Query 005092
Match_columns 715
No_of_seqs 420 out of 1871
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2heh_A KIF2C protein; kinesin, 100.0 9.7E-86 3.3E-90 718.9 28.7 323 193-523 48-385 (387)
2 1v8k_A Kinesin-like protein KI 100.0 2.6E-85 8.8E-90 719.7 29.2 324 194-525 69-407 (410)
3 2vvg_A Kinesin-2; motor protei 100.0 4.2E-85 1.4E-89 707.3 29.1 335 195-531 3-346 (350)
4 3lre_A Kinesin-like protein KI 100.0 1.3E-84 4.5E-89 705.4 29.0 326 194-520 8-355 (355)
5 1ry6_A Internal kinesin; kines 100.0 2.1E-84 7.3E-89 704.2 27.3 326 197-528 1-339 (360)
6 3b6u_A Kinesin-like protein KI 100.0 7.5E-84 2.6E-88 701.8 24.8 332 194-531 19-364 (372)
7 1x88_A Kinesin-like protein KI 100.0 1.1E-83 3.7E-88 699.1 22.6 328 194-528 6-358 (359)
8 1goj_A Kinesin, kinesin heavy 100.0 4.6E-83 1.6E-87 692.9 26.8 327 194-533 4-343 (355)
9 2zfi_A Kinesin-like protein KI 100.0 7E-83 2.4E-87 694.3 26.6 327 195-527 3-361 (366)
10 3bfn_A Kinesin-like protein KI 100.0 5.2E-83 1.8E-87 697.6 24.2 333 193-534 18-361 (388)
11 2wbe_C Bipolar kinesin KRP-130 100.0 6.4E-83 2.2E-87 695.9 24.8 330 193-530 20-371 (373)
12 1bg2_A Kinesin; motor protein, 100.0 5.9E-83 2E-87 684.9 22.8 310 194-520 5-325 (325)
13 3cob_A Kinesin heavy chain-lik 100.0 7E-82 2.4E-86 686.1 31.2 325 194-530 3-337 (369)
14 2y65_A Kinesin, kinesin heavy 100.0 1.3E-82 4.3E-87 691.5 24.5 324 194-534 9-347 (365)
15 2owm_A Nckin3-434, related to 100.0 6.1E-82 2.1E-86 701.1 29.8 336 193-531 35-425 (443)
16 1t5c_A CENP-E protein, centrom 100.0 4.9E-82 1.7E-86 683.5 25.4 323 194-531 2-339 (349)
17 3gbj_A KIF13B protein; kinesin 100.0 1.1E-81 3.8E-86 682.2 26.5 324 196-520 1-350 (354)
18 2h58_A Kinesin-like protein KI 100.0 5.2E-81 1.8E-85 671.2 28.6 314 194-521 2-329 (330)
19 4a14_A Kinesin, kinesin-like p 100.0 3.8E-81 1.3E-85 676.2 26.9 311 194-518 9-344 (344)
20 2rep_A Kinesin-like protein KI 100.0 5.7E-81 1.9E-85 680.5 25.5 323 194-520 20-376 (376)
21 3t0q_A AGR253WP; kinesin, alph 100.0 7.3E-80 2.5E-84 667.1 29.7 319 195-524 4-348 (349)
22 1f9v_A Kinesin-like protein KA 100.0 5.6E-80 1.9E-84 667.2 27.6 317 195-524 2-345 (347)
23 3u06_A Protein claret segregat 100.0 3.8E-79 1.3E-83 673.1 26.1 324 194-528 57-390 (412)
24 3nwn_A Kinesin-like protein KI 100.0 1.9E-79 6.6E-84 665.1 20.7 318 193-520 21-359 (359)
25 4etp_A Kinesin-like protein KA 100.0 2.3E-78 7.7E-83 666.4 25.7 319 194-524 57-401 (403)
26 2nr8_A Kinesin-like protein KI 100.0 1.6E-78 5.3E-83 657.8 22.7 318 193-520 20-358 (358)
27 3dc4_A Kinesin-like protein NO 100.0 4.3E-78 1.5E-82 651.2 25.1 304 191-523 17-338 (344)
