BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005092
(715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 349 bits (895), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 189/340 (55%), Positives = 231/340 (67%), Gaps = 23/340 (6%)
Query: 197 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLT-VHETKLKVDLTEYVEKHEFVFDAVLNE 255
+I V VRKRPLNK+ELAK E D+I S L VHE KLKVDLT+Y+E F FD +E
Sbjct: 52 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 111
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM------------KPLPLKA 303
SN+ VYR T P+V IF+ KATCFAYGQTGSGKT+TM K + A
Sbjct: 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMA 171
Query: 304 SRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEY 362
SRD+ L + YR G +++V+FFEIY GKLFDLL+ + KL + EDGKQQV +VGLQE+
Sbjct: 172 SRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEH 231
Query: 363 KVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422
V+ + + ++I+ AN SSRSHA Q+ ++ A G R+ GK S
Sbjct: 232 LVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKG------RMHGKFS 283
Query: 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 482
+DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VLR
Sbjct: 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 343
Query: 483 DSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLS 521
DSF+G NSRT MI+ ISP CE+TLNTLRYADRVK LS
Sbjct: 344 DSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/339 (54%), Positives = 226/339 (66%), Gaps = 23/339 (6%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLT-VHETKLKVDLTEYVEKHEFVFDAVLNEE 256
I V VRKRPLNK+ELAK E D+I S L VHE KLKVDLT+Y+E F FD +E
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM------------KPLPLKAS 304
SN+ VYR T P+V IF+ KATCFAYGQTGSGKT+TM K + AS
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 305 RDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYK 363
RD+ L + YR+ +++V+FFEIY GK+FDLL+ + KL + ED +QQV +VGLQEY
Sbjct: 121 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYL 180
Query: 364 VSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 423
V+ + + ++I AN SSRSHA Q+ ++ RL GK S
Sbjct: 181 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--------RLHGKFSL 232
Query: 424 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRD 483
+DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VLRD
Sbjct: 233 VDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRD 292
Query: 484 SFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLS 521
SF+G NSRT MI+ ISP CE+TLNTLRYADRVK LS
Sbjct: 293 SFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 227/340 (66%), Gaps = 23/340 (6%)
Query: 197 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLT-VHETKLKVDLTEYVEKHEFVFDAVLNE 255
+I V VRKRPLNK+ELAK E D+I S L VHE KLKVDLT+Y+E F FD +E
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 131
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM------------KPLPLKA 303
SN+ VYR T P+V IF+ KATCFAYGQTGSGKT+TM K + A
Sbjct: 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 191
Query: 304 SRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEY 362
SRD+ L + YR+ +++V+FFEIY GK+FDLL+ + KL + ED +QQV +VGLQEY
Sbjct: 192 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEY 251
Query: 363 KVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422
V+ + + ++I AN SSRSHA Q+ ++ RL GK S
Sbjct: 252 LVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--------RLHGKFS 303
Query: 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 482
+DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VLR
Sbjct: 304 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 363
Query: 483 DSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLS 521
DSF+G NSRT MI+ ISP CE+TLNTLRYADRVK LS
Sbjct: 364 DSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/339 (52%), Positives = 222/339 (65%), Gaps = 23/339 (6%)
Query: 197 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLT-VHETKLKVDLTEYVEKHEFVFDAVLNE 255
+I V VRKRPLNKKE + D+I S + VHE K KVDLT Y+E F FD ++
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDD 149
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM------------KPLPLKA 303
N+ VYR T P+V IF+R ATCFAYGQTGSGKT+TM K + A
Sbjct: 150 SAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALA 209
Query: 304 SRDI-LRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEY 362
+RD+ L L Y+ Q++ +FFEIY GK+FDLL+ + KL + EDGKQQV +VGLQE
Sbjct: 210 ARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQER 269
Query: 363 KVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422
+V VE + +LI+ AN SSRSHA+ Q+ ++R +L GK S
Sbjct: 270 EVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--------KLHGKFS 321
Query: 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 482
IDLAG+ERGADT+ D+QTR+EGAEINKSLLALKECIRAL ++ H PFR SKLT+VLR
Sbjct: 322 LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLR 381
Query: 483 DSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
DSF+G NSRT MI+ ISP CE+TLNTLRYA+RVK L
Sbjct: 382 DSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 292 bits (747), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 162/343 (47%), Positives = 226/343 (65%), Gaps = 27/343 (7%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEE 256
IKVVVRKRPL++ E K + DII +N +L + E + KVD+T+Y+E+HEF+ D V ++
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 257 VSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM---KP--------LPLKAS 304
V N VY T++P++ +++ +CFAYGQTGSGKTYTM +P + A+
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 305 RDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKV 364
DI ++ + +F+SF+EIY GKL+DLL RK + E+GK++V + ++ K+
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVV---KDLKI 178
Query: 365 SDVETIKELIEKXXXXXXXXXXXAN---EESSRSHAILQLAIKRSADGSESKPPRLVGKL 421
V T +ELI K N +ESSRSHAIL + +K + +GK+
Sbjct: 179 LRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTS------LGKI 232
Query: 422 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVL 481
+FIDLAGSERGADT +KQT+ +GA IN+SLLALKECIRA+D+D+ HIPFR S+LT+VL
Sbjct: 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVL 292
Query: 482 RDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGN 524
RD FVG S+++MI+ ISP+ CCE TLNTLRY+ RVK +KGN
Sbjct: 293 RDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK--NKGN 333
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 194/339 (57%), Gaps = 13/339 (3%)
Query: 198 IKVVVRKRPLNKKELAKNEEDII--ETYSNSLTVHETKLKVDLTEYVE-KHEFVFDAVLN 254
IKV+VR RPLN +E +N +II + S + V + + T+ + F FDAV +
Sbjct: 6 IKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYD 65
Query: 255 EEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPLPLKAS-RDIL 308
+ N +++ + +P++ + + +T FAYGQTG+GKT+TM +P + S + +
Sbjct: 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLF 125
Query: 309 RLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVE 368
++ + +Q F + S+ E+Y ++ DL+ + KL ++ED + + + GL ++V+
Sbjct: 126 DAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAA 185
Query: 369 TIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 428
+ L++K N+ SSRSH+I + I+ S + E+K VGKL+ +DLAG
Sbjct: 186 ELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS-EVIENKEVIRVGKLNLVDLAG 244
Query: 429 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGN 488
SER + T +T +EGA+IN SL AL I L HIP+R SKLT +L+DS GN
Sbjct: 245 SERQSKTGATG-ETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGN 303
Query: 489 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPK 527
S+T+M + ISP+S + T++TLRYADR K + N P+
Sbjct: 304 SKTLMCANISPASTNYDETMSTLRYADRAKQIK--NKPR 340
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 186/344 (54%), Gaps = 22/344 (6%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLK-VDLTEYVEKHEFVFDAVLNEE 256
++VVVR RP+N KE A + + +++ + + + +K T + F FDAV +
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDV---DVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWN 79
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL---PLKASRDIL----- 308
E+Y ET P+V + Q T FAYGQTG+GKTYTM+ + P K R ++
Sbjct: 80 AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEK--RGVIPNSFD 137
Query: 309 RLMHHTYRSQGFQLFV--SFFEIYGGKLFDLLS--DRKKLCMREDGKQQVCIVGLQEYKV 364
+ H RSQ Q V S+ EIY ++ DLLS K+L ++E V + L +
