Query 005092
Match_columns 715
No_of_seqs 420 out of 1871
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 17:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0246 Kinesin-like protein [ 100.0 1E-102 3E-107 848.0 37.0 601 35-711 34-673 (676)
2 KOG0243 Kinesin-like protein [ 100.0 2.2E-81 4.9E-86 726.6 37.0 449 194-711 47-520 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 3.1E-81 6.8E-86 699.7 24.9 336 194-534 3-350 (574)
4 KOG0245 Kinesin-like protein [ 100.0 5.1E-80 1.1E-84 702.7 22.4 334 195-535 3-363 (1221)
5 cd01370 KISc_KIP3_like Kinesin 100.0 1.1E-77 2.3E-82 650.0 34.4 323 197-520 1-338 (338)
6 cd01367 KISc_KIF2_like Kinesin 100.0 1.2E-76 2.5E-81 638.0 34.2 315 196-518 1-322 (322)
7 PLN03188 kinesin-12 family pro 100.0 3.3E-76 7.2E-81 689.0 38.6 325 189-529 91-443 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 8.1E-76 1.8E-80 635.1 34.1 313 196-520 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.8E-75 3.8E-80 634.3 35.4 316 196-518 1-345 (345)
10 KOG0240 Kinesin (SMY1 subfamil 100.0 1.3E-76 2.8E-81 647.4 26.3 326 194-532 5-343 (607)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.8E-74 1.5E-78 624.4 36.8 328 196-526 1-355 (356)
12 KOG0242 Kinesin-like protein [ 100.0 4.6E-75 9.9E-80 671.5 24.7 325 196-528 6-339 (675)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.3E-72 2.8E-77 609.2 36.1 319 196-520 1-333 (333)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.2E-72 4.8E-77 611.6 36.4 325 196-528 2-351 (352)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 3.5E-72 7.6E-77 602.9 33.8 311 197-520 1-321 (321)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 6.1E-72 1.3E-76 601.9 35.1 312 196-520 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 2.1E-71 4.5E-76 596.5 34.4 306 197-518 1-319 (319)
18 cd01375 KISc_KIF9_like Kinesin 100.0 3.3E-71 7.1E-76 598.5 34.3 315 197-518 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 3.7E-71 8.1E-76 599.3 34.4 312 197-521 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 9.1E-72 2E-76 624.1 28.0 339 194-533 2-364 (1714)
21 cd01366 KISc_C_terminal Kinesi 100.0 3.4E-69 7.3E-74 581.4 36.2 315 195-523 1-329 (329)
22 cd00106 KISc Kinesin motor dom 100.0 1.9E-67 4.2E-72 566.7 36.2 315 197-518 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 4.7E-67 1E-71 565.7 36.5 322 197-526 1-334 (335)
24 KOG0239 Kinesin (KAR3 subfamil 100.0 1E-68 2.3E-73 616.8 24.2 329 193-530 311-650 (670)
25 PF00225 Kinesin: Kinesin moto 100.0 2.8E-68 6.2E-73 574.7 24.9 316 203-520 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 1.1E-64 2.4E-69 565.1 30.0 329 193-526 28-442 (809)
27 KOG0244 Kinesin-like protein [ 100.0 4.1E-61 8.9E-66 550.4 11.9 316 204-534 1-331 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 4.1E-57 8.8E-62 517.2 24.8 315 194-528 20-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.8E-46 3.9E-51 373.9 18.8 173 262-499 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.4 7.4E-07 1.6E-11 103.7 -13.6 251 193-464 302-566 (568)
31 COG0556 UvrB Helicase subunit 96.3 0.0088 1.9E-07 68.1 7.4 85 245-334 3-100 (663)
32 PF00308 Bac_DnaA: Bacterial d 92.6 0.058 1.3E-06 55.6 1.7 51 245-298 3-53 (219)
33 COG2805 PilT Tfp pilus assembl 90.4 0.15 3.3E-06 55.0 2.0 30 267-296 113-142 (353)
34 PRK06893 DNA replication initi 90.0 0.22 4.7E-06 51.6 2.8 48 245-298 11-58 (229)
35 PRK06620 hypothetical protein; 88.2 0.27 5.8E-06 50.6 2.0 50 244-297 10-62 (214)
36 PRK12377 putative replication 86.9 0.47 1E-05 50.1 2.9 50 247-298 71-120 (248)
37 PRK06526 transposase; Provisio 86.8 0.33 7.1E-06 51.4 1.7 42 253-299 77-118 (254)
38 TIGR02928 orc1/cdc6 family rep 86.8 1.1 2.5E-05 48.9 5.9 39 257-296 18-57 (365)
39 PRK14086 dnaA chromosomal repl 86.4 0.37 8.1E-06 56.9 1.9 51 245-298 283-333 (617)
40 PRK08084 DNA replication initi 86.3 0.52 1.1E-05 49.0 2.8 48 245-298 17-64 (235)
41 PRK08116 hypothetical protein; 86.1 0.43 9.4E-06 50.8 2.1 52 245-298 80-133 (268)
42 COG1474 CDC6 Cdc6-related prot 85.9 1.4 3.1E-05 49.1 6.2 49 272-329 34-83 (366)
43 PRK14088 dnaA chromosomal repl 85.2 0.51 1.1E-05 53.8 2.3 51 244-298 99-149 (440)
44 PRK09087 hypothetical protein; 84.8 0.53 1.2E-05 48.9 2.0 48 244-297 15-62 (226)
45 PRK05642 DNA replication initi 84.6 0.65 1.4E-05 48.3 2.6 50 245-298 14-64 (234)
46 PRK07952 DNA replication prote 84.5 0.73 1.6E-05 48.6 2.9 51 246-298 68-118 (244)
47 TIGR00362 DnaA chromosomal rep 84.4 0.63 1.4E-05 52.2 2.6 51 244-297 104-154 (405)
48 PRK06835 DNA replication prote 84.0 0.35 7.5E-06 53.2 0.3 37 260-298 166-202 (329)
49 TIGR00631 uvrb excinuclease AB 83.5 1.5 3.2E-05 52.6 5.3 82 247-333 2-96 (655)
50 COG2804 PulE Type II secretory 83.4 0.57 1.2E-05 53.8 1.7 29 269-297 248-276 (500)
51 PRK00149 dnaA chromosomal repl 83.3 0.72 1.6E-05 52.6 2.4 51 245-298 117-167 (450)
52 TIGR03420 DnaA_homol_Hda DnaA 83.1 0.96 2.1E-05 45.9 3.0 47 245-297 10-56 (226)
53 PF04851 ResIII: Type III rest 83.0 0.72 1.6E-05 44.4 2.0 29 270-298 15-44 (184)
54 PRK14087 dnaA chromosomal repl 82.9 0.73 1.6E-05 52.8 2.3 49 246-297 111-159 (450)
55 cd00009 AAA The AAA+ (ATPases 82.8 0.92 2E-05 41.1 2.5 27 270-296 10-36 (151)
56 PF05673 DUF815: Protein of un 82.6 0.69 1.5E-05 48.8 1.8 124 247-399 24-155 (249)
57 PRK00411 cdc6 cell division co 81.8 1.2 2.6E-05 49.4 3.4 21 276-296 52-72 (394)
58 PRK08903 DnaA regulatory inact 81.4 1.2 2.6E-05 45.6 3.0 49 244-297 12-60 (227)
59 PRK08939 primosomal protein Dn 80.2 0.81 1.8E-05 49.8 1.3 51 247-298 124-175 (306)
60 PRK08181 transposase; Validate 79.8 1.1 2.4E-05 47.8 2.2 22 276-299 105-126 (269)
61 PRK08727 hypothetical protein; 78.3 1.2 2.6E-05 46.2 1.9 47 245-298 14-60 (233)
62 PF05597 Phasin: Poly(hydroxya 77.3 18 0.0004 34.7 9.3 78 627-706 38-127 (132)
63 cd00046 DEXDc DEAD-like helica 77.2 1 2.2E-05 40.4 0.8 17 282-298 3-19 (144)
64 PTZ00112 origin recognition co 76.1 4.1 9E-05 50.2 5.6 21 277-297 779-799 (1164)
65 PF13245 AAA_19: Part of AAA d 76.0 1.5 3.2E-05 37.8 1.5 26 271-297 3-28 (76)
66 COG1484 DnaC DNA replication p 74.9 2.3 5E-05 45.0 2.9 50 246-298 75-124 (254)
67 PF01935 DUF87: Domain of unkn 74.5 1.2 2.6E-05 45.5 0.7 17 281-297 25-41 (229)
68 TIGR02538 type_IV_pilB type IV 74.4 1.5 3.4E-05 51.6 1.6 28 270-297 307-334 (564)
69 PRK10436 hypothetical protein; 74.1 1.7 3.7E-05 50.0 1.7 27 271-297 210-236 (462)
70 TIGR02533 type_II_gspE general 73.8 1.8 4E-05 50.0 2.0 28 270-297 233-260 (486)
71 PRK09183 transposase/IS protei 73.6 2.3 4.9E-05 45.1 2.4 46 249-299 77-122 (259)
72 PRK12422 chromosomal replicati 73.1 2.6 5.5E-05 48.3 2.9 52 244-298 105-160 (445)
73 COG5008 PilU Tfp pilus assembl 73.1 2.4 5.3E-05 45.3 2.4 30 267-296 115-144 (375)
74 PF13401 AAA_22: AAA domain; P 72.8 1.2 2.6E-05 40.9 0.1 18 279-296 4-21 (131)
75 TIGR01420 pilT_fam pilus retra 72.5 2 4.2E-05 47.4 1.7 26 272-297 115-140 (343)
76 PRK06921 hypothetical protein; 72.3 2.6 5.7E-05 44.9 2.6 32 267-298 102-136 (266)
77 PF13604 AAA_30: AAA domain; P 72.1 2 4.4E-05 43.4 1.6 28 270-297 9-36 (196)
78 smart00382 AAA ATPases associa 71.6 1.7 3.6E-05 38.8 0.7 18 280-297 3-20 (148)
79 PF01637 Arch_ATPase: Archaeal 71.5 1.9 4.1E-05 43.1 1.3 30 267-296 8-37 (234)
80 TIGR02525 plasmid_TraJ plasmid 71.5 2.2 4.8E-05 47.7 1.9 20 278-297 148-167 (372)
81 PF12846 AAA_10: AAA-like doma 71.5 1.6 3.4E-05 45.6 0.7 19 279-297 1-19 (304)
82 PF00270 DEAD: DEAD/DEAH box h 71.4 2 4.3E-05 41.0 1.3 25 271-297 8-32 (169)
83 KOG0246 Kinesin-like protein [ 71.3 5.7 0.00012 46.3 5.0 35 628-662 639-673 (676)
84 cd01131 PilT Pilus retraction 70.4 1.8 3.9E-05 43.7 0.8 19 279-297 1-19 (198)
85 TIGR02524 dot_icm_DotB Dot/Icm 70.1 2.4 5.3E-05 47.1 1.8 21 277-297 132-152 (358)
86 COG0593 DnaA ATPase involved i 69.9 2.6 5.7E-05 47.7 2.0 51 244-297 81-131 (408)
87 PF01695 IstB_IS21: IstB-like 69.8 2.7 5.8E-05 42.0 1.9 21 278-298 46-66 (178)
88 PF00437 T2SE: Type II/IV secr 69.5 2.1 4.5E-05 45.1 1.0 18 279-296 127-144 (270)
89 cd01129 PulE-GspE PulE/GspE Th 69.3 2.8 6E-05 44.6 2.0 26 272-297 73-98 (264)
90 COG1222 RPT1 ATP-dependent 26S 69.3 7.6 0.00016 43.3 5.2 117 196-313 93-242 (406)
91 smart00053 DYNc Dynamin, GTPas 68.1 6.1 0.00013 41.6 4.2 54 363-432 85-138 (240)
92 TIGR01837 PHA_granule_1 poly(h 68.0 28 0.0006 32.7 8.1 78 627-706 25-114 (118)
93 KOG0727 26S proteasome regulat 67.6 11 0.00023 40.3 5.7 120 195-314 96-247 (408)
94 PTZ00454 26S protease regulato 67.3 3.1 6.7E-05 47.0 1.9 53 244-296 139-196 (398)
95 TIGR01242 26Sp45 26S proteasom 66.7 6.8 0.00015 43.4 4.4 53 245-297 117-174 (364)
96 cd01382 MYSc_type_VI Myosin mo 66.3 47 0.001 40.5 11.7 21 276-296 88-108 (717)
97 PRK13894 conjugal transfer ATP 65.8 3.5 7.6E-05 45.2 1.9 27 270-297 140-166 (319)
98 KOG0989 Replication factor C, 65.4 4.7 0.0001 43.9 2.7 27 270-296 48-74 (346)
99 PF01580 FtsK_SpoIIIE: FtsK/Sp 65.1 5.2 0.00011 40.2 2.9 17 281-297 40-56 (205)
100 TIGR03015 pepcterm_ATPase puta 64.6 4 8.7E-05 42.5 2.0 25 273-297 37-61 (269)
101 PF13191 AAA_16: AAA ATPase do 64.4 2.9 6.4E-05 40.5 0.9 27 270-296 15-41 (185)
102 PF13118 DUF3972: Protein of u 64.3 40 0.00086 32.2 8.3 60 626-699 65-124 (126)
103 PLN00020 ribulose bisphosphate 64.0 13 0.00027 42.0 5.7 53 244-296 109-165 (413)
104 PRK03992 proteasome-activating 64.0 3.9 8.4E-05 45.9 1.8 51 246-296 127-182 (389)
105 PF05970 PIF1: PIF1-like helic 63.8 4.8 0.00011 44.7 2.6 36 257-296 4-39 (364)
106 PRK12402 replication factor C 63.0 5.2 0.00011 43.1 2.6 42 248-297 13-54 (337)
107 PF13479 AAA_24: AAA domain 62.4 3.6 7.9E-05 42.0 1.2 19 279-297 3-21 (213)
108 cd00124 MYSc Myosin motor doma 62.1 31 0.00068 41.7 9.1 21 276-296 83-103 (679)
109 smart00242 MYSc Myosin. Large 62.0 30 0.00064 41.9 8.9 36 261-296 74-109 (677)
110 PF00004 AAA: ATPase family as 61.5 3 6.4E-05 38.0 0.3 15 282-296 1-15 (132)
111 PF00448 SRP54: SRP54-type pro 61.4 3.1 6.7E-05 42.3 0.4 16 281-296 3-18 (196)
112 PF13086 AAA_11: AAA domain; P 61.2 3.8 8.3E-05 40.9 1.1 17 281-297 19-35 (236)
113 TIGR02782 TrbB_P P-type conjug 61.0 4.1 8.8E-05 44.2 1.3 27 270-297 124-150 (299)
114 cd01378 MYSc_type_I Myosin mot 60.0 34 0.00073 41.5 8.9 21 276-296 83-103 (674)
115 smart00487 DEXDc DEAD-like hel 59.9 5.8 0.00012 37.9 2.0 18 280-297 25-42 (201)
116 PHA02544 44 clamp loader, smal 59.1 5 0.00011 43.1 1.6 22 276-297 39-61 (316)
117 KOG2543 Origin recognition com 58.9 4.3 9.4E-05 45.4 1.0 38 280-331 31-68 (438)
118 KOG0340 ATP-dependent RNA heli 58.6 10 0.00022 42.1 3.8 25 270-296 37-61 (442)
119 PRK12723 flagellar biosynthesi 58.6 8.8 0.00019 43.3 3.4 19 279-297 174-192 (388)
120 cd01384 MYSc_type_XI Myosin mo 58.3 40 0.00086 40.9 9.0 21 276-296 85-105 (674)
121 PHA00729 NTP-binding motif con 58.3 7.1 0.00015 40.8 2.5 32 267-298 5-36 (226)
122 PF13207 AAA_17: AAA domain; P 57.6 4.2 9.2E-05 36.8 0.6 16 281-296 1-16 (121)
123 PRK13833 conjugal transfer pro 57.5 6.7 0.00014 43.2 2.2 17 281-297 146-162 (323)
124 PF05496 RuvB_N: Holliday junc 57.4 12 0.00026 39.2 4.0 43 253-296 23-67 (233)
125 TIGR00635 ruvB Holliday juncti 56.6 6.5 0.00014 42.0 1.9 42 255-297 5-48 (305)
126 TIGR03499 FlhF flagellar biosy 56.6 10 0.00022 40.6 3.4 18 281-298 196-213 (282)
127 cd01130 VirB11-like_ATPase Typ 56.0 6.8 0.00015 39.0 1.8 28 269-297 16-43 (186)
128 cd01377 MYSc_type_II Myosin mo 55.7 63 0.0014 39.3 10.2 21 276-296 88-108 (693)
129 PF02562 PhoH: PhoH-like prote 55.5 7.1 0.00015 40.2 1.9 19 278-296 18-36 (205)
130 PF00910 RNA_helicase: RNA hel 54.9 4.1 8.9E-05 37.0 0.1 16 282-297 1-16 (107)
131 PTZ00361 26 proteosome regulat 54.1 13 0.00028 42.7 3.9 17 281-297 219-235 (438)
132 PF00580 UvrD-helicase: UvrD/R 54.0 5.4 0.00012 41.9 0.8 19 278-296 12-30 (315)
133 PRK11776 ATP-dependent RNA hel 52.8 8.1 0.00018 44.0 2.0 23 272-296 36-58 (460)
134 cd01380 MYSc_type_V Myosin mot 52.7 81 0.0018 38.4 10.5 21 276-296 83-103 (691)
135 cd00268 DEADc DEAD-box helicas 52.4 9.1 0.0002 38.0 2.1 23 272-296 31-53 (203)
136 KOG0335 ATP-dependent RNA heli 52.4 7.9 0.00017 44.6 1.8 58 273-332 107-189 (482)
137 PTZ00424 helicase 45; Provisio 52.0 7.7 0.00017 43.0 1.6 25 270-296 58-82 (401)
138 PF06309 Torsin: Torsin; Inte 52.0 7.8 0.00017 37.0 1.4 19 278-296 51-70 (127)
139 KOG1514 Origin recognition com 51.7 17 0.00037 43.7 4.4 22 276-297 419-440 (767)
140 PF07728 AAA_5: AAA domain (dy 51.5 5.2 0.00011 37.4 0.2 15 282-296 2-16 (139)
141 TIGR02903 spore_lon_C ATP-depe 51.5 8.4 0.00018 46.0 1.9 42 247-296 151-192 (615)
142 PRK13900 type IV secretion sys 51.4 8.9 0.00019 42.3 2.0 28 269-297 151-178 (332)
143 PRK13851 type IV secretion sys 51.3 6.2 0.00014 43.7 0.8 27 270-297 154-180 (344)
144 PRK13342 recombination factor 51.1 8.2 0.00018 43.6 1.7 39 258-297 16-54 (413)
145 PRK06547 hypothetical protein; 50.7 11 0.00025 37.4 2.5 28 269-296 5-32 (172)
146 PF07724 AAA_2: AAA domain (Cd 50.2 6.6 0.00014 39.0 0.7 17 280-296 4-20 (171)
147 COG4962 CpaF Flp pilus assembl 49.6 9 0.0002 42.4 1.6 17 280-296 174-190 (355)
148 PRK11546 zraP zinc resistance 49.3 1.7E+02 0.0037 28.7 10.0 61 628-702 50-110 (143)
149 PF07693 KAP_NTPase: KAP famil 49.2 12 0.00026 40.1 2.6 32 265-296 6-37 (325)
150 PF13671 AAA_33: AAA domain; P 48.8 7.4 0.00016 36.2 0.7 16 281-296 1-16 (143)
151 PF06414 Zeta_toxin: Zeta toxi 48.1 8.3 0.00018 38.8 1.0 20 277-296 13-32 (199)
152 PRK11192 ATP-dependent RNA hel 48.0 10 0.00022 42.7 1.9 24 271-296 32-55 (434)
153 PF06048 DUF927: Domain of unk 47.5 15 0.00032 39.5 2.9 34 262-296 177-210 (286)
154 PRK11448 hsdR type I restricti 47.5 8.8 0.00019 49.0 1.3 31 267-298 422-452 (1123)
155 COG1419 FlhF Flagellar GTP-bin 47.3 15 0.00031 41.7 2.8 37 260-296 180-220 (407)
156 COG1223 Predicted ATPase (AAA+ 47.2 8.3 0.00018 41.3 0.9 19 278-296 150-168 (368)
157 PRK13764 ATPase; Provisional 46.9 9.7 0.00021 45.3 1.5 21 278-298 256-276 (602)
158 PF00063 Myosin_head: Myosin h 46.6 12 0.00026 45.2 2.2 22 275-296 81-102 (689)
159 PF03215 Rad17: Rad17 cell cyc 46.5 12 0.00025 44.0 2.0 31 267-297 31-63 (519)
160 PRK11331 5-methylcytosine-spec 46.4 14 0.00031 42.5 2.6 28 484-515 319-346 (459)
161 PRK04837 ATP-dependent RNA hel 46.4 11 0.00024 42.5 1.8 24 271-296 39-62 (423)
162 PF13238 AAA_18: AAA domain; P 46.3 7.6 0.00016 35.1 0.4 16 282-297 1-16 (129)
163 CHL00081 chlI Mg-protoporyphyr 46.2 7.5 0.00016 43.2 0.4 46 244-297 11-56 (350)
164 PF05130 FlgN: FlgN protein; 45.9 1.6E+02 0.0034 27.1 9.3 50 629-694 5-54 (143)
165 PRK10590 ATP-dependent RNA hel 45.8 13 0.00027 42.6 2.1 24 271-296 32-55 (456)
166 PLN03025 replication factor C 45.7 15 0.00032 39.9 2.6 22 277-298 32-53 (319)
167 TIGR00348 hsdR type I site-spe 45.4 15 0.00033 44.3 2.8 31 266-297 246-281 (667)
168 TIGR02881 spore_V_K stage V sp 45.4 8.8 0.00019 40.4 0.7 18 280-297 43-60 (261)
169 PRK00440 rfc replication facto 44.9 15 0.00033 39.0 2.5 21 276-296 35-55 (319)
170 PRK14722 flhF flagellar biosyn 44.5 9.8 0.00021 42.7 1.0 19 279-297 137-155 (374)
171 KOG2373 Predicted mitochondria 44.1 18 0.00038 40.3 2.8 28 269-297 261-291 (514)
172 PRK00080 ruvB Holliday junctio 43.9 14 0.00031 40.1 2.2 40 257-297 28-69 (328)
173 TIGR01817 nifA Nif-specific re 43.9 15 0.00032 42.9 2.4 45 246-296 192-236 (534)
174 PRK10416 signal recognition pa 43.1 20 0.00043 39.3 3.1 18 280-297 115-132 (318)
175 KOG3850 Predicted membrane pro 43.1 1.3E+02 0.0028 33.9 9.0 32 627-659 259-290 (455)
176 PF02456 Adeno_IVa2: Adenoviru 42.8 9.7 0.00021 41.7 0.6 17 281-297 89-105 (369)
177 PRK10536 hypothetical protein; 42.4 15 0.00033 39.3 1.9 40 247-296 52-91 (262)
178 PRK14961 DNA polymerase III su 42.1 14 0.00031 41.0 1.8 41 248-296 14-55 (363)
179 PF05729 NACHT: NACHT domain 41.8 12 0.00026 35.2 1.1 17 281-297 2-18 (166)
180 TIGR01618 phage_P_loop phage n 41.8 12 0.00025 39.0 1.0 22 278-299 11-32 (220)
181 PF04102 SlyX: SlyX; InterPro 41.7 57 0.0012 27.7 5.0 36 673-708 17-52 (69)
182 PF10236 DAP3: Mitochondrial r 41.5 17 0.00037 39.6 2.2 26 272-297 16-41 (309)
183 PRK13341 recombination factor 41.4 17 0.00036 44.4 2.3 22 276-297 49-70 (725)
184 PRK04195 replication factor C 41.2 16 0.00035 42.2 2.1 30 267-296 26-56 (482)
185 TIGR02237 recomb_radB DNA repa 41.1 15 0.00033 36.8 1.7 25 272-296 2-29 (209)
186 PRK14974 cell division protein 40.7 30 0.00064 38.4 4.0 19 279-297 140-158 (336)
187 PF11594 Med28: Mediator compl 40.6 2.1E+02 0.0046 26.6 8.7 61 648-709 17-77 (106)
188 COG1201 Lhr Lhr-like helicases 40.4 19 0.00041 44.3 2.5 24 271-296 31-54 (814)
189 PF12775 AAA_7: P-loop contain 40.1 15 0.00033 39.2 1.6 42 249-296 9-50 (272)
190 TIGR00614 recQ_fam ATP-depende 40.1 18 0.00039 41.5 2.3 25 270-296 19-43 (470)
191 PF03193 DUF258: Protein of un 40.1 10 0.00022 37.6 0.2 24 272-297 30-53 (161)
192 KOG0739 AAA+-type ATPase [Post 40.0 26 0.00055 38.4 3.2 37 260-296 143-183 (439)
193 PRK00771 signal recognition pa 40.0 30 0.00064 39.8 3.9 19 279-297 95-113 (437)
194 PRK00295 hypothetical protein; 39.8 82 0.0018 26.8 5.6 36 673-708 18-53 (68)
195 PRK11634 ATP-dependent RNA hel 39.2 16 0.00035 43.8 1.7 25 270-296 36-60 (629)
196 TIGR02640 gas_vesic_GvpN gas v 39.1 25 0.00055 37.1 3.0 29 266-296 10-38 (262)
197 PRK02793 phi X174 lysis protei 39.1 83 0.0018 27.0 5.6 35 673-707 21-55 (72)
198 cd01120 RecA-like_NTPases RecA 39.1 12 0.00026 34.8 0.6 16 282-297 2-17 (165)
199 PRK02119 hypothetical protein; 39.0 83 0.0018 27.1 5.6 35 673-707 22-56 (73)
200 TIGR00618 sbcc exonuclease Sbc 38.9 25 0.00054 44.7 3.4 17 280-296 27-43 (1042)
201 PRK00736 hypothetical protein; 38.7 87 0.0019 26.6 5.6 36 673-708 18-53 (68)
202 PF11932 DUF3450: Protein of u 38.5 3.1E+02 0.0067 28.8 11.1 34 672-705 68-101 (251)
203 PF13173 AAA_14: AAA domain 38.4 14 0.0003 34.4 0.8 18 280-297 3-20 (128)
204 PRK04325 hypothetical protein; 37.4 1.9E+02 0.0042 24.9 7.6 36 673-708 22-57 (74)
205 TIGR02788 VirB11 P-type DNA tr 37.3 23 0.0005 38.4 2.4 30 267-297 133-162 (308)
206 PF13555 AAA_29: P-loop contai 37.0 15 0.00032 30.8 0.7 15 282-296 26-40 (62)
207 TIGR02902 spore_lonB ATP-depen 37.0 20 0.00044 42.0 2.0 42 247-296 62-103 (531)
208 smart00763 AAA_PrkA PrkA AAA d 36.9 34 0.00074 38.3 3.7 41 251-296 52-95 (361)
209 KOG3859 Septins (P-loop GTPase 36.9 19 0.0004 39.0 1.6 24 273-296 36-59 (406)
210 COG2256 MGS1 ATPase related to 36.7 18 0.0004 40.9 1.5 39 257-296 27-65 (436)
211 PRK04537 ATP-dependent RNA hel 36.4 20 0.00043 42.4 1.9 24 271-296 40-63 (572)
212 PRK04406 hypothetical protein; 36.3 96 0.0021 26.9 5.6 35 673-707 24-58 (75)
213 TIGR00376 DNA helicase, putati 36.1 21 0.00045 42.9 2.0 17 281-297 175-191 (637)
214 PHA02244 ATPase-like protein 36.0 30 0.00065 39.0 3.1 25 270-296 112-136 (383)
215 TIGR03689 pup_AAA proteasome A 35.9 16 0.00034 42.8 0.9 50 247-296 179-233 (512)
216 PRK01297 ATP-dependent RNA hel 35.2 20 0.00044 41.0 1.7 25 270-296 117-141 (475)
217 KOG0804 Cytoplasmic Zn-finger 35.1 3.4E+02 0.0073 31.4 10.9 36 670-705 410-452 (493)