28 4h1g_A Maltose binding protein 100.0 1.9E-72 6.7E-77 661.1 28.3 319 193-521 371-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 9E-28 3.1E-32 214.8 0.6 87 447-533 2-89 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 3.4E-25 1.2E-29 204.0 3.0 82 450-531 1-83 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 8.8E-24 3E-28 218.6 8.4 262 195-524 23-293 (298)
32 3ec2_A DNA replication protein 92.7 0.022 7.4E-07 54.3 0.2 51 246-297 6-56 (180)
33 2w58_A DNAI, primosome compone 90.2 0.077 2.6E-06 51.2 1.1 51 246-297 21-72 (202)
34 2qgz_A Helicase loader, putati 88.7 0.12 4E-06 54.3 1.2 50 247-297 121-170 (308)
35 4etp_B Spindle POLE BODY-assoc 85.6 5.4 0.00018 42.1 11.5 254 194-519 57-323 (333)
36 1jbk_A CLPB protein; beta barr 84.0 0.46 1.6E-05 43.9 2.4 31 267-297 31-61 (195)
37 3t15_A Ribulose bisphosphate c 83.6 0.42 1.4E-05 49.5 2.2 48 249-296 2-53 (293)
38 2p65_A Hypothetical protein PF 81.5 0.5 1.7E-05 43.7 1.6 31 267-297 31-61 (187)
39 2bjv_A PSP operon transcriptio 80.2 0.53 1.8E-05 47.3 1.4 45 246-296 2-46 (265)
40 3te6_A Regulatory protein SIR3 77.8 0.76 2.6E-05 48.7 1.8 25 272-296 38-62 (318)
41 2r62_A Cell division protease 77.4 0.64 2.2E-05 46.7 1.0 51 246-297 7-62 (268)
42 3h4m_A Proteasome-activating n 76.6 0.71 2.4E-05 46.7 1.1 52 245-296 12-68 (285)
43 2kjq_A DNAA-related protein; s 75.1 1.3 4.3E-05 41.3 2.3 42 246-297 13-54 (149)
44 1l8q_A Chromosomal replication 74.9 1 3.5E-05 46.7 1.7 49 246-297 7-55 (324)
45 1ixz_A ATP-dependent metallopr 74.7 0.85 2.9E-05 45.5 1.1 52 245-297 11-67 (254)
46 3cf0_A Transitional endoplasmi 74.5 0.9 3.1E-05 47.0 1.2 51 246-296 11-66 (301)
47 1g8p_A Magnesium-chelatase 38 73.7 0.71 2.4E-05 48.0 0.2 44 245-296 19-62 (350)
48 2v1u_A Cell division control p 73.4 0.85 2.9E-05 47.7 0.7 40 257-297 22-62 (387)
49 2chg_A Replication factor C sm 72.6 1.4 4.9E-05 41.6 2.0 21 276-296 35-55 (226)
50 1vec_A ATP-dependent RNA helic 72.2 1.6 5.6E-05 41.6 2.3 24 271-296 34-57 (206)
51 1qde_A EIF4A, translation init 72.0 1.4 4.9E-05 42.6 1.9 23 271-295 45-67 (224)
52 4b4t_M 26S protease regulatory 71.4 3 0.0001 46.1 4.5 52 245-296 176-232 (434)
53 2gxq_A Heat resistant RNA depe 71.4 1.6 5.3E-05 41.7 2.0 23 272-296 33-55 (207)
54 3bos_A Putative DNA replicatio 71.4 1.7 6E-05 41.9 2.4 46 247-297 25-70 (242)
55 1d2n_A N-ethylmaleimide-sensit 70.5 1.9 6.5E-05 43.5 2.5 27 270-296 52-81 (272)
56 3d8b_A Fidgetin-like protein 1 70.4 0.97 3.3E-05 48.0 0.3 50 247-296 81-134 (357)
57 3uk6_A RUVB-like 2; hexameric 70.1 2 6.7E-05 45.1 2.6 46 246-296 40-87 (368)
58 3b9p_A CG5977-PA, isoform A; A 69.9 1.2 4E-05 45.4 0.8 51 246-296 17-71 (297)
59 4b4t_K 26S protease regulatory 69.6 2.5 8.7E-05 46.5 3.4 52 245-296 167-223 (428)
