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA-DAITNLAHENSSIKTRVRMEG 207 (715)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~-~~L~~L~~~~~~~~~~~~~~g 207 (715)
+.+..|+..+.... ..++ .++.+-.++...+. |++....+ .+++.+...++. .
T Consensus 76 E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~n-------Wd~~D~~a~~~~g~~~~~~p~--------~ 131 (232)
T 3jxy_A 76 EFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSW-------WDSVDSIVPTFLGDIFLKHPE--------L 131 (232)
T ss_dssp HHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCC-------HHHHHHHTTTHHHHHHHHCGG--------G
T ss_pred HHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCC-------hHHHHHhhHHHHHHHHHHCHH--------H
Confidence 78877777776443 1222 23444445544332 45555443 455555543332 1
Q ss_pred CcHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 005088 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (715)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (715)
..+.+...+.++++-+++.|+..+..... ..... ...+.+..++.+++.-|+....|+|..++..+++.....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~--~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQ--KMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGG--GCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHh--CCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 34567788889999888888765532221 11111 123455667788899999999999999998888765555
Q ss_pred HHc
Q 005088 288 LAA 290 (715)
Q Consensus 288 ~~~ 290 (715)
++.
T Consensus 205 l~~ 207 (232)
T 3jxy_A 205 VQN 207 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 210
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.94 E-value=90 Score=31.41 Aligned_cols=108 Identities=6% Similarity=-0.017 Sum_probs=64.3
Q ss_pred hHHHhhHHHHHHhhcCChhhHHHHHhc-CChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 130 HEVEKGSAFALGLLAVKPEHQQLIVDN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~-~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+..+..+++++.|+..++.....+... .....+++.+...-..........++..++..+.|++......+. +...
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 388999999999999777754444432 224555655543221111111237888888999999842111110 0122
Q ss_pred cHHHHHhhc---------cCCHHHHHHHHHHHHHHhcCChh
Q 005088 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFKNDE 240 (715)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~~ 240 (715)
+..+..++. ..+++....++-+|++|....+.
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 345555554 24788889999999999964443
No 211
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.89 E-value=1.6e+02 Score=29.61 Aligned_cols=129 Identities=11% Similarity=0.039 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHcCChHHHH-hhhccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC
Q 005088 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (715)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~ 344 (715)
+-.++..|..+..+.+.. +.+..++ ..+....+..+.-+++++.|+.......+..+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666666665543321 1222222 23334457788888999999965433233333322234556665532
Q ss_pred --------CCHHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHhhc---------cCChhHHHHHHHHHHhccC
Q 005088 345 --------PDVQLREMSAFALGRLAQVITAGIAHNGGLVPLLKLLD---------SKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 345 --------~~~~v~~~a~~~L~~l~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~~L~~l~~ 401 (715)
.+..++.+++..+.|++....+.-.+...+..+..++. ..+++....++-||++|..
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 23568888888888998766111111234445666665 2578899999999999974
No 212
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=29.29 E-value=3.1e+02 Score=24.53 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=77.8
Q ss_pred HHHhhHHHHHHhhc-C-ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 131 EVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 131 ~v~~~a~~~L~~l~-~-~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+.+..|+..+.... . .++. ++.+-.++...+. |++....+.+++.++...+. ..