218 PHA02653 RNA helicase NPH-II; 35.0 27 0.00058 42.3 2.7 25 269-295 171-195 (675)
219 COG1219 ClpX ATP-dependent pro 34.9 17 0.00038 40.0 1.0 19 278-296 96-114 (408)
220 PF06745 KaiC: KaiC; InterPro 34.9 24 0.00051 36.0 1.9 28 269-296 6-36 (226)
221 PRK09270 nucleoside triphospha 34.8 36 0.00078 35.0 3.3 37 260-296 13-50 (229)
222 KOG0926 DEAH-box RNA helicase 34.8 22 0.00047 43.4 1.8 19 278-296 270-288 (1172)
223 PRK11889 flhF flagellar biosyn 34.8 32 0.0007 39.2 3.1 18 280-297 242-259 (436)
224 PRK06067 flagellar accessory p 34.7 26 0.00056 36.0 2.2 30 267-296 10-42 (234)
225 PRK05703 flhF flagellar biosyn 34.3 17 0.00037 41.5 0.8 18 280-297 222-239 (424)
226 PRK00846 hypothetical protein; 34.0 1.1E+02 0.0024 26.8 5.6 36 673-708 26-61 (77)
227 PRK13182 racA polar chromosome 34.0 2.7E+02 0.0059 28.1 9.2 59 640-710 89-147 (175)
228 cd01383 MYSc_type_VIII Myosin 33.9 38 0.00082 41.1 3.7 21 276-296 89-109 (677)
229 PF00735 Septin: Septin; Inte 33.8 11 0.00025 40.4 -0.6 21 276-296 1-21 (281)
230 PF13476 AAA_23: AAA domain; P 33.6 18 0.00038 35.3 0.7 19 279-297 19-37 (202)
231 cd02021 GntK Gluconate kinase 33.4 17 0.00037 34.3 0.6 15 282-296 2-16 (150)
232 PF08317 Spc7: Spc7 kinetochor 33.4 3.2E+02 0.0069 30.0 10.5 63 643-705 177-240 (325)
233 cd01385 MYSc_type_IX Myosin mo 33.3 37 0.0008 41.3 3.5 22 276-297 91-112 (692)
234 cd01394 radB RadB. The archaea 33.1 30 0.00065 35.0 2.4 28 269-296 6-36 (218)
235 PLN00206 DEAD-box ATP-dependen 33.0 31 0.00067 40.3 2.7 23 271-295 152-174 (518)
236 PF05667 DUF812: Protein of un 33.0 2.5E+02 0.0055 33.7 10.2 36 672-707 392-427 (594)
237 cd01123 Rad51_DMC1_radA Rad51_ 32.9 24 0.00053 35.9 1.7 29 268-296 5-36 (235)
238 cd01381 MYSc_type_VII Myosin m 32.8 40 0.00086 40.9 3.6 22 276-297 83-104 (671)
239 cd01850 CDC_Septin CDC/Septin. 32.8 20 0.00044 38.3 1.1 21 276-296 1-21 (276)
240 TIGR03819 heli_sec_ATPase heli 32.6 26 0.00057 38.7 2.0 29 268-297 168-196 (340)
241 cd01127 TrwB Bacterial conjuga 32.6 18 0.00038 40.9 0.6 20 279-298 42-61 (410)
242 PRK00131 aroK shikimate kinase 32.6 20 0.00044 34.3 1.0 17 280-296 5-21 (175)
243 PRK14723 flhF flagellar biosyn 32.6 40 0.00088 41.3 3.6 25 639-663 672-696 (767)
244 TIGR01360 aden_kin_iso1 adenyl 32.5 26 0.00056 34.1 1.7 29 281-309 5-39 (188)
245 PRK06995 flhF flagellar biosyn 32.3 19 0.00041 41.9 0.8 18 280-297 257-274 (484)
246 cd01387 MYSc_type_XV Myosin mo 32.1 39 0.00085 40.9 3.5 22 276-297 84-105 (677)
247 PRK05580 primosome assembly pr 32.0 24 0.00052 42.7 1.6 36 254-296 144-179 (679)
248 PRK13729 conjugal transfer pil 32.0 1.4E+02 0.003 34.6 7.6 43 646-698 79-121 (475)
249 KOG3091 Nuclear pore complex, 31.8 2.8E+02 0.006 32.4 9.8 31 627-657 336-366 (508)
250 COG1125 OpuBA ABC-type proline 31.8 19 0.00042 38.6 0.7 58 458-525 145-214 (309)
251 PRK04328 hypothetical protein; 31.8 32 0.00069 36.1 2.3 28 268-295 9-39 (249)
252 cd00632 Prefoldin_beta Prefold 31.6 2.5E+02 0.0054 25.5 7.9 35 672-706 68-102 (105)
253 TIGR03158 cas3_cyano CRISPR-as 31.5 29 0.00064 38.4 2.1 26 271-296 6-31 (357)
254 COG3829 RocR Transcriptional r 31.5 30 0.00065 40.6 2.2 44 244-293 239-282 (560)
255 PHA01747 putative ATP-dependen 31.5 23 0.0005 39.8 1.2 95 262-381 173-273 (425)
256 PRK09361 radB DNA repair and r 31.3 35 0.00075 34.8 2.5 30 267-296 8-40 (225)
257 PF10146 zf-C4H2: Zinc finger- 31.2 2.6E+02 0.0057 29.4 8.9 58 646-703 35-103 (230)
258 cd01393 recA_like RecA is a b 31.2 32 0.0007 34.8 2.2 31 267-297 4-37 (226)
259 KOG4657 Uncharacterized conser 31.1 4.2E+02 0.009 28.0 10.0 63 639-705 41-110 (246)
260 TIGR01241 FtsH_fam ATP-depende 31.0 19 0.00041 41.7 0.6 51 246-297 51-106 (495)
261 TIGR00064 ftsY signal recognit 30.8 34 0.00074 36.6 2.4 18 280-297 73-90 (272)
262 PF10267 Tmemb_cc2: Predicted 30.8 2.2E+02 0.0048 32.4 8.8 34 676-709 46-83 (395)
263 PF12774 AAA_6: Hydrolytic ATP 30.7 26 0.00056 36.7 1.4 19 279-297 32-50 (231)
264 KOG0953 Mitochondrial RNA heli 30.7 23 0.00051 41.5 1.2 16 281-296 193-208 (700)
265 TIGR03752 conj_TIGR03752 integ 30.6 2E+02 0.0044 33.4 8.5 33 673-705 108-140 (472)
266 TIGR01359 UMP_CMP_kin_fam UMP- 30.6 22 0.00048 34.7 0.9 15 282-296 2-16 (183)
267 TIGR02030 BchI-ChlI magnesium 30.6 24 0.00053 39.0 1.3 43 247-297 1-43 (337)
268 cd01126 TraG_VirD4 The TraG/Tr 30.4 25 0.00055 39.1 1.4 15 282-296 2-16 (384)
269 TIGR01243 CDC48 AAA family ATP 30.4 22 0.00047 43.4 0.9 52 245-296 173-229 (733)
270 KOG1803 DNA helicase [Replicat 30.3 34 0.00074 40.5 2.4 18 280-297 202-219 (649)
271 TIGR01389 recQ ATP-dependent D 30.1 32 0.00069 40.7 2.2 25 270-296 21-45 (591)
272 PRK06696 uridine kinase; Valid 30.0 43 0.00093 34.3 2.9 20 277-296 20-39 (223)
273 PRK11057 ATP-dependent DNA hel 29.8 33 0.00071 40.9 2.3 23 271-295 34-56 (607)
274 KOG0744 AAA+-type ATPase [Post 29.8 60 0.0013 36.1 4.0 21 278-298 176-196 (423)
275 TIGR02746 TraC-F-type type-IV 29.7 21 0.00045 43.7 0.6 19 279-297 430-448 (797)
276 TIGR03877 thermo_KaiC_1 KaiC d 29.6 37 0.0008 35.2 2.4 27 269-295 8-37 (237)
277 PRK10917 ATP-dependent DNA hel 29.6 38 0.00082 41.0 2.8 39 254-296 261-299 (681)
278 KOG0726 26S proteasome regulat 29.4 43 0.00094 36.6 2.8 35 280-314 220-277 (440)
279 COG2433 Uncharacterized conser 29.3 2.7E+02 0.0059 33.3 9.3 12 418-429 254-265 (652)
280 PRK11664 ATP-dependent RNA hel 29.3 37 0.0008 42.1 2.6 28 267-296 10-37 (812)
281 TIGR02173 cyt_kin_arch cytidyl 29.2 34 0.00073 32.8 1.9 16 281-296 2-17 (171)
282 PRK15429 formate hydrogenlyase 29.0 25 0.00055 42.4 1.2 46 245-296 371-416 (686)
283 PRK07261 topology modulation p 29.0 24 0.00053 34.7 0.9 15 282-296 3-17 (171)
284 PRK12724 flagellar biosynthesi 28.9 46 0.001 38.1 3.1 18 280-297 224-241 (432)
285 TIGR01650 PD_CobS cobaltochela 28.9 23 0.00051 39.0 0.8 26 269-296 56-81 (327)
286 cd00464 SK Shikimate kinase (S 28.7 24 0.00051 33.2 0.7 16 281-296 1-16 (154)
287 PF00931 NB-ARC: NB-ARC domain 28.7 46 0.001 34.8 3.0 30 267-296 5-36 (287)
288 TIGR02880 cbbX_cfxQ probable R 28.7 23 0.00049 38.1 0.6 16 281-296 60-75 (284)
289 CHL00181 cbbX CbbX; Provisiona 28.6 23 0.0005 38.2 0.6 16 282-297 62-77 (287)
290 PRK14127 cell division protein 28.4 1.7E+02 0.0036 27.4 6.1 40 667-706 20-62 (109)
291 TIGR02322 phosphon_PhnN phosph 28.3 24 0.00053 34.4 0.7 17 281-297 3-19 (179)
292 PF05791 Bacillus_HBL: Bacillu 28.2 1.4E+02 0.0029 30.2 6.1 76 628-706 106-181 (184)
293 KOG3850 Predicted membrane pro 28.2 4.3E+02 0.0093 30.0 10.1 33 676-708 82-118 (455)
294 KOG0735 AAA+-type ATPase [Post 27.9 38 0.00083 41.0 2.3 19 278-296 700-718 (952)
295 TIGR03744 traC_PFL_4706 conjug 27.8 24 0.00052 44.1 0.7 21 278-298 474-494 (893)
296 PF14712 Snapin_Pallidin: Snap 27.7 3.7E+02 0.0081 23.5 8.2 66 627-704 20-87 (92)
297 smart00502 BBC B-Box C-termina 27.6 4.2E+02 0.009 23.7 8.8 19 669-687 41-59 (127)
298 cd01428 ADK Adenylate kinase ( 27.6 27 0.00058 34.3 0.9 15 282-296 2-16 (194)
299 PRK14964 DNA polymerase III su 27.5 31 0.00068 40.2 1.5 41 248-296 11-52 (491)
300 PRK14531 adenylate kinase; Pro 27.5 24 0.00053 34.9 0.6 16 281-296 4-19 (183)
301 COG0630 VirB11 Type IV secreto 27.0 24 0.00051 38.6 0.4 19 279-297 143-161 (312)
302 COG5019 CDC3 Septin family pro 26.9 35 0.00075 38.2 1.6 21 276-296 20-40 (373)
303 COG4096 HsdR Type I site-speci 26.9 40 0.00087 41.4 2.2 38 260-298 166-204 (875)
304 KOG0730 AAA+-type ATPase [Post 26.8 42 0.00092 40.2 2.4 17 280-296 469-485 (693)
305 PRK01172 ski2-like helicase; P 26.8 38 0.00082 40.8 2.1 22 273-296 33-54 (674)
306 PRK08118 topology modulation p 26.8 28 0.00061 34.2 0.9 15 282-296 4-18 (167)
307 TIGR01313 therm_gnt_kin carboh 26.8 22 0.00048 34.1 0.1 14 283-296 2-15 (163)
308 PRK05298 excinuclease ABC subu 26.8 56 0.0012 39.4 3.5 86 245-335 3-101 (652)
309 PRK12726 flagellar biosynthesi 26.7 28 0.0006 39.5 0.9 20 279-298 206-225 (407)
310 COG2607 Predicted ATPase (AAA+ 26.7 77 0.0017 33.9 4.0 106 272-401 77-190 (287)
311 TIGR02655 circ_KaiC circadian 26.6 70 0.0015 37.1 4.2 31 266-296 247-280 (484)
312 TIGR03881 KaiC_arch_4 KaiC dom 26.6 44 0.00095 34.1 2.3 28 269-296 7-37 (229)
313 cd01983 Fer4_NifH The Fer4_Nif 26.5 29 0.00062 29.1 0.8 16 282-297 2-17 (99)
314 PRK14721 flhF flagellar biosyn 26.5 30 0.00066 39.5 1.2 19 279-297 191-209 (420)
315 TIGR00602 rad24 checkpoint pro 26.5 37 0.0008 40.9 1.9 17 281-297 112-128 (637)
316 PF08477 Miro: Miro-like prote 26.4 24 0.00052 31.5 0.3 15 282-296 2-16 (119)
317 PF12761 End3: Actin cytoskele 26.3 4.4E+02 0.0095 27.2 9.2 50 645-694 134-194 (195)
318 cd00820 PEPCK_HprK Phosphoenol 26.3 31 0.00066 32.0 0.9 17 280-296 16-32 (107)
319 PRK14952 DNA polymerase III su 26.2 35 0.00076 40.6 1.6 41 248-296 11-52 (584)
320 PRK14970 DNA polymerase III su 26.0 49 0.0011 36.5 2.6 42 248-297 15-57 (367)
321 PF10267 Tmemb_cc2: Predicted 25.9 4.4E+02 0.0095 30.1 10.1 75 627-702 211-290 (395)
322 KOG0354 DEAD-box like helicase 25.9 46 0.001 40.5 2.5 26 268-296 68-93 (746)
323 PHA02624 large T antigen; Prov 25.9 51 0.0011 39.5 2.8 26 271-296 421-448 (647)
324 KOG0729 26S proteasome regulat 25.8 35 0.00075 36.8 1.3 20 277-296 207-228 (435)
325 cd01379 MYSc_type_III Myosin m 25.8 56 0.0012 39.5 3.3 22 276-297 83-104 (653)
326 PTZ00110 helicase; Provisional 25.7 39 0.00084 39.8 1.9 24 271-296 161-184 (545)
327 smart00787 Spc7 Spc7 kinetocho 25.7 4.8E+02 0.01 28.7 10.1 28 636-663 165-192 (312)
328 cd01386 MYSc_type_XVIII Myosin 25.7 55 0.0012 40.3 3.2 21 276-296 83-103 (767)
329 cd02020 CMPK Cytidine monophos 25.6 31 0.00068 32.0 0.9 15 282-296 2-16 (147)
330 PF04548 AIG1: AIG1 family; I 25.5 29 0.00062 35.4 0.7 16 281-296 2-17 (212)
331 TIGR02397 dnaX_nterm DNA polym 25.5 51 0.0011 35.8 2.6 35 258-296 18-53 (355)
332 PF12999 PRKCSH-like: Glucosid 25.4 3.8E+02 0.0083 27.1 8.5 28 674-701 146-173 (176)
333 COG0467 RAD55 RecA-superfamily 25.3 46 0.00099 34.9 2.2 25 271-295 12-39 (260)
334 PRK14962 DNA polymerase III su 25.2 49 0.0011 38.3 2.6 41 248-296 12-53 (472)
335 PRK06305 DNA polymerase III su 25.2 39 0.00086 38.8 1.8 41 248-296 15-56 (451)
336 PF13094 CENP-Q: CENP-Q, a CEN 25.2 5.3E+02 0.012 25.1 9.5 34 674-707 48-81 (160)
337 KOG0330 ATP-dependent RNA heli 25.0 63 0.0014 36.6 3.2 25 270-296 91-115 (476)
338 TIGR00231 small_GTP small GTP- 25.0 28 0.00061 31.5 0.5 16 281-296 3-18 (161)
339 PF09730 BicD: Microtubule-ass 25.0 1.7E+02 0.0037 35.8 7.0 55 645-699 558-615 (717)
340 TIGR00643 recG ATP-dependent D 24.9 51 0.0011 39.5 2.7 39 254-296 235-273 (630)
341 COG0419 SbcC ATPase involved i 24.8 84 0.0018 39.4 4.7 19 278-296 24-42 (908)
342 TIGR02236 recomb_radA DNA repa 24.8 49 0.0011 35.6 2.4 30 267-296 80-112 (310)
343 PRK10867 signal recognition pa 24.7 72 0.0016 36.6 3.7 19 279-297 100-118 (433)
344 CHL00195 ycf46 Ycf46; Provisio 24.5 31 0.00068 40.1 0.8 18 279-296 259-276 (489)
345 PRK14955 DNA polymerase III su 24.4 40 0.00086 37.9 1.6 41 248-296 14-55 (397)
346 PRK13767 ATP-dependent helicas 24.4 43 0.00093 41.8 2.0 22 273-296 43-64 (876)
347 cd01124 KaiC KaiC is a circadi 24.3 33 0.00071 33.4 0.8 15 282-296 2-16 (187)
348 TIGR01351 adk adenylate kinase 24.2 42 0.00091 34.0 1.6 15 282-296 2-16 (210)
349 cd02023 UMPK Uridine monophosp 24.2 30 0.00064 34.5 0.5 15 282-296 2-16 (198)
350 PRK09111 DNA polymerase III su 24.1 38 0.00082 40.5 1.4 27 270-296 36-63 (598)
351 PF02367 UPF0079: Uncharacteri 24.1 34 0.00073 32.4 0.8 20 280-299 16-35 (123)
352 TIGR02639 ClpA ATP-dependent C 24.1 34 0.00074 41.7 1.1 44 248-299 180-223 (731)
353 TIGR02688 conserved hypothetic 24.0 26 0.00056 40.1 0.0 25 276-302 208-232 (449)
354 PRK08233 hypothetical protein; 24.0 33 0.00072 33.2 0.8 16 281-296 5-20 (182)
355 PF10923 DUF2791: P-loop Domai 23.9 61 0.0013 37.1 2.9 27 270-296 40-66 (416)
356 CHL00176 ftsH cell division pr 23.8 47 0.001 40.0 2.1 18 280-297 217-234 (638)
357 cd02025 PanK Pantothenate kina 23.8 23 0.00051 36.5 -0.3 12 285-296 5-16 (220)
358 PRK10865 protein disaggregatio 23.7 59 0.0013 40.6 3.0 17 280-296 599-615 (857)
359 cd01853 Toc34_like Toc34-like 23.6 52 0.0011 34.8 2.2 20 277-296 29-48 (249)
360 PF04466 Terminase_3: Phage te 23.5 27 0.00058 39.3 0.0 17 282-298 5-21 (387)
361 PF10412 TrwB_AAD_bind: Type I 23.5 27 0.00059 39.2 0.1 18 280-297 16-33 (386)
362 PRK11034 clpA ATP-dependent Cl 23.5 66 0.0014 39.6 3.3 19 279-297 488-506 (758)
363 PF00485 PRK: Phosphoribulokin 23.4 31 0.00066 34.5 0.4 15 282-296 2-16 (194)
364 PRK06217 hypothetical protein; 23.3 35 0.00075 33.8 0.8 15 282-296 4-18 (183)
365 PF11559 ADIP: Afadin- and alp 23.2 3.9E+02 0.0085 25.7 8.0 56 637-698 95-150 (151)
366 PRK00300 gmk guanylate kinase; 23.0 36 0.00079 33.9 0.8 18 279-296 5-22 (205)
367 PRK09039 hypothetical protein; 22.9 4.8E+02 0.01 29.0 9.7 64 635-704 143-207 (343)
368 KOG1029 Endocytic adaptor prot 22.8 4.2E+02 0.009 32.8 9.3 67 640-706 434-504 (1118)
369 TIGR03263 guanyl_kin guanylate 22.8 36 0.00079 33.1 0.8 16 281-296 3-18 (180)
370 COG1783 XtmB Phage terminase l 22.8 1.1E+02 0.0023 34.7 4.4 16 281-296 26-41 (414)
371 COG1102 Cmk Cytidylate kinase 22.8 41 0.00089 33.8 1.1 31 283-313 4-40 (179)
372 TIGR00929 VirB4_CagE type IV s 22.7 34 0.00074 41.7 0.7 19 279-297 434-452 (785)
373 TIGR02768 TraA_Ti Ti-type conj 22.7 48 0.001 40.7 1.9 27 271-298 361-387 (744)
374 PF03969 AFG1_ATPase: AFG1-lik 22.7 37 0.00081 38.0 0.9 18 279-296 62-79 (362)
375 KOG0652 26S proteasome regulat 22.6 55 0.0012 35.3 2.1 17 280-296 206-222 (424)
376 PRK13889 conjugal transfer rel 22.5 47 0.001 42.0 1.8 54 648-704 880-941 (988)
377 TIGR03117 cas_csf4 CRISPR-asso 22.4 58 0.0013 39.2 2.5 32 259-296 2-33 (636)
378 PF02534 T4SS-DNA_transf: Type 22.3 55 0.0012 37.3 2.2 17 280-296 45-61 (469)
379 smart00489 DEXDc3 DEAD-like he 22.3 63 0.0014 34.8 2.6 35 256-296 10-44 (289)
380 smart00488 DEXDc2 DEAD-like he 22.3 63 0.0014 34.8 2.6 35 256-296 10-44 (289)
381 PRK04040 adenylate kinase; Pro 22.1 39 0.00084 34.0 0.8 16 281-296 4-19 (188)
382 PF03961 DUF342: Protein of un 22.1 6E+02 0.013 29.1 10.6 62 646-707 344-408 (451)
383 PRK13873 conjugal transfer ATP 22.1 32 0.00069 42.5 0.3 18 280-297 442-459 (811)
384 TIGR01425 SRP54_euk signal rec 22.1 72 0.0016 36.6 3.0 19 279-297 100-118 (429)
385 PRK05342 clpX ATP-dependent pr 22.1 39 0.00084 38.5 0.9 18 279-296 108-125 (412)
386 TIGR01613 primase_Cterm phage/ 22.0 37 0.00079 36.7 0.7 27 270-296 64-93 (304)
387 PF14532 Sigma54_activ_2: Sigm 21.9 39 0.00086 31.7 0.8 21 276-296 18-38 (138)
388 cd03274 ABC_SMC4_euk Eukaryoti 21.9 40 0.00087 34.5 0.9 17 281-297 27-43 (212)
389 TIGR00580 mfd transcription-re 21.8 55 0.0012 41.2 2.2 30 267-296 460-489 (926)
390 TIGR00382 clpX endopeptidase C 21.8 39 0.00085 38.5 0.9 18 279-296 116-133 (413)
391 PRK14532 adenylate kinase; Pro 21.7 44 0.00096 32.9 1.2 16 281-296 2-17 (188)
392 COG1162 Predicted GTPases [Gen 21.6 1.1E+02 0.0023 33.6 4.1 86 271-377 158-246 (301)
393 KOG0336 ATP-dependent RNA heli 21.5 67 0.0014 36.6 2.5 54 240-298 212-278 (629)
394 PRK14729 miaA tRNA delta(2)-is 21.5 45 0.00097 36.4 1.2 16 281-296 6-21 (300)
395 TIGR02639 ClpA ATP-dependent C 21.5 72 0.0016 39.0 3.1 18 280-297 485-502 (731)
396 PRK04301 radA DNA repair and r 21.4 66 0.0014 34.9 2.5 29 268-296 88-119 (317)
397 PRK13853 type IV secretion sys 21.4 35 0.00077 42.0 0.5 19 279-297 426-444 (789)
398 PRK02496 adk adenylate kinase; 21.4 51 0.0011 32.4 1.5 28 282-309 4-37 (184)
399 KOG0250 DNA repair protein RAD 21.4 5.1E+02 0.011 33.1 10.1 73 636-708 696-775 (1074)
400 COG1136 SalX ABC-type antimicr 21.3 37 0.00079 35.6 0.5 16 281-296 33-48 (226)
401 PRK10820 DNA-binding transcrip 21.2 49 0.0011 38.7 1.6 47 244-296 198-244 (520)
402 TIGR03817 DECH_helic helicase/ 21.2 54 0.0012 40.2 2.0 24 271-296 45-68 (742)
403 cd03279 ABC_sbcCD SbcCD and ot 21.1 43 0.00094 34.0 0.9 20 279-298 28-47 (213)
404 PRK10078 ribose 1,5-bisphospho 21.1 40 0.00087 33.4 0.7 16 281-296 4-19 (186)
405 PF01926 MMR_HSR1: 50S ribosom 21.0 34 0.00075 30.7 0.2 15 282-296 2-16 (116)
406 PRK05896 DNA polymerase III su 21.0 46 0.001 39.7 1.3 41 248-296 14-55 (605)
407 TIGR00763 lon ATP-dependent pr 20.9 47 0.001 40.9 1.4 16 281-296 349-364 (775)
408 PRK05986 cob(I)alamin adenolsy 20.9 33 0.00071 35.1 0.0 27 279-305 22-48 (191)
409 PF01745 IPT: Isopentenyl tran 20.8 40 0.00088 35.3 0.7 16 281-296 3-18 (233)
410 COG3839 MalK ABC-type sugar tr 20.8 39 0.00084 37.5 0.6 15 282-296 32-46 (338)
411 TIGR01074 rep ATP-dependent DN 20.8 44 0.00096 40.0 1.1 18 279-296 14-31 (664)
412 cd03240 ABC_Rad50 The catalyti 20.6 43 0.00092 34.0 0.8 17 281-297 24-40 (204)
413 PRK06851 hypothetical protein; 20.5 1.2E+02 0.0026 34.1 4.3 28 270-297 21-48 (367)
414 PRK13531 regulatory ATPase Rav 20.5 61 0.0013 37.9 2.0 29 266-296 28-56 (498)
415 TIGR01447 recD exodeoxyribonuc 20.4 53 0.0011 39.2 1.6 25 271-297 154-178 (586)
416 TIGR02231 conserved hypothetic 20.3 4.9E+02 0.011 30.4 9.6 64 642-705 84-169 (525)
417 PF00158 Sigma54_activat: Sigm 20.3 48 0.001 32.8 1.0 94 276-381 19-124 (168)
418 PF03668 ATP_bind_2: P-loop AT 20.3 1.2E+02 0.0026 33.0 4.0 32 281-312 3-45 (284)
419 PTZ00014 myosin-A; Provisional 20.2 89 0.0019 38.8 3.5 21 276-296 180-200 (821)
420 PRK14960 DNA polymerase III su 20.2 53 0.0012 39.8 1.6 41 248-296 13-54 (702)
421 PF10473 CENP-F_leu_zip: Leuci 20.2 7.4E+02 0.016 24.2 9.1 29 634-662 57-85 (140)
422 PRK06762 hypothetical protein; 20.2 48 0.001 31.9 1.0 16 281-296 4-19 (166)
423 PRK10689 transcription-repair 20.1 70 0.0015 41.2 2.6 40 253-296 599-638 (1147)
424 PRK04296 thymidine kinase; Pro 20.0 30 0.00065 34.7 -0.5 18 281-298 4-21 (190)
No 1
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-102 Score=848.02 Aligned_cols=601 Identities=39% Similarity=0.554 Sum_probs=469.9
Q ss_pred CchhhhcccchhcccccCCCCCCC--------CccccccCCCCCCcch---hhhhhhhcccCCCCccccCCC--CCCCCC
Q 005092 35 GRWLQSAGLQHLQQSSATGTIPPL--------QQDYNFYGGGGGGQGS---RMYRNAQRGFGGGNEFYMEPS--TPPVSS 101 (715)
Q Consensus 35 ~~w~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (715)
.+|++.++.+|...++.+...... .+|++.++ |+ ++.+ +.+. ++|+++-.-++ ..-+ +|++.+
T Consensus 34 veW~E~~~~kgKe~~le~i~~lnp~l~~~~~~~~~~lp~~-~~-~~~a~~~~~~~-~n~~i~~~~~~-~~~rs~~~tg~~ 109 (676)
T KOG0246|consen 34 VEWVEKGETKGKELDLEEILLLNPELYSDLEHPIPNLPLK-RP-ASTAINRKGIE-ANRTIYESIEM-IPQRSQRATGSS 109 (676)
T ss_pred EEhhhccccccccCCHHHHhhcChhhcccccCCCCCcccc-cc-ccchhhhhhhh-hhhhccccccc-chhhcccccccc
Confidence 489999999999999888777665 55777777 42 2222 4444 66666622222 2222 343322
Q ss_pred -------CCCccCCCC-CCCCCCCCCc-cccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 005092 102 -------RPSSQRKSG-EQSPNEFSPG-LLDLHSFD-TELLPEMPVPGLYDSSSLFNPVRGRSFDDSEPHIANNKQTGRA 171 (715)
Q Consensus 102 -------~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 171 (715)
.|+...+.. |..++.+.++ ..+.|+|+ +|.|.|..... +.+++ ..+.+..+.-+.++...+-.+....