60 3dkp_A Probable ATP-dependent 67.8 2 6.9E-05 42.3 2.0 24 271-296 60-83 (245)
61 1iy2_A ATP-dependent metallopr 67.0 1.7 5.8E-05 44.1 1.3 17 281-297 75-91 (278)
62 2z4s_A Chromosomal replication 66.7 1.9 6.5E-05 47.3 1.7 48 245-297 100-148 (440)
63 1p9r_A General secretion pathw 66.7 2.2 7.5E-05 46.8 2.1 28 270-297 158-185 (418)
64 1fnn_A CDC6P, cell division co 66.3 2.6 9E-05 44.0 2.6 45 247-296 14-61 (389)
65 3syl_A Protein CBBX; photosynt 66.1 1.7 5.7E-05 44.4 1.0 20 277-296 65-84 (309)
66 3bor_A Human initiation factor 66.1 1.4 4.8E-05 43.5 0.4 24 271-296 61-84 (237)
67 2qz4_A Paraplegin; AAA+, SPG7, 65.7 3.9 0.00014 40.3 3.7 20 278-297 38-57 (262)
68 1xwi_A SKD1 protein; VPS4B, AA 65.6 1.6 5.5E-05 45.7 0.8 50 247-296 9-62 (322)
69 2c9o_A RUVB-like 1; hexameric 65.3 2.9 0.0001 45.9 2.8 46 246-296 33-80 (456)
70 2pl3_A Probable ATP-dependent 65.2 2.5 8.4E-05 41.4 2.0 24 271-296 56-79 (236)
71 2qby_A CDC6 homolog 1, cell di 64.7 2 6.7E-05 44.7 1.2 20 277-296 43-62 (386)
72 1t6n_A Probable ATP-dependent 63.5 2.8 9.5E-05 40.5 2.0 24 271-296 45-68 (220)
73 3jvv_A Twitching mobility prot 63.2 2.6 8.8E-05 45.2 1.8 27 271-297 115-141 (356)
74 3ly5_A ATP-dependent RNA helic 62.9 2.1 7.1E-05 43.2 1.0 23 272-296 86-108 (262)
75 3b6e_A Interferon-induced heli 62.3 1.4 4.9E-05 41.9 -0.3 21 274-296 45-65 (216)
76 3iuy_A Probable ATP-dependent 61.9 3 0.0001 40.6 1.9 23 272-296 52-74 (228)
77 2x8a_A Nuclear valosin-contain 61.7 1.1 3.8E-05 46.0 -1.4 50 247-296 7-61 (274)
78 1wrb_A DJVLGB; RNA helicase, D 61.3 3.1 0.00011 41.2 1.9 23 272-296 55-77 (253)
79 2qby_B CDC6 homolog 3, cell di 60.7 2.9 9.8E-05 43.8 1.6 37 259-296 25-62 (384)
80 3lay_A Zinc resistance-associa 60.6 53 0.0018 31.7 10.4 67 627-707 73-143 (175)
81 3llm_A ATP-dependent RNA helic 60.4 2.9 0.0001 41.3 1.5 25 270-296 69-93 (235)
82 3nmd_A CGMP dependent protein 60.2 23 0.00079 29.4 6.5 30 673-702 39-68 (72)
83 3eie_A Vacuolar protein sortin 60.2 2.2 7.6E-05 44.4 0.6 51 246-296 14-68 (322)
84 3eiq_A Eukaryotic initiation f 60.1 3.8 0.00013 43.2 2.4 24 271-296 71-94 (414)
85 4b4t_L 26S protease subunit RP 60.0 4.1 0.00014 45.0 2.8 52 245-296 176-232 (437)
86 3fmo_B ATP-dependent RNA helic 59.8 3.1 0.00011 43.0 1.6 26 271-296 123-148 (300)
87 2oxc_A Probable ATP-dependent 59.1 3.6 0.00012 40.2 1.9 23 272-296 56-78 (230)
88 2eyu_A Twitching motility prot 58.9 3.8 0.00013 41.8 2.1 21 277-297 23-43 (261)
89 3vfd_A Spastin; ATPase, microt 58.8 2.1 7.3E-05 45.8 0.2 52 245-296 110-165 (389)
90 3fe2_A Probable ATP-dependent 58.7 3.3 0.00011 40.8 1.6 23 272-296 61-83 (242)
