BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005091
(715 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/719 (65%), Positives = 542/719 (75%), Gaps = 66/719 (9%)
Query: 1 MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN 60
MALVPSRQ DSFQSSFSKFHGT FFR S PL++ Y + S +KN
Sbjct: 1 MALVPSRQLY-----IDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGY----ACSITDKN 51
Query: 61 PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120
P K+ SF T DK NL + SSW WNKPNK N + PQA +YR NN +
Sbjct: 52 PSTKSTSFPT-------DKSKTLNLSTGSSWFFNWNKPNKQNLPRTPQAVFDYRSNNSNS 104
Query: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERV 180
S GSTM KIVEKLKK GY+ DGD +E + + +ERV
Sbjct: 105 SG------------------SGSTMEKIVEKLKKHGYM-------DGDVNENKERMQERV 139
Query: 181 IEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLV 240
IEKGS+EDIFYVEEG+LPNARGGFSKESPLG+ + SDGEV+FPWEK K+E EG+W
Sbjct: 140 IEKGSVEDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVRFPWEKPKKEEDEGKW-T 198
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
R SRTSLAELTLPESELRRLRNLT+ TKSKTR+ G G+TQ VVD IH+KWKTSEI R+
Sbjct: 199 ARSKSRTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARV 258
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
K+EGAPALNMKRMHEILE KTGGLVIWRSG VSLYRGVSYE P+++ KRI+K+ E
Sbjct: 259 KVEGAPALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKE--- 315
Query: 361 SSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHA----TQVNLETASEEQ 416
S NSL AA T S N +HA T++N+E A++ +
Sbjct: 316 ----------------TSSNSLPAATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQ-K 358
Query: 417 ETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVR 476
ET +VKYEDEV+KLLDGLGPRYTDWPG DPLPVDADMLPG++PGYQPPFR+LPYGVR
Sbjct: 359 ETKTQTDVKYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLPGVIPGYQPPFRILPYGVR 418
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
TL R+++T+L+RLARVLPPHFA+GRSRQLQGLAVAMIKLWEKSSI K+ALKRGVQLTTS
Sbjct: 419 PTLGRQDSTSLRRLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTS 478
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
ERM EDIKKLTGG LLSRNKDFLVFYRGK+FLSP+V+EAL ERERLAKSLQDEEEQARLR
Sbjct: 479 ERMAEDIKKLTGGLLLSRNKDFLVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLR 538
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLE 656
ASA V+PS E +E+SG AG+L+ETLDA+++WGKRLDD HKE ++REAE+ RHA +V++LE
Sbjct: 539 ASALVIPSDEIMEESGIAGSLEETLDADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLE 598
Query: 657 KKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KKLA A+RKL RAER L+KVE LKP+ERQADPESITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 599 KKLAFAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGR 657
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
R L + K+ + G+ V+ +H WK E+V++ ++ +K++ LE ++
Sbjct: 642 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAES 701
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
GG+++ G A+ +YRG Y+ PS+ K + + + A S+ + + +S
Sbjct: 702 GGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVS 760
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/715 (61%), Positives = 527/715 (73%), Gaps = 47/715 (6%)
Query: 1 MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN 60
MAL+PSRQF P T F FH T FFR G S + Y ++ +++ N
Sbjct: 1 MALLPSRQFYPTTTSF------LDSFHSTRLQFFRYGSSNRFRTHSSYVARNTIASNSTN 54
Query: 61 PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120
P RK+ TN SQ+D S +W+ KWN P++ + K + +NYR +
Sbjct: 55 PQRKSNIVFTNTPVSQYDS--GGVSSSGGNWIDKWNGPHQKSHPKESRPVMNYRNSETVS 112
Query: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERV 180
+ G + S TM KIVEKLKKFGY+ D E + +ER+
Sbjct: 113 RSDGGSGGGS-------------TMEKIVEKLKKFGYMDDVK--------ETKENVQERI 151
Query: 181 IEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLV 240
IEKGSIEDIFY+EEG+LPN +GGFS +SPLG+ + +GEV+FPWE+ K V EG +
Sbjct: 152 IEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERPK--VEEGSVRI 209
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
K SRTSLAELTLPESELRRLRNLT +TK+KT+I G G+TQAVVD+I EKWKTSEIV+L
Sbjct: 210 K---SRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKL 266
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
K EGA ALNM+R+HEILERKTGGLVIWRSGT+VSLYRGVSYEVP VQLNKR+YK+NE
Sbjct: 267 KCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVP-VQLNKRVYKKNETSH 325
Query: 361 SSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDF 420
SS S S++ NS + +++KT+ + S NVHA+Q L E + D
Sbjct: 326 SSFS-----------SITPNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENK-DT 373
Query: 421 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 480
EVKYEDE++KLLDGLGPRYTDWPGCDPLP+DAD+LPG + GYQPPFR+LPYGVRS+L
Sbjct: 374 ESEVKYEDEIDKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLG 433
Query: 481 RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMV 540
KEAT L+RLARVLPPHFALGRSRQL+GLA+AMIKLWE+SSIAK+ALKRGVQLTTSERM
Sbjct: 434 LKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMA 493
Query: 541 EDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF 600
EDIKKLTGG LLSRNKDFLVFYRGKNFLS DVTEAL ERERLAK+LQDEEEQARLRAS
Sbjct: 494 EDIKKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTL 553
Query: 601 VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA 660
+ P++ E+ G+AGTL ETL+A++RWGKRLDD K+ ++++AEV RHA LV+KLE++LA
Sbjct: 554 ITPTVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLA 613
Query: 661 RAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
AERKL++AE ALSKVEE LKPA R ADPESITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 614 LAERKLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGR 668
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 59/275 (21%)
Query: 210 LGLGEEVGSDG------EVKFPWEKR-----------KEEVAEGRWLVKRRSSRTSLAEL 252
+G+ E+VGS G E W KR K EVA LV++ R +LAE
Sbjct: 558 VGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAER 617
Query: 253 TL----------------------PES----ELRRLRNLTFQTKSKTRIKGAGLTQAVVD 286
L PES E R L + K+ + G+ V+
Sbjct: 618 KLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVE 677
Query: 287 IIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYE 342
+H WK E+V++ ++ +K+ LE ++GG+++ G A+ ++RG Y+
Sbjct: 678 NMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQ 737
Query: 343 VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQ--------DPS 394
PS K + + + A S+ + ++ IS ++ + Q D
Sbjct: 738 RPSTLRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEE 797
Query: 395 NFDSYNNVHATQVNLETASEEQETDFVREVKYEDE 429
+D ++ +AT E E+E D Y DE
Sbjct: 798 LYDKLDSAYAT----EDEHTEEEGDEAYLETYADE 828
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/715 (61%), Positives = 526/715 (73%), Gaps = 47/715 (6%)
Query: 1 MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN 60
MAL+PSRQF P T F FH T FFR G S + Y ++ +++ N
Sbjct: 1 MALLPSRQFYPTTTSF------LDSFHSTRLQFFRYGSSNRFRTHSSYVTRNTIASNSTN 54
Query: 61 PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120
P RK+ TN SQ+D S +W+ KWN P++ + K + +NYR +
Sbjct: 55 PQRKSNIVFTNTPVSQYDS--GGVSSSGGNWIDKWNGPHQKSHPKEXRPVMNYRNSETVS 112
Query: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERV 180
+ G + S TM KIVEKLKKFGY+ D E + +ER+
Sbjct: 113 RSDGGSGGGS-------------TMEKIVEKLKKFGYMDDVK--------ETKENVQERI 151
Query: 181 IEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLV 240
IEKGSIEDIFY+EEG+LPN +GGFS +SPLG+ + +GEV+FPWE+ K V EG +
Sbjct: 152 IEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERPK--VEEGSVRI 209
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
K SRTSLAELTLPESELRRLRNLT +TK+KT+I G G+TQAVVD+I EKWKTSEIV+L
Sbjct: 210 K---SRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKL 266
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
K EGA ALNM+R+HEILERKTGGLVIWRSGT+VSLYRGVSYEVP VQLNKR+YK+NE
Sbjct: 267 KCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVP-VQLNKRVYKKNETSH 325
Query: 361 SSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDF 420
SS S S++ NS + +++KT+ + S NVHA+Q L E + D
Sbjct: 326 SSFS-----------SITPNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGENK-DT 373
Query: 421 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 480
EVKYEDE++KLLDGLGPRYTDWP CDPLP+DAD+LPG + GYQPPFR+LPYGVRS+L
Sbjct: 374 ESEVKYEDEIDKLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLG 433
Query: 481 RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMV 540
KEAT L+RLARVLPPHFALGRSRQL+GLA+AMIKLWE+SSIAK+ALKRGVQLTTSERM
Sbjct: 434 LKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMA 493
Query: 541 EDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF 600
EDIKKLTGG LLSRNKDFLVFYRGKNFLS DVTEAL ERERLAK+LQDEEEQARLRAS
Sbjct: 494 EDIKKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTL 553
Query: 601 VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA 660
+ P++ E+ G+AGTL ETL+A++RWGKRLDD K+ ++++AEV RHA LV+KLE++LA
Sbjct: 554 ITPTVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLA 613
Query: 661 RAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
AERKL++AE ALSKVEE LKPA R ADPESITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 614 LAERKLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGR 668
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 59/275 (21%)
Query: 210 LGLGEEVGSDG------EVKFPWEKR-----------KEEVAEGRWLVKRRSSRTSLAEL 252
+G+ E+VGS G E W KR K EVA LV++ R +LAE
Sbjct: 558 VGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAER 617
Query: 253 TL----------------------PES----ELRRLRNLTFQTKSKTRIKGAGLTQAVVD 286
L PES E R L + K+ + G+ V+
Sbjct: 618 KLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVE 677
Query: 287 IIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYE 342
+H WK E+V++ ++ +K+ LE ++GG+++ G A+ ++RG Y+
Sbjct: 678 NMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQ 737
Query: 343 VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQ--------DPS 394
PS K + + + A S+ + ++ IS ++ + Q D
Sbjct: 738 RPSTLRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEE 797
Query: 395 NFDSYNNVHATQVNLETASEEQETDFVREVKYEDE 429
+D ++ +AT E E+E D Y DE
Sbjct: 798 LYDKLDSAYAT----EDEHTEEEGDEAYLETYADE 828
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/725 (60%), Positives = 530/725 (73%), Gaps = 55/725 (7%)
Query: 1 MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN 60
MAL+ SR C AT FD+FQ+ +FH +H + G S+ +NR F +F + +
Sbjct: 1 MALLHSR-LCHATNFFDTFQT---EFHSSHI-LLKYGSSVVFRNRSFCSSFYGLTTDTFS 55
Query: 61 PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNY---RKNN 117
S S+ +++ N S SW+ +WN+ K NR KPP+A ++Y +N
Sbjct: 56 NGISYGSLSSRTPVYRYNLRRN---LSRVSWIDRWNETAKRNRPKPPRAVLDYPSSDENE 112
Query: 118 VDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGK 177
V +S+ GF+++ + + GGSTM KIV KLKKFGY+ +DE + +G+
Sbjct: 113 VSISSTGFSKSYRASSRIDDDGRGGSTMEKIVRKLKKFGYI----------DDENKEKGE 162
Query: 178 ERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGR 237
ER IEKGS+EDI Y+EEG+LPN RGGFSKESP+G GSDGEV+FPWEK KE+ E
Sbjct: 163 ERAIEKGSVEDILYIEEGMLPNTRGGFSKESPMGDENMFGSDGEVRFPWEKPKEK--EDT 220
Query: 238 WLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEI 297
R SLA+LTLPE ELRRLRNLTFQ + K +I G G+TQAVVD+IHEKWK+SEI
Sbjct: 221 HGDSTRRGSASLAQLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEI 280
Query: 298 VRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSV-QLNKRIYKRN 356
VRLKI G PALNMKRMHEILERKTGGLVIWRSGT++SLYRGVSYE+P Q NKRIYKRN
Sbjct: 281 VRLKILGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRN 340
Query: 357 ELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVN-LETASE- 414
E+ A + +G S A PS S+ NV+A Q ET+ E
Sbjct: 341 EITA--------------LPKTGASTIA--------PSESSSHRNVYALQQKRAETSIEG 378
Query: 415 ----EQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRV 470
EQ T +V YEDEV KLLDGLGPRYTDWPG DPLPVDADMLPG+VP Y+PPFR+
Sbjct: 379 EHCSEQLTKV--QVNYEDEVNKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRI 436
Query: 471 LPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRG 530
LPYGVRS++ KEAT L+RLAR LPPHFALGR+RQLQGLA+AM KLWE+S IAKIALKRG
Sbjct: 437 LPYGVRSSIGVKEATALKRLARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRG 496
Query: 531 VQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE 590
VQLTTSERM E+IKKLTGG LLSRNKDFLVFYRGK+FLSP+VTEAL ERERLAKSLQD+E
Sbjct: 497 VQLTTSERMAEEIKKLTGGMLLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDKE 556
Query: 591 EQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAY 650
EQARL+ASAFV+P IE E+SGTAG+L+ETLDA++RWGK LDD HKEN++REAE RH
Sbjct: 557 EQARLKASAFVVP-IEKTEQSGTAGSLEETLDADARWGKALDDKHKENVMREAEQLRHTD 615
Query: 651 LVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAF 710
LV+KLE+KLA AERKL++AER L+KVE + PA+RQA+P+SIT+EERFMFRKLGLRMKAF
Sbjct: 616 LVRKLERKLAFAERKLVKAERTLAKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAF 675
Query: 711 LLLGK 715
LLLG+
Sbjct: 676 LLLGR 680
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
++ E E R L + K+ + + V+ +H WK E+V++ I+ ++K
Sbjct: 656 SITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKN 715
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG+++ G A+ +YRG Y+ PS+ K + + + A S+
Sbjct: 716 IALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLLRPKNLLTKRKALARSIELQRH 775
Query: 369 KQIHKQIS 376
+ + K IS
Sbjct: 776 EALLKHIS 783
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/722 (60%), Positives = 510/722 (70%), Gaps = 76/722 (10%)
Query: 1 MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSI-PLKNRFFYQN-----FSSN 54
MALVP+R F FDSF SS FH F HS+ P N F + F N
Sbjct: 1 MALVPTRPF------FDSFHSS-PNFHSLRFCNSLFRHSLTPSPNSTFLRRKPLFIFRCN 53
Query: 55 SAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKP-NKYNRLKPPQASVNY 113
A SFST+ WL +WN P N + R KPP A ++Y
Sbjct: 54 PAK---------SFSTDKH-----------------WLKRWNDPTNNHARPKPPCAVLDY 87
Query: 114 RKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERR 173
+N S G A +D +G G + GGSTM +IVEKLKKFGYV DG
Sbjct: 88 SENG-HASKSGLASSDEEG---GDGNTGGSTMDRIVEKLKKFGYVEDGI----------- 132
Query: 174 GQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEV 233
Q KERVIEKGS+EDIFYVEEG+LPN+RGGFS ESPLG G D EV+FPWEK E
Sbjct: 133 -QNKERVIEKGSVEDIFYVEEGMLPNSRGGFSSESPLGFGSFGSDDREVRFPWEKPVVEE 191
Query: 234 AEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWK 293
E R ++ RS +TSLAELTLPESEL+RL LTF+ K KTRI +G+TQAVVD IHE+WK
Sbjct: 192 LEERKSMRSRS-KTSLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDKIHERWK 250
Query: 294 TSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIY 353
TSEIVRLK EG ALNMKRMHEILERKTGGLVIWRSG +VSLYRGVSYEVPSVQ NK+IY
Sbjct: 251 TSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVPSVQQNKKIY 310
Query: 354 KRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETAS 413
+++E S L + + +PS+ S + A LE+ +
Sbjct: 311 RKSE-------------------NSSKLLPTPSYNSVGNPSDIASNSGTSAPLAKLESTN 351
Query: 414 EEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPY 473
+E+E D++ +V YE EV+KLLDGLGPRYTDWPGCDPLPVDADMLP VPGYQPPFRVLP+
Sbjct: 352 DEKERDYLPKVNYEHEVDKLLDGLGPRYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPF 411
Query: 474 GVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQL 533
GVR+TL +EAT L+R+AR LPPHFALGR+RQLQGLAVAMIKLWE SSIAK+ALKRGVQL
Sbjct: 412 GVRATLGLREATALRRIARTLPPHFALGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQL 471
Query: 534 TTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQA 593
TTSERM E+IKKLTGG LLSRNKDFLVF+RGKNFLS DVT+AL ERER+AK +QDEEEQA
Sbjct: 472 TTSERMAEEIKKLTGGILLSRNKDFLVFFRGKNFLSADVTQALLERERMAKVMQDEEEQA 531
Query: 594 RLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQ 653
RLRAS+ ++P+ T E S AGTL ETLDA+++WGK LD+ HK+ ++RE E RHA LV+
Sbjct: 532 RLRASSLLIPTNNTSELSAEAGTLGETLDADAKWGKTLDERHKQKIMREVEQLRHANLVK 591
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
KLE+KL+ AERKL RAE+AL KVE LKP+E +ADPESITDEERFMFRKLGLRMKAFLLL
Sbjct: 592 KLEQKLSFAERKLRRAEKALMKVESFLKPSEYKADPESITDEERFMFRKLGLRMKAFLLL 651
Query: 714 GK 715
G+
Sbjct: 652 GR 653
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
R L + K+ + G+ ++ +H WK E+V++ ++ +K++ LE ++
Sbjct: 638 FRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAES 697
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
GG+++ G +V +YRG Y+ PS K + + + A S+ + + IS
Sbjct: 698 GGVLVSVDKVSKGYSVIVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRHEALMNHIS 756
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/573 (71%), Positives = 474/573 (82%), Gaps = 26/573 (4%)
Query: 145 MGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGK-ERVIEKGSIEDIFYVEEGLLPNARGG 203
M KIVEKLKK GY+ DG+ DE++ + ERVI+KGS+EDIFYVEEG LPN+RGG
Sbjct: 1 MEKIVEKLKKHGYI-------DGNVDEKKKEKTLERVIQKGSVEDIFYVEEGNLPNSRGG 53
Query: 204 FSKESPLGLGEEVGSDGEVKFPWEK-RKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL 262
FSKESPLG+ + S+GEV+FPWEK ++EE+ + R SRT LAELTLPESELRRL
Sbjct: 54 FSKESPLGVEDVFKSNGEVRFPWEKPKREELEHEKKWTARSKSRTQLAELTLPESELRRL 113
Query: 263 RNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTG 322
RNLT+Q KSK R+KGAG+TQ VVD IH++WKTSEIVR+K+EGAPALNM+RMHEILERKTG
Sbjct: 114 RNLTYQIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTG 173
Query: 323 GLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSL 382
GLVIWRSGT+VSLYRGVSYE PSVQLNK+I KRNEL +S+S AT I S +
Sbjct: 174 GLVIWRSGTSVSLYRGVSYEDPSVQLNKQILKRNELSNNSLSTATG------IIRSPSKS 227
Query: 383 SAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYT 442
+A++D N H + E++E + EVKYEDEV+KLL+GLGPRYT
Sbjct: 228 AASSD-----------LNMPHLNSDSTAEGEEKKEIEMETEVKYEDEVDKLLEGLGPRYT 276
Query: 443 DWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGR 502
DW G DPLPVDADMLPGI+PGYQPPFR+LPYGVRS+L +KEAT+L+RLAR+LPPHFALGR
Sbjct: 277 DWAGLDPLPVDADMLPGIIPGYQPPFRILPYGVRSSLGQKEATSLRRLARILPPHFALGR 336
Query: 503 SRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFY 562
SRQLQGLA AMIKLWEKSSIAKI+LKRGVQLTTSERM EDIKKLTGG LLSRNKDFLVFY
Sbjct: 337 SRQLQGLADAMIKLWEKSSIAKISLKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFY 396
Query: 563 RGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLD 622
RGK+FLSP+VTEAL ERERLA+SLQD+EEQARLRASA + + ET+E+ GTAGTL+ETLD
Sbjct: 397 RGKDFLSPEVTEALVERERLAQSLQDKEEQARLRASALFVQTAETLEQPGTAGTLEETLD 456
Query: 623 ANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKP 682
A++RWGK LD +H+E ++REAE+ RHA LV+KLE KLA AE+KL++AERALSKVE LKP
Sbjct: 457 ADARWGKCLDQNHREKIMREAEIARHANLVRKLESKLAFAEKKLMKAERALSKVEVFLKP 516
Query: 683 AERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
AERQADPESITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 517 AERQADPESITDEERFMFRKLGLRMKAFLLLGR 549
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/729 (57%), Positives = 505/729 (69%), Gaps = 90/729 (12%)
Query: 1 MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAH--E 58
MAL+P+RQ P F +S FH + FF S ++ F ++ + N +
Sbjct: 1 MALLPTRQLHP-------FHTS-PNFHHS-IRFFTTISSSSIQKSFIFKTPTKNFTYLSS 51
Query: 59 KNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNV 118
KNP SF T+ +WL +WN+ NR KPP+ +NY+
Sbjct: 52 KNPIFHLKSFCTD------------------TWLKRWNE---QNRPKPPRGVLNYQ---- 86
Query: 119 DLSALGFARTDSDGNGVGGVDD---------GGSTMGKIVEKLKKFGYVGDGDGDGDGDN 169
GNG D GGS M +IVEKLKKFGY ++
Sbjct: 87 -----------GSGNGHSSKSDFDSSDDEDFGGSRMDRIVEKLKKFGY----------ES 125
Query: 170 DERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEE-VGSDGEVKFPWEK 228
DE +E VIEKGS+EDIFYVEEG+LPN RGGFS ESP G+G G GEV+FPWEK
Sbjct: 126 DENENIKEEGVIEKGSMEDIFYVEEGMLPNTRGGFSPESPFGIGSYGSGDGGEVRFPWEK 185
Query: 229 R--KEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVD 286
EEV E R+ S+TS+AELTLPESELRRL LTF K KTRI G G+TQA VD
Sbjct: 186 PVVDEEVEER--TSSRKKSKTSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVD 243
Query: 287 IIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSV 346
IHE+WKTSEIVRLK EG ALNMKRMHEILE+KTGGLVIWRSG +VSLYRGVSY+ PS+
Sbjct: 244 KIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPSI 303
Query: 347 QLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQ 406
Q NK++Y++NE S LSA +D +PS F + + +
Sbjct: 304 QQNKQLYRKNE-------------------KSLKFLSAPSDDFEVEPSEFTTDSETKTSL 344
Query: 407 VNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQP 466
LE+ ++++E + ++ YEDEV+KLLDGLGPRYTDWPGC+PLPVDADMLP VPGYQP
Sbjct: 345 EKLESTNDQKEKVNLPKISYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQP 404
Query: 467 PFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIA 526
PFRVLP+GVR TL KEAT+L+R+AR LPPHFALGR+RQLQGLA AMIKLWEKSSIAK+A
Sbjct: 405 PFRVLPFGVRPTLGFKEATSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVA 464
Query: 527 LKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSL 586
LKRGVQLTTSERM E+IKKLTGG +LSRNKDFLVFYRGKNFLSPDVT+AL ERE++AKS+
Sbjct: 465 LKRGVQLTTSERMAEEIKKLTGGIILSRNKDFLVFYRGKNFLSPDVTQALLEREKMAKSM 524
Query: 587 QDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVR 646
QDEEEQARLRAS+ +LP+I T E S AGTL ETLDA+++WGK LD+ H++ ++RE E
Sbjct: 525 QDEEEQARLRASSLILPAINTSELSAEAGTLGETLDADAKWGKTLDECHEQKVMREVEQL 584
Query: 647 RHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLR 706
RHA +V+KLE+KL+ AERK+ RAERAL KVE SLKP+E +ADPESITDEERFMFRKLGLR
Sbjct: 585 RHANIVRKLEEKLSLAERKIRRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLR 644
Query: 707 MKAFLLLGK 715
MKAFLLLG+
Sbjct: 645 MKAFLLLGR 653
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 229 RKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDII 288
R+ E A + V + S T ++ + E R L + K+ + G+ ++ +
Sbjct: 605 RRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENM 664
Query: 289 HEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVP 344
H WK E+V++ ++ ++K++ LE ++GG+++ G ++ +YRG Y+ P
Sbjct: 665 HLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRP 724
Query: 345 SVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADK 388
S+ K + + + A S+ + Q H+ +S ++L + +K
Sbjct: 725 SMLRPKNLLTKRKALARSI----ELQRHEALSSHISTLQSKVEK 764
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/727 (56%), Positives = 501/727 (68%), Gaps = 83/727 (11%)
Query: 1 MALVPSRQFCPATA---IFDSFQSSFSKFHGTHFHFFRCGHSIPL---KNRFFYQNFSSN 54
MA+ PS F P T SFQSSF F R SI + K F
Sbjct: 1 MAMKPSLHFYPTTVTKKFVYSFQSSFCS------RFIRYSSSISIGSCKGVVF------- 47
Query: 55 SAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYR 114
S+ P + SFS +D N + WL WN+ K N+ KPP+ VNYR
Sbjct: 48 SSRNYQIPSRRFSFS---------RDGN-----NGEWLENWNRIQKRNQPKPPKVVVNYR 93
Query: 115 KNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRG 174
K +S G+ D GSTM KIVEKLKK+GY+ G+ + N E
Sbjct: 94 KEGGIVS----------GDDNRSRDGEGSTMEKIVEKLKKYGYMEKGE---EVQNKEIE- 139
Query: 175 QGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK---RKE 231
+ER IEKGS+EDIFYVEEG LPN RGGF++ES LG + GS+GEV FPWEK +++
Sbjct: 140 --QERRIEKGSVEDIFYVEEGNLPNTRGGFTEESLLGRDDVFGSNGEVGFPWEKMSAKEK 197
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEK 291
+ E W K+ +R SLAE+TLPESELRRLRNLTF+T SK RI+GAG+TQ VD I EK
Sbjct: 198 KELEAEWTAKK-ENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGAGVTQVAVDAIKEK 256
Query: 292 WKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKR 351
WK++EIVRLKIEGA ALNM++MHEILE+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+
Sbjct: 257 WKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ 316
Query: 352 IYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQV-NLE 410
+R E P SS+ + T +M NS VH Q+ +
Sbjct: 317 --RREETPPSSLPETT--------TMVDNS-----------------DGKVHLPQLEQVT 349
Query: 411 TASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRV 470
T+ E+++ +V+YEDE+++LLDGLGPR+ DWPG +PLPVDAD+LPG +PGY+PPFRV
Sbjct: 350 TSVEKKDQTSQPDVEYEDEIDELLDGLGPRFMDWPGDNPLPVDADLLPGAIPGYEPPFRV 409
Query: 471 LPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRG 530
LPYGVRS+L KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LWEKS +AKIA+KRG
Sbjct: 410 LPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRG 469
Query: 531 VQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE 590
VQ TTSERM ED+KKLTGG LLSRNKDFLVFYRGKNFLS +V +AL E+ER ++LQDEE
Sbjct: 470 VQSTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEE 529
Query: 591 EQARLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRL-DDSHKENLVREAEVRRH 648
EQARLR +SA ++P IE +K +AGTL ETLDA +WGK L DD H + + +E E+ RH
Sbjct: 530 EQARLRGSSALIVPCIEPPKKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRH 589
Query: 649 AYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMK 708
LV+KLE+KLA AERKLL+AER L+KVEE LKPAE++ DP+SITDEERFMFRKLGL+MK
Sbjct: 590 ENLVRKLERKLAFAERKLLKAERGLAKVEECLKPAEQREDPDSITDEERFMFRKLGLKMK 649
Query: 709 AFLLLGK 715
AFLLLG+
Sbjct: 650 AFLLLGR 656
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
R L + K+ + G+ V+ +H WK E+V++ ++ +K++ LE ++
Sbjct: 641 FRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAES 700
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
GG+++ G A+ +YRG Y+ P++ K + + + A S+ + + K IS
Sbjct: 701 GGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHIS 759
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/724 (55%), Positives = 496/724 (68%), Gaps = 72/724 (9%)
Query: 1 MALVPSRQFCPATA---IFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAH 57
MA+ PS FCP T SFQSSF F F R SI L +
Sbjct: 1 MAMKPSLHFCPTTVTKKFVYSFQSSFC------FRFLRYSSSISLGSC------------ 42
Query: 58 EKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNN 117
K +FS+ N + + C++ WL WN+ K N+ KPP+ VNYRK
Sbjct: 43 ------KGVTFSSRNDQIASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEG 96
Query: 118 VDLSALGFARTD-SDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQG 176
F+ ++ G+ D GSTM KIVEKLKK+GY+ + + +
Sbjct: 97 ------RFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYM---------EEVQNKEIE 141
Query: 177 KERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK---RKEEV 233
+ER IEKGS+EDIFYVEEG LPN RGGF++ES LG +GS+G+V FPWEK ++++
Sbjct: 142 QERRIEKGSVEDIFYVEEGKLPNTRGGFTEESLLGGENVIGSNGDVGFPWEKMSAKEKKE 201
Query: 234 AEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWK 293
E W K+ +R SLAE+TLPESELRRLRNLTF+T SK RI+G G+TQ VD I EKWK
Sbjct: 202 LEAEWTAKK-ENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWK 260
Query: 294 TSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIY 353
++EIVRLKIEGA ALNM++MHEILE+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+
Sbjct: 261 SAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ-- 318
Query: 354 KRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETAS 413
+R E P +V + D+ + DK+ + VH Q+ ET S
Sbjct: 319 RREETPPEAVIENHDET------------TTMVDKSDE---------KVHLPQLEQETTS 357
Query: 414 EEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPY 473
E++ V+YEDE+++LLD LGPR+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPY
Sbjct: 358 VEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPY 417
Query: 474 GVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQL 533
GVRS+L KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ
Sbjct: 418 GVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQS 477
Query: 534 TTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQA 593
TTSERM ED+KKLTGG +LSRNKDFLVFYRGKNFLS +V +AL E+ER ++LQDEEEQA
Sbjct: 478 TTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQA 537
Query: 594 RLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRL-DDSHKENLVREAEVRRHAYL 651
RLR +SA ++PS E K +AGTL ETLDA +WGK L DD H + + +E E+ RH L
Sbjct: 538 RLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENL 597
Query: 652 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 711
V+KLE+KLA AERKLL+AER L+KVE LKPAE++ DPESITDEERFMFRKLGL+MKAFL
Sbjct: 598 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657
Query: 712 LLGK 715
LLG+
Sbjct: 658 LLGR 661
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
R L + K+ + G+ V+ +H WK E+V++ ++ +K++ LE ++
Sbjct: 646 FRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAES 705
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
GG+++ G A+ +YRG Y+ P++ K + + + A S+ + + K IS
Sbjct: 706 GGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHIS 764
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/723 (55%), Positives = 495/723 (68%), Gaps = 72/723 (9%)
Query: 1 MALVPSRQFCPATA---IFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAH 57
MA+ PS FCP T SFQSSF F F R SI L +
Sbjct: 1 MAMKPSLHFCPTTVTKKFVYSFQSSFC------FRFLRYSSSISLGSC------------ 42
Query: 58 EKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNN 117
K +FS+ N + + C++ WL WN+ K N+ KPP+ VNYRK
Sbjct: 43 ------KGVTFSSRNDQIASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEG 96
Query: 118 VDLSALGFARTD-SDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQG 176
F+ ++ G+ D GSTM KIVEKLKK+GY+ + + +
Sbjct: 97 ------RFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYM---------EEVQNKEIE 141
Query: 177 KERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK---RKEEV 233
+ER IEKGS+EDIFYVEEG LPN RGGF++ES LG +GS+G+V FPWEK ++++
Sbjct: 142 QERRIEKGSVEDIFYVEEGKLPNTRGGFTEESLLGGENVIGSNGDVGFPWEKMSAKEKKE 201
Query: 234 AEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWK 293
E W K+ +R SLAE+TLPESELRRLRNLTF+T SK RI+G G+TQ VD I EKWK
Sbjct: 202 LEAEWTAKK-ENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWK 260
Query: 294 TSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIY 353
++EIVRLKIEGA ALNM++MHEILE+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+
Sbjct: 261 SAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ-- 318
Query: 354 KRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETAS 413
+R E P +V + D+ + DK+ + VH Q+ ET S
Sbjct: 319 RREETPPEAVIENHDET------------TTMVDKSDE---------KVHLPQLEQETTS 357
Query: 414 EEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPY 473
E++ V+YEDE+++LLD LGPR+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPY
Sbjct: 358 VEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPY 417
Query: 474 GVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQL 533
GVRS+L KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ
Sbjct: 418 GVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQS 477
Query: 534 TTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQA 593
TTSERM ED+KKLTGG +LSRNKDFLVFYRGKNFLS +V +AL E+ER ++LQDEEEQA
Sbjct: 478 TTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQA 537
Query: 594 RLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRL-DDSHKENLVREAEVRRHAYL 651
RLR +SA ++PS E K +AGTL ETLDA +WGK L DD H + + +E E+ RH L
Sbjct: 538 RLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENL 597
Query: 652 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 711
V+KLE+KLA AERKLL+AER L+KVE LKPAE++ DPESITDEERFMFRKLGL+MKAFL
Sbjct: 598 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657
Query: 712 LLG 714
LLG
Sbjct: 658 LLG 660
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/724 (54%), Positives = 484/724 (66%), Gaps = 103/724 (14%)
Query: 1 MALVPSRQFCPATA---IFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAH 57
MA+ PS FCP T SFQSSF F F R
Sbjct: 1 MAMKPSLHFCPTTVTKKFVYSFQSSFC------FRFLRD--------------------- 33
Query: 58 EKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNN 117
C++ WL WN+ K N+ KPP+ VNYRK
Sbjct: 34 ----------------------------CNNGVWLENWNRIQKRNQPKPPKVVVNYRKEG 65
Query: 118 VDLSALGFARTD-SDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQG 176
F+ ++ G+ D GSTM KIVEKLKK+GY+ + + +
Sbjct: 66 ------RFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYM---------EEVQNKEIE 110
Query: 177 KERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK---RKEEV 233
+ER IEKGS+EDIFYVEEG LPN RGGF++ES LG +GS+G+V FPWEK ++++
Sbjct: 111 QERRIEKGSVEDIFYVEEGKLPNTRGGFTEESLLGGENVIGSNGDVGFPWEKMSAKEKKE 170
Query: 234 AEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWK 293
E W K+ +R SLAE+TLPESELRRLRNLTF+T SK RI+G G+TQ VD I EKWK
Sbjct: 171 LEAEWTAKK-ENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWK 229
Query: 294 TSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIY 353
++EIVRLKIEGA ALNM++MHEILE+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+
Sbjct: 230 SAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ-- 287
Query: 354 KRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETAS 413
+R E P +V + D+ + DK+ + VH Q+ ET S
Sbjct: 288 RREETPPEAVIENHDET------------TTMVDKSDE---------KVHLPQLEQETTS 326
Query: 414 EEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPY 473
E++ V+YEDE+++LLD LGPR+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPY
Sbjct: 327 VEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPY 386
Query: 474 GVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQL 533
GVRS+L KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ
Sbjct: 387 GVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQS 446
Query: 534 TTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQA 593
TTSERM ED+KKLTGG +LSRNKDFLVFYRGKNFLS +V +AL E+ER ++LQDEEEQA
Sbjct: 447 TTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQA 506
Query: 594 RLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRL-DDSHKENLVREAEVRRHAYL 651
RLR +SA ++PS E K +AGTL ETLDA +WGK L DD H + + +E E+ RH L
Sbjct: 507 RLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENL 566
Query: 652 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 711
V+KLE+KLA AERKLL+AER L+KVE LKPAE++ DPESITDEERFMFRKLGL+MKAFL
Sbjct: 567 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 626
Query: 712 LLGK 715
LLG+
Sbjct: 627 LLGR 630
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
R L + K+ + G+ V+ +H WK E+V++ ++ +K++ LE ++
Sbjct: 615 FRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAES 674
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
GG+++ G A+ +YRG Y+ P++ K + + + A S+ + + K IS
Sbjct: 675 GGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHIS 733
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/769 (52%), Positives = 484/769 (62%), Gaps = 130/769 (16%)
Query: 1 MALVPSRQFCPATA---IFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAH 57
MA+ SR FCP T DS SSF K HG SI L++ F +F
Sbjct: 1 MAINSSRHFCPTTTSAKFSDSLGSSFCKLHGK-------SSSISLRSYIFGFSFI----- 48
Query: 58 EKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNN 117
K R +C S SSS WN+ + N+ +P + +N RK
Sbjct: 49 -KKVKRLSCEGS-----------------GSSSRNENWNRNQRQNQFRPSKVVLNRRKEE 90
Query: 118 VDLSALGF--ARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQ 175
S LG S + VGG GGSTM KIVEKLKK+G+V D D + +
Sbjct: 91 -RFSDLGVMSGENSSRSSDVGG---GGSTMEKIVEKLKKYGFVDD-------DQFQDKEV 139
Query: 176 GKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK----RKE 231
+ER IE+ ++ED FYV+EG RGGFS+ESP G V EVKFPWEK K+
Sbjct: 140 EQERRIEERAVEDRFYVKEG-----RGGFSEESPFG----VFGGNEVKFPWEKVSSMEKK 190
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEK 291
E+ G W K+ SR SLAE TL ESEL RLRN+ F+TKSK R+ GAG+TQAVVD I EK
Sbjct: 191 ELVNGEWTAKK-ESRYSLAERTLSESELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEK 249
Query: 292 WKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLY--RGVSYEVPSVQLN 349
WK+SEIVRLKIEGA ALNM+RMHEILERKTGGLVIWRSGT+++LY +G + S +N
Sbjct: 250 WKSSEIVRLKIEGASALNMRRMHEILERKTGGLVIWRSGTSIALYNYKGGNNRDGSGNMN 309
Query: 350 KRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNL 409
K+IY+R E SS+ T + D++ Q VH Q+
Sbjct: 310 KQIYRRAETLQSSLPTNT----------------STVDQSVQ---------LVHLPQLEK 344
Query: 410 E-TASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPF 468
E T ++ EV+YEDE+ +LL+GLGPRYTDW G PLPVDAD+LPGIVP Y+PPF
Sbjct: 345 EPTVVGNKDRTSPHEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPVYEPPF 404
Query: 469 RVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALK 528
RVLPYGVRSTL KEAT+L+R+A VLPPHFALGRSRQLQGLA AM+KLW+KS IAK+ALK
Sbjct: 405 RVLPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALK 464
Query: 529 RGVQLTTSERMVEDIKK-------------LTGGTLLSRNKDFLVFYRGKNFLSPDVTEA 575
RGVQLTTSERM EDIK LTGG LLSRNKDFLVFYRGK+FLSP+V EA
Sbjct: 465 RGVQLTTSERMAEDIKVIRIHIRVTFDCLILTGGMLLSRNKDFLVFYRGKSFLSPEVAEA 524
Query: 576 LQERERLAKSLQDEEEQARLRA-SAFVLPSIETIEKSG---------------------- 612
L E+ERL ++LQDEEEQARLRA SA V+PSI+ +
Sbjct: 525 LMEKERLVRTLQDEEEQARLRASSALVVPSIKANQNLARTLQDEEKQSRPSTLVVPSTKA 584
Query: 613 -----TAGTLKETLDANSRWGKRLD-DSHKENLVREAEVRRHAYLVQKLEKKLARAERKL 666
+AGTL ETLDA +WGK LD D H E + +E E R A LV+KLE+KLA AE+KL
Sbjct: 585 NQNLVSAGTLGETLDATGKWGKSLDNDDHVEEMKQEVERMRSAKLVRKLERKLAFAEKKL 644
Query: 667 LRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
L+AERAL+KVEESLKPAE++ D E IT+EERFMF+KLGLRMKAFLLLG+
Sbjct: 645 LKAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLRMKAFLLLGR 693
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 246 RTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGA 305
RT L +T E E + L + K+ + G+ V+ +H WK E++++ ++
Sbjct: 664 RTDLEGIT--EEERFMFQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAK 721
Query: 306 PALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPAS 361
K++ LE ++GG+++ G AV +YRG Y+ P+ K + + + A
Sbjct: 722 SLEGAKKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALAR 781
Query: 362 SVSQATDKQIHKQI 375
S+ + + K I
Sbjct: 782 SLELQKREALIKHI 795
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/768 (51%), Positives = 488/768 (63%), Gaps = 133/768 (17%)
Query: 1 MALVPSRQFCP-------ATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSS 53
MA+ S FCP + DS SSF KFHGT SI L++ F +F
Sbjct: 1 MAINSSHHFCPMTTTTTTSAKFVDSLGSSFCKFHGT-------SSSISLRSYRFGFSFM- 52
Query: 54 NSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNY 113
KN R +C S+++ S+++ WN+ K N+ +P + +N
Sbjct: 53 -----KNVKRLSCEGSSSSSSSRNEN---------------WNRTQKQNQFRPSKVVLNR 92
Query: 114 RKNNVDLSALGFARTDSDGNGVGGVDDGGS--TMGKIVEKLKKFGYVGDGDGDGDGDNDE 171
RK+ S LG ++ GS TM KIVEKLKK+G+V D D +
Sbjct: 93 RKDE-RFSDLGVISGENSSRSGDVGGGSGSSSTMEKIVEKLKKYGFV-------DEDQFQ 144
Query: 172 RRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK--- 228
+ +ER IEK S+E+ FYVEE RGGFS+ESP G+ G + EVKFPWEK
Sbjct: 145 DKEVEQERRIEKSSVEERFYVEE-----RRGGFSEESPFGV---YGGNDEVKFPWEKVSS 196
Query: 229 -RKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDI 287
K+E+ G W K+ SR SLAE+TL E EL RLRN+ F+TKSK R+ GAG+TQAVVD
Sbjct: 197 MEKKELVNGEWTAKK-ESRYSLAEMTLSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDA 255
Query: 288 IHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLY--RGVSYEVPS 345
I EKWK SEIVRLKIEG+ ALNM+RMHEILERKTGGLVIWRSGT+++LY +G S S
Sbjct: 256 IQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIALYNYKGGSNRDGS 315
Query: 346 VQLNKRIYKRNE-----LPASSVSQATD----KQIHKQISMSGNSLSAAADKTAQDPSNF 396
+NK++Y+R E LP S+V Q+ Q+ K+ ++ GN D+T+
Sbjct: 316 GNMNKQVYRRAERLPSSLPTSTVDQSVQLVNLPQLEKEPTVVGNK-----DRTSP----- 365
Query: 397 DSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADM 456
+EV+YEDE+ +LL+GLGPRYTDW G PLPVDAD+
Sbjct: 366 -------------------------QEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADL 400
Query: 457 LPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKL 516
LPGIVPGY+PPFR LPYGVRSTL KEAT+L+R+A VLPPHFALGRSRQLQGLA AM+KL
Sbjct: 401 LPGIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKL 460
Query: 517 WEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEAL 576
W+KS IAK+ALKRGVQLTTSERM EDIK+LTGG LLSRNKDFLVFYRGK+FLS +V EAL
Sbjct: 461 WQKSLIAKVALKRGVQLTTSERMAEDIKRLTGGMLLSRNKDFLVFYRGKSFLSLEVGEAL 520
Query: 577 QERERLAKSLQDEEEQARLRA----------------------------SAFVLPSIETI 608
E+E L ++LQDEEEQARLRA SA VLPS +
Sbjct: 521 MEKEMLVRTLQDEEEQARLRASSALVVPSIKANQQLARTLQDKEEQARPSALVLPSTKAN 580
Query: 609 EKSGTAGTLKETLDANSRWGKRLD-DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLL 667
+ +AGTL ETLDA +WGK LD D H E + +E E R A LV+KLE+KLA AE+KLL
Sbjct: 581 QNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRSAKLVRKLERKLAFAEKKLL 640
Query: 668 RAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+AERAL+KVEESLKPAE++ D E IT+EERFMF+KLGL+MKAFLLLG+
Sbjct: 641 KAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGR 688
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 393/793 (49%), Positives = 480/793 (60%), Gaps = 172/793 (21%)
Query: 1 MALVPSRQFCP-------ATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSS 53
MA+ S FCP + DS SSF KFHGT SI L++ F + SS
Sbjct: 1 MAINSSHHFCPMTTTTTTSAKFVDSLGSSFCKFHGT-------SSSISLRSYRFGSSSSS 53
Query: 54 NSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNY 113
+S +E WN+ K N+ +P + +N
Sbjct: 54 SSRNEN-----------------------------------WNRTQKQNQFRPSKVVLNR 78
Query: 114 RKNNVDLSALGFARTDSDGNGVGGVDDGGS--TMGKIVEKLKKFGYVGDGDGDGDGDNDE 171
RK+ S LG ++ GS TM KIVEKLKK+G+V D D +
Sbjct: 79 RKDE-RFSDLGVISGENSSRSGDVGGGSGSSSTMEKIVEKLKKYGFV-------DEDQFQ 130
Query: 172 RRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEK--- 228
+ +ER IEK S+E+ FYVEE RGGFS+ESP G+ G + EVKFPWEK
Sbjct: 131 DKEVEQERRIEKSSVEERFYVEE-----RRGGFSEESPFGV---YGGNDEVKFPWEKVSS 182
Query: 229 -RKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDI 287
K+E+ G W K+ SR SLAE+TL E EL RLRN+ F+TKSK R+ GAG+TQAVVD
Sbjct: 183 MEKKELVNGEWTAKK-ESRYSLAEMTLSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDA 241