T Consensus 110 ~~~~~~~~P~~~~~~~~p~~~~~~~a~~~rks~~v~e~e~l~e~re~~-r~~~~-~~r~~r~~~~~~d~~npn~e~~~mi 187 (676)
T KOG0246|consen 110 CKRLETALPSQRIFPPQPKSTGTAAAASARKSHAVKEVEKLQEQREKR-REPSP-RMRSRRKSAQDVDPSNPNWEFAQMI 187 (676)
T ss_pred cccccccCCcccCCCCCCcccccchhhhhhhcccccchHHHHHHHHHh-hccCc-cccccchhhcccCCCCCchHHHHHH
Confidence 455555555 8899999998 89999999 99999888776 66666 5554443333333222111111111
Q ss_pred CCCCCccccchhhhhhhhcCCCCCCCeEEEEEeCCCCchhhhcCCCceEEE-cCCeEEEecccccccccccccceeEEee
Q 005092 172 RGLPENNLLKSFAADKEKANASSVAKIKVVVRKRPLNKKELAKNEEDIIET-YSNSLTVHETKLKVDLTEYVEKHEFVFD 250 (715)
Q Consensus 172 ~~~p~~~~~~~~~~~~~~~~~~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~-~~~~v~v~~~~~k~~~~~~~~~~~F~FD 250 (715)
+.-...--..++. ...+...++|+||||+||++++|....+.++|++ ..+.++||+|+.+||++.|++++.|.||
T Consensus 188 ~~~r~~L~~~pls----~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FD 263 (676)
T KOG0246|consen 188 REYREQLDSSPLS----MGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFD 263 (676)
T ss_pred HHHhhhhcccccc----cCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEe
Confidence 1100000000000 1133467899999999999999999999999999 5589999999999999999999999999
Q ss_pred eecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc------------CCChhhHHHHHHHHhh-hccC
Q 005092 251 AVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------------PLPLKASRDILRLMHH-TYRS 317 (715)
Q Consensus 251 ~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~------------Gl~~~a~~~If~~i~~-~~~~ 317 (715)
++||+.++++.||+.+++|||+.+|+|..+||||||||||||||||. |++..+.+|+|..+.. .|..
T Consensus 264 yaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~ 343 (676)
T KOG0246|consen 264 YAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRK 343 (676)
T ss_pred eecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhh
Confidence 99999999999999999999999999999999999999999999994 5889999999999988 8888
Q ss_pred cceEEEEEEEEEeCceeecccCCccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCee
Q 005092 318 QGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHA 397 (715)
Q Consensus 318 ~~~~V~vS~~EIYnE~v~DLL~~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~ 397 (715)
.++.|++||||||+++|||||+++++|+++||++++|+|+||+|..|.+++|++++|+.|++.|+++.|.+|..|||||+
T Consensus 344 ~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHA 423 (676)
T KOG0246|consen 344 LDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHA 423 (676)
T ss_pred cceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCCCCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcc
Q 005092 398 ILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKL 477 (715)
Q Consensus 398 If~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKL 477 (715)
||+|.++.. .....+|||+||||||+||++++..+++++++||++|||||+||++||+||.+++.|+|||.|||
T Consensus 424 vfQIilr~~------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKL 497 (676)
T KOG0246|consen 424 VFQIILRKH------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKL 497 (676)
T ss_pred eEeeeeecC------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhH
Confidence 999999864 22578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCC-cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc-ccccccccccccccCCCCCCCCCCCCC
Q 005092 478 TEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK-DILSSTINLKESTTAPLSSALPTTSPY 555 (715)
Q Consensus 478 TrLLrdsLgG-nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (715)
|++|||||.| |+|||||+||||+..+|++||||||||+|+|++.....+.. .+. +.....+..
T Consensus 498 TqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~~~~~~~------------~~~~~~p~~--- 562 (676)
T KOG0246|consen 498 TQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGGPSGRMPR------------AIGEETPNS--- 562 (676)
T ss_pred HHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCCccccCcc------------cccCCCccc---
Confidence 9999999999 99999999999999999999999999999999976554311 000 000000000
Q ss_pred CCCCCCCCcCCcCcccccCcCCcchhhhhhhcccCcccCCCCcchhhcCCCCCCCCCcccCCCCCCCCCCchhHHHHHHH
Q 005092 556 EDDTDAWPEQNERDDFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDNLSALLQ 635 (715)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ile 635 (715)
+.. +..+. .+ .+....+ +. .. +..+......++-+
T Consensus 563 -~~~----------------s~~~~-~~----------~~~~~~~-~~---~~-------------e~~~~~~~~~~~~~ 597 (676)
T KOG0246|consen 563 -DPE----------------SNSET-QP----------LNPSRDE-EP---SS-------------EPNEENSEREEASE 597 (676)
T ss_pred -cch----------------hcccc-CC----------CCccccc-cc---cc-------------Cccccccchhhhhh
Confidence 000 00000 00 0000000 00 00 00000123333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005092 636 EEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVLV 711 (715)
Q Consensus 636 eee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee~l~ 711 (715)
.++.++..++..+.....|++-+..+..+.+.+.+|++-+..+.+.+|++|++.+..||.++..+...+.+|+-+.
T Consensus 598 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 598 HREVLVKEVRNSLNRSEKWIRLDRPIQSKTESVSSDMPIVAHKAESDLEQEEDLLAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred hHHHHHhhhccccccccccccccchhhhcccccccCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677888888888888888887666666779999999999999999999999999999999999999999888664
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-81 Score=726.56 Aligned_cols=449 Identities=31% Similarity=0.493 Sum_probs=348.6
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
...+|+|+|||||++.+|.......+|.+++ ..|.|... +....-.+.|+||+||+|++.|++||..++.|+|
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-----~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i 121 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-----IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPII 121 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-----cccccccceeecceeeCcchhHHHHHHHHHHHHH
Confidence 4568999999999999999999888888876 34555433 1122245789999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC--------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP--------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDL 337 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G--------------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DL 337 (715)
+.|+.|||||||||||||+||||||.| ++||++.+||..+... +..|+|.|||+|+|||.|+||
T Consensus 122 ~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DL 199 (1041)
T KOG0243|consen 122 KEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDL 199 (1041)
T ss_pred HHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHh
Confidence 999999999999999999999999975 7899999999999763 468999999999999999999
Q ss_pred cCCc----cceeeEe-----cCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecC
Q 005092 338 LSDR----KKLCMRE-----DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSAD 408 (715)
Q Consensus 338 L~~~----~~l~i~e-----d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 408 (715)
|++. +.+.+.. |.+++|+|+||.++.|.++.|++++|.+|.+.|++++|.||..|||||+||+|.|.....
T Consensus 200 La~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~ 279 (1041)
T KOG0243|consen 200 LASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN 279 (1041)
T ss_pred cCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC
Confidence 9753 3334433 568899999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCc
Q 005092 409 GSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGN 488 (715)
Q Consensus 409 ~~~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGn 488 (715)
......-...|||+||||||||-....++.++ +.+|+..||+||++||+||+||..+..|||||+|||||||||||||.
T Consensus 280 t~~geelvK~GKLNLVDLAGSENI~RSGA~~~-RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGk 358 (1041)
T KOG0243|consen 280 TPEGEELVKIGKLNLVDLAGSENISRSGARNG-RAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGK 358 (1041)
T ss_pred CCcchhhHhhcccceeeccccccccccccccc-hhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCC
Confidence 55555567889999999999999888887777 55699999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCcCCcC
Q 005092 489 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSPYEDDTDAWPEQNER 568 (715)
Q Consensus 489 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 568 (715)
++|||||||||+..+.+|||+||.||.|||+|+++|.++.......+ +++
T Consensus 359 TKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~l-lKd----------------------------- 408 (1041)
T KOG0243|consen 359 TKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTL-LKD----------------------------- 408 (1041)
T ss_pred ceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHH-HHH-----------------------------
Confidence 99999999999999999999999999999999999988765443321 110
Q ss_pred cccccCcCCcchhhhhhhcccCcccCCCCcchhhcCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 005092 569 DDFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDNLSALLQEEEDLVNAHRKQV 648 (715)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ileeee~~~~aHr~~~ 648 (715)
| ..|-++++..- . ..+.++.+-... +.-.............|++.+.-+.+-++.|
T Consensus 409 --~-----~~EIerLK~dl---------~----AaReKnGvyise----e~y~~~e~e~~~~~~~ieele~el~~~~~~l 464 (1041)
T KOG0243|consen 409 --L-----YEEIERLKRDL---------A----AAREKNGVYISE----ERYTQEEKEKKEMAEQIEELEEELENLEKQL 464 (1041)
T ss_pred --H-----HHHHHHHHHHH---------H----HhHhhCceEech----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111000 0 000011100000 0000000112333444455554445555555
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005092 649 EDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVLV 711 (715)
Q Consensus 649 e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee~l~ 711 (715)
.+.-+..-.+. ..-..+.+-..+|...|..+...+..++..+.+.+..|+++|.+.
T Consensus 465 ~~~~e~~~~~~-------~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii 520 (1041)
T KOG0243|consen 465 KDLTELYMNQL-------EIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII 520 (1041)
T ss_pred HHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444432211 111234566778889999999999999999999999998887654
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-81 Score=699.74 Aligned_cols=336 Identities=39% Similarity=0.542 Sum_probs=301.8
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
...+|+|+||+||++..+.......++.++. ..+.+..+.... ....+.|+||+||+++++|++||..++.|+|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGI----EGKPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccc----cCCCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 3568999999999999998888877777765 344454443222 2234669999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC-------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCcc--
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP-------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRK-- 342 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G-------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~-- 342 (715)
++|++|||+||||||||||||||||.| ++|+++..||..|........|.|+|||+|||||.|+|||++..
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~ 158 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPK 158 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcC
Confidence 999999999999999999999999975 78999999999999876666899999999999999999998754
Q ss_pred ceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEE
Q 005092 343 KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422 (715)
Q Consensus 343 ~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 422 (715)
.+.++++++.||||+||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+..............|||+
T Consensus 159 ~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 159 GLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred CceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 89999999999999999999999999999999999999999999999999999999999999854444445567889999
Q ss_pred EEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCC-CCcCCCCccccccccccCCcceeEEEEecCCCC
Q 005092 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG-HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 501 (715)
Q Consensus 423 fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~-hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 501 (715)
|||||||||..++++. +.+++|+.+||+||++||+||.||.++++ ||||||||||+||||||||||+|+|||||+|+.
T Consensus 239 lvDLagsEr~~~tga~-G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~ 317 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAE-GERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSS 317 (574)
T ss_pred eeeccchhhhcccCcc-chhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchh
Confidence 9999999998776654 56788999999999999999999998876 999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhccccCCCCCccccccc
Q 005092 502 GCCEHTLNTLRYADRVKSLSKGNNPKKDILSST 534 (715)
Q Consensus 502 ~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~ 534 (715)
.+++|||+|||||+|+|.|++.+.++.++..+.
T Consensus 318 ~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~ 350 (574)
T KOG4280|consen 318 DNYEETLSTLRFAQRAKAIKNKPVINEDPKDAL 350 (574)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccccCCcchhh
Confidence 999999999999999999999999999887433
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-80 Score=702.71 Aligned_cols=334 Identities=33% Similarity=0.502 Sum_probs=301.3
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCC-------CChHHHHHHhh
Q 005092 195 VAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE-------VSNDEVYRETV 267 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~~ 267 (715)
...|+|+|||||+|.+|..++..+||.+.+++.+|..++... +...|+||+.|+.. ++|..||+.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k------~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg 76 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK------DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLG 76 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc------cCCceecceeeecCCCCCCchhhHHHHHHHHh
Confidence 456999999999999999999999999999888887665322 33459999998543 68999999999
Q ss_pred hhhHHHHhcCCCeEEEeeccCCCCCcccccC--------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCceeeccc
Q 005092 268 EPIVPIIFQRTKATCFAYGQTGSGKTYTMKP--------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLL 338 (715)
Q Consensus 268 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G--------l~~~a~~~If~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL 338 (715)
.++++++|+|||+||||||||||||||||+| |+|+.+.++|..+.. ..++..|.|.|||+|||||+|+|||
T Consensus 77 ~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL 156 (1221)
T KOG0245|consen 77 REMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL 156 (1221)
T ss_pred HHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence 9999999999999999999999999999975 779999999999987 4556789999999999999999999
Q ss_pred C-C--ccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCC-CC
Q 005092 339 S-D--RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSES-KP 414 (715)
Q Consensus 339 ~-~--~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~-~~ 414 (715)
+ + +..|++||.+.-|+||.+|+.+.|+|..|+..+|+.|++.|++++|+||+.|||||+||+|.+.+.....+. ..
T Consensus 157 ~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~ 236 (1221)
T KOG0245|consen 157 NAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLD 236 (1221)
T ss_pred hCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCc
Confidence 8 4 567999999999999999999999999999999999999999999999999999999999999887554433 34
Q ss_pred CeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC-------CCCcCCCCccccccccccCC
Q 005092 415 PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-------GHIPFRGSKLTEVLRDSFVG 487 (715)
Q Consensus 415 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-------~hIPyRdSKLTrLLrdsLgG 487 (715)
...+|||+|||||||||... .++.+++++||++|||||++||+||.||+..+ .+||||||.||||||+.|||
T Consensus 237 sek~SKIsLVDLAGSERass-tGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGG 315 (1221)
T KOG0245|consen 237 SEKVSKISLVDLAGSERASS-TGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGG 315 (1221)
T ss_pred ceeeeeeeEEeccCcccccc-cCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCC
Confidence 67899999999999999554 55667788899999999999999999996533 49999999999999999999
Q ss_pred cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcccccccc
Q 005092 488 NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTI 535 (715)
Q Consensus 488 nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~~ 535 (715)
||||+|||+|||+..+|+|||+|||||+|||+|++++.++.|+-..-+
T Consensus 316 NSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLI 363 (1221)
T KOG0245|consen 316 NSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLI 363 (1221)
T ss_pred cchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHH
Confidence 999999999999999999999999999999999999999999876555
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.1e-77 Score=650.04 Aligned_cols=323 Identities=40% Similarity=0.615 Sum_probs=292.8
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccc-----cccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDL-----TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~-----~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
+|+|+|||||++++|...+...+|.+.++.+.+..+...... ....+.+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999988999999887765555555433221 223456899999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC-ccce
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKKL 344 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~l 344 (715)
+++++|||+||||||||||||||||+| +.++++++||..+........|.|+|||+|||||+|+|||++ .+++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 999999999999999999999999975 789999999999988666788999999999999999999987 6889
Q ss_pred eeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEE
Q 005092 345 CMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 424 (715)
Q Consensus 345 ~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fV 424 (715)
.+++|++++++|.|++++.|.+++|++++|+.|.++|+++.|.+|..|||||+||+|+|.+.............|+|+||
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~V 240 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987655433456788999999
Q ss_pred ECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC---CCCcCCCCccccccccccCCcceeEEEEecCCCC
Q 005092 425 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 501 (715)
Q Consensus 425 DLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 501 (715)
|||||||..++.. .+.+.+|++.||+||++|++||.+|..++ .|||||+||||+||+|+|||||+|+||+||||+.
T Consensus 241 DLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 241 DLAGSERASATNN-RGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred ECCCCccccccCC-CCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 9999999776654 45667799999999999999999999887 8999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhcc
Q 005092 502 GCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 502 ~~~eETLsTLrfA~Rak~i 520 (715)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 6
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.2e-76 Score=638.00 Aligned_cols=315 Identities=66% Similarity=1.005 Sum_probs=297.1
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcCC-eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 274 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~-~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~v 274 (715)
.+|+|+|||||+++.|...++.+++.+.++ ++++++++.+++.....+.+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999998888888888775 8999988887777766668899999999999999999999999999999
Q ss_pred hcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCccceeeEe
Q 005092 275 FQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMRE 348 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~l~i~e 348 (715)
++|+|+||||||||||||||||+ |+.++++.+||..+.... ..|.|++||+|||+|+++|||++.+++.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCccceeEEE
Confidence 99999999999999999999998 799999999999987643 6799999999999999999999999999999
Q ss_pred cCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCC
Q 005092 349 DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 428 (715)
Q Consensus 349 d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAG 428 (715)
++.++++|.|++++.|.|++|++++|+.|.++|.++.|.+|..|||||+||+|+|.+... ....|+|+||||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAG 232 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAG 232 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCC
Confidence 999999999999999999999999999999999999999999999999999999987643 45689999999999
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCChHhHH
Q 005092 429 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTL 508 (715)
Q Consensus 429 SER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETL 508 (715)
|||..++....+++..|+..||+||++|++||.+|..++.|||||+||||+||||+|+|||+|+||+||||+..+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99988887777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 005092 509 NTLRYADRVK 518 (715)
Q Consensus 509 sTLrfA~Rak 518 (715)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.3e-76 Score=688.95 Aligned_cols=325 Identities=34% Similarity=0.518 Sum_probs=283.3
Q ss_pred hcCCCCCCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhh
Q 005092 189 KANASSVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVE 268 (715)
Q Consensus 189 ~~~~~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~ 268 (715)
..+.....+|+|||||||++..|. +...++.+.++.+++. .+.|.||+||+++++|++||+.++.
T Consensus 91 ~en~~~ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~ 155 (1320)
T PLN03188 91 PENGVSDSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGA 155 (1320)
T ss_pred ccccCCCCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHH
Confidence 334445679999999999998763 3344444455665542 3679999999999999999999999
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCcccccC----------------CChhhHHHHHHHHhhh-----ccCcceEEEEEEE
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMKP----------------LPLKASRDILRLMHHT-----YRSQGFQLFVSFF 327 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~G----------------l~~~a~~~If~~i~~~-----~~~~~~~V~vS~~ 327 (715)
|||+.+|+|||+||||||||||||||||+| +.++++.+||..+... .....|.|+|||+
T Consensus 156 PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyL 235 (1320)
T PLN03188 156 PLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFL 235 (1320)
T ss_pred HHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEE
Confidence 999999999999999999999999999975 6688999999988642 2345799999999
Q ss_pred EEeCceeecccCCc-cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEe
Q 005092 328 EIYGGKLFDLLSDR-KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRS 406 (715)
Q Consensus 328 EIYnE~v~DLL~~~-~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~ 406 (715)
|||||+|||||++. +.+.|++|++++++|.||+++.|.+++++.++|..|.++|++++|.+|..|||||+||+|.|.+.
T Consensus 236 EIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~ 315 (1320)
T PLN03188 236 EIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESR 315 (1320)
T ss_pred eeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEe
Confidence 99999999999875 57999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cCCC-CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCcCCCCccccc
Q 005092 407 ADGS-ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN-----DQGHIPFRGSKLTEV 480 (715)
Q Consensus 407 ~~~~-~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~-----~~~hIPyRdSKLTrL 480 (715)
.... ........|+|+|||||||||...++ ..+.+.+|+.+||+||++|++||.+|+. +..|||||+||||+|
T Consensus 316 ~k~~~dg~ss~r~SkLnLVDLAGSER~kkTg-a~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrL 394 (1320)
T PLN03188 316 CKSVADGLSSFKTSRINLVDLAGSERQKLTG-AAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFL 394 (1320)
T ss_pred ecccCCCCcceEEEEEEEEECCCchhccccC-cccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHH
Confidence 3221 22234568999999999999987765 4456677999999999999999999974 357999999999999
Q ss_pred cccccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcc
Q 005092 481 LRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKD 529 (715)
Q Consensus 481 LrdsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~ 529 (715)
|||+|||||+|+||+||||+..+++||++||+||+|||+|++.+.++..
T Consensus 395 LQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 395 LQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred HHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 9999999999999999999999999999999999999999998877654
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8.1e-76 Score=635.08 Aligned_cols=313 Identities=37% Similarity=0.528 Sum_probs=275.9
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 274 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~v 274 (715)
++|+|+|||||++..|...+...++...+ +.+.++.. ..+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~ 70 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH----------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDC 70 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC----------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHH
Confidence 46999999999999998666666665543 44444321 14689999999999999999999999999999
Q ss_pred hcCCCeEEEeeccCCCCCcccccC--------------CChhhHHHHHHHHhhh----ccCcceEEEEEEEEEeCceeec
Q 005092 275 FQRTKATCFAYGQTGSGKTYTMKP--------------LPLKASRDILRLMHHT----YRSQGFQLFVSFFEIYGGKLFD 336 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM~G--------------l~~~a~~~If~~i~~~----~~~~~~~V~vS~~EIYnE~v~D 336 (715)
++|||+||||||||||||||||+| +.++++.+||..+... .....|.|+|||+|||||+|||
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~D 150 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITD 150 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeee
Confidence 999999999999999999999976 4578889999887653 1345689999999999999999
Q ss_pred ccCCc-cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCC
Q 005092 337 LLSDR-KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPP 415 (715)
Q Consensus 337 LL~~~-~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 415 (715)
||++. ..+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|.|.+....... ..
T Consensus 151 LL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~-~~ 229 (337)
T cd01373 151 LLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS-TN 229 (337)
T ss_pred CCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC-Cc
Confidence 99865 57999999999999999999999999999999999999999999999999999999999999876433222 24
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC----CCCCCcCCCCccccccccccCCccee
Q 005092 416 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN----DQGHIPFRGSKLTEVLRDSFVGNSRT 491 (715)
Q Consensus 416 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~----~~~hIPyRdSKLTrLLrdsLgGnsrT 491 (715)
...|+|+|||||||||..++.. .+.+..|+..||+||++|++||.+|.. ++.|||||+||||+||+|+|+|||+|
T Consensus 230 ~~~s~l~~VDLAGSEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t 308 (337)
T cd01373 230 IRTSRLNLVDLAGSERQKDDGA-EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKT 308 (337)
T ss_pred EEEEEEEEEECCCCCcccccCC-ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceE
Confidence 5679999999999999877654 456778999999999999999999974 46899999999999999999999999
Q ss_pred EEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005092 492 VMISCISPSSGCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 492 ~mIa~ISP~~~~~eETLsTLrfA~Rak~i 520 (715)
+||+||||+..+++||++||+||+|||.|
T Consensus 309 ~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 309 TIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999986
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.8e-75 Score=634.25 Aligned_cols=316 Identities=32% Similarity=0.548 Sum_probs=282.9
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEc-CCeEEEecccccccc----cccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETY-SNSLTVHETKLKVDL----TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 270 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~-~~~v~v~~~~~k~~~----~~~~~~~~F~FD~VF~~~asQeeVy~~~~~pl 270 (715)
.+|+|||||||++..|...+...++.+. ++++.++.|...... ......+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 3799999999999999887777777764 478888877653322 22345689999999999999999999999999
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc---
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR--- 341 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~--- 341 (715)
|+.+++|+|+||||||||||||||||+| +.++++.+||..+.. |.|+|||+|||||+|||||++.
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~ 154 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSS 154 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCcccc
Confidence 9999999999999999999999999976 789999999998865 9999999999999999999753
Q ss_pred ----cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCC-----C
Q 005092 342 ----KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSE-----S 412 (715)
Q Consensus 342 ----~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-----~ 412 (715)
+++.+++|++++++|.|++++.|.|++|++++|..|.++|.++.|.+|..|||||+||+|+|.+...... .
T Consensus 155 ~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 234 (345)
T cd01368 155 TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQD 234 (345)
T ss_pred ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccC
Confidence 3689999999999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred CCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC------CCCCCcCCCCccccccccccC
Q 005092 413 KPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------DQGHIPFRGSKLTEVLRDSFV 486 (715)
Q Consensus 413 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~------~~~hIPyRdSKLTrLLrdsLg 486 (715)
......|+|+|||||||||..++. +.+.+.+|+..||+||++|++||++|.. +..|||||+||||+||+|+|+
T Consensus 235 ~~~~~~s~l~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~ 313 (345)
T cd01368 235 KDQITVSQLSLVDLAGSERTSRTQ-NTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD 313 (345)
T ss_pred CCceEEEEEEEEeccccccccccc-ccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 245678999999999999988774 4566778999999999999999999986 468999999999999999999
Q ss_pred CcceeEEEEecCCCCCChHhHHHHHHHHHHhh
Q 005092 487 GNSRTVMISCISPSSGCCEHTLNTLRYADRVK 518 (715)
Q Consensus 487 GnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak 518 (715)
|||+|+||+||||+..+++||++||+||.+|+
T Consensus 314 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 314 GEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 10
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-76 Score=647.36 Aligned_cols=326 Identities=37% Similarity=0.531 Sum_probs=292.9
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
.+..|+|+||+||++..|...+...+..+.+ +++.+... + +...|.||+||.|+++|++||..++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-------~--~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-------K--ETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-------c--ccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 5678999999999999998888777666554 33333221 1 33789999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc---------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC-c
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK---------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-R 341 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~---------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~ 341 (715)
++||.|||+||||||||||||||||. |+.|+.+.+||..|........|.|.|||||||+|+++|||++ +
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k 155 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK 155 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc
Confidence 99999999999999999999999995 4778999999999998877889999999999999999999996 4
Q ss_pred cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEE
Q 005092 342 KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKL 421 (715)
Q Consensus 342 ~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 421 (715)
.++.+.+|.+..++|+|++++.|.++++++++|+.|..+|.++.|+||.+|||||+||+|+|++..... .....|||
T Consensus 156 ~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---~~~~~gkL 232 (607)
T KOG0240|consen 156 TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---KRKLSGKL 232 (607)
T ss_pred CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---hhhccccE
Confidence 679999999999999999999999999999999999999999999999999999999999999875433 45688999
Q ss_pred EEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCcceeEEEEecCCC
Q 005092 422 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPS 500 (715)
Q Consensus 422 ~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~ 500 (715)
.||||||||+..+++ +.+....|+++||+||.|||+||+||+.+ ..|||||||||||||||+|||||||.+|+|++|+
T Consensus 233 yLVDLaGSEkvsKtg-a~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPs 311 (607)
T KOG0240|consen 233 YLVDLAGSEKVSKTG-AEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPS 311 (607)
T ss_pred EEEEcccccccCCCC-ccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCc
Confidence 999999999977665 45677789999999999999999999988 7899999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhhccccCCCCCccccc
Q 005092 501 SGCCEHTLNTLRYADRVKSLSKGNNPKKDILS 532 (715)
Q Consensus 501 ~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~ 532 (715)
.-+..||.+||+|++|||.|++....+.....
T Consensus 312 s~n~~ET~STl~fg~rak~ikN~v~~n~e~~~ 343 (607)
T KOG0240|consen 312 SLNEAETKSTLRFGNRAKTIKNTVWVNLELTA 343 (607)
T ss_pred cccccccccchhhccccccccchhhhhhHhhH
Confidence 99999999999999999999876665544333
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.8e-74 Score=624.39 Aligned_cols=328 Identities=34% Similarity=0.506 Sum_probs=295.7
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCC-------CChHHHHHHhhh
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE-------VSNDEVYRETVE 268 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~~~ 268 (715)
++|+|+||+||++..|...++..++.+.++.+++..+.... ........|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999998776321 223356889999999999 999999999999
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCceeecccCCc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLFDLLSDR 341 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~~ 341 (715)
|+|+.+++|+|+||||||||||||||||+| +.++++.+||..+..... ...|.|+|||+|||+|+|||||++.
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence 999999999999999999999999999975 788999999999987433 5679999999999999999999876
Q ss_pred ----cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCC-CCCCe
Q 005092 342 ----KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSE-SKPPR 416 (715)
Q Consensus 342 ----~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~~~~ 416 (715)
..+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... .....
T Consensus 159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~ 238 (356)
T cd01365 159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTE 238 (356)
T ss_pred ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCce
Confidence 4789999999999999999999999999999999999999999999999999999999999987654321 23456
Q ss_pred eEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCcCCCCccccccccccCCc
Q 005092 417 LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--------QGHIPFRGSKLTEVLRDSFVGN 488 (715)
Q Consensus 417 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~--------~~hIPyRdSKLTrLLrdsLgGn 488 (715)
..|+|+|||||||||..+++.. +.+..|+..||+||++|++||.+|... +.|||||+||||+||+|+|+||
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~-~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~ 317 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAE-GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGN 317 (356)
T ss_pred EEEEEEeeeccccccccccccc-chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCC
Confidence 7899999999999998776544 566779999999999999999999753 5899999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCC
Q 005092 489 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNP 526 (715)
Q Consensus 489 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~ 526 (715)
|+|+||+||||+..+++||++||+||.|+++|++.|..