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVT 197
Query: 365 SDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 424
V+ I+ ++ NE SSRSHAI + I+ S G + + VGKL+ +
Sbjct: 198 KSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLV 257
Query: 425 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRD 483
DLAGSER A T ++ + E +IN SL AL I AL D HIP+R SKLT +L+D
Sbjct: 258 DLAGSERQAKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQD 316
Query: 484 SFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPK 527
S GN++TVM++ + P+S E TL TLRYA+R K++ N P+
Sbjct: 317 SLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK--NKPR 358
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 35/346 (10%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
A ++V +R RPL KEL + + + L V +V L ++H F F VL E
Sbjct: 11 APVRVALRVRPLLPKEL-------LHGHQSCLQVEPGLGRVTLGR--DRH-FGFHVVLAE 60
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTY 315
+ + VY+ V+P++ F+ AT FAYGQTGSGKTYTM + + + + +
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRA 120
Query: 316 RSQGFQLF-----------VSFFEIYGGKLFDLL---SDRKKLCMREDGKQQVCIVGLQE 361
++ F+L VS+ E+Y + DLL + + + +RED + V + G++E
Sbjct: 121 MAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 362 YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPR----- 416
V ++ + L+E N SSRSH + + +++ + S+ PR
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGR-APSRLPRPAPGQ 239
Query: 417 -LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPF 472
LV K F+DLAGSER T ++ + E +IN SLLAL I AL + Q HIP+
Sbjct: 240 LLVSKFHFVDLAGSERVLKTGSTGERLK-ESIQINSSLLALGNVISALGDPQRRGSHIPY 298
Query: 473 RGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVK 518
R SK+T +L+DS GN++TVMI+C+SPSS + TLNTL YA R +
Sbjct: 299 RDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 177/348 (50%), Gaps = 29/348 (8%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKL---------KVDLTEYVEKH--- 245
+KVVVR RP N KE A ++ + V + K K ++K
Sbjct: 12 MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKD 71
Query: 246 -EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKAS 304
+FVFDAV +E + EV+ T +PI+ T AYG TG+GKT+TM L
Sbjct: 72 LKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM--LGSADE 129
Query: 305 RDILRL-MHHTYRSQG-------FQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCI 356
++ L M H Y+ VS+ E+Y ++ DLL + L +RED ++ V +
Sbjct: 130 PGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVV 189
Query: 357 VGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPR 416
GL ++ E I L++ N SSRSHA+ Q+ +++ +
Sbjct: 190 HGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNV 249
Query: 417 LVGKLSFIDLAGSERGADTTDNDKQTR-MEGAEINKSLLALKECIRALDNDQ---GHIPF 472
+ K+S IDLAGSER + T K TR +EG IN+SLLAL I AL + + HIP+
Sbjct: 250 RIAKMSLIDLAGSERAS--TSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPY 307
Query: 473 RGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
R SKLT +L+DS GN +T+MI+ +SPSS + T NTL+YA+R K +
Sbjct: 308 RNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 182/346 (52%), Gaps = 35/346 (10%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
A ++V +R RPL KEL + + + L V +V L ++H F F VL E
Sbjct: 11 APVRVALRVRPLLPKEL-------LHGHQSCLQVEPGLGRVTLGR--DRH-FGFHVVLAE 60
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTY 315
+ + VY+ V+P++ F+ AT FAYGQTGSGKTYTM + + + + +
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRA 120
Query: 316 RSQGFQLF-----------VSFFEIYGGKLFDLL---SDRKKLCMREDGKQQVCIVGLQE 361
++ F+L VS+ E+Y + DLL + + + +RED + V + G++E
Sbjct: 121 MAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 362 YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPR----- 416
V ++ + L+E N SSRSH + + +K+ + S+ PR
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGR-APSRLPRPAPGQ 239
Query: 417 -LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPF 472
LV K F+DLAGSER T + + R E +IN SLLAL I AL + Q +IP+
Sbjct: 240 LLVSKFHFVDLAGSER-VLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPY 298
Query: 473 RGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVK 518
R SK+T +L+DS GN++TVMI+C+SPSS + TLNTL YA R +
Sbjct: 299 RDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/351 (35%), Positives = 178/351 (50%), Gaps = 38/351 (10%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+VVVR RP N E + I+E S+ + + L + + + FD V
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVE--SDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLKA 303
+VYR V PI+ + AT FAYGQTG+GKT+TM+ PL
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPL---- 132
Query: 304 SRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GKQ 352
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K+
Sbjct: 133 AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 353 QVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI---KRSADG 409
V I GL+E V + + + +++EK N SSRSH++ + I + + DG
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 410 SESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGH 469
E +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H
Sbjct: 253 EELVK---IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPH 308
Query: 470 IPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+P+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 309 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 189/365 (51%), Gaps = 40/365 (10%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVE-KHEFVFDAVLNEE 256
+KVV R RPL++KE A E I+ + + + + L+ E F FDAV +
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQIL---TMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDAS 79
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKAS-RDIL-----RL 310
++Y ETV P++ + Q T FAYGQTG+GKTYTM+ ++ R ++ +
Sbjct: 80 SKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHI 139
Query: 311 MHHTYRSQGFQLFV--SFFEIYGGKLFDLLSDR--KKLCMREDGKQQVCIVGLQEYKVSD 366
H RSQ Q V S+ EIY ++ DLLS K+L ++E+ + V I L + +
Sbjct: 140 FTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKN 199
Query: 367 VETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDL 426
V+ I+ ++ NE SSRSHAI + ++ S GS+ + VGKL+ +DL
Sbjct: 200 VKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDL 259
Query: 427 AGSER----------GADTTDNDKQTRM-------------EGAEINKSLLALKECIRAL 463
AGSER GA T + E ++IN SL AL I AL
Sbjct: 260 AGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAAL 319
Query: 464 -DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSK 522
N HIP+R SKLT +L+DS GN++T+M++ + P+S + +L+TLR+A+R K++
Sbjct: 320 AGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIK- 378
Query: 523 GNNPK 527
N P+
Sbjct: 379 -NKPR 382
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 168 bits (426), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 173/347 (49%), Gaps = 30/347 (8%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------------PLPLKAS 304
+VYR V PI+ + T FAYGQTG+GKT+TM+ +PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGI 135
Query: 305 RDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GKQQ 353
I R +H + F + VS EIY +LFDLL SD ++L M +D K+
Sbjct: 136 --IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRG 193
Query: 354 VCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESK 413
V I GL+E V + + + +++EK N SSRSH++ + I + +
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 414 PPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFR 473
+GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+P+R
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 474 GSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 197/388 (50%), Gaps = 24/388 (6%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
KI+V R RPLN+KE ++ E+ ++ T + TV E K D ++ + ++D V +
Sbjct: 13 GKIRVYCRIRPLNEKESSEREKQMLTTV-DEFTV-EHPWKDD-----KRKQHIYDRVFDM 65
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILR 309
S D+++ +T + +V FAYGQTGSGKT+T+ L +A++++
Sbjct: 66 RASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 310 LMHHTYRSQGFQLFVSFFEIYGGKLFDLL----SDRKKLCMREDGKQQVCIVGLQEYKVS 365
++ + F L E+Y L DLL + R KL +++D K V + + +S
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 184
Query: 366 DVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 425
+E ++ ++E+ NEESSRSH IL + I+ S D R GKLSF+D