91 3ber_A Probable ATP-dependent 58.6 3.8 0.00013 41.0 2.0 23 272-296 75-97 (249)
92 3opc_A Uncharacterized protein 57.7 57 0.0019 30.1 9.9 54 628-696 7-60 (154)
93 3pvs_A Replication-associated 57.3 4.1 0.00014 45.0 2.1 39 257-296 29-67 (447)
94 1lv7_A FTSH; alpha/beta domain 57.3 5.8 0.0002 39.4 3.1 19 279-297 45-63 (257)
95 3pfi_A Holliday junction ATP-d 56.9 5 0.00017 41.5 2.7 44 248-296 27-72 (338)
96 1njg_A DNA polymerase III subu 56.9 4.6 0.00016 38.3 2.2 17 280-296 46-62 (250)
97 2qp9_X Vacuolar protein sortin 56.8 2.8 9.4E-05 44.6 0.7 50 247-296 48-101 (355)
98 1sxj_C Activator 1 40 kDa subu 55.6 4.4 0.00015 42.2 2.0 42 248-297 23-64 (340)
99 3co5_A Putative two-component 55.4 4.1 0.00014 37.0 1.5 21 278-298 26-46 (143)
100 1q0u_A Bstdead; DEAD protein, 55.2 2.8 9.4E-05 40.6 0.3 23 272-296 36-58 (219)
101 1hqc_A RUVB; extended AAA-ATPa 55.2 6.3 0.00022 40.2 3.1 44 248-296 10-55 (324)
102 1ofh_A ATP-dependent HSL prote 55.1 4.3 0.00015 41.0 1.8 19 279-297 50-68 (310)
103 3fmp_B ATP-dependent RNA helic 54.6 4.4 0.00015 44.2 1.8 25 271-295 123-147 (479)
104 1u0j_A DNA replication protein 54.4 5.4 0.00018 41.2 2.3 28 269-296 91-121 (267)
105 2j0s_A ATP-dependent RNA helic 54.2 4.4 0.00015 42.8 1.7 23 272-296 69-91 (410)
106 3cve_A Homer protein homolog 1 53.6 44 0.0015 27.7 7.2 51 647-700 18-68 (72)
107 1iqp_A RFCS; clamp loader, ext 53.6 5.3 0.00018 40.5 2.2 36 258-297 29-64 (327)
108 1sxj_D Activator 1 41 kDa subu 53.5 4.2 0.00014 42.0 1.4 42 248-297 35-76 (353)
109 3fht_A ATP-dependent RNA helic 53.0 4.7 0.00016 42.3 1.7 26 271-296 56-81 (412)
110 3pey_A ATP-dependent RNA helic 52.9 4.5 0.00015 42.0 1.5 26 271-296 36-61 (395)
111 2zan_A Vacuolar protein sortin 52.9 2.9 0.0001 45.8 0.1 51 246-296 130-184 (444)
112 2k48_A Nucleoprotein; viral pr 52.4 1.2E+02 0.0043 26.7 10.3 57 641-706 44-100 (107)
113 3cvf_A Homer-3, homer protein 52.1 30 0.001 29.2 6.1 52 646-700 23-74 (79)
114 1tue_A Replication protein E1; 52.0 3.9 0.00013 40.9 0.8 25 273-297 50-76 (212)
115 3hu3_A Transitional endoplasmi 51.8 4.6 0.00016 45.1 1.4 51 246-296 200-255 (489)
116 3h1t_A Type I site-specific re 51.7 6.1 0.00021 44.5 2.4 28 269-297 189-216 (590)
117 2fz4_A DNA repair protein RAD2 51.7 4.8 0.00017 40.1 1.4 34 253-296 92-125 (237)
118 4b4t_J 26S protease regulatory 51.3 5.4 0.00018 43.6 1.8 51 246-296 144-199 (405)
119 2z0m_A 337AA long hypothetical 51.2 5.4 0.00018 40.5 1.7 23 272-296 26-48 (337)
120 2ewv_A Twitching motility prot 50.8 5 0.00017 43.0 1.5 21 277-297 134-154 (372)
121 4b4t_I 26S protease regulatory 50.6 14 0.00047 40.9 4.9 52 245-296 177-233 (437)
122 1s2m_A Putative ATP-dependent 50.4 5.5 0.00019 41.8 1.7 23 272-296 53-75 (400)
