BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005091
(715 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/503 (36%), Positives = 275/503 (54%), Gaps = 49/503 (9%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSL---AELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
PW ++E + +V RR +T + AE L EL RLR + R K AG+
Sbjct: 125 VPWAAARDEETK---VVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGI 181
Query: 281 TQAVVDIIHEKW-KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
T VV+ + +W K E+ ++I M R EILE KTGGLV+W G +YRG
Sbjct: 182 TDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGS 241
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
SY ++ KR H+ LS T+ +P++ Y
Sbjct: 242 SY----LENAKR--------------------HRDFVNYNEELSPV---TSNNPTSQGKY 274
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
+ T N +++++ ++ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 275 WSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPE 334
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+VP ++ PFR P GVR LA +E T L++ AR LP HF LGR+ +LQGLA A++KLWEK
Sbjct: 335 VVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEK 394
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD+++ YRGK+FL V E++ ER
Sbjct: 395 SLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIER 454
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
E Q +EE+ARL+ + + + + GT +E D + +R ++ N
Sbjct: 455 ESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHARRTTEN---NF 511
Query: 640 VREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERALSKVEESLKPAERQADPESI 692
+ E ++H +LEK+L E +K+ R+ + L+K+ S P+++ D E +
Sbjct: 512 RIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELL 566
Query: 693 TDEERFMFRKLGLRMKAFLLLGK 715
T+EER +FRK+GL+M +LLG+
Sbjct: 567 TEEERRIFRKIGLKMDEHVLLGR 589
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 63/335 (18%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
GL A++ + W+ S I ++ ++ G N ++M L+R TGG VI R+ + +YR
Sbjct: 383 GLAAAILKL----WEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYR 438
Query: 338 GVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDP--SN 395
G + +P + + + +R S V K+ ++ M+ +SL +++
Sbjct: 439 GKDF-LPG-GVAESVIERE----SQVHDQQAKEEEARLKMA-DSLQMIVGLSSERSYVGT 491
Query: 396 FDSYNNVH------ATQVNLETASEEQETDFVREVKYED--------EVEKLLDGLGPRY 441
F Y + H T+ N E ++ +E+K ++ ++E+ L +
Sbjct: 492 FREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLH 551
Query: 442 TDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALG 501
+ W P D D R L +E +++ + H LG
Sbjct: 552 SSW---SPSKKDGD--------------------RELLTEEERRIFRKIGLKMDEHVLLG 588
Query: 502 RSRQLQGLAVAMIKLWEKSSIAKIALK--RGVQLTTSERMVEDIKKLTGGTLLSRNK--- 556
R +G+ + + W+ + K+ K + Q+T + M+E TGGTL++ +
Sbjct: 589 RRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLE---VETGGTLIAIERFTT 645
Query: 557 -DFLVFYRGKNFLSPD---VTEALQERERLAKSLQ 587
++ YRGKN+ P + L +RE L +S++
Sbjct: 646 SHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIE 680
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L E E R R + + + G+ + V++ IH+ WK E+V++ + A +
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625
Query: 314 HEILERKTGGLVI----WRSGTAVSLYRGVSYEVPS 345
+LE +TGG +I + + A+ LYRG +Y P+
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPT 661
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/446 (37%), Positives = 250/446 (56%), Gaps = 52/446 (11%)
Query: 274 RIKGAGLTQAVVDIIHEKWKT-SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
R K AG+T VV + +W + E+ ++I +M R EILE KTGGLV+W G
Sbjct: 190 RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249
Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQD 392
+YRG Y Q K H ++
Sbjct: 250 HFVYRGSKY-----------------------QQNAKHSHTFLT---------------- 270
Query: 393 PSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
NVH A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW P
Sbjct: 271 --------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTP 322
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP VPG + P+R+ P GVR TLA +E T L++LAR+LP HFALGR+ +LQGL
Sbjct: 323 LPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGL 382
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 383 AAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLP 442