Sbjct: 185 TLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIE-SIDLQTQSAAR--GKLSFVD 241
Query: 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
LAGSER + Q + E INKSL AL + I AL + HIP+R KLT ++ DS
Sbjct: 242 LAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSL 300
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPL 545
GN++T+M +SP+ + T N+L YA RV+++ N+P K I S + + A
Sbjct: 301 GGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIV--NDPSKHISSKEMVRLKKLVAYW 358
Query: 546 SSALPTTSPYEDDTDAWPEQNERDDFDA 573
ED D ++ +D+ D+
Sbjct: 359 KEQAGKKGEEEDLVDIEEDRTRKDEADS 386
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 173/349 (49%), Gaps = 34/349 (9%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLK 302
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 132
Query: 303 ASRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GK 351
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K
Sbjct: 133 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 352 QQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSE 411
+ V I GL+E V + + + +++EK N SSRSH++ + I +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIP 471
+ +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+P
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVP 310
Query: 472 FRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 311 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 173/349 (49%), Gaps = 34/349 (9%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 77
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLK 302
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 78 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 134
Query: 303 ASRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GK 351
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K
Sbjct: 135 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 193
Query: 352 QQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSE 411
+ V I GL+E V + + + +++EK N SSRSH++ + I +
Sbjct: 194 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 253
Query: 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIP 471
+ +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+P
Sbjct: 254 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVP 312
Query: 472 FRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 313 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 173/349 (49%), Gaps = 34/349 (9%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLK 302
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 132
Query: 303 ASRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GK 351
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K
Sbjct: 133 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 352 QQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSE 411
+ V I GL+E V + + + +++EK N SSRSH++ + I +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIP 471
+ +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+P
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVP 310
Query: 472 FRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 311 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 176/352 (50%), Gaps = 40/352 (11%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 74
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLK 302
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 75 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 131
Query: 303 ASRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GK 351
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K
Sbjct: 132 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 190
Query: 352 QQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI---KRSAD 408
+ V I GL+E V + + + +++EK N SSRSH++ + I + + D
Sbjct: 191 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 250
Query: 409 GSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG 468
G E +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL
Sbjct: 251 GEELVK---IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTP 306
Query: 469 HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
H+P+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 307 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 172/347 (49%), Gaps = 30/347 (8%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL------------PLKAS 304
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGI 135
Query: 305 RDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GKQQ 353
I R +H + F + VS EIY +LFDLL SD ++L M +D K+
Sbjct: 136 --IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRG 193
Query: 354 VCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESK 413
V I GL+E V + + + +++EK N SSRSH++ + I + +
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 414 PPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFR 473
+GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+P+R
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 474 GSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 173/349 (49%), Gaps = 34/349 (9%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 66
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLK 302
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 123
Query: 303 ASRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GK 351
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K
Sbjct: 124 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 182
Query: 352 QQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSE 411
+ V I GL+E V + + + +++EK N SSRSH++ + I +
Sbjct: 183 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242
Query: 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIP 471
+ +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+P
Sbjct: 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVP 301
Query: 472 FRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 302 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 176/352 (50%), Gaps = 40/352 (11%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVD-LTEYVEKHEFVFDAVLNEE 256
I+VVVR RP N E + I+E E ++ L + + + FD V
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVEC---DPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS 60
Query: 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK--------------PLPLK 302
+VYR V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 61 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 117
Query: 303 ASRDILRLMHHTYR-----SQGFQLFVSFFEIYGGKLFDLL---SD-RKKLCMRED--GK 351
+ I R +H + F + VS EIY +LFDLL SD ++L M +D K
Sbjct: 118 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 176
Query: 352 QQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI---KRSAD 408
+ V I GL+E V + + + +++EK N SSRSH++ + I + + D
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 236
Query: 409 GSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG 468
G E +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL
Sbjct: 237 GEELVK---IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTP 292
Query: 469 HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
H+P+R SKLT +L+DS G +RT +I+ ISP+S E TL+TL YA R K++
Sbjct: 293 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 169/348 (48%), Gaps = 36/348 (10%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+V VR RPLN +E ++++ V L LT+ +F FD E
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTK-----KFTFDRSFGPES 79
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK-------------------- 297
+VY V P++ + T FAYGQTG+GKT+TM
Sbjct: 80 KQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGII 139
Query: 298 PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS--DRKKLCMREDG--KQQ 353
P L D LR+M Y + +S+ E+Y +L DLLS D K+ + +D K
Sbjct: 140 PRALSHLFDELRMMEVEY-----TMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGS 194
Query: 354 VCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESK 413
V I GL+E V + + +L+EK N +SSRSH + + + +G E +
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254
Query: 414 PPRLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPF 472
+GKL+ +DLAGSE N+K R+ E IN+SLL L I AL + H+P+
Sbjct: 255 DMLKIGKLNLVDLAGSE-NVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPY 313
Query: 473 RGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