Query: 288 IHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLY--RGVSYEVPS 345
I EKWK SEIVRLKIEG+ ALNM+RMHEILERKTGGLVIWRSGT+++LY +G S S
Sbjct: 242 IQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIALYNYKGGSNRDGS 301
Query: 346 VQLNKRIYKRNE-----LPASSVSQATD----KQIHKQISMSGNSLSAAADKTAQDPSNF 396
+NK++Y+R E LP S+V Q+ Q+ K+ ++ GN D+T+
Sbjct: 302 GNMNKQVYRRAERLPSSLPTSTVDQSVQLVNLPQLEKEPTVVGNK-----DRTSP----- 351
Query: 397 DSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADM 456
+EV+YEDE+ +LL+GLGPRYTDW G PLPVDAD+
Sbjct: 352 -------------------------QEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADL 386
Query: 457 LPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKL 516
LPGIVPGY+PPFR LPYGVRSTL KEAT+L+R+A VLPPHFALGRSRQLQGLA AM+KL
Sbjct: 387 LPGIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKL 446
Query: 517 WEKSSIAKIALKRGVQLTTSERMVEDI-------------------------KKLTGGTL 551
W+KS IAK+ALKRGVQLTTSERM EDI K+LTGG L
Sbjct: 447 WQKSLIAKVALKRGVQLTTSERMAEDIKVIRFHSRVTFNCFYINVDIIRINDKRLTGGML 506
Query: 552 LSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA-------------- 597
LSRNKDFLVFYRGK+FLS +V EAL E+E L ++LQDEEEQARLRA
Sbjct: 507 LSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSIKANQQ 566
Query: 598 --------------SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD-DSHKENLVRE 642
SA VLPS + + +AGTL ETLDA +WGK LD D H E + +E
Sbjct: 567 LARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQE 626
Query: 643 AEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRK 702
E R A LV+KLE+KLA AE+KLL+AERAL+KVEESLKPAE++ D E IT+EERFMF+K
Sbjct: 627 VEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFMFQK 686
Query: 703 LGLRMKAFLLLGK 715
LGL+MKAFLLLG+
Sbjct: 687 LGLKMKAFLLLGR 699
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 333/638 (52%), Positives = 424/638 (66%), Gaps = 74/638 (11%)
Query: 91 WLVKWNKPNKYNRLKPPQASVNYRKNNVDLS------ALGFARTDSDGNGVGGVDDGGST 144
WL W+ P + RL+ P A+++ R S A+G +R+ G ST
Sbjct: 31 WLYSWSHPRQRGRLRAPPAALDLRPEPSPSSDSDDEDAVGASRSS-----------GRST 79
Query: 145 MGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGF 204
M I+ +L++ GY G E +GS+ED+F ++G+LPNARGGF
Sbjct: 80 MSLILSRLRRAGYSG-----------EDPRAAAPPHPPRGSVEDVFRADDGVLPNARGGF 128
Query: 205 SKESPLGLGEEVGSDGEVKFPWEKR--KEEVAEGRWLVKRRSSR--TSLAELTLPESELR 260
+ +E + G+ +FPWE+ E A RS+R T +AELTLP +ELR
Sbjct: 129 DAD------DEERALGDARFPWERPMPPPEAAP-------RSARSPTWMAELTLPAAELR 175
Query: 261 RLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERK 320
RLR+ + KS+T++ GAG+T+ +V+ I EKWKT E+VR+K+ G PALNM+ HEILERK
Sbjct: 176 RLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERK 235
Query: 321 TGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGN 380
TGGLVIWRSGT+VSLYRGV Y+ P + K+N S S A D I
Sbjct: 236 TGGLVIWRSGTSVSLYRGVDYDEPE---PTKKSKKN-----SQSLAMDFPI--------- 278
Query: 381 SLSAAADKTAQDPSNF--DSYNNVHATQVNL-ETASEEQETDFVREVKYEDEVEKLLDGL 437
K + +PS ++ N+V + V L A++E+ E+KYEDE++KLLD L
Sbjct: 279 -------KGSSNPSLLPTETANSVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLDEL 331
Query: 438 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 497
GPRYTDWPG DPLPVDAD+LP +PGY+PPFRVLPYGVR +L+R++ TNL+RLAR LPPH
Sbjct: 332 GPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPH 391
Query: 498 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557
FALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSERM EDIKKLTGG +LSRN +
Sbjct: 392 FALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNE 451
Query: 558 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTL 617
F+VFYRGK+FLS ++ E L ERERLAKSLQDEEE R AS F S ET + AGTL
Sbjct: 452 FIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYF--SSAETYAQPTVAGTL 509
Query: 618 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 677
ETL+ANS++G + D++H + + R E RHA LV+KLE KL+ A++K+ +AER L KVE
Sbjct: 510 GETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVLGKVE 569
Query: 678 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+L+P E PE+ITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 570 TALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGR 607
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 221 EVKFPWEKRKEEVAE---GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKG 277
E K ++K E AE G+ R + S T+ + E R L + K+ +
Sbjct: 548 EWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGR 607
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAV 333
G+ ++ +H WK E+V++ ++ ++KR+ LE ++GG+++ G A+
Sbjct: 608 RGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAI 667
Query: 334 SLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
++RG +Y PS + + + + A S+ + Q H+ +S
Sbjct: 668 VVFRGKNYRRPSSLRPRNLLSKRKALARSI----ELQRHQALS 706
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 340/686 (49%), Positives = 438/686 (63%), Gaps = 83/686 (12%)
Query: 49 QNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSS---WLVKWNKPNKYNRLK 105
++ +N+ PP + S F + S+S+ WL W+ P + RL+
Sbjct: 667 RSLPTNATLCHPPPSMAMASSPACHFRHPPRLRLLLPLSTSAPHPWLYSWSHPRQRGRLR 726
Query: 106 PPQASVNYRKNNVDLS------ALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVG 159
P A+++ R S A+G +R+ G STM I+ +L++ GY G
Sbjct: 727 APPAALDLRPEPSPSSDSDDEDAVGASRSS-----------GRSTMSLILSRLRRAGYSG 775
Query: 160 DGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSD 219
E +GS+ED+F ++G+LPNARGGF + +E +
Sbjct: 776 -----------EDPRAAAPPHPPRGSVEDVFRADDGVLPNARGGFDAD------DEERAL 818
Query: 220 GEVKFPWEKR--KEEVAEGRWLVKRRSSR--TSLAELTLPESELRRLRNLTFQTKSKTRI 275
G+ +FPWE+ E A RS+R T +AELTLP +ELRRLR+ + KS+T++
Sbjct: 819 GDARFPWERPMPPPEAAP-------RSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKV 871
Query: 276 KGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSL 335
GAG+T+ +V+ I EKWKT E+VR+K+ G PALNM+ HEILERKTGGLVIWRSGT+VSL
Sbjct: 872 GGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGTSVSL 931
Query: 336 YRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAAD---KTAQD 392
YRGV Y+ P + T K NS S A D K + +
Sbjct: 932 YRGVDYDEP--------------------EPTKKS-------KKNSQSLAMDFPIKGSSN 964
Query: 393 PSNF--DSYNNVHATQVNL-ETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
PS ++ N+V + V L A++E+ E+KYEDE++KLLD LGPRYTDWPG DP
Sbjct: 965 PSLLPTETANSVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLDELGPRYTDWPGSDP 1024
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP +PGY+PPFRVLPYGVR +L+R++ TNL+RLAR LPPHFALGRSRQLQGL
Sbjct: 1025 LPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPHFALGRSRQLQGL 1084
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A AM+KLWEKSSIAKIALKRGVQLTTSERM EDIKKLTGG +LSRN +F+VFYRGK+FLS
Sbjct: 1085 ANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 1144
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGK 629
++ E L ERERLAKSLQDEEE R AS F S ET + AGTL ETL+ANS++G
Sbjct: 1145 SELAEVLLERERLAKSLQDEEEARRKAASYF--SSAETYAQPTVAGTLGETLEANSKYGT 1202
Query: 630 RLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADP 689
+ D++H + + R E RHA LV+KLE KL+ A++K+ +AER L KVE +L+P E P
Sbjct: 1203 KHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPP 1262
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGK 715
E+ITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 1263 ETITDEERFMFRKLGLRMKAFLLLGR 1288
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 221 EVKFPWEKRKEEVAE---GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKG 277
E K ++K E AE G+ R + S T+ + E R L + K+ +
Sbjct: 1229 EWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGR 1288
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAV 333
G+ ++ +H WK E+V++ ++ ++KR+ LE ++GG+++ G A+
Sbjct: 1289 RGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAI 1348
Query: 334 SLYRGVSYEVPS 345
++RG +Y PS
Sbjct: 1349 VVFRGKNYRRPS 1360
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 320/634 (50%), Positives = 416/634 (65%), Gaps = 56/634 (8%)
Query: 86 CSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGG-ST 144
C+ WL W++P + L+PP +++ R S D + VG G ST
Sbjct: 43 CAQYPWLSAWSRPRRG--LRPPAPALDLRPEPSPTSG------SDDEDAVGTSRHSGRST 94
Query: 145 MGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGF 204
M I+ +LK+ GY + + R +GS+ED+F ++G+LPNARGGF
Sbjct: 95 MSLILHRLKRAGYSLEAQIPPSTFSQHPR---------RGSVEDVFRADDGVLPNARGGF 145
Query: 205 SKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRN 264
++ L + +FPWE+ + S +AELTLPE ELRRLR+
Sbjct: 146 DDDAESSLMD-------ARFPWERPMPPPEA---AARAARSPAWMAELTLPEPELRRLRH 195
Query: 265 LTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGL 324
+ KSKT++ GAG+T+ +V I EKW+T E+VR+K+ G PALNM+ HEILERKTGGL
Sbjct: 196 AAMRIKSKTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPALNMRLFHEILERKTGGL 255
Query: 325 VIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSA 384
VIWRSGT+VSLYRGV+Y+VP + + T + + + S+ G +
Sbjct: 256 VIWRSGTSVSLYRGVAYDVPDT--------------TKGTNRTWQDVGMKSSIKGPPI-- 299
Query: 385 AADKTAQDPSNF--DSYNNVHATQVNLETASEEQET-DFVREVKYEDEVEKLLDGLGPRY 441
PS+ + N++ + L + +E++E + V E+KYE+E+ +LLD LGPRY
Sbjct: 300 --------PSSIPNEKVNSMQGSNGGLVSNTEKEEAIETVPEIKYEEEIGRLLDELGPRY 351
Query: 442 TDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALG 501
+DWPG +PLPVDAD+LP +PGY+PPFRVLPYGVR +L+RK+ TNL+RLAR LPPHFALG
Sbjct: 352 SDWPGSNPLPVDADLLPATIPGYKPPFRVLPYGVRRSLSRKDTTNLRRLARGLPPHFALG 411
Query: 502 RSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVF 561
RSRQLQGLA AM+KLWE+SSIAK+ALKRGVQLTTSERM EDIKKLTGG +LSRN DF+VF
Sbjct: 412 RSRQLQGLAAAMVKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFVVF 471
Query: 562 YRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETL 621
YRGK+FLS ++ EAL ERER KSLQD EEQARL A S E +S AGTL ETL
Sbjct: 472 YRGKDFLSTELAEALLERERSMKSLQD-EEQARLNAKLSFTSSTEAFIESTVAGTLGETL 530
Query: 622 DANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLK 681
+ANS++G L D+H + + R E +HA LV+KLE KLA AE+++ +AER L KVE +LK
Sbjct: 531 EANSKYGNELVDNHVDKMTRTVEAAKHADLVRKLEWKLALAEKRIAKAERVLGKVETALK 590
Query: 682 PAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
P E PE+ITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 591 PTEDTKPPETITDEERFMFRKLGLRMKAFLLLGR 624
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ + E R L + K+ + G+ ++ +H WK E+V++ ++ ++KR
Sbjct: 600 TITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKR 659
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
LE ++GG+++ G A+ ++RG Y+ PS+ + + + + A S+
Sbjct: 660 TALSLEVESGGVLVSVDKVSKGYAIVVFRGKDYKRPSMLRPRNLLSKRKALARSI 714
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 323/634 (50%), Positives = 415/634 (65%), Gaps = 61/634 (9%)
Query: 91 WLVKWNKPNKYNRLK---PPQASVNYRKNNVDLS------ALGFARTDSDGNGVGGVDDG 141
WL W+ P + +R + PP +++ R S A+G +R+ G
Sbjct: 31 WLSAWSHPGQRSRSRLRAPPPPALDLRPEPSPSSDSDDEDAVGTSRSS-----------G 79
Query: 142 GSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNAR 201
STM I+ +L++ GY D R +GS+ED+F ++G+LPNAR
Sbjct: 80 RSTMSLILSRLRRAGY--------SPAEDPRAAAASSHHPPRGSVEDVFRADDGVLPNAR 131
Query: 202 GGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRR 261
GGF EE+G + +FPWE+ R S T +AELTLP +ELRR
Sbjct: 132 GGFD-----AADEELG---DARFPWERPMPPPEAAPPRATR--SPTWMAELTLPAAELRR 181
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
LR+ + KS+T++ GAG+T+ +V+ I EKWKT E+VR+K+ G PALNM+ HEILERKT
Sbjct: 182 LRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKT 241
Query: 322 GGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNS 381
GGLVIWRSGT+VSLYRGV Y+ P E S + + I S N
Sbjct: 242 GGLVIWRSGTSVSLYRGVDYDEP------------ETTKGSKKNSQSLSMKSPIKGSPNP 289
Query: 382 LSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRY 441
+K +S + + V+ A +E+ E+KYEDE++KLLD LGPRY
Sbjct: 290 PLPPTEKA-------NSVQDRNGPLVS--NAGKEEIVVQAPEIKYEDEIDKLLDELGPRY 340
Query: 442 TDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALG 501
TDWPG DPLPVDAD+LP VPGY+PPFRVLPYGVR +L+R + TNL+RLAR LPPHFALG
Sbjct: 341 TDWPGSDPLPVDADLLPATVPGYKPPFRVLPYGVRPSLSRMDTTNLRRLARGLPPHFALG 400
Query: 502 RSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVF 561
RSRQLQGLA AM+KLWEKSSIAK+ALKRGVQLTTSERM EDIKKLTGG +LSRN +F+VF
Sbjct: 401 RSRQLQGLANAMVKLWEKSSIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVF 460
Query: 562 YRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETL 621
YRGK+FLS ++ E L ERERLAKSLQDEEE AR +A+++ S E + AGTL ETL
Sbjct: 461 YRGKDFLSSELAEVLLERERLAKSLQDEEE-ARRKAASYFSSSAEKYVQPTVAGTLGETL 519
Query: 622 DANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLK 681
+ANS++G +LD++H++ + R E RHA LV+KLE KL+ A++K+ +AER L KVE +L+
Sbjct: 520 EANSKYGTKLDENHEDKMARTVEAARHADLVRKLEWKLSLAQKKMEKAERVLGKVETALR 579
Query: 682 PAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
P E + PE+ITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 580 PTE-DSRPETITDEERFMFRKLGLRMKAFLLLGR 612
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ + E R L + K+ + G+ ++ +H WK E+V++ ++ ++KR
Sbjct: 588 TITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKR 647
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG+++ G A+ ++RG +Y PS + + + + A S+ +
Sbjct: 648 IALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSI----E 703
Query: 369 KQIHKQIS 376
Q H+ +S
Sbjct: 704 LQRHQALS 711
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 316/627 (50%), Positives = 412/627 (65%), Gaps = 51/627 (8%)
Query: 91 WLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDG-NGVGGVDDGG-STMGKI 148
WL W++P + L+PP +++ R S DSD + VG G STM I
Sbjct: 32 WLSAWSRPRRG--LRPPAPALDLRPEPSPTS-------DSDEEDSVGTSRHAGRSTMSLI 82
Query: 149 VEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKES 208
+ +L++ GY + R ++GS+ED+F ++G+LPNARGGF ++
Sbjct: 83 LRRLQRAGYSPEPQA--------AHAATASRHPQRGSVEDVFRADDGVLPNARGGFDDDA 134
Query: 209 PLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQ 268
L + +FPWE+ + + S +AELTLPE+ELRRLR+ T +
Sbjct: 135 ESSLVD-------ARFPWER---PMPPPEAAARATKSPVWMAELTLPEAELRRLRHATMR 184
Query: 269 TKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWR 328
KS+ ++ GAG+T+ +V I EKWKT E+VR+K+ G PALNM+ HEILERKTGGLVIWR
Sbjct: 185 IKSRIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPALNMRLFHEILERKTGGLVIWR 244
Query: 329 SGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADK 388
SGT+VSLYRGV+Y+VP + RN QA + I +SL
Sbjct: 245 SGTSVSLYRGVAYDVPETT---KGTNRN-------WQALGMKSSINIPPMPSSLPNEKVN 294
Query: 389 TAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCD 448
QD + A N ETA + V E+KYE+E+++LLD LGPRY+DWPG +
Sbjct: 295 GMQD-----RVGALVAVTENEETA------ETVPEIKYEEEIDRLLDELGPRYSDWPGSN 343
Query: 449 PLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQG 508
PLPVDAD+LP VPGY+PPFRVLPYGVR +L+RK+ TNL+RL R LPPHFALGRSRQLQG
Sbjct: 344 PLPVDADLLPATVPGYKPPFRVLPYGVRRSLSRKDTTNLRRLGRGLPPHFALGRSRQLQG 403
Query: 509 LAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFL 568
LA AM+KLWE+SSIAKIALKRGVQLTTSERM ED+KKLTGG +LSRN DF+VFYRGK+FL
Sbjct: 404 LAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDLKKLTGGVMLSRNNDFVVFYRGKDFL 463
Query: 569 SPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWG 628
S ++ E L ERER KSLQD EEQARL + S E + AGTL+ETL+ANS++G
Sbjct: 464 SSELAEVLLERERSMKSLQD-EEQARLDRTPSFASSTEAFIEPSVAGTLEETLEANSKYG 522
Query: 629 KRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQAD 688
++D++H + + + E +HA +V+KLE KL+ AE+++ +AER L KVE +LKP+E
Sbjct: 523 NKVDENHMDKMTKTVEAAKHADVVRKLEWKLSLAEKRIAKAERVLGKVETALKPSEDTNP 582
Query: 689 PESITDEERFMFRKLGLRMKAFLLLGK 715
E+IT+EERFMFRKLGLRMKAFLLLG+
Sbjct: 583 HETITEEERFMFRKLGLRMKAFLLLGR 609
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ E E R L + K+ + G+ ++ +H WK E+V++ ++ +KR
Sbjct: 585 TITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKR 644
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVS---- 364
+ LE ++GG+++ G A+ ++RG Y PS+ + + + + A S+
Sbjct: 645 IALSLEVESGGILVSVDKVSKGYAIVVFRGKDYRRPSMLRPRNLLSKRKALARSIEIQRM 704
Query: 365 QATDKQIHK 373
QA ++ I K
Sbjct: 705 QALNRHIGK 713
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 293/538 (54%), Positives = 374/538 (69%), Gaps = 44/538 (8%)
Query: 184 GSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRR 243
GS+ED+F V++G++PNARGGF ++ L + +FPWE G +
Sbjct: 116 GSVEDVFRVDDGVVPNARGGFDDDAESALVD-------ARFPWELPMPPPEAGPRAAR-- 166
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ +AELTLPE+ELRRLR+ + KS+ ++ GAG+T+ +V+ I ++W+ E+VR+K+
Sbjct: 167 -SKAWMAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVT 225
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
G PALNM+ HEILERKTGGLVIWRSGT+VSLYRGV+Y++P P
Sbjct: 226 GTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDIPE-------------PTKGT 272
Query: 364 SQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNN--VHATQVN----LETASEEQE 417
S+ N+ + + ++P N V+ Q N + A ++
Sbjct: 273 SK--------------NTQTLGMKSSIKEPPGHSLLPNEKVNEMQDNNGALVSNAEKDTL 318
Query: 418 TDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRS 477
+ V E+KYEDE++KLLD LGPRY DWP DP PVDAD+LP VPGY+PPFRVLPYGVR
Sbjct: 319 VEPVPEIKYEDEIDKLLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRP 378
Query: 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 537
+L+R++ TNL+RLAR LPPHFALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSE
Sbjct: 379 SLSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSE 438
Query: 538 RMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA 597
RM EDIKKLTGG +LSRN DF+VFYRGK+FLSP++ E L ERER AKSLQD EEQARL A
Sbjct: 439 RMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQD-EEQARLNA 497
Query: 598 SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEK 657
++ E + AGTL ETL+ANS++G +LD++++ + R E RHA LV+KLE
Sbjct: 498 ASSFSSRTEAPVEPTVAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADLVRKLEW 557
Query: 658 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KL A++K+ +AER L KVE +LKP E PE+ITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 558 KLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGR 615
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/477 (57%), Positives = 343/477 (71%), Gaps = 34/477 (7%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
S+ +AELTLPE+ELRRLR+ + KS+ ++ GAG+T+ +V+ I ++W+ E+VR+K+ G
Sbjct: 13 SKAWMAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTG 72
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVS 364
PALNM+ HEILERKTGGLVIWRSGT+VSLYRGV+Y++P P S
Sbjct: 73 TPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDIPE-------------PTKGTS 119
Query: 365 QATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNN--VHATQVN----LETASEEQET 418
+ N+ + + ++P N V+ Q N + A ++
Sbjct: 120 K--------------NTQTLGMKSSIKEPPGHSLLPNEKVNEMQDNNGALVSNAEKDTLV 165
Query: 419 DFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRST 478
+ V E+KYEDE++KLLD LGPRY DWP DP PVDAD+LP VPGY+PPFRVLPYGVR +
Sbjct: 166 EPVPEIKYEDEIDKLLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPS 225
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
L+R++ TNL+RLAR LPPHFALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSER
Sbjct: 226 LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSER 285
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS 598
M EDIKKLTGG +LSRN DF+VFYRGK+FLSP++ E L ERER AKSLQD EEQARL A+
Sbjct: 286 MAEDIKKLTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQD-EEQARLNAA 344
Query: 599 AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKK 658
+ E + AGTL ETL+ANS++G +LD++++ + R E RHA LV+KLE K
Sbjct: 345 SSFSSRTEAPVEPTVAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADLVRKLEWK 404
Query: 659 LARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
L A++K+ +AER L KVE +LKP E PE+ITDEERFMFRKLGLRMKAFLLLG+
Sbjct: 405 LQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGR 461
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/500 (48%), Positives = 334/500 (66%), Gaps = 28/500 (5%)
Query: 217 GSDGEVKFPWEKRK--EEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTR 274
G+ ++ PW++R+ + V W RR++R +AE +PE ELRRL+N+ + + +
Sbjct: 232 GNSSLIELPWKRREGLQPVERDGW--GRRNTR--MAERMVPEHELRRLKNIALRMLERIK 287
Query: 275 IKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVS 334
+ AG+TQ++VD IHEKW+ E+V+LK EG + NMKR HEILE +TGGLVIWR+G++V
Sbjct: 288 VGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVV 347
Query: 335 LYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPS 394
LYRG++Y++ VQ + +R+ + S SQ I + I + + + D +
Sbjct: 348 LYRGMAYKLHCVQSYIK-QERDNVNISEYSQDAANVIIQDIGV--KDIVKTTESVISDSA 404
Query: 395 NFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDA 454
+ L+ SEE+ D E+ LLD LGPR+ DW G +PLPVDA
Sbjct: 405 RY------------LKDLSEEELMDL-------SELNHLLDELGPRFKDWSGREPLPVDA 445
Query: 455 DMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMI 514
D+LP +V Y+PPFR+LPYG+R L +E T ++RLAR +PPHFALGRSR+LQGLA+AM+
Sbjct: 446 DLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMV 505
Query: 515 KLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTE 574
KLWE+S+IAKIA+KRGVQ T ++RM E++K LTGGTL+SRNKD++VFYRG +FL P V E
Sbjct: 506 KLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPHVME 565
Query: 575 ALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDS 634
AL+ER +L QDEEEQAR RASA + + + AGTL ETL A SRWG +
Sbjct: 566 ALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEPSEE 625
Query: 635 HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITD 694
++R++ + RHA LV+ + KKLA A+ KL + E+AL KV+E L+PAE D E+++D
Sbjct: 626 DVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSD 685
Query: 695 EERFMFRKLGLRMKAFLLLG 714
EERF+FRK+GL MK FLLLG
Sbjct: 686 EERFLFRKIGLSMKPFLLLG 705
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
TL + E R + K + G+ V+ +H WK E+V++ ++G +K
Sbjct: 682 TLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKH 741
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG+++ G A+ +YRG +Y+ P K + + + A S+
Sbjct: 742 IAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQRH 801
Query: 369 KQIHKQIS 376
+ + IS
Sbjct: 802 EALKHHIS 809
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/500 (48%), Positives = 334/500 (66%), Gaps = 28/500 (5%)
Query: 217 GSDGEVKFPWEKRK--EEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTR 274
G+ ++ PW++R+ + V W RR++R +AE +PE ELRRL+N+ + + +
Sbjct: 229 GNSSLIELPWKRREGLQPVERDGW--GRRNTR--MAERMVPEHELRRLKNIALRMLERIK 284
Query: 275 IKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVS 334
+ AG+TQ++VD IHEKW+ E+V+LK EG + NMKR HEILE +TGGLVIWR+G++V
Sbjct: 285 VGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVV 344
Query: 335 LYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPS 394
LYRG++Y++ VQ + +R+ + S SQ I + I + + + D +
Sbjct: 345 LYRGMAYKLHCVQSYIK-QERDNVNISEYSQDAANVIIQDIGV--KDIVKTTESVISDSA 401
Query: 395 NFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDA 454
+ L+ SEE+ D E+ LLD LGPR+ DW G +PLPVDA
Sbjct: 402 RY------------LKDLSEEELMDL-------SELNHLLDELGPRFKDWSGREPLPVDA 442
Query: 455 DMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMI 514
D+LP +V Y+PPFR+LPYG+R L +E T ++RLAR +PPHFALGRSR+LQGLA+AM+
Sbjct: 443 DLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMV 502
Query: 515 KLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTE 574
KLWE+S+IAKIA+KRGVQ T ++RM E++K LTGGTL+SRNKD++VFYRG +FL P V E
Sbjct: 503 KLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPHVME 562
Query: 575 ALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDS 634
AL+ER +L QDEEEQAR RASA + + + AGTL ETL A SRWG +
Sbjct: 563 ALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEPSEE 622
Query: 635 HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITD 694
++R++ + RHA LV+ + KKLA A+ KL + E+AL KV+E L+PAE D E+++D
Sbjct: 623 DVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSD 682
Query: 695 EERFMFRKLGLRMKAFLLLG 714
EERF+FRK+GL MK FLLLG
Sbjct: 683 EERFLFRKIGLSMKPFLLLG 702
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
TL + E R + K + G+ V+ +H WK E+V++ ++G +K
Sbjct: 679 TLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKH 738
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG+++ G A+ +YRG +Y+ P K + + + A S+
Sbjct: 739 IAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQRH 798
Query: 369 KQIHKQIS 376
+ + IS
Sbjct: 799 EALKHHIS 806
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 254/564 (45%), Positives = 348/564 (61%), Gaps = 45/564 (7%)
Query: 160 DGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEV--- 216
DGD DGD N E G E S +D N +K+ LG E V
Sbjct: 277 DGD-DGDFGNIEVCNDGHCDSFENLSCKD---------SNGVVSVTKKQ-LGDFENVEVS 325
Query: 217 --GSDGEVKFPWEKRK--EEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSK 272
G + PW++ + + E + R+ S T LAE LPE EL+RLRN+ + +
Sbjct: 326 NNGVSNSNELPWKRTSGLDSLGEDK---SRKKSNTDLAERMLPEHELKRLRNVALRMLER 382
Query: 273 TRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
++ G+TQ +VD IHEKWK E+V+LK E + NMKR HEILE +TGGL+IWRSG++
Sbjct: 383 IKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRTGGLIIWRSGSS 442
Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG-NSLSAAADKTAQ 391
V +YRG +Y+ VQ Y + V Q ++ + S +G L+ +
Sbjct: 443 VVMYRGTTYKFQCVQ----SYTKQNEAGMDVLQYAEEATNSATSSAGMKDLARTMESIIP 498
Query: 392 DPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLP 451
D + + L+ S+E+ DF E+ LLD LGPRY DW G +PLP
Sbjct: 499 DAAKY------------LKDLSQEELMDF-------SELNHLLDELGPRYKDWCGREPLP 539
Query: 452 VDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAV 511
VDAD+LP +VPGY+ P R+LPYGV+ L+ K TN +RLAR PPHF LGR+R+LQGLA
Sbjct: 540 VDADLLPAVVPGYKSPLRLLPYGVKPCLSNKNTTNFRRLARTTPPHFVLGRNRELQGLAN 599
Query: 512 AMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPD 571
AM+KLWE+S+IAKIA+KRGVQ T +E M E++K+LTGGTLLSRNK+++VFYRG +FL P
Sbjct: 600 AMVKLWERSAIAKIAIKRGVQYTRNEIMAEELKRLTGGTLLSRNKEYIVFYRGNDFLPPV 659
Query: 572 VTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRL 631
+ E L+ER +LA QDEE+QAR SAF+ S++T + AGTL ET+ A SRWG +
Sbjct: 660 INETLKERRKLAFLYQDEEDQARQMTSAFIGSSVKTTKGPLVAGTLVETVAAISRWGNQP 719
Query: 632 DDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPES 691
E ++R++ + RHA LV+ LE KLA+A+ KL ++E+ L+KV+E+L+P E D E+
Sbjct: 720 SSEDVEEMIRDSALARHASLVKHLENKLAQAKGKLKKSEKDLAKVQENLEPTELPTDLET 779
Query: 692 ITDEERFMFRKLGLRMKAFLLLGK 715
I+DEERF+FRK+GL MK +L LG+
Sbjct: 780 ISDEERFLFRKIGLSMKPYLFLGR 803
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 66/337 (19%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A+V + W+ S I ++ I+ G + M E L+R TGG ++ R+ + YR
Sbjct: 596 GLANAMVKL----WERSAIAKIAIKRGVQYTRNEIMAEELKRLTGGTLLSRNKEYIVFYR 651
Query: 338 GVSYEVPSVQ--LNKR-----IYKRNELPASSVSQA---TDKQIHKQISMSGNSLS--AA 385
G + P + L +R +Y+ E A ++ A + + K ++G + AA
Sbjct: 652 GNDFLPPVINETLKERRKLAFLYQDEEDQARQMTSAFIGSSVKTTKGPLVAGTLVETVAA 711
Query: 386 ADKTAQDPSNFDSYNNV-------HATQV-NLETASEEQETDFVREVKYEDEVEKLLDGL 437
+ PS+ D + HA+ V +LE + + K E ++ K+ + L
Sbjct: 712 ISRWGNQPSSEDVEEMIRDSALARHASLVKHLENKLAQAKGKLK---KSEKDLAKVQENL 768
Query: 438 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 497
P LP D + T++ +E +++ + P+
Sbjct: 769 EPT--------ELPTDLE----------------------TISDEERFLFRKIGLSMKPY 798
Query: 498 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557
LGR G M W+ + KI ++R + + + ++ +GG L+S ++
Sbjct: 799 LFLGRRGVFDGTIENMHLHWKYRELVKIIVERK-GIAQVKHIAISLEAESGGVLVSVDRT 857
Query: 558 F----LVFYRGKNFLSPDVTEA---LQERERLAKSLQ 587
++ YRGKN++ P L R+ LA+S++
Sbjct: 858 TKGYAIIVYRGKNYMRPQAMRPENLLTRRQALARSVE 894
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ + E R + K + G+ ++ +H WK E+V++ +E +K
Sbjct: 779 TISDEERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKH 838
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
+ LE ++GG+++ G A+ +YRG +Y P + + R + A SV
Sbjct: 839 IAISLEAESGGVLVSVDRTTKGYAIIVYRGKNYMRPQAMRPENLLTRRQALARSV 893
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/545 (44%), Positives = 351/545 (64%), Gaps = 42/545 (7%)
Query: 178 ERVIEKGSIEDIFYVEEGLL----PNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEE- 232
+R + +GS+ I G + PNA S V G V PWE+ +E+
Sbjct: 278 DRSMRQGSVNTIVKTLRGSMEESDPNAAIELSNAEDF-----VQKLGPVLLPWEREEEDD 332
Query: 233 --VAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHE 290
+ GR V RRS+ T LAE T+PE ELRRLR+ + K + ++ G+TQ +V+ IH
Sbjct: 333 EAFSGGR--VGRRSN-TELAERTIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHR 389
Query: 291 KWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNK 350
KWK E+V+++ EG P+LNMKR H++LE +TGG+VIWRSG +V LYRG++Y + VQ
Sbjct: 390 KWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVIWRSGRSVVLYRGMNYNLQCVQ--- 446
Query: 351 RIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLE 410
S +++ + K++ + +++S+ QD + +LE
Sbjct: 447 -----------SYAKSIETDSGKEVDDASSAVSSHGGHNLQDSREAGAKRLTSTENFSLE 495
Query: 411 TASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRV 470
++ ET F +++ LD LGPRY DW G P+PVDAD+LPG+V GY+PPFRV
Sbjct: 496 SS----ET-F--------DIDNFLDQLGPRYRDWSGRGPVPVDADLLPGVVHGYKPPFRV 542
Query: 471 LPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRG 530
LPY ++STL KE T L+RL+R PHFALGR+R+ QGLA AM+KLWEKS+IAKIA+KRG
Sbjct: 543 LPYKIKSTLRDKEMTTLRRLSRQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRG 602
Query: 531 VQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE 590
V T ++RM E+IKKLTGG LLSRNK+++VFYRG +F++P V + L E++ A + QDEE
Sbjct: 603 VPNTCNDRMAEEIKKLTGGVLLSRNKEYIVFYRGNDFIAPKVRQVLVEKQEQAITQQDEE 662
Query: 591 EQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAY 650
E ARL+ASA ++ + I+ AGTL ET +A SRWG L+D +E ++ + +H
Sbjct: 663 ELARLKASASIITVPKGIKGPLVAGTLTETTEAKSRWGMSLNDKQREEEMKRLSLLKHTS 722
Query: 651 LVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAF 710
L++ L++KL A+ K+ +AERAL+KV+E L PAE D E++TDEERF+FR++GL+M+AF
Sbjct: 723 LLKNLKRKLILAKTKVAKAERALAKVQEFLSPAELPTDLETVTDEERFLFRRIGLKMRAF 782
Query: 711 LLLGK 715
L+LG+
Sbjct: 783 LMLGR 787
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 52/364 (14%)
Query: 253 TLPESELRRLRNLTFQTKSKTRI----KGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPA 307
TL + E+ LR L+ QT + + GL A+V + W+ S I ++ I+ G P
Sbjct: 550 TLRDKEMTTLRRLSRQTAPHFALGRNREHQGLAAAMVKL----WEKSAIAKIAIKRGVPN 605
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRG---VSYEVPSVQLNKR---IYKRNELPAS 361
RM E +++ TGG+++ R+ + YRG ++ +V V + K+ I +++E +
Sbjct: 606 TCNDRMAEEIKKLTGGVLLSRNKEYIVFYRGNDFIAPKVRQVLVEKQEQAITQQDEEELA 665
Query: 362 SVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFV 421
+ +A+ I + G ++ +T + S + N + ++ S + T +
Sbjct: 666 RL-KASASIITVPKGIKGPLVAGTLTETTEAKSRWGMSLNDKQREEEMKRLSLLKHTSLL 724
Query: 422 REVK-----YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVR 476
+ +K + +V K L + ++ LP D +
Sbjct: 725 KNLKRKLILAKTKVAKAERALA-KVQEFLSPAELPTDLE--------------------- 762
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
T+ +E +R+ + LGR G M W+ + KI + RG
Sbjct: 763 -TVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIIV-RGKSFAQV 820
Query: 537 ERMVEDIKKLTGGTLLSRNKD----FLVFYRGKNFLSPDVTEA---LQERERLAKSLQDE 589
+ + ++ + G L+S +K ++FYRGKN+ P + + L R+ LA+S++ +
Sbjct: 821 KHIAISLEAESEGVLISLDKTSKGYAIIFYRGKNYRRPQIMKPRNLLTRRQALARSIELQ 880
Query: 590 EEQA 593
+A
Sbjct: 881 RREA 884
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/498 (46%), Positives = 329/498 (66%), Gaps = 31/498 (6%)
Query: 220 GEVKFPWEKRKE--EVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKG 277
G PWE+ +E E G V+R S T LAE ++PE ELRRLR+ + K + ++
Sbjct: 323 GPALLPWEREEEDDEAFSGGRAVRR--SNTELAERSIPEPELRRLRDTALRMKERIKVGP 380
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+TQ +V+ IH KWK E+V+++ EG P+LNMKR H++LE +TGG+VIWRSG +V LYR
Sbjct: 381 GGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVIWRSGRSVVLYR 440
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
G++Y VQ + + + VS A + S G++L A S D
Sbjct: 441 GMNYNFQCVQSYAKFIEIDS--GKGVSDANSAVL----SHDGHNLQA---------SRAD 485
Query: 398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 457
++ +T +F E +++ LD LGPRY DW G P+PVDAD+L
Sbjct: 486 GMKSLTST------------GNFSLESSETFDIDNFLDQLGPRYKDWSGRGPIPVDADLL 533
Query: 458 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 517
PG+V GY+PPFRVLPY ++STL KE T L+RLAR PHFALGR+R+ QGLA AM+KLW
Sbjct: 534 PGVVHGYKPPFRVLPYKIKSTLRDKEMTTLRRLARQTAPHFALGRNREHQGLAAAMVKLW 593
Query: 518 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 577
EKS+IAKIA+KRG+ T ++RM E+IKKLTGG LLSRNK+F+VFYRG +F++P V + L
Sbjct: 594 EKSAIAKIAIKRGIPNTCNDRMAEEIKKLTGGVLLSRNKEFIVFYRGNDFIAPKVRQVLV 653
Query: 578 ERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKE 637
E++ A + QDEEE ARL+ASA ++ + I+ AGTL ET +A SRWGK ++D +E
Sbjct: 654 EKQEQAITQQDEEELARLKASASIITIPKDIKGPLVAGTLAETTEAKSRWGKSVNDKQRE 713
Query: 638 NLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEER 697
++ + +H L++ L++KL A+ K+ +AE+AL+KV+E L PAE D E++TDEER
Sbjct: 714 EEMKHLSLLKHTSLLKNLKRKLILAKTKVAKAEKALAKVQEFLTPAELPTDLETVTDEER 773
Query: 698 FMFRKLGLRMKAFLLLGK 715
F+FR++GL+M+AFL+LG+
Sbjct: 774 FLFRRIGLKMRAFLMLGR 791
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 52/364 (14%)
Query: 253 TLPESELRRLRNLTFQTKSKTRI----KGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPA 307
TL + E+ LR L QT + + GL A+V + W+ S I ++ I+ G P
Sbjct: 554 TLRDKEMTTLRRLARQTAPHFALGRNREHQGLAAAMVKL----WEKSAIAKIAIKRGIPN 609
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRG---VSYEVPSVQLNKR---IYKRNELPAS 361
RM E +++ TGG+++ R+ + YRG ++ +V V + K+ I +++E +
Sbjct: 610 TCNDRMAEEIKKLTGGVLLSRNKEFIVFYRGNDFIAPKVRQVLVEKQEQAITQQDEEELA 669
Query: 362 SVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFV 421
+ +A+ I + G ++ +T + S + N + ++ S + T +
Sbjct: 670 RL-KASASIITIPKDIKGPLVAGTLAETTEAKSRWGKSVNDKQREEEMKHLSLLKHTSLL 728
Query: 422 REVK-----YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVR 476
+ +K + +V K L + ++ LP D +
Sbjct: 729 KNLKRKLILAKTKVAKAEKALA-KVQEFLTPAELPTDLE--------------------- 766
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
T+ +E +R+ + LGR G M W+ + KI + RG +
Sbjct: 767 -TVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIVV-RGKSFAQA 824
Query: 537 ERMVEDIKKLTGGTLLSRNKD----FLVFYRGKNFLSPDVTEA---LQERERLAKSLQDE 589
+ + ++ + G L+S +K ++FYRGKN+ P + + L R+ LA+S++ +
Sbjct: 825 KHIAISLEAESEGVLISLDKTTKGYVIIFYRGKNYRRPQIMKPRNLLTRRQALARSIELQ 884
Query: 590 EEQA 593
+A
Sbjct: 885 RREA 888
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/496 (47%), Positives = 326/496 (65%), Gaps = 34/496 (6%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
G V PWE+ EG R+ S T LAE T+PE ELRRLR++ + K + R+ G
Sbjct: 313 GPVLLPWER------EGDVDRPRKRSNTELAERTIPEHELRRLRDVALRMKERMRVGPGG 366
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+TQ +V+ IH+KW+ E+V+L+ EG P+LNMKR H+ILE +TGG+VIWRSG +V LYRG+
Sbjct: 367 VTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIWRSGRSVVLYRGM 426
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
+Y + VQ S +Q T+ K++S NS+ + S D
Sbjct: 427 NYNLRCVQ--------------SYTQTTEVNFDKRVS--SNSVEPIHVEHKFQKSGADGL 470
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
N A VN +SE+ F +++ LD LGPRY DW G P+PVDAD+LPG
Sbjct: 471 NR-SAYIVN---SSEKPTETF--------DIDSFLDQLGPRYKDWSGRGPIPVDADLLPG 518
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+VPGY+ PFR+LPY V+STL KE T L+RLAR PHFALGR+R+ QGLA A++KLWEK
Sbjct: 519 VVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEK 578
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
SSIAKIA+KRGV T ++RM E+I+KLTGG LLSRNK+++VFYRG +F++P V + L E+
Sbjct: 579 SSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSRNKEYIVFYRGNDFITPKVRQVLVEK 638
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
+ A + QDEEE ARL+ASA + + + AGTL ET +A SRWG ++ ++
Sbjct: 639 QEQAITWQDEEELARLKASASISVKPKVFKNPPVAGTLAETREAKSRWGDSINAELRKKE 698
Query: 640 VREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFM 699
+ +H L++ L++KL A+ K+++AE+AL+KV+E L PAE D E++TDEERF+
Sbjct: 699 KNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELPTDLETVTDEERFL 758
Query: 700 FRKLGLRMKAFLLLGK 715
R++GL+MKAFL+LG+
Sbjct: 759 LRRIGLKMKAFLMLGR 774
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ + E LR + + K+ + + V +H WK E+V++ ++G +K
Sbjct: 750 TVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKH 809
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG++I G A+ LYRG +Y+ P + + + R + A S+
Sbjct: 810 IAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIELQRR 869
Query: 369 KQIHKQIS 376
+ ++ IS
Sbjct: 870 EGLNHHIS 877
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 537
T+ +E L+R+ + LGR G M W+ + K+ +K G +
Sbjct: 750 TVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVK-GKSFPQVK 808
Query: 538 RMVEDIKKLTGGTLLSRNKDF----LVFYRGKNFLSPDVTEA---LQERERLAKSLQ 587
+ ++ +GG L+S +K ++ YRGKN+ +P + + L R+ LA+S++
Sbjct: 809 HIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIE 865
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/530 (46%), Positives = 331/530 (62%), Gaps = 38/530 (7%)
Query: 200 ARGGFSK------ESPLG----LGEEVGSD---GEVKFPWEK-RKEEVAEGRWLVKRRSS 245
AR +SK E P G G +V D ++ PWEK R E EG KR S
Sbjct: 260 ARAKYSKSPSYINEKPFGANGGYGVQVSYDDNSSSIELPWEKERVMESVEGYLRGKR--S 317
Query: 246 RTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGA 305
T LAE LPE EL+RLRN+ + + ++ AG+ Q +VD +HEKW+ E+V+LK E
Sbjct: 318 NTELAERMLPEHELKRLRNVALRMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEP 377
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
+ NM+R HEILE +TGGLVIWRSG++V LYRG+SY++ V + K++E ++
Sbjct: 378 LSFNMRRTHEILENRTGGLVIWRSGSSVVLYRGISYKLHCV---RSFSKQDEAGKEILAH 434
Query: 366 ATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
+ + +++ + D + + L+ S E+ TDF
Sbjct: 435 PEEVTSNATLNIGVKHFIGTTESYIPDRAKY------------LKDLSREELTDFT---- 478
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
E+ + LD LGPR+ DW G +PLPVDAD+L + PGY+PPFR+LPYGVR L KE T
Sbjct: 479 ---ELNQFLDELGPRFEDWCGREPLPVDADLLLAVDPGYKPPFRLLPYGVRHCLTDKEMT 535
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 545
+RLAR +PPHFALGR+RQLQGLA A++KLWE+S+I KIA+KRGVQ T +ERM E++K
Sbjct: 536 IFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRNERMAEELKV 595
Query: 546 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 605
LTGG LLSRNK+++VFYRG +FL P + + L+ER++L QDEEEQAR A A V S
Sbjct: 596 LTGGILLSRNKEYIVFYRGNDFLPPAIVKTLKERKKLTYLKQDEEEQARQMALASVESSA 655
Query: 606 ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 665
+T + AGTL ET+ A S W + + ++REA + + A LV+ LE KLA A+ K
Sbjct: 656 KTSKVPLVAGTLAETVAATSHWRDQRGSPDIDEMLREAVLAKRASLVKHLENKLALAKGK 715
Query: 666 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
L +AE+AL+KV E L P+ D E+I+DEERF+FRK+GL MK +L LGK
Sbjct: 716 LRKAEKALAKVHEHLDPSGLPTDLETISDEERFLFRKIGLSMKPYLFLGK 765
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 141/345 (40%), Gaps = 70/345 (20%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL +A+V + W+ S IV++ I+ G +RM E L+ TGG+++ R+ + YR
Sbjct: 558 GLAKAIVKL----WERSAIVKIAIKRGVQNTRNERMAEELKVLTGGILLSRNKEYIVFYR 613
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADK--------- 388
G + P+ + K + +R +L + + Q ++Q +Q++++ SA K
Sbjct: 614 GNDFLPPA--IVKTLKERKKL--TYLKQDEEEQA-RQMALASVESSAKTSKVPLVAGTLA 668
Query: 389 -TAQDPSNFDSYNNVHATQVNLETASEEQETDFVREV------------KYEDEVEKLLD 435
T S++ L A + V+ + K E + K+ +
Sbjct: 669 ETVAATSHWRDQRGSPDIDEMLREAVLAKRASLVKHLENKLALAKGKLRKAEKALAKVHE 728
Query: 436 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 495
L P LP D + T++ +E +++ +
Sbjct: 729 HLDP--------SGLPTDLE----------------------TISDEERFLFRKIGLSMK 758
Query: 496 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 555
P+ LG+ G M W+ + K+ + RG + + ++ +GG L+S
Sbjct: 759 PYLFLGKRGVYDGTIENMHLHWKYRELVKVIV-RGKSFAQVKHIAISLEAESGGVLVSIE 817
Query: 556 KDF----LVFYRGKNFLSPDVTEA---LQERERLAKSLQDEEEQA 593
+ ++ YRGKN+L P+V L +R+ L +S++ + +A
Sbjct: 818 RTTKGYAIIVYRGKNYLHPEVMRPKNLLTKRQALVRSIELQRREA 862
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ + E R + K + G+ ++ +H WK E+V++ + G +K
Sbjct: 741 TISDEERFLFRKIGLSMKPYLFLGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKH 800
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG+++ G A+ +YRG +Y P V K + + + S+
Sbjct: 801 IAISLEAESGGVLVSIERTTKGYAIIVYRGKNYLHPEVMRPKNLLTKRQALVRSIELQRR 860
Query: 369 KQIHKQIS 376
+ + IS
Sbjct: 861 EALKHHIS 868
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/541 (44%), Positives = 337/541 (62%), Gaps = 33/541 (6%)
Query: 181 IEKGSIEDIFYVEEGLLP--NARGGFSKESPLGLGEEVGSDGEVKFPWEK---RKEEVAE 235
I S ED ++ +LP R SK+ + + +G V PW++ R EV
Sbjct: 148 ISDDSSEDEAEIDTVVLPVTEKRSTLSKKIVHSVSSDNDDNGRVDLPWKREPRRDSEVDA 207
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G+ R S+T LAE LPE ELRRLRN++ + + + G+TQ ++D IHEKWK
Sbjct: 208 GQ-----RRSKTLLAEQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVD 262
Query: 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKR 355
E+V+LK EG +NMKR HE LE +TGGLVIWRSG+ + LYRG++Y +P VQ
Sbjct: 263 EVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGSLIVLYRGMTYHLPCVQ-------- 314
Query: 356 NELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPS-NFDSYNNVHATQVNLETASE 414
KQ N+L + + D + N + V + AS+
Sbjct: 315 --------------SYAKQNQAKSNTLDVPNNVESDDITRNEKLHTTVGTMSTIVSGASK 360
