BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005091
         (715 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QZM|A Chain A, Staphylococcus Aureus Isda Neat Domain H83a Variant In
           Complex With Heme
 pdb|3QZM|B Chain B, Staphylococcus Aureus Isda Neat Domain H83a Variant In
           Complex With Heme
          Length = 127

 Score = 33.5 bits (75), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
            S +SQAT + I+ Q+   G+S  +A D   Q P      NN +  Q  L  AS  +E  
Sbjct: 1   GSHMSQATSQPINFQVQKDGSSEKSAMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60

Query: 420 F 420
           F
Sbjct: 61  F 61


>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
 pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 1 Of 4). This File Contains The 30s
           Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
           Molecule 1.
 pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 3 Of 4). This File Contains The 30s
           Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
           Molecule 2.
 pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 50s Subunit Of The
           First 70s Ribosome, With Rrf Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 50s Subunit Of The
           Second 70s Ribosome, With Rrf Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 50s
           Subunit Of The First 70s Ribosome, With Gentamicin And
           Rrf Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 50s
           Subunit Of The Second 70s Ribosome, With Gentamicin And
           Rrf Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           50s Subunit Of The First 70s Ribosome, With Paromomycin
           And Rrf Bound. The Entire Crystal Structure Contains Two
           70s Ribosomes And Is Described In Remark 400.
 pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           50s Subunit Of The Second 70s Ribosome, With Paromomycin
           And Rrf Bound. The Entire Crystal Structure Contains Two
           70s Ribosomes And Is Described In Remark 400.
 pdb|3J0D|J Chain J, Models For The T. Thermophilus Ribosome Recycling Factor
           Bound To The E. Coli Post-Termination Complex
 pdb|3J0E|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor
           And The E. Coli Elongation Factor G Bound To The E. Coli
           Post-Termination Complex
          Length = 185

 Score = 32.7 bits (73), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 309 NMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
           +M++  E+LE    GL   R+  A+ L+  V Y    V LN+        P + V Q+ D
Sbjct: 13  HMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD 72

Query: 369 KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
           +          N+L A            +  N   A  +N+   +EE+  D VR V+
Sbjct: 73  Q----------NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVR 119


>pdb|2O1A|A Chain A, Crystal Structure Of Iron-regulated Surface Determinant
           Protein A From Staphylococcus Aureus- Targeted Domain
           47...188
          Length = 142

 Score = 32.3 bits (72), Expect = 1.00,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
           ++ VSQAT + I+ Q+   G+S  +  D   Q P      NN +  Q  L  AS  +E  
Sbjct: 12  STQVSQATSQPINFQVQKDGSSEKSHXDDYXQHPGKVIKQNNKYYFQTVLNNASFWKEYK 71

Query: 420 F 420
           F
Sbjct: 72  F 72


>pdb|3QZL|A Chain A, Staphylococcus Aureus Isda Neat Domain K75a Variant In
           Complex With Heme
          Length = 127

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
            S +SQAT + I+ Q+   G+S  +  D   Q P      NN +  Q  L  AS  +E  
Sbjct: 1   GSHMSQATSQPINFQVQADGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60

Query: 420 F 420
           F
Sbjct: 61  F 61


>pdb|3QZN|A Chain A, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
           Complex With Heme
 pdb|3QZN|B Chain B, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
           Complex With Heme
 pdb|3QZN|C Chain C, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
           Complex With Heme
          Length = 127

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
            S +SQAT + I+ Q+   G+S  +  D   Q P      NN +  Q  L  AS  +E  
Sbjct: 1   GSHMSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60

Query: 420 F 420
           F
Sbjct: 61  F 61


>pdb|3QZO|A Chain A, Staphylococcus Aureus Isda Neat Domain In Complex With
           Heme, Reduced Crystal
 pdb|3QZO|B Chain B, Staphylococcus Aureus Isda Neat Domain In Complex With
           Heme, Reduced Crystal
 pdb|3QZO|C Chain C, Staphylococcus Aureus Isda Neat Domain In Complex With
           Heme, Reduced Crystal
 pdb|3QZO|D Chain D, Staphylococcus Aureus Isda Neat Domain In Complex With
           Heme, Reduced Crystal
 pdb|3QZP|A Chain A, Staphylococcus Aureus Isda Neat Domain In Complex With
           Cobalt- Protoporphyrin Ix
 pdb|3QZP|B Chain B, Staphylococcus Aureus Isda Neat Domain In Complex With
           Cobalt- Protoporphyrin Ix
          Length = 127

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
            S +SQAT + I+ Q+   G+S  +  D   Q P      NN +  Q  L  AS  +E  
Sbjct: 1   GSHMSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60