R SKLT +L++S G ++T +I+ ISP E TL+TL YA R K++
Sbjct: 314 RESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNI 361
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 178/350 (50%), Gaps = 24/350 (6%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
KI+V R RPL +KE+ E + I + H K + ++H ++D V +
Sbjct: 5 GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK-----DDKAKQH--MYDRVFDG 57
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILR 309
+ D+V+ +T + +V FAYGQTGSGKT+T+ L +A ++ R
Sbjct: 58 NATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 116
Query: 310 LMHHTYRSQGFQLFVSFFEIYGGKLFDLL----SDRKKLCMREDGKQQVCIVGLQEYKVS 365
+M F L E+Y L DLL + R KL +++D K V + + +S
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 176
Query: 366 DVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 425
E +K +I++ NE+SSRSH I+ + I+ + +++ GKLSF+D
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIAR---GKLSFVD 233
Query: 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
LAGSER + Q + E INKSL AL + I AL + HIP+R KLT ++ DS
Sbjct: 234 LAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSL 292
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTI 535
GN++T+M ISP+ + T N+L YA RV+S+ N+P K++ S +
Sbjct: 293 GGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV--NDPSKNVSSKEV 340
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 177/349 (50%), Gaps = 27/349 (7%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTE-------YVEKHEF- 247
+K+KV VR RP+N++E + + +++ +N + ++ + + + H F
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 248 -VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KP--L 299
+ ++V + D V++ E I+ F A FAYGQTGSGK+YTM +P +
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLI 120
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL---SDRKKLCMREDGKQQVCI 356
P S R Q F++ VS+ EIY K+ DLL R+ L +RE +
Sbjct: 121 PRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYV 180
Query: 357 VGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSA-DGSESKPP 415
GL + V+ + I+ L+ + NEESSRSHA+ ++ + + D
Sbjct: 181 DGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240
Query: 416 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL------DNDQGH 469
VGKLS +DLAGSER T + + EG+ INKSL L I AL N
Sbjct: 241 EKVGKLSLVDLAGSERATKTGAAGDRLK-EGSNINKSLTTLGLVISALADQSAGKNKNKF 299
Query: 470 IPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVK 518
+P+R S LT +L+DS GNS+T M++ +SP++ + TL+TLRYADR K
Sbjct: 300 VPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 177/342 (51%), Gaps = 26/342 (7%)
Query: 192 ASSVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDA 251
+SS IKVV R RP N+ E+ + I+ T+ T VD E + F FD
Sbjct: 2 SSSANSIKVVARFRPQNRVEIESGGQPIV-TFQGPDTC-----TVDSKE--AQGSFTFDR 53
Query: 252 VLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKA--SRDIL- 308
V + +++ +++P V I T FAYGQTG+GK+YTM + R ++
Sbjct: 54 VFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIP 113
Query: 309 RLMHHTYRSQ-------GFQLFVSFFEIYGGKLFDLLSDRK-KLCMREDGKQQVCIVGLQ 360
R++ + S + + VS+ EIY ++ DLL+ + L + E+ + V + GL
Sbjct: 114 RIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLL 173
Query: 361 EYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI-KRSADGSESKPPRLVG 419
E VS V+ + E++ + N+ESSRSH+I + I +++ + +K G
Sbjct: 174 EIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKS----G 229
Query: 420 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLT 478
+L +DLAGSE+ T QT E +INKSL AL I AL D H+P+R SKLT
Sbjct: 230 QLFLVDLAGSEK-VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 288
Query: 479 EVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+L++S GNSRT +I SPSS TL+TLR+ R KS+
Sbjct: 289 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 330
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 181/353 (51%), Gaps = 30/353 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
A +KV VR RP N +E++++ + II+ ++ T+ K + + + E
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 79
Query: 256 EV---SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDIL---- 308
++ S +VYR+ E ++ F+ FAYGQTG+GK+YTM K + I+
Sbjct: 80 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 139
Query: 309 -----RLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK--LCMREDGKQQVCIVGLQE 361
R+ T + + + VS+ EIY ++ DLL+ + K L +RE + L +
Sbjct: 140 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSK 199
Query: 362 YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI-KRSADGSESKPPRLVGK 420
V+ I++L++ NE SSRSHA+ + ++ D + V K
Sbjct: 200 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSK 259
Query: 421 LSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG---------- 468
+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 260 ISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 317
Query: 469 -HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
IP+R S LT +LR++ GNSRT M++ +SP+ + TL+TLRYADR K +
Sbjct: 318 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 165/336 (49%), Gaps = 28/336 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
IKV+ R RPLN+ E+ + ++ I K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYI------------AKFQGEDTVVIASKPYAFDRVFQS 54
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP----------LPLKASR 305
S ++VY + + IV + + T FAYGQT SGKT+TM+ +P + +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP-RIVQ 113
Query: 306 DILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS-DRKKLCMREDGKQQVCIVGLQEYKV 364
DI ++ + F + VS+FEIY K+ DLL + L + ED + + G E V
Sbjct: 114 DIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 365 SDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 424
+ + + I++ NE SSRSH+I + +K+ +E K L GKL +
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK---LSGKLYLV 230
Query: 425 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS 484
DLAGSE+ T + E INKSL AL I AL ++P+R SK+T +L+DS
Sbjct: 231 DLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS 289
Query: 485 FVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
GN RT ++ C SPSS T +TL + R K++
Sbjct: 290 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 165/336 (49%), Gaps = 28/336 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
IKV+ R RPLN+ E+ + ++ I K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYI------------AKFQGEDTVVIASKPYAFDRVFQS 54
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP----------LPLKASR 305
S ++VY + + IV + + T FAYGQT SGKT+TM+ +P + +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP-RIVQ 113
Query: 306 DILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS-DRKKLCMREDGKQQVCIVGLQEYKV 364
DI ++ + F + VS+FEIY K+ DLL + L + ED + + G E V
Sbjct: 114 DIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 365 SDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 424
+ + + I++ NE SSRSH+I + +K+ +E K L GKL +
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK---LSGKLYLV 230
Query: 425 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS 484
DLAGSE+ T + E INKSL AL I AL ++P+R SK+T +L+DS
Sbjct: 231 DLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS 289
Query: 485 FVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
GN RT ++ C SPSS T +TL + R K++
Sbjct: 290 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 174/338 (51%), Gaps = 32/338 (9%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
IKVV R RPLN E + +++ +N V E + + Y+ FD V
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNN---VEENCISIAGKVYL------FDKVFKPNA 63
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL---PLKAS---RDILRLM 311
S ++VY E + IV + T FAYGQT SGKT+TM+ + +K R + +
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIF 123
Query: 312 HHTYRSQ---GFQLFVSFFEIYGGKLFDLLSDRK-KLCMREDGKQQVCIVGLQEYKVSDV 367
+H Y + F + VS++EIY K+ DLL K L + ED + + G E VS
Sbjct: 124 NHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSP 183
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLA 427
E + E+IE+ NE SSRSH++ + +K+ ++ K L GKL +DLA
Sbjct: 184 EDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKK---LSGKLYLVDLA 240
Query: 428 GSER----GADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLR 482
GSE+ GA+ T D E INKSL AL I AL D ++ HIP+R SKLT +L+
Sbjct: 241 GSEKVSKTGAEGTVLD-----EAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQ 295