Query: 415 EQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYG 474
+T +E+ ++ LLD +GPR+ DW GC+P+PVDAD+LPGIVPGY+PP R+LPYG
Sbjct: 361 HTKTLSKKELMELSDLNHLLDEIGPRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYG 420
Query: 475 VRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLT 534
VR L KE T +RLAR +PPHFALGR+RQLQGLA AM+KLWEK +IAKIA+KRGV+ T
Sbjct: 421 VRHCLRNKEVTIFRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENT 480
Query: 535 TSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR 594
+ERM E+++ LTGGTLLSRNK+++VFYRG ++L P +TEAL+ER +LA QD EEQ R
Sbjct: 481 RNERMAEELRILTGGTLLSRNKEYIVFYRGNDYLPPTITEALKERRKLADRQQDVEEQVR 540
Query: 595 LRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQK 654
ASA + ++ AGTL ET+ A SRWG + EN+ ++ + + L++
Sbjct: 541 QVASAAIESKVKASNAPLVAGTLTETIAATSRWGSQPSGHDIENMREDSALAKLDSLIEY 600
Query: 655 LEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
L+KKLA A+ K+ AE+ ++K++E +P++ D E+ITDEER +FRK+GL MK +LLLG
Sbjct: 601 LKKKLALAKCKVKNAEKIIAKLQEKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLG 660
Query: 715 K 715
+
Sbjct: 661 R 661
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 52/336 (15%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A+V + W+ I ++ I+ G +RM E L TGG ++ R+ + YR
Sbjct: 454 GLANAMVKL----WEKCAIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEYIVFYR 509
Query: 338 GVSYEVPSV----QLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSA--------A 385
G Y P++ + +++ R + V Q I ++ S L A A
Sbjct: 510 GNDYLPPTITEALKERRKLADRQQDVEEQVRQVASAAIESKVKASNAPLVAGTLTETIAA 569
Query: 386 ADKTAQDPSNFDSYNNVHATQV-NLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDW 444
+ PS D N + + L++ E + EK++ L +
Sbjct: 570 TSRWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKCKVKNAEKIIAKLQEKKEP- 628
Query: 445 PGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSR 504
LP D + T+ +E +++ + P+ LGR
Sbjct: 629 ---SDLPTDLE----------------------TITDEERLLFRKIGLSMKPYLLLGRRG 663
Query: 505 QLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF----LV 560
G M W+ + KI + RG L + + ++ + G ++S +K ++
Sbjct: 664 VYDGTVENMHLHWKFRELVKIIV-RGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVI 722
Query: 561 FYRGKNFLSPDVT---EALQERERLAKSLQDEEEQA 593
YRGKN+ PD L R+ LA+S++ + +A
Sbjct: 723 VYRGKNYTRPDAMRPKNMLTRRQALARSIELQRREA 758
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/541 (44%), Positives = 337/541 (62%), Gaps = 33/541 (6%)
Query: 181 IEKGSIEDIFYVEEGLLP--NARGGFSKESPLGLGEEVGSDGEVKFPWEK---RKEEVAE 235
I S ED ++ +LP R SK+ + + +G V PW++ R EV
Sbjct: 205 ISDDSSEDEAEIDTVVLPVTEKRSTLSKKIVHSVSSDNDDNGRVDLPWKREPRRDSEVDA 264
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G+ R S+T LAE LPE ELRRLRN++ + + + G+TQ ++D IHEKWK
Sbjct: 265 GQ-----RRSKTLLAEQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVD 319
Query: 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKR 355
E+V+LK EG +NMKR HE LE +TGGLVIWRSG+ + LYRG++Y +P VQ
Sbjct: 320 EVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGSLIVLYRGMTYHLPCVQ-------- 371
Query: 356 NELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPS-NFDSYNNVHATQVNLETASE 414
KQ N+L + + D + N + V + AS+
Sbjct: 372 --------------SYAKQNQAKSNTLDVPNNVESDDITRNEKLHTTVGTMSTIVSGASK 417
Query: 415 EQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYG 474
+T +E+ ++ LLD +GPR+ DW GC+P+PVDAD+LPGIVPGY+PP R+LPYG
Sbjct: 418 HTKTLSKKELMELSDLNHLLDEIGPRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYG 477
Query: 475 VRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLT 534
VR L KE T +RLAR +PPHFALGR+RQLQGLA AM+KLWEK +IAKIA+KRGV+ T
Sbjct: 478 VRHCLRNKEVTIFRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENT 537
Query: 535 TSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR 594
+ERM E+++ LTGGTLLSRNK+++VFYRG ++L P +TEAL+ER +LA QD EEQ R
Sbjct: 538 RNERMAEELRILTGGTLLSRNKEYIVFYRGNDYLPPTITEALKERRKLADRQQDVEEQVR 597
Query: 595 LRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQK 654
ASA + ++ AGTL ET+ A SRWG + EN+ ++ + + L++
Sbjct: 598 QVASAAIESKVKASNAPLVAGTLTETIAATSRWGSQPSGHDIENMREDSALAKLDSLIEY 657
Query: 655 LEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
L+KKLA A+ K+ AE+ ++K++E +P++ D E+ITDEER +FRK+GL MK +LLLG
Sbjct: 658 LKKKLALAKCKVKNAEKIIAKLQEKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLG 717
Query: 715 K 715
+
Sbjct: 718 R 718
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 52/336 (15%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A+V + W+ I ++ I+ G +RM E L TGG ++ R+ + YR
Sbjct: 511 GLANAMVKL----WEKCAIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEYIVFYR 566
Query: 338 GVSYEVPSV----QLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSA--------A 385
G Y P++ + +++ R + V Q I ++ S L A A
Sbjct: 567 GNDYLPPTITEALKERRKLADRQQDVEEQVRQVASAAIESKVKASNAPLVAGTLTETIAA 626
Query: 386 ADKTAQDPSNFDSYNNVHATQV-NLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDW 444
+ PS D N + + L++ E + EK++ L +
Sbjct: 627 TSRWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKCKVKNAEKIIAKLQEKKEP- 685
Query: 445 PGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSR 504
LP D + T+ +E +++ + P+ LGR
Sbjct: 686 ---SDLPTDLE----------------------TITDEERLLFRKIGLSMKPYLLLGRRG 720
Query: 505 QLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF----LV 560
G M W+ + KI + RG L + + ++ + G ++S +K ++
Sbjct: 721 VYDGTVENMHLHWKFRELVKIIV-RGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVI 779
Query: 561 FYRGKNFLSPDVT---EALQERERLAKSLQDEEEQA 593
YRGKN+ PD L R+ LA+S++ + +A
Sbjct: 780 VYRGKNYTRPDAMRPKNMLTRRQALARSIELQRREA 815
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 228/518 (44%), Positives = 328/518 (63%), Gaps = 34/518 (6%)
Query: 198 PNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPES 257
PNA G S E V G V PWE+ ++ +G + + S T LAE T+PE
Sbjct: 306 PNATIGCSHEEDF-----VQKLGSVLLPWEREDDDAFDG--VRQGNRSNTELAEKTIPEP 358
Query: 258 ELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEIL 317
ELRRLR+ + K + RI G+TQA+V IH KW E+V+++ EG P+LNMKR HEIL
Sbjct: 359 ELRRLRDAALRMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSLNMKRTHEIL 418
Query: 318 ERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISM 377
E +TGG VIWRSG ++ LYRG++Y + VQ +I + + + K++ ++
Sbjct: 419 EDRTGGTVIWRSGRSIVLYRGMNYNLRCVQSYAKIAEVD----------SSKKVSDVSTV 468
Query: 378 SGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGL 437
+ + K++ D N S + V ++Q ET +++ LD L
Sbjct: 469 VPSCVEHNLQKSSADGVN-RSTSIVSSSQGATETF----------------DIDSFLDQL 511
Query: 438 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 497
GPRY DW G P+PVDAD+LPG+VP Y+PPFR LPY + +L KE T L+RLAR PH
Sbjct: 512 GPRYKDWSGRSPIPVDADLLPGVVPDYKPPFRQLPYRTKLSLRDKEMTALRRLARQTAPH 571
Query: 498 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557
FALGR+R+ QGLA A++KLWEKS+I KIA+KRGV T ++RM E+IKKLTGG L+SRNK+
Sbjct: 572 FALGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTCNDRMAEEIKKLTGGVLISRNKE 631
Query: 558 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTL 617
+++FYRG +F++P + + L E+++ A + QD+EE ARL+ASA + ++ AGTL
Sbjct: 632 YIIFYRGNDFMTPKIRQVLVEQQQQAITQQDQEELARLKASASITLIPNALKNPQVAGTL 691
Query: 618 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 677
ET +A SRWG ++D ++ + +H L++ + +KL A+ K+ +AE AL+KV+
Sbjct: 692 AETREAESRWGDLINDGRRKKERNHLILAKHTSLLKNMTRKLILAKTKVAKAEMALAKVQ 751
Query: 678 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
E L PAE D E++TDEERF+FR++GL+MKAFL+LG+
Sbjct: 752 EFLSPAELPTDLETVTDEERFLFRRIGLKMKAFLMLGR 789
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 230 KEEVAEGRWLVKRRSSRTSLAEL-----TLPESELRRLRNLTFQTKSKTRIKGAGLTQAV 284
K +VA+ + + S AEL T+ + E R + + K+ + +
Sbjct: 737 KTKVAKAEMALAKVQEFLSPAELPTDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGT 796
Query: 285 VDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVS 340
V +H WK E+V++ ++G +K + LE ++GG++I G ++ +YRG +
Sbjct: 797 VQNMHLHWKHRELVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKN 856
Query: 341 YEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISM 377
Y+ P + + + R A S+ + ++ IS+
Sbjct: 857 YKRPQILKPRNLLTRRRAMARSIELQRREALNHHISI 893
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/478 (45%), Positives = 311/478 (65%), Gaps = 28/478 (5%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
K+R S T LAE T+PE ELRRLR + + + + G+TQ +V +H+KW+ +E+V+
Sbjct: 188 KKRRSNTELAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKF 247
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRI--YKRNEL 358
K + +MK+ H+ILE K GG+VIWRSG+++ LYRG++Y++P ++ K++ K N +
Sbjct: 248 KFGIPLSAHMKKAHQILESKIGGIVIWRSGSSIVLYRGMAYKLPCIENYKKVNLAKENAV 307
Query: 359 PAS-SVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQE 417
S V +D Q S N A+ Q+ + + L+ SEE+
Sbjct: 308 DHSLHVGNGSDGQ------ASVNETVGTAESVIQESAEY------------LKDMSEEEL 349
Query: 418 TDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRS 477
+ ++ LLD LGPR+ DW G PLPVDAD+LP +VPGY+ PFR+LPY +R
Sbjct: 350 MEMC-------DLNHLLDELGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRP 402
Query: 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 537
L KE TN +RLAR PHFALGR+R+LQGLA AM+KLWE S+IAKIA+KRGV T ++
Sbjct: 403 CLTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCND 462
Query: 538 RMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA 597
RM E+++KLTGGTLLSRNK+++VFYRG +FL P VT L ER++L QDEE++AR A
Sbjct: 463 RMAEELRKLTGGTLLSRNKEYIVFYRGNDFLPPVVTNTLNERQKLTLLQQDEEDKARQIA 522
Query: 598 SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEK 657
S+ + + + + AGTL ET A + WG + EN++R++ + + + LV+ EK
Sbjct: 523 SSITVSNSKAAQVPLIAGTLTETRAATTNWGHQPSKQEIENMIRDSAMNKLSALVKHHEK 582
Query: 658 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KLA A+ K +AE+AL+KV+ L PA+ +D E++T+EERF+FRK+GL MK +LLLG+
Sbjct: 583 KLALAKSKFRKAEKALAKVQRDLDPADIPSDLETLTNEERFLFRKIGLSMKPYLLLGR 640
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 59/364 (16%)
Query: 249 LAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPA 307
LA T P L R R L GL +A+V + W+TS I ++ I+ G P
Sbjct: 415 LARTTAPHFALGRNRELQ------------GLARAMVKL----WETSAIAKIAIKRGVPN 458
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQAT 367
RM E L + TGG ++ R+ + YRG + +P V N NE ++ Q
Sbjct: 459 TCNDRMAEELRKLTGGTLLSRNKEYIVFYRGNDF-LPPVVTNTL----NERQKLTLLQQD 513
Query: 368 DKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQET-DFVRE--- 423
++ +QI+ +S++ + K AQ P + A N +QE + +R+
Sbjct: 514 EEDKARQIA---SSITVSNSKAAQVPLIAGTLTETRAATTNWGHQPSKQEIENMIRDSAM 570
Query: 424 ------VKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRS 477
VK+ EK L ++ V D+ P +P
Sbjct: 571 NKLSALVKHH---EKKLALAKSKFRKAEKALA-KVQRDLDPADIPSDL-----------E 615
Query: 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 537
TL +E +++ + P+ LGR G M W+ + K+ +K G +
Sbjct: 616 TLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELVKLIVK-GRNSAQVK 674
Query: 538 RMVEDIKKLTGGTLLSRNKDF-----LVFYRGKNFLSPDVTEA---LQERERLAKSLQDE 589
+ ++ +GG L+S +KD ++ YRGKN+ SP V L R+ LA+S++ +
Sbjct: 675 HISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVVRPKNLLTRRQALARSVELQ 734
Query: 590 EEQA 593
+A
Sbjct: 735 RREA 738
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 284 VVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI-----WRSGTAVSLYRG 338
++ +H WK E+V+L ++G + +K + LE ++GG+++ R + +YRG
Sbjct: 647 TIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVYRG 706
Query: 339 VSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
+Y P V K + R + A SV + + IS
Sbjct: 707 KNYFSPRVVRPKNLLTRRQALARSVELQRREALKHHIS 744
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/483 (46%), Positives = 308/483 (63%), Gaps = 43/483 (8%)
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G W + R S T AE +PE EL+RLRN+ + + ++ AG+TQA+V+ IHEKW+
Sbjct: 228 GIW--RTRKSNTVEAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVD 285
Query: 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKR 355
E+V+LK +LNMKR HE+LE+KTGGLVIWRSG++V LYRG+SY++ VQ K+
Sbjct: 286 EVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQT---FIKQ 342
Query: 356 NELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEE 415
N L A + +IH+ S A Q+ N+ + +E
Sbjct: 343 NNLEA-------NPEIHR---------SVEARDYVQEDGNYP------------KNVPKE 374
Query: 416 QETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGV 475
Q ++ E+ LLD +GPR+ DW GC P PVDAD+LPG V GY+ PFR+LP GV
Sbjct: 375 QLSELC-------ELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGV 427
Query: 476 RSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTT 535
+ L+ E T ++RLAR PPHFALGRSR+LQGLA AM+KLW KS+IAKIA+KRGV+ T
Sbjct: 428 KPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTR 487
Query: 536 SERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERER-LAKSLQDEEEQAR 594
+ERM E++K+LT G L+SRNK+++VFYRG +F+ P V EAL ER++ + + LQ +E+QAR
Sbjct: 488 NERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAR 547
Query: 595 LRAS--AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLV 652
AS A + ++ + AGTL ET+ A+SRW E L RE+ + A L+
Sbjct: 548 EMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALI 607
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+ LE +L ++KL RAER L+KV++ L P+E D E IT+EER ++RK+GL M FLL
Sbjct: 608 RDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLL 667
Query: 713 LGK 715
LG+
Sbjct: 668 LGR 670
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/581 (41%), Positives = 339/581 (58%), Gaps = 39/581 (6%)
Query: 143 STMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARG 202
+ + +I EKL+ GYV D DE R GS +IF LP R
Sbjct: 80 TAIQRIAEKLRSLGYV---------DGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRV 130
Query: 203 GFSKESPLGLGE----EVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESE 258
G + + L E E G+ G + E RKE E + + K +LAELTLPE E
Sbjct: 131 GHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEE 190
Query: 259 LRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILE 318
LRRL+ + Q + K ++ AG+T+ +V+ IHE+W+ +E+V+++ E LNMKR H+ILE
Sbjct: 191 LRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILE 250
Query: 319 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH-KQISM 377
RKTGGLVIWRSG+ + LYRG +Y+ P + + + ASS SQ +++ K++
Sbjct: 251 RKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCS 310
Query: 378 SGNS-LSAAADKTAQDPSNFDSYNNV-HATQVNLETASEEQETDFVREVKYEDEVEKLLD 435
SG + +A A + V + T+V + E Q E+E ++LLD
Sbjct: 311 SGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQ---------LEEEADRLLD 361
Query: 436 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 495
GLGPR+TDW G DPLP+DAD+LP +VPGY+ PFR+LPYG++ L E T L+RL R LP
Sbjct: 362 GLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLP 421
Query: 496 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 555
HFALGR+R+LQGLA +MIKLWEK IAKIA+KRGVQ T SE M E++K LTGGTLLSR+
Sbjct: 422 CHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRD 481
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE-EQARLRASAFVLPSIETIEKSGTA 614
++F+VFYRGK+FL P V+ A++ R + ++ + RL +A +
Sbjct: 482 REFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINA----------EESEL 531
Query: 615 GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 674
GT + D + DD +L + +R +V++ KL+ A K RAE+ L+
Sbjct: 532 GTSEHASDKDC---DGTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLA 588
Query: 675 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
++EE+ P + + D E IT+EER+M RK+GLRMK FLLLG+
Sbjct: 589 ELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGR 629
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 150/382 (39%), Gaps = 72/382 (18%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
+ E E LR + + K + G+ V+ +H WK E+V++ G ++ +
Sbjct: 606 ITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGV 665
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS-----VQLNKR-IYKR-------- 355
LE ++GG+++ G A+ +YRG +Y+ P+ LNKR KR
Sbjct: 666 ARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRE 725
Query: 356 -------------NELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 402
+EL VS+ DK+ + + + + L A ++ D S + +
Sbjct: 726 SLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGM 785
Query: 403 HATQVNLETASEEQETDF-------VREVKYEDEVEKLLDGLGPR-YTDW---------- 444
+++ +L+T+ ++ DF E E E +L + TD
Sbjct: 786 DSSRDSLQTSHNDKRIDFPSMCDSDTDEANPEPSSESVLKEIETNVLTDMNEEGECTTCS 845
Query: 445 --------PGCDPLPVDADMLPGIVPG----YQPPFRVLPYGVRSTLARKEATNLQRLAR 492
C + + + V ++PP + P RS A L R
Sbjct: 846 EDLVSQGETSCYAIVNHEETMESSVKSSKNEFKPPVQ-RPVDTRSNEMPFRAAPLSNRER 904
Query: 493 VLPPHFAL----------GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 542
+L AL GRS + G+A + ++K +A + +K + T+ + ++
Sbjct: 905 LLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVIFK 964
Query: 543 IKKLTGGTLLSRNKDFLVFYRG 564
+++ TG L+S+ ++ YRG
Sbjct: 965 LEQATGAVLVSQEPSKVILYRG 986
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/581 (41%), Positives = 339/581 (58%), Gaps = 39/581 (6%)
Query: 143 STMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARG 202
+ + +I EKL+ GYV D DE R GS +IF LP R
Sbjct: 80 TAIQRIAEKLRSLGYV---------DGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRV 130
Query: 203 GFSKESPLGLGE----EVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESE 258
G + + L E E G+ G + E RKE E + + K +LAELTLPE E
Sbjct: 131 GHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEE 190
Query: 259 LRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILE 318
LRRL+ + Q + K ++ AG+T+ +V+ IHE+W+ +E+V+++ E LNMKR H+ILE
Sbjct: 191 LRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILE 250
Query: 319 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH-KQISM 377
RKTGGLVIWRSG+ + LYRG +Y+ P + + + ASS SQ +++ K++
Sbjct: 251 RKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCS 310
Query: 378 SGN-SLSAAADKTAQDPSNFDSYNNV-HATQVNLETASEEQETDFVREVKYEDEVEKLLD 435
SG + +A A + V + T+V + E Q E+E ++LLD
Sbjct: 311 SGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQ---------LEEEADRLLD 361
Query: 436 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 495
GLGPR+TDW G DPLP+DAD+LP +VPGY+ PFR+LPYG++ L E T L+RL R LP
Sbjct: 362 GLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLP 421
Query: 496 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 555
HFALGR+R+LQGLA +MIKLWEK IAKIA+KRGVQ T SE M E++K LTGGTLLSR+
Sbjct: 422 CHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRD 481
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE-EQARLRASAFVLPSIETIEKSGTA 614
++F+VFYRGK+FL P V+ A++ R + ++ + RL +A +
Sbjct: 482 REFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINA----------EESEL 531
Query: 615 GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 674
GT + D + DD +L + +R +V++ KL+ A K RAE+ L+
Sbjct: 532 GTSEHASDKDC---DGTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLA 588
Query: 675 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
++EE+ P + + D E IT+EER+M RK+GLRMK FLLLG+
Sbjct: 589 ELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGR 629
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 150/382 (39%), Gaps = 72/382 (18%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
+ E E LR + + K + G+ V+ +H WK E+V++ G ++ +
Sbjct: 606 ITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGV 665
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS-----VQLNKR-IYKR-------- 355
LE ++GG+++ G A+ +YRG +Y+ P+ LNKR KR
Sbjct: 666 ARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRE 725
Query: 356 -------------NELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 402
+EL VS+ DK+ + + + + L A ++ D S + +
Sbjct: 726 SLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGM 785
Query: 403 HATQVNLETASEEQETDF-------VREVKYEDEVEKLLDGLGPR-YTDW---------- 444
+++ +L+T+ ++ DF E E E +L + TD
Sbjct: 786 DSSRDSLQTSHNDKRIDFPSMCDSDTDEANPEPSSESVLKEIETNVLTDMNEEGECTTCS 845
Query: 445 --------PGCDPLPVDADMLPGIVPG----YQPPFRVLPYGVRSTLARKEATNLQRLAR 492
C + + + V ++PP + P RS A L R
Sbjct: 846 EDLVSQGETSCYAIVNHEETMESSVKSSKNEFKPPVQ-RPVDTRSNEMPFRAAPLSNRER 904
Query: 493 VLPPHFAL----------GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 542
+L AL GRS + G+A + ++K +A + +K + T+ + ++
Sbjct: 905 LLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVIFK 964
Query: 543 IKKLTGGTLLSRNKDFLVFYRG 564
+++ TG L+S+ ++ YRG
Sbjct: 965 LEQATGAVLVSQEPSKVILYRG 986
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 271/697 (38%), Positives = 377/697 (54%), Gaps = 75/697 (10%)
Query: 27 HGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLC 86
H + HF + L + F +++S + +N K + ++ S+ + N N
Sbjct: 16 HSSSLHFLFPKTPLSLL-KPFSSLRTTDSNNLRNRKTKRSLYPWDHQNSRKSSNTNPN-S 73
Query: 87 SSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDS---DGNGVGGVDDGGS 143
S+ SW+ KW PN S+ +D + G T+S DG G S
Sbjct: 74 STKSWINKWPSPN---------PSIESEHKGID--SKGRDGTESRYFDGRS------GTS 116
Query: 144 TMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGG 203
+ +IV +L+ G G +DE + +G+ +E G + E+ R
Sbjct: 117 AIERIVLRLRNLGL---------GSDDEDKNEGE---VESGDTMPVTGDEKLGDLLQRDW 164
Query: 204 FSKESPLGLGEEVGSDGEVKFPWEKRKEEVA---EGRWLVKRRSSRT-SLAELTLPESEL 259
+S L E+ + ++ PWE+ +E +GR +KRR+ R +LAELT+ + EL
Sbjct: 165 VRPDSMLIEDED---EDDMILPWERGEERQEEEGDGR--LKRRAVRAPTLAELTIEDEEL 219
Query: 260 RRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILER 319
RRLR L + + + AG+TQAV+ IHEKW+ E+VRLK A A +MK HEI+ER
Sbjct: 220 RRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVER 279
Query: 320 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 379
+TGGLV WRSG+ + ++RG +YE P Q D + G
Sbjct: 280 RTGGLVTWRSGSVMVVFRGTNYEGPPK-----------------PQPVDGE--------G 314
Query: 380 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVE--KLLDGL 437
+SL + +P+ + NN T LE S E E+E E LLDGL
Sbjct: 315 DSLFVPDVSSVDNPA-MRNDNNGGPT---LEKGSLPVRNPVHAENMTEEEAEYNSLLDGL 370
Query: 438 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 497
GPR+ DW G LPVD D+LP +PGY+ P R+LP G+R L E TNL++LA+ LP H
Sbjct: 371 GPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCH 430
Query: 498 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557
FALGR+R QGLA A+IKLWEKS + KIA+K G+Q T ++ M E+IK LTGG LL RNK
Sbjct: 431 FALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKY 490
Query: 558 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTL 617
++V YRGK+FL V AL ERE L K +Q EE+ R A +PS E AGTL
Sbjct: 491 YIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRT-GGAEAIPSGEDGVGQPLAGTL 549
Query: 618 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 677
E +A +RWG+ + E ++ EA + A +V+++E KLA A+ K LRAER L+K+E
Sbjct: 550 AEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRAERLLAKIE 609
Query: 678 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
S+ PA D E+ITDEERFMFR+LGLRMKA+LLLG
Sbjct: 610 ASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLG 646
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 270/697 (38%), Positives = 375/697 (53%), Gaps = 75/697 (10%)
Query: 27 HGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLC 86
H + HF + L F +++S + +N K + ++ S+ + N N
Sbjct: 16 HSSSLHFLFPKTPLSLLKPFSSLR-TTDSNNLRNRKTKRSLYPWDHQNSRKSSNTNPN-S 73
Query: 87 SSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDS---DGNGVGGVDDGGS 143
S+ SW+ KW PN S+ +D + G T+S DG G S
Sbjct: 74 STKSWINKWPSPN---------PSIESEHKGID--SKGRDGTESRYFDGRS------GTS 116
Query: 144 TMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGG 203
+ +IV +L+ G G +DE + +G+ +E G + E+ R
Sbjct: 117 AIERIVLRLRNLGL---------GSDDEDKNEGE---VESGDTMPVTGDEKLGDLLQRDW 164
Query: 204 FSKESPLGLGEEVGSDGEVKFPWEKRKEEVA---EGRWLVKRRSSRT-SLAELTLPESEL 259
+S L E+ + ++ PWE+ +E +GR +KRR+ R +LAELT+ + EL
Sbjct: 165 VRPDSMLIEDED---EDDMILPWERGEERQEEEGDGR--LKRRAVRAPTLAELTIEDEEL 219
Query: 260 RRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILER 319
RRLR L + + + AG+TQAV+ IHEKW+ E+VRLK A A +MK HEI+ER
Sbjct: 220 RRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVER 279
Query: 320 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 379
+TGGLV WRSG+ + ++RG +YE P Q D + G
Sbjct: 280 RTGGLVTWRSGSVMVVFRGTNYEGPPK-----------------PQPVDGE--------G 314
Query: 380 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVE--KLLDGL 437
+SL + +P+ + NN T LE S E E+E E LLDGL
Sbjct: 315 DSLFVPDVSSVDNPA-MRNDNNGGPT---LEKGSLPVRNPVHAENMTEEEAEYNSLLDGL 370
Query: 438 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 497
GPR+ DW G LPVD D+LP +PGY+ P R+LP G+R L E TNL++LA+ LP H
Sbjct: 371 GPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCH 430
Query: 498 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557
FALGR+R QGLA A+IKLWEKS + KIA+K G+Q T ++ M E+IK LTGG LL RNK
Sbjct: 431 FALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKY 490
Query: 558 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTL 617
++V YRGK+FL V AL ERE L K +Q EE+ R A +PS E AGTL
Sbjct: 491 YIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRT-GGAEAIPSGEDGVGQPLAGTL 549
Query: 618 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 677
E +A +RWG+ + E ++ EA + A +V+++E KLA A+ K LR ER L+K+E
Sbjct: 550 AEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRPERLLAKIE 609
Query: 678 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
S+ PA D E+ITDEERFMFR+LGLRMKA+LLLG
Sbjct: 610 ASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLG 646
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/501 (43%), Positives = 303/501 (60%), Gaps = 36/501 (7%)
Query: 222 VKFPWEKRKEE------VAEGRWLV--KRRSSRTSLAELTLPESELRRLRNLTFQTKSKT 273
V PWEK +EE V EG V KRR+ SLAELT+ +SELRRLR + +
Sbjct: 203 VLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAELTVEDSELRRLRRDGMYLRVRI 262
Query: 274 RIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAV 333
I AGLTQAV++ I++ W+ E+VRLK A +MK HEI+ER+TGG+VIWR+G+ +
Sbjct: 263 NIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVM 322
Query: 334 SLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDP 393
+YRG+ Y+ P V N+ + L VS A D+ + + + S A +DP
Sbjct: 323 VVYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQS-------APLVIKDP 375
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVD 453
+ + E +EE E E LLD LGPR+ +W G LPVD
Sbjct: 376 --------IIKNPIRKENMTEE-----------EVEFNSLLDSLGPRFQEWWGTGVLPVD 416
Query: 454 ADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAM 513
AD+LP +PGY+ PFR+LP G+RS L E TNL+++ + LP HFALGR+R QGLA A+
Sbjct: 417 ADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAI 476
Query: 514 IKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVT 573
+++WEKS IAKIA+KRG+Q T ++ M +++K LTGG LL RNK ++V YRGK+FL V
Sbjct: 477 LQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSVA 536
Query: 574 EALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDD 633
L ER+ L K +QD EE+ R R V P + + AGTL E +A +RWGK +
Sbjct: 537 ATLAERQELTKEIQDVEERVRNREIEAVQPVGDKV--PAEAGTLAEFYEAQARWGKEITP 594
Query: 634 SHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESIT 693
H+E ++ EA +A +V++++ KL A+ K RAE+ LSK+E S+ P D E I+
Sbjct: 595 DHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVIS 654
Query: 694 DEERFMFRKLGLRMKAFLLLG 714
+EER MFRK+GL+MKA+L +G
Sbjct: 655 EEERAMFRKVGLKMKAYLPIG 675
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/501 (43%), Positives = 301/501 (60%), Gaps = 36/501 (7%)
Query: 222 VKFPWEKRKEEVAEGRW--------LVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKT 273
V PWEK +EE A R + K R+ SLAELT+ +SELRRLR + +
Sbjct: 203 VLLPWEKNEEEQAAERVEGEGGVAVMKKGRARAPSLAELTVEDSELRRLRRDGMYLRVRI 262
Query: 274 RIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAV 333
I AGLTQAV++ I++ W+ E+VRLK A +MK HEI+ER+TGG+VIWR+G+ +
Sbjct: 263 NIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVM 322
Query: 334 SLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDP 393
+YRG+ Y+ P V N+ + L VS A D+ + + + S S +DP
Sbjct: 323 VVYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQSPPS-------EIKDP 375
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVD 453
+ + E +EE E E LLD LGPR+ +W G LPVD
Sbjct: 376 --------IIKNPIRKENMTEE-----------EAEFNSLLDSLGPRFQEWWGTGVLPVD 416
Query: 454 ADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAM 513
AD+LP +PGY+ PFR+LP G+RS L E TNL+++ + LP HFALGR+R QGLA A+
Sbjct: 417 ADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAI 476
Query: 514 IKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVT 573
+++WEKS IAKIA+KRG+Q T ++ M +++K LTGG LL RNK ++V YRGK+FL V
Sbjct: 477 LQIWEKSLIAKIAVKRGIQNTNNKLMADEVKALTGGVLLLRNKYYIVIYRGKDFLPSSVA 536
Query: 574 EALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDD 633
L ER+ L K +QD EE+ R R V P + + AGTL E +A +RWGK +
Sbjct: 537 ATLAERQELTKEIQDVEERVRNREIEAVQPVGDKV--PAEAGTLAEFYEAQARWGKEITP 594
Query: 634 SHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESIT 693
H+E ++ EA +A +V++++ KL A+ K RAE+ LSK+E S+ P D E I+
Sbjct: 595 DHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVIS 654
Query: 694 DEERFMFRKLGLRMKAFLLLG 714
+EER MFRK+GL+MKA+L LG
Sbjct: 655 EEERAMFRKVGLKMKAYLPLG 675
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 248/641 (38%), Positives = 358/641 (55%), Gaps = 85/641 (13%)
Query: 90 SWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIV 149
+W+ KW KP++ + +K P + V+ K + F+ D G + + +IV
Sbjct: 62 NWISKW-KPSQNHSIKNPPSEVSQEKPHY------FSN-----------DKGQNAIERIV 103
Query: 150 EKLKKFGYVGDGDGDGDGDNDERRG-QGKERVIEKGSIEDIFYVEEGLLPNARGGFSKES 208
+L+ G G D DE G +G E I G + EE L + + +
Sbjct: 104 LRLRNLGL-------GSDDEDELEGLEGSE--INGGGLTG----EERLGDLLKREWVRPD 150
Query: 209 PLGLGEEVGSDG-EVKFPWEKRKEEVAE-------GRWLVKRRSSRTSLAELTLPESELR 260
+ + GSD E PWE+ + E GR KRR +LAELT+ + ELR
Sbjct: 151 TVVFSNDEGSDSDESVLPWEREERGAVEMEGGIESGR---KRRGKAPTLAELTIEDEELR 207
Query: 261 RLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERK 320
RLR + + + I AG+T AV++ IH++W+ E+VRLK A +MK HEI+ER+
Sbjct: 208 RLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERR 267
Query: 321 TGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGN 380
TGGLVIWR+G+ + ++RG +Y+ P +L Q D++ G+
Sbjct: 268 TGGLVIWRAGSVMVVFRGTNYQGPPSKL----------------QPADRE--------GD 303
Query: 381 SLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVR-------EVKYEDEVEKL 433
+L D S+ DS V N+ T+S E+ +R + E E+ L
Sbjct: 304 ALFVP------DVSSTDS---VMTRSSNIATSSSEKSKLVMRITEPTENMTEEEAELNSL 354
Query: 434 LDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARV 493
LD LGPR+ +W G LPVDAD+LP VP Y+ PFR+LP G+R+ L E TN+++LA+
Sbjct: 355 LDDLGPRFEEWWGTGLLPVDADLLPPKVPCYKTPFRLLPVGMRARLTNAEMTNMRKLAKA 414
Query: 494 LPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS 553
LP HFALGR+R QGLAVA++KLWEKS +AKIA+KRG+Q T ++ M +++K LTGG LL
Sbjct: 415 LPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMADELKMLTGGVLLL 474
Query: 554 RNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGT 613
RNK ++V +RGK+FL V AL ER+ + K +QD EE+ R S PS E E
Sbjct: 475 RNKYYIVIFRGKDFLPQSVAAALAERQEVTKQIQDVEERVR-SNSVEAAPSGED-EGKAL 532
Query: 614 AGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERAL 673
AGTL E +A +RWG+ + +E ++ EA + A LV++ E KLA A+ K LRAE L
Sbjct: 533 AGTLAEFYEAQARWGRDISTEEREKMIEEASKAKTARLVKRTEHKLAIAQAKKLRAESLL 592
Query: 674 SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
SK+E ++ P+ D E+I++EER MFR++GLRMKA+L LG
Sbjct: 593 SKIETTMVPSGPDFDQETISEEERVMFRRVGLRMKAYLPLG 633
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 225/509 (44%), Positives = 303/509 (59%), Gaps = 52/509 (10%)
Query: 221 EVKFPWEKRKEEVAEGRWL----VKRRSSRT-SLAELTLPESELRRLRNLTFQTKSKTRI 275
E PWE+ +EVA GR VKRR R SLAELT+ + ELRRLR L + + +
Sbjct: 149 ESVLPWER--DEVARGRENEEDGVKRRRVRAPSLAELTIEDEELRRLRRLGMTLRDRITV 206
Query: 276 KGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSL 335
AG+TQAV + IH+ W+ SE+VRLK A +MK HE++ER+TGGL+IWRSG+ + +
Sbjct: 207 PKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVV 266
Query: 336 YRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSA-AADKT----- 389
YRG +Y+ P K ++ GNS + AD T
Sbjct: 267 YRGSNYKRPL---------------------------KSETLDGNSSAVKGADGTLFIPD 299
Query: 390 AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
A P+ DS TQ + Q T+ + E E E ++LD LGPR+ DW G
Sbjct: 300 ASSPTEHDSQGKDVNTQREIAARLNMQNTEDMTE--EELEFNQMLDELGPRFVDWWGTGI 357
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP +PGY+ PFR+LP G+R TL E TNL++LAR LP HFALGR+R QGL
Sbjct: 358 LPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQGL 417
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS + KIA+KRG+Q T ++ M E+IK LTGGTLL RNK ++V YRGK+FL
Sbjct: 418 AAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVIYRGKDFLP 477
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS----GTAGTLKETLDANS 625
V AL ERE L K +Q+ EEQ R +P + +++ S AGTL E +A +
Sbjct: 478 TSVAAALAEREELTKDIQNVEEQKR------CIPVVHSMDDSLDGHALAGTLAEFQEAQA 531
Query: 626 RWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAER 685
RWG+ + +E + + L ++LE KL+ A+ K+ RAER LSK+E S+ A
Sbjct: 532 RWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVLANP 591
Query: 686 QADPESITDEERFMFRKLGLRMKAFLLLG 714
D E ITDEER +FR++GLR+KA+L +G
Sbjct: 592 SDDKEMITDEERSVFRRIGLRLKAYLPVG 620
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 225/509 (44%), Positives = 303/509 (59%), Gaps = 52/509 (10%)
Query: 221 EVKFPWEKRKEEVAEGRWL----VKRRSSRT-SLAELTLPESELRRLRNLTFQTKSKTRI 275
E PWE+ +EVA GR VKRR R SLAELT+ + ELRRLR L + + +
Sbjct: 152 ESVLPWER--DEVARGRENEEDGVKRRRVRAPSLAELTIEDEELRRLRRLGMTLRDRITV 209
Query: 276 KGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSL 335
AG+TQAV + IH+ W+ SE+VRLK A +MK HE++ER+TGGL+IWRSG+ + +
Sbjct: 210 PKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVV 269
Query: 336 YRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSA-AADKT----- 389
YRG +Y+ P K ++ GNS + AD T
Sbjct: 270 YRGSNYKRPL---------------------------KSETLDGNSSAVKGADGTLFIPD 302
Query: 390 AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
A P+ DS TQ + Q T+ + E E E ++LD LGPR+ DW G
Sbjct: 303 ASSPTEHDSQGKDVNTQREIAARLNMQNTEDMTE--EELEFNQMLDELGPRFVDWWGTGI 360
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP +PGY+ PFR+LP G+R TL E TNL++LAR LP HFALGR+R QGL
Sbjct: 361 LPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQGL 420
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS + KIA+KRG+Q T ++ M E+IK LTGGTLL RNK ++V YRGK+FL
Sbjct: 421 AAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVIYRGKDFLP 480
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS----GTAGTLKETLDANS 625
V AL ERE L K +Q+ EEQ R +P + +++ S AGTL E +A +
Sbjct: 481 TSVAAALAEREELTKDIQNVEEQKR------CIPVVHSMDDSLDGHALAGTLAEFQEAQA 534
Query: 626 RWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAER 685
RWG+ + +E + + L ++LE KL+ A+ K+ RAER LSK+E S+ A
Sbjct: 535 RWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVLANP 594
Query: 686 QADPESITDEERFMFRKLGLRMKAFLLLG 714
D E ITDEER +FR++GLR+KA+L +G
Sbjct: 595 SDDKEMITDEERSVFRRIGLRLKAYLPVG 623
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/476 (44%), Positives = 286/476 (60%), Gaps = 33/476 (6%)
Query: 239 LVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIV 298
L KRR SLA+LTL + LRRLR + + + + AGLTQ V++ IH++W+ E+V
Sbjct: 169 LKKRRVRAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELV 228
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNEL 358
RLK A +M++ HEI+ER+TGGLV WRSG+ + +YRG+ Y+ P Q K +
Sbjct: 229 RLKFHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSQKEVNEKKGDGF 288
Query: 359 PASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQET 418
VS+ D + S + S + + P N
Sbjct: 289 FVPDVSKRED----SSTATSTSEKSEVVVREREHPENMS--------------------- 323
Query: 419 DFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRST 478
+ E E LLDGLGPR+ W G LPVDAD+LP VPGY+ PFR+LP G+RS
Sbjct: 324 ------EAEAEYNALLDGLGPRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSR 377
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
L E TNL++LA+ LP HFALGR+R QGLA A++KLWEKS +AKIA+KRG+Q T +E
Sbjct: 378 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNEL 437
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS 598
M E++K LTGGTLL RNK F+V YRGK+F+ V L ERE L K +QD E++ R RA
Sbjct: 438 MAEELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVAAVLAEREELTKQVQDVEDKVRCRAV 497
Query: 599 AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKK 658
+ + E + AGTL E +A +RWG+ + +E +V EA + A LV+++E K
Sbjct: 498 DAI--PLGQGEATAQAGTLAEFYEAQARWGREISPEEREKMVEEAAKTKTAKLVRQIEHK 555
Query: 659 LARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
+ A+ K LRAE+ L+K+E S+ PA D E+ITDEER MFRK+GLRMK +L LG
Sbjct: 556 IFIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLG 611
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 368 bits (944), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 209/476 (43%), Positives = 288/476 (60%), Gaps = 34/476 (7%)
Query: 239 LVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIV 298
L KRR SLA+LTL + LRRLR + + + + AGLT+ V++ IH++W+ E+V
Sbjct: 170 LKKRRVRAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELV 229
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNEL 358
RLK A +M++ HEI+ER+TGGLV WRSG+ + +YRG+ Y+ P + K +
Sbjct: 230 RLKFHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSRKELNEKKGDGF 289
Query: 359 PASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQET 418
VS+ D + S + S + + P N
Sbjct: 290 FVPDVSKRED-----STATSTSEKSEVVVREREHPENMS--------------------- 323
Query: 419 DFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRST 478
+ E E LLDGLGPR+ W G LPVDAD+LP VPGY+ PFR+LP G+RS
Sbjct: 324 ------EAEAEYNALLDGLGPRFFGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSR 377
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
L E TNL++LA+ LP HFA+GR+R QGLA A++KLWEKS ++KIA+KRG+Q T +E
Sbjct: 378 LTNAEMTNLRKLAKSLPCHFAVGRNRNHQGLACAILKLWEKSLVSKIAVKRGIQNTNNEL 437
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS 598
M E++K LTGGTLL RNK F+V YRGK+F+ V L ERE L K +QD E++ R RA
Sbjct: 438 MAEELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVAAVLAEREELTKQVQDVEDKVRCRA- 496
Query: 599 AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKK 658
+PS + E + AGTL E +A +RWG+ + +E ++ EA + A LV+++E K
Sbjct: 497 VDAIPSGQG-EATAQAGTLAEFYEAQARWGREISPDEREKMMEEAAKAKTAKLVRQIEHK 555
Query: 659 LARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
+ A+ K LRAE+ L+K+E S+ PA D E+ITDEER MFRK+GLRMK +L LG
Sbjct: 556 IFIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLG 611
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 134/318 (42%), Gaps = 67/318 (21%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S + ++ ++ G N + M E L+ TGG ++ R+ + +YR
Sbjct: 407 GLACAILKL----WEKSLVSKIAVKRGIQNTNNELMAEELKMLTGGTLLLRNKYFIVIYR 462
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
G + VP+ + + +R EL V DK + + S + TAQ + +
Sbjct: 463 GKDF-VPT-SVAAVLAEREEL-TKQVQDVEDKVRCRAVDAIP---SGQGEATAQAGTLAE 516
Query: 398 SYN---------NVHATQVNLETASEEQETDFVREVKYEDEV--------EKLLDGLGPR 440
Y + + +E A++ + VR+++++ + EKLL
Sbjct: 517 FYEAQARWGREISPDEREKMMEEAAKAKTAKLVRQIEHKIFIAQTKKLRAEKLLAK---- 572
Query: 441 YTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFAL 500
++A M+P P Y + T+ +E +++ + P+ L
Sbjct: 573 -----------IEASMVPA-GPDYD----------QETITDEERVMFRKVGLRMKPYLPL 610
Query: 501 GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKL----TGGTLLS--- 553
G G+ M W+ + K+ K Q T + VED +L +GG L++
Sbjct: 611 GIRGVFDGVVENMHLHWKHRELVKLMTK---QKTLA--FVEDTARLLEYESGGILVAIEK 665
Query: 554 RNKDF-LVFYRGKNFLSP 570
+K+F L++YRGKN+ P
Sbjct: 666 VSKEFALIYYRGKNYKRP 683
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 215/498 (43%), Positives = 307/498 (61%), Gaps = 40/498 (8%)
Query: 225 PWEKR-KEEV--AEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLT 281
PW+K EEV EG+ K+R S+AELT+P+ EL+RLR L Q + + +I G+T
Sbjct: 1 PWDKNTHEEVNEEEGQVAKKQRVRSPSMAELTIPDFELKRLRTLGLQLQGRLKIGRLGVT 60
Query: 282 QAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
+V+ IHE+W+T EI ++K + ++NMK+ HE LER TGGLVIWRSG+A +YRG Y
Sbjct: 61 PGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGSAAVVYRGKDY 120
Query: 342 EVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNN 401
PSV+ + +R S++ D++ +QI DS +
Sbjct: 121 VHPSVREREEREERERRKLLSLNLDEDEEREEQI---------------------DSTST 159
Query: 402 VHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIV 461
V V E ++QE D VE++LDGLGPRY DW G P+PVD D+L
Sbjct: 160 V---SVEREAYLKKQENDL-------RMVEEILDGLGPRYADWTGRRPVPVDGDLLLSSD 209
Query: 462 PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 521
++ PFR+LPYGV+ L E T L+ LAR +PPH LG++R L G+A A++KLWE+S
Sbjct: 210 FEFKRPFRLLPYGVKPKLNNFELTELRHLARPIPPHIVLGKNRGLDGVAAAIVKLWERSE 269
Query: 522 IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERER 581
I KI +KRGVQ T++ERM E++K+LTGGTLLSR+K+F+VF+RGK+FL P V AL+ER++
Sbjct: 270 IVKIGVKRGVQNTSNERMAEELKRLTGGTLLSRDKEFIVFHRGKDFLPPAVQAALEERDQ 329
Query: 582 LAKSLQDEEEQARLRASAFVLPSIETIEKSGT--AGTLKETLDANSRWGKRL--DDSHKE 637
+AK+LQ+EEE+ R+ + + +E G GTL+E L+ ++W L D++ KE