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGK 629
V + + +RE Q +EE+ARL+A L + + + + GT +E ++++
Sbjct: 443 GGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGTFREYQGFHAKFVH 501
Query: 630 RLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADP 689
++ + EAE R ++ E KL+ +K+ R+ +AL+K+ S P+E+ AD
Sbjct: 502 ENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSWSPSEQSADR 561
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGK 715
E +T+EE+ MFR++G +M +LLG+
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGLVLLGR 587
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 79/371 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L A++ + W+ S I ++ ++ G
Sbjct: 351 TLADEELTYLRKLARLLPTHFALGRNTRLQG--LAAAILKL----WEKSLIAKIAVKIGI 404
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
N ++M L+ TGG VI R+ + LYRG + +P + + + +R +Q
Sbjct: 405 QNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDF-LPG-GVAQTVIQRE-------AQ 455
Query: 366 ATDKQIHKQIS--MSGNSLSAAADKTAQDP-SNFDSYNNVHATQVNLETAS-------EE 415
D+Q+ ++ + + +SL + + + F Y HA V+ T + E
Sbjct: 456 VHDEQVKEEEARLKAVDSLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEA 515
Query: 416 QETDFVREVKYED--------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 467
++ +E+K + ++E+ L ++ W P AD
Sbjct: 516 EKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSW---SPSEQSAD------------ 560
Query: 468 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 527
R L +E +R+ R + LGR G+ + + W+ + K+
Sbjct: 561 --------REHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVIT 612
Query: 528 K----RGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSP---DVTEAL 576
K R + S VE TGG L++ K ++ YRGKN+ P + L
Sbjct: 613 KQNQTRQIMYAASLLEVE-----TGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLL 667
Query: 577 QERERLAKSLQ 587
+RE L +S++
Sbjct: 668 TKREALRRSIE 678
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 176/292 (60%), Gaps = 6/292 (2%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 308 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 367
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 545
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 368 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 427
Query: 546 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 603
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487
Query: 604 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 543
Query: 664 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGK 715
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LG+
Sbjct: 544 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGR 595
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 223 KFPWEKRKEEVAEGRWLVKR--RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
K PWE+ +E R++++R + S + AEL L E L RLR + + ++ AG+
Sbjct: 179 KMPWEREEE-----RFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGV 233
Query: 281 TQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
T+ VV+ I WK +E+ ++ + NM+R EI+E KTGGLV+ + +YRG
Sbjct: 234 TELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG 291
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRLRN----LTFQTKSKTRIKGAGLTQAVVDI 287
EV G RR + A+LT + EL LRN L F GL A+V +
Sbjct: 341 EVVNGYMTPSRRCPPNTRAKLT--DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKL 398
Query: 288 IHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
W+ I ++ I+ GA N + M + L TGG++I R+ + LYRG +
Sbjct: 399 ----WEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDF 449
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
LR + + S + G+ V++ +H+ WK E+ ++ + + LE ++
Sbjct: 580 LRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETES 639
Query: 322 GGLVI----WRSGTAVSLYRGVSYEVPSVQLNKR--IYKRNELPASSVSQ 365
G++I + G A+ +YRG +Y+ PS +L + + KR L S V Q
Sbjct: 640 NGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQ 689
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 201 RGGFSKESPLG--LGEEVGSDGEVKFPWEKRKEEVA-----EGRWLVKRRSSRTSLAELT 253
R G +PLG + V + G + E+RK ++A +GR SR +
Sbjct: 181 RRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGR-------SREEVLGEP 233
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L SE+R L + I GLT ++++IH W+ EI +++ G P ++MK +