T Consensus 318 s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 318 SKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 99999999999999999999999999999999988754
No 12
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-75 Score=671.52 Aligned_cols=325 Identities=40% Similarity=0.601 Sum_probs=286.2
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 275 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl 275 (715)
.+|.|+||+||++.+|...+..+.+.+..+...+....... ........|.||+||+++++|++||+.+++|||.+|+
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSL--PEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccc--cccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 57999999999999977777766666665544433221111 0011147899999999999999999999999999999
Q ss_pred cCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCccc-eeeEe
Q 005092 276 QRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK-LCMRE 348 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~-l~i~e 348 (715)
+|+|+||||||||||||||||.| +.++++.+||..|.+.. ...|.|.|||+|||||.|+|||++... +.++|
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE 162 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE 162 (675)
T ss_pred cCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence 99999999999999999999976 56899999999998855 778999999999999999999997654 99999
Q ss_pred cCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCC
Q 005092 349 DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 428 (715)
Q Consensus 349 d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAG 428 (715)
|+.++++|.||++..|.|.++++.+|..|.++|+++.|.+|..|||||+||+|.|........ . ..++|+||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAG 238 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAG 238 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---c-hhheehhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998754433 1 678999999999
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcCCCCccccccccccCCcceeEEEEecCCCCCChHh
Q 005092 429 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEH 506 (715)
Q Consensus 429 SER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~--~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eE 506 (715)
|||...+. +.+.+++||++||+||++||+||++|..+ ..||||||||||||||++|||||+|+|||||+|+..+++|
T Consensus 239 SERas~T~-~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 239 SERASRTG-NEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhh-ccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99966554 45566789999999999999999999887 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCc
Q 005092 507 TLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 507 TLsTLrfA~Rak~i~~~~~~~~ 528 (715)
|.+||+||+|+|+|++....+.
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~ 339 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNV 339 (675)
T ss_pred HHHHHHHHHHhhhcccccccce
Confidence 9999999999999988776554
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.3e-72 Score=609.20 Aligned_cols=319 Identities=39% Similarity=0.593 Sum_probs=287.7
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEc--CCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETY--SNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 273 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~--~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~ 273 (715)
.+|+|+||+||+++.|...+...++.++ ...+.++.+... .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 3799999999999999888888888774 367777766532 1235678999999999999999999999999999
Q ss_pred HhcCCCeEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCcc--
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRK-- 342 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~-- 342 (715)
+++|+|+||||||||||||||||+| +.++++.+||..+.... ...|.|+|||+|||+|+|+|||++..
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 155 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQKK 155 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCCCC
Confidence 9999999999999999999999976 67899999999887643 36799999999999999999998754
Q ss_pred ceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEE
Q 005092 343 KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422 (715)
Q Consensus 343 ~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 422 (715)
.+.+++++.++++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|++.............|+|+
T Consensus 156 ~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~ 235 (333)
T cd01371 156 KLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLN 235 (333)
T ss_pred ceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999876544334556789999
Q ss_pred EEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCC-CCcCCCCccccccccccCCcceeEEEEecCCCC
Q 005092 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG-HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 501 (715)
Q Consensus 423 fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~-hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 501 (715)
|||||||||..+++. .+.+..|+..||+||.+|++||++|.+++. |||||+||||+||+|+|+|||+|+||+||+|..
T Consensus 236 ~VDLAGsEr~~~~~~-~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~ 314 (333)
T cd01371 236 LVDLAGSERQSKTGA-TGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 314 (333)
T ss_pred EEECCCCCcccccCC-chhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcc
Confidence 999999999776654 456677999999999999999999998876 999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhcc
Q 005092 502 GCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 502 ~~~eETLsTLrfA~Rak~i 520 (715)
.+++||++||+||+|+|+|
T Consensus 315 ~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 315 YNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.2e-72 Score=611.58 Aligned_cols=325 Identities=36% Similarity=0.544 Sum_probs=289.4
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 273 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~ 273 (715)
.+|+|+||+||+...|...+...++.+.. +.+.+..+.. .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999998888888888754 4555543321 2235678999999999999999999999999999
Q ss_pred HhcCCCeEEEeeccCCCCCcccccC-----------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeec
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTMKP-----------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFD 336 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM~G-----------------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~D 336 (715)
+++|+|+||||||||||||||||+| +.++++.+||..+... ...|.|+|||+|||+|+|||
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeee
Confidence 9999999999999999999999965 5678888899888764 56799999999999999999
Q ss_pred ccCCc----cceeeEec--CCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC
Q 005092 337 LLSDR----KKLCMRED--GKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS 410 (715)
Q Consensus 337 LL~~~----~~l~i~ed--~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 410 (715)
||++. +++.++++ ..++++|.|++++.|.+++|++++|+.|.++|.++.|.+|..|||||+||+|.|.+.....
T Consensus 155 LL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~ 234 (352)
T cd01364 155 LLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI 234 (352)
T ss_pred CCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC
Confidence 99864 57899999 5889999999999999999999999999999999999999999999999999998875443
Q ss_pred CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcce
Q 005092 411 ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSR 490 (715)
Q Consensus 411 ~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsr 490 (715)
........|+|+|||||||||..+.+.. +.+..|+..||+||.+|++||.+|..++.|||||+||||+||+|+|+|||+
T Consensus 235 ~~~~~~~~s~l~~VDLAGsE~~~~~~~~-~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~ 313 (352)
T cd01364 235 SGEELVKIGKLNLVDLAGSENIGRSGAE-NKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTK 313 (352)
T ss_pred CCCccEEEEEEEEEECCCccccccccCc-chhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCce
Confidence 3334556899999999999997665544 456679999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc
Q 005092 491 TVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 491 T~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~ 528 (715)
|+||+||||+..+++||++||+||+|+++|++.|..+.
T Consensus 314 t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 314 TSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999987664
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.5e-72 Score=602.87 Aligned_cols=311 Identities=43% Similarity=0.638 Sum_probs=284.2
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEcCC-eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 275 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~-~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl 275 (715)
+|+|+||+||++..|.. ++.+++.+.++ ++.+..+ ...+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l 70 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSAL 70 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999874 56677777665 6666543 2468899999999999999999999999999999
Q ss_pred cCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc-cceeeEe
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR-KKLCMRE 348 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~-~~l~i~e 348 (715)
+|+|+||||||||||||||||. |+.++++.+||..+.... ...|.|++||+|||||+|||||++. +.+.+++
T Consensus 71 ~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~ 149 (321)
T cd01374 71 EGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQELRIRE 149 (321)
T ss_pred CCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCCceEEE
Confidence 9999999999999999999998 688999999999987643 5689999999999999999999987 8899999
Q ss_pred cCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCC
Q 005092 349 DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 428 (715)
Q Consensus 349 d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAG 428 (715)
++.++++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.............|+|+||||||
T Consensus 150 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 150 DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999876544333566789999999999
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCCCCccccccccccCCcceeEEEEecCCCCCChHh
Q 005092 429 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEH 506 (715)
Q Consensus 429 SER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~--~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eE 506 (715)
|||..+.+ .+.+..|+..||+||.+|++||++|..++ .|||||+||||+||+|+|+|||+|+||+||||...+++|
T Consensus 230 sE~~~~~~--~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (321)
T cd01374 230 SERASQTG--AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEE 307 (321)
T ss_pred CCccccCC--CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99987776 45667799999999999999999999986 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 005092 507 TLNTLRYADRVKSL 520 (715)
Q Consensus 507 TLsTLrfA~Rak~i 520 (715)
|++||+||+|+|+|
T Consensus 308 Tl~TL~~a~r~~~i 321 (321)
T cd01374 308 TLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999975
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=6.1e-72 Score=601.90 Aligned_cols=312 Identities=40% Similarity=0.587 Sum_probs=284.5
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcCC-eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 274 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~-~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~v 274 (715)
.+|+|+|||||++..|...+...++.+.++ +|++..+ ...+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~---------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~ 72 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS---------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDV 72 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC---------CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999987788888887664 6776654 256789999999999999999999999999999
Q ss_pred hcCCCeEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC-ccce
Q 005092 275 FQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKKL 344 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~l 344 (715)
++|+|+||||||||||||||||+| +.++++.+||..+........|.|++||+|||+|+++|||++ +..+
T Consensus 73 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l 152 (325)
T cd01369 73 LNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNL 152 (325)
T ss_pred HcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCc
Confidence 999999999999999999999965 667999999999987666678999999999999999999987 4679
Q ss_pred eeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEE
Q 005092 345 CMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 424 (715)
Q Consensus 345 ~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fV 424 (715)
.+++++.++++|.|++++.|.|++|+..+|..|.++|+++.|.+|..|||||+||+|+|.+.... ......|+|+||
T Consensus 153 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~---~~~~~~s~l~~V 229 (325)
T cd01369 153 QVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE---TGSKKRGKLFLV 229 (325)
T ss_pred eEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---CCCEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 234678999999
Q ss_pred ECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC-CCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 425 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 425 DLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
|||||||..+++ ..+.+..|+..||+||++|++||.+|.+++ .|||||+||||+||+|+|+|+|+|+||+||||+..+
T Consensus 230 DLAGsE~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~ 308 (325)
T cd01369 230 DLAGSEKVSKTG-AEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYN 308 (325)
T ss_pred ECCCCCcccccC-CcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCcccc
Confidence 999999976654 455667799999999999999999999887 999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc
Q 005092 504 CEHTLNTLRYADRVKSL 520 (715)
Q Consensus 504 ~eETLsTLrfA~Rak~i 520 (715)
++||++||+||+|+|+|
T Consensus 309 ~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 309 ESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.1e-71 Score=596.55 Aligned_cols=306 Identities=36% Similarity=0.567 Sum_probs=274.1
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEE-cC-----CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIET-YS-----NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 270 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~-~~-----~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~pl 270 (715)
+|+|+|||||+.+.|. +...++.+ +. ..+.+..+.. ..+.+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN------RGETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC------CCCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 5999999999998883 33444444 33 2666665531 235678999999999999999999999999
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC-ccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKK 343 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~ 343 (715)
|+.+++|+|+||||||||||||||||+ |+.++++.+||..+... ...+.|++||+|||+|+|+|||++ ...
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKKE 150 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCCC
Confidence 999999999999999999999999996 58899999999988653 367999999999999999999987 578
Q ss_pred eeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEE
Q 005092 344 LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 423 (715)
Q Consensus 344 l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~f 423 (715)
+.+++++.++++|.|++++.|.+++|+..+|..|.++|.++.|.+|..|||||+||+|.|.+.... ....|+|+|
T Consensus 151 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~ 225 (319)
T cd01376 151 LPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNL 225 (319)
T ss_pred ceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999886432 357899999
Q ss_pred EECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 424 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 424 VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
||||||||...+. ..+.+..|+..||+||++|++||.+|..+..|||||+||||+||+|+|+|||+|+||+||||...+
T Consensus 226 VDLAGsE~~~~~~-~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~ 304 (319)
T cd01376 226 IDLAGSEDNRRTG-NEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSF 304 (319)
T ss_pred EECCCCCcccccC-CccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhh
Confidence 9999999966554 455667799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhh
Q 005092 504 CEHTLNTLRYADRVK 518 (715)
Q Consensus 504 ~eETLsTLrfA~Rak 518 (715)
++|||+||+||+|+|
T Consensus 305 ~~eTl~TL~fa~r~~ 319 (319)
T cd01376 305 YQDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.3e-71 Score=598.52 Aligned_cols=315 Identities=35% Similarity=0.505 Sum_probs=279.0
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccc--cccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDL--TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 274 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~--~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~v 274 (715)
+|||+||+||+...+. ....+..++..++++.|+..... ....+.+.|.||+||++ ++|++||+.+++|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 5899999999987332 22233345578888888765443 34456688999999999 999999999999999999
Q ss_pred hcCCCeEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc----
Q 005092 275 FQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR---- 341 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---- 341 (715)
++|+|+||||||||||||||||+| +.++++.+||..+... ....|.|++||+|||||++||||++.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 999999999999999999999965 7789999999998753 45679999999999999999999876
Q ss_pred ---cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeE
Q 005092 342 ---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLV 418 (715)
Q Consensus 342 ---~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 418 (715)
+.+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... ......
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~ 234 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRL 234 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEE
Confidence 5789999999999999999999999999999999999999999999999999999999999998743322 235678
Q ss_pred EEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC-CCCcCCCCccccccccccCCcceeEEEEec
Q 005092 419 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGNSRTVMISCI 497 (715)
Q Consensus 419 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-~hIPyRdSKLTrLLrdsLgGnsrT~mIa~I 497 (715)
|+|+|||||||||..+++. .+....|+..||+||++|++||.+|..++ .|||||+||||+||+|+|+|||+|+||+||
T Consensus 235 s~l~~VDLAGsEr~~~~~~-~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGV-SGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEECCCCCccccccC-chhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 9999999999999776554 45567799999999999999999999988 999999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhh
Q 005092 498 SPSSGCCEHTLNTLRYADRVK 518 (715)
Q Consensus 498 SP~~~~~eETLsTLrfA~Rak 518 (715)
||+..+++|||+||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.7e-71 Score=599.32 Aligned_cols=312 Identities=41% Similarity=0.642 Sum_probs=281.0
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 274 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~v 274 (715)
+|+|+||+||+++.|...+...++.+.+ ..+++.. .+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999998777776766544 2444321 4689999999999999999999999999999
Q ss_pred hcCCCeEEEeeccCCCCCcccccC------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc-
Q 005092 275 FQRTKATCFAYGQTGSGKTYTMKP------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR- 341 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM~G------------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~- 341 (715)
++|+|+||||||||||||||||+| ++++++.+||..+........|.|+|||+|||||+|||||++.
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 149 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST 149 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc
Confidence 999999999999999999999965 6789999999999876656789999999999999999999864
Q ss_pred ---cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC-------C
Q 005092 342 ---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS-------E 411 (715)
Q Consensus 342 ---~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-------~ 411 (715)
..+.++++++++++|.|++++.|.+++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+..... .
T Consensus 150 ~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~ 229 (341)
T cd01372 150 SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGD 229 (341)
T ss_pred cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999999875531 1
Q ss_pred CCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC---CCCcCCCCccccccccccCCc
Q 005092 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGN 488 (715)
Q Consensus 412 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgGn 488 (715)
.......|+|+|||||||||..++.. .+.+.+|+..||+||.+|++||++|..++ .|||||+||||+||+|+|+||
T Consensus 230 ~~~~~~~s~l~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~ 308 (341)
T cd01372 230 DKNSTLTSKFHFVDLAGSERLKKTGA-TGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGN 308 (341)
T ss_pred CCCceeeEEEEEEECCCCcccccccC-chhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCC
Confidence 23456789999999999999766554 45667799999999999999999999876 799999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccc
Q 005092 489 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLS 521 (715)
Q Consensus 489 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~ 521 (715)
++|+||+||||...+++|||+||+||+|+|+|+
T Consensus 309 s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 309 SHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred ceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.1e-72 Score=624.05 Aligned_cols=339 Identities=36% Similarity=0.522 Sum_probs=303.5
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCC-------CChHHHHHHh
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE-------VSNDEVYRET 266 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~ 266 (715)
+..+|||+|||||++.+|+.....|++.++.+..+++.+..+..+......++|.||++|.+. +.|+.||..+
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 356899999999999999999999999999998888877666555554567899999999653 5799999999
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCceeecccC
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLS 339 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~ 339 (715)
+.-+|+.+|+|||+||||||||||||||||+| ++|+.+..||..|.. ......|.|.|||+|||||++||||+
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence 99999999999999999999999999999975 789999999999987 44567899999999999999999998
Q ss_pred Cc---cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCC-CCCCCC
Q 005092 340 DR---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADG-SESKPP 415 (715)
Q Consensus 340 ~~---~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~-~~~~~~ 415 (715)
++ +.++++++.--|++|.||+++.|.|++|+..++..|+++|+++.|+||..|||||+||.|.|.+.--+ ......
T Consensus 162 Pk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sg 241 (1714)
T KOG0241|consen 162 PKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSG 241 (1714)
T ss_pred CCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcch
Confidence 74 56999999999999999999999999999999999999999999999999999999999999876322 222344
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC------CCCCcCCCCccccccccccCCcc
Q 005092 416 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND------QGHIPFRGSKLTEVLRDSFVGNS 489 (715)
Q Consensus 416 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~------~~hIPyRdSKLTrLLrdsLgGns 489 (715)
..++||++||||||||+.+++..+ .+.+||.+||+||.+||.||.||+.. .++||||||.||+||||+|||||
T Consensus 242 eKvsklslVDLAgserasktga~g-~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNs 320 (1714)
T KOG0241|consen 242 EKVSKLSLVDLAGSERASKTGAAG-SRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNS 320 (1714)
T ss_pred hheeeeeEEEeccccccccccchh-hhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCc
Confidence 578999999999999988877665 46679999999999999999999642 46999999999999999999999
Q ss_pred eeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcccccc
Q 005092 490 RTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSS 533 (715)
Q Consensus 490 rT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~ 533 (715)
+|+||+||||++.+|+|||+|||||+|||.|++...++.++...
T Consensus 321 rTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar 364 (1714)
T KOG0241|consen 321 RTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 364 (1714)
T ss_pred eeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH
Confidence 99999999999999999999999999999999988777766443
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.4e-69 Score=581.38 Aligned_cols=315 Identities=37% Similarity=0.544 Sum_probs=281.0
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCceEEEcC---CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 195 VAKIKVVVRKRPLNKKELAKNEEDIIETYS---NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~---~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
.++|+|+||+||+.+.|. .....++.+.+ +.+.+..+ ..+.+.|.||+||+++++|++||+. +.|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHH-HHHHH
Confidence 378999999999998886 34445555544 33333322 2356789999999999999999998 69999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCceeecccCC----
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLFDLLSD---- 340 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~---- 340 (715)
+.+++|+|+||||||+|||||||||+| +.++++.+||..+..... ...|.|++||+|||+|+++|||++
T Consensus 71 ~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAP 150 (329)
T ss_pred HHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCC
Confidence 999999999999999999999999975 689999999999987543 678999999999999999999986
Q ss_pred ccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEE
Q 005092 341 RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGK 420 (715)
Q Consensus 341 ~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 420 (715)
.+.+.+++++.++++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+
T Consensus 151 ~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~ 227 (329)
T cd01366 151 KKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGK 227 (329)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999886543 34567899
Q ss_pred EEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCC
Q 005092 421 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPS 500 (715)
Q Consensus 421 L~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~ 500 (715)
|+||||||+||..+.... +.+..|+..||+||.+|++||.+|..+..|||||+||||+||+|+|+|+++|+||+||||.
T Consensus 228 l~~VDLaGsE~~~~~~~~-~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~ 306 (329)
T cd01366 228 LNLVDLAGSERLKKSGAT-GDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPL 306 (329)
T ss_pred EEEEECCCCccccccccc-chhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCc
Confidence 999999999998766544 4556799999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhhccccC
Q 005092 501 SGCCEHTLNTLRYADRVKSLSKG 523 (715)
Q Consensus 501 ~~~~eETLsTLrfA~Rak~i~~~ 523 (715)
..+++||++||+||+|+++|+++
T Consensus 307 ~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 307 ESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred hhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999764
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.9e-67 Score=566.67 Aligned_cols=315 Identities=42% Similarity=0.632 Sum_probs=286.0
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 275 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl 275 (715)
+|+|+||+||+...| ..+...++.+.+ +++.+.+++.. .....+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~ 75 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVL 75 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 599999999999877 445677888877 88999877643 234568999999999999999999999999999999
Q ss_pred cCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCceeecccCC---cccee
Q 005092 276 QRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLFDLLSD---RKKLC 345 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~---~~~l~ 345 (715)
+|+|+||||||+|||||||||+| +.++++.+||..+..... ...+.|++||+|||+|+|+|||++ ...+.
T Consensus 76 ~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~ 155 (328)
T cd00106 76 EGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLS 155 (328)
T ss_pred CCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcE
Confidence 99999999999999999999988 889999999999887433 567999999999999999999987 68899
Q ss_pred eEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEE
Q 005092 346 MREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 425 (715)
Q Consensus 346 i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 425 (715)
+++++++++++.|++++.|.|++|++.+|..|.++|.++.|..|..|||||+||+|+|.+........ ....|+|+|||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VD 234 (328)
T cd00106 156 LREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVD 234 (328)
T ss_pred EEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999875443221 36789999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 426 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~--~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
|||+|+..+.. ..+....|+..||+||.+|++||.+|..++ .|||||+||||+||||+|+|+++|+||+||+|...+
T Consensus 235 LaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~ 313 (328)
T cd00106 235 LAGSERAKKTG-AEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSEN 313 (328)
T ss_pred CCCCCcccccC-CchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 99999977654 556667799999999999999999999988 999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhh
Q 005092 504 CEHTLNTLRYADRVK 518 (715)
Q Consensus 504 ~eETLsTLrfA~Rak 518 (715)
++||++||+||+|+|
T Consensus 314 ~~eTl~tL~~a~r~~ 328 (328)
T cd00106 314 YDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.7e-67 Score=565.65 Aligned_cols=322 Identities=42% Similarity=0.618 Sum_probs=291.1
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEcCC---eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETYSN---SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 273 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~---~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~ 273 (715)
+|+|+|||||++..|...+...++.+.++ .+++..+. ...+...|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 59999999999999988888888888654 66666543 1235688999999999999999999999999999
Q ss_pred HhcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC-ccceee
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKKLCM 346 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~l~i 346 (715)
+++|+|+||||||+|||||||||+ |+.++++.+||..+........|.|+|||+|||+|+++|||++ ++.+.+
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i 154 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEI 154 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEE
Confidence 999999999999999999999998 6889999999999977666678999999999999999999985 567899
Q ss_pred EecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEEC
Q 005092 347 REDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDL 426 (715)
Q Consensus 347 ~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDL 426 (715)
++++.+++++.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||
T Consensus 155 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~-~~~~~~~~s~l~~VDL 233 (335)
T smart00129 155 REDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN-SSSGSGKASKLNLVDL 233 (335)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC-CCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999976332 2334578899999999
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC--CCCCCcCCCCccccccccccCCcceeEEEEecCCCCCCh
Q 005092 427 AGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN--DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCC 504 (715)
Q Consensus 427 AGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~--~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~ 504 (715)
||+||....+ ..+.+.+|+..||+||.+|++||.+|.+ ++.|||||+||||+||+++|+|+++|+||+||||...++
T Consensus 234 aGse~~~~~~-~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~ 312 (335)
T smart00129 234 AGSERASKTG-AEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNL 312 (335)
T ss_pred CCCCcccccc-ChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccch
Confidence 9999976654 4456677999999999999999999998 577999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccccCCCC
Q 005092 505 EHTLNTLRYADRVKSLSKGNNP 526 (715)
Q Consensus 505 eETLsTLrfA~Rak~i~~~~~~ 526 (715)
+||++||+||.|+++|++.|..
T Consensus 313 ~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 313 EETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCc
Confidence 9999999999999999998854
No 24
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1e-68 Score=616.76 Aligned_cols=329 Identities=36% Similarity=0.516 Sum_probs=292.1
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
.-.|+|||+|||||+.+.|.......++...+ ..+.+..+...- ....+.|.||+||+|.++|++||.. +.|+|
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv 385 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGD----KLEPQSFKFDKVFGPLASQDDVFEE-VSPLV 385 (670)
T ss_pred HhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCC----CCccccceeeeecCCcccHHHHHHH-HHHHH
Confidence 46799999999999999998765555555544 345655443221 1123479999999999999999988 89999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC-------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc---
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP-------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR--- 341 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G-------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~--- 341 (715)
+++|+|||+||||||||||||||||.| +.|+++..||..+......+.|.+.+||+|||||.|+|||++.
T Consensus 386 ~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~ 465 (670)
T KOG0239|consen 386 QSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYV 465 (670)
T ss_pred HHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccc
Confidence 999999999999999999999999977 6799999999999987778999999999999999999999875
Q ss_pred cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEE
Q 005092 342 KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKL 421 (715)
Q Consensus 342 ~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 421 (715)
.++.|+.+++++..|.+++.+.|.+.+++..+++.|.++|++++|.+|..|||||+||+|+|... +........|.|
T Consensus 466 ~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~---~~~t~~~~~g~l 542 (670)
T KOG0239|consen 466 GKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI---NELTGIRVTGVL 542 (670)
T ss_pred cceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc---ccCcccccccce
Confidence 58899999999999999999999999999999999999999999999999999999999999865 334456678999
Q ss_pred EEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCC
Q 005092 422 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 501 (715)
Q Consensus 422 ~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 501 (715)
+|||||||||..++... +.+.+|+..||+||++||+||.||+.++.|||||+||||+||+|||||++||+|+++|||..
T Consensus 543 ~LVDLAGSER~~~s~~t-G~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~ 621 (670)
T KOG0239|consen 543 NLVDLAGSERVSKSGVT-GERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAA 621 (670)
T ss_pred eEeecccCcccCcCCCc-hhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccH
Confidence 99999999997765554 55667999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhccccCCCCCccc
Q 005092 502 GCCEHTLNTLRYADRVKSLSKGNNPKKDI 530 (715)
Q Consensus 502 ~~~eETLsTLrfA~Rak~i~~~~~~~~~~ 530 (715)
.++.||+++|+||.|++.+..++..+...
T Consensus 622 ~~~~Etl~sL~FA~rv~~~~lG~a~~~~~ 650 (670)
T KOG0239|consen 622 AALFETLCSLRFATRVRSVELGSARKQVS 650 (670)
T ss_pred HHHhhhhhccchHHHhhceeccccccccc
Confidence 99999999999999999998877665433
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.8e-68 Score=574.70 Aligned_cols=316 Identities=41% Similarity=0.632 Sum_probs=277.4
Q ss_pred EeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEE
Q 005092 203 RKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATC 282 (715)
Q Consensus 203 RvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tv 282 (715)
||||++..|...+...++.+... ...................|.||+||+++++|++||+.++.|+|+.+|+|+|+||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQ--DSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETT--ETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCC--ccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 99999999999988887766532 1111112222333446789999999999999999999999999999999999999
Q ss_pred EeeccCCCCCcccccC--------CChhhHHHHHHHHhhhccC--cceEEEEEEEEEeCceeecccCCc-----cceeeE
Q 005092 283 FAYGQTGSGKTYTMKP--------LPLKASRDILRLMHHTYRS--QGFQLFVSFFEIYGGKLFDLLSDR-----KKLCMR 347 (715)
Q Consensus 283 fAYGqTGSGKTyTM~G--------l~~~a~~~If~~i~~~~~~--~~~~V~vS~~EIYnE~v~DLL~~~-----~~l~i~ 347 (715)
||||+|||||||||+| +.++++.+||..+...... ..|.|+|||+|||+|+|+|||++. +.+.++
T Consensus 79 ~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred EeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 9999999999999988 5789999999999875443 679999999999999999999876 579999
Q ss_pred ecCCCc-EEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCC-CCeeEEEEEEEE
Q 005092 348 EDGKQQ-VCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESK-PPRLVGKLSFID 425 (715)
Q Consensus 348 ed~~~~-v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~-~~~~~skL~fVD 425 (715)
+++..+ ++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+........ .....|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 999875 999999999999999999999999999999999999999999999999999876543321 125789999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 426 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~--~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
|||+||..+....++++..|+..||+||.+|++||.+|..+ ..|||||+||||+||||+|+|||+|+||+||+|+..+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 99999987776666777889999999999999999999999 8999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc
Q 005092 504 CEHTLNTLRYADRVKSL 520 (715)
Q Consensus 504 ~eETLsTLrfA~Rak~i 520 (715)
++||++||+||+++|+|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-64 Score=565.11 Aligned_cols=329 Identities=31% Similarity=0.513 Sum_probs=277.9
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEE-cCCeEEEecccccccc---cccccceeEEeeeecCCCCChHHHHHHhhh
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIET-YSNSLTVHETKLKVDL---TEYVEKHEFVFDAVLNEEVSNDEVYRETVE 268 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~-~~~~v~v~~~~~k~~~---~~~~~~~~F~FD~VF~~~asQeeVy~~~~~ 268 (715)
..+..|.||||+||+.. ..+...++.+ ...++.++.|.-.... ......+.|.|-+||+|+++|.+||+.++.