123 1gvn_B Zeta; postsegregational 49.9 12 0.00041 38.5 4.1 31 266-296 15-50 (287)
124 4fcw_A Chaperone protein CLPB; 49.9 4.5 0.00016 41.1 0.9 18 279-296 47-64 (311)
125 3n70_A Transport activator; si 49.6 4.7 0.00016 36.7 0.9 20 277-296 22-41 (145)
126 2chq_A Replication factor C sm 49.4 5 0.00017 40.6 1.1 21 276-296 35-55 (319)
127 2oap_1 GSPE-2, type II secreti 48.8 6.6 0.00023 44.1 2.1 22 274-297 257-278 (511)
128 2i4i_A ATP-dependent RNA helic 48.7 6.2 0.00021 41.6 1.8 23 272-296 47-69 (417)
129 1zxa_A CGMP-dependent protein 48.4 19 0.00066 29.5 4.2 33 673-705 24-56 (67)
130 1w5s_A Origin recognition comp 47.2 6.3 0.00021 41.5 1.5 26 272-297 40-70 (412)
131 3fho_A ATP-dependent RNA helic 46.6 6.6 0.00023 43.6 1.7 25 272-296 151-175 (508)
132 3u61_B DNA polymerase accessor 46.3 11 0.00037 38.8 3.1 19 279-297 48-66 (324)
133 3pxg_A Negative regulator of g 45.9 10 0.00035 41.8 3.0 43 248-298 178-220 (468)
134 2r44_A Uncharacterized protein 45.2 5.2 0.00018 41.4 0.5 34 258-297 31-64 (331)
135 3oiy_A Reverse gyrase helicase 44.4 7.8 0.00027 41.2 1.8 24 271-296 30-53 (414)
136 3i5x_A ATP-dependent RNA helic 44.2 9.1 0.00031 42.5 2.3 25 271-295 103-127 (563)
137 1xti_A Probable ATP-dependent 43.8 8.2 0.00028 40.2 1.8 24 271-296 39-62 (391)
138 1deq_A Fibrinogen (alpha chain 43.1 55 0.0019 35.2 7.9 21 689-709 135-155 (390)
139 2jlq_A Serine protease subunit 43.1 7.4 0.00025 42.6 1.3 25 270-295 11-35 (451)
140 2p5t_B PEZT; postsegregational 42.9 9.9 0.00034 38.0 2.1 37 260-296 12-49 (253)
141 2db3_A ATP-dependent RNA helic 42.6 8.6 0.00029 41.6 1.7 23 272-296 88-110 (434)
142 4b4t_H 26S protease regulatory 42.5 4.3 0.00015 45.2 -0.7 51 246-296 205-260 (467)
143 2v1x_A ATP-dependent DNA helic 42.4 12 0.0004 42.7 2.9 24 271-296 53-76 (591)
144 3nmd_A CGMP dependent protein 42.3 45 0.0015 27.7 5.5 35 676-710 21-55 (72)
145 4b3f_X DNA-binding protein smu 42.2 8.6 0.00029 44.1 1.7 26 271-297 198-223 (646)
146 1in4_A RUVB, holliday junction 42.0 11 0.00039 39.2 2.5 16 281-296 53-68 (334)
147 1rif_A DAR protein, DNA helica 41.6 5.8 0.0002 40.1 0.2 14 283-296 132-145 (282)
148 1sxj_B Activator 1 37 kDa subu 41.6 8.8 0.0003 38.8 1.5 21 276-296 39-59 (323)
149 1jr3_A DNA polymerase III subu 41.5 15 0.00051 38.1 3.3 18 279-296 38-55 (373)
150 3c8u_A Fructokinase; YP_612366 40.7 14 0.00047 35.6 2.7 29 268-296 9-39 (208)
151 1qvr_A CLPB protein; coiled co 40.7 6.7 0.00023 46.6 0.5 43 248-298 168-210 (854)
152 4a2p_A RIG-I, retinoic acid in 40.6 10 0.00035 41.5 2.0 24 271-296 16-39 (556)
153 1n0w_A DNA repair protein RAD5 39.8 11 0.00036 36.6 1.8 30 268-297 10-42 (243)