T Consensus 70 E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~n-------Wd~~D~~a~~~~~~~~~~~~--------~~ 125 (220)
T 2b6c_A 70 EYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAW-------WDSVDAWRKFFGSWVALHLT--------EL 125 (220)
T ss_dssp HHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCS-------HHHHHHHHHHHHHHHHHSGG--------GH
T ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCc-------HHHHHHHHHHHHHHHHHChH--------HH
Confidence 77888888887664 2 2211 2222223333222 57777666667777643332 12
Q ss_pred cHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 005088 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (715)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (715)
.+.+...+.+++.-+++.|+..+..... ...... .++.+-.++.+++.-|+....|.|..++..+++....++
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3467788889998888888775532221 111111 144455577788999999999999999988887655544
No 213
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.93 E-value=53 Score=29.96 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=53.6
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc--CChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
+..|..-|++.++ .++..|+.+|-.+. -++.....+.....+..|..+++...+ ..+++
T Consensus 47 ~ral~krl~~~n~------------~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~-------~~Vk~ 107 (226)
T 3zyq_A 47 VNSIKKKVNDKNP------------HVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVE-------VNVRN 107 (226)
T ss_dssp HHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCC-------HHHHH
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCC-------HHHHH
Confidence 5667777777776 89999999998888 466677777777888888888865333 28888
Q ss_pred HHHHHHHHHhc
Q 005088 184 RAADAITNLAH 194 (715)
Q Consensus 184 ~a~~~L~~L~~ 194 (715)
.++..+...+.
T Consensus 108 kil~li~~W~~ 118 (226)
T 3zyq_A 108 KILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877763
No 214
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=27.34 E-value=1.8e+02 Score=33.29 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=59.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhcc----CChHHHHHHHHHHHH-----Hhc
Q 005088 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQ-----FAA 320 (715)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~----~~~~~~~~a~~~L~~-----l~~ 320 (715)
++..|+++..+...+||..|-.+|......-+..... +++.+++.|+. .+.+-.+.|+.+|.. .+.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 4566778888889999999999999987655544433 35666666643 345555555554441 111
Q ss_pred CCcchhHHHhhcCChHHHHHHhCCCCHHHHHHHHHHHHHhH
Q 005088 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (715)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~v~~~a~~~L~~l~ 361 (715)
.+-... ..+++.|++....+.+.++.-+-.+...+.
T Consensus 209 ~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 209 TDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp GCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred cChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 111111 124456666656666776665554444443
No 215
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=26.05 E-value=1.8e+02 Score=24.23 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=57.9
Q ss_pred CccchhHHHhcCCcHHHHHhhcc------CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhcCC--CHHHHH
Q 005088 196 NSSIKTRVRMEGGIPPLVELLEF------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHY 267 (715)
Q Consensus 196 ~~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~v~~ 267 (715)
....+..+.+.|++..+-..|.. ++..++...+.+|..+- ..+..+.++|+-..++.+-+++ .++.+.
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 44456778888999999888862 46789999999888874 3467788888888887777664 567777
Q ss_pred HHHHHHHHh
Q 005088 268 EAVGVIGNL 276 (715)
Q Consensus 268 ~a~~~L~~L 276 (715)
.|-..+..-
T Consensus 126 la~~Li~~W 134 (145)
T 2xpp_A 126 SAKALVQKW 134 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666554
No 216
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=25.92 E-value=50 Score=31.85 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHHHHHhChhhHHHHHHHHHHhcC
Q 005088 613 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 645 (715)
Q Consensus 613 ~~~~~~~~ll~~A~~~~~~~L~~~~~~~l~~~i 645 (715)
++.+++..++.+|+.|+++.|+..|..++..++
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999998865
No 217
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=25.66 E-value=95 Score=29.23 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=29.5
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 005088 645 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 676 (715)
Q Consensus 645 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 676 (715)
++.+++..++..|..++.+.|.+.|..|+.++
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999864
No 218
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=25.23 E-value=3.2e+02 Score=23.35 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=57.1
Q ss_pred ChhhHHHHHhCCChHHHHHhhcC------CCHHHHHHHHHHHHHhhcCChhHHHHHHHcCChHHHHhhhccC--ChHHHH
Q 005088 238 NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 309 (715)
Q Consensus 238 ~~~~~~~~~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~ 309 (715)
....+..+++.|++..+-..|.. ++-.++...+.+|.++- -....+..+|+-.+++-+-.+. .++.++
T Consensus 65 k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 65 KANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp CGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHH
Confidence 45667788899999999999875 46689999999999983 2346667777766666555554 366777
Q ss_pred HHHHHHHHHh
Q 005088 310 EAALLLGQFA 319 (715)
Q Consensus 310 ~a~~~L~~l~ 319 (715)
-|-..+..-+
T Consensus 141 la~~Li~~Ws 150 (170)
T 3nfq_A 141 LAEKLIAEWT 150 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 219
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.76 E-value=89 Score=30.73 Aligned_cols=107 Identities=7% Similarity=-0.012 Sum_probs=62.5
Q ss_pred hHHHhhHHHHHHhhcCChhhHHHHHhcC-ChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHhccCccchhHHHhcCC
Q 005088 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (715)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~~-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~ 208 (715)
+..+..+++++.|+..++.....+.... ....+++.+...-..........++..++..+.|++......+. +...