Query: 483 DSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
+S GN+RT ++ C SP+S T +TL + R K++
Sbjct: 296 ESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTV 333
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 181/353 (51%), Gaps = 30/353 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
A +KV VR RP N +E++++ + II+ ++ T+ K + + + E
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 256 EV---SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDIL---- 308
++ S +VYR+ E ++ F+ FAYGQTG+GK+YTM K + I+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 309 -----RLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK--LCMREDGKQQVCIVGLQE 361
R+ T + + + VS+ EIY ++ DLL+ + K L +RE + L +
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSK 183
Query: 362 YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI-KRSADGSESKPPRLVGK 420
V+ I++L++ NE SSRSHA+ + ++ D + V K
Sbjct: 184 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSK 243
Query: 421 LSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG---------- 468
+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 244 ISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 469 -HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
IP+R S LT +LR++ GNSRT M++ +SP+ + TL+TLRYADR K +
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 181/353 (51%), Gaps = 30/353 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
A +KV VR RP N +E++++ + II+ ++ T+ K + + + E
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 256 EV---SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDIL---- 308
++ S +VYR+ E ++ F+ FAYGQTG+GK+YTM K + I+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 309 -----RLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK--LCMREDGKQQVCIVGLQE 361
R+ T + + + VS+ EIY ++ DLL+ + K L +RE + L +
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSK 183
Query: 362 YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI-KRSADGSESKPPRLVGK 420
V+ I++L++ NE SSRSHA+ + ++ D + V K
Sbjct: 184 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSK 243
Query: 421 LSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG---------- 468
+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 244 ISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 469 -HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
IP+R S LT +LR++ GNSRT M++ +SP+ + TL+TLRYADR K +
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 178/338 (52%), Gaps = 22/338 (6%)
Query: 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVH-ETKLKVDLTEYVEKHEFVFDAV 252
S I+V+ R RP+ K++ E +N++T + + L + F D V
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEA------TNAVTFDADDDSIIHLLHKGKPVSFELDKV 55
Query: 253 LNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLK--ASRDILRL 310
+ + S +V++E V+ +V FAYGQTG+GKTYTM+ ++ L+L
Sbjct: 56 FSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQL 114
Query: 311 MHHTYRSQG----FQLFVSFFEIYGGKLFDLLSD--RKKLCMR--EDGKQQVCIVGLQEY 362
+ + + + + VS EIY L DLL ++KL +R DG Q+ + GL E+
Sbjct: 115 LFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEF 174
Query: 363 KVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422
+V V+ I ++ E NE SSRSHA+L + + R D S R GKL+
Sbjct: 175 QVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTV-RGVDCSTGL--RTTGKLN 231
Query: 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 482
+DLAGSER + + R E INKSL AL + I AL + QGH+PFR SKLT +L+
Sbjct: 232 LVDLAGSERVGKSGAEGSRLR-EAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQ 290
Query: 483 DSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
DS G+S+T+M+ +SP TL +L++A+RV+S+
Sbjct: 291 DSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 181/353 (51%), Gaps = 30/353 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
A +KV VR RP N +E++++ + II+ ++ T+ K + + + E
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 256 EV---SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDIL---- 308
++ S +VYR+ E ++ F+ FAYGQTG+GK+YTM K + I+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 309 -----RLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK--LCMREDGKQQVCIVGLQE 361
R+ T + + + VS+ EIY ++ DLL+ + K L +RE + L +
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSK 183
Query: 362 YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI-KRSADGSESKPPRLVGK 420
V+ I++L++ NE SSRSHA+ + ++ D + V K
Sbjct: 184 LAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSK 243
Query: 421 LSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG---------- 468
+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 244 ISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 469 -HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
IP+R S LT +LR++ GNSRT M++ +SP+ + TL+TLRYADR K +
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 164/336 (48%), Gaps = 28/336 (8%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 255
IKV+ R RPLN+ E+ + ++ + K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYV------------AKFQGEDTVMIASKPYAFDRVFQS 54
Query: 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP----------LPLKASR 305
S ++VY + + IV + + T FAYGQT SGK +TM+ +P + +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIP-RIVQ 113
Query: 306 DILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS-DRKKLCMREDGKQQVCIVGLQEYKV 364
DI ++ + F + VS+FEIY K+ DLL + L + ED + + G E V
Sbjct: 114 DIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 365 SDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 424
+ + + I++ NE SSRSH+I + +K+ +E K L GKL +
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK---LSGKLYLV 230
Query: 425 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS 484
DLAGSE+ T + E INKSL AL I AL ++P+R SK+T +L+DS
Sbjct: 231 DLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS 289
Query: 485 FVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
GN RT ++ C SPSS T +TL + R K++
Sbjct: 290 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 164/334 (49%), Gaps = 25/334 (7%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+V R RP + E +N TY + TV + + + F FD V +
Sbjct: 61 IRVFCRIRPPLESE--ENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-----LKASRDILRLMH 312
S +++ E V P++ FAYGQTGSGKTYTM +P + + D+L
Sbjct: 119 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 177
Query: 313 HTYRSQG--FQLFVSFFEIYGGKLFDLLSDRKK---LCMREDGKQQVCIVGLQEYKVSDV 367
YR+ G +++ +F EIY L+DLLS+ +K + M ++ K + + + E V D
Sbjct: 178 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 237
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQL-AIKRSADGSESKPPRLVGKLSFIDL 426
++ L+ NE SSRSHA+ +L I R A+ E VG ++ +DL
Sbjct: 238 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS----VGSINLVDL 293
Query: 427 AGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
AGSE +T RM E IN+SL L I AL Q HIP+R SKLT +L S
Sbjct: 294 AGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSL 347
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
GNS+T+M +SP C + ++ +LR+A V S
Sbjct: 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 381
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 164/334 (49%), Gaps = 25/334 (7%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+V R RP + E +N TY + TV + + + F FD V +
Sbjct: 55 IRVFCRIRPPLESE--ENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-----LKASRDILRLMH 312
S +++ E V P++ FAYGQTGSGKTYTM +P + + D+L
Sbjct: 113 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 313 HTYRSQG--FQLFVSFFEIYGGKLFDLLSDRKK---LCMREDGKQQVCIVGLQEYKVSDV 367
YR+ G +++ +F EIY L+DLLS+ +K + M ++ K + + + E V D
Sbjct: 172 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 231
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQL-AIKRSADGSESKPPRLVGKLSFIDL 426
++ L+ NE SSRSHA+ +L I R A+ E VG ++ +DL
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS----VGSINLVDL 287
Query: 427 AGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
AGSE +T RM E IN+SL L I AL Q HIP+R SKLT +L S
Sbjct: 288 AGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSL 341
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
GNS+T+M +SP C + ++ +LR+A V S
Sbjct: 342 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 375