Sbjct: 330 MAKALQEEEERFRMGGRSRPVQVVEETRYQGVYKVGTLEEALETRAKWEAWLDSDEARKE 389
Query: 638 NLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEER 697
+ A R+ A ++ KL A +K+ RA+ L+KVE PA D E ++D ER
Sbjct: 390 RIA--ARKRKRAQATDRIRSKLNLALKKMERAQLELNKVEAKTTPANVTLDKEHLSDGER 447
Query: 698 FMFRKLGLRMKAFLLLGK 715
+M+RKLGL+MKAFLLLG+
Sbjct: 448 YMYRKLGLKMKAFLLLGR 465
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 245 SRTSLAELTLPESELR-----RLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVR 299
++T+ A +TL + L R L + K+ + G+ V+ +H WK E+V+
Sbjct: 428 AKTTPANVTLDKEHLSDGERYMYRKLGLKMKAFLLLGRRGVFSGTVENMHLHWKYRELVK 487
Query: 300 LKIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+ ++ + +R+ +ILE ++GG+++ G A+ +YRG +Y+ PS
Sbjct: 488 ILVKTSLP-EAERIAKILENESGGILVDIITTSKGQAIVMYRGKNYQRPS 536
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 208/467 (44%), Positives = 288/467 (61%), Gaps = 28/467 (5%)
Query: 248 SLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPA 307
+LAELT+ + ELRRLR + + + + AGLT+ VV+ IH+KW+ +E+VRLK A
Sbjct: 204 TLAELTIEDEELRRLRRMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLA 263
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQAT 367
+MK HEI ER+TGGLVIWR+G+ + +YRG SYE P + + + L VS A
Sbjct: 264 HDMKTAHEITERRTGGLVIWRAGSVMVVYRGSSYEGPPSKTQPVNREGDALFIPDVSSAG 323
Query: 368 DKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYE 427
+ +M G++++ +A A + L + D E E
Sbjct: 324 SE------TMKGDNVAPSA-----------------AEKRELAMRRLDHSKDMTEE---E 357
Query: 428 DEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNL 487
E + LD LGPR+ +W G LPVDAD+LP +P Y+ PFR+LP G+RS L E TNL
Sbjct: 358 IEYDSFLDSLGPRFEEWWGTGILPVDADLLPPKIPDYKTPFRLLPTGMRSRLTNAEMTNL 417
Query: 488 QRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLT 547
++LA+ LP HFALGR+R QGLA ++K+WEKS +AKIA+KRG+Q T ++ M +++K LT
Sbjct: 418 RKLAKKLPCHFALGRNRNHQGLASTILKVWEKSLVAKIAVKRGIQNTNNKLMADELKMLT 477
Query: 548 GGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIET 607
GG LL RNK ++V YRGK+FL V AL ER+ L K +QD EE+ R R V PS E
Sbjct: 478 GGVLLLRNKYYIVIYRGKDFLPTSVAAALTERQELTKKIQDVEEKVRSREIEAV-PSKEE 536
Query: 608 IEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLL 667
E AGTL E +A SRWGK +E ++ + + A +V+++E KLA A+ K L
Sbjct: 537 -EGKPLAGTLAEFYEAQSRWGKDTSAEDREKMIEDDTRAKRARIVKRIEHKLAVAQAKKL 595
Query: 668 RAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
RAER L+K+E S+ P+ D E+ITDEER +FR++GLRMKA+L LG
Sbjct: 596 RAERLLAKIEVSMLPSGPDYDQETITDEERAVFRRIGLRMKAYLPLG 642
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 227/593 (38%), Positives = 329/593 (55%), Gaps = 68/593 (11%)
Query: 143 STMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARG 202
S + +I EKL+ G+V + D+ RR G+E K S +IF LP R
Sbjct: 58 SAIQRIAEKLRSLGFVEEKH-----DSPTRRITGEES--GKNSPGEIFVPLPKQLPIHRV 110
Query: 203 GFSKES-------PL---GLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAEL 252
G + ++ P+ G G + E+K W+K E K+ SLAEL
Sbjct: 111 GHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMER------KKEEKVPSLAEL 164
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
TLP +ELRRLR + + K +I AG+T+ +V+ IHE+W+T+E+V++ E +NMKR
Sbjct: 165 TLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKR 224
Query: 313 MHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH 372
H++LE KTGGLVIWRSG+ + LYRGV+Y+ P ++ + ASS+ Q
Sbjct: 225 THDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSRE 284
Query: 373 KQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 432
KQ S++ +S + +K + P + + L EV+ +E ++
Sbjct: 285 KQ-SIAESSAPSITNKMVK-PMLTQGVGSPDKVRFQLPG-----------EVQLVEEADR 331
Query: 433 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 492
LL+GLGPR+TDW DPLPVD D+LP +VP Y+ PFR+LPYGV L E T ++RL R
Sbjct: 332 LLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGR 391
Query: 493 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 552
LP HFALGR+R LQGLAVA++KLWEK +AKIA+KRGVQ T SE M E++K LTGGTL+
Sbjct: 392 PLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLI 451
Query: 553 SRNKDFLVFYRGKNFLSPDVTEALQERERL----------AKSLQDEEEQARLRASAFVL 602
SR+KDF+V YRGK+FL V+ A++ER R L + EE+ + RA
Sbjct: 452 SRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRA----- 506
Query: 603 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 662
+KE ++ ++ K +H+ ++ + +++K KL+ A
Sbjct: 507 --------------VKEDIELEAKDQKDHIQTHQ---MKSRQRNSPEAILEKTSMKLSMA 549
Query: 663 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
K AE+ L+ +E P D E IT++E++M RK+GL+MK FLLLG+
Sbjct: 550 LEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGR 602
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
LR + + K + G+ ++ +H WK E+V++ ++ EILE ++
Sbjct: 587 LRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAES 646
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISM 377
GG+++ G A+ +YRG +YE P + + + E SV K + +
Sbjct: 647 GGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLK 706
Query: 378 SGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
N++ + +D + +++++ ++ + +E +E Q T+
Sbjct: 707 LSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTE 748
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
+ RK+A +++ P FA+GRS + GLA + ++K+ +A + +K T+ +
Sbjct: 882 ILRKQALKMKKR-----PPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSVQE 936
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRG 564
++ +K+ TG L+S+ ++ YRG
Sbjct: 937 VIAKLKEETGALLVSQEPSKVILYRG 962
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 215/498 (43%), Positives = 299/498 (60%), Gaps = 32/498 (6%)
Query: 221 EVKFPWEKRKEEVAEGRWLVKRRSSRT-SLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
E PWE+ +E E VKR+ R SLAELT+ + ELRRLR + K + + AG
Sbjct: 143 EAVLPWERDRESDGEEVDGVKRKRVRAPSLAELTMDDVELRRLRGMGMTLKDRITVPKAG 202
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+TQA+ + IH+ W+ SE+VRLK A +MK HE++ER+TGGL+IWR+G+ + +YRG
Sbjct: 203 VTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVERRTGGLIIWRAGSVMVVYRGS 262
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
+Y P K L +S + KQ + + S + D +D + +
Sbjct: 263 NYTRP--------LKSQTLDGTSSPR---KQEDSALFIPNGSSTVENDNQGKDLAA--QH 309
Query: 400 NNVHATQV-NLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLP 458
+N + N E +EE E E ++LD LGPR+ DW G LPVDAD+LP
Sbjct: 310 DNAPILDLHNTEDMTEE-----------ELEFNQMLDELGPRFVDWWGTGILPVDADLLP 358
Query: 459 GIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWE 518
+PGY+ PFRVLP G+R++L E TNL++LAR LP HFALGR+R QGLA A++KLWE
Sbjct: 359 QTIPGYKAPFRVLPTGMRTSLTNSELTNLRKLARNLPCHFALGRNRNHQGLAAAIVKLWE 418
Query: 519 KSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQE 578
KS + KIA+KRG+Q T ++ M ++IK LTGGTLL RNK ++V YRGK+FL V AL E
Sbjct: 419 KSLVVKIAVKRGIQNTNNKLMSDEIKNLTGGTLLLRNKYYIVIYRGKDFLPTSVAAALAE 478
Query: 579 RERLAKSLQDEEEQARLRASAFVLPSIET-IEKSGTAGTLKETLDANSRWGKRLDDSHKE 637
RE L K +Q+ EEQ R S + S E E GTL E +A +RWG+ + ++
Sbjct: 479 REELTKDIQNLEEQ---RRSISIEHSPEDGFEGHALVGTLAEFQEAQARWGRNVTSKEQQ 535
Query: 638 NLVREAEVRRHA-YLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEE 696
+ +EA R L ++LE KL+ A+ K+ RA + LSK+E S+ A D E IT EE
Sbjct: 536 EM-KEASFRSEKEKLFRRLEHKLSIAQAKIHRAGKLLSKIEASMVLANPSDDREMITAEE 594
Query: 697 RFMFRKLGLRMKAFLLLG 714
R +FR++GL+MKA+L +G
Sbjct: 595 RSVFRRIGLKMKAYLPVG 612
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 355 bits (910), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 209/495 (42%), Positives = 294/495 (59%), Gaps = 29/495 (5%)
Query: 224 FPWEKRKEE---VAEGRWLVKRRSSRT-SLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
PWE+ ++ + E KR+ + SLAELT+ ++ELRRLR + + + + AG
Sbjct: 146 LPWERDQDTDGGMDEEEGGAKRKRVKAPSLAELTMDDAELRRLRGMGMTLRDRITVPKAG 205
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+TQAV + IH+ W+ SE+VRLK A +MK HE++ER+TGGL+IWR+G+ + +YRG
Sbjct: 206 VTQAVTEKIHDAWRKSELVRLKFHEDLANDMKTAHELVERRTGGLIIWRAGSVMVVYRGN 265
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
+Y P+ K L +S +T K + + S A D +D
Sbjct: 266 NYTRPT--------KSQTLDGTS---STRKGEDNTLFIPDASSPAENDNQGKD------- 307
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
+ A NL + D E E E ++LD LGPR+ DW G LPVDAD+LP
Sbjct: 308 --LTAQHDNLSRLNIHNTDDMTEE---ELEFNQMLDELGPRFVDWWGTGILPVDADLLPQ 362
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+PGY+ PFR+LP G+R++L E TNL++LAR LP HFALGR+R QGLA A+IKLWEK
Sbjct: 363 TIPGYKAPFRLLPTGMRTSLTNAELTNLRKLARSLPCHFALGRNRNHQGLASAIIKLWEK 422
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S + KIA+KRG+Q T +E M ++IKKLTGGTLL RNK F+V YRGK+FL V AL ER
Sbjct: 423 SLVVKIAVKRGIQNTNNELMSDEIKKLTGGTLLLRNKYFIVIYRGKDFLPQSVAVALAER 482
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
E L K +Q+ EEQ R + + + GTL E +A +RWG+ + +E +
Sbjct: 483 EELTKDIQNVEEQR--RCTPIAHSPEDGFDGHALVGTLAEFQEAQARWGRDVTSKEQEEM 540
Query: 640 VREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFM 699
+ + ++LE KL+ A+ K+ RA + LSK+E S+ A D E ITDEER +
Sbjct: 541 KEASSRLEKEKIFRRLEHKLSIAQAKIHRAGKLLSKIEASMILANPSDDREMITDEERSV 600
Query: 700 FRKLGLRMKAFLLLG 714
FR++GL+MKA+L +G
Sbjct: 601 FRRIGLKMKAYLPVG 615
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 205/503 (40%), Positives = 292/503 (58%), Gaps = 31/503 (6%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
G + + +++V + R KR + +LAEL+L E ELRRLR + K K ++ AG
Sbjct: 124 GNAILRYHELRKQVKKEREDKKREAKVPTLAELSLSEEELRRLRRIGIAEKRKLKVGKAG 183
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+T+ +V+ IHE+W+ SE+V++ E +NMKR H++LERKTGGLV+WR+G+ + LYRGV
Sbjct: 184 ITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRAGSKIVLYRGV 243
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADK---TAQDPSNF 396
+Y P L+ + + +S+ D H S S S++ D + P+N
Sbjct: 244 NYIYPYF-LSDNTTEND----TSIDAVQDTHKHND-SDKIKSCSSSVDGVKFSGPSPTN- 296
Query: 397 DSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADM 456
V + E + +EV+ LL+GLGPR++DW G +PLPVDAD+
Sbjct: 297 ---KAVRPALIQGVGLPNRVRFQLPGEAQLAEEVDSLLEGLGPRFSDWWGYEPLPVDADL 353
Query: 457 LPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKL 516
LP IVPGYQ PFR+LPYG++ L E T L+RL R LP HF LGR+R+LQGLA ++IKL
Sbjct: 354 LPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKL 413
Query: 517 WEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEAL 576
WEK IAKIA+KRGVQ T SE M E++K+LTGGTLLSR+++F+V YRGK+FL V+ A+
Sbjct: 414 WEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDFLPSAVSSAI 473
Query: 577 QERE----RLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD 632
+ER +AK D A A E +E + ++ N+ L
Sbjct: 474 KERRNHVFNVAKERTDNSTSAETAKEA------EDVEDGTSNSGSQDEFHGNNEQSYDLS 527
Query: 633 DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESI 692
K + +EA R L LEKK +A + L+++E S + + D E I
Sbjct: 528 KQRKLSFTKEAIKRTSIRLSMALEKK--------AKAVKLLAEIENSEMSQQPEIDKEGI 579
Query: 693 TDEERFMFRKLGLRMKAFLLLGK 715
TDEER+M RK+GL+MK FLL+G+
Sbjct: 580 TDEERYMLRKVGLKMKPFLLIGR 602
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 289/468 (61%), Gaps = 32/468 (6%)
Query: 248 SLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPA 307
+LAEL+L + E+ RLR L +Q K K ++ AG+T+ +V+ IHE+W+ SE+VR+ E
Sbjct: 145 TLAELSLTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCR 204
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQAT 367
+NMKR H+ILERKTGGLV+WRSG+ + LYRG+ Y+ P L+ + + E A +
Sbjct: 205 INMKRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYF-LSDEVLREEESDALQPMDSD 263
Query: 368 DKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYE 427
D+ I ++ + S SA A SN + V Q E +
Sbjct: 264 DESIDERKTHSSEMSSATH---AGQSSNIKTVKPALVQGVGTPNRVRFQ---LPGEAELL 317
Query: 428 DEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNL 487
+EV+ LL+GLGPR+TDW G DP+PVDAD+LP ++PG++PPFR+LPYGV+S L E T L
Sbjct: 318 EEVDSLLEGLGPRFTDWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTL 377
Query: 488 QRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLT 547
+RL R LP HFALGR+ +LQG+A A+IK WE+ I IA+KRGVQ T++ +M E+IK LT
Sbjct: 378 KRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRKMAEEIKYLT 437
Query: 548 GGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIET 607
GGTLLSRNK+ +V YRGK+FL V+ A+++R + K+ ++ E ++ + AS+ +
Sbjct: 438 GGTLLSRNKEVIVIYRGKDFLPAAVSSAIKKRWKAVKNKENAENRSAITASSH------S 491
Query: 608 IEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLL 667
K T KET++ + L+ +A+ +Q+ KLA+A K
Sbjct: 492 ERKHMTFIKDKETIE--------------KPLLMKAKA-----AIQRTSFKLAQALEKKE 532
Query: 668 RAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+AE+ L +E+ E + D ESIT+EER+M R++GL+MK FLLLG+
Sbjct: 533 KAEKLLESLEKDESLQEEEIDKESITEEERYMLRRIGLKMKPFLLLGR 580
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 228/602 (37%), Positives = 329/602 (54%), Gaps = 77/602 (12%)
Query: 143 STMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARG 202
S + +I EKL+ G+V + D+ RR G+E K S +IF LP R
Sbjct: 58 SAIQRIAEKLRSLGFVEEKH-----DSPTRRITGEES--GKNSPGEIFVPLPKQLPIHRV 110
Query: 203 GFSKES-------PL---GLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAEL 252
G + ++ P+ G G + E+K W+K E K+ SLAEL
Sbjct: 111 GHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMER------KKEEKVPSLAEL 164
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
TLP +ELRRLR + + K +I AG+T+ +V+ IHE+W+T+E+V++ E +NMKR
Sbjct: 165 TLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKR 224
Query: 313 MHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH 372
H++LE KTGGLVIWRSG+ + LYRGV+Y+ P ++ + ASS+ Q
Sbjct: 225 THDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSRE 284
Query: 373 KQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 432
KQ S++ +S + +K + P + + L EV+ +E ++
Sbjct: 285 KQ-SIAESSAPSITNKMVK-PMLTQGVGSPDKVRFQLPG-----------EVQLVEEADR 331
Query: 433 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 492
LL+GLGPR+TDW DPLPVD D+LP +VP Y+ PFR+LPYGV L E T ++RL R
Sbjct: 332 LLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGR 391
Query: 493 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED---------I 543
LP HFALGR+R LQGLAVA++KLWEK +AKIA+KRGVQ T SE M E+ I
Sbjct: 392 PLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKVVGLLLVI 451
Query: 544 KKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERL----------AKSLQDEEEQA 593
K LTGGTL+SR+KDF+V YRGK+FL V+ A++ER R L + EE+
Sbjct: 452 KWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEI 511
Query: 594 RLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQ 653
+ RA +KE ++ ++ K +H+ ++ + +++
Sbjct: 512 KPRA-------------------VKEDIELEAKDQKDHIQTHQ---MKSRQRNSPEAILE 549
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
K KL+ A K AE+ L+ +E P D E IT++E++M RK+GL+MK FLLL
Sbjct: 550 KTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLL 609
Query: 714 GK 715
G+
Sbjct: 610 GR 611
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
LR + + K + G+ ++ +H WK E+V++ ++ EILE ++
Sbjct: 596 LRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAES 655
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISM 377
GG+++ G A+ +YRG +YE P + + + E SV K + +
Sbjct: 656 GGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLK 715
Query: 378 SGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
N++ + +D + +++++ ++ + +E +E Q T+
Sbjct: 716 LSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTE 757
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
+ RK+A +++ P FA+GRS + GLA + ++K+ +A + +K T+ +
Sbjct: 891 ILRKQALKMKKR-----PPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSVQE 945
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRG 564
++ +K+ TG L+S+ ++ YRG
Sbjct: 946 VIAKLKEETGALLVSQEPSKVILYRG 971
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 211/517 (40%), Positives = 301/517 (58%), Gaps = 43/517 (8%)
Query: 209 PLGLGEEVGSDGEVKFPWEKRKEEVAEGRWL----------VKRRSSRT-SLAELTLPES 257
P L +E D ++ PW ++EE E R + K+R+ + SLAELTL +
Sbjct: 159 PDVLLDEEDEDEKMVVPW--KREEEREMRSIDSGGGIKEEGFKKRTLKAPSLAELTLEDE 216
Query: 258 ELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEIL 317
LRRLR + + + AGLTQ V++ IHE W+ E+VRLK A NM+ H+I+
Sbjct: 217 LLRRLRREGMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRIAHQIV 276
Query: 318 ERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISM 377
ER+TGGLV WR+G+ + +YRG +Y+ P+ P V + + +
Sbjct: 277 ERRTGGLVTWRAGSVMIVYRGKNYQGPAS------------PELDVKEGDGFFVP---DV 321
Query: 378 SGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGL 437
S SLS D A S N N+E + E E E LLD L
Sbjct: 322 SSGSLSKTKDSNATS-----SLENSEQVGRNVELPEKMTEE--------EAEYNALLDDL 368
Query: 438 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 497
GPR+ W G PVDAD+LP VPGY+ P+R+LP G+RS L E T+L+++A+ LP H
Sbjct: 369 GPRFVGWWGTGIPPVDADLLPREVPGYKTPYRLLPTGMRSRLTGAEMTDLRKIAKSLPCH 428
Query: 498 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557
FALGR+R QGLA A++KLWE+S IAKIA+K G+Q T ++ M +++ LTGGTLL RN+
Sbjct: 429 FALGRNRNHQGLACAILKLWERSLIAKIAVKPGIQNTNNKLMADELSTLTGGTLLLRNRF 488
Query: 558 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTL 617
++V YRGK+F+ V L ER+ L K +QD EE+ R +A PS++ E + AG+L
Sbjct: 489 YIVIYRGKDFVPTGVAAVLAERQELTKQVQDVEEKVRCKA-VVATPSVQG-EATAPAGSL 546
Query: 618 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 677
E +A +RWG+ + E +++EA ++ LV+++E K++ A KL RAER L+K+E
Sbjct: 547 AEFYEAQARWGRDVSSEEHERMIKEATKAKNVKLVKQIEHKISLAANKLHRAERLLAKIE 606
Query: 678 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
S+ P D E+ITDEER +FR++GLRMKA+L LG
Sbjct: 607 SSMVPVGPDYDQETITDEERVVFRQIGLRMKAYLQLG 643
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 213/543 (39%), Positives = 311/543 (57%), Gaps = 44/543 (8%)
Query: 188 DIFYVEEGLLPNARGGFSKESPLGLGEE---VGSDGEVKFPWEKRKEEVAEGRWLVKRRS 244
+IF LP R G + + E V G+ + + + EV R K +
Sbjct: 93 EIFVPLPNRLPKYRVGQTLDPSWSTPENPVPVPGSGKAISRYHELRREVKREREAKKGEA 152
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SLAEL+LP ELRRLR + K K ++ AG+T+ +V+ IHE+W+ SE+V++ E
Sbjct: 153 KVPSLAELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCED 212
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVS 364
+NMKR H++LERKTGGLV+WR G+ + LYRG Y+ P Y E SSV+
Sbjct: 213 LCRMNMKRTHDLLERKTGGLVVWRVGSKIVLYRGADYKYP--------YFLAE--TSSVN 262
Query: 365 QATDKQIH------KQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQET 418
+ + + K++ G+ LSA +P + D V + V +
Sbjct: 263 ETSPDAVQNIDVDDKEVDEEGSVLSAVDGAAPPEPRSSDEI--VRPSLVQGVGSPNRVRF 320
Query: 419 DFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRST 478
E + +E ++LLDGLGPR+ DW G DPLPVDAD+LP +V GY+ PFR+LPYGV T
Sbjct: 321 QLPGEAQLTEEADQLLDGLGPRFNDWWGYDPLPVDADLLPAVVSGYRRPFRLLPYGVSPT 380
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
L E T L+RL R LP HFALGR+ + QGLA +++KLWEK IAKIA+KRGVQ T SE
Sbjct: 381 LTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEL 440
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS 598
M +++K LTGGTLLSR+++F+V YRGK+FL V+ A+++R + D +++
Sbjct: 441 MAQELKWLTGGTLLSRDREFIVLYRGKDFLPSAVSSAIEDRRKRG----DMDKRW----- 491
Query: 599 AFVLPSIETIEKSGTAGTLKE----TLDANSRWGKRLDDSH--KENLVREAEVRRHAYLV 652
+ I + T+ LK+ T +A SR +DD++ K +L +R +
Sbjct: 492 ------TDCITSNETSEELKDRSWRTTNAKSR--DEIDDTNDRKHDLSENKNLRSTDAAI 543
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
++ KL+ A K +AE+ LS++E+S + + D E IT+EER+M RK+GL+MK FLL
Sbjct: 544 KRTSIKLSMALEKKAKAEKLLSELEKSEMSQQPEKDKEGITEEERYMLRKIGLKMKPFLL 603
Query: 713 LGK 715
+G+
Sbjct: 604 MGE 606
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 198/455 (43%), Positives = 272/455 (59%), Gaps = 45/455 (9%)
Query: 270 KSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS 329
+ + + AG+TQAV + IH+ W+ SE+VRLK A +MK HE++ER+TGGL+IWRS
Sbjct: 4 RDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRS 63
Query: 330 GTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSA-AADK 388
G+ + +YRG +Y+ P K ++ GNS + AD
Sbjct: 64 GSVMVVYRGSNYKRPL---------------------------KSETLDGNSSAVKGADG 96
Query: 389 T-----AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTD 443
T A P+ DS TQ + Q T+ + E E E ++LD LGPR+ D
Sbjct: 97 TLFIPDASSPTEHDSQGKDVNTQREIAARLNMQNTEDMTE--EELEFNQMLDELGPRFVD 154
Query: 444 WPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRS 503
W G LPVDAD+LP +PGY+ PFR+LP G+R TL E TNL++LAR LP HFALGR+
Sbjct: 155 WWGTGILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRN 214
Query: 504 RQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYR 563
R QGLA A++KLWEKS + KIA+KRG+Q T ++ M E+IK LTGGTLL RNK ++V YR
Sbjct: 215 RNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVIYR 274
Query: 564 GKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS----GTAGTLKE 619
GK+FL V AL ERE L K +Q+ EEQ R +P + +++ S AGTL E
Sbjct: 275 GKDFLPTSVAAALAEREELTKDIQNVEEQKR------CIPVVHSMDDSLDGHALAGTLAE 328
Query: 620 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 679
+A +RWG+ + +E + + L ++LE KL+ A+ K+ RAER LSK+E S
Sbjct: 329 FQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEAS 388
Query: 680 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
+ A D E ITDEER +FR++GLR+KA+L +G
Sbjct: 389 MVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVG 423
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 205/497 (41%), Positives = 278/497 (55%), Gaps = 66/497 (13%)
Query: 224 FPWEKRKEEVAE------GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKG 277
FPW+K +EE AE L K+ + ++LAE TL E ELRRLR L K K I
Sbjct: 108 FPWDKGQEEDAEEPGEQQKEMLKKKNVNASTLAEQTLVEEELRRLRTLGMSLKEKITIPK 167
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
AGLT+AV+D IH W E+VRLK A NMK H+I+E +T GLVI +R
Sbjct: 168 AGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMKLAHQIVEHRTRGLVI---------WR 218
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
SY +Y+ S AT + + + G +++
Sbjct: 219 SGSY--------MWVYRGKNYQGPVESDATSMEKSEAVWWKGENMTPE------------ 258
Query: 398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 457
E E ++LDG GPR+ +W G LPVDAD L
Sbjct: 259 -----------------------------EAEFNRMLDGFGPRFVEWWGTGILPVDADSL 289
Query: 458 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 517
P +VPGY+ P R+LP G+R L E TN+++LA+ LP HFALGR+R LQGLA A+++LW
Sbjct: 290 PPMVPGYKTPLRLLPAGMRPQLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLW 349
Query: 518 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 577
EKS +AKI +KRG+ T +E M +++K LTGGTLL RNK ++V YRGK+F+ V +
Sbjct: 350 EKSLVAKIGVKRGIVNTNNELMAQELKALTGGTLLLRNKYYIVIYRGKDFVPTSVAAVIA 409
Query: 578 ERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKE 637
ER+ L K +QD EE+ R +A PS E E + AG+L E A + WG+ + +E
Sbjct: 410 ERQELTKQVQDVEEKVRCKALDST-PSGED-ESTAQAGSLAEFYVAQACWGRDISTEERE 467
Query: 638 NLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEER 697
+++E ++A LV+K+E KLA A+ K LRAE+ L+K+E SL P D E+ITDEER
Sbjct: 468 RMMQEVAKAKNAKLVKKIECKLAVAQAKRLRAEKLLAKIEASLLPVGPDYDKETITDEER 527
Query: 698 FMFRKLGLRMKAFLLLG 714
MFR +GLRMKA+L LG
Sbjct: 528 VMFRSVGLRMKAYLPLG 544
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 149/363 (41%), Gaps = 43/363 (11%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S + ++ ++ G N + M + L+ TGG ++ R+ + +YR
Sbjct: 340 GLASAILRL----WEKSLVAKIGVKRGIVNTNNELMAQELKALTGGTLLLRNKYYIVIYR 395
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
G + VP+ + I +R EL Q D + + ++ S + TAQ S +
Sbjct: 396 GKDF-VPT-SVAAVIAERQEL----TKQVQDVEEKVRCKALDSTPSGEDESTAQAGSLAE 449
Query: 398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPL--PVDAD 455
Y ++ T E+ V + K V+K+ L + L ++A
Sbjct: 450 FYVAQACWGRDISTEERERMMQEVAKAKNAKLVKKIECKLAVAQAKRLRAEKLLAKIEAS 509
Query: 456 MLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIK 515
+LP + P Y + T+ +E + + + + LG G+ M
Sbjct: 510 LLP-VGPDYD----------KETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHL 558
Query: 516 LWEKSSIAKIALKRGVQLTTSERMVEDIKKL----TGGTLLSRNKD----FLVFYRGKNF 567
W+ + K+ K Q T + VED +L +GG L++ +K L++YRGKN+
Sbjct: 559 HWKHRELVKLITK---QKTLA--FVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNY 613
Query: 568 LSPDVTEALQERERL--AKSLQDEEEQARLRA-SAFVLPSIETIEKSGTAGTLKETLDAN 624
P L+ R L AK+LQ R A S V E IE+ L + L
Sbjct: 614 RRP---MTLRPRNLLTKAKALQRSVVMQRHEALSQHVTELGEKIEEMKKKLGLSQDLGTK 670
Query: 625 SRW 627
RW
Sbjct: 671 DRW 673
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 211/533 (39%), Positives = 306/533 (57%), Gaps = 47/533 (8%)
Query: 197 LPNARGGFSKE----SPL------GLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSR 246
LP R G + E +PL G G S EV+ + R EE + LV
Sbjct: 87 LPKRRVGHTFEPSWSTPLNPVPVPGSGIAALSKSEVRRQKKLRAEESRRRKELV------ 140
Query: 247 TSLAELTLPESELRRLRNLTFQT-KSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGA 305
+LAEL+LP+SE+RRL L F T K K R+ AG+T+ +VD+IHE+WK SE+VR+ E
Sbjct: 141 PTLAELSLPDSEIRRLTTLGFSTTKKKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEEL 200
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
+M+R H++LERKTGGLV+WRSGT + LYRG Y+ P L+ ++ +++ ++
Sbjct: 201 SRDDMRRTHDLLERKTGGLVVWRSGTKIILYRGADYKYPYF-LSDKVTRQDNTSNDALQH 259
Query: 366 --ATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVRE 423
A DK K S S A A + SN ++ V Q D E
Sbjct: 260 VNADDKYCDKSESHLSEKNSVAC---AVENSNAETAKPALILGVGTPNKVRFQLPD---E 313
Query: 424 VKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKE 483
+ ++ + LL GLGPR+TDW G DPLPVDAD+LP ++ GY+ PFR+LPYGV L E
Sbjct: 314 AELAEDTDCLLTGLGPRFTDWWGGDPLPVDADLLPAVIHGYRKPFRLLPYGVNPKLTDDE 373
Query: 484 ATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDI 543
T L+RL + LP HFALGR+R+LQGLA A+IKLWE+ I KIA+KRGVQ T+S+ M +++
Sbjct: 374 MTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKIMAKEL 433
Query: 544 KKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLP 603
K LTGG LLSR+++F VFYRGK++L V+ A++++ + +L+ +
Sbjct: 434 KHLTGGILLSRDREFFVFYRGKDYLPAAVSSAIKKQRNIG--------MYKLKFGNSLSA 485
Query: 604 SIETIEKSGTAGTLKETLDANSRW-GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 662
++ K G T++ NS G K+ ++ +AE +++ KL+ A
Sbjct: 486 TVTPNPKDG-------TIECNSEVKGMNFQKDTKQRMLTKAE-----EAIKRTSIKLSMA 533
Query: 663 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
K +AE+ L K+ + P E++ D E I+ EE++M R++GL MK FLLLG+
Sbjct: 534 LEKKAKAEKLLEKLINAESPQEQEIDKEGISKEEKYMLRRIGLMMKPFLLLGR 586
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEI---LE 318
LR + K + G+ V+ +H WK E+V++ G+ ++ +H+I LE
Sbjct: 571 LRRIGLMMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNGS----LEEVHQIALTLE 626
Query: 319 RKTGGLVI----WRSGTAVSLYRGVSYEV-----PSVQLNKR 351
++GG+++ R G A+ +YRG +Y V P LNKR
Sbjct: 627 AESGGILVAVERVRKGFAIIVYRGKNYSVPVCLRPQTLLNKR 668
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 238/698 (34%), Positives = 366/698 (52%), Gaps = 91/698 (13%)
Query: 49 QNFSSNSAHEKNPPRKTCSFSTN---------NFFSQHDKDDNANLCSSSSWLVKWNKPN 99
Q +S+S K FSTN + +SQHD + N + + K N
Sbjct: 139 QRLTSSSRRGSEMEGKASHFSTNRSESPKPNTSKYSQHDTEGNMHRAPWDQGPARGAKAN 198
Query: 100 KYNRLKP-PQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYV 158
R P P+ N D AR D + GG ++M +IVEKL+ +
Sbjct: 199 PRGRRSPIPK--------NKD------ARGDRENYQGGGQR---ASMARIVEKLRA---I 238
Query: 159 GDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGS 218
G+G+ D D+ E S + + + P +S + +++GS
Sbjct: 239 GNGESATTMDFDK-----NPPATETSSF--LPRPGQAVHPGLDRRWSNSNLEQPSDDLGS 291
Query: 219 DGEVKFPWEKRKEEVAEGRWLV--KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIK 276
+FPW + E E + K+R S+AELTLPE ELRRLR L Q + + +I
Sbjct: 292 ----RFPWAMGENEEQEDHEQIEKKKRVRSPSVAELTLPEPELRRLRTLGLQLQGRLKIG 347
Query: 277 GAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLY 336
G+T +V+ IH++W+TSE+ ++K + ++NMK+ HE LER TGGLVIWR+G+A +Y
Sbjct: 348 RLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRAGSAAVVY 407
Query: 337 RGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNF 396
RG Y P V +R E S+ D++ L A + S+
Sbjct: 408 RGKDYVHPFV------LEREEKELLSLDLDEDEE---------QELLMEAGSEVEMESSI 452
Query: 397 DSYNNVHATQVNLETASEEQETDFVREVKYEDE---VEKLLDGLGPRYTDWPGCDPLPVD 453
+ +V T + E +F+ + + +E+LLDGLGPRY DW G DP+PVD
Sbjct: 453 EECFDV--------TGDQSGEKEFLMKQGQNADLMMMEELLDGLGPRYADWKGKDPVPVD 504
Query: 454 ADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAM 513
D+L ++ PFR+LP+GV+ L E T L+RLAR +PPHF LGR+R L GLA A+
Sbjct: 505 GDLLLDSEFKFKRPFRLLPHGVKPKLNDFEMTQLRRLARPVPPHFVLGRNRGLDGLAAAI 564
Query: 514 IKLWEKSSIAKIALKRGVQLTTSERMVEDIK--------------KLTGGTLLSRNKDFL 559
+KLWEKS I KI +K+GVQ T++E+M E++K +LTGGTLL+R+K+++
Sbjct: 565 MKLWEKSEIVKIGVKKGVQNTSNEKMAEELKARITSKFPSSRITVRLTGGTLLARDKEYI 624
Query: 560 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 619
V RGK+FL V AL+ER+R+AK++Q+EEE+ RL V+ ++T GTL+E
Sbjct: 625 VLSRGKDFLPSAVRVALEERDRMAKAVQEEEERIRLSGRKRVVQIVDT----SKVGTLEE 680
Query: 620 TLDANSRWG--KRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 677
++ + W ++ D++ KE + R A + ++ +K+ A +K RA L+K++
Sbjct: 681 AMETRAAWEGWQKSDEARKERIAARKAKRGQA--MDRIRQKMKLALQKKERAMAELAKID 738
Query: 678 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
P + D E +++ ER+M+R+ GL+ K +LLLG+
Sbjct: 739 AKTNPTDAPLDKEFLSEAERYMYRQQGLKHKGYLLLGR 776
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 59/322 (18%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L E+E R + K + G+ V+ +H WK E+V++ ++ AP ++
Sbjct: 753 LSEAERYMYRQQGLKHKGYLLLGRRGVFGGTVENMHLHWKHRELVKILVK-APIAEAQQT 811
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKR--IYKRNELPAS-SVSQA 366
++LER++GG+++ G A+ +YRG +Y+ PS +L R + KR L S V +
Sbjct: 812 AKMLERESGGILVDIVNTSKGQAIIVYRGKNYQRPS-ELRPRHLLTKRQALKRSLEVQRM 870
Query: 367 TDKQIHKQISMSG-NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
+ H QI M+ ++ A +K + D N TQ NLE DF
Sbjct: 871 QSLEKHIQILMTEIETMQAGLNKMEEQ----DELENEAGTQGNLE--------DF----- 913
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
D + LD +G V + F+ P L RK+
Sbjct: 914 --DATDFNLDNVGKSIQ------------------VKNF---FKAEP------LTRKQRQ 944
Query: 486 NL-QRLARVL--PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 542
+L Q++ +L +F +G++ + LA ++ +K K+ +K + ++ +VE
Sbjct: 945 HLRQQIPLMLGRTANFNIGKTTLYEDLAKSICAYLQKHPFVKVGVKGRPKGSSVASVVEQ 1004
Query: 543 IKKLTGGTLLSRNKDFLVFYRG 564
I++ TG L+S L+FYRG
Sbjct: 1005 IEEHTGAVLVSTEPSKLIFYRG 1026
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 329 bits (843), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 289/479 (60%), Gaps = 41/479 (8%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
+RR SLAEL LP++ELRRLR + TK + ++K G+T+ VV IH+KW+TSEIV+L
Sbjct: 20 QRRVRPPSLAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKL 79
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
K + A+NM+++HE LE++TGGLVIWR+GTA+ +YRG Y P K +P
Sbjct: 80 KCDQEVAMNMRKVHEELEKRTGGLVIWRAGTALVIYRGKDYAGPP--------KERWIPT 131
Query: 361 SSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDF 420
SVS+ + S+ S + + + F + N F
Sbjct: 132 ESVSKPKE-------SVEKPEKSHVSGELLGIDTQFKEFVN---------------HIPF 169
Query: 421 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 480
+ E +YE ++++LL LGPRY DW G P+PVD D LP I ++ P+R+LPYG+ L+
Sbjct: 170 I-EAEYEMQMDRLLAELGPRYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLS 228
Query: 481 RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMV 540
KE TNL RLAR +PP F + R++ LQGLA AM+KLWEK+ I K+A+K+ VQ T + +M
Sbjct: 229 DKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMA 288
Query: 541 EDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF 600
+++K+LTG LL R K ++FYRGK+FL + A +ERE ++ + +D E++AR+
Sbjct: 289 DELKRLTGCVLLGREKTHMIFYRGKDFLPAPIAAAFEEREAMSFANKDVEDKARM----- 343
Query: 601 VLPSIETIEKSGTAGTLKETLDANSR---WGKRLDDSHKENLV-REAEVRRHAYLVQKLE 656
LP+ + EK + +A+ + W K ++ + +V + A R + ++L+
Sbjct: 344 -LPTGKVTEKIVHVEQRPQETEADIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLD 402
Query: 657 KKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ A RK +AE ALSKVE+ +KP E D E+IT+EER+ +++GL+MKAFLLLG+
Sbjct: 403 IVSSFAIRKKEKAEEALSKVEKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLGR 461
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 196/497 (39%), Positives = 293/497 (58%), Gaps = 45/497 (9%)
Query: 223 KFPWEKRKEEVAEG--RWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
KFPWE A +RR SLAEL LP++ELRRLR + TK + ++K G+
Sbjct: 1 KFPWEMEDFSKAPSGEEEQPQRRVRPPSLAELVLPDAELRRLRTMIIHTKERIKVKKLGI 60
Query: 281 TQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVS 340
T+ VV IH+KW+TSEIV+LK + A+NM+++HE LE++TGGLVIWR+G A+ +YRG
Sbjct: 61 TRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWRAGAALVIYRGKD 120
Query: 341 YEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYN 400
Y P K +P SVS+ + S+ S + + + F +
Sbjct: 121 YAGPP--------KERWIPTESVSKPKE-------SVEKPEKSHVSGELLGIDTQFKEFV 165
Query: 401 NVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGI 460
N F+ E +YE ++++LL LGPRY DW G P+PVD D LP I
Sbjct: 166 N---------------HIPFI-EAEYEMQMDRLLAELGPRYADWKGDRPVPVDGDKLPAI 209
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
++ P+R+LPYG+ L+ +E TNL RLAR +PP F + R++ LQGLA AM+KLWEK+
Sbjct: 210 DHNFKSPYRLLPYGMEPKLSDREFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKT 269
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERE 580
I K+A+K+ VQ T + +M +++K+LTG LL R K ++FYRGK+FL + A +ERE
Sbjct: 270 EITKVAIKQSVQSTDNAKMADELKRLTGCVLLGREKTHMIFYRGKDFLPAPIAAAFEERE 329
Query: 581 RLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSR---WGKRLDDSHKE 637
++ + +D E++AR+ LP+ + EK + +A+ + W K ++ +
Sbjct: 330 AMSFANKDVEDKARM------LPTGKVTEKIVHVEQRPQETEADIKLKEWIKNQEEEKRR 383
Query: 638 NLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEER 697
+V +A A +++E++L A RK +AE ALSKVE+ +KP E D E+IT+EER
Sbjct: 384 AIVMKAARAARA---RRIERRLDIAVRKKEKAEEALSKVEKLMKPREPSEDRETITEEER 440
Query: 698 FMFRKLGLRMKAFLLLG 714
+ +++GL+MKAFLLL
Sbjct: 441 YTLQRVGLKMKAFLLLA 457
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 277/482 (57%), Gaps = 39/482 (8%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
+R +LAEL+L ++E+RRL + K R+ AGLT+ +V+ IHE+W++ E+VR+
Sbjct: 117 RREDKVPTLAELSLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRI 176
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
E NMKR H++LERKTGGLV+WRSG+ + LYRG Y+ P +K N A
Sbjct: 177 VCEDLSRFNMKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDA 236
Query: 361 SSVSQATDKQIHKQISMSG--NSLSAAAD----KTAQDPSNFDSYNNVHATQVNLETASE 414
K K+ S S NS++ A KTA+ P+ + + + L
Sbjct: 237 MQHMDEDAKNFDKRESHSSEKNSVTYAGKSSNVKTAK-PALIQGVGSPNKVRFQLPG--- 292
Query: 415 EQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYG 474
E + + + LL G+GPR+ DW G DPLPVDAD+LP ++PGY+ PFR+LPYG
Sbjct: 293 --------EAELAKDADSLLTGIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYG 344
Query: 475 VRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLT 534
V+ L E T ++RL + LP HFALGR+++L GLA A+IKLWE+ I KIA+KRGV T
Sbjct: 345 VKPKLTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNT 404
Query: 535 TSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR 594
E M E+IK LTGGTL++R+K+F+VFYRGK+FL V+ A+++R +
Sbjct: 405 NGELMAEEIKYLTGGTLIARDKEFIVFYRGKDFLPTAVSSAIEQRRSIG----------- 453
Query: 595 LRASAFVLPSIETIEKSGTAGTLKETLDANSRW-GKRLDDSHKENLVREAEVRRHAYLVQ 653
+ L + ++ + T++ +S G K+ ++ EAE ++
Sbjct: 454 ----MYKLKTRNSLSVTDDPDLKDGTIECDSEVKGMNFKKDTKQGMLTEAEA-----AIK 504
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
KL+ A + +AE+ LS++E + P E + + E IT+EE++M R++GL+M FLLL
Sbjct: 505 STSIKLSMALEEKAKAEKLLSELENAESPQEEEINKEGITEEEKYMLRRIGLKMSPFLLL 564
Query: 714 GK 715
G+
Sbjct: 565 GR 566
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
L RK+A +++ P ++G+S + GLA A+ ++K +A + +K + T+ +
Sbjct: 906 LLRKQALKMKKR-----PVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQE 960
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRG 564
+V +++ TG L+S+ + ++ YRG
Sbjct: 961 VVSKLEQETGAVLVSQELNKVILYRG 986
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 204/498 (40%), Positives = 298/498 (59%), Gaps = 32/498 (6%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
GEV+ W+KR +G KR SLAEL+L E EL RLR + + K K + AG
Sbjct: 136 GEVQ-KWKKR-----DGVREKKREERAPSLAELSLTEEELGRLRTIGIRLKKKLNVGKAG 189
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+T+ +V+ IHE W+ SE+V++ E LNMKR H++LERKTGG+V+WRSG+ + LYRG
Sbjct: 190 ITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGP 249
Query: 340 SYEVP--SVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
+Y P S ++ + ++ LPAS + + +S + SA + + PS
Sbjct: 250 NYIYPYFSHEILEDEGSQDALPASHSDDGGNSETESTLSCINDERSAGPTSSVKMPS--- 306
Query: 398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 457
T + A E + ++ E LL+GLGPR++DW G DPLPVDAD+L
Sbjct: 307 ------PTLIQGVGAPNRVRFQLPGEAELAEDAESLLEGLGPRFSDWWGYDPLPVDADLL 360
Query: 458 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 517
P IVPGY+ PFR+LPYGV+ L E T+L+RLAR LP HFALGR+R+LQGLA ++I+LW
Sbjct: 361 PAIVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQLW 420
Query: 518 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 577
EK IAKIA+KRGVQ T ++ M E+++ LTGGTLLSR+++F+V YRGK+FL V+ A++
Sbjct: 421 EKCEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDREFIVLYRGKDFLPFAVSSAME 480
Query: 578 ERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKE 637
++ + L + ++ A+ +E E T + + + W K++ ++
Sbjct: 481 QKRHM--RLHEMKQTDNSPATTGQGLKLEINENGPTNES-----QSITGW-KKIVSERRK 532
Query: 638 NLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEER 697
+ E +R+ + KL+ A K +AE L+K+EE K + + D E IT EER
Sbjct: 533 LMSSETSMRKTSI-------KLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEER 585
Query: 698 FMFRKLGLRMKAFLLLGK 715
+M +K+GLRMK FLLLG+
Sbjct: 586 YMLKKVGLRMKPFLLLGR 603
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 462 PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 521
PGY P L R++A +++L P ++G+S + G+A A+ + ++K S
Sbjct: 897 PGYFPANVPQLSNKERLLLRRQALKMKKL-----PVLSVGKSNVITGVAKAIKEHFKKHS 951
Query: 522 IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+A + +K + T+ + +V +++ TG L+S+ ++ YRG
Sbjct: 952 LAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYRG 994
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 198/519 (38%), Positives = 292/519 (56%), Gaps = 47/519 (9%)
Query: 204 FSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLR 263
FS+ S L + G FPW++ A + LAELT+PE ELRRL+
Sbjct: 32 FSESSSLEGRDSTSQQGS--FPWQRESSSEAPTPVTRPQPPKLPCLAELTIPELELRRLQ 89
Query: 264 NLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGG 323
+ + + ++ G+T+AVV IH +W+ E+V+++ +G A+NMK+ H+ LE KTGG
Sbjct: 90 RIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINMKQTHDELETKTGG 149
Query: 324 LVIWRSGTAVSLYRGVSYEV---PSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGN 380
LV+WR+G LYRG Y S+ N + Y+R ++ N
Sbjct: 150 LVVWRTGGMAILYRGKGYFARVDNSMVANLKKYQRRKI---------------------N 188
Query: 381 SLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPR 440
+ A + + ++ + A + + E + E E Y DE++ LL+ LGPR
Sbjct: 189 LMEAIKIRDEDEDRDYSQSEHGEARR-DSEKGNIEDE--------YLDEIDALLEELGPR 239
Query: 441 YTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFAL 500
Y DW G P+PVD D+LP VPGY+PP R+LPY + L+ E T L+RL + LPPHF L
Sbjct: 240 YDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNMELTVLRRLVKPLPPHFVL 299
Query: 501 GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLV 560
GR+R LQGLA A++KLW+KS + KI LKRGVQ T ++ M E++++LTGG LLSR+K F+
Sbjct: 300 GRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRDKFFIT 359
Query: 561 FYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKET 620
YRGK+FL V L+ERE + L +E+Q R+ A + +G+L E+
Sbjct: 360 LYRGKDFLPTSVAAVLRERESNMRELLLKEDQVRIPAQI----GDGQNRTTPVSGSLSES 415
Query: 621 LDANSRW----GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 676
++ +W ++ D+ + V +VR ++LE KLA A K RA+ + K+
Sbjct: 416 MEMRRQWEAQRSEKDDEMDRNAAVVALKVREQ----KRLEAKLAAAISKKRRADLQIVKL 471
Query: 677 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
E SL +E D E+IT+EER+MF+KLGLRM AFLL+G+
Sbjct: 472 ERSLLLSEHPRDRETITEEERYMFKKLGLRMDAFLLIGR 510
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI---EGAPALN 309
T+ E E + L + + I G+ V++ +H WK E+V+L + + A AL
Sbjct: 486 TITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALE 545
Query: 310 MKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+ +M EI ++GG+++ G A+ +YRG +Y+ P+
Sbjct: 546 VAKMLEI---ESGGILVGVVTTSKGQAIIVYRGKNYQRPA 582
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 248/405 (61%), Gaps = 32/405 (7%)
Query: 310 MKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDK 369
MK HEI+ER+TGGLV+WRSG+ + +YRG +YE PS ++ + + VS AT
Sbjct: 1 MKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPS-KIKPLTRDGDGVFIPDVSSAT-- 57
Query: 370 QIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDE 429
S S N ++ +KT P N E SEE E E
Sbjct: 58 -----TSTSDNVAASVPEKTMM-PIGPPMSN---------EGLSEE-----------EAE 91
Query: 430 VEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQR 489
+LLDGLGPR+ +W G LPVDAD LP +PGY+ PFR+LP G+RS L E T +++
Sbjct: 92 YNQLLDGLGPRFVEWWGTGVLPVDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRK 151
Query: 490 LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGG 549
LA+ LP HFALGR+R QGLAVA++KLWEKS + KIA+KRG+Q T ++ M E+I LTGG
Sbjct: 152 LAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIGNLTGG 211