T Consensus 28 ~~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 36678999999999875 2233344444 5567777655432221 223345789999999999999999999999
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhh-c--------------------------
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHT-Y-------------------------- 315 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~-~-------------------------- 315 (715)
|+|.+++.|.|..+|+||.|||||||||.| +.|+++..||..+... +
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999975 7788888877655420 0
Q ss_pred -------------------------------------cCcceEEEEEEEEEeCceeecccCCc------cc-eeeEecCC
Q 005092 316 -------------------------------------RSQGFQLFVSFFEIYGGKLFDLLSDR------KK-LCMREDGK 351 (715)
Q Consensus 316 -------------------------------------~~~~~~V~vS~~EIYnE~v~DLL~~~------~~-l~i~ed~~ 351 (715)
.+..|.|||||+||||+-|||||.+. .+ ..+++|.+
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 01238999999999999999999653 22 67899999
Q ss_pred CcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCCCCC
Q 005092 352 QQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSER 431 (715)
Q Consensus 352 ~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER 431 (715)
+.++|.|+++|.|.+.+|++++|..|.++|+.++|.+|+.|||||+||+|.|.+..... ......+|.|+|||||||||
T Consensus 265 ~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 265 GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchh
Confidence 99999999999999999999999999999999999999999999999999998875442 23466889999999999999
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCcCCCCccccccccccCCcceeEEEEecCCCCCChHh
Q 005092 432 GADTTDNDKQTRMEGAEINKSLLALKECIRALDND-----QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEH 506 (715)
Q Consensus 432 ~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-----~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eE 506 (715)
...+. +.+.+++|+++||.||++||.||.+|+.+ +.+|||||||||++++.+|.|..+.+||+||+|...+|+|
T Consensus 344 t~rtq-~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 344 TNRTQ-NSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred ccccc-chhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 65555 45566779999999999999999999765 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCC
Q 005092 507 TLNTLRYADRVKSLSKGNNP 526 (715)
Q Consensus 507 TLsTLrfA~Rak~i~~~~~~ 526 (715)
+++.|+||.-+..+...+..
T Consensus 423 nl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHHHhcccccccCcc
Confidence 99999999999998765444
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-61 Score=550.42 Aligned_cols=316 Identities=38% Similarity=0.526 Sum_probs=279.7
Q ss_pred eCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEE
Q 005092 204 KRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCF 283 (715)
Q Consensus 204 vRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvf 283 (715)
|||+...|...+...|+.+.+++-.|.- .....|+||+||+...+|.++|+.+|.|+++.+|.|||+|++
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i----------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvl 70 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI----------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVL 70 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee----------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceee
Confidence 6999999999998888876553322211 135689999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccc----------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc---cceeeEecC
Q 005092 284 AYGQTGSGKTYTMK----------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR---KKLCMREDG 350 (715)
Q Consensus 284 AYGqTGSGKTyTM~----------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---~~l~i~ed~ 350 (715)
|||||||||||||. |++|++...+|..+..... ..|.|.|||+|||++.|+|||.+. ..+.+++ +
T Consensus 71 aygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~ 148 (913)
T KOG0244|consen 71 AYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-P 148 (913)
T ss_pred eecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-c
Confidence 99999999999993 7899999999999987543 679999999999999999999843 3467777 8
Q ss_pred CCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCCCC
Q 005092 351 KQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSE 430 (715)
Q Consensus 351 ~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAGSE 430 (715)
++++.+.|++++.|.+..++...|..|.-.|++++|.||..|||||+||+|.+++..... ......+||+||||||||
T Consensus 149 ~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSE 226 (913)
T KOG0244|consen 149 KGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSE 226 (913)
T ss_pred CCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccc
Confidence 899999999999999999999999999999999999999999999999999998754332 223456899999999999
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCC--CCcCCCCccccccccccCCcceeEEEEecCCCCCChHhHH
Q 005092 431 RGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG--HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTL 508 (715)
Q Consensus 431 R~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~--hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETL 508 (715)
|.+.+... +.+.+||.+||.+|++||+||.||...+. |||||+|||||||+|+||||++|+||+||||+..+.+||+
T Consensus 227 R~kkT~a~-gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~Etl 305 (913)
T KOG0244|consen 227 RVKKTKAE-GDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETL 305 (913)
T ss_pred cccccccc-hhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHH
Confidence 98777655 55677999999999999999999988776 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCccccccc
Q 005092 509 NTLRYADRVKSLSKGNNPKKDILSST 534 (715)
Q Consensus 509 sTLrfA~Rak~i~~~~~~~~~~~~~~ 534 (715)
+||+||+|+++|++.+.++.|+....
T Consensus 306 nTl~ya~Rak~iknk~vvN~d~~~~~ 331 (913)
T KOG0244|consen 306 NTLRYADRAKQIKNKPVVNQDPKSFE 331 (913)
T ss_pred HHHHHhhHHHHhcccccccccHHHHH
Confidence 99999999999999988887665443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-57 Score=517.20 Aligned_cols=315 Identities=40% Similarity=0.611 Sum_probs=275.4
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 272 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~ 272 (715)
...+++++++..|-...+ ..+...+ ..+.++.. ...+|.||+||++.++|++||+.+++|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~ 83 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS----------KEGTYAFDKVFGPSATQEDVYEETIKPLID 83 (568)
T ss_pred eecCceEEEeecCCCcch------heeecccccccccccc----------cceEEEEeeccCCCCcHHHHHHHhhhhHHH
Confidence 567799999999953222 2222211 12221111 156799999999999999999999999999
Q ss_pred HHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCccc-ee
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK-LC 345 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~-l~ 345 (715)
.++.||||||||||||||||||||.| +.++.+..||..++.......|.|.|||+|||||+++|||.+... +.
T Consensus 84 ~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~ 163 (568)
T COG5059 84 SLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLN 163 (568)
T ss_pred HHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccccc
Confidence 99999999999999999999999965 778999999999998776778999999999999999999987655 78
Q ss_pred eEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEE
Q 005092 346 MREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 425 (715)
Q Consensus 346 i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 425 (715)
++++...+|.|.|++++.|.+.+|++.+|+.|..+|+++.|.+|..|||||+||+|.+.+...... ....++|+|||
T Consensus 164 ~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~---~~~~~~l~lvD 240 (568)
T COG5059 164 IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---TSETSKLSLVD 240 (568)
T ss_pred ccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc---ceecceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999988754332 22337999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC--CCCCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN--DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 426 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~--~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
||||||...+ .....+..|++.||+||++||+||.+|.. +..|||||+|||||+|+++|||+|+|+|||||+|...+
T Consensus 241 LagSE~~~~~-~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~ 319 (568)
T COG5059 241 LAGSERAART-GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNS 319 (568)
T ss_pred eccccccchh-hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCc
Confidence 9999998776 55566778999999999999999999997 78899999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhccccCCCCCc
Q 005092 504 CEHTLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 504 ~eETLsTLrfA~Rak~i~~~~~~~~ 528 (715)
+++|.+||+||+|+|+|++.+..+.
T Consensus 320 ~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 320 FEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999988776553
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.8e-46 Score=373.93 Aligned_cols=173 Identities=42% Similarity=0.653 Sum_probs=155.4
Q ss_pred HHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceee
Q 005092 262 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLF 335 (715)
Q Consensus 262 Vy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~ 335 (715)
||+.++ |+|+.+++|+|+||||||||||||||||+| +.+++..+
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 999999999999999999999999999985 44433332
Q ss_pred cccCCccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCC
Q 005092 336 DLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPP 415 (715)
Q Consensus 336 DLL~~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 415 (715)
++.+++.|.++|+.+.|.+|..|||||+||+|++.+..........
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 8899999999999999999999999999999999887655433455
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEE
Q 005092 416 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMIS 495 (715)
Q Consensus 416 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa 495 (715)
...++|+|||||||||...+.. .+.+..|+..||+||.+|++||.+|.+++.|||||+||||+||||+|+|||+|+||+
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~-~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~ 182 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGA-EGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVA 182 (186)
T ss_pred eeeeeEEEEEccccccccccCC-chhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEE
Confidence 6789999999999999766554 455677999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 005092 496 CISP 499 (715)
Q Consensus 496 ~ISP 499 (715)
||||
T Consensus 183 ~vsP 186 (186)
T cd01363 183 CISP 186 (186)
T ss_pred EeCc
Confidence 9998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.42 E-value=7.4e-07 Score=103.65 Aligned_cols=251 Identities=23% Similarity=0.206 Sum_probs=137.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEE------cCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHh
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIET------YSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRET 266 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~------~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~ 266 (715)
++..+++|+|+|+|.......-. ..... -.+.+.+..+ ...+.....|.||.+|.....+..++..
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~--~tL~~a~rak~I~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 373 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETI--NTLKFASRAKSIKNKIQVNSS-----SDSSREIEEIKFDLSEDRSEIEILVFRE- 373 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHH--HHHHHHHHHhhcCCcccccCc-----CcchHHHHHHHhhhhhhhhhhhhHHHHH-
Confidence 45569999999999873311100 00000 0111111111 1122345679999999999988888876
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccccCCChhhHH----HHHHHHhh-hccCcceEEEEEEEEEeCceeecccCCc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASR----DILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLSDR 341 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~----~If~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~~~ 341 (715)
...+++.-++| +++|+++++++++||.--...... .++..... ..+.+.+...+-+.++|-..+.++....
T Consensus 374 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 449 (568)
T COG5059 374 QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEE 449 (568)
T ss_pred HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777 899999999999999532222222 22222222 1122233333334444411111222110
Q ss_pred --cce-eeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeE
Q 005092 342 --KKL-CMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLV 418 (715)
Q Consensus 342 --~~l-~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 418 (715)
+.. .+....+.+.....+.........+..... .+...+..+.+..|..++++|.+|.........- ... ..
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~~-~~ 524 (568)
T COG5059 450 LSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS---TKE-LS 524 (568)
T ss_pred cCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh---hHH-HH
Confidence 000 000000000000000001111111111111 4567788899999999999999998776433111 011 11
Q ss_pred EEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005092 419 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD 464 (715)
Q Consensus 419 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~ 464 (715)
+..|||||+||. -....+.+..+...+|++|..++.+|.++.
T Consensus 525 --~n~~~~~~~e~~--~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 525 --LNQVDLAGSERK--VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred --hhhhhccccccc--hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 689999999996 444555667799999999999999998864
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.0088 Score=68.10 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=62.7
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCC------C-------hhhHHHHHHHH
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL------P-------LKASRDILRLM 311 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl------~-------~~a~~~If~~i 311 (715)
..|..-.-|.|.-+|- ..++.||+.+-+|... -.-.|.|||||||||--+ + --.+..++..+
T Consensus 3 ~~F~l~s~f~PaGDQP----~AI~~Lv~gi~~g~~~-QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQP----EAIAELVEGIENGLKH-QTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcH----HHHHHHHHHHhcCcee-eEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 3577777888888887 4566777777666543 345699999999999431 1 12345678888
Q ss_pred hhhccCcceEEEEEEEEEeCcee
Q 005092 312 HHTYRSQGFQLFVSFFEIYGGKL 334 (715)
Q Consensus 312 ~~~~~~~~~~V~vS~~EIYnE~v 334 (715)
...+....+..+||||.-|+-.-
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHhCcCcceEEEeeeccccCccc
Confidence 88888889999999999998553
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.62 E-value=0.058 Score=55.60 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=32.1
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..|+||.-+.. ..++..|.. +..+.+.--..+| .+|-||++|+||||.|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 46899986643 357777754 5555554111234 478899999999998743
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.39 E-value=0.15 Score=55.03 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=27.7
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.|++..+.+--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 567888899999999999999999999998
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=90.02 E-value=0.22 Score=51.62 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=32.3
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..++||..+... ++.-+. -+.+.+-.+++..++-||++|+||||.+..
T Consensus 11 ~~~~fd~f~~~~-~~~~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADN-NLLLLD-----SLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCC-hHHHHH-----HHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 458999988654 332221 222233346788899999999999999854
No 35
>PRK06620 hypothetical protein; Validated
Probab=88.22 E-value=0.27 Score=50.61 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=33.9
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCC---eEEEeeccCCCCCccccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK---ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N---~tvfAYGqTGSGKTyTM~ 297 (715)
...|+||..+-.. +|+..|.. ++.+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSS-SNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecc-cHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 4568999876543 46667765 3334331 1343 459999999999999985
No 36
>PRK12377 putative replication protein; Provisional
Probab=86.95 E-value=0.47 Score=50.09 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=35.3
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
.+||........|..++.. +..+++.+..+. ..++-||++|+||||.+..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3677655444556666654 667777766553 5688999999999999854
No 37
>PRK06526 transposase; Provisional
Probab=86.82 E-value=0.33 Score=51.38 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=27.8
Q ss_pred cCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCC
Q 005092 253 LNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL 299 (715)
Q Consensus 253 F~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl 299 (715)
+.+..+...+..-.....++ .+.| |+.||++|+||||.+.++
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al 118 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHH
Confidence 44445555555544444554 3444 799999999999998654
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.79 E-value=1.1 Score=48.94 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=24.5
Q ss_pred CChHHHHHHhhhhhHHHHhc-CCCeEEEeeccCCCCCcccc
Q 005092 257 VSNDEVYRETVEPIVPIIFQ-RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~-G~N~tvfAYGqTGSGKTyTM 296 (715)
...++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 18 ~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 334444444322 2333343 45568999999999999987
No 39
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.36 E-value=0.37 Score=56.93 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=34.9
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..|+||..+-.. ++..+|. .+..+++..-.++|. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 568999765432 4555664 355555543345675 89999999999999854
No 40
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.30 E-value=0.52 Score=49.05 Aligned_cols=48 Identities=13% Similarity=0.331 Sum_probs=32.0
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..|+||.-+.. .|...+.. +..++. ......++-||++|+||||.+..
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45788866643 56666654 333332 22335799999999999999853
No 41
>PRK08116 hypothetical protein; Validated
Probab=86.09 E-value=0.43 Score=50.80 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=35.7
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhc--CCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQ--RTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~--G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..++||.-. .+..+...|.. ++..++.+.. ..+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 346787654 34556666654 6667776544 3455699999999999999843
No 42
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=1.4 Score=49.10 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=30.6
Q ss_pred HHHhcC-CCeEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEE
Q 005092 272 PIIFQR-TKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEI 329 (715)
Q Consensus 272 ~~vl~G-~N~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EI 329 (715)
..++.| .-..++.||.||||||.|+ +.+++.+........ .++|-+.+.
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 344444 4444999999999999988 456666655333222 555555554
No 43
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.21 E-value=0.51 Score=53.82 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=34.3
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
+..|+||.-+-. .++...|.. +..+.+. -..+|. +|-||++|+||||.+..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 456899976643 456666654 4444432 112565 99999999999999853
No 44
>PRK09087 hypothetical protein; Validated
Probab=84.76 E-value=0.53 Score=48.85 Aligned_cols=48 Identities=25% Similarity=0.181 Sum_probs=32.3
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
...|+||.-+... .|..+|.. ++....-.+..++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 3458898877543 35557763 222222235568999999999999985
No 45
>PRK05642 DNA replication initiation factor; Validated
Probab=84.65 E-value=0.65 Score=48.32 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=29.5
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM~G 298 (715)
..|+||.-+.. .+..++.. ++.+.+.. .+. ...++-||.+|+||||.+..
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~-~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGY-VERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC--ChHHHHHH-HHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 46899987743 23333332 22222211 121 24689999999999999853
No 46
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.51 E-value=0.73 Score=48.58 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=33.6
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..+||........|..++.. +...++.+..+. ..++-||.+|+||||.+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 45677654334456666654 555555554443 3789999999999999854
No 47
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.43 E-value=0.63 Score=52.21 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=32.2
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..|+||.-.- ...+...|.. +..+.+.--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 35689998442 2456656644 4444443111234 47889999999999984
No 48
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.05 E-value=0.35 Score=53.18 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 260 DEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 260 eeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..+++. +...|+.+-.+. -.++-||++|+||||.+..
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 344433 556777766554 5699999999999998854
No 49
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.49 E-value=1.5 Score=52.61 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=54.8
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCCC-------------hhhHHHHHHHHhh
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-------------LKASRDILRLMHH 313 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~-------------~~a~~~If~~i~~ 313 (715)
|....=|.|.-.|..-+.. +++.+-+|....+ .+|.||||||+||-.+. ...+..++..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4445557788888876665 4555556643333 78999999999994321 1123456666655
Q ss_pred hccCcceEEEEEEEEEeCce
Q 005092 314 TYRSQGFQLFVSFFEIYGGK 333 (715)
Q Consensus 314 ~~~~~~~~V~vS~~EIYnE~ 333 (715)
.+.......+||||.-|.-.
T Consensus 77 f~p~~~V~~f~sy~d~y~pe 96 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPE 96 (655)
T ss_pred hCCCCeEEEEeeecccCCcc
Confidence 55555688899999999854
No 50
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.45 E-value=0.57 Score=53.83 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=25.0
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..+..+++.-++-|+.-|+||||||.||+
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34556778899999999999999999995
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.31 E-value=0.72 Score=52.63 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=32.7
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..|+||.-.. ...+...|.. +..+.+.--..+| .+|-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 5688987442 2356666654 4445443212344 488899999999999853
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.12 E-value=0.96 Score=45.89 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=32.1
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..++||..... .+..+++. ++.++ .......|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 45788877632 45555554 33332 24567789999999999999884
No 53
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=82.98 E-value=0.72 Score=44.39 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=20.2
Q ss_pred hHHHHhcC-CCeEEEeeccCCCCCcccccC
Q 005092 270 IVPIIFQR-TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 270 lV~~vl~G-~N~tvfAYGqTGSGKTyTM~G 298 (715)
+++.+-.. ....++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 34333333 456677778999999999964
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.93 E-value=0.73 Score=52.78 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=32.1
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+||.-+.. .+++..|.. +..+++.--..+| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 4899986643 356666643 5555432111234 48999999999999984
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=82.80 E-value=0.92 Score=41.14 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=19.2
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334557889999999999877
No 56
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=82.65 E-value=0.69 Score=48.78 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=69.6
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeE-EEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEE
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKAT-CFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVS 325 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~t-vfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS 325 (715)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|||||.++..+ +... ...+ +-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkal--------l~~y----~~~G----LR 82 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKAL--------LNEY----ADQG----LR 82 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHH--------HHHH----hhcC----ce
Confidence 34555555544445555543 4667775543 667999999999988532 2211 1122 45
Q ss_pred EEEEeCceeeccc------CCccceeeEecCCCcEEEeccEEEE-eCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeE
Q 005092 326 FFEIYGGKLFDLL------SDRKKLCMREDGKQQVCIVGLQEYK-VSDVETIKELIEKGSSSRSTGTTGANEESSRSHAI 398 (715)
Q Consensus 326 ~~EIYnE~v~DLL------~~~~~l~i~ed~~~~v~v~gLte~~-V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~I 398 (715)
.+||..+.+.||- ..++.-.| +++.+|+--. =.+...+..+|+-|...| ....-+.+.|.|-|.|
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFI-------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFI-------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEE-------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 6888887766553 22221111 2333444211 123566777787776655 4455566777777776
Q ss_pred E
Q 005092 399 L 399 (715)
Q Consensus 399 f 399 (715)
=
T Consensus 155 ~ 155 (249)
T PF05673_consen 155 P 155 (249)
T ss_pred c
Confidence 4
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.79 E-value=1.2 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=17.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+....++-||++|+|||+++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 345567899999999999987
No 58
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.38 E-value=1.2 Score=45.56 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=31.9
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..|+||..+.. .++.++. .++.++.. ...+..++-||.+|+||||.+.
T Consensus 12 ~~~~~~d~f~~~--~~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAG--ENAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccC--CcHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 345889998732 2333443 34444431 2345679999999999999874
No 59
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.16 E-value=0.81 Score=49.78 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=33.1
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcC-CCeEEEeeccCCCCCcccccC
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G-~N~tvfAYGqTGSGKTyTM~G 298 (715)
.+||.+-.....+..++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3455443223356667664 46666665543 334699999999999999854
No 60
>PRK08181 transposase; Validated
Probab=79.84 E-value=1.1 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=17.8
Q ss_pred cCCCeEEEeeccCCCCCcccccCC
Q 005092 276 QRTKATCFAYGQTGSGKTYTMKPL 299 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~Gl 299 (715)
.|.| |+-||++|+||||.+.++
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHH
Confidence 4554 899999999999998543
No 61
>PRK08727 hypothetical protein; Validated
Probab=78.28 E-value=1.2 Score=46.24 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=27.6
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..|+||.-+.... + .... +..+. .....-.++-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~-~~~~~---~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQ-LQALA---AGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHH-HHHHH---hccCCCeEEEECCCCCCHHHHHHH
Confidence 4578888664332 3 2222 12221 122224599999999999999853
No 62
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=77.29 E-value=18 Score=34.74 Aligned_cols=78 Identities=15% Similarity=0.336 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH------------HHHHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAA------------GIMQLQ 694 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~------------~I~~Lq 694 (715)
....++|+++=|.+-...++.+++.++-++++|. .+++.....+..=..+|+.++++..+ .|..|.
T Consensus 38 ~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~ 115 (132)
T PF05597_consen 38 SKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVK--SRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALS 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4577888999999999999999999999998876 45566666677777888998888775 889999
Q ss_pred HHHHHHHHHHHH
Q 005092 695 TQLAHFQKRLKE 706 (715)
Q Consensus 695 ~rL~qfr~~L~e 706 (715)
.++.++..+|.+
T Consensus 116 ~rId~L~~~v~~ 127 (132)
T PF05597_consen 116 ARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHHHHHH
Confidence 999999888864
No 63
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.17 E-value=1 Score=40.39 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=14.7
Q ss_pred EEeeccCCCCCcccccC
Q 005092 282 CFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~G 298 (715)
++.+|.||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999843
No 64
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.08 E-value=4.1 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCCeEEEeeccCCCCCccccc
Q 005092 277 RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM~ 297 (715)
|-+.++|-||++|+|||.|+.
T Consensus 779 gpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 455678899999999999983
No 65
>PF13245 AAA_19: Part of AAA domain
Probab=76.05 E-value=1.5 Score=37.80 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.3
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
|...+. .+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 34445568999999999983
No 66
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.90 E-value=2.3 Score=44.99 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=32.6
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
+|.+..+-.....+..+|.. +..+++.+- ....++-||++|+||||....
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence 34433333334567777766 566665555 334467899999999998854
No 67
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.47 E-value=1.2 Score=45.55 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
-+.-+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999994
No 68
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.42 E-value=1.5 Score=51.56 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3456667788999999999999999984
No 69
>PRK10436 hypothetical protein; Provisional
Probab=74.06 E-value=1.7 Score=50.02 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..++..-++.|+..|+||||||.||.
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 345566778899999999999999994
No 70
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.80 E-value=1.8 Score=50.05 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=22.8
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445667777889999999999999994
No 71
>PRK09183 transposase/IS protein; Provisional
Probab=73.56 E-value=2.3 Score=45.11 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=26.5
Q ss_pred eeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCC
Q 005092 249 FDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL 299 (715)
Q Consensus 249 FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl 299 (715)
||.-|.+..+...+..-..-..| -.|.| ++-+|++|+||||.+..+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~i---~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSFI---ERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCch---hcCCe--EEEEeCCCCCHHHHHHHH
Confidence 44445555555444432222222 24544 667999999999998543
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.06 E-value=2.6 Score=48.34 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=33.7
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHH--hcC--CCeEEEeeccCCCCCcccccC
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPII--FQR--TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~v--l~G--~N~tvfAYGqTGSGKTyTM~G 298 (715)
+..|+||.-+-. .+++..|.. +..+.+.. ..| +| -+|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 456899976643 356655543 55554432 223 34 477899999999999853
No 73
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.06 E-value=2.4 Score=45.32 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.2
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.++++.+.--..+.|+-.|.|||||+.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 456777777788899999999999999999
No 74
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.82 E-value=1.2 Score=40.90 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=13.4
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999988
No 75
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.47 E-value=2 Score=47.43 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=19.9
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..++.--.+.|+-.|+||||||.||.
T Consensus 115 ~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 115 RELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 33444345779999999999999994
No 76
>PRK06921 hypothetical protein; Provisional
Probab=72.27 E-value=2.6 Score=44.86 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=22.5
Q ss_pred hhhhHHHHhc---CCCeEEEeeccCCCCCcccccC
Q 005092 267 VEPIVPIIFQ---RTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 267 ~~plV~~vl~---G~N~tvfAYGqTGSGKTyTM~G 298 (715)
+...++.+-. +..-.++-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4555655432 2345689999999999999853
No 77
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=72.09 E-value=2 Score=43.42 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445556665566778999999999983
No 78
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.55 E-value=1.7 Score=38.85 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 79
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=71.51 E-value=1.9 Score=43.06 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344555455567889999999999999988
No 80
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=71.50 E-value=2.2 Score=47.73 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.0
Q ss_pred CCeEEEeeccCCCCCccccc
Q 005092 278 TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~ 297 (715)
.++.|+..|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999994
No 81
>PF12846 AAA_10: AAA-like domain
Probab=71.46 E-value=1.6 Score=45.63 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=16.4
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567899999999999984
No 82
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.43 E-value=2 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=19.1
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++.+.+|.+ ++..|+||+|||....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHH
Confidence 344556666 7889999999999873
No 83
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.27 E-value=5.7 Score=46.27 Aligned_cols=35 Identities=43% Similarity=0.567 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 628 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLL 662 (715)
Q Consensus 628 ~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL 662 (715)
.....+|++||+++++||+.++.+++++..||+++
T Consensus 639 ~k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 639 HKAESDLEQEEDLLAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566799999999999999999999999999987
No 84
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.38 E-value=1.8 Score=43.74 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.4
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999999983
No 85
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.07 E-value=2.4 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.3
Q ss_pred CCCeEEEeeccCCCCCccccc
Q 005092 277 RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM~ 297 (715)
-..+.|+-.|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999994
No 86
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=69.89 E-value=2.6 Score=47.66 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=31.4
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..|+||.-... .++.-.|.. +..+-+ .-.+.---+|-||.+|+||||.|.
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa-~~~va~-~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA-AKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH-HHHHHh-ccCCcCCcEEEECCCCCCHHHHHH
Confidence 356899975543 355555543 222222 112223358999999999999994
No 87
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.78 E-value=2.7 Score=42.00 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCeEEEeeccCCCCCcccccC
Q 005092 278 TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~G 298 (715)
..-.++-||++|+||||...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH
Confidence 344689999999999998754
No 88
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=69.48 E-value=2.1 Score=45.10 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=16.0
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
.+.|+--|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 567788899999999999
No 89
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=69.33 E-value=2.8 Score=44.60 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=20.5
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..++..-.+.|+-.|.||||||.||.
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44455556678889999999999994
No 90
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=7.6 Score=43.26 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=61.7
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecc-cccccc----cccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHET-KLKVDL----TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 270 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~-~~k~~~----~~~~~~~~F~FD~VF~~~asQeeVy~~~~~pl 270 (715)
..-+.+|++.+.-.++.-. ..+.|....++.+|... ....|. -..-+.-.-+|+-|=+-+..-++|.+.+--||
T Consensus 93 ~g~~~vV~i~~~vd~~~L~-pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLE-PGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcC-CCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccc
Confidence 4457788888876655432 22333333333333211 011111 11111122344444333333366777766676
Q ss_pred HH-HHhc--CCC--eEEEeeccCCCCCcccc-----------------------cCCChhhHHHHHHHHhh
Q 005092 271 VP-IIFQ--RTK--ATCFAYGQTGSGKTYTM-----------------------KPLPLKASRDILRLMHH 313 (715)
Q Consensus 271 V~-~vl~--G~N--~tvfAYGqTGSGKTyTM-----------------------~Gl~~~a~~~If~~i~~ 313 (715)
.+ ..|. |.. --|+-||+.|+|||-.- .|-.++..+++|....+
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre 242 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELARE 242 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhh
Confidence 64 3444 443 45899999999999664 24556777777776654
No 91
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=68.13 E-value=6.1 Score=41.62 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=34.1
Q ss_pred EeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCCCCCC
Q 005092 363 KVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERG 432 (715)
Q Consensus 363 ~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER~ 432 (715)
.+.+.+++...+...... ..+. + ..-|.-++.|.|... ..-.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p----------~~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSP----------HVLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCC----------CCCceEEEeCCCcccc
Confidence 446888888888766542 1111 1 234566777777642 1236899999999653
No 92
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=68.03 E-value=28 Score=32.71 Aligned_cols=78 Identities=15% Similarity=0.319 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH------------HHHHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAA------------GIMQLQ 694 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~------------~I~~Lq 694 (715)
...++.|+++=+..-...+..+++.++-++++.. ..+++........-.+|+.++++... .|..|.