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3889999999999997777544444321 13344444432211111111237888888999999842111010 0123
Q ss_pred cHHHHHhhc---------cCCHHHHHHHHHHHHHHhcCCh
Q 005088 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFKND 239 (715)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~ 239 (715)
...+..++. ..+++....++-+|++|....+
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 345555554 3578888999999999986333
No 220
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.03 E-value=2.1e+02 Score=28.03 Aligned_cols=100 Identities=9% Similarity=-0.007 Sum_probs=60.8
Q ss_pred cCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCC--------CCHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 005088 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQVITAGIAHNGG 373 (715)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--------~~~~v~~~a~~~L~~l~~~~~~~l~~~~~ 373 (715)
...+..+.-+++++.|+-.+....+..+........+++.+.. .+..++.+++..+.|++....+.-.+...
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~el 289 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 289 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTH
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 3456777888999999965433223333222123344544421 24568888888888998766111111234
Q ss_pred hHHHHHhhc---------cCChhHHHHHHHHHHhccC
Q 005088 374 LVPLLKLLD---------SKNGSLQHNAAFALYGLAD 401 (715)
Q Consensus 374 l~~L~~ll~---------~~~~~v~~~a~~~L~~l~~ 401 (715)
+..+..++. ..+++....++-+|++|..
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 445666665 3588899999999999974
No 221
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.00 E-value=5.5e+02 Score=25.58 Aligned_cols=224 Identities=8% Similarity=0.034 Sum_probs=101.7
Q ss_pred HHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-CChhhHHHHHhcCChHHHHHHHccccCCCcc
Q 005088 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS 175 (715)
Q Consensus 97 ~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 175 (715)
.+..++...+..|+.++.+.++ .=|...-.+|..+. .-...|..+.. .+-..+.+++-.....
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDp------------rER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~--- 185 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDP------------RERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHH--- 185 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCH------------HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCC---
T ss_pred HHhhcCHHHHHHHHHHcCCCCh------------HHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccC---
Confidence 3444445567788899988887 66767777777777 44444433332 1223444544332221
Q ss_pred hhhhHHHHHHHHHHHHHhccC-----ccchhHHHhcCCcHHHHHhhccCCHH-HHHHHHHHHHHHhcCChhhHHHHHhCC
Q 005088 176 RAVNSVIRRAADAITNLAHEN-----SSIKTRVRMEGGIPPLVELLEFTDTK-VQRAAAGALRTLAFKNDENKNQIVECN 249 (715)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~-v~~~a~~~L~~L~~~~~~~~~~~~~~g 249 (715)
.-....+.+++.+..+- ++.+. +. ...|+.+.+..... -...-..++......++.....+
T Consensus 186 ----~GIaeLLeilgsIinGfa~PLkeehk~-fl----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v---- 252 (403)
T 3fga_B 186 ----NGIAELLEILGSIINGFALPLKEEHKI-FL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV---- 252 (403)
T ss_dssp ----TTHHHHHHHHHHHHHHCCSSCCHHHHH-HH----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH----
T ss_pred ----CCHHHHHHHHHHHHcccCCCchHHHHH-HH----HHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH----
Confidence 11223444444444221 11111 11 12344444433321 12344455555555555543332
Q ss_pred ChHHHHHhhcC---CCHHHHHHHHHHHHHhhcC-ChhHHHHHHHcCChHHHHhhhccCChHHHHHHHHHH-----HHHhc
Q 005088 250 ALPTLILMLRS---EDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL-----GQFAA 320 (715)
Q Consensus 250 ~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L-----~~l~~ 320 (715)
+-.+++. .+..=...-+.-|..+... ++..-.. +...++..+...+.+.+..|.+.|+... .++..