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 164/334 (49%), Gaps = 25/334 (7%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+V R RP + E +N TY + TV + + + F FD V +
Sbjct: 69 IRVFCRIRPPLESE--ENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 126
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-----LKASRDILRLMH 312
S +++ E V P++ FAYGQTGSGKTYTM +P + + D+L
Sbjct: 127 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 185
Query: 313 HTYRSQG--FQLFVSFFEIYGGKLFDLLSDRKK---LCMREDGKQQVCIVGLQEYKVSDV 367
YR+ G +++ +F EIY L+DLLS+ +K + M ++ K + + + E V D
Sbjct: 186 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 245
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQL-AIKRSADGSESKPPRLVGKLSFIDL 426
++ L+ NE SSRSHA+ +L I R A+ E VG ++ +DL
Sbjct: 246 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS----VGSINLVDL 301
Query: 427 AGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
AGSE +T RM E IN+SL L I AL Q HIP+R SKLT +L S
Sbjct: 302 AGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSL 355
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
GNS+T+M +SP C + ++ +LR+A V S
Sbjct: 356 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 389
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 164/334 (49%), Gaps = 25/334 (7%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+V R RP + E +N TY + TV + + + F FD V +
Sbjct: 58 IRVFCRIRPPLESE--ENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-----LKASRDILRLMH 312
S +++ E V P++ FAYGQ+GSGKTYTM +P + + D+L
Sbjct: 116 SQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 313 HTYRSQG--FQLFVSFFEIYGGKLFDLLSDRKK---LCMREDGKQQVCIVGLQEYKVSDV 367
YR+ G +++ +F EIY L+DLLS+ +K + M ++ K + + + E V D
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQL-AIKRSADGSESKPPRLVGKLSFIDL 426
++ L+ NE SSRSHA+ +L I R A+ E VG ++ +DL
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS----VGSINLVDL 290
Query: 427 AGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
AGSE +T RM E IN+SL L I AL Q HIP+R SKLT +L S
Sbjct: 291 AGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSL 344
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
GNS+T+M +SP C + ++ +LR+A V S
Sbjct: 345 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 378
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 163/334 (48%), Gaps = 25/334 (7%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
I+V R RP + E +N TY + TV + + + F FD V +
Sbjct: 58 IRVFCRIRPPLESE--ENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-----LKASRDILRLMH 312
S +++ E V P++ FAYGQTGSGKTYTM +P + + D+L
Sbjct: 116 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 313 HTYRSQG--FQLFVSFFEIYGGKLFDLLSDRKK---LCMREDGKQQVCIVGLQEYKVSDV 367
YR+ G +++ +F EIY L+DLLS+ +K + M ++ K + + + E V D
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQL-AIKRSADGSESKPPRLVGKLSFIDL 426
++ L+ NE SSRSHA+ +L I R A+ E VG ++ +DL
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS----VGSINLVDL 290
Query: 427 AGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF 485
AGSE +T RM E I +SL L I AL Q HIP+R SKLT +L S
Sbjct: 291 AGSESPKTST------RMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSL 344
Query: 486 VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
GNS+T+M +SP C + ++ +LR+A V S
Sbjct: 345 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 378
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 166/337 (49%), Gaps = 28/337 (8%)
Query: 198 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 257
+ V VR RPLN +E + E + +++ +++ VD ++ F FD V +
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ----VDGSK-----SFNFDRVFHGNE 56
Query: 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK-------PLPLKASRDILRL 310
+ VY E PI+ Q T FAYGQT SGKTYTM +P +A DI +
Sbjct: 57 TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIP-RAIHDIFQK 115
Query: 311 MHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK---LCMREDGKQQVCIVGLQEYKVSDV 367
+ + + F L VS+ EIY + DLL +K L +RED + V + L E V
Sbjct: 116 IKK-FPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 368 ETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADG--SESKPPRLVGKLSFID 425
E + I K N+ SSRSH I ++ ++ G S + V L+ +D
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234
Query: 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRD 483
LAGSER A T + + EG IN+SL L + I+ L + Q G I +R SKLT +L++
Sbjct: 235 LAGSERAAQTGAAGVRLK-EGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQN 293
Query: 484 SFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
S GN++T +I I+P S + TL L++A K +
Sbjct: 294 SLGGNAKTRIICTITPVS--FDETLTALQFASTAKYM 328
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 163/351 (46%), Gaps = 39/351 (11%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETY-----SNSLTVHETKLKVDLTEYVEKHEFVFD 250
I+V R RP E +IE + + SLT++ + ++ + F FD
Sbjct: 5 GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRI------LSYNFQFD 58
Query: 251 AVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPLPLKASR 305
+ +N E++ E + +V FAYGQTGSGKTYTM +P+ S
Sbjct: 59 MIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSH 117
Query: 306 DILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRK------------KLCMREDG-KQ 352
+ R +++ + EIY + DLL D K K +R D KQ
Sbjct: 118 IFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQ 177
Query: 353 QVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIK-RSADGSE 411
I + K++ + +++K +NE SSRSH++ + I R+ E
Sbjct: 178 GTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGE 237
Query: 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN-DQG-- 468
+ GKL+ +DLAGSER + ++ R E INKSL L + I AL+ D G
Sbjct: 238 TSQ----GKLNLVDLAGSERINSSAVTGERLR-ETQNINKSLSCLGDVIYALNTPDAGKR 292
Query: 469 HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
+IPFR SKLT +L+ S VG+S+T+M I P TLN+LR+A +V S
Sbjct: 293 YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS 343
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 161/338 (47%), Gaps = 24/338 (7%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETY-SNSLTVHETKLKVDLTEYVEKHEFVFDAVLN 254
A+++V VR RP ++ + S SL + + + E ++ FDA
Sbjct: 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEI------ANWRNHQETLKYQFDAFYG 74
Query: 255 EEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP------LKASRDIL 308
E + ++Y +V+PI+ + + A+ AYG TG+GKT+TM P +A D+L
Sbjct: 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLL 134
Query: 309 RLMHHTY---RSQGFQLFVSFFEIYGGKLFDLLSDRK-KLCMREDGKQQVCIVGLQEYKV 364
+L R + +S+ EIY K+ DLL L +RED + + I GL + +
Sbjct: 135 QLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPI 194
Query: 365 SDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPP--RLVGKLS 422
S + N+ SSRSHA+L + + D E P + GKL
Sbjct: 195 SSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKV----DQRERLAPFRQREGKLY 250
Query: 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 482
IDLAGSE T + + + GA IN SL L + + AL+ +P+R SKLT +L+
Sbjct: 251 LIDLAGSEDNRRTGNKGLRLKESGA-INTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQ 309
Query: 483 DSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
DS G++ +++I+ I+P T++ L +A R K +
Sbjct: 310 DSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-KP----LPL 301
F FD + +++ +NDE+++E V ++ FAYGQTGSGKTYTM P +P
Sbjct: 76 FKFDKIFDQQETNDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 302 KASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-------------SDRKKLCMRE 348
+ + R +++ F EIY + DLL +D K +
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHD 194
Query: 349 DGKQQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSAD 408
+ I + + +T+ +++++ ANE SSRSH+I + ++ +
Sbjct: 195 QELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNE 254
Query: 409 GSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG 468
G+ K G L+ +DLAGSER + ++ R E INKSL L + I AL++ G
Sbjct: 255 GTGEKSQ---GILNLVDLAGSERLNSSMVVGERLR-ETQSINKSLSCLGDVIHALNSPDG 310
Query: 469 ---HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRV 517
HIPFR SKLT +L+ S +G+S+T+M ISP++ T+N+LR+A +V
Sbjct: 311 QKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 148/295 (50%), Gaps = 26/295 (8%)
Query: 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPL 299
HEF FD + +++ +N +V++E V +V FAYGQTGSGKT+TM +
Sbjct: 108 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGII 166
