Query 005091
Match_columns 715
No_of_seqs 336 out of 963
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.9 1.2E-26 4E-31 207.5 12.8 89 253-341 2-90 (98)
2 1rq8_A Conserved hypothetical 99.9 2.5E-26 8.4E-31 207.5 12.6 88 253-340 1-88 (104)
3 1rq8_A Conserved hypothetical 99.9 3.7E-25 1.3E-29 199.8 12.7 88 478-566 1-88 (104)
4 1jo0_A Hypothetical protein HI 99.9 3.1E-25 1.1E-29 198.4 11.8 89 478-567 2-90 (98)
5 3ka5_A Ribosome-associated pro 71.3 9.7 0.00033 31.8 6.4 50 296-345 1-53 (65)
6 3k2t_A LMO2511 protein; lister 58.0 10 0.00035 30.8 4.0 49 296-344 1-52 (57)
7 3lyv_A Ribosome-associated fac 53.6 12 0.0004 31.4 3.8 50 296-345 2-54 (66)
8 3he4_A Synzip6; heterodimeric 23.2 1.9E+02 0.0065 22.9 5.9 34 646-679 20-53 (56)
9 2e6x_A TT1592, hypothetical pr 20.6 37 0.0012 28.6 1.4 17 315-331 3-19 (69)
10 1ydh_A AT5G11950; structural g 19.6 1.2E+02 0.0041 30.1 5.2 58 483-545 124-186 (216)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=1.2e-26 Score=207.52 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHhhhcCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 005091 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332 (715)
Q Consensus 253 ~Lt~kErr~LR~lA~~Lkp~v~IGK~GlTd~Vv~~I~~awek~ELVKIK~~g~~~~dmk~~ae~Le~kTGg~VVqriG~~ 332 (715)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++..+++++|++|+++|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 005091 333 VSLYRGVSY 341 (715)
Q Consensus 333 iVLYRGknY 341 (715)
+||||++.-
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999843
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=2.5e-26 Score=207.45 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHhhhcCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 005091 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332 (715)
Q Consensus 253 ~Lt~kErr~LR~lA~~Lkp~v~IGK~GlTd~Vv~~I~~awek~ELVKIK~~g~~~~dmk~~ae~Le~kTGg~VVqriG~~ 332 (715)
|||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|++++..+++++|++|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 005091 333 VSLYRGVS 340 (715)
Q Consensus 333 iVLYRGkn 340 (715)
+||||++.
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999986
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.92 E-value=3.7e-25 Score=199.76 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHhccCCCCeEEeCCCCchHHHHHHHHHHHHhcCeeEEEEcCCCChhhHHHHHHHHHHHhCCeEEEeeCC
Q 005091 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557 (715)
Q Consensus 478 ~LT~kEr~~LRklAh~LkPvv~LGknGvtdgvi~~I~~awekhELIKIkik~g~~~~~~~~mAeeL~~~TGg~LVq~iG~ 557 (715)
|||++|++|||++||+|+|+|+||++|+|++|+++|+.+|++||||||+|.+ ++..+++++|++|++.|||++||+||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~-~~~~d~~e~a~~la~~t~a~vVq~IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQ-NNFDDKKELAETLSEATRSELVQVIGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECC-CCHHHHHHHHHHHHHHHTEEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeC-CCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 7999999999999999999999999999999999999999999999999976 678999999999999999999999999
Q ss_pred EEEEEcCCC
Q 005091 558 FLVFYRGKN 566 (715)
Q Consensus 558 ~IILYRgkn 566 (715)
++||||+++
T Consensus 80 ~~VLYR~~~ 88 (104)
T 1rq8_A 80 MIVIYRESK 88 (104)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999986
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.92 E-value=3.1e-25 Score=198.37 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHhccCCCCeEEeCCCCchHHHHHHHHHHHHhcCeeEEEEcCCCChhhHHHHHHHHHHHhCCeEEEeeCC
Q 005091 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 557 (715)
Q Consensus 478 ~LT~kEr~~LRklAh~LkPvv~LGknGvtdgvi~~I~~awekhELIKIkik~g~~~~~~~~mAeeL~~~TGg~LVq~iG~ 557 (715)
.||++|++|||++||+|+|+|+||++|+|++|+++|+.+|++||||||+|.+ ++.++++++|++|++.|||++||+||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~-~~~~~~~e~a~~la~~t~a~~Vq~IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAG-ADRETKQLIINAIVRETKAAQVQTIGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETT-CCHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeC-CCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999999976 678999999999999999999999999
Q ss_pred EEEEEcCCCC
Q 005091 558 FLVFYRGKNF 567 (715)
Q Consensus 558 ~IILYRgkn~ 567 (715)
++||||+++.