Query: 550 TLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIE 609
LL RNK F+V YRGK+FL P V AL ER+ L K +QD EE+ R + V + +I
Sbjct: 212 VLLLRNKYFIVIYRGKDFLPPSVAVALTERQELTKQIQDVEEKVR---NKVVEATSLSIN 268
Query: 610 KSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRA 669
AGTL E +A SRWG+ + +E +V E+ + A LV+++E KL A+ K LRA
Sbjct: 269 GQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRA 328
Query: 670 ERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
E+ LSK+E S+ + D E+ITDEER MFR++GLRM A+L +G
Sbjct: 329 EKLLSKIEASMILSSPDDDQETITDEERVMFRRVGLRMTAYLPMG 373
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 134/328 (40%), Gaps = 61/328 (18%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S +V++ ++ G N K M E + TGG+++ R+ + +YR
Sbjct: 170 GLAVAILKL----WEKSLVVKIAVKRGIQNTNNKLMAEEIGNLTGGVLLLRNKYFIVIYR 225
Query: 338 GVSYEVPSV--------QLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKT 389
G + PSV +L K+I E + V +AT +S++G + + +
Sbjct: 226 GKDFLPPSVAVALTERQELTKQIQDVEEKVRNKVVEATS------LSINGQAPAGTLAEF 279
Query: 390 AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEV--------EKLLDGLGPRY 441
+ S + + +E +S + VR ++++ V EKLL
Sbjct: 280 YEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAEKLLS------ 333
Query: 442 TDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALG 501
++A M+ P + T+ +E +R+ + + +G
Sbjct: 334 ---------KIEASMILSS-----------PDDDQETITDEERVMFRRVGLRMTAYLPMG 373
Query: 502 RSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD---- 557
G+ M W+ + K+ K+ L E ++ +GG L+S ++
Sbjct: 374 IRGVFDGVVENMHLHWKHRELVKLISKQKT-LAFVEETARLLEYESGGILVSIDRVPKGY 432
Query: 558 FLVFYRGKNFLSPDVTEALQERERLAKS 585
LV+YRGKN+ P AL+ R L K+
Sbjct: 433 ALVYYRGKNYRRPI---ALRPRNLLTKA 457
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 199/516 (38%), Positives = 290/516 (56%), Gaps = 65/516 (12%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL LP ELRRL+ + +++ ++ AG+T+ +V+ IHE+W+ +E+V+++ + A+NM
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 311 KRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQ 370
KR HEILERKTGGLVIWRSG+ + LYRG Y+ P Q R K + +S + + D+
Sbjct: 198 KRTHEILERKTGGLVIWRSGSTIILYRGTDYKYPYFQ--DREMKNDMDESSEHTSSDDED 255
Query: 371 IHKQISMSGNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE----- 417
I S S S +D A+ SN + V A + NL+ S EQ
Sbjct: 256 ADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSAT 315
Query: 418 ----------TDFVR----------------------------EVKYEDEVEKLLDGLGP 439
T+ R EVK +E +KLLDGLGP
Sbjct: 316 KDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGP 375
Query: 440 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 499
R++DW G DPLPVDAD+LP IVPGY+ PFR+LP GV L +E T L+RLAR LP H+A
Sbjct: 376 RFSDWWGYDPLPVDADLLPAIVPGYRRPFRLLPSGVPPRLTDREMTILRRLARPLPYHYA 435
Query: 500 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 559
LGRS LQGLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +
Sbjct: 436 LGRSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESI 495
Query: 560 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 619
VFYRGK+FL V+ A+++R + S + +++ P + K T
Sbjct: 496 VFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DV 547
Query: 620 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 679
+LD + + K+ D E V + Q +E +L++A + + E+ + ++E S
Sbjct: 548 SLDGHECYEKKHKD---ETAVSDNRAESLNVFTQNVEARLSQAIAEKEKTEKLIEELEMS 604
Query: 680 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+P+ R E I++EER+M RK+GL+MK+FLLLG+
Sbjct: 605 SEPS-RAETREVISEEERYMLRKVGLKMKSFLLLGR 639
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 465 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 909 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 963
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+ +K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 964 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 1004
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 203/502 (40%), Positives = 294/502 (58%), Gaps = 39/502 (7%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
GEV+ W+KR +G KR SLAEL+L E EL RLR + + K K + AG
Sbjct: 156 GEVQ-KWKKR-----DGVREKKREERAPSLAELSLTEEELGRLRTIGIRLKKKLNVGKAG 209
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+T+ +V+ IHE W+ SE+V++ E LNMKR H++LERKTGG+V+WRSG+ + LYRG
Sbjct: 210 ITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGP 269
Query: 340 SYEVP--SVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
+Y P S ++ + ++ LPAS + + +S + SA + PS
Sbjct: 270 NYIYPYFSHEILEDEGSQDALPASHSDDGGNSETESTLSCINDERSAGPTSYVKMPS--- 326
Query: 398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 457
T + A E + ++ E LL+GLGPR++DW G DPLPVDAD+L
Sbjct: 327 ------PTLIQGVGAPNRVRFQLPGEAELAEDAESLLEGLGPRFSDWWGYDPLPVDADLL 380
Query: 458 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 517
P IVPGY+ PFR+LPYGV+ L E T+L+RLAR LP HFALGR+R+LQGLA ++I+LW
Sbjct: 381 PAIVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQLW 440
Query: 518 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 577
EK IAKIA+KRGVQ T ++ M E+++ LTGGTLLSR+++F+V YRGK+FL V+ A++
Sbjct: 441 EKCEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDREFIVLYRGKDFLPFAVSSAME 500
Query: 578 ERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHK- 636
++ + L + ++ A+ +E E T + + + W K + + K
Sbjct: 501 QKRHM--RLHEMKQTDNSPATTGQGLKLEINENGPTNES-----QSITGWKKIVSERRKL 553
Query: 637 ---ENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESIT 693
E +R+ ++ + RK +AE L+K+EE K + + D E IT
Sbjct: 554 MSSETSMRKTSIKLSIVCI-----------RKKAKAEEFLAKLEEEEKLQQPEIDKEGIT 602
Query: 694 DEERFMFRKLGLRMKAFLLLGK 715
EER+M +K+GLRMK FLLLG+
Sbjct: 603 VEERYMLKKVGLRMKPFLLLGR 624
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 462 PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 521
PGY P L R++A +++L P ++G+S + G+A A+ + ++K S
Sbjct: 918 PGYFPANVPQLSNKERLLLRRQALKMKKL-----PVLSVGKSNVITGVAKAIKEHFKKHS 972
Query: 522 IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+A + +K + T+ + +V +++ TG L+S+ ++ YRG
Sbjct: 973 LAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYRG 1015
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/279 (54%), Positives = 209/279 (74%)
Query: 437 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 496
LGPRY DW G P+PVDAD+LPG+VPGY+ PFR+LPY V+STL KE T L+RLAR P
Sbjct: 441 LGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAP 500
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
HFALGR+R+ QGLA A++KLWEKSSIAKIA+KRGV T ++RM E+I+KLTGG LLSRNK
Sbjct: 501 HFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSRNK 560
Query: 557 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 616
+++VFYRG +F++P V + L E++ A + QDEEE ARL+ASA + + + AGT
Sbjct: 561 EYIVFYRGNDFITPKVRQVLVEKQEQAITWQDEEELARLKASASISVKPKVFKNPPVAGT 620
Query: 617 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 676
L ET +A SRWG ++ ++ + +H L++ L++KL A+ K+++AE+AL+KV
Sbjct: 621 LAETREAKSRWGDSINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKV 680
Query: 677 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+E L PAE D E++TDEERF+ R++GL+MKAFL+LG+
Sbjct: 681 QEFLSPAELPTDLETVTDEERFLLRRIGLKMKAFLMLGR 719
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 88/128 (68%), Gaps = 6/128 (4%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
G V PWE+ EG R+ S T LAE T+PE ELRRLR++ + K + R+ G
Sbjct: 312 GPVLLPWER------EGDVDRPRKRSNTELAERTIPEHELRRLRDVALRMKERMRVGPGG 365
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
+TQ +V+ IH+KW+ E+V+L+ EG P+LNMKR H+ILE +TGG+VIWRSG +V LYRG+
Sbjct: 366 VTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIWRSGRSVVLYRGM 425
Query: 340 SYEVPSVQ 347
+Y + VQ
Sbjct: 426 NYNLRCVQ 433
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
T+ + E LR + + K+ + + V +H WK E+V++ ++G +K
Sbjct: 695 TVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKH 754
Query: 313 MHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+ LE ++GG++I G A+ LYRG +Y+ P + + + R + A S+
Sbjct: 755 IAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIELQRR 814
Query: 369 KQIHKQIS 376
+ ++ IS
Sbjct: 815 EGLNHHIS 822
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 253 TLPESELRRLRNLTFQTKSKTRI----KGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPA 307
TL E+ LR L QT + + GL A+V + W+ S I ++ I+ G P
Sbjct: 482 TLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKL----WEKSSIAKIAIKRGVPN 537
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQ 347
RM E + + TGG+++ R+ + YRG + P V+
Sbjct: 538 TCNDRMAEEIRKLTGGVLLSRNKEYIVFYRGNDFITPKVR 577
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 537
T+ +E L+R+ + LGR G M W+ + K+ +K G +
Sbjct: 695 TVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVK-GKSFPQVK 753
Query: 538 RMVEDIKKLTGGTLLSRNKDF----LVFYRGKNFLSPDVTEA---LQERERLAKSLQ 587
+ ++ +GG L+S +K ++ YRGKN+ +P + + L R+ LA+S++
Sbjct: 754 HIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIE 810
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 192/508 (37%), Positives = 283/508 (55%), Gaps = 15/508 (2%)
Query: 211 GLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSR---TSLAELTLPESELRRLRNLTF 267
G+G + S K PW K ++ +V RR+ + + AELTL L RLR
Sbjct: 163 GIGGDENSRIGGKMPWLKTEK-------VVFRRTKKEKVVTAAELTLDPMLLERLRGEAV 215
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+ + ++K AG+T++VVD IH WK+ E+ +K + NM R EILE KT GLVIW
Sbjct: 216 KMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIW 275
Query: 328 RSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAAD 387
+ +YRG +Y+ S K + + + S + Q + + ++ + +
Sbjct: 276 SKKDTLVVYRGSNYQSTSKHFQK--MRPGLVAGADASNSKLNQSNFEDDLTISEIKFHES 333
Query: 388 KTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGC 447
T + D + T + +E + Q V YE E ++LLDGLGPR+ DW
Sbjct: 334 TTGEKMGRKDGEEDSSPTGIFMEEMVDSQP---VNGSLYEREADRLLDGLGPRFIDWWRP 390
Query: 448 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 507
PLPVDAD+LP ++PG++PPFR+ P RS L E T L++LA LP HF LGR+R+LQ
Sbjct: 391 KPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQ 450
Query: 508 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 567
GLA A++KLWEKS I KIA+K G+ T +E+M ++K LTGG LL RNK F++ YRGK+F
Sbjct: 451 GLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGKDF 510
Query: 568 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 627
L V + ERE K Q EE ARL+A + + + + T GTL E + + +
Sbjct: 511 LPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEF 570
Query: 628 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 687
D + + + EAE R ++K E+ L +RK+ R+ + L+K+ + +PA+ A
Sbjct: 571 RGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADHDA 630
Query: 688 DPESITDEERFMFRKLGLRMKAFLLLGK 715
D E IT+EER FRK+G +M + LLLG+
Sbjct: 631 DKEMITEEERECFRKIGQKMDSSLLLGR 658
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 73/355 (20%), Positives = 143/355 (40%), Gaps = 48/355 (13%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKR 312
L + EL LR L + + + Q + I + W+ S IV++ I+ G P ++
Sbjct: 422 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 481
Query: 313 MHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ--ATDKQ 370
M L+ TGG+++ R+ + LYRG + +P N + + E + + A K
Sbjct: 482 MANELKCLTGGVLLLRNKFFIILYRGKDF-LPCRVANLIVEREMEFKGCQIREEDARLKA 540
Query: 371 IHKQISMSGNSLSAAADKTAQDPSNFDS-YNNVHATQVNLETASEEQETDFVREVKYED- 428
I + + T + N ++ + + +E E ++ +E+K ++
Sbjct: 541 IETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELEAEKERLEKELKKQER 600
Query: 429 -------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLAR 481
++E+ L + W D DAD + +
Sbjct: 601 NLFILKRKIERSAKVLAKLNSAWRPADH---DAD--------------------KEMITE 637
Query: 482 KEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK-IALKRGV-QLTTSERM 539
+E +++ + + LGR G+ + + W+ I K I ++R Q+ + ++
Sbjct: 638 EERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKL 697
Query: 540 VEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSPD---VTEALQERERLAKSLQ 587
+E +GG L+S +K ++ YRGKN+ P L +RE L +SL+
Sbjct: 698 LES---ESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLE 749
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 178/422 (42%), Positives = 247/422 (58%), Gaps = 27/422 (6%)
Query: 143 STMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARG 202
+ + +I EKL+ GYV D DE R GS +IF LP R
Sbjct: 272 TAIQRIAEKLRSLGYV---------DGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRV 322
Query: 203 GFSKESPLGLGE----EVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESE 258
G + + L E E G+ G + E RKE E + + K +LAELTLPE E
Sbjct: 323 GHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEE 382
Query: 259 LRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILE 318
LRRL+ + Q + K ++ AG+T+ +V+ IHE+W+ +E+V+++ E LNMKR H+ILE
Sbjct: 383 LRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILE 442
Query: 319 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH-KQISM 377
RKTGGLVIWRSG+ + LYRG +Y+ P + + + ASS SQ +++ K++
Sbjct: 443 RKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCS 502
Query: 378 SG-NSLSAAADKTAQDPSNFDSYNNV-HATQVNLETASEEQETDFVREVKYEDEVEKLLD 435
SG + +A A + V + T+V + E Q E+E ++LLD
Sbjct: 503 SGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQ---------LEEEADRLLD 553
Query: 436 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 495
GLGPR+TDW G DPLP+DAD+LP +VPGY+ PFR+LPYG++ L E T L+RL R LP
Sbjct: 554 GLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLP 613
Query: 496 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 555
HFALGR+R+LQGLA +MIKLWEK IAKIA+KRGVQ T SE M E++K +G ++
Sbjct: 614 CHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELK--SGSSIFGNC 671
Query: 556 KD 557
K+
Sbjct: 672 KN 673
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 14/178 (7%)
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE-EQARLRA 597
++E+++ LTGGTLLSR+++F+VFYRGK+FL P V+ A++ R + ++ + RL
Sbjct: 840 ILEEVRNLTGGTLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAI 899
Query: 598 SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEK 657
+A + GT + D + DD +L + +R +V++
Sbjct: 900 NA----------EESELGTSEHASDKDC---DGTDDQKTNSLSKRRMLRSAEAVVERTSI 946
Query: 658 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KL+ A K RAE+ L+++EE+ P + + D E IT+EER+M RK+GLRMK FLLLG+
Sbjct: 947 KLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGR 1004
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 154/368 (41%), Gaps = 64/368 (17%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
+ E E LR + + K + G+ V+ +H WK E+V++ G ++ +
Sbjct: 981 ITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGV 1040
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVP-----------------SVQLNKRI 352
LE ++GG+++ G A+ +YRG +Y+ P S++ +R
Sbjct: 1041 ARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREAMKRSLEAQRRE 1100
Query: 353 YKRNELPASSVSQATDKQ---------------IHKQISM--SGNSL-SAAADKTAQDPS 394
+ RN+ ++ Q DK IH M S +SL ++ DK PS
Sbjct: 1101 FSRNKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSLQTSHNDKRIDFPS 1160
Query: 395 NFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDA 454
DS + + + E+ +E ET+ + ++ E+E D L + C +
Sbjct: 1161 MCDSDTDEANPEPSSESVLKEIETNVLTDMNEEEECATCSDDLVSQGQT--SCYAIVNHE 1218
Query: 455 DMLPGIV---------PGYQP--------PFRVLPYGVRS-TLARKEATNLQRLARVLPP 496
+ + V P +P PFR P R L RK+A +++ P
Sbjct: 1219 ETMESSVKSSKNEFKPPVQRPVDTRSNEMPFRAAPLSNRERLLLRKQALRMKKR-----P 1273
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
A+GRS + G+A + ++K +A + +K + T+ + +V +++ TG L+S+
Sbjct: 1274 VIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEP 1333
Query: 557 DFLVFYRG 564
++ YRG
Sbjct: 1334 SKVILYRG 1341
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/292 (52%), Positives = 206/292 (70%), Gaps = 7/292 (2%)
Query: 429 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQ 488
E+ LLD LGPR+ DW GC P PVDAD+LPG V GY+ PFR+LP GV+ L+ E T ++
Sbjct: 338 ELNDLLDELGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMR 397
Query: 489 RLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTG 548
RLAR PPHFALGRSR+LQGLA AM+KLW KS+IAKIA+KRGV+ T +ERM E++K+LT
Sbjct: 398 RLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTR 457
Query: 549 GTLLSRNKDFLVFYRGKNFLSPDVTEALQERER-LAKSLQDEEEQARLRASAFVLPSIET 607
G L+SRNK+++VFYRG +F+ P V EAL ER++ + + LQ +E+Q R AS V ++ +
Sbjct: 458 GVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQTKEDQVREMASTRV--TLTS 515
Query: 608 IEKSG----TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663
KS AGTL ET+ A+SRW E L RE+ + A L++ LE +L +
Sbjct: 516 QAKSPKTQLLAGTLAETIAASSRWAPDASSVDIEELKRESASIKRAALIRDLELRLLYGK 575
Query: 664 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+KL RAER L+KV++ L P+E D E+IT+EER ++RK+GL M FLLLG+
Sbjct: 576 QKLRRAERDLAKVQKDLDPSELPTDSETITEEERLLYRKIGLSMDPFLLLGR 627
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 178 ERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSD-GEVKFPWEKRKEEVAEG 236
E+ +E S +D+ V+ N +S L GE D G+ K W+ R+ AE
Sbjct: 177 EQGVESSSFDDVITVDRYRRDNDSSNRGVDSDLDDGERGMIDSGKDKGIWKTRRSNTAE- 235
Query: 237 RWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSE 296
AE +PE ELRRLR++ + + ++ AG+TQ +V IHEKW+ E
Sbjct: 236 -------------AERVVPEHELRRLRSVALRMVERVKVGSAGITQVLVQAIHEKWEVDE 282
Query: 297 IVRLKIEGAPALNMKRMHEILE 318
+V+LK +LNMKR HE+LE
Sbjct: 283 VVKLKFGEPFSLNMKRTHEVLE 304
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 50/312 (16%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL +A+V + W S I ++ I+ G +RM E L+R T G+++ R+ + YR
Sbjct: 417 GLAKAMVKL----WAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYR 472
Query: 338 GVSYEVPSVQ-------------LNKRIYKRNELPASSVSQATDKQIHKQISMSGN--SL 382
G + P+V L + + E+ ++ V+ + + K ++G
Sbjct: 473 GNDFMPPAVAEALTERQKEITEVLQTKEDQVREMASTRVTLTSQAKSPKTQLLAGTLAET 532
Query: 383 SAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYT 442
AA+ + A D S+ D ++ E+AS ++ +R+++ +LL G +
Sbjct: 533 IAASSRWAPDASSVD------IEELKRESASIKRAA-LIRDLEL-----RLL--YGKQKL 578
Query: 443 DWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGR 502
D V D+ P +P T+ +E +++ + P LGR
Sbjct: 579 RRAERDLAKVQKDLDPSELPTDS-----------ETITEEERLLYRKIGLSMDPFLLLGR 627
Query: 503 SRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF---- 558
G M W+ + K+ + RG L + + ++ +GG L+S +K
Sbjct: 628 REVYDGTIENMHLHWKHRELVKVIV-RGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYS 686
Query: 559 LVFYRGKNFLSP 570
++ YRGKN+ P
Sbjct: 687 IILYRGKNYQMP 698
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 277/524 (52%), Gaps = 44/524 (8%)
Query: 202 GGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRR 261
GGF E EE G+ + PWEK + + L + + + AEL L L R
Sbjct: 147 GGFDLEG----FEESGT--RRRMPWEKDDDGIV----LRRMKKKTVTSAELNLDRVLLER 196
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
L+ + + ++ G+TQ VV+ I W+ +E+ LK + + NM R EI+E KT
Sbjct: 197 LKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKFDVPLSRNMDRAREIVEMKT 256
Query: 322 GGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNS 381
GG+V+W A+ +YRG +Y + ++ +T KQ+H IS N
Sbjct: 257 GGMVVWSKKNALVVYRGCNYPL------------------NLKHSTKKQVH--IS-PQNP 295
Query: 382 LSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDF--VREVK--------YEDEVE 431
+ D +++S N +N E+ + F +R YE E +
Sbjct: 296 VKVETDTHFSLSGHYESGLN---RSINDNDGEWEEASSFFLIRHENLQPLSGSLYERETD 352
Query: 432 KLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLA 491
+LLD LGPR+ DW PLPVDADMLP +VPGY PPFR P + L +L++LA
Sbjct: 353 RLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLA 412
Query: 492 RVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTL 551
LP HF LGR+R+LQGLA +++KLWEKS IAKIALK GV T +E+M ++K LTGGTL
Sbjct: 413 HSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTL 472
Query: 552 LSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS 611
L RNK ++ YRG +FL V +++ +RE + Q EE +RL+AS F E +E+
Sbjct: 473 LLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTENMEER 532
Query: 612 GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAER 671
G AGTL + D + S + L EAE + ++ E++L K+ ++ +
Sbjct: 533 GKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKGKIIRGLRMQERRLKILNFKVEKSTK 592
Query: 672 ALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
L+K+ S + E AD E IT+EER FRK+GL+M + L LG+
Sbjct: 593 ELTKLNASWRRVEPDADQELITNEERICFRKMGLKMDSCLTLGR 636
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 186/503 (36%), Positives = 270/503 (53%), Gaps = 58/503 (11%)
Query: 213 GEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSK 272
EEV S G + PWEK ++ G VKR + T+ AELTL ++ LRRLRN + ++
Sbjct: 136 NEEVRSKG--RMPWEKDEKF---GFVKVKREKAVTA-AELTLDKALLRRLRNEAARMRTW 189
Query: 273 TRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
++K AG+TQ VVD I W+ +E+ +K + NM R EI+E KTGGLV+
Sbjct: 190 IKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVETKTGGLVVLSKKDF 249
Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQD 392
+ +YRG ++
Sbjct: 250 LVVYRGCNHH-------------------------------------------------- 259
Query: 393 PSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPV 452
S ++N H ++ T ++ V YE E E+LLDGLGPR+ DW PLPV
Sbjct: 260 SSEMLNWNADHKDSIS--TGIQDVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPLPV 317
Query: 453 DADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVA 512
DAD+LP VPG+QPPFR+ P + L E T ++LA+ LP HF LGR++ L+GLA A
Sbjct: 318 DADLLPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASA 377
Query: 513 MIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDV 572
++KLWEKS IAKIA+K G+ T +E M ++K LTGG LL RNK +++ YRG +FL V
Sbjct: 378 ILKLWEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPRSV 437
Query: 573 TEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD 632
+++RE KS Q EE AR++A P E + T+GTL E ++
Sbjct: 438 ASLVEKRELELKSRQLHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDTKS 497
Query: 633 DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESI 692
+ N+ EAE+ R +++ +++ +K+ R+ER LSK+ + P+E+ D E +
Sbjct: 498 VNVDSNIQLEAEICRLEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLEIM 557
Query: 693 TDEERFMFRKLGLRMKAFLLLGK 715
TDEER FRK+GL+M++ LLLG+
Sbjct: 558 TDEERECFRKIGLKMQSSLLLGR 580
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 247 TSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAP 306
T L +T E E R + + +S + G+ V++ +H+ WK E+V++
Sbjct: 552 TDLEIMTDEEREC--FRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKL 609
Query: 307 ALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNE 357
+ ++LE ++GG+++ + G A+ +YRG +Y+ PS++L K + + E
Sbjct: 610 FSQVINTAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKRE 664
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 137/342 (40%), Gaps = 76/342 (22%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S I ++ I+ G P + + M L+ TGG+++ R+ + LYR
Sbjct: 373 GLASAILKL----WEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYR 428
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS-MSGNSLSAAADKTAQDPS-- 394
G + SV + ++ EL S +Q+H++++ M + D+ D S
Sbjct: 429 GNDFLPRSVA---SLVEKRELELKS------RQLHEEVARMKAIQAFSPIDEVPLDTSTS 479
Query: 395 -------------------NFDSYNNVHATQVNLET-ASEEQETDFVREVKYEDEVEKLL 434
N DS + A LE EEQ F+ K + E+ L
Sbjct: 480 GTLTEFRKIQTKLEDTKSVNVDSNIQLEAEICRLEKELKEEQRRAFILNKKIKRS-EREL 538
Query: 435 DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 494
L +T P D D+ + +E +++ +
Sbjct: 539 SKLNAAWT------PSEQDTDL--------------------EIMTDEERECFRKIGLKM 572
Query: 495 PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV--QLTTSERMVEDIKKLTGGTLL 552
LGR G+ + + W+ + K+ + + Q+ + +++E +GG L+
Sbjct: 573 QSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLET---ESGGILV 629
Query: 553 SRNK----DFLVFYRGKNFLSPDVTEA---LQERERLAKSLQ 587
S +K ++ YRGKN+ P + A L +RE L +SL+
Sbjct: 630 SVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLE 671
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 192/511 (37%), Positives = 281/511 (54%), Gaps = 28/511 (5%)
Query: 213 GEEVGSDGEVK-FPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQT-K 270
GEE G DG + PW ++E + ++++ + + AE L +EL RLR T
Sbjct: 112 GEEAGGDGNGRPAPWSAARDEGLKAALRRQKKARQPTPAERLLDPAELDRLRRAARGTGD 171
Query: 271 SKTRIKGAGLTQAVVDIIHEKWKT-SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS 329
R K AG+T VV+ + W E+ +++ M R EILE K+GGLV+W
Sbjct: 172 GWLRAKKAGVTDEVVEDVCRVWSGGQELAAVRVVEPLRRCMDRAREILEIKSGGLVVWTK 231
Query: 330 GTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKT 389
G +YRG SY K I +P + + H+ S A T
Sbjct: 232 GDVHFVYRGSSYLENIKHRQKSIADIQRVPLEKCTAPGPQWKHE---------SNAEPST 282
Query: 390 AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
N D++ +L + E+ V YE EV +LLD LGPR+ DW P
Sbjct: 283 NH---NDDAHGVFRGIDPSLAVHAYEEP---VEGTLYEREVNRLLDSLGPRFVDWWWNTP 336
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP +VPG++ PFR P GVR TLA +E T L++LAR LP HFALGR+ +LQGL
Sbjct: 337 LPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQGL 396
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 397 AAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNKDFVILYRGKDFLP 456
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFV-----LPSIETIEKSGTAGTLKETLDAN 624
V +++ E+E + Q +EE+ARL + LPS E+ + G+ +E D
Sbjct: 457 GGVKQSVIEQEARVYAQQVKEEEARLMVMDSLKMFAGLPSEES-----SVGSFREYQDFQ 511
Query: 625 SRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAE 684
+ +++ + EAE R ++ E++L +K+ R+ AL+K+ S P+E
Sbjct: 512 LNHVQETTENNMALIELEAEKHRLEKELKDQERRLFILTKKIERSNEALAKLHNSWNPSE 571
Query: 685 RQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ AD E +T+EER +FRK+GL+M +LLG+
Sbjct: 572 QSADKELLTEEERMIFRKIGLKMDEHVLLGR 602
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 137/352 (38%), Gaps = 77/352 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L AV+ + W+ S I ++ ++ G
Sbjct: 365 TLADEELTYLRKLARPLPTHFALGRNTRLQG--LAAAVLKL----WEKSLIAKIAVKVGI 418
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPS------VQLNKRIYKRNELP 359
N ++M L+ TGG +I R+ V LYRG + +P ++ R+Y
Sbjct: 419 QNTNNEQMAWNLKHLTGGTIILRNKDFVILYRGKDF-LPGGVKQSVIEQEARVY------ 471
Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETAS------ 413
+Q ++ + + M + A +F Y + V T +
Sbjct: 472 ----AQQVKEEEARLMVMDSLKMFAGLPSEESSVGSFREYQDFQLNHVQETTENNMALIE 527
Query: 414 -EEQETDFVREVKYED--------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGY 464
E ++ +E+K ++ ++E+ + L + W +P AD
Sbjct: 528 LEAEKHRLEKELKDQERRLFILTKKIERSNEALAKLHNSW---NPSEQSAD--------- 575
Query: 465 QPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK 524
+ L +E +++ + H LGR G+ + + W+ I K
Sbjct: 576 -----------KELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVK 624
Query: 525 IALK--RGVQLTTSERMVEDIKKLTGGTLLS----RNKDFLVFYRGKNFLSP 570
+ K + Q+T + ++E TGG L++ N ++ YRGKN+ P
Sbjct: 625 VITKQNQAYQITYTSMLLE---VETGGMLIATQKLTNSHAIILYRGKNYHRP 673
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L E E R + + + G+ V++ IH+ WK EIV++ + A +
Sbjct: 579 LTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYT 638
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+LE +TGG++I + A+ LYRG +Y P+
Sbjct: 639 SMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPT 674
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 192/511 (37%), Positives = 281/511 (54%), Gaps = 28/511 (5%)
Query: 213 GEEVGSDGEVK-FPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQT-K 270
GEE G DG + PW ++E + ++++ + + AE L +EL RLR T
Sbjct: 112 GEEAGGDGNGRPAPWSAARDEGLKAALRRQKKARQPTPAERLLDPAELDRLRRAARGTGD 171
Query: 271 SKTRIKGAGLTQAVVDIIHEKWKT-SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS 329
R K AG+T VV+ + W E+ +++ M R EILE K+GGLV+W
Sbjct: 172 GWLRAKKAGVTDEVVEDVCRVWSGGQELAAVQVVEPLRRCMDRAREILEIKSGGLVVWTK 231
Query: 330 GTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKT 389
G +YRG SY K I +P + + H+ S A T
Sbjct: 232 GDVHFVYRGSSYLENIKHRQKSIADIQRVPLEKCTAPGPQWKHE---------SNAEPST 282
Query: 390 AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
N D++ +L + E+ V YE EV +LLD LGPR+ DW P
Sbjct: 283 NH---NDDAHGVFRGIDPSLAVHAYEEP---VEGTLYEREVNRLLDSLGPRFVDWWWNTP 336
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP +VPG++ PFR P GVR TLA +E T L++LAR LP HFALGR+ +LQGL
Sbjct: 337 LPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQGL 396
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 397 AAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNKDFVILYRGKDFLP 456
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFV-----LPSIETIEKSGTAGTLKETLDAN 624
V +++ E+E + Q +EE+ARL + LPS E+ + G+ +E D
Sbjct: 457 GGVKQSVIEQEARVYAQQVKEEEARLMVMDSLKMFAGLPSEES-----SVGSFREYQDFQ 511
Query: 625 SRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAE 684
+ +++ + EAE R ++ E++L +K+ R+ AL+K+ S P+E
Sbjct: 512 LNHVQETTENNMALIELEAEKHRLEKELKDQERRLFILTKKIERSNEALAKLHNSWNPSE 571
Query: 685 RQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ AD E +T+EER +FRK+GL+M +LLG+
Sbjct: 572 QSADKELLTEEERMIFRKIGLKMDEHVLLGR 602
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 147/372 (39%), Gaps = 80/372 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L AV+ + W+ S I ++ ++ G
Sbjct: 365 TLADEELTYLRKLARPLPTHFALGRNTRLQG--LAAAVLKL----WEKSLIAKIAVKVGI 418
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPS------VQLNKRIYKRNELP 359
N ++M L+ TGG +I R+ V LYRG + +P ++ R+Y
Sbjct: 419 QNTNNEQMAWNLKHLTGGTIILRNKDFVILYRGKDF-LPGGVKQSVIEQEARVY------ 471
Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETAS------ 413
+Q ++ + + M + A +F Y + V T +
Sbjct: 472 ----AQQVKEEEARLMVMDSLKMFAGLPSEESSVGSFREYQDFQLNHVQETTENNMALIE 527
Query: 414 -EEQETDFVREVKYED--------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGY 464
E ++ +E+K ++ ++E+ + L + W +P AD
Sbjct: 528 LEAEKHRLEKELKDQERRLFILTKKIERSNEALAKLHNSW---NPSEQSAD--------- 575
Query: 465 QPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK 524
+ L +E +++ + H LGR G+ + + W+ I K
Sbjct: 576 -----------KELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVK 624
Query: 525 IALK--RGVQLTTSERMVEDIKKLTGGTLLS----RNKDFLVFYRGKNFLSP---DVTEA 575
+ K + Q+T + ++E TGG L++ N ++ YRGKN+ P +
Sbjct: 625 VITKQNQAYQITYTSMLLE---VETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNL 681
Query: 576 LQERERLAKSLQ 587
L +RE L +S++
Sbjct: 682 LTKREALRRSVE 693
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 182/503 (36%), Positives = 268/503 (53%), Gaps = 38/503 (7%)
Query: 223 KFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQ 282
+ PWEK + + L + + + AEL L L RL+ + + ++ G+TQ
Sbjct: 162 RMPWEKDDDGIV----LRRMKKKTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQ 217
Query: 283 AVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
VV+ I W+ +E+ LK + + NM R EI+E KTGG+V+W A+ +YRG +Y
Sbjct: 218 DVVNQIQFMWERNELAMLKFDVPLSRNMDRAREIVEMKTGGMVVWSKKNALVIYRGCNYP 277
Query: 343 VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 402
+ ++ +T KQ+H IS N + D +++S N
Sbjct: 278 L------------------NLKHSTKKQVH--IS-PQNPVKVETDTHFSLSGHYESGLN- 315
Query: 403 HATQVNLETASEEQETDF--VREVK--------YEDEVEKLLDGLGPRYTDWPGCDPLPV 452
+N E+ + F +R YE E ++LLD LGPR+ DW PLPV
Sbjct: 316 --RSINDNDGEWEEASSFFLIRHENLQPLSGSLYERETDRLLDDLGPRFIDWWMHKPLPV 373
Query: 453 DADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVA 512
DADML +VPGY PPFR P + L +L++LA LP HF LGR+R+LQGLA +
Sbjct: 374 DADMLQEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLAHSLPTHFVLGRNRKLQGLAAS 433
Query: 513 MIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDV 572
++KLWEKS IAKIALK GV T +E+M ++K LTGGTLL RNK ++ YRG +FL V
Sbjct: 434 ILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRNKFVIILYRGNDFLPVGV 493
Query: 573 TEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD 632
+++ +RE + Q EE +RL+AS F E +E+ G AGTL + D +
Sbjct: 494 ADSIIQREVELQRWQLHEENSRLKASEFFCFDTENMEERGKAGTLSDFKDITVGYEDLST 553
Query: 633 DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESI 692
S + L EAE + ++ E++L K+ ++ + L+K+ S + E AD E I
Sbjct: 554 GSTESRLQAEAEKXKIIRGLRMQERRLKILNFKVEKSTKELTKLNASWRRVEPDADQELI 613
Query: 693 TDEERFMFRKLGLRMKAFLLLGK 715
T+EER FRK+GL+M + L LG+
Sbjct: 614 TNEERICFRKMGLKMDSCLTLGR 636
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 189/509 (37%), Positives = 279/509 (54%), Gaps = 26/509 (5%)
Query: 213 GEEVGSDGEVK-FPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKS 271
GEE G DG + PW ++E + ++++ + + AE L +EL RLR T
Sbjct: 112 GEEAGGDGNGRPAPWSAARDEGLKAALRRQKKARQPTPAERLLDPAELDRLRRAARGTGD 171
Query: 272 K-TRIKGAGLTQAVVDIIHEKWKT-SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS 329
R K AG+T VV+ + W E+ +++ M R EILE K+GGLV+W
Sbjct: 172 GWLRAKKAGVTDEVVEDVCRVWSGGQELAAVRVVEPLRRCMDRAREILEIKSGGLVVWTK 231
Query: 330 GTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKT 389
G +YRG SY K I +P + + H+ S A T
Sbjct: 232 GDVHFVYRGSSYLENIKHRQKSIADIQRVPLEKCTAPGPQWKHE---------SNAEPST 282
Query: 390 AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
N D++ +L + E+ V YE EV +LLD LGPR+ DW P
Sbjct: 283 NH---NDDAHGVFRGIDPSLAVHAYEEP---VEGTLYEREVNRLLDSLGPRFVDWWWNTP 336
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP +VPG++ PFR P GVR TLA +E T L++LAR LP HFALGR+ +LQGL
Sbjct: 337 LPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQGL 396
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 397 AAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNKDFVILYRGKDFLP 456
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETI----EKSGTAGTLKETLDANS 625
V +++ E+E + Q +EE+ARL V+ S++ + + G+ + D
Sbjct: 457 GGVKQSVIEQEARVYAQQVKEEEARL----MVMDSLKMFAGLPSEESSVGSFRGYQDFQL 512
Query: 626 RWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAER 685
+ +++ + EAE R ++ E++L +K+ R+ AL+K+ S P+E+
Sbjct: 513 NHVQETTENNMALIELEAEKHRLEKELKDQERRLFILTKKIERSNEALAKLHNSWNPSEQ 572
Query: 686 QADPESITDEERFMFRKLGLRMKAFLLLG 714
AD E +T+EER +FRK+GL+M +LLG
Sbjct: 573 SADKELLTEEERMIFRKIGLKMDEHVLLG 601
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 181/496 (36%), Positives = 270/496 (54%), Gaps = 52/496 (10%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQA 283
PW ++E + +++ + AE L EL RLR L R K AG+T
Sbjct: 140 VPWAAARDEGLKVALRREKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDE 199
Query: 284 VVDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
VV + +W + E + ++I +M R EILE KTGGLV+W G +YRG Y
Sbjct: 200 VVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKY- 258
Query: 343 VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 402
Q K H ++ NV
Sbjct: 259 ----------------------QQNAKHSHTFLT------------------------NV 272
Query: 403 H---ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
H A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 273 HKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPE 332
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
VPG++ P+R+ P GVR TLA +E T L++LAR+LP HFALGR+ +LQGLA A++KLWEK
Sbjct: 333 FVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEK 392
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL V + + +R
Sbjct: 393 SLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQR 452
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
E Q +EE+ARL+A L + + + + GT +E ++++ ++ +
Sbjct: 453 EAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMI 511
Query: 640 VREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFM 699
EAE R ++ E KL+ +K+ R+ +AL+K+ S P+E+ AD E +T+EE+ M
Sbjct: 512 ELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIM 571
Query: 700 FRKLGLRMKAFLLLGK 715
FR++G +M +LLG+
Sbjct: 572 FRRIGRKMDGLVLLGR 587
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 79/371 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L A++ + W+ S I ++ ++ G
Sbjct: 351 TLADEELTYLRKLARLLPTHFALGRNTRLQG--LAAAILKL----WEKSLIAKIAVKIGI 404
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
N ++M L+ TGG VI R+ + LYRG + +P + + + +R +Q
Sbjct: 405 QNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDF-LPG-GVAQTVIQRE-------AQ 455
Query: 366 ATDKQIHKQISM--SGNSLSAAADKTAQDP-SNFDSYNNVHATQVNLETAS-------EE 415
D+Q+ ++ + + +SL + + + F Y HA V+ T + E
Sbjct: 456 VHDEQVKEEEARLKAVDSLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEA 515
Query: 416 QETDFVREVKYED--------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 467
++ +E+K + ++E+ L ++ W P AD
Sbjct: 516 EKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSW---SPSEQSAD------------ 560
Query: 468 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 527
R L +E +R+ R + LGR G+ + + W+ + K+
Sbjct: 561 --------REHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVIT 612
Query: 528 K----RGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSP---DVTEAL 576
K R + S VE TGG L++ K ++ YRGKN+ P + L
Sbjct: 613 KQNQTRQIMYAASLLEVE-----TGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLL 667
Query: 577 QERERLAKSLQ 587
+RE L +S++
Sbjct: 668 TKREALRRSIE 678
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 188/507 (37%), Positives = 282/507 (55%), Gaps = 37/507 (7%)
Query: 213 GEEVGSDGEVK-FPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKS 271
G+EV + + PW ++E + +++ + + AE L EL RLR L
Sbjct: 127 GQEVVEKAKPRAVPWAAARDEGLKVALRREKKPRKPTRAETELETDELDRLRRLARGMGR 186
Query: 272 KTRIKGAGLTQAVVDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSG 330
R K AG+T VV+ + +W + E + ++I +M R EILE KTGGLV+W G
Sbjct: 187 WARAKKAGVTDEVVEEMRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKG 246
Query: 331 TAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTA 390
+Y+G Y Q N + S +HK + N A D
Sbjct: 247 DIHFVYKGSKY-----QQN-----------AKHSHTFVTNVHKGSLVKQNVRGEADD--- 287
Query: 391 QDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPL 450
A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW PL
Sbjct: 288 -------------AFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPL 334
Query: 451 PVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLA 510
PVDAD+LP +PG++ PFR P GVR TLA +E T L++LAR LP HFALGR+ +LQGLA
Sbjct: 335 PVDADLLPEFIPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQGLA 394
Query: 511 VAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSP 570
A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 395 AAILKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTVILRNKDFVILYRGKDFLPG 454
Query: 571 DVTEALQERERLAKSLQDEEEQARLRA--SAFVLPSIETIEKSGTAGTLKETLDANSRWG 628
V + + +RE Q +EE+ARL+A S ++ + + E+S + GT +E D ++ +
Sbjct: 455 GVAQTVIQREAQVDDEQVKEEEARLKAVDSLQMVGELSSDEES-SVGTFREYKDFHADFV 513
Query: 629 KRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQAD 688
+ + EAE R ++ E KL+ +K+ R+ +AL+K+ S P+E+ AD
Sbjct: 514 HANTEKSNTMIELEAEKYRLEKELKDHEWKLSILNKKIERSNQALAKLRSSWSPSEQSAD 573
Query: 689 PESITDEERFMFRKLGLRMKAFLLLGK 715
E +T+EE+ MFR++G +M +LLG+
Sbjct: 574 RELLTEEEKIMFRRIGRKMDGLVLLGR 600
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 81/373 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L A++ + W+ S I ++ ++ G
Sbjct: 362 TLADEELTYLRKLARPLPTHFALGRNTRLQG--LAAAILKL----WEKSLIAKIAVKVGI 415
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
N ++M L+ TGG VI R+ V LYRG + +P + + + +R +Q
Sbjct: 416 QNTNNEQMAWNLKHLTGGTVILRNKDFVILYRGKDF-LPG-GVAQTVIQRE-------AQ 466
Query: 366 ATDKQIHKQISM--SGNSLSAAADKTAQDPSN---FDSYNNVHATQVNLETAS------- 413
D+Q+ ++ + + +SL + ++ + S+ F Y + HA V+ T
Sbjct: 467 VDDEQVKEEEARLKAVDSLQMVGELSSDEESSVGTFREYKDFHADFVHANTEKSNTMIEL 526
Query: 414 EEQETDFVREVKYED--------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQ 465
E ++ +E+K + ++E+ L + W P AD
Sbjct: 527 EAEKYRLEKELKDHEWKLSILNKKIERSNQALAKLRSSW---SPSEQSAD---------- 573
Query: 466 PPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 525
R L +E +R+ R + LGR G+ + + W+ + K+
Sbjct: 574 ----------RELLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKV 623
Query: 526 ALK----RGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSP---DVTE 574
K R + T + VE TGG L++ K ++ YRGKN+ P +
Sbjct: 624 ITKQNQARQIMYTANLLEVE-----TGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSN 678
Query: 575 ALQERERLAKSLQ 587
L +RE L +SL+
Sbjct: 679 LLTKREALRRSLE 691
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/290 (51%), Positives = 200/290 (68%), Gaps = 11/290 (3%)
Query: 429 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQ 488
E+ LLD +GPR+ DW GC P PVDAD+LPG V GY+ PFR+LP GV+ L+ E T ++
Sbjct: 347 ELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMR 406
Query: 489 RLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTG 548
RLAR PPHFALGRSR+LQGLA AM+KLW KS+IAKIA+KRGV+ T +ERM E++K+LT
Sbjct: 407 RLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTR 466
Query: 549 GTLLSRNKDFLVFYRGKNFLSPDVTEALQERER-LAKSLQDEEEQARLRAS--AFVLPSI 605
G L+SRNK+++VFYR V EAL ER++ + + LQ +E+QAR AS A +
Sbjct: 467 GVLVSRNKEYIVFYR--------VAEALTERQKEITEVLQAKEDQAREMASTRATLTSQA 518
Query: 606 ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 665
++ + AGTL ET+ A+SRW E L RE+ + A L++ LE +L ++K
Sbjct: 519 KSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGKQK 578
Query: 666 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
L RAER L+KV++ L P+E D E IT+EER ++RK+GL M FLLLG+
Sbjct: 579 LRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGR 628