T Consensus 25 ~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~--~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~ 102 (118)
T TIGR01837 25 SKFFNRLVKEGELAEKRGQKRFDESVDAAREEVK--TALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALS 102 (118)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4566777777777777788888888888887764 11222222222333455555555543 889999
Q ss_pred HHHHHHHHHHHH
Q 005092 695 TQLAHFQKRLKE 706 (715)
Q Consensus 695 ~rL~qfr~~L~e 706 (715)
.++.++..+|.+
T Consensus 103 ~RI~~Le~~l~~ 114 (118)
T TIGR01837 103 AKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHH
Confidence 999999888875
No 93
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=11 Score=40.27 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=66.6
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCceE-EEcCC-eEEEecccccc--cccccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005092 195 VAKIKVVVRKRPLNKKELAKNEEDII-ETYSN-SLTVHETKLKV--DLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 270 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~~E~~~~~~~~i-~~~~~-~v~v~~~~~k~--~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~pl 270 (715)
...-.-+|||-....+|+-+....+. .-.++ -|.|..|.... ..-...++-.-.+..|=+-+..-++|-+.+--||
T Consensus 96 ttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelpl 175 (408)
T KOG0727|consen 96 TTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPL 175 (408)
T ss_pred ccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccc
Confidence 33456789998888888765432221 11122 22233222111 1111222333444445455555566666666666
Q ss_pred HHHHhc---CCC--eEEEeeccCCCCCcccc-----------------------cCCChhhHHHHHHHHhhh
Q 005092 271 VPIIFQ---RTK--ATCFAYGQTGSGKTYTM-----------------------KPLPLKASRDILRLMHHT 314 (715)
Q Consensus 271 V~~vl~---G~N--~tvfAYGqTGSGKTyTM-----------------------~Gl~~~a~~~If~~i~~~ 314 (715)
...=+- |.+ -.|+.||+.|+|||-.. .|-.|+..+|+|++..+.
T Consensus 176 t~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 176 THADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred hHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 653222 333 45899999999998654 255688888888887654
No 94
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.26 E-value=3.1 Score=46.97 Aligned_cols=53 Identities=17% Similarity=0.373 Sum_probs=35.4
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
...++|+.|-+.+..-+++-+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 34577888877655455555555555553 3444 2 3456889999999999987
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.74 E-value=6.8 Score=43.37 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=31.2
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCccccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM~ 297 (715)
..+.||.+.+-+.--+++.+.+..|+.. ..+. | ....|+-||++|+|||+++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4456666666544444454444444332 1222 2 23458899999999999873
No 96
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=66.31 E-value=47 Score=40.53 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=20.0
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|.||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 689999999999999999998
No 97
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.80 E-value=3.5 Score=45.17 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=18.7
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++..++.+. ..++-.|.||||||++|.
T Consensus 140 ~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 140 AIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 444555543 456666999999998874
No 98
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.35 E-value=4.7 Score=43.95 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=19.0
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|-..+..+.---.+-||+.|+|||.|.
T Consensus 48 L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 48 LKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333333434455788999999999998
No 99
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=65.08 E-value=5.2 Score=40.22 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999984
No 100
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.58 E-value=4 Score=42.50 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHhcCCCeEEEeeccCCCCCccccc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..+......++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445678889999999998873
No 101
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=64.37 E-value=2.9 Score=40.47 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=15.2
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++....+...+++-+|..|+|||+.+
T Consensus 15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 15 LLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 333334566788999999999999987
No 102
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=64.33 E-value=40 Score=32.22 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=50.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 626 SDDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAH 699 (715)
Q Consensus 626 ~~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~q 699 (715)
....+..||..-|.++ .+-+++++.+|+|...|. +=+.++..+.+.....|..||.+|..
T Consensus 65 vEKTi~til~LheKvl----~aKdETI~~lk~EN~fLK----------eAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 65 VEKTIGTILNLHEKVL----DAKDETIEALKNENRFLK----------EALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred hhhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4568899999999984 667999999999999988 23457888888889999999999865
No 103
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=63.95 E-value=13 Score=42.00 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=40.1
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhc----CCCeEEEeeccCCCCCcccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQ----RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~----G~N~tvfAYGqTGSGKTyTM 296 (715)
..++.||.+.+.----..+.+.++-.+++.++. ..---|.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 456888888777666677777777777777664 23355778999999999985
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=63.95 E-value=3.9 Score=45.94 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=30.2
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
.+.||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 455666655443334455444444443 2232 1 2346889999999999876
No 105
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=63.76 E-value=4.8 Score=44.69 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=28.0
Q ss_pred CChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..|+.+|+.++..+.. .....+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 4689999887665543 44456788999999999988
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=62.97 E-value=5.2 Score=43.05 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=26.1
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.||.+.+ |+++.+. +..++ -.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~-L~~~~---~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVER-LSRAV---DSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHH-HHHHH---hCCCCceEEEECCCCCCHHHHHH
Confidence 5676664 4444433 22222 23443457889999999999984
No 107
>PF13479 AAA_24: AAA domain
Probab=62.42 E-value=3.6 Score=42.05 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.4
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999874
No 108
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=62.05 E-value=31 Score=41.73 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.9
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999987
No 109
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=61.97 E-value=30 Score=41.94 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 261 EVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 261 eVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.||.-.-.....-+-.|.|.||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 355443332222233689999999999999999998
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.45 E-value=3 Score=37.97 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.5
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+-||+.|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999987
No 111
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.37 E-value=3.1 Score=42.31 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.4
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4678899999999998
No 112
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=61.17 E-value=3.8 Score=40.86 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
..+..|+.|||||+|+.
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 56678999999999884
No 113
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.04 E-value=4.1 Score=44.19 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=19.5
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++..++.+ ...|+-.|.||||||.+|.
T Consensus 124 ~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 124 VLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 34444443 4567889999999999984
No 114
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=60.04 E-value=34 Score=41.46 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=20.0
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 589999999999999999998
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.87 E-value=5.8 Score=37.85 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++..|.||||||.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 25 RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CcEEEECCCCCchhHHHH
Confidence 456778899999999873
No 116
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.10 E-value=5 Score=43.06 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=16.9
Q ss_pred cCC-CeEEEeeccCCCCCccccc
Q 005092 276 QRT-KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~-N~tvfAYGqTGSGKTyTM~ 297 (715)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 3566779999999999874
No 117
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=58.89 E-value=4.3 Score=45.43 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=26.8
Q ss_pred eEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEEeC
Q 005092 280 ATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYG 331 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYn 331 (715)
.-|+-||.+||||||+. +.+|+... .-.||++++|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~--------r~~l~~~n------~~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------RQLLRKLN------LENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH--------HHHHhhcC------CcceeeehHHhcc
Confidence 34689999999999997 33444431 2367888888775
No 118
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.60 E-value=10 Score=42.14 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=20.7
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|..+++|.+| +....||||||..+
T Consensus 37 cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 37 CIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhHHHhccccc--ccccccCCCcchhh
Confidence 56678899986 56779999999887
No 119
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.56 E-value=8.8 Score=43.28 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.6
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999983
No 120
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=58.30 E-value=40 Score=40.88 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.9
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 589999999999999999998
No 121
>PHA00729 NTP-binding motif containing protein
Probab=58.29 E-value=7.1 Score=40.81 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.1
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
++.+++.+..|.-..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 45566666665446899999999999998743
No 122
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.59 E-value=4.2 Score=36.83 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999886
No 123
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.55 E-value=6.7 Score=43.16 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=15.0
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.|+-.|.||||||.+|.
T Consensus 146 nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 146 NIVISGGTGSGKTTLAN 162 (323)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47888999999999994
No 124
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=57.38 E-value=12 Score=39.24 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=29.7
Q ss_pred cCCCCChHHHHHHhhhhhHHHHhcCC--CeEEEeeccCCCCCcccc
Q 005092 253 LNEEVSNDEVYRETVEPIVPIIFQRT--KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 253 F~~~asQeeVy~~~~~plV~~vl~G~--N~tvfAYGqTGSGKTyTM 296 (715)
|++-..|+.+-.. .+.+++.+.... -..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 4555678888876 777888776533 346899999999998654
No 125
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=56.63 E-value=6.5 Score=41.98 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCCChHHHHHHhhhhhHHHHhc--CCCeEEEeeccCCCCCccccc
Q 005092 255 EEVSNDEVYRETVEPIVPIIFQ--RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 255 ~~asQeeVy~~~~~plV~~vl~--G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+-..|+++.+. +..++..... +....++-||+.|+|||+...
T Consensus 5 ~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 5 EFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33456666655 3444443322 222347779999999998873
No 126
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=56.58 E-value=10 Score=40.64 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=14.7
Q ss_pred EEEeeccCCCCCcccccC
Q 005092 281 TCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~G 298 (715)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 555669999999999953
No 127
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.95 E-value=6.8 Score=39.03 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=19.3
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+++...+.. ...+.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 344444443 3457778999999999883
No 128
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=55.74 E-value=63 Score=39.33 Aligned_cols=21 Identities=29% Similarity=0.522 Sum_probs=19.9
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+.|.||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999987
No 129
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=55.52 E-value=7.1 Score=40.19 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=13.9
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
.+-.+++.|+.|||||+..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4558999999999999875
No 130
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=54.92 E-value=4.1 Score=36.96 Aligned_cols=16 Identities=38% Similarity=0.655 Sum_probs=14.1
Q ss_pred EEeeccCCCCCccccc
Q 005092 282 CFAYGQTGSGKTYTMK 297 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~ 297 (715)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999999884
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=54.14 E-value=13 Score=42.67 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.|+-||++|+|||.+..
T Consensus 219 gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAK 235 (438)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998873
No 132
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=54.02 E-value=5.4 Score=41.91 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=15.4
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
.+..++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6777888899999999999
No 133
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.78 E-value=8.1 Score=44.01 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=18.0
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.| ++..++||||||.+.
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHHH
Confidence 44568887 677889999999763
No 134
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=52.67 E-value=81 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=20.1
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999987
No 135
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.40 E-value=9.1 Score=37.96 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=17.3
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.+++|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34445777 577889999999874
No 136
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=52.40 E-value=7.9 Score=44.58 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=36.2
Q ss_pred HHhcCCCeEEEeeccCCCCCcccccC--------------------CChh-----hHHHHHHHHhhhccCcceEEEEEEE
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTMKP--------------------LPLK-----ASRDILRLMHHTYRSQGFQLFVSFF 327 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM~G--------------------l~~~-----a~~~If~~i~~~~~~~~~~V~vS~~ 327 (715)
.+.+|.+ ++|++|||||||+.... ..|+ .-+.+...+....+...|.-++-.+
T Consensus 107 ~i~~Grd--l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~ 184 (482)
T KOG0335|consen 107 IISGGRD--LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSV 184 (482)
T ss_pred eeecCCc--eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceee
Confidence 3445665 48999999999998621 1122 2244555555444445566677778
Q ss_pred EEeCc
Q 005092 328 EIYGG 332 (715)
Q Consensus 328 EIYnE 332 (715)
.+|++
T Consensus 185 ~~ygg 189 (482)
T KOG0335|consen 185 VVYGG 189 (482)
T ss_pred eeeCC
Confidence 88987
No 137
>PTZ00424 helicase 45; Provisional
Probab=52.02 E-value=7.7 Score=42.98 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=18.6
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34456788885 46789999999764
No 138
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=52.00 E-value=7.8 Score=37.00 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.1
Q ss_pred CCeEEEe-eccCCCCCcccc
Q 005092 278 TKATCFA-YGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfA-YGqTGSGKTyTM 296 (715)
....|++ .|.||+||||+-
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CCCEEEEeecCCCCcHHHHH
Confidence 3345555 599999999975
No 139
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=51.66 E-value=17 Score=43.68 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.1
Q ss_pred cCCCeEEEeeccCCCCCccccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+|..+|++--|..|||||.|+.
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~ 440 (767)
T KOG1514|consen 419 QGLGSCMYISGVPGTGKTATVL 440 (767)
T ss_pred CCCceeEEEecCCCCCceehHH
Confidence 3667799999999999999984
No 140
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=51.54 E-value=5.2 Score=37.38 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.8
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999987
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=51.45 E-value=8.4 Score=46.00 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=29.7
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
-+||.+++.+ .... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4677777543 3333 2445556677878999999999999877
No 142
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.44 E-value=8.9 Score=42.29 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=19.3
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.++..++.+ ...|+..|.||||||.+|.
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 444444443 2447788999999999983
No 143
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=51.26 E-value=6.2 Score=43.74 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=18.9
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++..+.. ....|+..|.||||||.+|.
T Consensus 154 ~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 154 FLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 3433333 34457888999999999984
No 144
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.06 E-value=8.2 Score=43.60 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=24.4
Q ss_pred ChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 258 sQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+.+... .+.+...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 34444432 2334444445555567779999999998873
No 145
>PRK06547 hypothetical protein; Provisional
Probab=50.68 E-value=11 Score=37.36 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=19.2
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.++..+..+.---|.-+|.+|||||+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444544455555666799999999876
No 146
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=50.19 E-value=6.6 Score=39.01 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57889999999999976
No 147
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=49.62 E-value=9 Score=42.43 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=15.8
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
+.|+-.|.||||||.++
T Consensus 174 ~NILisGGTGSGKTTlL 190 (355)
T COG4962 174 CNILISGGTGSGKTTLL 190 (355)
T ss_pred eeEEEeCCCCCCHHHHH
Confidence 77899999999999997
No 148
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.31 E-value=1.7e+02 Score=28.67 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 628 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQK 702 (715)
Q Consensus 628 ~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~ 702 (715)
+.+++|.++=..-... +.+.+-.++.|++-|...+.|+. ..+.....+|..||.+|.+.|.
T Consensus 50 a~~q~I~~~f~~~t~~----LRqqL~aKr~ELnALl~~~~pD~----------~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 50 AAWQKIHNDFYAQTSA----LRQQLVSKRYEYNALLTANPPDS----------SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544444322 33445667778877766677773 3344556688888888885444
No 149
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=49.24 E-value=12 Score=40.08 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=22.3
Q ss_pred HhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 265 ETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 265 ~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+..+|...=..-+.+|.-||.-|||||+.|
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 33333443322256788999999999999988
No 150
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=48.77 E-value=7.4 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+..|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999986
No 151
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=48.10 E-value=8.3 Score=38.81 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.1
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
..-..+|.-||.|||||+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34567899999999999887
No 152
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=47.98 E-value=10 Score=42.74 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=19.0
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667877 788899999999863
No 153
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.49 E-value=15 Score=39.45 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.0
Q ss_pred HHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 262 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 262 Vy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|+...+.||+ ..+.--+..+--||+|++|||.++
T Consensus 177 l~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 177 LCAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3455577777 556677788999999999999987
No 154
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=47.47 E-value=8.8 Score=48.97 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
+..+++.+-+|...+++. -+||||||+||..
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 344455555676554444 8999999999854
No 155
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=47.34 E-value=15 Score=41.68 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhHHHHhcC----CCeEEEeeccCCCCCcccc
Q 005092 260 DEVYRETVEPIVPIIFQR----TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 260 eeVy~~~~~plV~~vl~G----~N~tvfAYGqTGSGKTyTM 296 (715)
...|.....-+..++.+- ....|.-.|+||.|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344444444444444443 2566777899999999998
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=47.22 E-value=8.3 Score=41.34 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=15.8
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
---.|+-||++|+|||++-
T Consensus 150 APknVLFyGppGTGKTm~A 168 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred CcceeEEECCCCccHHHHH
Confidence 3456899999999999875
No 157
>PRK13764 ATPase; Provisional
Probab=46.87 E-value=9.7 Score=45.32 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.2
Q ss_pred CCeEEEeeccCCCCCcccccC
Q 005092 278 TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~G 298 (715)
....|+..|+||||||+++..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 344589999999999999953
No 158
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=46.57 E-value=12 Score=45.24 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.2
Q ss_pred hcCCCeEEEeeccCCCCCcccc
Q 005092 275 FQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM 296 (715)
-.+.|-||+-.|.+|||||.|+
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHH
T ss_pred ccccccceeeccccccccccch
Confidence 3589999999999999999996
No 159
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=46.46 E-value=12 Score=43.97 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=23.2
Q ss_pred hhhhHHHHhcCC--CeEEEeeccCCCCCccccc
Q 005092 267 VEPIVPIIFQRT--KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 267 ~~plV~~vl~G~--N~tvfAYGqTGSGKTyTM~ 297 (715)
|+..++..+.|. ...++-+|++|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 555566666554 3568889999999999983
No 160
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=46.41 E-value=14 Score=42.48 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=19.0
Q ss_pred ccCCcceeEEEEecCCCCCChHhHHHHHHHHH
Q 005092 484 SFVGNSRTVMISCISPSSGCCEHTLNTLRYAD 515 (715)
Q Consensus 484 sLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~ 515 (715)
.|.-..+..+|||++....+ +..|.+|-
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Al 346 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYAL 346 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHH
Confidence 35557889999999887643 44555553
No 161
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.38 E-value=11 Score=42.46 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.| |++-++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 345678988 456679999999763
No 162
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=46.34 E-value=7.6 Score=35.07 Aligned_cols=16 Identities=44% Similarity=0.353 Sum_probs=13.7
Q ss_pred EEeeccCCCCCccccc
Q 005092 282 CFAYGQTGSGKTYTMK 297 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~ 297 (715)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5778999999999874
No 163
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=46.23 E-value=7.5 Score=43.25 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=30.8
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
...|.|+.|.+ |+++=.. |+..+.+-.-+.|+-+|.+|||||+++.
T Consensus 11 ~~~~pf~~ivG----q~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 11 RPVFPFTAIVG----QEEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCCHHHHhC----hHHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 34689988866 4444333 3333334333468899999999999884
No 164
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=45.91 E-value=1.6e+02 Score=27.12 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 629 NLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQ 694 (715)
Q Consensus 629 ~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq 694 (715)
.+..+|+++..+ +++.++++++|-..|... =+..|..++.+|...+..|+
T Consensus 5 ~L~~~L~~~~~~-------~~~L~~ll~~e~~~l~~~---------d~~~l~~~~~~k~~l~~~l~ 54 (143)
T PF05130_consen 5 ELIELLEEQIEL-------LQELLELLEEEREALISG---------DIDELEELVEEKQELLEELR 54 (143)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 677778888877776621 23455666666665444333
No 165
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.83 E-value=13 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=18.7
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|..+++|.| |++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445678887 677789999999763
No 166
>PLN03025 replication factor C subunit; Provisional
Probab=45.67 E-value=15 Score=39.89 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.5
Q ss_pred CCCeEEEeeccCCCCCcccccC
Q 005092 277 RTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM~G 298 (715)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4333466699999999999843
No 167
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=45.37 E-value=15 Score=44.27 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=21.8
Q ss_pred hhhhhHHHHhc-----CCCeEEEeeccCCCCCccccc
Q 005092 266 TVEPIVPIIFQ-----RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 266 ~~~plV~~vl~-----G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+..+++.+.. |.+..++.. .||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 46667777766 344555444 99999999994
No 168
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=45.35 E-value=8.8 Score=40.40 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457889999999999874
No 169
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=44.87 E-value=15 Score=39.04 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=16.8
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454445788999999999887
No 170
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.54 E-value=9.8 Score=42.71 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=16.3
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...+.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577789999999999984
No 171
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=44.06 E-value=18 Score=40.31 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=21.4
Q ss_pred hhHHHHhcCC---CeEEEeeccCCCCCccccc
Q 005092 269 PIVPIIFQRT---KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 269 plV~~vl~G~---N~tvfAYGqTGSGKTyTM~ 297 (715)
|+++..+.|. --|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 6677778774 356665 999999998884
No 172
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=43.94 E-value=14 Score=40.12 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=23.8
Q ss_pred CChHHHHHHhhhhhHHHHhc--CCCeEEEeeccCCCCCccccc
Q 005092 257 VSNDEVYRETVEPIVPIIFQ--RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~--G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..|+++-+. +..++..... +....++-||++|+|||+...
T Consensus 28 vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 445555444 3333333322 222457789999999999884
No 173
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=43.91 E-value=15 Score=42.92 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.5
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+.||.+++....-.++.+. +.. +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 47899998876544444433 222 2357888999999999999865
No 174
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=43.09 E-value=20 Score=39.33 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..+.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999983
No 175
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.08 E-value=1.3e+02 Score=33.94 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEM 659 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em 659 (715)
...+++|++|-+++... ...||+.++-||+..
T Consensus 259 ~~~l~aileeL~eIk~~-q~~Leesye~Lke~~ 290 (455)
T KOG3850|consen 259 GAALDAILEELREIKET-QALLEESYERLKEQI 290 (455)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45689999988888654 456899998888754
No 176
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=42.80 E-value=9.7 Score=41.68 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
-...||+|||||++.+.
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35669999999999973
No 177
>PRK10536 hypothetical protein; Provisional
Probab=42.43 E-value=15 Score=39.26 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=25.7
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|.|-.|-+-+..|..... .+.+ +.-++..|.+||||||..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred cCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 555555555544544332 2223 348999999999999987
No 178
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.11 E-value=14 Score=40.96 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=26.1
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcC-CCeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 296 (715)
+||.|.+ |+.+-+ .+...+-.| ..-+++-||+.|+|||.+.
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 5666654 444433 333333444 3456789999999999887
No 179
>PF05729 NACHT: NACHT domain
Probab=41.81 E-value=12 Score=35.18 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.8
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47889999999999883
No 180
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=41.77 E-value=12 Score=39.04 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=18.1
Q ss_pred CCeEEEeeccCCCCCcccccCC
Q 005092 278 TKATCFAYGQTGSGKTYTMKPL 299 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~Gl 299 (715)
....++-||..|+|||++...+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhc
Confidence 3456999999999999988554
No 181
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.65 E-value=57 Score=27.67 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
++-|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667788999999999999999999999999998744
No 182
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=41.50 E-value=17 Score=39.59 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+.-....+.-++-||+.|||||.||.
T Consensus 16 ~~~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 16 EADKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred HhcccCCceEEEEECCCCCCHHHHHH
Confidence 33345677889999999999999983
No 183
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.42 E-value=17 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCCeEEEeeccCCCCCccccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555578889999999999874
No 184
>PRK04195 replication factor C large subunit; Provisional
Probab=41.19 E-value=16 Score=42.16 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.4
Q ss_pred hhhhHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
+...+.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 445555555554 567889999999999987
No 185
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.05 E-value=15 Score=36.83 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=19.7
Q ss_pred HHHhcCC---CeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
|.++.|. ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556664 678899999999999765
No 186
>PRK14974 cell division protein FtsY; Provisional
Probab=40.72 E-value=30 Score=38.37 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.5
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678889999999999983
No 187
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=40.55 E-value=2.1e+02 Score=26.58 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005092 648 VEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNV 709 (715)
Q Consensus 648 ~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee~ 709 (715)
+.++-.|.=+...+| .+.+|..-+.+.+..|+.=|.+|-+.|..+.+++...+.-|.+-+.
T Consensus 17 aRq~e~~FlqKr~~L-S~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~ 77 (106)
T PF11594_consen 17 ARQMEAFFLQKRFEL-SAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQN 77 (106)
T ss_pred HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455 7889999999999999999999999999999999999998876543
No 188
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=40.41 E-value=19 Score=44.35 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=20.3
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+.+|.|+.|.| +||||||-+-
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH
Confidence 45567999998888 9999999874
No 189
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.10 E-value=15 Score=39.25 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=22.3
Q ss_pred eeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 249 FDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 249 FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|..+|=|..+ -.-|...+..++ .. +--|+-.|++|||||-++
T Consensus 9 ~~~~~VpT~d-t~r~~~ll~~l~----~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 9 FNEILVPTVD-TVRYSYLLDLLL----SN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp ----T---HH-HHHHHHHHHHHH----HC-TEEEEEESSTTSSHHHHH
T ss_pred cceEEeCcHH-HHHHHHHHHHHH----Hc-CCcEEEECCCCCchhHHH
Confidence 3345544322 223334444444 33 557799999999999887
No 190
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.09 E-value=18 Score=41.49 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=18.5
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|..++.|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 3455678887 466679999999764
No 191
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=40.08 E-value=10 Score=37.59 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
...+.| -+++-.|++|.|||..+-
T Consensus 30 ~~~l~~--k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 30 KELLKG--KTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp HHHHTT--SEEEEECSTTSSHHHHHH
T ss_pred HHHhcC--CEEEEECCCCCCHHHHHH
Confidence 455666 466667999999999874
No 192
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.02 E-value=26 Score=38.45 Aligned_cols=37 Identities=27% Similarity=0.627 Sum_probs=26.2
Q ss_pred HHHHHHhhhhh-HHHHhcCCC---eEEEeeccCCCCCcccc
Q 005092 260 DEVYRETVEPI-VPIIFQRTK---ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 260 eeVy~~~~~pl-V~~vl~G~N---~tvfAYGqTGSGKTyTM 296 (715)
+.+=+.++-|+ ...+|.|.- ..|+-||+.|+||+|.-
T Consensus 143 eALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 143 EALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred HHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 33444445553 356777765 67999999999999976
No 193
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.99 E-value=30 Score=39.76 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=16.3
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
-..|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578888999999999983
No 194
>PRK00295 hypothetical protein; Provisional
Probab=39.81 E-value=82 Score=26.76 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
++=|..|+.++.+....|..|+.+|..+..+|++-+
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566778899999999999999999999999988743
No 195
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=39.21 E-value=16 Score=43.76 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.2
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455667876 688889999999874
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=39.14 E-value=25 Score=37.11 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=19.8
Q ss_pred hhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 266 TVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 266 ~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.+.++..+..|.+ |+-+|.+|+|||...
T Consensus 10 l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 10 VTSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 33444555555654 456899999999876
No 197
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.12 E-value=83 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
++=|..|+.++.+....|..|+.+|..+..+|++-
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677889999999999999999999999998774
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=39.06 E-value=12 Score=34.83 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=13.6
Q ss_pred EEeeccCCCCCccccc
Q 005092 282 CFAYGQTGSGKTYTMK 297 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~ 297 (715)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4668999999999874
No 199
>PRK02119 hypothetical protein; Provisional
Probab=39.00 E-value=83 Score=27.13 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
++=|..|+.++.+....|..|+.+|..+..+|++-
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677899999999999999999999999999773
No 200
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.90 E-value=25 Score=44.67 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
+.+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55667899999999887
No 201
>PRK00736 hypothetical protein; Provisional
Probab=38.73 E-value=87 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
++-|..|+.++.+....|..|+.+|..+..+|++-+
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777888999999999999999999999987643
No 202
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.49 E-value=3.1e+02 Score=28.82 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 672 LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 672 i~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ 705 (715)
+..|..+|+..++...+.|..|+.++..+....+
T Consensus 68 L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 68 LEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999998888888888888888765443
No 203
>PF13173 AAA_14: AAA domain
Probab=38.38 E-value=14 Score=34.41 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.3
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
-.++-+|+.|+|||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357889999999999983
No 204
>PRK04325 hypothetical protein; Provisional
Probab=37.37 E-value=1.9e+02 Score=24.91 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
++=|..|+.++.+....|..|+.+|..+..+|++-+
T Consensus 22 E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 22 EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778999999999999999999999999887743
No 205
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=37.33 E-value=23 Score=38.43 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=21.7
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+.+++..++.+. ..++-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 445666666554 466777999999999873
No 206
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.03 E-value=15 Score=30.78 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999887
No 207
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=36.96 E-value=20 Score=42.04 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=28.2
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
-.|+.+++.+.. ++.+...++......|+-||++|+|||+..
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 467777775422 233333445566677888999999999855
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=36.94 E-value=34 Score=38.27 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=25.7
Q ss_pred eecCCCCChHHHHHHhhhhhHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 251 AVLNEEVSNDEVYRETVEPIVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 251 ~VF~~~asQeeVy~~~~~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
.||+ +++.-+..+.-+ .....| .+..+.-.|++|||||...
T Consensus 52 ~~~G----~~~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 52 DFFG----MEEAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred hccC----cHHHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 6776 444444444333 233333 4567888999999999865
No 209
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.90 E-value=19 Score=38.98 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHhcCCCeEEEeeccCCCCCcccc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
++-+|+.-.|+|.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 456899999999999999999888
No 210
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.67 E-value=18 Score=40.87 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.5
Q ss_pred CChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..|+.+.-. .++|-.-+-.|.-...+-||+.|+|||..-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 346666644 555555555688888999999999999764
No 211
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.42 E-value=20 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 345678988 566889999999764
No 212
>PRK04406 hypothetical protein; Provisional
Probab=36.29 E-value=96 Score=26.92 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
++=|..|+.++.+....|..|+.+|..+..+|++-
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678899999999999999999999999998763
No 213
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=36.09 E-value=21 Score=42.92 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.9
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.++-.|++|||||+|+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999984
No 214
>PHA02244 ATPase-like protein
Probab=36.00 E-value=30 Score=38.95 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.1
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+...+-.|.+ |+-+|+||+|||+..
T Consensus 112 i~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 112 IAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3333334555 455899999999877
No 215
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=35.93 E-value=16 Score=42.81 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
.+|+.|-+-+..-+++.+.+..|+.. ..+. | .-..|+-||++|+|||++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHH
Confidence 34555544433334444444444433 2222 2 1234888999999999876
No 216
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.20 E-value=20 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=18.6
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+..+++|.|..+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 3456778988654 559999999664
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.10 E-value=3.4e+02 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 005092 670 NQLDDYVSRLNAILSQKAA-------GIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 670 sdi~~yV~~L~~ILs~Ka~-------~I~~Lq~rL~qfr~~L~ 705 (715)
.+.+.+..+|+++-+++.+ .|..||+||..+--.|.