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSYE 342
LE K+GG VI R G V LYRG Y+
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYD 322
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 328 RSGTAVSLYRGVSY 341
R G + LYRG Y
Sbjct: 233 RHGGQLILYRGRHY 246
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E+R L + I GLT ++++IH W+ EI +++
Sbjct: 220 RSREEVLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 278
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++MK + LE K+GG VI R G V LYRG +Y
Sbjct: 279 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNY 317
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKG 277
G + PW+ A G +SR + L E E+ +L R + +
Sbjct: 111 GRLDRPWDGVAAAAARGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGK 170
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+R+ + LYR
Sbjct: 171 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYR 230
Query: 338 GVSYE 342
G +Y+
Sbjct: 231 GRNYD 235
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKGAGLTQAVVDIIH 289
E+ + +W+ R + TL E E+ L R + + G+T ++D IH
Sbjct: 125 EIDQSQWV----EERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIH 180
Query: 290 EKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
WK +E VR+K G P L+M + LE K+GG +++R+ + LYRG +Y+
Sbjct: 181 NHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYD 233
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E+R L +T + + GLT +++ IH+ WK + ++K +G ++M +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
E LE K GG VI+R G + L+RG +Y
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 499 ALGRSRQLQ----GLAVAMIK----LWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGT 550
L +RQL GL M+ LW++ + KI K GV + + E +++ GG
Sbjct: 255 CLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQLEEKIGGK 313
Query: 551 LLSRNKDFLVFYRGKNF 567
++ R L +RG+N+
Sbjct: 314 VIYRRGGVLFLFRGRNY 330
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+ P Y + +P G L R+EATN++R R L P LG++ L + + +E
Sbjct: 346 VAPVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEV 401
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGK----NFLSPDVTEA 575
+ +I + G++ + ++ +K L L+S + ++ +RG+ + +PD
Sbjct: 402 CELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD 460
Query: 576 LQERERLAKSLQDEEEQA 593
+ E + +L +++E +
Sbjct: 461 ILEDIEVDTALPEDDEPS 478
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
+SR + L + E+ L T +TK + I GLT +++ IH WK + ++K +
Sbjct: 175 ASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G ++M + + LE K GG VI G + L+RG +Y
Sbjct: 235 GVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNY 272
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++++IH WK + +++ +G P ++M + +LE KTGG +I R G V L+RG
Sbjct: 228 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287
Query: 339 VSY 341
+Y
Sbjct: 288 RNY 290
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + ++K + + GLT +++ IH WK + ++K +G
Sbjct: 176 SREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 235
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + LE K GG VI R G + L+RG +Y
Sbjct: 236 VCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNY 272
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 446 GCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQ 505
G P+ L G+ P YQ R G L ++E + L + + +GR
Sbjct: 154 GVKPVQSPGPFLAGMEPRYQSVSREDILG--EPLTKEEVSELVKGSLKSKRQLNMGRDGL 211
Query: 506 LQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGK 565
+ + W++ + KI K GV + + +++ GG ++ R + +RG+
Sbjct: 212 THNMLENIHSHWKRKRVCKIKCK-GVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGR 270
Query: 566 NF 567
N+
Sbjct: 271 NY 272
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 253
Query: 557 -DFLVFYRGKNFLSPDVTEALQERERL--AKSLQDEEEQARLRASAFVLPSIE 606
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 254 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 305
Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + + K+ + G+ Q V+ +H WK + +++ I+ +
Sbjct: 175 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 233
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ G + +YRG +Y P ++
Sbjct: 234 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 272
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 713 LGK 715
+G+
Sbjct: 198 VGR 200