T Consensus 81 ~~vLyR~~~~ 90 (98)
T 1jo0_A 81 ILVLYRPSEE 90 (98)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEccCCC
Confidence 9999999865
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=71.34 E-value=9.7 Score=31.84 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=43.4
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEeeCCCCCCch
Q 005091 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVPS 345 (715)
Q Consensus 296 ELVKIK~~g~~~~dmk~~ae~Le~kTGg~VVqri---G~~iVLYRGknY~~p~ 345 (715)
++|+.|--...+.+.++++.+++-.-.--+|-++ |.+-|+||.++..+.-
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yGl 53 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGL 53 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEEE
Confidence 5788888888899999999999988777788887 7899999999988753
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=58.00 E-value=10 Score=30.84 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=38.1
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEeeCCCCCCc
Q 005091 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVP 344 (715)
Q Consensus 296 ELVKIK~~g~~~~dmk~~ae~Le~kTGg~VVqri---G~~iVLYRGknY~~p 344 (715)
++|+.|-......+.++++.+++-.-.--+|-++ |.+-|+||.++..+.
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yG 52 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYG 52 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 4566666677788899999999988777888877 789999999988764
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=53.57 E-value=12 Score=31.40 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=41.7
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEeeCCCCCCch
Q 005091 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVPS 345 (715)
Q Consensus 296 ELVKIK~~g~~~~dmk~~ae~Le~kTGg~VVqri---G~~iVLYRGknY~~p~ 345 (715)
++|+.|--...+.+.++++.+++-.-.--+|-++ |.+-|+||.++..+.-
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yGl 54 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGL 54 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEEE
Confidence 4677777777888999999999987777778777 7899999999988753
No 8
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.23 E-value=1.9e+02 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005091 646 RRHAYLVQKLEKKLARAERKLLRAERALSKVEES 679 (715)
Q Consensus 646 ~r~~~~~k~~e~kL~~a~~K~~kaek~L~kle~~ 679 (715)
++++++|-++|.--+-+.+.|..-|+.++.||..
T Consensus 20 aklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4566677778887777778888888888888764
No 9
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=20.62 E-value=37 Score=28.60 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.1
Q ss_pred HHHHHHhCCeEEEEECc
Q 005091 315 EILERKTGGLVIWRSGT 331 (715)
Q Consensus 315 e~Le~kTGg~VVqriG~ 331 (715)
..+-++.|+.+|||||.
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhceeEEeecc
Confidence 45567899999999996
No 10
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=19.63 E-value=1.2e+02 Score=30.12 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCCeEEeCCCCchHHHHHHHHHHHHhc-----CeeEEEEcCCCChhhHHHHHHHHHH
Q 005091 483 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS-----SIAKIALKRGVQLTTSERMVEDIKK 545 (715)
Q Consensus 483 Er~~LRklAh~LkPvv~LGknGvtdgvi~~I~~awekh-----ELIKIkik~g~~~~~~~~mAeeL~~ 545 (715)
|.-.+.+++.+-+|++.+|.+|.++++++-|+...+.. .+-.|.+ -++.+++.+.|+.
T Consensus 124 E~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~-----~d~~ee~~~~l~~ 186 (216)
T 1ydh_A 124 EMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVS-----APTAKELMEKMEE 186 (216)
T ss_dssp HHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEE-----ESSHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEE-----eCCHHHHHHHHHH
Confidence 55567788889999999999999999999886555321 2223444 1357778887775
Done!