T Consensus 410 knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 410 KNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 3456677777776666655 66666666665543333
No 218
>PHA02653 RNA helicase NPH-II; Provisional
Probab=35.05 E-value=27 Score=42.33 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=18.5
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
.++..+.+|.+ |+..|+||||||..
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 34455566765 58999999999975
No 219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.86 E-value=17 Score=40.02 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=15.5
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
..+-|+-.|+||||||+.-
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 4456889999999999754
No 220
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.85 E-value=24 Score=36.02 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred hhHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
+-++.++.| .+.+++.+|.+|||||...
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 446777765 6789999999999998643
No 221
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.81 E-value=36 Score=35.03 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHhhhhhHHHHhc-CCCeEEEeeccCCCCCcccc
Q 005092 260 DEVYRETVEPIVPIIFQ-RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 260 eeVy~~~~~plV~~vl~-G~N~tvfAYGqTGSGKTyTM 296 (715)
..+|..++.-|...+-. +....|.--|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34555544444443333 34445556699999999977
No 222
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=34.78 E-value=22 Score=43.40 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.2
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
-|-.|+.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667888999999999886
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.76 E-value=32 Score=39.24 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=15.9
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578889999999999984
No 224
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=34.67 E-value=26 Score=36.03 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=23.3
Q ss_pred hhhhHHHHhcCC---CeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
.-+-++.++.|. ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 445567777753 678888899999999866
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.32 E-value=17 Score=41.47 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356666999999999984
No 226
>PRK00846 hypothetical protein; Provisional
Probab=34.01 E-value=1.1e+02 Score=26.78 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
++-|..|+.++.+....|..|+.+|..+..+|++=+
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888899989999999999999999998744
No 227
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.98 E-value=2.7e+02 Score=28.07 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005092 640 LVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVL 710 (715)
Q Consensus 640 ~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee~l 710 (715)
++..|+..+++-++-+.+.++.++ .+|..| =|-+--.+|..+-++|..+.+++.++|..
T Consensus 89 lLe~~~~~l~~ri~eLe~~l~~ka------d~vvsY------qll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 89 QLEAQLNTITRRLDELERQLQQKA------DDVVSY------QLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hhhhhH------HHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444333 233444 12333457777778888888888777654
No 228
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=33.94 E-value=38 Score=41.06 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.9
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 589999999999999999997
No 229
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=33.78 E-value=11 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.7
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 378889999999999999866
No 230
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=33.58 E-value=18 Score=35.31 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.6
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
+...+-||.+|+|||..|.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3566789999999999883
No 231
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=33.42 E-value=17 Score=34.32 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.8
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
++-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999999875
No 232
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.35 E-value=3.2e+02 Score=30.01 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 643 AHRKQVEDTMNIVKEEMNLLVE-ADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 643 aHr~~~e~~~~~~k~Em~LL~~-~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ 705 (715)
.....+.+-.+-|+.|...|+. ++.++.-=.+++..|..-|..-...|..++..|.+++.+|+
T Consensus 177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555543 33344333456666666665555555555555555544443
No 233
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=33.26 E-value=37 Score=41.28 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred cCCCeEEEeeccCCCCCccccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|.|-||+.-|.+|||||.|..
T Consensus 91 ~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 91 KKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred cCCCceEEEecCCCCCchHHHH
Confidence 5899999999999999999973
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.07 E-value=30 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.5
Q ss_pred hhHHHHhcC-C--CeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQR-T--KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~G-~--N~tvfAYGqTGSGKTyTM 296 (715)
+=++.++.| . ...+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 446777864 2 456889999999999876
No 235
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.00 E-value=31 Score=40.25 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
+..++.|.| +++..+||||||.+
T Consensus 152 ip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHH
Confidence 455678887 57778999999965
No 236
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.96 E-value=2.5e+02 Score=33.66 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 672 LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 672 i~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
-++.+.+|+.+++...+.+..|+.+....|..|-+|
T Consensus 392 ~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e 427 (594)
T PF05667_consen 392 AEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEE 427 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 367889999999999999999999999988887665
No 237
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=32.86 E-value=24 Score=35.92 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.2
Q ss_pred hhhHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3556778886 5577889999999999876
No 238
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=32.82 E-value=40 Score=40.87 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.3
Q ss_pred cCCCeEEEeeccCCCCCccccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|.|-||+.-|.+|||||.|..
T Consensus 83 ~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 83 EKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred cCCCceEEEEcCCCCCeehHHH
Confidence 5899999999999999999973
No 239
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=32.76 E-value=20 Score=38.28 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.1
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999999876
No 240
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=32.62 E-value=26 Score=38.74 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=21.3
Q ss_pred hhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 268 EPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 268 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..++..++.+ .+.++-.|.||||||.+|.
T Consensus 168 ~~~L~~~v~~-~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAA-RLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhC-CCeEEEECCCCCCHHHHHH
Confidence 3445555554 3688889999999998873
No 241
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=32.60 E-value=18 Score=40.95 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCCcccccC
Q 005092 279 KATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~G 298 (715)
+--++.+|.||||||..|..
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~ 61 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRE 61 (410)
T ss_pred hccEEEEcCCCCCHHHHHHH
Confidence 44678999999999987643
No 242
>PRK00131 aroK shikimate kinase; Reviewed
Probab=32.57 E-value=20 Score=34.26 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999875
No 243
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.56 E-value=40 Score=41.32 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 639 DLVNAHRKQVEDTMNIVKEEMNLLV 663 (715)
Q Consensus 639 ~~~~aHr~~~e~~~~~~k~Em~LL~ 663 (715)
+.--.||.++|.-..++|.--..|.
T Consensus 672 a~W~~~~~~~~~~frll~~a~~~l~ 696 (767)
T PRK14723 672 ARWLLWAEAADGAFRTLRHAWDALP 696 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456788999988888887655554
No 244
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=32.52 E-value=26 Score=34.15 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEeeccCCCCCccccc------CCChhhHHHHHH
Q 005092 281 TCFAYGQTGSGKTYTMK------PLPLKASRDILR 309 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~ 309 (715)
.|+..|..|||||+... |+......++++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 46778999999999762 554444445443
No 245
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.34 E-value=19 Score=41.86 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..+.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467778999999999994
No 246
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=32.12 E-value=39 Score=40.93 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred cCCCeEEEeeccCCCCCccccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|.|-||+.-|.+|||||.|..
T Consensus 84 ~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred cCCCceEEEEcCCCCCeehHHH
Confidence 6899999999999999999973
No 247
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.99 E-value=24 Score=42.71 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 254 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 254 ~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.....|+++++.+... + ....++.+|+||||||.+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 144 TLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHH
Confidence 3344566665553322 1 3345899999999999775
No 248
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.98 E-value=1.4e+02 Score=34.65 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 646 KQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLA 698 (715)
Q Consensus 646 ~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~ 698 (715)
+++|+.++.+|.|+.++.. -...++..|+.+.+++..|++|+.
T Consensus 79 sELEKqLaaLrqElq~~sa----------q~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNK----------QRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888988886651 122346666677777777777773
No 249
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.85 E-value=2.8e+02 Score=32.37 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKE 657 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~ 657 (715)
-+++++-++.+++.+..||..|....|-+++
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~e 366 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTE 366 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999988777777665
No 250
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=31.83 E-value=19 Score=38.58 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCC----CcCCCCccccc----cccccC----CcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCC
Q 005092 458 ECIRALDNDQGH----IPFRGSKLTEV----LRDSFV----GNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNN 525 (715)
Q Consensus 458 ~vI~AL~~~~~h----IPyRdSKLTrL----LrdsLg----GnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~ 525 (715)
.|++||+...+. =||- .|--+ ||+-|. .-++|++.+| .+.+| .+++|+|+.-+..+..
T Consensus 145 Gv~RALAadP~ilLMDEPFg--ALDpI~R~~lQ~e~~~lq~~l~kTivfVT-----HDidE---A~kLadri~vm~~G~i 214 (309)
T COG1125 145 GVARALAADPPILLMDEPFG--ALDPITRKQLQEEIKELQKELGKTIVFVT-----HDIDE---ALKLADRIAVMDAGEI 214 (309)
T ss_pred HHHHHHhcCCCeEeecCCcc--ccChhhHHHHHHHHHHHHHHhCCEEEEEe-----cCHHH---HHhhhceEEEecCCeE
Confidence 578888766543 2442 22222 333221 2467888777 45555 5789999987765543
No 251
>PRK04328 hypothetical protein; Provisional
Probab=31.77 E-value=32 Score=36.12 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.4
Q ss_pred hhhHHHHhcC---CCeEEEeeccCCCCCccc
Q 005092 268 EPIVPIIFQR---TKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 268 ~plV~~vl~G---~N~tvfAYGqTGSGKTyT 295 (715)
-+-++.++.| ...+++-+|.+|||||..
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3456788877 578899999999999854
No 252
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.60 E-value=2.5e+02 Score=25.46 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 672 LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 672 i~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
+++.+..++..+++=...+..|+.+|..++.+|++
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555777777777777777664
No 253
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=31.55 E-value=29 Score=38.39 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.+.+|.+..++...+||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34566788778888999999999874
No 254
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=31.50 E-value=30 Score=40.55 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=31.2
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKT 293 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKT 293 (715)
...|+||.+.+....=.++- .++ .-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----ELA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HHH-HhhcCCCCcEEEecCCCccHH
Confidence 35699999998754322222 222 335689999999999999995
No 255
>PHA01747 putative ATP-dependent protease
Probab=31.49 E-value=23 Score=39.83 Aligned_cols=95 Identities=18% Similarity=0.322 Sum_probs=57.2
Q ss_pred HHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCce------ee
Q 005092 262 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGK------LF 335 (715)
Q Consensus 262 Vy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~------v~ 335 (715)
++-.-+-|+|+.-..+.|.-++=.|+.||||||+..-+ ...+ .+ -|++++ +|
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f~ei------------s~fs---p~-------~iSGG~~TvA~LFy 230 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTFVIL------------QELF---NF-------RYYTEPPTYANLVY 230 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHHHHh------------hhcC---Cc-------eeeCCCCchHHheE
Confidence 34444668888666788889999999999999987321 1000 00 013332 34
Q ss_pred cccCCccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhcc
Q 005092 336 DLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSR 381 (715)
Q Consensus 336 DLL~~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R 381 (715)
|.-.....+.-+.|. |.+..+..+.-.+..++..+|+.+..+-
T Consensus 231 N~~t~~~GLVg~~D~---VaFDEVa~i~f~~~kdiv~IMKdYMesG 273 (425)
T PHA01747 231 DAKTNALGLVFLSNG---LIFDEIQTWKDSNMRAINSTLSTGMENC 273 (425)
T ss_pred ecCCCceeEEeeccE---EEEEccccccCCCHHHHHHHHHHHhhcc
Confidence 544444444444442 4455555555677788888888776653
No 256
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.27 E-value=35 Score=34.77 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=23.5
Q ss_pred hhhhHHHHhcCC---CeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
.-+-++.++.|. ...+.-+|.+|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 445578888753 567899999999999876
No 257
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.20 E-value=2.6e+02 Score=29.41 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH-HHhhhhcCCCCC---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 005092 646 KQVEDTMNIVKEEM-NLLVEADQPGNQ---LDDYVSRLNAILSQKA-------AGIMQLQTQLAHFQKR 703 (715)
Q Consensus 646 ~~~e~~~~~~k~Em-~LL~~~D~pgsd---i~~yV~~L~~ILs~Ka-------~~I~~Lq~rL~qfr~~ 703 (715)
.....+++.|.+|. .++...-+...| +++-|.+++.=..+.. +++..|++++...|..
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444443 333333333333 4444444443333333 3444455555554444
No 258
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=31.15 E-value=32 Score=34.81 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred hhhhHHHHhcCC---CeEEEeeccCCCCCccccc
Q 005092 267 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 267 ~~plV~~vl~G~---N~tvfAYGqTGSGKTyTM~ 297 (715)
.-+-++.++.|. ...+.-+|.+|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 345677888653 5677889999999998773
No 259
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=4.2e+02 Score=27.96 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 005092 639 DLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAA-------GIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 639 ~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~-------~I~~Lq~rL~qfr~~L~ 705 (715)
...+.|-.-++.+.+..+++++|++++.+- .+.+.+...++++|-+ .|..+|++|..++..+|
T Consensus 41 ~~~nS~~efar~lS~~~~e~e~l~~~l~et----ene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q 110 (246)
T KOG4657|consen 41 RSMNSLVEFARALSQSQVELENLKADLRET----ENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQ 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777766644332 2222333334444433 55566666666555444
No 260
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=31.00 E-value=19 Score=41.67 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=28.7
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM~ 297 (715)
..+||.|.+.+...+++.+ ++..+-. ..+. | ..-.|+-||++|||||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4677877765443333332 2222111 0111 2 23358889999999999974
No 261
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.76 E-value=34 Score=36.60 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999983
No 262
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.75 E-value=2.2e+02 Score=32.42 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 005092 676 VSRLNAILSQKA----AGIMQLQTQLAHFQKRLKEHNV 709 (715)
Q Consensus 676 V~~L~~ILs~Ka----~~I~~Lq~rL~qfr~~L~eee~ 709 (715)
+.+...+.++|= ..|.+||.+|.+++++|+|=|.
T Consensus 46 ~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 46 AARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777664 3999999999999999998654
No 263
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=30.74 E-value=26 Score=36.70 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.2
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
+-+...+|++|||||.|+.
T Consensus 32 ~~~~~~~GpagtGKtetik 50 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIK 50 (231)
T ss_dssp TTEEEEESSTTSSHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHH
Confidence 3444579999999999984
No 264
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=30.72 E-value=23 Score=41.50 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
-||..|+|+|||||--
T Consensus 193 Ii~H~GPTNSGKTy~A 208 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA 208 (700)
T ss_pred EEEEeCCCCCchhHHH
Confidence 4899999999999986
No 265
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.62 E-value=2e+02 Score=33.38 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ 705 (715)
+.+-..|..-.++-.+.+.+|+.+|.+++.+|.
T Consensus 108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 108 QSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444445577788888888888884
No 266
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=30.59 E-value=22 Score=34.71 Aligned_cols=15 Identities=40% Similarity=0.611 Sum_probs=13.3
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999874
No 267
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=30.56 E-value=24 Score=39.01 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
|.|..|.+ |+++ ..-|+-.+++..-+-|+-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 44555544 4433 3445556667666678899999999999874
No 268
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.44 E-value=25 Score=39.07 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.5
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
++..|.||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 269
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=30.43 E-value=22 Score=43.38 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=29.7
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhcC----CCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQR----TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G----~N~tvfAYGqTGSGKTyTM 296 (715)
..++||.|-+-+..-+.+.+.+..|+-. .++.. ....|+-||++|||||+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 3467777765443334444333333221 22222 2246889999999999876
No 270
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=30.26 E-value=34 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
-..+--|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 455678999999999984
No 271
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=30.13 E-value=32 Score=40.73 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=18.7
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+|..+++|.|+ ++.-+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 34556789874 55669999999874
No 272
>PRK06696 uridine kinase; Validated
Probab=29.95 E-value=43 Score=34.31 Aligned_cols=20 Identities=30% Similarity=0.154 Sum_probs=15.9
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
+....|.--|.+|||||+..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 45566777899999999876
No 273
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=29.85 E-value=33 Score=40.89 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=17.0
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
|..+++|.++. +..+||+|||.+
T Consensus 34 i~~il~g~dvl--v~apTGsGKTl~ 56 (607)
T PRK11057 34 IDAVLSGRDCL--VVMPTGGGKSLC 56 (607)
T ss_pred HHHHHcCCCEE--EEcCCCchHHHH
Confidence 34556888864 457999999975
No 274
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.80 E-value=60 Score=36.10 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.1
Q ss_pred CCeEEEeeccCCCCCcccccC
Q 005092 278 TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~G 298 (715)
.|-.|+-.|+.|+|||....+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHH
Confidence 455677889999999998765
No 275
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=29.72 E-value=21 Score=43.73 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.7
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5568899999999999994
No 276
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.61 E-value=37 Score=35.20 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.6
Q ss_pred hhHHHHhcC---CCeEEEeeccCCCCCccc
Q 005092 269 PIVPIIFQR---TKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 269 plV~~vl~G---~N~tvfAYGqTGSGKTyT 295 (715)
+-++.++.| ...+++-+|.+|||||..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 445677764 457889999999999963
No 277
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.61 E-value=38 Score=41.01 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 254 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 254 ~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.....|+.+...+.. +.-.+...-++..|+||||||...
T Consensus 261 ~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 455567666555443 333455567899999999999865
No 278
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.43 E-value=43 Score=36.63 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.2
Q ss_pred eEEEeeccCCCCCcccc-----------------------cCCChhhHHHHHHHHhhh
Q 005092 280 ATCFAYGQTGSGKTYTM-----------------------KPLPLKASRDILRLMHHT 314 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM-----------------------~Gl~~~a~~~If~~i~~~ 314 (715)
-.|+-||..|+|||-.- .|-.++.++.||+...+.
T Consensus 220 KGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred CeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 35889999999999754 256678888888887654
No 279
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.31 E-value=2.7e+02 Score=33.31 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=8.2
Q ss_pred EEEEEEEECCCC
Q 005092 418 VGKLSFIDLAGS 429 (715)
Q Consensus 418 ~skL~fVDLAGS 429 (715)
.--|.++||-|-
T Consensus 254 TtgiAvldldGe 265 (652)
T COG2433 254 TTGIAVLDLDGE 265 (652)
T ss_pred eeeEEEEecCCc
Confidence 345788888774
No 280
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=29.30 E-value=37 Score=42.06 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=20.7
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
...+++.+-++. .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 455666665544 4778999999999886
No 281
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=29.20 E-value=34 Score=32.80 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999876
No 282
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=29.03 E-value=25 Score=42.43 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=30.3
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+.|+.+++....-..+.+. ++. +...+..|+-+|.+|||||+.-
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 346777777765433444333 222 3456788999999999999854
No 283
>PRK07261 topology modulation protein; Provisional
Probab=29.00 E-value=24 Score=34.73 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+-.|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999866
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.86 E-value=46 Score=38.11 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999983
No 285
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=28.85 E-value=23 Score=39.03 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.4
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.++-.+.. +.-|+-.|.+|+|||...
T Consensus 56 ~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 56 AICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 34444433 345888999999999876
No 286
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.67 E-value=24 Score=33.23 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999875
No 287
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=28.66 E-value=46 Score=34.75 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.7
Q ss_pred hhhhHHHHhc--CCCeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQ--RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~--G~N~tvfAYGqTGSGKTyTM 296 (715)
+..|++.+.. .....|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 67788999999999999876
No 288
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=28.66 E-value=23 Score=38.08 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
-++-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999876
No 289
>CHL00181 cbbX CbbX; Provisional
Probab=28.58 E-value=23 Score=38.18 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.9
Q ss_pred EEeeccCCCCCccccc
Q 005092 282 CFAYGQTGSGKTYTMK 297 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~ 297 (715)
++-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999999873
No 290
>PRK14127 cell division protein GpsB; Provisional
Probab=28.42 E-value=1.7e+02 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=25.8
Q ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 667 QPGNQ---LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 667 ~pgsd---i~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
-.||+ +|+|...+-.=++.=.+++..|++++.+++.+|.+
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 56676666665566566666777766666666654
No 291
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=28.32 E-value=24 Score=34.43 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.++-.|++|||||.++.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57788999999999873
No 292
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=28.20 E-value=1.4e+02 Score=30.19 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 628 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 628 ~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
+.+.++|+....-+......++.+++.|+.=..-|. ..-.....-+.++..+|.-.-..|..||.+|..++...++
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~---~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQ---KDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444443222121 2234467778999999999999999999999999876654
No 293
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=28.19 E-value=4.3e+02 Score=29.96 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 005092 676 VSRLNAILSQKA----AGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 676 V~~L~~ILs~Ka----~~I~~Lq~rL~qfr~~L~eee 708 (715)
+.+...++++|= ..|.+||.+|.+++++|++=|
T Consensus 82 ~~rIkq~FEkkNqksahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 82 VARIKQVFEKKNQKSAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555543 399999999999999999866
No 294
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.87 E-value=38 Score=41.04 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.5
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
....|+-||+.|+||||..
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 4467999999999999986
No 295
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=27.84 E-value=24 Score=44.06 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.1
Q ss_pred CCeEEEeeccCCCCCcccccC
Q 005092 278 TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~G 298 (715)
.|+-.+..|+||||||++|..
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CcccEEEECCCCCCHHHHHHH
Confidence 477889999999999999943
No 296
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.74 E-value=3.7e+02 Score=23.48 Aligned_cols=66 Identities=33% Similarity=0.469 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPG--NQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRL 704 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pg--sdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L 704 (715)
++.+..+.+.++.+ ...|+...+-+++ +..++++. .+++.|+.+|..+-. .+..+..++..++.++
T Consensus 20 ~~~l~el~~sQ~~L----~~~i~~~~~~L~~----~~~~~~~~~~~~~~~y~~KL~~ikk----rm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 20 DQQLQELRQSQEEL----LQQIDRLNEKLKE----LNEVEQINEPFDLDPYVKKLVNIKK----RMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHhhhhhhHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45666666666666 3334443333333 33333333 345669888877643 3444455555544443
No 297
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.62 E-value=4.2e+02 Score=23.70 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005092 669 GNQLDDYVSRLNAILSQKA 687 (715)
Q Consensus 669 gsdi~~yV~~L~~ILs~Ka 687 (715)
-.+|..++..|..+|++..
T Consensus 41 ~~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 41 EAQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 298
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=27.57 E-value=27 Score=34.29 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999765
No 299
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.54 E-value=31 Score=40.18 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=25.6
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCe-EEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKA-TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~-tvfAYGqTGSGKTyTM 296 (715)
+||.|.+ |+.+.+ .|-+.+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliG----Qe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVG----QDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcC----cHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 5666654 443332 233333345443 7899999999999976
No 300
>PRK14531 adenylate kinase; Provisional
Probab=27.53 E-value=24 Score=34.91 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
-|+.+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999874
No 301
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.97 E-value=24 Score=38.61 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
..+|+-.|.||||||++|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3467889999999999994
No 302
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.89 E-value=35 Score=38.19 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.5
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|..-+|++.|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999866
No 303
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=26.87 E-value=40 Score=41.37 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHH-hhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 260 DEVYRE-TVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 260 eeVy~~-~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
..-|+. .+..+++++-+|.+-.+++- .||||||+|-+-
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 344554 46778899999999855554 799999999754
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.83 E-value=42 Score=40.18 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
--|+.||+.|+|||.+.
T Consensus 469 kGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ceEEEECCCCcchHHHH
Confidence 56999999999999875
No 305
>PRK01172 ski2-like helicase; Provisional
Probab=26.80 E-value=38 Score=40.77 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHhcCCCeEEEeeccCCCCCcccc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+.+|.| ++..++||||||...
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHHH
Confidence 3456776 577789999999863
No 306
>PRK08118 topology modulation protein; Reviewed
Probab=26.79 E-value=28 Score=34.21 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+-.|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 688899999999643
No 307
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=26.78 E-value=22 Score=34.14 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.1
Q ss_pred EeeccCCCCCcccc
Q 005092 283 FAYGQTGSGKTYTM 296 (715)
Q Consensus 283 fAYGqTGSGKTyTM 296 (715)
+-.|.+|||||+..
T Consensus 2 ~l~G~~GsGKSTla 15 (163)
T TIGR01313 2 VLMGVAGSGKSTIA 15 (163)
T ss_pred EEECCCCCCHHHHH
Confidence 55799999998653
No 308
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=26.77 E-value=56 Score=39.40 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=53.9
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCCC-------------hhhHHHHHHHH
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-------------LKASRDILRLM 311 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~-------------~~a~~~If~~i 311 (715)
+.|....=|.+.-.|...|... ++.+-+|.... +.+|.+|||||+++..+. ...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~-ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 3 KPFKLVSPYKPAGDQPQAIEEL----VEGIEAGEKHQ-TLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCcccccCCCCChHHHHHHHHH----HHhhhcCCCcE-EEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence 3466667788888998877763 44444554333 378999999999984311 11234455555
Q ss_pred hhhccCcceEEEEEEEEEeCceee
Q 005092 312 HHTYRSQGFQLFVSFFEIYGGKLF 335 (715)
Q Consensus 312 ~~~~~~~~~~V~vS~~EIYnE~v~ 335 (715)
..........+++|||.-|.-..|
T Consensus 78 ~~~~~~~~v~~f~s~~~~~~~~~~ 101 (652)
T PRK05298 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (652)
T ss_pred HHhcCCCeEEEeCChhhccCcccc
Confidence 444444457777888777765443
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.70 E-value=28 Score=39.46 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=16.3
Q ss_pred CeEEEeeccCCCCCcccccC
Q 005092 279 KATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~G 298 (715)
.-.+.-.|++|+|||+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577889999999999954
No 310
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=26.65 E-value=77 Score=33.89 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=54.3
Q ss_pred HHHhcCCCeE-EEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecc------cCCccce
Q 005092 272 PIIFQRTKAT-CFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDL------LSDRKKL 344 (715)
Q Consensus 272 ~~vl~G~N~t-vfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DL------L~~~~~l 344 (715)
..+++|.-+. |+-||..|+||+..+. .++..+... . ...+||-.+.+.+| |..+..-
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSLVK--------A~~~e~~~~----g----lrLVEV~k~dl~~Lp~l~~~Lr~~~~k 140 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSLVK--------ALLNEYADE----G----LRLVEVDKEDLATLPDLVELLRARPEK 140 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHHHH--------HHHHHHHhc----C----CeEEEEcHHHHhhHHHHHHHHhcCCce
Confidence 3567887665 8999999999998763 233332221 1 12678877765544 3322221
Q ss_pred eeEecCCCcEEEeccEEEE-eCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEE
Q 005092 345 CMREDGKQQVCIVGLQEYK-VSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQL 401 (715)
Q Consensus 345 ~i~ed~~~~v~v~gLte~~-V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I 401 (715)
.| +++.+|+--. =.+...+..+|+-|...|- ..--.-+.|.|-|.+=..
T Consensus 141 FI-------lFcDDLSFe~gd~~yK~LKs~LeG~ve~rP-~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 141 FI-------LFCDDLSFEEGDDAYKALKSALEGGVEGRP-ANVLFYATSNRRHLLPED 190 (287)
T ss_pred EE-------EEecCCCCCCCchHHHHHHHHhcCCcccCC-CeEEEEEecCCcccccHh
Confidence 11 1222333211 1233444455555555542 222234566777776433
No 311
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=26.59 E-value=70 Score=37.07 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=24.0
Q ss_pred hhhhhHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 266 TVEPIVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 266 ~~~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
+.-+=++.++.| ...+++-.|++|+|||...
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~ 280 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 280 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHH
Confidence 344557888887 4578899999999999754
No 312
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=26.58 E-value=44 Score=34.06 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=20.9
Q ss_pred hhHHHHhc-C--CCeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQ-R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~-G--~N~tvfAYGqTGSGKTyTM 296 (715)
+-++.++. | ...++.-+|++|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34566664 4 3567888999999999876
No 313
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.53 E-value=29 Score=29.14 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=12.8
Q ss_pred EEeeccCCCCCccccc
Q 005092 282 CFAYGQTGSGKTYTMK 297 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~ 297 (715)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567888999999873
No 314
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.53 E-value=30 Score=39.47 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=16.2
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...+...|++|+|||.|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567888999999999994
No 315
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.45 E-value=37 Score=40.87 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=15.2
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999985
No 316
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=26.43 E-value=24 Score=31.51 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.4
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999877
No 317
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.33 E-value=4.4e+02 Score=27.17 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hcCCCCC----------HHHHHHHHHHHHHHHHHHHHHHH
Q 005092 645 RKQVEDTMNIVKEEMNLLVE-ADQPGNQ----------LDDYVSRLNAILSQKAAGIMQLQ 694 (715)
Q Consensus 645 r~~~e~~~~~~k~Em~LL~~-~D~pgsd----------i~~yV~~L~~ILs~Ka~~I~~Lq 694 (715)
+.++|.+++.++++..-+.+ .-.++.+ |++=|..|+..|..|-+++.+|+
T Consensus 134 k~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777777776654431 1122222 45667777777777777776665
No 318
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=26.31 E-value=31 Score=31.98 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45667899999999987
No 319
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.15 E-value=35 Score=40.64 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=26.5
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcC-CCeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 296 (715)
+||.|.+ |+.|.+. |...+-.| ..-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666654 5555443 33333345 3445788999999999987
No 320
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.96 E-value=49 Score=36.51 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=26.1
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCccccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM~ 297 (715)
+||.|.+ |+.+. +.+.+.+-.|. .-.++-||+.|+|||++..