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-SDRK---------KLCMRED 349
P S + + +++ F EIY + DLL SD K +R D
Sbjct: 167 PSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 226
Query: 350 GKQQVCIVGLQ-EYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSAD 408
+ + + K+ E ++ +++K +NE SSRSH+I + +
Sbjct: 227 QETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL----S 282
Query: 409 GSESKP-PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---D 464
GS +K G L+ +DLAGSER + + R E INKSL AL + I AL D
Sbjct: 283 GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSALGDVIHALGQPD 341
Query: 465 NDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
+ + HIPFR SKLT +L+ S G+S+T+M ISPSS TLN+LR+A +V S
Sbjct: 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 396
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 162/347 (46%), Gaps = 47/347 (13%)
Query: 192 ASSVAKIKVVVRKRPLNKKELAKNEEDIIE--TYSNSLTVHETKLKVDLTEYVEKHEFVF 249
+ ++ +++ VR+ P ++ L + E +++ +S+ ++ V+++EF F
Sbjct: 18 GAKLSAVRIAVREAPY-RQFLGRREPSVVQFPPWSDGKSL-----------IVDQNEFHF 65
Query: 250 DAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPL-------- 301
D +S DE+Y+ + P+V + + + T AYGQTG+GK+Y+M P
Sbjct: 66 DHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHL 125
Query: 302 ----KASRDILRLMHHTYRSQ----GFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQ 353
+A DI + T R + Q++ SF EIY K FDLL + M Q+
Sbjct: 126 GILPRALGDIFERV--TARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQR 183
Query: 354 VCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESK 413
+ L + +D+ I EL + N SSRSHAI+ + +K S
Sbjct: 184 CTCLPL--HSQADLHHILELGTRNRRVRPTNM---NSNSSRSHAIVTIHVKSKTHHS--- 235
Query: 414 PPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFR 473
+++ +DLAGSE G T ++ R EG IN LL++ + + ++ IP+R
Sbjct: 236 ------RMNIVDLAGSE-GVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 474 GSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
S LT VL+ S S ++CISP TL+TLR+ K L
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 47/346 (13%)
Query: 192 ASSVAKIKVVVRKRPLNKKELAKNEEDIIE--TYSNSLTVHETKLKVDLTEYVEKHEFVF 249
+ ++ +++ VR+ P ++ L + E +++ +S+ ++ V+++EF F
Sbjct: 18 GAKLSAVRIAVREAPY-RQFLGRREPSVVQFPPWSDGKSL-----------IVDQNEFHF 65
Query: 250 DAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPL-------- 301
D +S DE+Y+ + P+V + + + T AYGQTG+GK+Y+M P
Sbjct: 66 DHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHL 125
Query: 302 ----KASRDILRLMHHTYRSQ----GFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQ 353
+A DI + T R + Q++ SF EIY K FDLL + M Q+
Sbjct: 126 GILPRALGDIFERV--TARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQR 183
Query: 354 VCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESK 413
+ L + +D+ I EL + N SSRSHAI+ + +K S
Sbjct: 184 CTCLPL--HSQADLHHILELGTRNRRVRPTNM---NSNSSRSHAIVTIHVKSKTHHS--- 235
Query: 414 PPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFR 473
+++ +DLAGSE G T ++ R EG IN LL++ + + ++ IP+R
Sbjct: 236 ------RMNIVDLAGSE-GVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 474 GSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKS 519
S LT VL+ S S ++CISP TL+TLR+ K+
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 147/303 (48%), Gaps = 42/303 (13%)
Query: 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPL 299
HEF FD + +++ +N +V++E V +V FAYGQTGSGKT+TM +
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 121
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-SDRKKLCMREDGKQQVCIVG 358
P S + + +++ F EIY + DLL SD +ED +G
Sbjct: 122 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTS-----IG 173
Query: 359 LQE------------------YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQ 400
L+ K+ E ++ +++K +NE SSRSH+I
Sbjct: 174 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 233
Query: 401 LAIKRSADGSESKP-PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKEC 459
+ + GS +K G L+ +DLAGSER + + R E INKSL L +
Sbjct: 234 IHLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDV 288
Query: 460 IRAL---DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADR 516
I AL D+ + HIPFR SKLT +L+ S G+S+T+M ISPSS TLN+LR+A +
Sbjct: 289 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
Query: 517 VKS 519
V S
Sbjct: 349 VNS 351
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 147/303 (48%), Gaps = 42/303 (13%)
Query: 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPL 299
HEF FD + +++ +N +V++E V +V FAYGQTGSGKT+TM +
Sbjct: 51 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 109
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-SDRKKLCMREDGKQQVCIVG 358
P S + + +++ F EIY + DLL SD +ED +G
Sbjct: 110 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTS-----IG 161
Query: 359 LQE------------------YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQ 400
L+ K+ E ++ +++K +NE SSRSH+I
Sbjct: 162 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 221
Query: 401 LAIKRSADGSESKP-PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKEC 459
+ + GS +K G L+ +DLAGSER + + R E INKSL L +
Sbjct: 222 IHLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDV 276
Query: 460 IRAL---DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADR 516
I AL D+ + HIPFR SKLT +L+ S G+S+T+M ISPSS TLN+LR+A +
Sbjct: 277 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
Query: 517 VKS 519
V S
Sbjct: 337 VNS 339
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 146/303 (48%), Gaps = 42/303 (13%)
Query: 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPL 299
HEF FD + +++ +N +V++E V +V FAYGQTGSGKT+TM +
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 110
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-SDRKKLCMREDGKQQVCIVG 358
P S + + +++ F EIY + DLL SD +ED +G
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTS-----IG 162
Query: 359 LQE------------------YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQ 400
L+ K+ E ++ +++K +NE SSRSH+I
Sbjct: 163 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 222
Query: 401 LAIKRSADGSESKP-PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKEC 459
+ + GS +K G L+ +DLAGS R + + R E INKSL L +
Sbjct: 223 IHLS----GSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLR-ETQNINKSLSCLGDV 277
Query: 460 IRAL---DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADR 516
I AL D+ + HIPFR SKLT +L+ S G+S+T+M ISPSS TLN+LR+A +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 517 VKS 519
V S
Sbjct: 338 VNS 340
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 155/321 (48%), Gaps = 30/321 (9%)
Query: 217 EDIIETYSNSLTVHETKLKVDLTEYVEKH----EFVFDAVLNEEVSNDEVYRETVEPIVP 272
EDII+ + E+K ++ +T + + F+FD + E SND V+ E + ++
Sbjct: 398 EDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE-LSQLIQ 456
Query: 273 IIFQRTKATCFAYGQTGSGKTYTMK-------PLPLK-ASRDILRLMHHTYRSQGFQLFV 324
T FAYGQTGSGKT+TM PL LK DI L + +G+ V
Sbjct: 457 CSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEEL-----KEKGWSYTV 511
Query: 325 --SFFEIYGGKLFDLLSDR-----KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKX 377
F EIY + DLL+ + K +D + + + + E ++ +
Sbjct: 512 RGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQA 571
Query: 378 XXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTD 437
+N+ SSRSH+I + ++ ++ G L+ IDLAGSER ++
Sbjct: 572 NKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESS---YGTLNLIDLAGSERLNNSRA 628
Query: 438 NDKQTRMEGAEINKSLLALKECIRALD-NDQGHIPFRGSKLTEVLRDSFVGNSRTVMISC 496
+ + E INKSL L + I +L+ D H+P+R SKLT +L+ S GNS+T+M
Sbjct: 629 EGDRLK-ETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVN 687
Query: 497 ISPSSGCCEHTLNTLRYADRV 517
ISP + T+N+LR+A +V
Sbjct: 688 ISPLTKDLNETINSLRFATKV 708
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 146/303 (48%), Gaps = 42/303 (13%)
Query: 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPL 299
HEF FD + +++ +N +V++E V +V FAYGQTGSGKT+TM +
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 110
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-SDRKKLCMREDGKQQVCIVG 358
P S + + +++ F EIY + DLL SD +ED +G
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTS-----IG 162
Query: 359 LQE------------------YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQ 400
L+ K+ E ++ +++K +NE SSRSH+I