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G W + R S T AE +PE EL+RLRN+ + + ++ AG+TQA+V+ IHEKW+
Sbjct: 228 GIW--RTRKSNTVEAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVD 285
Query: 296 EIVRLKIEGAPALNMKRMHEILE 318
E+V+LK +LNMKR HE+LE
Sbjct: 286 EVVKLKFSEPYSLNMKRTHEVLE 308
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 185/519 (35%), Positives = 276/519 (53%), Gaps = 64/519 (12%)
Query: 204 FSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLR 263
FS+ S L + G FPW++ A + LAELT+PE ELRRL+
Sbjct: 164 FSESSSLEGRDSTSQQG--SFPWQRESSSEAPTPVTRPQPPKLPCLAELTIPELELRRLQ 221
Query: 264 NLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGG 323
+ + + ++ G+T+AVV IH +W+ E+V+++ + +M+
Sbjct: 222 RIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQPKNWWLSSMEN----------- 270
Query: 324 LVIWRSGTAVSLYRGVSYEV---PSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGN 380
WR+G LYRG Y S+ N + Y+R ++ + D+ + S S +
Sbjct: 271 ---WRNG---HLYRGKGYFARVDNSMVANLKKYQRRKINLMEAIKIRDEDEDRDYSQSEH 324
Query: 381 SLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPR 440
A + E + E +Y DE++ LL+ LGPR
Sbjct: 325 G-----------------------------EARRDSEKGNI-EDEYLDEIDALLEELGPR 354
Query: 441 YTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFAL 500
Y DW G P+PVD D+LP VPGY+PP R+LPY + L+ E T L+RL + LPPHF L
Sbjct: 355 YDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNMELTVLRRLVKPLPPHFVL 414
Query: 501 GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLV 560
GR+R LQGLA A++KLW+KS + KI LKRGVQ T ++ M E++++LTGG LLSR+K F+
Sbjct: 415 GRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRDKFFIT 474
Query: 561 FYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKET 620
YRGK+FL V L+ERE + L +E+Q R+ A + +G+L E+
Sbjct: 475 LYRGKDFLPTSVAAVLRERESNMRELLLKEDQVRIPAQI----GDGQNRTTPVSGSLSES 530
Query: 621 LDANSRW----GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 676
++ +W ++ D+ + + V +VR ++LE KLA A K RA+ + K+
Sbjct: 531 MEMRRQWEAQRSEKDDEMDRNSAVVALKVREQ----KRLEAKLAAAISKKRRADLQIVKL 586
Query: 677 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
E SL +E D E+IT+EER+MF+KLGLRM AFLL+G+
Sbjct: 587 ERSLLLSEHPRDRETITEEERYMFKKLGLRMDAFLLIGR 625
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 184/501 (36%), Positives = 275/501 (54%), Gaps = 39/501 (7%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRT---SLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
PW ++E + +V RR + + AE L + L RLR R K AG+
Sbjct: 133 VPWSAARDEHLK---VVLRREKKVREPTRAERELGPALLERLRRAARGMDRWARAKKAGV 189
Query: 281 TQAVVDIIHEKWKT-SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
T VV+ + +W + E+ ++I M R EILE KTGGLV+W G +YRG
Sbjct: 190 TDEVVEDVRSEWSSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGS 249
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
Y ++ Y N + + ++ + + G A + S+ D
Sbjct: 250 DY------VHNMKYSHNFVADIQKVRTPQEKYKSNVELLGKHNGKAKGAFREKDSSID-- 301
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
++T E V+ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 302 ---------IQTYEEP-----VKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPE 347
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+V G++ PFR P GVR TLA +E T L++LAR LP HFALGR+ +LQGLA A++KLWEK
Sbjct: 348 VVLGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEK 407
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S +AKIA+K G++ T +E+M ++K LTGGT++ RNKDF++ YRGK+FL V +++ +
Sbjct: 408 SLVAKIAVKVGIENTNNEQMAWNLKHLTGGTIILRNKDFIILYRGKDFLPAGVKQSVIQH 467
Query: 580 ERLAKSLQDEEEQARLRASAFV-----LPSIETIEKSGTAGTLKETLDANSRWGKRLDDS 634
E + Q +EE+ARL + + LPS+E+ +AGT +E D +
Sbjct: 468 EAQVDAQQVKEEEARLSGTESLQMFAGLPSVES-----SAGTFREYQDFQVNQAHETTIN 522
Query: 635 HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITD 694
+K + EAE R ++ E++L +K+ R+ +AL+K+ S P+E+ AD E +T+
Sbjct: 523 NKAMIELEAEKHRLEKELKDQERRLFILTKKIERSNQALAKLHSSWNPSEQSADKELLTE 582
Query: 695 EERFMFRKLGLRMKAFLLLGK 715
EER +FRK+GL+M +LLG+
Sbjct: 583 EERMIFRKIGLKMDEHVLLGR 603
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 147/368 (39%), Gaps = 73/368 (19%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F T+++G L A++ + W+ S + ++ ++ G
Sbjct: 366 TLADEELTYLRKLARPLPAHFALGRNTKLQG--LAAAILKL----WEKSLVAKIAVKVGI 419
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
N ++M L+ TGG +I R+ + LYRG + +P+ I ++ A V +
Sbjct: 420 ENTNNEQMAWNLKHLTGGTIILRNKDFIILYRGKDF-LPAGVKQSVIQHEAQVDAQQVKE 478
Query: 366 ATDKQIHKQISMSGN---SLSAAADKTAQDPSNFDSY-----NNVHATQVNLETASEEQE 417
++ +SG + A F Y N H T +N + E +
Sbjct: 479 -------EEARLSGTESLQMFAGLPSVESSAGTFREYQDFQVNQAHETTINNKAMIELEA 531
Query: 418 TDFVREVKYEDE----------VEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 467
E + +D+ +E+ L ++ W +P AD
Sbjct: 532 EKHRLEKELKDQERRLFILTKKIERSNQALAKLHSSW---NPSEQSAD------------ 576
Query: 468 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 527
+ L +E +++ + H LGR G+ + + W+ I K+
Sbjct: 577 --------KELLTEEERMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVIT 628
Query: 528 K--RGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSPDVTEA--LQER 579
K + Q+T + ++E TGG L++ K ++ YRGKN+ P+ + + L +R
Sbjct: 629 KQNQSYQITYTSMLLE---VETGGVLIATQKLPHSHAIILYRGKNYRRPEKSPSNLLTKR 685
Query: 580 ERLAKSLQ 587
E L +S++
Sbjct: 686 EALRRSVE 693
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 183/503 (36%), Positives = 275/503 (54%), Gaps = 49/503 (9%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSL---AELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
PW ++E + +V RR +T + AE L EL RLR + R K AG+
Sbjct: 125 VPWAAARDEETK---VVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGI 181
Query: 281 TQAVVDIIHEKW-KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
T VV+ + +W K E+ ++I M R EILE KTGGLV+W G +YRG
Sbjct: 182 TDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGS 241
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
SY ++ KR H+ LS T+ +P++ Y
Sbjct: 242 SY----LENAKR--------------------HRDFVNYNEELSPV---TSNNPTSQGKY 274
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
+ T N +++++ ++ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 275 WSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPE 334
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+VP ++ PFR P GVR LA +E T L++ AR LP HF LGR+ +LQGLA A++KLWEK
Sbjct: 335 VVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEK 394
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD+++ YRGK+FL V E++ ER
Sbjct: 395 SLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIER 454
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
E Q +EE+ARL+ + + + + GT +E D + +R ++ N
Sbjct: 455 ESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHARRTTEN---NF 511
Query: 640 VREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERALSKVEESLKPAERQADPESI 692
+ E ++H +LEK+L E +K+ R+ + L+K+ S P+++ D E +
Sbjct: 512 RIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELL 566
Query: 693 TDEERFMFRKLGLRMKAFLLLGK 715
T+EER +FRK+GL+M +LLG+
Sbjct: 567 TEEERRIFRKIGLKMDEHVLLGR 589
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 63/335 (18%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S I ++ ++ G N ++M L+R TGG VI R+ + +YR
Sbjct: 383 GLAAAILKL----WEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYR 438
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDP--SN 395
G + +P + + + +R S V K+ ++ M+ +SL +++
Sbjct: 439 GKDF-LPG-GVAESVIERE----SQVHDQQAKEEEARLKMA-DSLQMIVGLSSERSYVGT 491
Query: 396 FDSYNNVH------ATQVNLETASEEQETDFVREVKYED--------EVEKLLDGLGPRY 441
F Y + H T+ N E ++ +E+K ++ ++E+ L +
Sbjct: 492 FREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLH 551
Query: 442 TDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALG 501
+ W P D D R L +E +++ + H LG
Sbjct: 552 SSW---SPSKKDGD--------------------RELLTEEERRIFRKIGLKMDEHVLLG 588
Query: 502 RSRQLQGLAVAMIKLWEKSSIAKIALK--RGVQLTTSERMVEDIKKLTGGTLLSRNK--- 556
R +G+ + + W+ + K+ K + Q+T + M+E TGGTL++ +
Sbjct: 589 RRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLE---VETGGTLIAIERFTT 645
Query: 557 -DFLVFYRGKNFLSPD---VTEALQERERLAKSLQ 587
++ YRGKN+ P + L +RE L +S++
Sbjct: 646 SHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIE 680
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L E E R R + + + G+ + V++ IH+ WK E+V++ + A +
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+LE +TGG +I + + A+ LYRG +Y P+
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPT 661
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 183/503 (36%), Positives = 275/503 (54%), Gaps = 49/503 (9%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSL---AELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
PW ++E + +V RR +T + AE L EL RLR + R K AG+
Sbjct: 125 VPWAAARDEETK---VVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGI 181
Query: 281 TQAVVDIIHEKW-KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
T VV+ + +W K E+ ++I M R EILE KTGGLV+W G +YRG
Sbjct: 182 TDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGS 241
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
SY ++ KR H+ LS T+ +P++ Y
Sbjct: 242 SY----LENAKR--------------------HRDFVNYNEELSPV---TSNNPTSQGKY 274
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
+ T N +++++ ++ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 275 WSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPE 334
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+VP ++ PFR P GVR LA +E T L++ AR LP HF LGR+ +LQGLA A++KLWEK
Sbjct: 335 VVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEK 394
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD+++ YRGK+FL V E++ ER
Sbjct: 395 SLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIER 454
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
E Q +EE+ARL+ + + + + GT +E D + +R ++ N
Sbjct: 455 ESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHARRTTEN---NF 511
Query: 640 VREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERALSKVEESLKPAERQADPESI 692
+ E ++H +LEK+L E +K+ R+ + L+K+ S P+++ D E +
Sbjct: 512 RIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELL 566
Query: 693 TDEERFMFRKLGLRMKAFLLLGK 715
T+EER +FRK+GL+M +LLG+
Sbjct: 567 TEEERRIFRKIGLKMDEHVLLGR 589
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 63/335 (18%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S I ++ ++ G N ++M L+R TGG VI R+ + +YR
Sbjct: 383 GLAAAILKL----WEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYR 438
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDP--SN 395
G + +P + + + +R S V K+ ++ M+ +SL +++
Sbjct: 439 GKDF-LPG-GVAESVIERE----SQVHDQQAKEEEARLKMA-DSLQMIVGLSSERSYVGT 491
Query: 396 FDSYNNVH------ATQVNLETASEEQETDFVREVKYED--------EVEKLLDGLGPRY 441
F Y + H T+ N E ++ +E+K ++ ++E+ L +
Sbjct: 492 FREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLH 551
Query: 442 TDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALG 501
+ W P D D R L +E +++ + H LG
Sbjct: 552 SSW---SPSKKDGD--------------------RELLTEEERRIFRKIGLKMDEHVLLG 588
Query: 502 RSRQLQGLAVAMIKLWEKSSIAKIALK--RGVQLTTSERMVEDIKKLTGGTLLSRNK--- 556
R +G+ + + W+ + K+ K + Q+T + M+E TGGTL++ +
Sbjct: 589 RRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLE---VETGGTLIAIERFTT 645
Query: 557 -DFLVFYRGKNFLSPD---VTEALQERERLAKSLQ 587
++ YRGKN+ P + L +RE L +S++
Sbjct: 646 SHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIE 680
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L E E R R + + + G+ + V++ IH+ WK E+V++ + A +
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+LE +TGG +I + + A+ LYRG +Y P+
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPT 661
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 169/446 (37%), Positives = 250/446 (56%), Gaps = 52/446 (11%)
Query: 274 RIKGAGLTQAVVDIIHEKWKT-SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
R K AG+T VV + +W + E+ ++I +M R EILE KTGGLV+W G
Sbjct: 190 RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249
Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQD 392
+YRG Y Q K H ++
Sbjct: 250 HFVYRGSKY-----------------------QQNAKHSHTFLT---------------- 270
Query: 393 PSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
NVH A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW P
Sbjct: 271 --------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTP 322
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP VPG + P+R+ P GVR TLA +E T L++LAR+LP HFALGR+ +LQGL
Sbjct: 323 LPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGL 382
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 383 AAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLP 442
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGK 629
V + + +RE Q +EE+ARL+A L + + + + GT +E ++++
Sbjct: 443 GGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGTFREYQGFHAKFVH 501
Query: 630 RLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADP 689
++ + EAE R ++ E KL+ +K+ R+ +AL+K+ S P+E+ AD
Sbjct: 502 ENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSWSPSEQSADR 561
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGK 715
E +T+EE+ MFR++G +M +LLG+
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGLVLLGR 587
Score = 45.8 bits (107), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 79/371 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L A++ + W+ S I ++ ++ G
Sbjct: 351 TLADEELTYLRKLARLLPTHFALGRNTRLQG--LAAAILKL----WEKSLIAKIAVKIGI 404
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
N ++M L+ TGG VI R+ + LYRG + +P + + + +R +Q
Sbjct: 405 QNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDF-LPG-GVAQTVIQRE-------AQ 455
Query: 366 ATDKQIHKQIS--MSGNSLSAAADKTAQDP-SNFDSYNNVHATQVNLETAS-------EE 415
D+Q+ ++ + + +SL + + + F Y HA V+ T + E
Sbjct: 456 VHDEQVKEEEARLKAVDSLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEA 515
Query: 416 QETDFVREVKYED--------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 467
++ +E+K + ++E+ L ++ W P AD
Sbjct: 516 EKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSW---SPSEQSAD------------ 560
Query: 468 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 527
R L +E +R+ R + LGR G+ + + W+ + K+
Sbjct: 561 --------REHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVIT 612
Query: 528 K----RGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSP---DVTEAL 576
K R + S VE TGG L++ K ++ YRGKN+ P + L
Sbjct: 613 KQNQTRQIMYAASLLEVE-----TGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLL 667
Query: 577 QERERLAKSLQ 587
+RE L +S++
Sbjct: 668 TKREALRRSIE 678
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 180/512 (35%), Positives = 253/512 (49%), Gaps = 114/512 (22%)
Query: 251 ELTLP---ESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPA 307
E+T+P + EL RLR + K K I +GLT++V+ IH +W T+E+V+LK
Sbjct: 100 EVTVPCLEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLV 159
Query: 308 LNMKRMHEILE------------------------------------------RKTGGLV 325
NM H I++ R+TGGLV
Sbjct: 160 QNMNLAHNIVQVSIPSSRIIPYRMVIVLQLVILCFFFHHRITNLVPSGLYLLVRRTGGLV 219
Query: 326 IWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAA 385
IWRSG+ + +YRG SY+ P T+ H+ S G+ S +
Sbjct: 220 IWRSGSVMWVYRGKSYQGP----------------------TNGNQHE--SKGGDEKSES 255
Query: 386 ADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWP 445
Q P N E E ++LD GPR+ DW
Sbjct: 256 VVLNQQQPENM---------------------------TPEEAEFNRMLDDFGPRFVDWW 288
Query: 446 GCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQ 505
G LPVDAD+LP +PGY+ P R+LP + L E T + +LA+ LP HFALGR+R
Sbjct: 289 GTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEHTKMLKLAKALPCHFALGRNRN 348
Query: 506 LQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGK 565
LQGLA A++KLWEKS +AKIA+K GVQ T +E M ++KKLTGGTLL RNK +++ YRGK
Sbjct: 349 LQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELKKLTGGTLLLRNKYYILIYRGK 408
Query: 566 NFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANS 625
+F+ V L ER +E + RA V S E E S AG++ E +A +
Sbjct: 409 DFIPTSVAAILSER----------QENVQCRA---VDVSGED-ETSAQAGSMAEFNEAQA 454
Query: 626 RWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA----RAERKLLRAERALSKVEESLK 681
G+ + E +++EA + L++K+E+K A + K RAE+ L+K++ S+
Sbjct: 455 LCGREISTEECEKMMKEAAEATNVRLMKKIERKPAVIHEHTDTKKSRAEKLLAKIDSSMV 514
Query: 682 PAERQADPESITDEERFMFRKLGLRMKAFLLL 713
P E+ITDEER MFR +GLR+K +L L
Sbjct: 515 PVGPDNRRETITDEERVMFRVVGLRLKVYLQL 546
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 188/517 (36%), Positives = 268/517 (51%), Gaps = 66/517 (12%)
Query: 210 LGLGEEVGSDGEVKF--PWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTF 267
LGL E G G K PWE+ ++ V W +K+ + T AEL L + L LR
Sbjct: 156 LGLIREHGDFGVNKKLKPWEREEKFVY---WRIKKEKAVTK-AELILEKELLEILRTEAS 211
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+ + ++ AG+TQ+VVD I W+ +E+ +K + NM R EI+E KTGGLV+W
Sbjct: 212 KMRKWVKVMKAGVTQSVVDQIRYAWRNNELAMVKFDLPLCRNMDRAREIVELKTGGLVVW 271
Query: 328 RSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAAD 387
++ +YRG +Y L SS D++I S G
Sbjct: 272 TRKDSLVIYRGCNYH---------------LTKSSHVSTMDEKIG---SKDGEEEYIPTS 313
Query: 388 KTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGC 447
D +N + N +E E ++LLDGLGPR+ DW
Sbjct: 314 IFIGDDANTPTINGSL----------------------FERETDRLLDGLGPRFVDWWMR 351
Query: 448 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 507
PLPVDAD+LP +V G+ PP R + R+ L E T L++LA LP HF LGR+R+LQ
Sbjct: 352 KPLPVDADLLPEVVAGFMPPSRF--HYARAKLKDDELTYLRKLAYALPTHFVLGRNRRLQ 409
Query: 508 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 567
GLA A++KLWE+S IAKIA+K G+ T +E+M ++K LTGG LL RNK F++ +RGK+F
Sbjct: 410 GLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANELKHLTGGVLLLRNKFFIILFRGKDF 469
Query: 568 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 627
L V + + +RE K Q EE ARL+A E + K+ GTL E D R+
Sbjct: 470 LPCQVADLVVKRENELKICQLNEEGARLKAIETSFTDDELVVKATKIGTLNEFQDIQVRF 529
Query: 628 ---------GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 678
K ++ KE L RE ++ H L+ K K+ ++ R LSK+
Sbjct: 530 KELAKGYRDSKLQLEAEKEKLERELRIQEHKLLILK---------SKIEKSARELSKLNS 580
Query: 679 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ PA++ AD E +T+EER RK+GL+M++ LLLG+
Sbjct: 581 AWAPADQDADLEMMTEEERECLRKIGLKMRSSLLLGR 617
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 151/366 (41%), Gaps = 53/366 (14%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE- 303
SR A L + EL LR L + + + Q + I + W+ S I ++ ++
Sbjct: 372 SRFHYARAKLKDDELTYLRKLAYALPTHFVLGRNRRLQGLAAAILKLWERSLIAKIAVKW 431
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
G P + ++M L+ TGG+++ R+ + L+RG + +P + + + NEL +
Sbjct: 432 GIPNTDNEQMANELKHLTGGVLLLRNKFFIILFRGKDF-LPCQVADLVVKRENELKICQL 490
Query: 364 SQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHA-----------TQVNLETA 412
++ + + S + + L A K + + ++ +++ LE
Sbjct: 491 NEEGARLKAIETSFTDDELVVKATKIG----TLNEFQDIQVRFKELAKGYRDSKLQLEAE 546
Query: 413 SEEQETDF-VREVK---YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPF 468
E+ E + ++E K + ++EK L + W D DAD+
Sbjct: 547 KEKLERELRIQEHKLLILKSKIEKSARELSKLNSAWAPADQ---DADL------------ 591
Query: 469 RVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK-IAL 527
+ +E L+++ + LGR G+ + + W+ + K I+L
Sbjct: 592 --------EMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISL 643
Query: 528 KRGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSPD--VTEALQERER 581
+R R + ++ TGG L+S +K ++ YRGKN+ P + L +R+
Sbjct: 644 QR--MFAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLNNLLTKRKA 701
Query: 582 LAKSLQ 587
L +SL+
Sbjct: 702 LCRSLE 707
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 177/516 (34%), Positives = 265/516 (51%), Gaps = 101/516 (19%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL LP ELRRL+ + +++ ++ AG+T+ +V+ IHE+W+ +E+V+++ + A+NM
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 311 KRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQ 370
KR HEILERKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + + D+
Sbjct: 198 KRTHEILERKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSDDED 255
Query: 371 IHKQISMSGNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQ------ 416
I S S S +D A+ SN + V A + NL+ S EQ
Sbjct: 256 ADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSAT 315
Query: 417 ---------ETDFVR----------------------------EVKYEDEVEKLLDGLGP 439
T+ R EVK +E +KLLDGLGP
Sbjct: 316 KDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGP 375
Query: 440 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 499
R++DW G DPLPVDAD+LP IVPGY+
Sbjct: 376 RFSDWWGYDPLPVDADLLPAIVPGYR---------------------------------- 401
Query: 500 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 559
RS LQGLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +
Sbjct: 402 --RSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESI 459
Query: 560 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 619
VFYRGK+FL V+ A+++R + S + +++ P + K T
Sbjct: 460 VFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DV 511
Query: 620 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 679
+LD + + K+ D E V + Q +E +L++A + + E+ + ++E S
Sbjct: 512 SLDGHECYEKKHKD---ETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMS 568
Query: 680 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+P+ R E I++EER+M RK+GL+MK+FLLLG+
Sbjct: 569 SEPS-RAETREVISEEERYMLRKVGLKMKSFLLLGR 603
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 465 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 873 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 927
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+ +K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 928 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 968
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 177/516 (34%), Positives = 265/516 (51%), Gaps = 101/516 (19%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL LP ELRRL+ + +++ ++ AG+T+ +V+ IHE+W+ +E+V+++ + A+NM
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 311 KRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQ 370
KR HEILERKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + + D+
Sbjct: 198 KRTHEILERKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSDDED 255
Query: 371 IHKQISMSGNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQ------ 416
I S S S +D A+ SN + V A + NL+ S EQ
Sbjct: 256 ADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSAT 315
Query: 417 ---------ETDFVR----------------------------EVKYEDEVEKLLDGLGP 439
T+ R EVK +E +KLLDGLGP
Sbjct: 316 KDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGP 375
Query: 440 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 499
R++DW G DPLPVDAD+LP IVPGY+
Sbjct: 376 RFSDWWGYDPLPVDADLLPAIVPGYR---------------------------------- 401
Query: 500 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 559
RS LQGLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +
Sbjct: 402 --RSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESI 459
Query: 560 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 619
VFYRGK+FL V+ A+++R + S + +++ P + K T
Sbjct: 460 VFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DV 511
Query: 620 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 679
+LD + + K+ D E V + Q +E +L++A + + E+ + ++E S
Sbjct: 512 SLDGHECYEKKHKD---ETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMS 568
Query: 680 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+P+ R E I++EER+M RK+GL+MK+FLLLG+
Sbjct: 569 SEPS-RAETREVISEEERYMLRKVGLKMKSFLLLGR 603
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 465 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 873 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 927
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG------KNFLSPDVTEALQ 577
+ +K T ++++ ++++ TG L+SR + ++ YRG +N LS + +
Sbjct: 928 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRGWGADVAQNSLSGNNSTEQV 987
Query: 578 ERERLAKSL 586
E+E ++ L
Sbjct: 988 EKEVISPQL 996
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 282/542 (52%), Gaps = 93/542 (17%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ S AEL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E
Sbjct: 36 SAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE 95
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
A+NM+R HEILERKTGGLVIWRSG+ + LYRG +Y P ++R+ + +S
Sbjct: 96 DVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ 155
Query: 364 SQATD------------------------KQIH------KQISMSGNSLSAAADKTAQDP 393
S + D +QIH + I SLS +K P
Sbjct: 156 SNSGDEDETSSQHGSSHEKSSENPVVACAEQIHVGEGNSQTIEYLNQSLS--REKDTNHP 213
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVR--EVKYEDEVEK--------LLDGLGPRYT- 442
+ A + NL+ + VR E + D K L+ G+G +
Sbjct: 214 VSSIKRLVFDADEGNLDIRAGNPNEQHVRLQENTHPDSPNKFGPRDRSSLVAGVGSQNKF 273
Query: 443 --DWPGCDPLPVDAD-MLPGIVP------GYQP-----------------PFRVLPYGVR 476
PG L +AD +L G+ P GY P PFR+LP GV
Sbjct: 274 RLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVP 333
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
L +E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T S
Sbjct: 334 PKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDS 393
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
E + E++K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 394 ELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----- 448
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQ 653
P IE + LK + D + G + ++ E+L + +
Sbjct: 449 ------PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAK 493
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
+E +L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLL
Sbjct: 494 DVETRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLL 552
Query: 714 GK 715
G+
Sbjct: 553 GR 554
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 467 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 525
P R P + L RK+A +++ P ++GR+ + G+A + ++K +A +
Sbjct: 806 PLRAAPLSNQERLVLRKQALQMKKR-----PVLSIGRNNAITGVAKTIKTHFKKHPLAIV 860
Query: 526 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 861 NIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRG 899
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 11/197 (5%)
Query: 243 RSSRTSLAEL--TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
++S S AE+ T+ E E LR + + K + G+ ++ +H WK E+V++
Sbjct: 518 KASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKI 577
Query: 301 KIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRN 356
+ +++ LE ++GG+++ G A+ +YRG +Y+ PS K + +
Sbjct: 578 ICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKR 637
Query: 357 ELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLET-ASEE 415
+ ++ ++ + Q K + + LS D ++ + ++H VN T ++
Sbjct: 638 D----ALKRSLENQRCKSLKVHVLKLSKNIDYLRDQMNSSYYHKDMHDPSVNSVTLQQQD 693
Query: 416 QETDFVREVKYEDEVEK 432
+E V + E EVEK
Sbjct: 694 EEMPEVAPMSSEPEVEK 710
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 282/542 (52%), Gaps = 93/542 (17%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ S AEL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E
Sbjct: 133 SAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE 192
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
A+NM+R HEILERKTGGLVIWRSG+ + LYRG +Y P ++R+ + +S
Sbjct: 193 DVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ 252
Query: 364 SQATD------------------------KQIH------KQISMSGNSLSAAADKTAQDP 393
S + D +QIH + I SLS +K P
Sbjct: 253 SNSGDEDETSSQHGSSHEKSSENPVVACAEQIHVGEGNSQTIEYLNQSLS--REKDTNHP 310
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVR--EVKYEDEVEK--------LLDGLGPR--- 440
+ A + NL+ + VR E + D K L+ G+G +
Sbjct: 311 VSSIKRLVFDADEGNLDIRAGNPNEQHVRLQENTHPDSPNKFGPRDRSSLVAGVGSQNKF 370
Query: 441 YTDWPGCDPLPVDAD-MLPGIVP------GYQP-----------------PFRVLPYGVR 476
PG L +AD +L G+ P GY P PFR+LP GV
Sbjct: 371 RLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVP 430
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
L +E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T S
Sbjct: 431 PKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDS 490
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
E + E++K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 491 ELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----- 545
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQ 653
P IE + LK + D + G + ++ E+L + +
Sbjct: 546 ------PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAK 590
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
+E +L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLL
Sbjct: 591 DVETRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLL 649
Query: 714 GK 715
G+
Sbjct: 650 GR 651
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 467 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 525
P R P + L RK+A +++ P ++GR+ + G+A + ++K +A +
Sbjct: 903 PLRAAPLSNQERLVLRKQALQMKKR-----PVLSIGRNNAITGVAKTIKTHFKKHPLAIV 957
Query: 526 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 958 NIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRG 996
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 11/197 (5%)
Query: 243 RSSRTSLAEL--TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
++S S AE+ T+ E E LR + + K + G+ ++ +H WK E+V++
Sbjct: 615 KASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKI 674
Query: 301 KIEGAPALNMKRMHEILERKTGGLVIW----RSGTAVSLYRGVSYEVPSVQLNKRIYKRN 356
+ +++ LE ++GG+++ G A+ +YRG +Y+ PS K + +
Sbjct: 675 ICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKR 734
Query: 357 ELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLET-ASEE 415
+ ++ ++ + Q K + + LS D ++ + ++H VN T ++
Sbjct: 735 D----ALKRSLENQRCKSLKVHVLKLSKNIDYLRDQMNSSYYHKDMHDPSVNSVTLQQQD 790
Query: 416 QETDFVREVKYEDEVEK 432
+E V + E EVEK
Sbjct: 791 EEMPEVAPMSSEPEVEK 807
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 187/541 (34%), Positives = 281/541 (51%), Gaps = 93/541 (17%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ S AEL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E
Sbjct: 133 SAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE 192
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
A+NM+R HEILERKTGGLVIWRSG+ + LYRG +Y P ++R+ + +S
Sbjct: 193 DVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ 252
Query: 364 SQATD------------------------KQIH------KQISMSGNSLSAAADKTAQDP 393
S + D +QIH + I SLS +K P
Sbjct: 253 SNSGDEDETSSQHGSSHEKSSENPVVACAEQIHVGEGNSQTIEYLNQSLS--REKDTNHP 310
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVR--EVKYEDEVEK--------LLDGLGPR--- 440
+ A + NL+ + VR E + D K L+ G+G +
Sbjct: 311 VSSIKRLVFDADEGNLDIRAGNPNEQHVRLQENTHPDSPNKFGPRDRSSLVAGVGSQNKF 370
Query: 441 YTDWPGCDPLPVDAD-MLPGIVP------GYQP-----------------PFRVLPYGVR 476
PG L +AD +L G+ P GY P PFR+LP GV
Sbjct: 371 RLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVP 430
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
L +E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T S
Sbjct: 431 PKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDS 490
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
E + E++K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 491 ELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----- 545
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQ 653
P IE + LK + D + G + ++ E+L + +
Sbjct: 546 ------PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAK 590
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
+E +L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLL
Sbjct: 591 DVETRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLL 649
Query: 714 G 714
G
Sbjct: 650 G 650
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 187/541 (34%), Positives = 281/541 (51%), Gaps = 93/541 (17%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ S AEL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E
Sbjct: 120 SAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE 179
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
A+NM+R HEILERKTGGLVIWRSG+ + LYRG +Y P ++R+ + +S
Sbjct: 180 DVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ 239
Query: 364 SQATD------------------------KQIH------KQISMSGNSLSAAADKTAQDP 393
S + D +QIH + I SLS +K P
Sbjct: 240 SNSGDEDETSSQHGSSHEKSSENPVVACAEQIHVGEGNSQTIEYLNQSLS--REKDTNHP 297
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVR--EVKYEDEVEK--------LLDGLGPRYT- 442
+ A + NL+ + VR E + D K L+ G+G +
Sbjct: 298 VSSIKRLVFDADEGNLDIRAGNPNEQHVRLQENTHPDSPNKFGPRDRSSLVAGVGSQNKF 357
Query: 443 --DWPGCDPLPVDAD-MLPGIVP------GYQP-----------------PFRVLPYGVR 476
PG L +AD +L G+ P GY P PFR+LP GV
Sbjct: 358 RLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVP 417
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
L +E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T S
Sbjct: 418 PKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDS 477
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
E + E++K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 478 ELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----- 532
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQ 653
P IE + LK + D + G + ++ E+L + +
Sbjct: 533 ------PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAK 577
Query: 654 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 713
+E +L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLL
Sbjct: 578 DVETRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLL 636
Query: 714 G 714
G
Sbjct: 637 G 637
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 185/533 (34%), Positives = 278/533 (52%), Gaps = 86/533 (16%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E A+NM
Sbjct: 142 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 201
Query: 311 KRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD-- 368
+R HEILERKTGGLVIWRSG+ + LYRG +Y+ P ++R+ + +S +S + D
Sbjct: 202 RRTHEILERKTGGLVIWRSGSTIILYRGTNYKYPYFHYSERVDSFLDKESSDLSSSGDED 261
Query: 369 -------------------------KQIH------KQISMSGNSLSAAADKTAQDPSN-- 395
+QI+ + + SLS D T S
Sbjct: 262 EEDETSSQHDSSHEESSENPVVACTEQINAGEGKSQTVGYLNQSLSREKDTTHPISSTKR 321
Query: 396 --FDSYN---NVHATQVNLETASEEQETDFVREVKY-EDEVEKLLDGLGPR---YTDWPG 446
FD+ ++ N + A ++ T R K+ E L+ G+G PG
Sbjct: 322 LVFDTNEGNLDIRTGAPNEQHARLQENTRADRPSKFGPRERSSLVAGVGSPNKFRLQLPG 381
Query: 447 CDPLPVDAD-MLPGIVP------GYQP-----------------PFRVLPYGVRSTLARK 482
L +AD +L G+ P GY P PFR+LP GV L +
Sbjct: 382 EVKLAEEADKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 441
Query: 483 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 542
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 442 EMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 501
Query: 543 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 602
IK LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 502 IKDLTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKPK----------- 550
Query: 603 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 662
P IE + LK + D + + + V E + + + +E +L++A
Sbjct: 551 PDIEENMPTQDDSVLKVSNDVS------VHIREEGTSVTEVRAKSLNTVAKNVEARLSQA 604
Query: 663 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ RAE+ L ++E++ P + E+I+++ER+M RK+GL+MK FLLLG+
Sbjct: 605 IAEKERAEKLLEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGR 656
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Query: 243 RSSRTSLAEL--TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
++S S AE+ T+ E E LR + + K + G+ ++ +H WK E+V++
Sbjct: 620 KASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKI 679
Query: 301 KIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKRIYKRN 356
+ +++ LE ++GG+++ G A+ +YRG +Y+ PS K + +
Sbjct: 680 ICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYQRPSKLRPKTLLSKR 739
Query: 357 ELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQ 416
+ ++ ++ + Q K + + LS D ++ + ++H VN T +
Sbjct: 740 D----ALKRSVENQRCKSLKVHVLKLSKNIDYLKDQMNSSYYHKDMHDPSVNSGTLQQHD 795
Query: 417 ETDF 420
E +
Sbjct: 796 EVNI 799
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 186/539 (34%), Positives = 279/539 (51%), Gaps = 87/539 (16%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ S AEL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E
Sbjct: 126 SAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE 185
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSV 363
A+NM+R HEILERKTGGLVIWRSG+ + LYRG +Y P ++R+ + +S
Sbjct: 186 DVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ 245
Query: 364 SQATD------------------------KQIH------KQISMSGNSLSAAADKTAQDP 393
S + D +QIH + I SLS +K P
Sbjct: 246 SNSGDEDETSSQHGSSHEKSSENPVVACAEQIHVGEGNSQTIEYLNQSLS--REKDTNHP 303
Query: 394 SNFDSYNNVHATQVNLETASEEQETDFVR--EVKYEDEVEK--------LLDGLGPR--- 440
+ A + NL+ + VR E + D K L+ G+G +
Sbjct: 304 VSSIKRLVFDADEGNLDIRAGNPNEQHVRLQENTHPDSPNKFGPRDRSSLVAGVGSQNKF 363
Query: 441 YTDWPGCDPLPVDAD-MLPGIVP------GYQP-----------------PFRVLPYGVR 476
PG L +AD +L G+ P GY P PFR+LP GV
Sbjct: 364 RLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVP 423
Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
L +E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T S
Sbjct: 424 PKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDS 483
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
E + E++K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 484 ELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----- 538
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLE 656
P IE + LK + D + + + V E + + +E
Sbjct: 539 ------PGIEESMPTQNDSVLKVSSDVS------VHVREEGTSVTENRAGSLNTVAKDVE 586
Query: 657 KKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLLG+
Sbjct: 587 TRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGR 644
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 234/413 (56%), Gaps = 42/413 (10%)
Query: 310 MKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDK 369
M R EILE KTGGLV+W G +YRG SY + Q
Sbjct: 1 MDRAREILEIKTGGLVVWTRGGIHFVYRGSSYLENAKQ---------------------- 38
Query: 370 QIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDE 429
H+ LS T+ +P++ Y + T N +++++ ++ YE E
Sbjct: 39 --HRDFVNYNEELSPV---TSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYERE 93
Query: 430 VEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQR 489
V +LLD LGPR+ DW PLPVDAD+LP +VP ++ PFR P GVR TLA +E T L++
Sbjct: 94 VNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPTLADEELTYLRK 153
Query: 490 LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGG 549
AR LP HF LGR+ +LQGLA A++KLWEKS IAK+A+K G+Q + E+M ++K+LTGG
Sbjct: 154 HARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNSNHEQMARNLKRLTGG 213
Query: 550 TLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIE 609
T++ RNKD+++ YRGK+FL V E++ E+E Q +EE+ARL+ + + +
Sbjct: 214 TVILRNKDYIIIYRGKDFLPGGVAESVIEQESQVHDQQAKEEEARLKMADSLQMIVGLSS 273
Query: 610 KSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE------ 663
+ GT +E D + +R ++ N + E ++H +LEK+L E
Sbjct: 274 ERSYVGTFREYQDFHDSHARRTTEN---NFRIQLEAKKH-----RLEKELKDQEWRLSML 325
Query: 664 -RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+K+ R+ + L+K+ S P+++ D E +T+EER +FRK+GL+M +LLG+
Sbjct: 326 TKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGR 378
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 139/341 (40%), Gaps = 69/341 (20%)
Query: 276 KGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVS 334
K GL A++ + W+ S I ++ ++ G N ++M L+R TGG VI R+ +
Sbjct: 169 KLQGLAAAILKL----WEKSLIAKVAVKVGIQNSNHEQMARNLKRLTGGTVILRNKDYII 224
Query: 335 LYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQ---ISMSGNSLSAAADKTAQ 391
+YRG + V E SQ D+Q ++ + M+ +SL +++
Sbjct: 225 IYRGKDFLPGGVA---------ESVIEQESQVHDQQAKEEEARLKMA-DSLQMIVGLSSE 274
Query: 392 DP--SNFDSYNNVH------ATQVNLETASEEQETDFVREVKYED--------EVEKLLD 435
F Y + H T+ N E ++ +E+K ++ ++E+
Sbjct: 275 RSYVGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQ 334
Query: 436 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 495
L ++ W P D D R L +E +++ +
Sbjct: 335 VLAKLHSSW---SPSKKDGD--------------------RELLTEEERRIFRKIGLKMD 371
Query: 496 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV--QLTTSERMVEDIKKLTGGTLLS 553
H LGR +G+ + + W+ + K+ K+ Q+T + M+E TGGTL++
Sbjct: 372 EHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLE---VETGGTLIA 428
Query: 554 RNK----DFLVFYRGKNFLSPDV---TEALQERERLAKSLQ 587
+ ++ YRGKN+ P + L +RE L +S++
Sbjct: 429 IERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIE 469
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L E E R R + + + G+ + V++ IH+ WK E+V++ + A +
Sbjct: 355 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYT 414
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+LE +TGG +I + + A+ LYRG +Y P+
Sbjct: 415 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPT 450
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 226/399 (56%), Gaps = 39/399 (9%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