154 2dhr_A FTSH; AAA+ protein, hex 39.7 6.1 0.00021 44.3 -0.0 16 281-296 66-81 (499)
155 3b85_A Phosphate starvation-in 39.6 11 0.00039 36.9 1.9 25 270-296 15-39 (208)
156 3ghg_A Fibrinogen alpha chain; 39.5 48 0.0016 37.1 6.9 40 671-710 114-153 (562)
157 3oja_B Anopheles plasmodium-re 39.3 1.6E+02 0.0054 32.8 11.6 74 628-708 505-578 (597)
158 1hv8_A Putative ATP-dependent 39.2 9.8 0.00034 38.9 1.5 24 272-296 38-61 (367)
159 3upu_A ATP-dependent DNA helic 38.8 13 0.00044 40.7 2.4 35 257-296 28-62 (459)
160 2d7d_A Uvrabc system protein B 38.4 26 0.00091 40.4 5.1 80 247-331 5-97 (661)
161 1w36_D RECD, exodeoxyribonucle 38.4 10 0.00036 43.3 1.6 18 279-296 164-181 (608)
162 3tbk_A RIG-I helicase domain; 38.4 12 0.0004 40.9 2.0 24 271-296 13-36 (555)
163 1rz3_A Hypothetical protein rb 38.2 15 0.0005 35.2 2.5 29 268-296 8-39 (201)
164 1fuu_A Yeast initiation factor 38.1 7 0.00024 40.7 0.1 24 271-296 52-75 (394)
165 1ojl_A Transcriptional regulat 38.1 11 0.00039 38.9 1.7 20 277-296 23-42 (304)
166 1sxj_E Activator 1 40 kDa subu 37.9 9.2 0.00031 39.6 1.0 16 282-297 39-54 (354)
167 2ic6_A Nucleocapsid protein; h 37.9 1.8E+02 0.0062 24.4 10.3 59 639-706 12-70 (78)
168 2ce7_A Cell division protein F 37.3 7 0.00024 43.6 -0.0 17 280-296 50-66 (476)
169 4a74_A DNA repair and recombin 37.2 13 0.00044 35.6 1.9 29 268-296 11-42 (231)
170 3cf2_A TER ATPase, transitiona 36.9 23 0.00077 42.1 4.2 51 246-296 200-255 (806)
171 2fwr_A DNA repair protein RAD2 36.7 11 0.00039 40.7 1.6 22 273-296 104-125 (472)
172 2w0m_A SSO2452; RECA, SSPF, un 36.6 13 0.00043 35.5 1.7 29 269-297 10-41 (235)
173 3sqw_A ATP-dependent RNA helic 36.3 14 0.00049 41.4 2.3 25 271-295 52-76 (579)
174 1c4o_A DNA nucleotide excision 36.2 17 0.00059 42.0 3.0 45 247-297 2-46 (664)
175 3b9q_A Chloroplast SRP recepto 35.8 17 0.0006 37.7 2.7 17 280-296 101-117 (302)
176 4gp7_A Metallophosphoesterase; 35.8 9.3 0.00032 35.8 0.6 18 280-297 10-27 (171)
177 2cvh_A DNA repair and recombin 35.7 13 0.00046 35.2 1.7 30 268-297 6-38 (220)
178 3pxi_A Negative regulator of g 35.5 19 0.00064 42.0 3.2 42 248-297 178-219 (758)
179 1ypw_A Transitional endoplasmi 35.4 14 0.00048 43.8 2.1 52 245-296 199-255 (806)
180 2wuj_A Septum site-determining 35.0 39 0.0013 26.5 4.0 37 668-704 18-57 (57)
181 4gl2_A Interferon-induced heli 34.9 13 0.00046 42.4 1.8 24 271-296 16-39 (699)
182 4fi5_A Nucleoprotein; structur 34.3 2.5E+02 0.0087 25.0 10.3 59 640-707 30-88 (113)
183 2ic9_A Nucleocapsid protein; h 34.0 2.4E+02 0.0081 24.6 10.3 59 639-706 12-70 (96)
184 2ehv_A Hypothetical protein PH 34.0 11 0.00037 36.7 0.7 18 280-297 31-48 (251)