Sbjct: 163 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 222
Query: 401 LAIKRSADGSESKP-PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKEC 459
+ + GS +K G L+ +DLAGSER + + R E I KSL L +
Sbjct: 223 IHLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNIKKSLSCLGDV 277
Query: 460 IRAL---DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADR 516
I AL D+ + HIPFR SKLT +L+ S G+S+T+M ISPSS TLN+LR+A +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 517 VKS 519
V S
Sbjct: 338 VNS 340
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 146/303 (48%), Gaps = 42/303 (13%)
Query: 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPL 299
HEF FD + +++ +N +V++E V +V FAYGQTGSGKT+TM +
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 110
Query: 300 PLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLL-SDRKKLCMREDGKQQVCIVG 358
P S + + +++ F EIY + DLL SD +ED +G
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTS-----IG 162
Query: 359 LQE------------------YKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQ 400
L+ K+ E ++ +++K +NE SS SH+I
Sbjct: 163 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFI 222
Query: 401 LAIKRSADGSESKP-PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKEC 459
+ + GS +K G L+ +DLAGSER + + R E INKSL L +
Sbjct: 223 IHLS----GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDV 277
Query: 460 IRAL---DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADR 516
I AL D+ + HIPFR SKLT +L+ S G+S+T+M ISPSS TLN+LR+A +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 517 VKS 519
V S
Sbjct: 338 VNS 340
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 162/345 (46%), Gaps = 35/345 (10%)
Query: 197 KIKVVVRKRPLN--KKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHE-----FVF 249
K+ VR +P + E+ + +D S+ +H LK D+ V ++ F
Sbjct: 25 KVHAFVRVKPTDDFAHEMIRYGDD-----KRSIDIH---LKKDIRRGVVNNQQTDWSFKL 76
Query: 250 DAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLK-ASRDIL 308
D VL++ S D VY + +V T YGQTG+GKTYTM R IL
Sbjct: 77 DGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGIL 135
Query: 309 -RLMHHTYR------SQGFQLFVSFFEIYGGKLFDLLS-------DRKKLCMREDGKQQV 354
R + +R + + VS+ EIY LFDLLS + + E+ Q V
Sbjct: 136 PRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN-PQGV 194
Query: 355 CIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKP 414
I GL + S E L+ + N+ SSRSH I + ++ + + S+
Sbjct: 195 FIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR-TLSEE 253
Query: 415 PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFR 473
+ K++ +DLAGSER + ++ Q E INKSL L++ I AL D + HIPFR
Sbjct: 254 KYITSKINLVDLAGSER-LGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFR 312
Query: 474 GSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVK 518
KLT L+DS GN V+++ I + E TL++LR+A R+K
Sbjct: 313 QCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 142/298 (47%), Gaps = 30/298 (10%)
Query: 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP--- 300
+H+F FD V DEV+ E + +V FAYGQTGSGKT+TM+ P
Sbjct: 82 RHDFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 301 LKASRDILRLMHHTYR------SQG--FQLFVSFFEIYGGKLFDLLSD--RK------KL 344
+ I R + H + QG + S+ EIY + DLL+ RK ++
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEI 200
Query: 345 CMREDGKQQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAI- 403
G +++ + + VS + + L+ NE SSRSH++ QL I
Sbjct: 201 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS 260
Query: 404 -KRSADGSESKPPRLVGKLSFIDLAGSER---GADTTDNDKQTRMEGAEINKSLLALKEC 459
+ S+ G + P LS +DLAGSER G +++ E IN SL L
Sbjct: 261 GEHSSRGLQCGAP-----LSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLV 315
Query: 460 IRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRV 517
I AL N + H+P+R SKLT +L++S G+++ +M ISP +LN+LR+A +V
Sbjct: 316 IMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 174/405 (42%), Gaps = 73/405 (18%)
Query: 175 PENNLLKSFAADKEKANASSVAKIKVVVRKRPLNKKELAKNEEDIIE----TYSNSLTVH 230
P ++ SF + AN V +++ + +EL +N E I+E T SL V
Sbjct: 23 PRDDTASSFVSKDPGANVRVVVRVRAFL------PRELERNAECIVEMDPATERTSLLVP 76
Query: 231 ETKLKVDLT-----EYVEKHEFVFDAVLNEEVSNDE-------VYRETVEPIVPIIFQRT 278
+ D +E+ F FD + DE VY E + F+
Sbjct: 77 QETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGY 136
Query: 279 KATCFAYGQTGSGKTYTMKPLPLKAS---RDILRLMHHTYRSQ------GFQLFVSFFEI 329
FAYGQTGSGK+YTM P + R L +Q + + VS+FE+
Sbjct: 137 HTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEV 196
Query: 330 YGGKLFDLLSDRKK------LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKXXXXXXX 383
Y + DLL+ L +RE + + L E V +E I +
Sbjct: 197 YNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTV 256
Query: 384 XXXXANEESSRSHAILQLAIKR------SADGSESKPPRLVGKLSFIDLAGSERGADTTD 437
N+ SSRSHA+ + +K+ + D +E ++ +DLAGSER A +T+
Sbjct: 257 ASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERS-----SRIRLVDLAGSER-AKSTE 310
Query: 438 NDKQTRMEGAEINKSLLALKECIRALDNDQGH----------------------IPFRGS 475
Q EG+ INKSL L I AL + + +P+R S
Sbjct: 311 ATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDS 370
Query: 476 KLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520
LT +L+DS GNS+T MI+CISP+ + TL+TLRYAD+ K +
Sbjct: 371 VLTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRI 413
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 122/248 (49%), Gaps = 28/248 (11%)
Query: 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYV-EKHEFVFDAVLN 254
IKV+ R RPLN+ E+ + ++ I K K + T + + +VFD VL
Sbjct: 6 CSIKVMCRFRPLNEAEILRGDKFI------------PKFKGEETVVIGQGKPYVFDRVLP 53
Query: 255 EEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP----------LPLKAS 304
+ ++VY + IV + + T FAYGQT SGKT+TM+ +P + +
Sbjct: 54 PNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIP-RIA 112
Query: 305 RDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRK-KLCMREDGKQQVCIVGLQEYK 363
DI ++ + F + VS+FEIY K+ DLL K L + ED + + G E
Sbjct: 113 HDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERF 172
Query: 364 VSDVETIKELIEKXXXXXXXXXXXANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 423
VS E + ++I++ NE SSRSH+I + IK+ +E K L GKL
Sbjct: 173 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKK---LSGKLYL 229
Query: 424 IDLAGSER 431
+DLAGSE+
Sbjct: 230 VDLAGSEK 237
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 449 INKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHT 507
INKSL AL I AL + + H+P+R SK+T +L+DS GN RT ++ C SPS T
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 508 LNTLRYADRVKSL 520
+TL + R K++
Sbjct: 64 KSTLMFGQRAKTI 76
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 450 NKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTL 508
NKSL AL I AL + + H+P+R SK+T +L+DS GN RT ++ C SPS T
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 509 NTLRYADRVKSL 520
+TL + R K++
Sbjct: 61 STLMFGQRAKTI 72
>pdb|3TUF|A Chain A, Structure Of The Spoiiq-Spoiiiah Pore Forming Complex
Length = 197
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 588 SGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDNLSALLQE---------EE 638
SG++ P+ QD K + KE G K+S++D SA E ++
Sbjct: 23 SGEVATEKAPAKQDTKEKSGTETEKGKEDGTKGTKDSSADKETSAEASEKGTVVTETADD 82
Query: 639 DLVNAHRKQVEDTMNIVKEEMNLLVEAD 666
DL +R +ED + +EE+N +V +D
Sbjct: 83 DLFTTYRLDLEDARSKEREELNAIVSSD 110
>pdb|2BB3|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin-6y
Methylase (Cbie) From Archaeoglobus Fulgidus
pdb|2BB3|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin-6y
Methylase (Cbie) From Archaeoglobus Fulgidus
Length = 221
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 210 KELAKNEEDIIETYSNSLTVHETKLKVDLTE--YVEKHEFVFDAVLNE 255
+E+A++ E IE +S+ V +LKVDL+E V+ H FDA L E
Sbjct: 109 REIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCHAKDFDAELTE 156
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 264 RETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTY 315
R+ + P+ + F YG TG+GKT +K + K + L H Y
Sbjct: 30 RKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,564,686
Number of Sequences: 62578
Number of extensions: 847012
Number of successful extensions: 1786
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1486
Number of HSP's gapped (non-prelim): 68
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)