>sp|Q3IJ53|IF2_PSEHT Translation initiation factor IF-2 OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=infB PE=3 SV=1
Length = 886
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 515 KLWEKSSIAKIALKRGVQLTTSER--MVEDIKKLTGGT--------LLSRNKDFLVFYRG 564
KL ++ S A I + G +T +E+ +++ + K GGT L R + G
Sbjct: 19 KLLQQFSQAGITKQAGESVTEAEKATLLDHLSKQHGGTGSDGPARMTLQRKSKSTLSVTG 78
Query: 565 KNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGT-AGTLKETLDA 623
+ V +++ K E+EQ LR +A +E +K+ A LK +A
Sbjct: 79 STGKAKSVQVEVRKTRTYVKKSAMEQEQEELRLAAEEKLRLEEQQKAAQEAAELKAKQEA 138
Query: 624 NSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE-SLKP 682
+ + D KE R+A+ R A Q ++ A++E+ + AER + EE +LK
Sbjct: 139 ERKAKEDADRKAKEEAKRKADAERKAKQKQMTPEQSAKSEKDRIEAERLQKEAEEAALKK 198
Query: 683 AERQA 687
AE +A
Sbjct: 199 AEEEA 203
>sp|Q8DY07|SECA1_STRA5 Protein translocase subunit SecA 1 OS=Streptococcus agalactiae
serotype V (strain ATCC BAA-611 / 2603 V/R) GN=secA1
PE=3 SV=1
Length = 842
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 616 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 675
T+K +DA+SR K N R A + A V +L + L AE K L ERAL+
Sbjct: 637 TIKRAVDAHSRSDKNTAAEAIVNFARSALLDEEAITVSEL-RGLKEAEIKELLYERALAV 695
Query: 676 VEESLKPAERQADPESITDEERFMF 700
E+ + + DPE+I + ++ +
Sbjct: 696 YEQQIA---KLKDPEAIIEFQKVLI 717
>sp|Q8E3M6|SECA1_STRA3 Protein translocase subunit SecA 1 OS=Streptococcus agalactiae
serotype III (strain NEM316) GN=secA1 PE=3 SV=1
Length = 842
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 616 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 675
T+K +DA+SR K N R A + A V +L + L AE K L ERAL+
Sbjct: 637 TIKRAVDAHSRSDKNTAAEAIVNFARSALLDEEAITVSEL-RGLKEAEIKELLYERALAV 695
Query: 676 VEESLKPAERQADPESITDEERFMF 700
E+ + + DPE+I + ++ +
Sbjct: 696 YEQQIA---KLKDPEAIIEFQKVLI 717
>sp|Q3JZK2|SECA1_STRA1 Protein translocase subunit SecA 1 OS=Streptococcus agalactiae
serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
GN=secA1 PE=3 SV=1
Length = 842
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 616 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 675
T+K +DA+SR K N R A + A V +L + L AE K L ERAL+
Sbjct: 637 TIKRAVDAHSRSDKNTAAEAIVNFARSALLDEEAITVSEL-RGLKEAEIKELLYERALAV 695
Query: 676 VEESLKPAERQADPESITDEERFMF 700
E+ + + DPE+I + ++ +
Sbjct: 696 YEQQIA---KLKDPEAIIEFQKVLI 717
>sp|Q9WX76|RRF_THET8 Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=frr PE=1 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 309 NMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+M++ E+LE GL R+ A+ L+ V Y V LN+ P + V Q+ D
Sbjct: 13 HMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD 72
Query: 369 KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
+ N+L A + N A +N+ +EE+ D VR V+
Sbjct: 73 Q----------NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVR 119
>sp|Q72KE0|RRF_THET2 Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 309 NMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+M++ E+LE GL R+ A+ L+ V Y V LN+ P + V Q+ D
Sbjct: 13 HMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD 72
Query: 369 KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
+ N+L A + N A +N+ +EE+ D VR V+
Sbjct: 73 Q----------NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVR 119
>sp|Q9W252|RAD50_DROME DNA repair protein RAD50 OS=Drosophila melanogaster GN=rad50 PE=2
SV=4
Length = 1318
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 617 LKETLDAN---SRWGKRLD-------DSHKENLVREAEVRRHAYLVQKLEKK---LARAE 663
LKE DA + + K LD ++ +E ++EA ++ AYL Q++E K L +A+
Sbjct: 179 LKEKFDAIFGITEYNKALDKIIKLRKEAMEELKIKEANIKHVAYLKQEMEVKTLNLQKAQ 238
Query: 664 RKLLRAERALSKVEESLKPAE 684
RK + S+ EE +KP E
Sbjct: 239 RKCDAIKAQCSECEEEMKPIE 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,353,215
Number of Sequences: 539616
Number of extensions: 12443138
Number of successful extensions: 43826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 43260
Number of HSP's gapped (non-prelim): 723
length of query: 715
length of database: 191,569,459
effective HSP length: 125
effective length of query: 590
effective length of database: 124,117,459
effective search space: 73229300810
effective search space used: 73229300810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 65 (29.6 bits)