185 1r6b_X CLPA protein; AAA+, N-t 33.9 16 0.00056 42.4 2.4 43 248-298 184-226 (758)
186 1um8_A ATP-dependent CLP prote 33.5 10 0.00035 40.0 0.5 18 279-296 72-89 (376)
187 2gk6_A Regulator of nonsense t 33.3 14 0.00049 42.2 1.7 18 280-297 196-213 (624)
188 3hws_A ATP-dependent CLP prote 32.4 11 0.00036 39.8 0.4 18 279-296 51-68 (363)
189 3twe_A Alpha4H; unknown functi 31.8 46 0.0016 21.7 3.1 18 688-705 8-25 (27)
190 4ag6_A VIRB4 ATPase, type IV s 31.7 10 0.00036 40.3 0.2 19 279-297 35-53 (392)
191 1wp9_A ATP-dependent RNA helic 31.6 15 0.0005 38.8 1.3 22 272-296 19-40 (494)
192 3e70_C DPA, signal recognition 31.4 24 0.00084 37.1 3.0 18 279-296 129-146 (328)
193 3tr0_A Guanylate kinase, GMP k 31.4 12 0.00041 35.3 0.6 16 281-296 9-24 (205)
194 1deq_A Fibrinogen (alpha chain 31.3 2.4E+02 0.0083 30.3 10.5 17 689-706 129-145 (390)
195 3efg_A Protein SLYX homolog; x 31.2 51 0.0018 27.6 4.4 36 673-708 27-62 (78)
196 2gza_A Type IV secretion syste 31.0 18 0.00061 38.4 1.9 20 275-296 173-192 (361)
197 3lw7_A Adenylate kinase relate 30.9 14 0.00048 33.3 0.9 16 281-296 3-18 (179)
198 3nbx_X ATPase RAVA; AAA+ ATPas 30.8 19 0.00064 40.4 2.1 26 270-297 34-59 (500)
199 2ykg_A Probable ATP-dependent 30.7 19 0.00066 41.0 2.2 23 272-296 23-45 (696)
200 2dr3_A UPF0273 protein PH0284; 30.7 17 0.00058 35.1 1.5 28 269-296 10-40 (247)
201 1nkp_B MAX protein, MYC proto- 30.2 79 0.0027 26.3 5.4 34 673-706 46-79 (83)
202 3tau_A Guanylate kinase, GMP k 30.2 13 0.00044 35.9 0.6 17 280-296 9-25 (208)
203 1e9r_A Conjugal transfer prote 30.0 12 0.0004 40.5 0.2 19 279-297 53-71 (437)
204 1kgd_A CASK, peripheral plasma 29.9 13 0.00045 34.9 0.5 16 281-296 7-22 (180)
205 3pxi_A Negative regulator of g 29.7 26 0.0009 40.8 3.2 16 281-296 523-538 (758)
206 2og2_A Putative signal recogni 29.5 26 0.0009 37.4 2.9 17 280-296 158-174 (359)
207 2qen_A Walker-type ATPase; unk 29.3 20 0.00069 36.4 1.9 17 280-296 32-48 (350)
208 1sxj_A Activator 1 95 kDa subu 29.2 19 0.00066 40.0 1.8 17 280-296 78-94 (516)
209 2qag_C Septin-7; cell cycle, c 28.8 15 0.0005 40.3 0.7 23 274-296 26-48 (418)
210 1zp6_A Hypothetical protein AT 28.3 14 0.00049 34.4 0.5 17 280-296 10-26 (191)
211 1moz_A ARL1, ADP-ribosylation 28.2 21 0.00073 32.5 1.7 29 268-296 6-35 (183)
212 1nlw_A MAD protein, MAX dimeri 28.0 86 0.003 26.2 5.2 34 673-706 46-79 (80)
213 3lfu_A DNA helicase II; SF1 he 27.9 17 0.00057 41.2 1.0 20 277-296 20-39 (647)
214 2qnr_A Septin-2, protein NEDD5 27.9 15 0.0005 38.1 0.5 24 273-296 12-35 (301)
215 4a4z_A Antiviral helicase SKI2 27.8 23 0.00077 43.1 2.2 23 271-295 48-70 (997)
216 3a00_A Guanylate kinase, GMP k 27.7 14 0.00046 34.9 0.2 15 282-296 4-18 (186)