T Consensus 15 ~~~~iig----~~~~~----~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 15 TFDDVVG----QSHIT----NTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred cHHhcCC----cHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 5555543 44433 33444444563 4478889999999998773
No 321
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.93 E-value=4.4e+02 Score=30.07 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEM----NLL-VEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQ 701 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em----~LL-~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr 701 (715)
...+++|++|-.++-..|- .+++.++-||... .++ +..++--+-.+--..+|+..++--..+|..|+..|+...
T Consensus 211 ~~~l~~~~~el~eik~~~~-~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQS-RLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566666666655544443 3667777666633 222 222222222333333444444444445666665555444
Q ss_pred H
Q 005092 702 K 702 (715)
Q Consensus 702 ~ 702 (715)
.
T Consensus 290 E 290 (395)
T PF10267_consen 290 E 290 (395)
T ss_pred H
Confidence 3
No 322
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=25.93 E-value=46 Score=40.52 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.3
Q ss_pred hhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+|+.++ |.|+.|-+ +||+|||+.-
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 35777888 99975554 9999999874
No 323
>PHA02624 large T antigen; Provisional
Probab=25.85 E-value=51 Score=39.47 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHhcCCCe--EEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKA--TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~--tvfAYGqTGSGKTyTM 296 (715)
++.++.|... |++-||+.|||||+-.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 5667777544 9999999999999765
No 324
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=35 Score=36.85 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.6
Q ss_pred CCC--eEEEeeccCCCCCcccc
Q 005092 277 RTK--ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N--~tvfAYGqTGSGKTyTM 296 (715)
|.. -.|+.||+.|+|||..-
T Consensus 207 gidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHH
Confidence 544 45899999999999654
No 325
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=25.76 E-value=56 Score=39.45 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.1
Q ss_pred cCCCeEEEeeccCCCCCccccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+.|-||+.-|.+|||||.|+.
T Consensus 83 ~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cCCCceEEEecCCCCCchHHHH
Confidence 5899999999999999999983
No 326
>PTZ00110 helicase; Provisional
Probab=25.75 E-value=39 Score=39.75 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..++.|.+. ++..+||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 3456789876 56679999999763
No 327
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.74 E-value=4.8e+02 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 636 EEEDLVNAHRKQVEDTMNIVKEEMNLLV 663 (715)
Q Consensus 636 eee~~~~aHr~~~e~~~~~~k~Em~LL~ 663 (715)
..+++++.-.-.+.+-.+-++.|...|+
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444555566666555
No 328
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=25.67 E-value=55 Score=40.32 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.9
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 589999999999999999997
No 329
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.58 E-value=31 Score=31.98 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999864
No 330
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=25.55 E-value=29 Score=35.40 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999775
No 331
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=25.54 E-value=51 Score=35.81 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=22.6
Q ss_pred ChHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 258 SNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 258 sQeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
.|+.+.+. +...+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~----l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQT----LKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 35544443 333333553 456889999999999876
No 332
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.42 E-value=3.8e+02 Score=27.14 Aligned_cols=28 Identities=4% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 674 DYVSRLNAILSQKAAGIMQLQTQLAHFQ 701 (715)
Q Consensus 674 ~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr 701 (715)
.|+........+....+.+|+.+|...+
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555556666666665554
No 333
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=25.30 E-value=46 Score=34.87 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHHHhcC---CCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQR---TKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G---~N~tvfAYGqTGSGKTyT 295 (715)
++.++.| ....++-||..|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 5566665 567889999999999954
No 334
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.20 E-value=49 Score=38.34 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.9
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCC-eEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK-ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N-~tvfAYGqTGSGKTyTM 296 (715)
+||.|.+ |+.+ .+.|...+-.|.- ..++-||+.|+|||.+.
T Consensus 12 ~~~divG----q~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666665 4444 2233333334533 45789999999999987
No 335
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.16 E-value=39 Score=38.82 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=26.0
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
+||.|++. +.+ +..+...+-.|. .-.++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 57777763 333 333444444453 345667999999999887
No 336
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.15 E-value=5.3e+02 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 674 DYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 674 ~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
+++.+.+..|++--+.|.+|+......+..++++
T Consensus 48 ~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 48 EEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666555555555443
No 337
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.04 E-value=63 Score=36.57 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=18.8
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|..++.|.++- +.-+||||||-+.
T Consensus 91 aiP~~L~g~dvI--glAeTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDVI--GLAETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcEE--EEeccCCCchhhh
Confidence 345678898864 4459999999775
No 338
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=25.03 E-value=28 Score=31.50 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
-|.-+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999976
No 339
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.02 E-value=1.7e+02 Score=35.80 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 645 RKQVEDTMNIVKEEMNLLVEADQPGNQLDD---YVSRLNAILSQKAAGIMQLQTQLAH 699 (715)
Q Consensus 645 r~~~e~~~~~~k~Em~LL~~~D~pgsdi~~---yV~~L~~ILs~Ka~~I~~Lq~rL~q 699 (715)
+.+++.++++-++-..........+.|.++ -|.+|..+|+.|.+.|..||.-|..
T Consensus 558 ~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKA 615 (717)
T PF09730_consen 558 QRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQIATLRTVLKA 615 (717)
T ss_pred HHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666655544445555666655 8899999999999999999976643
No 340
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=24.88 E-value=51 Score=39.50 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 254 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 254 ~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.....|+.+...+... .-......++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 3445576665554433 22334445789999999999865
No 341
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.77 E-value=84 Score=39.37 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.6
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
..+..+-+|+||||||..+
T Consensus 24 ~~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3445566899999999876
No 342
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=24.75 E-value=49 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=22.5
Q ss_pred hhhhHHHHhcCC---CeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
..+-++.++.|. ...+.-||.+|||||..+
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 334566777763 566789999999999876
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=24.66 E-value=72 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.9
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567888999999999983
No 344
>CHL00195 ycf46 Ycf46; Provisional
Probab=24.45 E-value=31 Score=40.13 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
.-.|+-||+.|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999876
No 345
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.44 E-value=40 Score=37.95 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=24.5
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCC-eEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK-ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N-~tvfAYGqTGSGKTyTM 296 (715)
.||.|++ |+.+-+ .|...+-+|.- -+++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~~~----~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHITR----TIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHHH----HHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5666665 443322 23333334433 34777999999999876
No 346
>PRK13767 ATP-dependent helicase; Provisional
Probab=24.39 E-value=43 Score=41.83 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=16.6
Q ss_pred HHhcCCCeEEEeeccCCCCCcccc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+++|.|+.| ..+||||||...
T Consensus 43 ~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 43 LIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHcCCCEEE--ECCCCCcHHHHH
Confidence 4568888654 569999999863
No 347
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.30 E-value=33 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999765
No 348
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=24.24 E-value=42 Score=33.97 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+.+|..|||||+.-
T Consensus 2 I~i~G~pGsGKsT~a 16 (210)
T TIGR01351 2 LVLLGPPGSGKGTQA 16 (210)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998753
No 349
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.18 E-value=30 Score=34.52 Aligned_cols=15 Identities=40% Similarity=0.364 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999988
No 350
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=24.14 E-value=38 Score=40.47 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=19.2
Q ss_pred hHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
|...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333344554 336888999999999986
No 351
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=24.06 E-value=34 Score=32.45 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.1
Q ss_pred eEEEeeccCCCCCcccccCC
Q 005092 280 ATCFAYGQTGSGKTYTMKPL 299 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~Gl 299 (715)
.+|+-+|.-|+|||+-..|+
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l 35 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGL 35 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999988653
No 352
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=24.06 E-value=34 Score=41.71 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=29.3
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCC
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL 299 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl 299 (715)
.+|.|++ +++... .+++-+..+....++-||++|+|||....++
T Consensus 180 ~l~~~ig----r~~ei~----~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 180 KIDPLIG----REDELE----RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCCcccC----cHHHHH----HHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 4455554 444333 4555455556667889999999999998654
No 353
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=23.96 E-value=26 Score=40.15 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=18.6
Q ss_pred cCCCeEEEeeccCCCCCcccccCCChh
Q 005092 276 QRTKATCFAYGQTGSGKTYTMKPLPLK 302 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~Gl~~~ 302 (715)
.++|. +-.|++|+||||...++.+.
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHH
Confidence 56664 66799999999988654443
No 354
>PRK08233 hypothetical protein; Provisional
Probab=23.96 E-value=33 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=12.7
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999876
No 355
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=23.87 E-value=61 Score=37.06 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.2
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
-++.|-+|....-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 357788999999999999999999987
No 356
>CHL00176 ftsH cell division protein; Validated
Probab=23.81 E-value=47 Score=39.99 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999999873
No 357
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=23.79 E-value=23 Score=36.49 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.9
Q ss_pred eccCCCCCcccc
Q 005092 285 YGQTGSGKTYTM 296 (715)
Q Consensus 285 YGqTGSGKTyTM 296 (715)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999988
No 358
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.68 E-value=59 Score=40.58 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57788899999999987
No 359
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=23.64 E-value=52 Score=34.78 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.4
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
-....|+..|.||+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 45678899999999999987
No 360
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=23.55 E-value=27 Score=39.28 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=0.0
Q ss_pred EEeeccCCCCCcccccC
Q 005092 282 CFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~G 298 (715)
+++||..|||||+++..
T Consensus 5 ~v~~GGrGS~KS~~~a~ 21 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQ 21 (387)
T ss_dssp -----------------
T ss_pred EEEECCCCchHHHHHHH
Confidence 57899999999999854
No 361
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=23.53 E-value=27 Score=39.15 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
.-++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346888999999998774
No 362
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=23.53 E-value=66 Score=39.59 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.5
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
.++++-+|+||+|||++..
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTV 506 (758)
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 3679999999999999873
No 363
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=23.40 E-value=31 Score=34.50 Aligned_cols=15 Identities=40% Similarity=0.353 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999875
No 364
>PRK06217 hypothetical protein; Validated
Probab=23.26 E-value=35 Score=33.77 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999999764
No 365
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.15 E-value=3.9e+02 Score=25.68 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 637 EEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLA 698 (715)
Q Consensus 637 ee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~ 698 (715)
.+.-+....+.++..+...|+|+.-+. ..+....++...=+-+|..+|..|+++|.
T Consensus 95 ~~~~l~~~~~~~~~~~k~~kee~~klk------~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 95 KERQLQKQLKSLEAKLKQEKEELQKLK------NQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444445666666666665444 35567777778888888888888888875
No 366
>PRK00300 gmk guanylate kinase; Provisional
Probab=22.97 E-value=36 Score=33.92 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.5
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346778899999999765
No 367
>PRK09039 hypothetical protein; Validated
Probab=22.94 E-value=4.8e+02 Score=28.98 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 005092 635 QEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQL-AHFQKRL 704 (715)
Q Consensus 635 eeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL-~qfr~~L 704 (715)
..|-+-+...+..|+..++..++.-.-.+ ..|+++-.+|+..|.+|...+..++.++ .+++.-|
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~------~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~ 207 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQ------AKIADLGRRLNVALAQRVQELNRYRSEFFGRLREIL 207 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33333344445556666665555443222 4578888888888888888888888776 3444333
No 368
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=4.2e+02 Score=32.77 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 640 LVNAHRKQVEDTMNIVKEEMNLL-VEADQPGNQ---LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 640 ~~~aHr~~~e~~~~~~k~Em~LL-~~~D~pgsd---i~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
..++|.++++..++.|......| ..+.+...+ ....|..+..-.+..+.+|.+||+||..++..|..
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888888888777665443 233333333 35667777777888888999999999998887763
No 369
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=22.81 E-value=36 Score=33.09 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999865
No 370
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=22.80 E-value=1.1e+02 Score=34.72 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.9
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
..+++|+.||+|||+.
T Consensus 26 ~~i~~G~rGS~KSy~~ 41 (414)
T COG1783 26 YFIAKGGRGSSKSYAT 41 (414)
T ss_pred EEEEEccCCCchhHHH
Confidence 5899999999999997
No 371
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=22.80 E-value=41 Score=33.79 Aligned_cols=31 Identities=35% Similarity=0.366 Sum_probs=23.8
Q ss_pred EeeccCCCCCcccc------cCCChhhHHHHHHHHhh
Q 005092 283 FAYGQTGSGKTYTM------KPLPLKASRDILRLMHH 313 (715)
Q Consensus 283 fAYGqTGSGKTyTM------~Gl~~~a~~~If~~i~~ 313 (715)
---|+.|||||..- .|+..-....+|+.+..
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~ 40 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMAR 40 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHH
Confidence 34589999999764 57777777888887764
No 372
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=22.73 E-value=34 Score=41.68 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.1
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
|.-.+..|.||||||++|.
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 7778999999999999984
No 373
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=22.72 E-value=48 Score=40.66 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
|..++.+ +..++-.|..|+||||+|..
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 4455555 34677889999999999854
No 374
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=22.68 E-value=37 Score=37.96 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.0
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
---|.-||..|.|||+.|
T Consensus 62 ~~GlYl~G~vG~GKT~Lm 79 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM 79 (362)
T ss_pred CceEEEECCCCCchhHHH
Confidence 345899999999999999
No 375
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=55 Score=35.28 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
-.++.||+.|+|||..-
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 35899999999999653
No 376
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.50 E-value=47 Score=41.98 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 005092 648 VEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAA--------GIMQLQTQLAHFQKRL 704 (715)
Q Consensus 648 ~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~--------~I~~Lq~rL~qfr~~L 704 (715)
....++.+..|-.+.. .|.-.-|-||.++..+=.+-.. +-...+++|...-..|
T Consensus 880 ~~~~~~~~~~e~~~~~---~p~~ra~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (988)
T PRK13889 880 PARAIRALQLETELRT---DPARRADRFVERWQKLDRASQRQYQAGDMSGYKATRAAMGDMAKSL 941 (988)
T ss_pred HHHHHHHHHHHHHHhc---ChhhhhHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 3456677777777777 7777789999988876555442 4555666655554444
No 377
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=22.44 E-value=58 Score=39.24 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=22.0
Q ss_pred hHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 259 NDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 259 QeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|.++++.+...+ -+ +..+++-.+||||||+..
T Consensus 2 Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHH
Confidence 677776644333 23 356888999999999654
No 378
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=22.33 E-value=55 Score=37.35 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
.-++.+|.||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 66899999999999987
No 379
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=22.28 E-value=63 Score=34.79 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=22.5
Q ss_pred CCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 256 ~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
...|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 4456554444 3344446754 566679999999887
No 380
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=22.28 E-value=63 Score=34.79 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=22.5
Q ss_pred CCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 256 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 256 ~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
...|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 4456554444 3344446754 566679999999887
No 381
>PRK04040 adenylate kinase; Provisional
Probab=22.15 E-value=39 Score=34.04 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5788999999999876
No 382
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.14 E-value=6e+02 Score=29.14 Aligned_cols=62 Identities=10% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 646 KQVEDTMNIVKEEMNLLVEADQ---PGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 646 ~~~e~~~~~~k~Em~LL~~~D~---pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
+.+++.++-++..+..|..... .......-..++..-+.+..+.+..|++++..++..|+.-
T Consensus 344 ~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 344 EELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555544443222 2233445555666666666678888888888888877754
No 383
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=22.13 E-value=32 Score=42.51 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
+-.+..|+||||||++|.
T Consensus 442 gn~~I~G~tGsGKS~l~~ 459 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLLA 459 (811)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 356679999999999984
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.08 E-value=72 Score=36.62 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=16.3
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...|+-.|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999983
No 385
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=22.07 E-value=39 Score=38.50 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.8
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999876
No 386
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=21.97 E-value=37 Score=36.65 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=20.0
Q ss_pred hHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
++-.++.| ....+|.||..|+|||..+
T Consensus 64 ~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 64 VIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 33344444 4477999999999999887
No 387
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.89 E-value=39 Score=31.74 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=17.2
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367788899999999999876
No 388
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=21.88 E-value=40 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.+.-.|+.|||||.+|.
T Consensus 27 i~~ivGpNGaGKSTll~ 43 (212)
T cd03274 27 FSAIVGPNGSGKSNVID 43 (212)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34467999999999983
No 389
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=21.79 E-value=55 Score=41.18 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=20.5
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.++..+.-.+...-++..|+||||||-+.
T Consensus 460 I~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 460 IEEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 344444444455556789999999999765
No 390
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=21.78 E-value=39 Score=38.49 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.9
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...|+-+|+||+|||+..
T Consensus 116 ~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CceEEEECCCCcCHHHHH
Confidence 357999999999999877
No 391
>PRK14532 adenylate kinase; Provisional
Probab=21.72 E-value=44 Score=32.90 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=21.63 E-value=1.1e+02 Score=33.56 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEE-eCceeecccCCccceeeEec
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEI-YGGKLFDLLSDRKKLCMRED 349 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EI-YnE~v~DLL~~~~~l~i~ed 349 (715)
+...|.|. .+|| -||+|-|||..+--+.+......-..-+...++.+-+-.+.++.+ -++.|.|=
T Consensus 158 l~~~l~~~-~svl-~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDT------------ 223 (301)
T COG1162 158 LAELLAGK-ITVL-LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDT------------ 223 (301)
T ss_pred HHHHhcCC-eEEE-ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeC------------
Confidence 44567777 4455 499999999988544442222222222222345556666767777 45655553
Q ss_pred CCCcEEEeccEEEEe--CCHHHHHHHHHhh
Q 005092 350 GKQQVCIVGLQEYKV--SDVETIKELIEKG 377 (715)
Q Consensus 350 ~~~~v~v~gLte~~V--~s~ee~~~ll~~g 377 (715)
.|..++.+ -+.+++...+..-
T Consensus 224 -------PGf~~~~l~~~~~e~l~~~F~ef 246 (301)
T COG1162 224 -------PGFRSLGLAHLEPEDLVQAFPEF 246 (301)
T ss_pred -------CCCCccCcccCCHHHHHHHhHHH
Confidence 35556655 5667776666544
No 393
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.52 E-value=67 Score=36.61 Aligned_cols=54 Identities=30% Similarity=0.424 Sum_probs=33.5
Q ss_pred ccccceeEEeeeecCCCCChHHHHHHhhh-------hhH----HHHhcCCCeEEEeeccCCCCCc--ccccC
Q 005092 240 EYVEKHEFVFDAVLNEEVSNDEVYRETVE-------PIV----PIIFQRTKATCFAYGQTGSGKT--YTMKP 298 (715)
Q Consensus 240 ~~~~~~~F~FD~VF~~~asQeeVy~~~~~-------plV----~~vl~G~N~tvfAYGqTGSGKT--yTM~G 298 (715)
.+..+-..+||.+|... .+|.+.+-+ |+- .-+|+|.+++..| |||+||| |.|.|
T Consensus 212 rpIPnP~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA--QTgtgKtL~~L~pg 278 (629)
T KOG0336|consen 212 RPIPNPVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA--QTGTGKTLAFLLPG 278 (629)
T ss_pred ccCCCCcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEEEE--ecCCCcCHHHhccc
Confidence 34455678999999753 344443322 111 1357899876554 9999999 45555
No 394
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.48 E-value=45 Score=36.43 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|+||||||-.-
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 6888999999999743
No 395
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.46 E-value=72 Score=38.98 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
++++-+|+||+|||++..
T Consensus 485 ~~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAK 502 (731)
T ss_pred eeEEEECCCCccHHHHHH
Confidence 568889999999998773
No 396
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=21.40 E-value=66 Score=34.92 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred hhhHHHHhcCC---CeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
-+-++.++.|. ...+.-||.+|||||...
T Consensus 88 ~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 88 SKELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred CHHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 34456677653 567788999999999876
No 397
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=21.39 E-value=35 Score=42.00 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.0
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
.+-.+.+|+||||||.++.
T Consensus 426 ~g~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMT 444 (789)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4567889999999999983
No 398
>PRK02496 adk adenylate kinase; Provisional
Probab=21.39 E-value=51 Score=32.37 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEeeccCCCCCcccc------cCCChhhHHHHHH
Q 005092 282 CFAYGQTGSGKTYTM------KPLPLKASRDILR 309 (715)
Q Consensus 282 vfAYGqTGSGKTyTM------~Gl~~~a~~~If~ 309 (715)
|+-.|+.|||||... .|+......++++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~ 37 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILR 37 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHH
Confidence 667899999999865 3544444445443
No 399
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.38 E-value=5.1e+02 Score=33.11 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 636 EEEDLVNAHRKQVEDTMNIVKEEMNLLVEA---DQPG----NQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 636 eee~~~~aHr~~~e~~~~~~k~Em~LL~~~---D~pg----sdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
.....+..|+.+++..+..++.||.-|++. .+.+ .+....+....+-++.+.+....|+..+.+.+...++.+
T Consensus 696 ~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~ 775 (1074)
T KOG0250|consen 696 KKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELE 775 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455678888888888889999888863 1211 112344566666677777777777777777776666544
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=21.26 E-value=37 Score=35.61 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|.-.|++|||||..|
T Consensus 33 ~vaI~GpSGSGKSTLL 48 (226)
T COG1136 33 FVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999887
No 401
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=21.22 E-value=49 Score=38.68 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=31.9
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 244 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 244 ~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
...+.||.+++....-..+.+.+ .. +...+..|+-+|.+||||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 35689999988654334343331 11 2346778999999999999865
No 402
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=21.20 E-value=54 Score=40.17 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.|..+ --+||||||...
T Consensus 45 i~~il~G~nvvv--~apTGSGKTla~ 68 (742)
T TIGR03817 45 AELAHAGRHVVV--ATGTASGKSLAY 68 (742)
T ss_pred HHHHHCCCCEEE--ECCCCCcHHHHH
Confidence 345678999655 458999999864
No 403
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=21.07 E-value=43 Score=34.00 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCCcccccC
Q 005092 279 KATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~G 298 (715)
+..+.-.|++|||||..|..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDA 47 (213)
T ss_pred cCEEEEECCCCCCHHHHHHH
Confidence 34566789999999999853
No 404
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=21.07 E-value=40 Score=33.42 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 405
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=21.01 E-value=34 Score=30.72 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 466899999999876
No 406
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=21.01 E-value=46 Score=39.75 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=25.5
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcC-CCeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 296 (715)
.||.|.+ |+.+- +.+...+-.| ..-+++-||+.|+|||.++
T Consensus 14 ~F~dIIG----Qe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 14 NFKQIIG----QELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 4566654 33333 3333333344 3346889999999999887
No 407
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.91 E-value=47 Score=40.86 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.++-||++|+|||++.
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5777999999999876
No 408
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=20.88 E-value=33 Score=35.05 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=21.9
Q ss_pred CeEEEeeccCCCCCcccccCCChhhHH
Q 005092 279 KATCFAYGQTGSGKTYTMKPLPLKASR 305 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~Gl~~~a~~ 305 (715)
.+.|..||.+|.|||+...|+..+++.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g 48 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG 48 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 468999999999999998886555543
No 409
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=20.80 E-value=40 Score=35.28 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=12.2
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-+|+||||||..-
T Consensus 3 v~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEEE-STTSSHHHHH
T ss_pred EEEEECCCCCChhHHH
Confidence 3567899999999865
No 410
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=20.80 E-value=39 Score=37.52 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
+.-.|++|||||.++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999998
No 411
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=20.77 E-value=44 Score=40.02 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=15.5
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
.+-++..|..|||||.||
T Consensus 14 ~~~~~V~Ag~GSGKT~~L 31 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVI 31 (664)
T ss_pred CCCEEEEecCCCCHHHHH
Confidence 445788899999999998
No 412
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.61 E-value=43 Score=34.01 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.1
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
+++-+|++|+|||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 77889999999999873
No 413
>PRK06851 hypothetical protein; Provisional
Probab=20.47 E-value=1.2e+02 Score=34.13 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=22.8
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+.+.++.+.+-.++--|..|+|||++|.
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3445667788889999999999999983
No 414
>PRK13531 regulatory ATPase RavA; Provisional
Probab=20.47 E-value=61 Score=37.85 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=21.0
Q ss_pred hhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 266 TVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 266 ~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++-++..++.|.+ |+-+|++|+|||+..
T Consensus 28 vI~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 28 AIRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 34455556665554 688999999999876
No 415
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=20.44 E-value=53 Score=39.19 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
|..++. +..++-.|..|||||||+.
T Consensus 154 ~~~al~--~~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 154 VALALK--SNFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHhh--CCeEEEEcCCCCCHHHHHH
Confidence 344444 3456678999999999973
No 416
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.31 E-value=4.9e+02 Score=30.37 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC----C--------CCCHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 005092 642 NAHRKQVEDTMNIVKEEMNLLVEADQ----P--------GNQLD-------DYVSRLNAILSQKAA---GIMQLQTQLAH 699 (715)
Q Consensus 642 ~aHr~~~e~~~~~~k~Em~LL~~~D~----p--------gsdi~-------~yV~~L~~ILs~Ka~---~I~~Lq~rL~q 699 (715)
...+..+++..+.++.+.++|...-. + ..++. .|-.++..+..++.+ .+..|+.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 84 EAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSE 163 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777754331 1 11333 333344444433332 66667777777
Q ss_pred HHHHHH
Q 005092 700 FQKRLK 705 (715)
Q Consensus 700 fr~~L~ 705 (715)
++.+|.
T Consensus 164 l~~~l~ 169 (525)
T TIGR02231 164 LQNELN 169 (525)
T ss_pred HHHHHH
Confidence 766664
No 417
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=20.30 E-value=48 Score=32.83 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=47.5
Q ss_pred cCCCeEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCceee-cccCCc----------cc
Q 005092 276 QRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLF-DLLSDR----------KK 343 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~-~~~~~V~vS~~EIYnE~v~-DLL~~~----------~~ 343 (715)
..++..|+-+|.+||||+... +.|+.... ...--|.|.+-.+..+.+- .|+... +.
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA------------~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~ 86 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA------------RAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKK 86 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH------------HHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBE
T ss_pred hCCCCCEEEEcCCCCcHHHHH------------HHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccC
Confidence 378899999999999998654 23333211 1122222222222212111 122111 11
Q ss_pred eeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhcc
Q 005092 344 LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSR 381 (715)
Q Consensus 344 l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R 381 (715)
-.+..-..+-+++.++.......-..++++|+.+.-.|
T Consensus 87 G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 87 GLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred CceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 12222344557788888777777777888887764433
No 418
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.25 E-value=1.2e+02 Score=33.01 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=22.6
Q ss_pred EEEeeccCCCCCccccc-----C------CChhhHHHHHHHHh
Q 005092 281 TCFAYGQTGSGKTYTMK-----P------LPLKASRDILRLMH 312 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~-----G------l~~~a~~~If~~i~ 312 (715)
.|+.-|.+|||||..|. | +|+..+..+...+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 47788999999999982 3 55555555555544
No 419
>PTZ00014 myosin-A; Provisional
Probab=20.23 E-value=89 Score=38.84 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+.|-||+.-|.+|+|||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999886
No 420
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.21 E-value=53 Score=39.76 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.2
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
+||.|++ |+.+ ++.|...+-.|. .-.++-||+.|+|||.+.
T Consensus 13 tFddVIG----Qe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVG----QNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5677766 4444 333333333453 457788999999999876
No 421
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.18 E-value=7.4e+02 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 634 LQEEEDLVNAHRKQVEDTMNIVKEEMNLL 662 (715)
Q Consensus 634 leeee~~~~aHr~~~e~~~~~~k~Em~LL 662 (715)
|+.|-..+...+..++..+..++.|..-|
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777788888888888888877533
No 422
>PRK06762 hypothetical protein; Provisional
Probab=20.17 E-value=48 Score=31.92 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=12.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|.-.|..|||||+.-
T Consensus 4 li~i~G~~GsGKST~A 19 (166)
T PRK06762 4 LIIIRGNSGSGKTTIA 19 (166)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998754
No 423
>PRK10689 transcription-repair coupling factor; Provisional
Probab=20.07 E-value=70 Score=41.24 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=24.7
Q ss_pred cCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 253 LNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 253 F~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|.+...|.+++..+...+ -.+...-++++|+||||||-+.
T Consensus 599 ~~~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred CCCCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHHH
Confidence 345556665555443332 2334445899999999999653
No 424
>PRK04296 thymidine kinase; Provisional
Probab=20.04 E-value=30 Score=34.71 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCcccccC
Q 005092 281 TCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~G 298 (715)
.++-+|+.|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 467799999999976644
Done!