T Consensus 253 ----i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~ 327 (403)
T 3fga_B 253 ----VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS 327 (403)
T ss_dssp ----HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH
T ss_pred ----HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHH
Confidence 2223333 2222222222333333221 1221111 1223566677777788777777665432 11221
Q ss_pred CCcchhHHHhhcCChHHHHHHh----C-CCCHHHHHHHHHHHHHhHH
Q 005088 321 TDSDCKVHIVQRGAVRPLIEML----Q-SPDVQLREMSAFALGRLAQ 362 (715)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~~L----~-~~~~~v~~~a~~~L~~l~~ 362 (715)
.+. ..++|.+...| + +-+..++..+..++..+..
T Consensus 328 ~n~--------~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 328 DNA--------AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp TTH--------HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HhH--------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 111 11234433333 2 3577788777777766544
No 222
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.13 E-value=1.5e+02 Score=24.95 Aligned_cols=67 Identities=9% Similarity=0.041 Sum_probs=51.1
Q ss_pred ChHHHHHHhC-CCCHHHHHHHHHHHHHhHHHH----HHHHHhcCChHH-HHHhhcc---CChhHHHHHHHHHHhcc
Q 005088 334 AVRPLIEMLQ-SPDVQLREMSAFALGRLAQVI----TAGIAHNGGLVP-LLKLLDS---KNGSLQHNAAFALYGLA 400 (715)
Q Consensus 334 ~l~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~----~~~l~~~~~l~~-L~~ll~~---~~~~v~~~a~~~L~~l~ 400 (715)
++..|.+-|+ +.++.++..|+..|-.++.+. ...+.+...+.. |++++.. .+..|+..++..+...+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3567788887 478999999999998888886 566667778887 7787742 34578888888887765
No 223
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.80 E-value=3.6e+02 Score=22.64 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=51.5
Q ss_pred CcHHHHHhhc-cCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHH-HHHhhcC---CCHHHHHHHHHHHHHhh
Q 005088 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT-LILMLRS---EDSAIHYEAVGVIGNLV 277 (715)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~l~~-L~~ll~~---~~~~v~~~a~~~L~~L~ 277 (715)
++..|.+-++ ..++.++..|+..|-.+.... +.....+....++.. |++++.. ++..|+..++..+...+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4557777786 478999999999999888632 455666766778887 7888743 34688888888877764
No 224
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=20.67 E-value=1.1e+03 Score=27.83 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHhcCChHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhcCChhhHHHHH---
Q 005088 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV--- 154 (715)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~--- 154 (715)
.+|.+....|-.+..++++.. ++..|.++|... + .+...++.+|++|.-+++....+.