Query: 420 F 420
           F
Sbjct: 61  F 61


>pdb|2ITE|A Chain A, Crystal Structure Of The Isda Neat Domain From
           Staphylococcus Aureus
 pdb|2ITE|B Chain B, Crystal Structure Of The Isda Neat Domain From
           Staphylococcus Aureus
 pdb|2ITF|A Chain A, Crystal Structure Isda Neat Domain From Staphylococcus
           Aureus With Heme Bound
 pdb|2ITF|B Chain B, Crystal Structure Isda Neat Domain From Staphylococcus
           Aureus With Heme Bound
 pdb|2ITF|C Chain C, Crystal Structure Isda Neat Domain From Staphylococcus
           Aureus With Heme Bound
 pdb|2ITF|D Chain D, Crystal Structure Isda Neat Domain From Staphylococcus
           Aureus With Heme Bound
          Length = 127

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%)

Query: 360 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 419
            S  SQAT + I+ Q+   G+S  +  D   Q P      NN +  Q  L  AS  +E  
Sbjct: 1   GSHXSQATSQPINFQVQKDGSSEKSHXDDYXQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60

Query: 420 F 420
           F
Sbjct: 61  F 61


>pdb|1JO0|A Chain A, Structure Of Hi1333, A Hypothetical Protein From
           Haemophilus Influenzae With Structural Similarity To
           Rna-binding Proteins
 pdb|1JO0|B Chain B, Structure Of Hi1333, A Hypothetical Protein From
           Haemophilus Influenzae With Structural Similarity To
           Rna-binding Proteins
          Length = 98

 Score = 29.3 bits (64), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKR 312
           TL   + + L+ L         + G GLT+ V+  I       E++++K+ GA     + 
Sbjct: 2   TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61

Query: 313 MHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKR 351
           +   + R+T    +   G  + LYR    E   +QL ++
Sbjct: 62  IINAIVRETKAAQVQTIGHILVLYR--PSEEAKIQLPRK 98


>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1)
 pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
 pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumped Kinase Inhibitor
           Rm-1-95
 pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
           Rm-1-132
 pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
           Rm-1-89
 pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
           Rm-1-130
 pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
           Rm-1-87
 pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Inhibitor Uw1300
 pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
 pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Inhibitor Rm-1-176
 pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Inhibitor Uw1288
 pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
           (Tgcdpk1) In Complex With Inhibitor Uw1299
          Length = 484

 Score = 29.3 bits (64), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 292 WKTSEIVRLKIEGAPALNMKRMHEILERKTGG-----LVIWR--SGTAVSLYRGVSYEVP 344
           W T  I+ + + G P  N    ++IL++   G     L  W+  S +A  L R +   VP
Sbjct: 211 WSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVP 270

Query: 345 SVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSL 382
           S+    RI  R+ L    +   T +QI   +    N++
Sbjct: 271 SM----RISARDALDHEWIQTYTKEQISVDVPSLDNAI 304


>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
 pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
 pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
           Dodecameric Peptide Complex
 pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
           Dodecameric Peptide Complex
 pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
           Dodecameric Peptide Complex
 pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
           Dodecameric Peptide Complex
          Length = 146

 Score = 29.3 bits (64), Expect = 8.9,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 479 LARKEATNLQRLARVLPPHFALGR-----SRQLQGLAVAMIKLWEKSSIAKIALKRGVQL 533
           LA K+ +N++ +  VL      G+     +  ++G A+A + +     I K+A  +    
Sbjct: 32  LADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 91

Query: 534 TTSER-MVEDIKKLTGGTLLS 553
               + M++DI  LTGGT++S
Sbjct: 92  GDRRKAMLQDIATLTGGTVIS 112


>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
           Toxoplasma Gondii, Tgme49.101440
          Length = 507

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 292 WKTSEIVRLKIEGAPALNMKRMHEILERKTGG-----LVIWR--SGTAVSLYRGVSYEVP 344
           W T  I+ + + G P  N    ++IL++   G     L  W+  S +A  L R +   VP
Sbjct: 234 WSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVP 293

Query: 345 SVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSL 382
           S+    RI  R+ L    +   T +QI   +    N++
Sbjct: 294 SM----RISARDALDHEWIQTYTKEQISVDVPSLDNAI 327


>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
           Tgme49_101440, In Presence Of Calcium
          Length = 508

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 292 WKTSEIVRLKIEGAPALNMKRMHEILERKTGG-----LVIWR--SGTAVSLYRGVSYEVP 344
           W T  I+ + + G P  N    ++IL++   G     L  W+  S +A  L R +   VP
Sbjct: 235 WSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVP 294

Query: 345 SVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSL 382
           S+    RI  R+ L    +   T +QI   +    N++
Sbjct: 295 SM----RISARDALDHEWIQTYTKEQISVDVPSLDNAI 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,595,270
Number of Sequences: 62578
Number of extensions: 782909
Number of successful extensions: 1855
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 31
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)