AG+T +VD IHEKW E+V+ K + + NMKR ++ILE KTGG+V+WR G+++ LYR
Sbjct: 14 AGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGSSIVLYR 73
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFD 397
G+SY++P V+ ++Y NE ++V + D + SG+S+ + +F
Sbjct: 74 GMSYKLPCVESYTKVYNANE---NAVDNSVDVR-------SGSSVEVSVKVMVGPAESF- 122
Query: 398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 457
N ++A ++ E ++ LLD LGPR+ DW G +PL VDAD L
Sbjct: 123 ----------NRDSAEYLKDMSEEEESMESIKLNLLLDELGPRFKDWTGREPLTVDADQL 172
Query: 458 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 517
P +VPGY+ PFR+LPYGV+ L+ KE T ++R+AR HFAL GLA A++KLW
Sbjct: 173 PVVVPGYKTPFRLLPYGVKPCLSNKEMTVMRRIARRTALHFAL-------GLARAIVKLW 225
Query: 518 EKSSIAKIALKRGVQLTTSERMVEDIKK-LTGGTLLSRNK----DFLVFYRGKNFLSP-- 570
E S++AKIA++ GV T+++RM E++K L L+ + K L+ + G +F
Sbjct: 226 ETSAVAKIAIRHGVPYTSNDRMAEELKVFLINFCLMHQLKHEHIHSLIIFMGVSFYGAMT 285
Query: 571 ----DVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSR 626
VT+ L ER++L QDEEE+AR AS+ L + ++ + AGTL ET A +
Sbjct: 286 YCLLSVTKTLTERQKLTVLQQDEEEKARQNASSITLSNSKSSQMQLLAGTLAETRAATAN 345
Query: 627 WGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 665
WG + ++RE+ + R + L++ E KLA K
Sbjct: 346 WGHQPSKQEVGKMIRESTLDRLSSLIRNHESKLALVSYK 384
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/403 (37%), Positives = 232/403 (57%), Gaps = 21/403 (5%)
Query: 320 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 379
KTGGLV+W A+ +YRG +Y++ S K +P+ + + +++ G
Sbjct: 299 KTGGLVVWSKKDALVVYRGCNYKLTSKGSTK--IDTGYIPSRKTNSYEMNGV--KLATIG 354
Query: 380 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 439
+ A +D++ S S+N H + +L T + YE E ++LLDGLGP
Sbjct: 355 DLYRAESDRST---SELPSWNADH--KHSLSTDIHDMNYQPANGSLYERECDRLLDGLGP 409
Query: 440 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 499
R+ DW PLPVDAD+LP +VPG++PP R+ P + L E T +R++ LP HF
Sbjct: 410 RFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDGELTYFRRISHPLPTHFV 469
Query: 500 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 559
LGR+R LQGLA A++KLW KS IAKIA+K GVQ T +E M ++K+LTGG LL RNK ++
Sbjct: 470 LGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANELKRLTGGVLLLRNKFYI 529
Query: 560 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA-------SAFVLPSIETIEKSG 612
+ YRGK+FL V + ++ RE KS Q +EE AR++A F LP + +
Sbjct: 530 LLYRGKDFLPRRVADLVERRELELKSCQLDEEVARMKAIQAFSSIDEFPLP-----QGTS 584
Query: 613 TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 672
T+GTL E + ++ + + + ++ EAE+ R +++ ++K +K+ R+
Sbjct: 585 TSGTLTEFRNIQNKLDEMKEVNVDLSIPLEAEIYRLEKELKEQQRKAFILNKKIERSTME 644
Query: 673 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
LSK+ + KP+ D E +TDEER FRK+GL+M++ L+LGK
Sbjct: 645 LSKLNAAWKPSGEDIDLEIMTDEERECFRKMGLKMRSCLVLGK 687
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 223 KFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQ 282
+ PWE R E+V +L ++ + A+LTL + L+RLR+ + ++K AG+TQ
Sbjct: 139 RMPWE-RDEKVD---FLKVKKEKIVTAADLTLDKVLLQRLRSEAAIMRIWVKVKKAGVTQ 194
Query: 283 AVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILE 318
VV+ I W+T+E+ +K + NM R EI+E
Sbjct: 195 DVVNQIKRTWRTNELAMVKFDIPLCQNMDRAREIVE 230
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 146/360 (40%), Gaps = 76/360 (21%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W S I ++ I+ G + + M L+R TGG+++ R+ + LYR
Sbjct: 478 GLAAAILKL----WHKSHIAKIAIKYGVQNTDNETMANELKRLTGGVLLLRNKFYILLYR 533
Query: 338 GVSY--------------EVPSVQLNKRIYKRNELPA-SSVSQATDKQIHKQISMSGNSL 382
G + E+ S QL++ + + + A SS+ + Q G S
Sbjct: 534 GKDFLPRRVADLVERRELELKSCQLDEEVARMKAIQAFSSIDEFPLPQ--------GTST 585
Query: 383 SAAADKTAQDPSNFDSYNNVHA-TQVNLET--------ASEEQETDFVREVKYED---EV 430
S + + D V+ + LE E+Q F+ K E E+
Sbjct: 586 SGTLTEFRNIQNKLDEMKEVNVDLSIPLEAEIYRLEKELKEQQRKAFILNKKIERSTMEL 645
Query: 431 EKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRL 490
KL P D +D +++ + FR + +RS L +A +L
Sbjct: 646 SKLNAAWKPSGED--------IDLEIM---TDEERECFRKMGLKMRSCLVLGKAISLHST 694
Query: 491 ARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK-IALKRGVQ--LTTSERMVEDIKKLT 547
+ GR G+ + + W+ +AK I ++R + + TS+ + ++ +
Sbjct: 695 T-------SAGRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFL----ERES 743
Query: 548 GGTLLSRNK----DFLVFYRGKNFLSPDVTEA---LQERERLAKSLQDEEEQARLRASAF 600
GG L+S ++ ++ YRGKN+ P A L +R+ L +SL E R+ S F
Sbjct: 744 GGILVSVDQLKEGYAIIIYRGKNYSRPSEKIAKNLLTKRKALRRSL----EMQRIGVSDF 799
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 182/527 (34%), Positives = 271/527 (51%), Gaps = 102/527 (19%)
Query: 214 EEVGSDG-----EVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQ 268
+E+ +G E K PW R+E V G W +K+ S AEL+L + L RLR +
Sbjct: 102 QEISENGVLGFREKKLPWV-REERV--GNWRMKKEKV-VSKAELSLDKELLERLRGEAAK 157
Query: 269 TKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWR 328
++ ++K AG+TQ+VVD I W+TSE+ +K NM R +I+E TGGLV+W
Sbjct: 158 MRTWVKVKKAGVTQSVVDEIRLTWRTSELAMIKFYMPLCRNMNRARDIVE--TGGLVVWT 215
Query: 329 SGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADK 388
+YRG +Y+ +K+N +++ + + Q
Sbjct: 216 RKDIHVVYRGCNYQ----------WKKN-FNTATIEENLNTQ------------------ 246
Query: 389 TAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCD 448
P N + E+ETD +LLDGLGPR+ DW
Sbjct: 247 ----PINGSLF---------------ERETD------------RLLDGLGPRFVDWWMRK 275
Query: 449 PLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQG 508
PLPVDAD+LP +V G++ P R+ P +RS L E T L++LA+ LP HF LGR+R+LQG
Sbjct: 276 PLPVDADLLPEVVKGFRSPSRLCPPRMRSKLKDDELTYLRKLAQSLPTHFVLGRNRRLQG 335
Query: 509 LAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK------------KLTGGTLLSRNK 556
LA A++KLWEK+ IAKIA+K GV T +E+M +++K LTGG LL RNK
Sbjct: 336 LAAAILKLWEKTIIAKIAVKWGVPNTNNEQMADELKAKIFLMLMLYTQSLTGGVLLLRNK 395
Query: 557 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA-SAFVLPSIETIEKSGTAG 615
F++ YRGK+FL V + +RE + Q EE AR++A +P T + G
Sbjct: 396 FFIILYRGKDFLPGQVANVIVDREIALRKCQTNEEGARMKAIETSYMPGGPT--NTSRCG 453
Query: 616 TLKETLDANSRWGKRLD-------DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLR 668
TL E + ++ K +++KE L E E+R Y ++ L+ K+ + +
Sbjct: 454 TLYEFQEFQIKFQKTAKGDSEIQLEAYKEKL--ERELRNQEYRLRILKSKIEKPAKD--- 508
Query: 669 AERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
LSK+ + P+ R AD +T+EER FRK+GL+++ L+LG+
Sbjct: 509 ----LSKLNSAWVPSPRDADQGIMTEEERECFRKIGLKLRGSLVLGR 551
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 193/293 (65%), Gaps = 19/293 (6%)
Query: 423 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 482
EVK DE +KLLDGLGPR++ W G DPLPVDAD+LP IVPG++ PFR+LP GV S L +
Sbjct: 386 EVKVADEGDKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGFRRPFRLLPSGVPSKLTDR 445
Query: 483 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 542
E T L+RLAR LP H+ALGRS LQGLAV+MIKLWE+ +AKIA+KRG SE + E+
Sbjct: 446 EMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRGAYCIDSELVSEE 505
Query: 543 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 602
+K LTGGTLLSR+ +VFYRGK+FLSP V+ A+++R + + S + +
Sbjct: 506 LKGLTGGTLLSRDNKSIVFYRGKDFLSPAVSLAIEKRRKHSNS-----------TTGKLK 554
Query: 603 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 662
P E + A LK T DA+ + H+E E E + + Q +E +L++A
Sbjct: 555 PETEESTSTQDASELKMTSDASVNG----HECHEEK--NEGETSLNT-VAQNVEIRLSQA 607
Query: 663 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ +AE+ L ++E++ +P++ + E I+DEER+M RK+GL+MK FLLLG+
Sbjct: 608 IVEKEKAEKLLEELEKASQPSKAETR-EHISDEERYMLRKIGLQMKPFLLLGR 659
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 248 SLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPA 307
S AELTLP ELRRL+ + + + + ++ G+T+ +V+ IHE+W+ E+V+++ + A
Sbjct: 134 SAAELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSA 193
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKR-NELPASSVSQA 366
+NM+R HEILERKTGGLVIWRSG+ + LYRG +Y+ P K + +L +SV Q+
Sbjct: 194 MNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYKYPYFHDQKSNSEDGKDLGIASVQQS 253
Query: 367 TDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFV 421
+ ++ + A+ D T ++ DS+ V+ Q + A E++ D V
Sbjct: 254 SSEEDAEN--------HASHDSTLEEDEEDDSFGIVYGEQRTI--AEEDKNHDVV 298
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 467 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 525
PFR P R L RK+A +++ P A+GR+ + G+A + ++K +A +
Sbjct: 917 PFRTAPLSNRERLMLRKQALKMKKR-----PVLAIGRNNVITGVAKTIQTHFKKHPLAIV 971
Query: 526 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG-------------------KN 566
+K T ++++ ++++ TG L+SR + ++ YRG K
Sbjct: 972 NIKNRADGTPVQQLISELERATGSVLVSREPNKVILYRGWGAEVTQKSSKENSTNEVEKE 1031
Query: 567 FLSPDVTEALQERERLAKSLQDEEEQ 592
+SP + EA+ RL L +E Q
Sbjct: 1032 VISPQLLEAI----RLECGLHSDESQ 1053
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 143/346 (41%), Gaps = 50/346 (14%)
Query: 259 LRRL-RNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEI 316
LRRL R L + GL +++ + W+ E+ ++ I+ GA ++ + + E
Sbjct: 450 LRRLARPLPYHYALGRSSNLQGLAVSMIKL----WERCEVAKIAIKRGAYCIDSELVSEE 505
Query: 317 LERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 376
L+ TGG ++ R ++ YRG + P+V L I KR + S +T ++ +
Sbjct: 506 LKGLTGGTLLSRDNKSIVFYRGKDFLSPAVSLA--IEKRRKH-----SNSTTGKLKPETE 558
Query: 377 MSGNSLSAAADKTAQDPS--NFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLL 434
S ++ A+ K D S + + + + +L T ++ E + + +++ EKLL
Sbjct: 559 ESTSTQDASELKMTSDASVNGHECHEEKNEGETSLNTVAQNVEIRLSQAIVEKEKAEKLL 618
Query: 435 DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 494
+ L P A+ R ++ +E L+++ +
Sbjct: 619 EELEKASQ--------PSKAE-------------------TREHISDEERYMLRKIGLQM 651
Query: 495 PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR 554
P LGR G M W+ + KI K + E ++ +GG L++
Sbjct: 652 KPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEH-SMKDVEYAARTLESQSGGILVAV 710
Query: 555 NK----DFLVFYRGKNFLSPDVTEA---LQERERLAKSLQDEEEQA 593
+ ++ YRGKN+ P L +R+ L +S++ + +++
Sbjct: 711 ERVSKGHAIIMYRGKNYHRPSTLRPKSLLNKRDALKRSVEYQRQKS 756
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 216 VGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAEL--TLPESELRRLRNLTFQTKSKT 273
V + E++ ++E AE ++S+ S AE + + E LR + Q K
Sbjct: 596 VAQNVEIRLSQAIVEKEKAEKLLEELEKASQPSKAETREHISDEERYMLRKIGLQMKPFL 655
Query: 274 RIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVI----WRS 329
+ G+ ++ +H WK E+V++ + +++ LE ++GG+++
Sbjct: 656 LLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSK 715
Query: 330 GTAVSLYRGVSYEVPSV-----QLNKR 351
G A+ +YRG +Y PS LNKR
Sbjct: 716 GHAIIMYRGKNYHRPSTLRPKSLLNKR 742
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 172/496 (34%), Positives = 251/496 (50%), Gaps = 78/496 (15%)
Query: 223 KFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQ 282
K PW+ R+EE R + K R T AEL L E L RLR + + ++ AG+T+
Sbjct: 148 KMPWD-REEERFIMRRMKKERVPTT--AELILDEGLLNRLRREASKMRKWVNVRKAGVTE 204
Query: 283 AVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
VV+ I WK E+ ++ + NM+R EI+E KTGGLV+ + +YRG
Sbjct: 205 TVVNEIRLIWKLKELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG---- 260
Query: 343 VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 402
G S S+ ++ QD + Y
Sbjct: 261 ------------------------------------GPSYSSEETRSGQDEISSSLY--- 281
Query: 403 HATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVP 462
E+E D +LLDGLGPRY DW P PVDAD+LP +V
Sbjct: 282 ------------EREAD------------RLLDGLGPRYLDWWMRRPFPVDADLLPQVVN 317
Query: 463 GYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSI 522
GY+ P R P R+ L+ +E T L+ +A+ LP HF LGR+ LQGLA A++KLWEK I
Sbjct: 318 GYRTPSRRCPPNTRAKLSDEELTYLRNIAQALPFHFVLGRNHGLQGLASAIVKLWEKCII 377
Query: 523 AKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERL 582
AKIA+K G T +E M +++K LTGG L+ RNK ++ YRGK+FLS +VT+ + +RERL
Sbjct: 378 AKIAIKWGALNTNNEEMADELKHLTGGVLILRNKYLIILYRGKDFLSDEVTDLVDDRERL 437
Query: 583 AKSLQDEEEQARLRASAFVLPSI---ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
+ Q EE R +L + + ++++ +GTL E + ++G + NL
Sbjct: 438 LRGYQHFEETKR-EGDIEILEVVTDGKQLKETSKSGTLLEFQELQRKFG----EMETRNL 492
Query: 640 VREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFM 699
EAE R ++ E KL+ + K+ ++ L K+ KP+ER D E T+EER
Sbjct: 493 ETEAEKARLEKELKSQEHKLSILKSKIEKSTMELFKLNSLWKPSERDDDIEIFTNEEREC 552
Query: 700 FRKLGLRMKAFLLLGK 715
R++GL+M + L+LG+
Sbjct: 553 LRRIGLKMSSSLVLGR 568
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 185/290 (63%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE E ++LLDGLGPR+ DW PLPVDAD+LP ++PG++PPFR+ P RS L E T
Sbjct: 70 YEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELT 129
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 545
L++LA LP HF LGR+R+LQGLA A++KLWEKS I KIA+K G+ T +E+M ++K
Sbjct: 130 YLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKC 189
Query: 546 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 605
LTGG LL RNK F++ YRGK+FL V + ERE K Q EE ARL+A +
Sbjct: 190 LTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTD 249
Query: 606 ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 665
+ + + T GTL E + + + D + + + EAE R ++K E+ L +RK
Sbjct: 250 KPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRK 309
Query: 666 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ R+ + L+K+ + +PA+ AD E IT+EER FRK+G +M + LLLG+
Sbjct: 310 IERSAKVLAKLNSAWRPADHDADKEMITEEERECFRKIGQKMDSSLLLGR 359
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 73/355 (20%), Positives = 143/355 (40%), Gaps = 48/355 (13%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKR 312
L + EL LR L + + + Q + I + W+ S IV++ I+ G P ++
Sbjct: 123 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 182
Query: 313 MHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ--ATDKQ 370
M L+ TGG+++ R+ + LYRG + +P N + + E + + A K
Sbjct: 183 MANELKCLTGGVLLLRNKFFIILYRGKDF-LPCRVANLIVEREMEFKGCQIREEDARLKA 241
Query: 371 IHKQISMSGNSLSAAADKTAQDPSNFDS-YNNVHATQVNLETASEEQETDFVREVKYED- 428
I + + T + N ++ + + +E E ++ +E+K ++
Sbjct: 242 IETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELEAEKERLEKELKKQER 301
Query: 429 -------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLAR 481
++E+ L + W D DAD + +
Sbjct: 302 NLFILKRKIERSAKVLAKLNSAWRPADH---DAD--------------------KEMITE 338
Query: 482 KEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK-IALKRGV-QLTTSERM 539
+E +++ + + LGR G+ + + W+ I K I ++R Q+ + ++
Sbjct: 339 EERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKL 398
Query: 540 VEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSPDVT---EALQERERLAKSLQ 587
+E +GG L+S +K ++ YRGKN+ P L +RE L +SL+
Sbjct: 399 LES---ESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLE 450
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 187/293 (63%), Gaps = 15/293 (5%)
Query: 423 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 482
EVK E +KLLDGLGPR+++W G DPLPVDAD+LP IVPG++ PFR+LP GV L +
Sbjct: 396 EVKLAKEDDKLLDGLGPRFSEWWGYDPLPVDADLLPAIVPGFRRPFRLLPSGVPPKLTDR 455
Query: 483 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 542
E T L+RLAR LP H+ALGRS LQGLA ++IKLWE+ +AKIA+KRG SE + E+
Sbjct: 456 EMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRGPYCIDSELVSEE 515
Query: 543 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 602
+K LTGGTLLSR+ + +V YRGK+FL V+ A+++R + S+ ++ +
Sbjct: 516 LKGLTGGTLLSRDNESIVLYRGKDFLPQAVSLAIEKRRKHDNSMINKPK----------- 564
Query: 603 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 662
P IE + A LK DA S G + E V E + Q +E +L++A
Sbjct: 565 PEIEESIPTQDASELKIANDA-SVHGHECHEG--ETSVSEYRTESLNTVAQNMETRLSQA 621
Query: 663 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+ +AE+ L ++E++ + ++ + E I++EER+M RK+GL+MK FLLLG+
Sbjct: 622 LTEKEKAEKLLEELEKASRSSKAETR-EVISEEERYMLRKVGLQMKPFLLLGR 673
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 71/94 (75%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
ELTLP ELRRL+ + + + + ++ G+T+ +V+ IHE+W+ +E+V+++ + A+NM
Sbjct: 139 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNM 198
Query: 311 KRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVP 344
+R HE+LERKTGGLVIWRSG+ + LYRG +Y+ P
Sbjct: 199 RRTHEVLERKTGGLVIWRSGSTIILYRGTNYKYP 232
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 130/325 (40%), Gaps = 53/325 (16%)
Query: 259 LRRL-RNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAP-ALNMKRMHEI 316
LRRL R L + GL +++ + W+ E+ ++ ++ P ++ + + E
Sbjct: 460 LRRLARPLPYHYALGRSSNLQGLAASIIKL----WERCEVAKIAMKRGPYCIDSELVSEE 515
Query: 317 LERKTGGLVIWRSGTAVSLYRGVSY--EVPSVQLNKRIYKRNEL---PASSVSQATDKQI 371
L+ TGG ++ R ++ LYRG + + S+ + KR N + P + ++ Q
Sbjct: 516 LKGLTGGTLLSRDNESIVLYRGKDFLPQAVSLAIEKRRKHDNSMINKPKPEIEESIPTQD 575
Query: 372 HKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVE 431
++ ++ N S + + ++ Y +L T ++ ET + + +++ E
Sbjct: 576 ASELKIA-NDASVHGHECHEGETSVSEYRTE-----SLNTVAQNMETRLSQALTEKEKAE 629
Query: 432 KLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLA 491
KLL+ L + R R ++ +E L+++
Sbjct: 630 KLLEEL---------------------------EKASRSSKAETREVISEEERYMLRKVG 662
Query: 492 RVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQ--LTTSERMVEDIKKLTGG 549
+ P LGR G M W+ + KI K +T + R +E +GG
Sbjct: 663 LQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLE---AESGG 719
Query: 550 TLLSRNK----DFLVFYRGKNFLSP 570
L++ + ++ YRGKN+ P
Sbjct: 720 ILVAVERVSKGHAIIMYRGKNYQRP 744
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 467 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 525
P + P R L RK+A +++ P A+GR+ + G+A + ++K +A +
Sbjct: 934 PSKAAPLSNRERLVLRKQALQMKKR-----PVLAIGRNNVITGVAKTIRTHFKKHPLAVV 988
Query: 526 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 989 NIKNRADGTPVQQLISELEEATGSVLVSREPNKVILYRG 1027
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 243 RSSRTSLAEL--TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
++SR+S AE + E E LR + Q K + G+ ++ +H WK E+V++
Sbjct: 637 KASRSSKAETREVISEEERYMLRKVGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKI 696
Query: 301 KIEGAPALNMKRMHEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+ ++ LE ++GG+++ G A+ +YRG +Y+ PS
Sbjct: 697 ICKEHSMEDVTYAARTLEAESGGILVAVERVSKGHAIIMYRGKNYQRPS 745
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 226/459 (49%), Gaps = 101/459 (22%)
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQAT 367
+NMKR HEILERKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + +
Sbjct: 1 MNMKRTHEILERKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSD 58
Query: 368 DKQIHKQISMSGNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE-- 417
D+ I S S S +D A+ SN + V A + NL+ S EQ
Sbjct: 59 DEDADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSIN 118
Query: 418 -------------TDFVR----------------------------EVKYEDEVEKLLDG 436
T+ R EVK +E +KLLDG
Sbjct: 119 SATKDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDG 178
Query: 437 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 496
LGPR++DW G DPLPVDAD+LP IVPGY+
Sbjct: 179 LGPRFSDWWGYDPLPVDADLLPAIVPGYR------------------------------- 207
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
RS LQGLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+
Sbjct: 208 -----RSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDN 262
Query: 557 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 616
+ +VFYRGK+FL V+ A+++R + S + +++ P + K T
Sbjct: 263 ESIVFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT--- 315
Query: 617 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 676
+LD + + K+ D E V + Q +E +L++A + + E+ + ++
Sbjct: 316 -DVSLDGHECYEKKHKD---ETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEEL 371
Query: 677 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
E S +P+ R E I++EER+M RK+GL+MK+FLLLG+
Sbjct: 372 EMSSEPS-RAETREVISEEERYMLRKVGLKMKSFLLLGR 409
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 465 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 679 QLPSAAAPLSNRERLMLRKQALKMKK-----RPVLAVGRNNVITGVAKAIKTHFKKHPLA 733
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
+ +K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 734 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 774
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 226/459 (49%), Gaps = 101/459 (22%)
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQAT 367
+NMKR HEILERKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + +
Sbjct: 1 MNMKRTHEILERKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSD 58
Query: 368 DKQIHKQISMSGNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE-- 417
D+ I S S S +D A+ SN + V A + NL+ S EQ
Sbjct: 59 DEDADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSIN 118
Query: 418 -------------TDFVR----------------------------EVKYEDEVEKLLDG 436
T+ R EVK +E +KLLDG
Sbjct: 119 SATKDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDG 178
Query: 437 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 496
LGPR++DW G DPLPVDAD+LP IVPGY+
Sbjct: 179 LGPRFSDWWGYDPLPVDADLLPAIVPGYR------------------------------- 207
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
RS LQGLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+
Sbjct: 208 -----RSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDN 262
Query: 557 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 616
+ +VFYRGK+FL V+ A+++R + S + +++ P + K T
Sbjct: 263 ESIVFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT--- 315
Query: 617 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 676
+LD + + K+ D E V + Q +E +L++A + + E+ + ++
Sbjct: 316 -DVSLDGHECYEKKHKD---ETAVSDNRAESLNVFTQNVEARLSQAIAEKEKTEKLIEEL 371
Query: 677 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
E S +P+ R E I++EER+M RK+GL+MK+FLLLG+
Sbjct: 372 EMSSEPS-RAETREVISEEERYMLRKVGLKMKSFLLLGR 409
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 465 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 679 QLPSAAAPLSNRERLMLRKQALKMKK-----RPVLAVGRNNVITGVAKAIKTHFKKHPLA 733
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG------KNFLSPDVTEALQ 577
+ +K T ++++ ++++ TG L+SR + ++ YRG +N LS + +
Sbjct: 734 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRGWGADVAQNSLSGNNSTEQV 793
Query: 578 ERERLAKSL 586
E+E ++ L
Sbjct: 794 EKEVISPQL 802
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 219/413 (53%), Gaps = 58/413 (14%)
Query: 316 ILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQI 375
+L+R TGG+VIWR G AV +YRG Y VP V + K + +A K++
Sbjct: 1 LLQRLTGGIVIWREGPAVVIYRGKDY-VP-VWMRKMDLR---------EEAYRKRLQ--- 46
Query: 376 SMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLD 435
D +D S Q+ E S + +T+ ++E E+E L+D
Sbjct: 47 ---------LLDCDEEDESR----------QLMEEGTSYDCQTNMIQE----SEIEDLMD 83
Query: 436 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 495
LGP++ W PVD D+L + + PFR LPYGVR L E T ++ LA+ LP
Sbjct: 84 DLGPQFVGWIEGGRAPVDGDLL--VNSNFNSPFRRLPYGVRPRLTNFEMTEMRHLAKKLP 141
Query: 496 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 555
PHF LG+ R L+GLA A++KLWEKS +AKIA+KRGV ++RM ++ +LTGG L++RN
Sbjct: 142 PHFVLGQCRGLEGLASAIVKLWEKSEVAKIAMKRGVSRIVNDRMASELIRLTGGDLIARN 201
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAG 615
++ YRG +FL V L+E++ +A++L ++EE+ RL A+ + + +
Sbjct: 202 MSYIALYRGNSFLPAIVKGTLKEKDHIARTLLEDEERNRL-AAILARKAARDLARQ---- 256
Query: 616 TLKETLDANSRWGKRLDDSHKENL------VREAEVRRHAYLVQKLEKK-------LARA 662
++ L++ S + H+ +L + ++ AY+V +E + L
Sbjct: 257 RMQRILNSVSSFSYNFC-IHRSSLKFGLFLLSSIFMKISAYMVIDIEIRFKPIRIGLNVV 315
Query: 663 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
+K+ AER L + +KP + A E +T+EE + RK+GLRMK +LLLG+
Sbjct: 316 SQKISSAERELLNLNLKMKPKDMHASKEDVTEEEMYTLRKIGLRMKPYLLLGR 368
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 176/292 (60%), Gaps = 6/292 (2%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 306 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 365
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 545
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 366 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 425
Query: 546 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 603
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 426 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 485
Query: 604 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 486 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 541
Query: 664 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LG+
Sbjct: 542 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGR 593
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 223 KFPWEKRKEEVAEGRWLVKR--RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
K PWE+ +E R++++R + S + AEL L E L RLR + + ++ AG+
Sbjct: 179 KMPWEREEE-----RFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGV 233
Query: 281 TQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
T+ VV+ I WK +E+ ++ + NM+R EI+E TGGLV+ + +YRG
Sbjct: 234 TELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIE--TGGLVVLSKKEFLVVYRG 289
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 176/292 (60%), Gaps = 6/292 (2%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 308 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 367
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 545
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 368 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 427
Query: 546 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 603
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487
Query: 604 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 543
Query: 664 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LG+
Sbjct: 544 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGR 595
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 223 KFPWEKRKEEVAEGRWLVKR--RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
K PWE+ +E R++++R + S + AEL L E L RLR + + ++ AG+
Sbjct: 179 KMPWEREEE-----RFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGV 233
Query: 281 TQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
T+ VV+ I WK +E+ ++ + NM+R EI+E KTGGLV+ + +YRG
Sbjct: 234 TELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG 291
>gi|414870651|tpg|DAA49208.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 496
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 183/342 (53%), Gaps = 20/342 (5%)
Query: 225 PWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAV 284
PW ++E + +++ + AE L EL RLR L R K AG+T V
Sbjct: 141 PWAAARDEGLKVALRREKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDEV 200
Query: 285 VDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEV 343
V + +W + E + ++I +M R EILE KTGGLV+W G +YRG Y
Sbjct: 201 VKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKY-- 258
Query: 344 PSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVH 403
Q N + S +HK + N + + P ++Y
Sbjct: 259 ---QQNAKH-----------SHTFLTNVHKGYLVKHNVHTTLLKYGSIGPVLINNYGEAD 304
Query: 404 -ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVP 462
A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW PLPVDAD+LP VP
Sbjct: 305 DAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVP 364
Query: 463 GYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSI 522
G++ P+R+ P GVR TLA +E T L++LAR+LP HFALGR+ +LQGLA A++KLWEKS I
Sbjct: 365 GFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLI 424
Query: 523 AKIALKRGVQLTTSERMVEDI--KKLTGGTLLSRNKDFLVFY 562
AKIA+K G+Q T +E+M ++ K G +L + L+ +
Sbjct: 425 AKIAVKIGIQNTNNEQMAWNLKGKAYIGLSLTQSTESVLLLF 466
>gi|414870653|tpg|DAA49210.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 467
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 176/344 (51%), Gaps = 53/344 (15%)
Query: 225 PWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAV 284
PW ++E + +++ + AE L EL RLR L R K AG+T V
Sbjct: 141 PWAAARDEGLKVALRREKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDEV 200
Query: 285 VDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEV 343
V + +W + E + ++I +M R EILE KTGGLV+W G +YRG Y
Sbjct: 201 VKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKY-- 258
Query: 344 PSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVH 403
Q K H ++ NVH
Sbjct: 259 ---------------------QQNAKHSHTFLT------------------------NVH 273
Query: 404 ---ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGI 460
A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 274 KDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEF 333
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VPG++ P+R+ P GVR TLA +E T L++LAR+LP HFALGR+ +LQGLA A++KLWEKS
Sbjct: 334 VPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKS 393
Query: 521 SIAKIALKRGVQLTTSERMVEDI--KKLTGGTLLSRNKDFLVFY 562
IAKIA+K G+Q T +E+M ++ K G +L + L+ +
Sbjct: 394 LIAKIAVKIGIQNTNNEQMAWNLKGKAYIGLSLTQSTESVLLLF 437
>gi|9837552|gb|AAG00596.1|AF290415_1 CRS1 [Zea mays]
Length = 267
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 133/239 (55%), Gaps = 50/239 (20%)
Query: 309 NMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+M R EILE KTGGLV+W G +YRG Y Q
Sbjct: 26 SMDRAREILEIKTGGLVVWTKGDMHFVYRGSKY-----------------------QQNA 62
Query: 369 KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVK 425
K H ++ NVH A Q N ++ +++ + V+
Sbjct: 63 KHSHTFLT------------------------NVHKDDAFQENDQSICGQKDEEPVKGTL 98
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE EV +LLD LGPR+ DW PLPVDAD+LP VPG++ P+R+ P GVR TLA +E T
Sbjct: 99 YEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELT 158
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK 544
L++LAR+LP HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K
Sbjct: 159 YLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK 217
>gi|125547308|gb|EAY93130.1| hypothetical protein OsI_14936 [Oryza sativa Indica Group]
Length = 103
Score = 133 bits (335), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 421 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 480
V E+KYEDE++KL D LGPRY DWP DP P+DAD+LP VPGY+PPFRVLPYGVR +L+
Sbjct: 16 VPEIKYEDEIDKLSDELGPRYDDWPRPDPSPIDADLLPATVPGYKPPFRVLPYGVRPSLS 75
Query: 481 RKEATNLQRLARVLPPHFALG 501
R++ TNL+RLAR LPPHFALG
Sbjct: 76 RRDTTNLRRLARGLPPHFALG 96
>gi|326507158|dbj|BAJ95656.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 115
Score = 104 bits (260), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE EV +LLD LGPR+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T
Sbjct: 20 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELT 79
Query: 486 NLQRLARVLPPHFALG 501
L++LAR LP HFALG
Sbjct: 80 YLRKLARPLPTHFALG 95
>gi|326494498|dbj|BAJ90518.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326502328|dbj|BAJ95227.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 95
Score = 103 bits (256), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE EV +LLD LGPR+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T
Sbjct: 20 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELT 79
Query: 486 NLQRLARVLPPHFALG 501
L++LAR LP HFALG
Sbjct: 80 YLRKLARPLPTHFALG 95
>gi|413946393|gb|AFW79042.1| hypothetical protein ZEAMMB73_840751, partial [Zea mays]
Length = 140
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS 598
M E+IK LTGGTLL RNK ++V YRGK+FL V L ERE L K + + EEQ R
Sbjct: 1 MAEEIKNLTGGTLLLRNKFYIVIYRGKDFLPTSVAAVLAEREELTKDIYNMEEQR--RRV 58
Query: 599 AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKK 658
PS + ++ AGTL E +A +RWG+ + +E + + L +KLE K
Sbjct: 59 LITQPSDDGLDGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSEKQKLYRKLEHK 118
Query: 659 LARAERKLLRAERALSKVEESL 680
L+ A+ K+ RAER LSK+E SL
Sbjct: 119 LSIAQAKIHRAERLLSKIEASL 140
>gi|326506924|dbj|BAJ91503.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE EV +LLD LGPR+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T
Sbjct: 20 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELT 79
Query: 486 NLQRLARVLPPHFAL 500
L++LAR LP HFAL
Sbjct: 80 YLRKLARPLPTHFAL 94
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 251 ELTLP---ESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPA 307
E+T+P + EL RLR + K K I +GLT++V+ IH +W T+E+V+LK
Sbjct: 100 EVTVPCLEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLV 159
Query: 308 LNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
NM H I++R+TGGLVIWRSG+ + +YRG
Sbjct: 160 QNMNLAHNIVQRRTGGLVIWRSGSVMWVYRG 190
>gi|413918581|gb|AFW58513.1| hypothetical protein ZEAMMB73_947708, partial [Zea mays]
Length = 208
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 53/75 (70%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S+ S AEL LP ELRRL+ + + + + ++ AG+T+ +V+ IHE+W+ +E+V+L+ E
Sbjct: 133 SAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE 192
Query: 304 GAPALNMKRMHEILE 318
A+NM+R HEILE
Sbjct: 193 DVWAMNMRRTHEILE 207
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 133/296 (44%), Gaps = 29/296 (9%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGG----LVIWRSGTAVS 334
G+ VV+ +H WK E+V++ +G P ++ +ILE ++GG +V G A+
Sbjct: 177 GVFDGVVENMHLHWKHRELVKVIFKG-PIFEAEQTAKILEMESGGVLVGIVTTTKGQAII 235
Query: 335 LYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHK---QISMSGNSLSAAADKTAQ 391
YRG +Y+ PS + + + + S+ + + + ++ L +T +
Sbjct: 236 FYRGKNYQRPSELRPRHLLSKRQAYERSLEMQRKRSLEQHMLKLEKEIGKLQVGLYETGE 295
Query: 392 DPSNFD-SYNNVHATQVNLETASEE-QETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
S + N+ A L T E+ + +F + Y + + ++ G W P
Sbjct: 296 GNSGLEMEEKNLLALSEPLGTVLEDFDDEEFRSDENYNENLADDIERFG-----WKREKP 350
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTL-ARKEATNLQRLARVLPPHFALGRSRQLQG 508
P G+V P F+ P ++ + R+EA L + P H +G+S + G
Sbjct: 351 NP------RGVV--LDPIFKAQPLTIKERIRLRQEA-----LKQSDPMHINIGKSNMVAG 397
Query: 509 LAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 564
LA A+ ++K A + +K + T E +++ +++ TG L+SR + L+ YRG
Sbjct: 398 LAKAIRLYFQKQPFAIVGVKGRAKDTPVEEIIQQLEEATGAVLVSREPNKLILYRG 453
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 655 LEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 714
LE++L+ RK E+ L+K++ +K A+ E I+DEER+MF KLGLRM+A LL+G
Sbjct: 110 LEERLSLVARKKKYVEKELAKLDGQMKLADAPPAKEQISDEERYMFMKLGLRMRARLLMG 169
Query: 715 K 715
K
Sbjct: 170 K 170
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L +E+R L + + + GLT +++++HE WK + ++K +G
Sbjct: 82 SREEILGAPLTSAEVRELVTKARKEPRQINLGRDGLTHNMLNLVHEHWKRRRVCKVKCKG 141
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
P ++M + +LE KTGG +I R G AV L+RG +Y
Sbjct: 142 VPTVDMDNVCRVLEEKTGGKIILRQGGAVYLFRGRNY 178
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WKT E VR+K G P ++M+ + LE KTGG++I
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGVIIH 239
Query: 328 RSGTAVSLYRGVSY 341
R G+ + LYRG Y
Sbjct: 240 RHGSLLILYRGRHY 253
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 201 RGGFSKESPLG--LGEEVGSDGEVKFPWEKRKEEVA-----EGRWLVKRRSSRTSLAELT 253
R G +PLG + V + G + E+RK ++A +GR SR +
Sbjct: 181 RRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGR-------SREEVLGEP 233
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L SE+R L + I GLT ++++IH W+ EI +++ G P ++MK +
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSYE 342
LE K+GG VI R G V LYRG Y+
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYD 322
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 201 RGGFSKESPLG--LGEEVGSDGEVKFPWEKRKEEVA-----EGRWLVKRRSSRTSLAELT 253
R G +PLG + V + G + E+RK ++A +GR SR +
Sbjct: 181 RRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGR-------SREEVLGEP 233
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L SE+R L + I GLT ++++IH W+ EI +++ G P ++MK +
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSYE 342
LE K+GG VI R G V LYRG Y+
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYD 322
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + G T ++ +H WKT E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 181 RTKRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGLIIH 240
Query: 328 RSGTAVSLYRGVSY 341
R G+ + LYRG Y
Sbjct: 241 RHGSLLILYRGRHY 254
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 206 KESPLGLG----EEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRR 261
K SP G G E G P E + + R KRR R ++ LP +E +
Sbjct: 101 KYSPFGPGRLDREWTGVCAPAANPKATSVEGMEDPRLEGKRRVMREAIQGEPLPGAERKA 160
Query: 262 LRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILER 319
L + K+K +I GLT +++ IH W+ E VR+K G P ++MK + LE
Sbjct: 161 LVEKCQKNKTKRQINLGRDGLTHNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLED 220
Query: 320 KTGGLVIWRSGTAVSLYRGVSY 341
KT G +I R G + LYRG +Y
Sbjct: 221 KTFGKIIHRHGGFLVLYRGRNY 242
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 174 RTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 233
Query: 328 RSGTAVSLYRGVSYE 342
R G + LYRG Y
Sbjct: 234 RHGGQLILYRGRHYH 248
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 328 RSGTAVSLYRGVSY 341
R G + LYRG Y
Sbjct: 233 RHGGQLILYRGRHY 246
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 149 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 208
Query: 328 RSGTAVSLYRGVSY 341
R G + LYRG Y
Sbjct: 209 RHGGQLILYRGRHY 222
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I R G + LYRG
Sbjct: 371 GLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRG 430
Query: 339 VSY 341
Y
Sbjct: 431 RHY 433
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 241 KRRSSRTSLAE-LTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVR 299
+RR +L E LT E ++ + +TK + + GLT +++ IH WK +E VR
Sbjct: 152 RRRMREKTLGEPLTAAERKILVEKCQRHRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVR 211
Query: 300 LKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
+K G P ++MK + LE KT G VI R G + LYRG +Y
Sbjct: 212 IKCMGVPTVDMKNVCTQLEDKTSGKVIHRQGGLLVLYRGRNYH 254
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E P SE+R L + I GLT ++++IH W+ EI +++
Sbjct: 226 RSREEVLGEPLTP-SEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 284
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
G P ++MK + LE K+GG VI R G V +YRG Y+
Sbjct: 285 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFVYRGRHYD 324
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G++ V+ R+ L E L ++E+R L + + GLT ++++IH WK
Sbjct: 179 GKFPVEGRTREEILGE-PLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQ 237
Query: 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
+ +++ +G P ++M + LE KTGG +I R G V L+RG +Y
Sbjct: 238 RVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNY 283
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E+R L + I GLT ++++IH W+ EI +++
Sbjct: 200 RSREEVLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 258
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++MK + LE K+GG VI R G V LYRG +Y
Sbjct: 259 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNY 297
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E+R L + I GLT ++++IH W+ EI +++
Sbjct: 222 RSREEVLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 280
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++MK + LE K+GG VI R G V LYRG +Y
Sbjct: 281 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNY 319
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E+R L + I GLT ++++IH W+ EI +++
Sbjct: 220 RSREEVLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 278
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++MK + LE K+GG VI R G V LYRG +Y
Sbjct: 279 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNY 317
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 179 RTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 238
Query: 328 RSGTAVSLYRGVSYE 342
R G + LYRG Y
Sbjct: 239 RHGGQLILYRGRHYH 253
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKG 277
G + PW+ A G +SR + L E E+ +L R + +
Sbjct: 106 GRLDRPWDGVAAAAARGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGK 165
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+R+ + LYR
Sbjct: 166 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYR 225
Query: 338 GVSYE 342
G +Y+
Sbjct: 226 GRNYD 230
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKG 277
G + PW+ A G +SR + L E E+ +L R + +
Sbjct: 111 GRLDRPWDGVAAAAARGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGK 170
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+R+ + LYR
Sbjct: 171 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYR 230
Query: 338 GVSYE 342
G +Y+
Sbjct: 231 GRNYD 235
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L +E+R L + I GLT ++++IH W+ EI +++ G P ++MK +
Sbjct: 233 LTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 292
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
LE K+GG VI R G V LYRG +Y
Sbjct: 293 CYHLEEKSGGKVIHRVGGVVFLYRGRNY 320
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
GLT ++++IH WK +E VR+K G P ++M + LE KT G VI+R G + LYRG
Sbjct: 186 GLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIFRHGGTLILYRG 245
Query: 339 VSY 341
+Y
Sbjct: 246 RNY 248
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKG 277
G + PW+ A G +SR + L E E+ +L R + +
Sbjct: 110 GRLDRPWDGVAAAAARGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGK 169