T Consensus 172 ~lQ~diI~sLPeIl~ds~H~~------v~~~L~~lL~~~-~------------~L~~~iLdaLs~L~Ls~~~l~~vr~~v 232 (1323)
T 3s4w_B 172 NLQHDFITSLPEILGDSQHAN------VGKELGELLVQN-T------------SLTVPILDVFSSLRLDPNFLSKIRQLV 232 (1323)
T ss_dssp TTHHHHHHTHHHHSCGGGHHH------HHHHHHHHHHHC-S------------TTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhcchhhHH------HHHHHHHHHhcC-c------------chHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356777777777777655443 256777777663 2 567788888888885554433333
Q ss_pred -h------cCChHHHHHHHccccCCCcchhhhHHHHHHHHHHHHHh-ccC---cc----chhHHHhcC------------
Q 005088 155 -D------NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA-HEN---SS----IKTRVRMEG------------ 207 (715)
Q Consensus 155 -~------~~~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~-~~~---~~----~~~~~~~~g------------ 207 (715)
+ ...+|.++++|-...+.. ++.+ ++..|+.-. ..+ +. ....+...|
T Consensus 233 l~~L~s~~~e~LP~lIkFLL~s~t~~------~~~e-vI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~ 305 (1323)
T 3s4w_B 233 MGKLSSVRLEDFPVIVKFLLHSVTDT------TSLE-VIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSD 305 (1323)
T ss_dssp HHSTTSSCTTHHHHHHHHHHHSCSST------THHH-HHHHHHHHHHCC----------------------------CHH
T ss_pred HHHhccCChhhhHHHHHHHHHhCCHh------hHHH-HHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccc
Confidence 2 245888888775544321 2222 233333211 100 00 000000001
Q ss_pred --CcHHHHHhhcc---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCh
Q 005088 208 --GIPPLVELLEF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSP 281 (715)
Q Consensus 208 --~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~ 281 (715)
....++..+++ ....+..+-++.+.++.... +...++.++-++ .+.+...+..+-.++.+......
T Consensus 306 ~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~--------~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~ 377 (1323)
T 3s4w_B 306 KDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAA--------EHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDC 377 (1323)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGST--------TCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTC
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCccc--------ccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCC
Confidence 01112333322 13344444455555544311 124555555433 23344556666666666543211
Q ss_pred ---hHHHHH------HHcCChHHHHhh----hccCChHHHHHHHHHHHHHhcCCcchhHHHhhcCChHHHHHHhCCCCHH
Q 005088 282 ---NIKKEV------LAAGALQPVIGL----LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 348 (715)
Q Consensus 282 ---~~~~~~------~~~g~l~~L~~l----l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~ 348 (715)
...... +-...++.++.+ +.+.++.++.-+...-..+-...+. ..+..++..|+..+.++...
T Consensus 378 it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~ 453 (1323)
T 3s4w_B 378 IQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEA 453 (1323)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcH
Confidence 111111 113445555533 3456777776666655444333221 22233456777766555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHH-hcCChHHHHHhhccCChhHHHHHHHHHHhcc
Q 005088 349 LREMSAFALGRLAQVITAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 400 (715)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 400 (715)
-...|+.+|..|+......+. ..-.+..+++.+.+-+..=......+|+.++
T Consensus 454 eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 454 EVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 566788899888876522221 2223444555555444333344456666554
No 225
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.29 E-value=77 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=51.3
Q ss_pred hHHHHhhhcCCCCcccccCCCccchHHHhhHHHHHHhhc-C-ChhhHHHHHhcCChHHHHHHHccccCCCcchhhhHHHH
Q 005088 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (715)
Q Consensus 106 v~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (715)
+..|..-|++.++ .++..|+.+|-.+. + ++..+..+.....+..|+.++.+..+ .+++.
T Consensus 44 ~r~l~krl~~~n~------------~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~-------~~Vk~ 104 (220)
T 1dvp_A 44 FAAIKKKMNSPNP------------HSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH-------ENVRQ 104 (220)
T ss_dssp HHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC-------HHHHH
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc-------HHHHH
Confidence 4566677777766 89999999999988 3 46677777777788888888865332 27888
Q ss_pred HHHHHHHHHh
Q 005088 184 RAADAITNLA 193 (715)
Q Consensus 184 ~a~~~L~~L~ 193 (715)
.++..+..-.
T Consensus 105 kil~li~~W~ 114 (220)
T 1dvp_A 105 KMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776665
Done!