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+R+ + LYR
Sbjct: 170 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYR 229
Query: 338 GVSYE 342
G +Y+
Sbjct: 230 GRNYD 234
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+RS + LYR
Sbjct: 171 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRSINIIILYR 230
Query: 338 GVSYE 342
G +Y+
Sbjct: 231 GRNYD 235
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G++ V+ R+ L E L ++E+R L + + GLT ++++IH WK
Sbjct: 179 GKFPVEGRTREEILGE-PLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQ 237
Query: 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
+ ++ +G P ++M + LE KTGG +I R G V L+RG +Y
Sbjct: 238 RVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNY 283
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G++ V+ R+ L E L ++E+R L + + GLT ++++IH WK
Sbjct: 46 GKFPVEGRTREEILGE-PLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQ 104
Query: 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
+ ++ +G P ++M + LE KTGG +I R G V L+RG +Y
Sbjct: 105 RVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNY 150
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 209 PLGLGEEV----GSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRN 264
PLG E V G +G + PW ++ V EG L + SR + L + E+R L
Sbjct: 45 PLGFREPVYSPFGPEGMAR-PWTGKQPNV-EGPKLGR---SREEILGEPLTKDEVRELVG 99
Query: 265 LTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGL 324
+ + + GLT +++++H WK + R+K G P ++M + ++E K+GG
Sbjct: 100 RACAERRRLDLGKDGLTHNMLELLHRHWKRRRVCRIKCYGVPTVDMDNLCRVIEEKSGGK 159
Query: 325 VIWRSGTAVSLYRGVSY 341
+I RS + ++RG +Y
Sbjct: 160 IIRRSQGMLYVFRGRNY 176
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ I+ WK +E V
Sbjct: 147 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDIYNHWKHAEAV 206
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 207 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHCGTLVLYRGRNYD 250
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKGAGLTQAVVDIIH 289
E+ + +W+ R + TL E E+ L R + + G+T ++D IH
Sbjct: 125 EIDQSQWV----EERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIH 180
Query: 290 EKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
WK +E VR+K G P L+M + LE K+GG +++R+ + LYRG +Y+
Sbjct: 181 NHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYD 233
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++ +H+ WK ++VR+K +G P ++M + +LE KTGG +I R+G V L+RG
Sbjct: 116 GFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIISRAGGVVYLFRG 175
Query: 339 VSY 341
+Y
Sbjct: 176 RNY 178
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L E E++ L ++K + + GLT ++D IH WK + ++K +G
Sbjct: 235 SREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKG 294
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE KTGG VI+ G + L+RG +Y
Sbjct: 295 VCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNY 331
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L E E++ L ++K + + GLT ++D IH WK + ++K +G
Sbjct: 235 SREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKG 294
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE KTGG VI+ G + L+RG +Y
Sbjct: 295 VCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNY 331
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E+R L +T + + GLT +++ IH+ WK + ++K +G ++M ++
Sbjct: 243 LTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDKV 302
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
E LE K GG VI+R G + L+RG +Y
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M+ + LE K GG +I+R+ + LYR
Sbjct: 174 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYR 233
Query: 338 GVSYE 342
G +Y+
Sbjct: 234 GRNYD 238
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M+ + LE K GG +I+R+ + LYR
Sbjct: 155 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYR 214
Query: 338 GVSYE 342
G +Y+
Sbjct: 215 GRNYD 219
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E++ L + + K + + GLT ++D IH WK + ++K +G ++M +
Sbjct: 248 LTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 307
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
+ LE +TGG +I+R G + L+RG +Y
Sbjct: 308 CQQLEERTGGKIIYRKGGVLYLFRGRNY 335
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG V+ RS + LYR
Sbjct: 167 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYR 226
Query: 338 GVSYE 342
G +Y+
Sbjct: 227 GRNYD 231
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG V+ RS + LYR
Sbjct: 167 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYR 226
Query: 338 GVSYE 342
G +Y+
Sbjct: 227 GRNYD 231
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE K+GG +++R + LYR
Sbjct: 165 GGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRHINILVLYR 224
Query: 338 GVSYE 342
G +Y+
Sbjct: 225 GRNYD 229
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG V+ RS + LYR
Sbjct: 167 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYR 226
Query: 338 GVSYE 342
G +Y+
Sbjct: 227 GRNYD 231
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE K+GG +I+R + LYR
Sbjct: 170 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRHINILLLYR 229
Query: 338 GVSYE 342
G +Y+
Sbjct: 230 GRNYD 234
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE K+GG V++R+ + LYR
Sbjct: 165 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVVYRNINILLLYR 224
Query: 338 GVSYE 342
G +Y+
Sbjct: 225 GRNYD 229
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE K+GG +I+R + LYR
Sbjct: 211 GGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYRHINILLLYR 270
Query: 338 GVSYE 342
G +Y+
Sbjct: 271 GRNYD 275
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 272 KTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGT 331
+ I GLT ++D+IH WK +++L+ +G P ++M + +E KTGG +I R G
Sbjct: 112 QVNIGKDGLTHNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRHGG 171
Query: 332 AVSLYRGVSY 341
++ L+RG +Y
Sbjct: 172 SIYLFRGRNY 181
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK +E VR+K G P ++MK + LE KT G +I
Sbjct: 178 KTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIH 237
Query: 328 RSGTAVSLYRGVSY 341
R ++ LYRG +Y
Sbjct: 238 RHCGSLVLYRGRNY 251
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E R L + I GLT ++++IH W+ E+ +++
Sbjct: 222 RSREEVLGE-PLTSAETRELVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRC 280
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++M + LE K+GG VI R G V LYRG +Y
Sbjct: 281 RGVPTVDMNNLCYHLEEKSGGKVIKRVGGVVFLYRGRNY 319
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L E++ L +T+ + + GLT ++D IH WK + ++K G
Sbjct: 243 SREEILGEPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMG 302
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE +TGG VI+R G V L+RG +Y
Sbjct: 303 VCTVDMDNVCQQLEERTGGKVIYRKGGVVYLFRGRNY 339
>gi|297604874|ref|NP_001056251.2| Os05g0551900 [Oryza sativa Japonica Group]
gi|255676553|dbj|BAF18165.2| Os05g0551900, partial [Oryza sativa Japonica Group]
Length = 73
Score = 58.5 bits (140), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 501 GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLT 547
GR+R QGLA A++KLWEKS + KIA+KRG+Q T ++ M E+IK T
Sbjct: 1 GRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKVWT 47
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++ IH WK +E+VR+K G P L+M + LE K+GG VI+R+ + LYR
Sbjct: 168 GGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLLYR 227
Query: 338 GVSYE 342
G +Y+
Sbjct: 228 GRNYD 232
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E+R L +T + + GLT +++ IH+ WK + ++K +G ++M +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
E LE K GG VI+R G + L+RG +Y
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L E E++ L ++K + + GLT ++D IH WK + ++K +G
Sbjct: 235 SREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKG 294
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE KTGG VI+ G + L+RG +Y
Sbjct: 295 VCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNY 331
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
+SR + L + E+ L T +TK + I GLT +++ IH WK + ++K +
Sbjct: 175 ASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G ++M + + LE K GG VI G + L+RG +Y
Sbjct: 235 GVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNY 272
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
+SR + L + E+ L T +TK + I GLT +++ IH WK + ++K +
Sbjct: 175 ASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G ++M + + LE K GG VI G + L+RG +Y
Sbjct: 235 GVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNY 272
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++++IH WK + +++ +G P ++M + +LE KTGG +I R G V L+RG
Sbjct: 228 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287
Query: 339 VSY 341
+Y
Sbjct: 288 RNY 290
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAG 279
G+++F K EEV R ++ + +R + +L P R NL G
Sbjct: 170 GDLQF--GKFPEEVKSRREILGKPLTRWEIKQLVKPLLSDNRQVNLGRD----------G 217
Query: 280 LTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
LT ++++IH W+ S + +++ +G P ++M + LE +TGG +I+R G V L+ G
Sbjct: 218 LTHNMLELIHSHWRRSPVCKVRCKGIPTVDMNNICRHLEERTGGKIIYRIGGVVYLFCGR 277
Query: 340 SYE 342
+Y+
Sbjct: 278 NYD 280
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++++IH WK + +++ +G P ++M + +LE KTGG +I R G V L+RG
Sbjct: 230 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLFRG 289
Query: 339 VSY 341
+Y
Sbjct: 290 RNY 292
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK +E VR+K G P ++MK + LE KT G +I
Sbjct: 173 KTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 328 RSGTAVSLYRGVSYE 342
R + LYRG +Y
Sbjct: 233 RHCGLLVLYRGRNYH 247
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 258 ELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEIL 317
E+R L + + GLT ++++IH WK + +++ +G P ++M + +
Sbjct: 246 EIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHI 305
Query: 318 ERKTGGLVIWRSGTAVSLYRGVSY 341
E KTGG +I R G + L+RG +Y
Sbjct: 306 EEKTGGKIIHRVGGVLYLFRGRNY 329
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++MK + LE KT G +I
Sbjct: 173 KTKKQINLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 328 RSGTAVSLYRGVSYE 342
R + LYRG +Y
Sbjct: 233 RHCGLLVLYRGRNYH 247
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 11/200 (5%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
L +L L+ L ++ K+ + G+ + +H WK E VR+ + P +K
Sbjct: 224 VLTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKE 283
Query: 313 MHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQLN---KRIYKRNELPASSVSQATD 368
M E LER +GG+VI GT + ++RG +Y+ P V + K KR L S Q+
Sbjct: 284 MGETLERLSGGIVIDIHQGTTIIMWRGRNYKRPKVDIPIIFKNFNKRKALIKSKHEQSIG 343
Query: 369 KQIHKQISMSGNSLSAAADKTAQDP--SNFDSYNNVHATQVNLETASEEQ---ETDFVRE 423
+ + + AD ++ + + N A S EQ ++D V +
Sbjct: 344 SLKDQIVKWEKDLRELRADMAREEAARARWLEENPGMAPPEPPAPVSVEQSDDDSDEVTD 403
Query: 424 VKYEDEVEKLLDGLGPRYTD 443
+ +D E +D LGP Y D
Sbjct: 404 ISDDDITE--VDDLGPEYDD 421
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 258 ELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEIL 317
E+R L + + GLT ++++IH WK + +++ +G P ++M + +
Sbjct: 245 EIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHI 304
Query: 318 ERKTGGLVIWRSGTAVSLYRGVSY 341
E KTGG +I R G + L+RG +Y
Sbjct: 305 EEKTGGKIIHRVGGVLYLFRGRNY 328
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 258 ELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEIL 317
E+R L + + GLT ++++IH WK + +++ +G P ++M + +
Sbjct: 246 EIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHI 305
Query: 318 ERKTGGLVIWRSGTAVSLYRGVSY 341
E KTGG +I R G + L+RG +Y
Sbjct: 306 EEKTGGKIIHRVGGVLYLFRGRNY 329
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++ IH WK +E VR+K G P L+M + LE K+GG VI+R+ + LYR
Sbjct: 168 GGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLLYR 227
Query: 338 GVSYE 342
G +Y+
Sbjct: 228 GRNYD 232
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
GLT +++++H WK + +++ +G P ++M + LE KTGG +I R G V L+RG
Sbjct: 167 GLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLFRG 226
Query: 339 VSY 341
+Y
Sbjct: 227 RNY 229
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + +TK + + GLT +++ IH WK + ++K +G
Sbjct: 176 SREDILGEPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 235
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE K GG VI R G + L+RG +Y
Sbjct: 236 VCTVDMDNICQQLEEKVGGKVIHRQGGVIFLFRGRNY 272
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 244 SSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLK 301
+SR L L E+E+ L R + + G+T ++D IH WK +E VR+K
Sbjct: 134 TSREDLLGEALSEAEVSELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIK 193
Query: 302 IEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
G L+M + LE KTGG +I RS + LYRG +Y+
Sbjct: 194 CLGVATLDMDNICFHLEDKTGGKIIHRSINILILYRGRNYD 234
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L T ++ + + G ++D IH WK + ++K G
Sbjct: 163 SREEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIG 222
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE KTGG VI+R G + L+RG +Y
Sbjct: 223 VCTVDMDNVCQQLEEKTGGKVIYRRGGVIYLFRGRNY 259
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
GLT ++++IH WK + +++ G P ++M + +E KTGG +I R G V L+RG
Sbjct: 222 GLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGKIIHRVGGVVYLFRG 281
Query: 339 VSY 341
+Y
Sbjct: 282 RNY 284
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E++ L + + I GLT +++ IH WK + ++K +G
Sbjct: 243 SREEILGEPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKG 302
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE +TGG +I+ G A+ LYRG +Y
Sbjct: 303 VCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNY 339
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + ++K + + GLT +++ IH WK + ++K +G
Sbjct: 62 SREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 121
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + LE K GG VI R G + L+RG +Y
Sbjct: 122 VCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNY 158
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + ++K + + GLT +++ IH WK + ++K +G
Sbjct: 176 SREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 235
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + LE K GG VI R G + L+RG +Y
Sbjct: 236 VCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNY 272
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+R L + + + I GLT ++D IH WK +++ +G
Sbjct: 192 SREEILGEPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKG 251
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + LE +TGG +I R G + L+RG +Y
Sbjct: 252 VCTVDMDNVCHQLEERTGGKIIHRKGGVLYLFRGRNY 288
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 273 TRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEI---LERKTGGLVIWRS 329
R+ +GL +V+ + W+ SE+V+L+I M + ++ LE++TGGLV+WR+
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKLRIVSRANKYMPYITQVCAALEQRTGGLVVWRA 198
Query: 330 GTAVSLYRGVSYEVPS 345
G ++ L+RG Y+ S
Sbjct: 199 GGSIWLFRGAGYDAAS 214
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + K + I GLT +++ IH WK + ++K +G
Sbjct: 174 SREEVLGEPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKG 233
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + + LE + GG VI R G V L+RG +Y
Sbjct: 234 VCTVDMDNVCQQLEERVGGKVIHRQGGVVFLFRGRNY 270
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%)
Query: 230 KEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIH 289
+EEV R SR + L + E+ RL T ++ + I GLT +++ IH
Sbjct: 215 EEEVQPVRLAGPVWESRDEVLGEPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIH 274
Query: 290 EKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
W ++K G ++M + + LE +TGG +I+R V L+RG +Y
Sbjct: 275 TYWMRRSACKIKCRGVCTVDMDNVCQQLEERTGGKIIYRQAGTVYLFRGKNY 326
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
QK + K+ RA + LSK+E S+ A D E IT EER +FR++GL+MKA+L
Sbjct: 8 QKTRTQAFHCSSKIHRAGKLLSKIEASMVLANPSDDREMITAEERSVFRRIGLKMKAYLP 67
Query: 713 LG 714
+G
Sbjct: 68 VG 69
>gi|357443457|ref|XP_003592006.1| hypothetical protein MTR_1g097730 [Medicago truncatula]
gi|357443499|ref|XP_003592027.1| hypothetical protein MTR_1g097960 [Medicago truncatula]
gi|355481054|gb|AES62257.1| hypothetical protein MTR_1g097730 [Medicago truncatula]
gi|355481075|gb|AES62278.1| hypothetical protein MTR_1g097960 [Medicago truncatula]
Length = 56
Score = 47.4 bits (111), Expect = 0.028, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 429 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 482
E+ LLD LGPR+ D + D LP +VP Y+ F++LPY V S L+RK
Sbjct: 5 ELNLLLDELGPRFKDL-------ILLDQLPAVVPRYKTSFKLLPYEVNSCLSRK 51
>gi|356572588|ref|XP_003554450.1| PREDICTED: uncharacterized protein LOC100801865 [Glycine max]
Length = 70
Score = 45.8 bits (107), Expect = 0.073, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 3/35 (8%)
Query: 494 LPPHFAL---GRSRQLQGLAVAMIKLWEKSSIAKI 525
+ PHFAL GR+R+LQGLA AM+K WE S+I K+
Sbjct: 1 MKPHFALANAGRNRELQGLARAMVKRWETSAIQKL 35
>gi|194704400|gb|ACF86284.1| unknown [Zea mays]
Length = 130
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 651 LVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAF 710
+ + +E +L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK F
Sbjct: 37 VAKDVETRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQF 95
Query: 711 LLLG 714
LLLG
Sbjct: 96 LLLG 99
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+KL KL +A++K R +AL K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 133 EKLLYKLKKAQKKEERYVQALKKIE-PVDSSETTHDPEILTPEEHFFFLKMGLKCKNYVP 191
Query: 713 LGK 715
+G+
Sbjct: 192 VGR 194
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 555
+ +GR QG+ + M W+K ++ +K E + ++ +LTGG +L
Sbjct: 189 YVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKE-IAAELARLTGGIVLDIHE 247
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
++ ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 248 ENTIIMYRGKNYSQPP-TEIMSPRITLSRKKALDKSKYRDGLRAVRNYIPRLE 299
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VP Q P V P+ L +E ++++A+ + +GR G+ + M W+K
Sbjct: 100 VPKMQGP-EVKPH----ELTGEERFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKH 154
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 576
K+ + + ++I +L+GG + D ++FYRGKN++ P V + L
Sbjct: 155 ETVKVICNSSCKPGQVQEFAQEIARLSGGIPIQIIGDDTVIFYRGKNYVQPKVMSPVDTL 214
Query: 577 QERERLAKS 585
+++ L KS
Sbjct: 215 SKKKALEKS 223
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 472 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 531
P + L +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 223
Query: 532 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 585
+ + +I +L+GG ++ D +VFYRGKN++ PDV + L +++ L KS
Sbjct: 224 KPGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKS 281
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 472 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 531
P + L +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 223
Query: 532 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 585
+ + +I +L+GG ++ D +VFYRGKN++ PDV + L +++ L KS
Sbjct: 224 KPGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKS 281
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 472 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 531
P + L +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 223
Query: 532 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 585
+ + +I +L+GG ++ D +VFYRGKN++ PDV + L +++ L KS
Sbjct: 224 KPGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKS 281
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A+RK R +AL K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 92 EKILYKLRKAQRKEERFVQALKKIEPK-ESSEATHDPEILTPEEHFFFLKMGLKCKNYVP 150
Query: 713 LGK 715
+G+
Sbjct: 151 VGR 153
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VP Q P V P L +E ++++A+ + +GR G+ + M W+K
Sbjct: 62 VPKLQGPI-VQPV----NLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKH 116
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 576
K+ K E +I +L+GGT + D ++FYRGKN++ P+V + L
Sbjct: 117 ETVKVICKPCKPGQVHE-YANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMSPIDTL 175
Query: 577 QERERLAKS 585
++ L KS
Sbjct: 176 SKKRALEKS 184
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A RK R AL+K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 75 EKILYKLRKARRKEERLAEALTKIEPK-ESSETTHDPEILTPEEHFFFLKMGLKCKNYVP 133
Query: 713 LGK 715
+G+
Sbjct: 134 IGR 136
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 555
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L
Sbjct: 131 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVE-LARLTGGIVLDIHE 189
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
++ ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 190 ENTIIMYRGKNYSQPP-TEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLE 241
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 464 YQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Y+ P P L +E L+R + +GR G+ + M W+K
Sbjct: 143 YEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETV 202
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLS-RNKDFLVFYRGKNFLSPDVTEALQ--ERE 580
K+ K E E++ +L+ GT++ + + ++FYRGKN++ P V ++
Sbjct: 203 KVICKPCRPGQVYE-YAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQ 261
Query: 581 RLAKSLQDEEEQARL 595
+L K L+D ++ L
Sbjct: 262 KLEKELEDYQKHVAL 276
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A RK R AL+K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 5 EKILYKLRKARRKEERLAEALTKIEPK-ESSETTHDPEILTPEEHFFFLKMGLKCKNYVP 63
Query: 713 LGK 715
+G+
Sbjct: 64 IGR 66
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 555
+ +GR QG+ + M W+K K+ +K E + ++ +LTGG +L
Sbjct: 229 YVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKE-IAAELARLTGGLVLDIHE 287
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
+D ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 288 EDTIIMYRGKNYSQPP-TEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLE 339
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S T E+ PE L+ + + K+ + G+ Q V+ +H WK + V++ ++
Sbjct: 202 SDTTHDPEILTPEEHFYFLK-MGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVK 260
Query: 304 GAPALNMKRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
+K + L R TGGLV+ + +YRG +Y P ++
Sbjct: 261 TFSPEEVKEIAAELARLTGGLVLDIHEEDTIIMYRGKNYSQPPTEI 306
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K ++ +K +E VE + +LTGG +L ++
Sbjct: 809 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVE-LARLTGGIVLDVHE 867
Query: 557 -DFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 868 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 919
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 753 EKILNKLTKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 811
Query: 713 LGK 715
+G+
Sbjct: 812 VGR 814
>gi|388514061|gb|AFK45092.1| unknown [Lotus japonicus]
Length = 161
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 479 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 538
L RK+A +++ P A+G+S + G+A A+ ++K S+A + +K + T+ +
Sbjct: 40 LLRKQALQMKKR-----PVLAIGKSNTVSGIAKAIKTHFQKHSLAIVNVKGRAKGTSVQE 94
Query: 539 MVEDIKKLTGGTLLSRNKDFLVFYRG 564
+V +++ TG L+S+ ++ YRG
Sbjct: 95 VVFKLEQATGAVLVSQEPSKVILYRG 120
>gi|147780327|emb|CAN67999.1| hypothetical protein VITISV_025803 [Vitis vinifera]
Length = 331
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 236 GRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 295
G++ V+ R+ L E L ++E+R L + + GLT ++++IH WK
Sbjct: 179 GKFPVEGRTREEILGE-PLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQ 237
Query: 296 EIVRLKIEGAPALNMKRMHEILERKT 321
+ +++ +G P ++M + LE T
Sbjct: 238 RVCKVRCKGVPTIDMDNVCHHLEHHT 263
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VP Q P V P L +E ++++A+ + +GR G+ + M W+K
Sbjct: 441 VPKLQGPI-VQPVN----LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKH 495
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDVTEAL 576
K+ K E +I +L+GGT + D ++FYRGKN++ P+V +
Sbjct: 496 ETVKVICKPCKPGQVHE-YANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMSPI 551
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 866 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 924
Query: 557 -DFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 925 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 976
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 810 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 868
Query: 713 LGK 715
+G+
Sbjct: 869 VGR 871
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + + K+ + G+ Q V+ +H WK + +++ I+ +
Sbjct: 846 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 904
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ G + +YRG +Y P ++
Sbjct: 905 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 943
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 658 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++ +G+
Sbjct: 125 KLLKARKKEERLREALKKIEPT-ESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGR 181
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + ++K+ + G+ Q V+ +H WK + +++ ++ A +
Sbjct: 156 EILTPEEHFFFLK-MGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEV 214
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDK 369
K + L R TGG+V+ + +YRG +Y P ++ + R LP V
Sbjct: 215 KEIATELARLTGGIVLGIHEEDTIIMYRGKNYSQPPTEI---MSPRVTLPRKKVLHVPKD 271
Query: 370 QIHKQI 375
+H I
Sbjct: 272 CLHHTI 277
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 131 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 189
Query: 557 -DFLVFYRGKNFLSPDVTEALQERERL--AKSLQDEEEQARLRASAFVLPSIE 606
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 190 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 241
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + + K+ + G+ Q V+ +H WK + +++ I+ +
Sbjct: 111 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 169
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ G + +YRG +Y P ++
Sbjct: 170 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 208
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 75 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 133
Query: 713 LGK 715
+G+
Sbjct: 134 VGR 136
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VP Q P V P+ L +E ++++A+ + LGR G+ + M W+K
Sbjct: 131 VPKVQGP-EVKPHD----LTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKH 185
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 576
K+ E ++I +L+GG + D ++FYRGKN++ P+V + L
Sbjct: 186 ETVKVICNFCKPGQVHE-YAQEIARLSGGIPIQVIGDDTIIFYRGKNYVQPEVMSPIDTL 244
Query: 577 QERERLAKS 585
++ L KS
Sbjct: 245 SKKRALEKS 253
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VP Q P V P L +E L+++A+ + +GR G+ + M W+K
Sbjct: 159 VPKAQGPV-VKP----DDLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKH 213
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 576
K+ K E +++ +L+GG L D ++FYRGKN+ P+V + L
Sbjct: 214 ETVKVFCKPCKPGQVHE-YAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPEVMSPIDTL 272
Query: 577 QERERLAKS 585
+++ L KS
Sbjct: 273 SKKKALEKS 281
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 253
Query: 557 -DFLVFYRGKNFLSPDVTEALQERERL--AKSLQDEEEQARLRASAFVLPSIE 606
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 254 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 305
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + + K+ + G+ Q V+ +H WK + +++ I+ +
Sbjct: 175 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 233
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ G + +YRG +Y P ++
Sbjct: 234 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 272
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 713 LGK 715
+G+
Sbjct: 198 VGR 200
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL PE +L+ + + F+ K+ + G+ VV +H WK E V++ + P +
Sbjct: 79 ELLTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEKI 137
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPS--VQLNKRIYKRNELPASSVSQAT 367
K M ++ R +GG+V+ + + ++RG +Y P + LN + KR L + QA
Sbjct: 138 KEMATMIARLSGGIVVNVHNVKTIIMFRGRNYRQPKDLIPLNT-LTKRKALFKARFEQAL 196
Query: 368 D------KQIHKQISMSG 379
+ KQI +Q+ G
Sbjct: 197 ESQKLNIKQIEQQLRRMG 214
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 658 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++ +G+
Sbjct: 125 KLLKARKKEERLREALKKIEPT-ESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGR 181
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 555
+ +GR QG+ + M W+K ++ +K E + ++ +LTGG +L
Sbjct: 176 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKE-IATELARLTGGIVLGIHE 234
Query: 556 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
+D ++ YRGKN+ P TE + R L K+L + + LRA +P +E
Sbjct: 235 EDTIIMYRGKNYSQPP-TEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLE 286
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + ++K+ + G+ Q V+ +H WK + +++ ++ A +
Sbjct: 156 EILTPEEHFFFLK-MGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEV 214
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ + +YRG +Y P ++
Sbjct: 215 KEIATELARLTGGIVLGIHEEDTIIMYRGKNYSQPPTEI 253
>gi|332288658|ref|YP_004419510.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
gi|330431554|gb|AEC16613.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
Length = 100
Score = 40.8 bits (94), Expect = 2.6, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 252 LTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMK 311
LTL + + L+ L + G GLT+ V+ I E++++KI G +
Sbjct: 3 LTLSTKQKQYLKGLAHHLNPVVMLGGNGLTEGVIAEIDNALNHHELIKVKISGVDREEKE 62
Query: 312 RMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKR 351
+ +ER+TG + R G + LYR + P++ L K+
Sbjct: 63 LVVAAIERETGACAVQRIGHILVLYR--PSDEPTIVLPKK 100
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 461 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 520
VP Q P V P L +E ++++A+ + +GR G+ + M W+K
Sbjct: 105 VPKLQGPI-VQPV----NLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKH 159
Query: 521 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 576
K+ K E +I +L+GGT + D ++FYRGKN++ P+ + L
Sbjct: 160 ETVKVICKPCKPGQVHE-YANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEXMSPIDTL 218
Query: 577 QERERLAKS 585
++ L KS
Sbjct: 219 SKKRALEKS 227
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 487 LQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKL 546
L+++++ + +GR G+ + M W+K K+ K + + +I +L
Sbjct: 183 LKKVSQKKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICK-PCKPGQIQEYASEIARL 241
Query: 547 TGGTLLS-RNKDFLVFYRGKNFLSPDV---TEALQERERLAKS 585
+GG ++ D +VFYRGK+++ PDV + L +++ L KS
Sbjct: 242 SGGVPINIVGNDTVVFYRGKDYVQPDVMSPIDTLSKKKALEKS 284
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL PE +L+ + + F+ K+ + G+ VV +H WK E V++ + P +
Sbjct: 149 ELLTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 207
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPS--VQLNKRIYKRNELPASSVSQAT 367
K M +L R +GG+VI + + ++RG +Y P + +N + KR L + QA
Sbjct: 208 KEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINT-LTKRKALFKARFEQAL 266
Query: 368 DKQ 370
+ Q
Sbjct: 267 ESQ 269
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++
Sbjct: 80 EKILYKLLKARKKEERLCEALKKIEPA-ESSETTHDPEILTPEEHFFFLKMGLKSKNYVP 138
Query: 713 LGK 715
+G+
Sbjct: 139 VGR 141
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S T E+ PE L+ + ++K+ + G+ Q V+ +H WK + +++ ++
Sbjct: 109 SETTHDPEILTPEEHFFFLK-MGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVK 167
Query: 304 GAPALNMKRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
A +K + L R +GG+V+ + +YRG +Y P ++
Sbjct: 168 TFSAEEVKEIATELARLSGGIVLDIHEDNTIIMYRGKNYSQPPTEI 213
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K K+ +K E + ++ +L+GG +L ++
Sbjct: 136 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKE-IATELARLSGGIVLDIHE 194
Query: 557 D-FLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 606
D ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 195 DNTIIMYRGKNYSQP-PTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLE 246
>gi|284006436|emb|CBA71679.1| primosomal replication protein N'' [Arsenophonus nasoniae]
Length = 204
Score = 40.4 bits (93), Expect = 3.5, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
E + E IK + ++ D +FYR + LS + E Q +L ++ +
Sbjct: 37 EALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQLKNAVITSRLEQVTF 96
Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD--------DSHKENLV-----REA 643
+ ++ I I + TL+E + +S+ K +D ++ L+ RE
Sbjct: 97 LTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYERLVQHQDYERRLIAMINDREQ 156
Query: 644 E-VRRHAYLV-QKLEKKLARAERKLLRAERALSKVEESLKPAERQA 687
+ V++ +Y+ QKL++++A +L+R +ALS++E +++ E Q+
Sbjct: 157 QLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIERDENQS 202
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL PE +L+ + + F+ K+ + G+ VV +H WK E V++ + P +
Sbjct: 149 ELLTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 207
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPS--VQLNKRIYKRNELPASSVSQAT 367
K M +L R +GG+VI + + ++RG +Y P + +N + KR L + QA
Sbjct: 208 KEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINT-LTKRKALFKARFEQAL 266
Query: 368 DKQ 370
+ Q
Sbjct: 267 ESQ 269
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 649 AYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMK 708
Y+VQ++ L +A++K R AL K+E + K +E DPE + EE F F K+GL+ K
Sbjct: 16 TYVVQRI-PSLTKAQKKKKRLCEALKKIEPA-KSSETTHDPEILXPEEHFFFLKMGLKRK 73
Query: 709 AFLLLGK 715
+ +G+
Sbjct: 74 NNVPVGR 80
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K K+ +K E + ++ +L+GG +L ++
Sbjct: 116 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKE-IAAELARLSGGIVLDIHE 174
Query: 557 D-FLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIETIEKSGT 613
D ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E E
Sbjct: 175 DNTIIMYRGKNYSQP-PTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQ-ELEIL 232
Query: 614 AGTLKETLDANSRWGKRLDDSHKENL 639
K + ++N+ + + +S +E++
Sbjct: 233 RAQFKSSAESNTDAAEAIQNSGRESI 258
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 658 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++ +G+
Sbjct: 65 KLLKARKKEERLCEALKKIEPA-ESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVGR 121
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
S T E+ PE L+ + ++K+ + G+ Q V+ +H WK + +++ ++
Sbjct: 89 SETTHDPEILTPEEHFFFLK-MGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVK 147
Query: 304 GAPALNMKRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
A +K + L R +GG+V+ + +YRG +Y P ++
Sbjct: 148 TFSAEEVKEIAAELARLSGGIVLDIHEDNTIIMYRGKNYSQPPTEI 193
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 472 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 531
P L+ +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 166 PMAKPDDLSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 224
Query: 532 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 585
+ + +I +L+GG ++ D +VFYRGKN++ P+V + L +++ L KS
Sbjct: 225 KPGQIQEYANEIARLSGGIPVNIIGDDTIVFYRGKNYVQPEVMSPIDTLSKKKALEKS 282
>gi|307106930|gb|EFN55174.1| hypothetical protein CHLNCDRAFT_52520 [Chlorella variabilis]
Length = 187
Score = 40.0 bits (92), Expect = 4.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
+LP L++LR K ++ G + + + ++ R+ G A NMK
Sbjct: 62 SLPPGRLKQLRRDGLALKDVIKLGRRGPAEGLAN---------QVARVYCHGKHAANMKV 112
Query: 313 MHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
+ + LE TGG+V+ ++G V LYRG ++
Sbjct: 113 LVQQLEAATGGMVVHKAGGTVLLYRGDGWQ 142
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 464 YQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Y+ P P L +E L+R + +GR G+ + M W+K
Sbjct: 158 YEAPRAPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETM 217
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLS-RNKDFLVFYRGKNFLSPDV 572
K+ K E E++ +L+ GT++ + + ++FYRGKN++ P V
Sbjct: 218 KVVCKPCRPGQVYE-YAEELARLSKGTVIDIKPNNTIIFYRGKNYVQPKV 266
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL PE +L+ + + F+ ++ + G+ VV +H WK E V++ + P +
Sbjct: 147 ELLTPE-QLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 205
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPS--VQLNKRIYKRNELPASSVSQAT 367
K M +L R +GG+V+ + ++RG +Y P + +N + KR L + QA
Sbjct: 206 KEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIPINT-LTKRKALFKARFEQAL 264
Query: 368 DKQ 370
D Q
Sbjct: 265 DSQ 267
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
EL PE +L+ + + F+ ++ + G+ VV +H WK E V++ + P +
Sbjct: 147 ELLTPE-QLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 205
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPS--VQLNKRIYKRNELPASSVSQAT 367
K M +L R +GG+V+ + ++RG +Y P + +N + KR L + QA
Sbjct: 206 KEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIPINT-LTKRKALFKARFEQAL 264
Query: 368 DKQ 370
D Q
Sbjct: 265 DSQ 267
>gi|114321127|ref|YP_742810.1| hypothetical protein Mlg_1978 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227521|gb|ABI57320.1| protein of unknown function UPF0044 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 100
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 252 LTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMK 311
+ L ES+ R LR L K R AGLT+AV+ I ++ E++++K+ G + +
Sbjct: 1 MRLNESQRRHLRRLAHDLKPVVRTGNAGLTEAVMAEIELALESHELIKVKLVGLERADRQ 60
Query: 312 RMHEILERKTGGLVIWRSGTAVSLYRG 338
E + +TG ++ + G LYR
Sbjct: 61 PTIEQICVETGAELVQKVGQVAVLYRA 87
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 288 IHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGT-AVSLYRGVSYEVPS- 345
+H WK E V++ + P +K M +L R +GG+VI T + ++RG +Y P
Sbjct: 178 MHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKN 237
Query: 346 -VQLNKRIYKRNELPASSVSQATDKQ 370
+ LN + KR L + QA + Q
Sbjct: 238 LIPLNT-LTKRKALFKARFEQALESQ 262
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L +L+ + + F+ K+ + G+ VV +H WK E V++ + P +K M
Sbjct: 134 LTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 193
Query: 314 HEILERKTGGLVI-WRSGTAVSLYRGVSYEVPS--VQLNKRIYKRNELPASSVSQATDKQ 370
+L R +GG+VI + ++RG +Y P + +N + KR L + QA D Q
Sbjct: 194 ATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPINT-LTKRKALFKARFEQALDSQ 252
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL A +K R AL K+E P+E DPE +T EE F F K+G + K ++
Sbjct: 147 EKILYKLKLARKKEERLVAALKKIEPE-DPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVP 205
Query: 713 LGK 715
+G+
Sbjct: 206 VGR 208
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL A +K R AL K+E + P+E DPE +T EE F F K+G + K ++
Sbjct: 148 EKILYKLKLARKKEERLLAALKKIEPN-DPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVP 206
Query: 713 LGK 715
+G+
Sbjct: 207 VGR 209
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 288 IHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGT-AVSLYRGVSYEVPS- 345
+H WK E V++ + P +K M +L R +GG+VI T + ++RG +Y P
Sbjct: 178 MHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKN 237
Query: 346 -VQLNKRIYKRNELPASSVSQATDKQ 370
+ LN + KR L + QA + Q
Sbjct: 238 LIPLNT-LTKRKALFKARFEQALESQ 262
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL A +K R AL K+E P+E DPE +T EE F F K+G + K ++
Sbjct: 148 EKILYKLKLARKKEERLVVALKKIEPE-DPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVP 206
Query: 713 LGK 715
+G+
Sbjct: 207 VGR 209
>gi|392574103|gb|EIW67240.1| hypothetical protein TREMEDRAFT_64488 [Tremella mesenterica DSM
1558]
Length = 613
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 23/154 (14%)
Query: 114 RKNNVDLSALGFARTDSDGNGVGGVDDG---GSTMGKIVEKLKKFGYVGDGDGDGDGDND 170
R+ + AL D D G+G G ++E + GY+GD G N
Sbjct: 327 RRGSSTSPALSMVEPDPDPAGLGLPSKNTLHSLFTGNVIEPVAMIGYLGDLLG-----NA 381
Query: 171 ERRGQGKERVIEKGSIEDIFYV----EEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPW 226
+R G+GK +VI + + EGL + GG +E+ GL +E G G +
Sbjct: 382 KRHGKGKGKVIFINDLNGAGVMRMDEREGLAMRSVGGARREAIKGLRKEHGRGGLIAV-- 439
Query: 227 EKRKEEVAEGRWLVKRRSSRTSLAELTLPESELR 260
E+ GR L++RR +L+ LP+ LR
Sbjct: 440 ----CEIVAGR-LIRRR----NLSPEDLPDIHLR 464
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 38.9 bits (89), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 464 YQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 523
Y+ P P L +E L+R + +GR G+ + M W+K
Sbjct: 167 YEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETV 226
Query: 524 KIALKRGVQLTTSERMVEDIKKLTGGTLLS-RNKDFLVFYRGKNFLSPDV 572
K+ K E E++ +L+ GT++ + + ++FYRGKN++ P V
Sbjct: 227 KVICKPCRPGQVYE-YAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKV 275
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,442,628,826
Number of Sequences: 23463169
Number of extensions: 516149670
Number of successful extensions: 1706166
Number of sequences better than 100.0: 760
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 546
Number of HSP's that attempted gapping in prelim test: 1702608
Number of HSP's gapped (non-prelim): 3156
length of query: 715
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 565
effective length of database: 8,839,720,017
effective search space: 4994441809605
effective search space used: 4994441809605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 81 (35.8 bits)