217 2r8r_A Sensor protein; KDPD, P 27.7 18 0.00063 36.4 1.2 19 279-297 6-24 (228)
218 1ye8_A Protein THEP1, hypothet 27.0 15 0.0005 35.0 0.3 15 282-296 3-17 (178)
219 1r6b_X CLPA protein; AAA+, N-t 26.9 33 0.0011 39.8 3.4 17 280-296 489-505 (758)
220 1odf_A YGR205W, hypothetical 3 26.9 30 0.001 35.7 2.7 37 260-296 10-48 (290)
221 1rj9_A FTSY, signal recognitio 26.7 18 0.00062 37.6 0.9 17 280-296 103-119 (304)
222 1lvg_A Guanylate kinase, GMP k 26.6 14 0.00048 35.4 0.1 16 281-296 6-21 (198)
223 3lnc_A Guanylate kinase, GMP k 26.3 21 0.00071 34.8 1.3 16 281-296 29-44 (231)
224 3e1s_A Exodeoxyribonuclease V, 26.2 22 0.00077 40.3 1.7 19 279-297 204-222 (574)
225 1qvr_A CLPB protein; coiled co 26.1 34 0.0012 40.5 3.3 17 280-296 589-605 (854)
226 3sop_A Neuronal-specific septi 26.1 16 0.00056 37.2 0.5 18 279-296 2-19 (270)
227 4a2q_A RIG-I, retinoic acid in 26.0 24 0.00083 41.3 2.0 24 271-296 257-280 (797)
228 1ly1_A Polynucleotide kinase; 26.0 19 0.00064 33.0 0.8 16 281-296 4-19 (181)
229 1oyw_A RECQ helicase, ATP-depe 25.8 14 0.00047 41.4 -0.2 24 271-296 34-57 (523)
230 3trf_A Shikimate kinase, SK; a 25.6 19 0.00066 33.4 0.8 16 281-296 7-22 (185)
231 2j41_A Guanylate kinase; GMP, 25.4 18 0.00061 34.1 0.6 16 281-296 8-23 (207)
232 2xzl_A ATP-dependent helicase 25.4 23 0.00079 42.0 1.6 18 280-297 376-393 (802)
233 2bdt_A BH3686; alpha-beta prot 25.2 18 0.00061 33.9 0.5 16 281-296 4-19 (189)
234 2oca_A DAR protein, ATP-depend 25.2 19 0.00064 39.4 0.7 33 254-296 113-145 (510)
235 2wjy_A Regulator of nonsense t 24.9 24 0.00083 41.7 1.7 18 280-297 372-389 (800)
236 2b8t_A Thymidine kinase; deoxy 24.8 13 0.00046 37.0 -0.4 20 279-298 12-31 (223)
237 2v6i_A RNA helicase; membrane, 24.8 26 0.00088 38.0 1.8 16 281-296 4-19 (431)
238 4a2w_A RIG-I, retinoic acid in 24.8 25 0.00085 42.3 1.8 23 272-296 258-280 (936)
239 2akf_A Coronin-1A; coiled coil 24.7 87 0.003 21.4 3.6 17 687-703 12-28 (32)
240 2px0_A Flagellar biosynthesis 24.6 20 0.00068 37.1 0.8 18 280-297 106-123 (296)
241 1qhx_A CPT, protein (chloramph 24.6 21 0.0007 32.9 0.8 17 280-296 4-20 (178)
242 1gm5_A RECG; helicase, replica 24.5 26 0.00088 41.4 1.8 25 272-296 382-406 (780)
243 2fna_A Conserved hypothetical 24.5 26 0.0009 35.6 1.7 17 280-296 31-47 (357)
244 1znw_A Guanylate kinase, GMP k 24.4 19 0.00064 34.6 0.5 16 281-296 22-37 (207)
245 1lkx_A Myosin IE heavy chain; 24.1 36 0.0012 39.7 2.9 22 275-296 90-111 (697)
246 3kta_A Chromosome segregation 24.1 19 0.00066 33.3 0.5 16 281-296 28-43 (182)
247 1gku_B Reverse gyrase, TOP-RG; 23.8 31 0.0011 42.1 2.4 21 272-294 66-86 (1054)
248 3iij_A Coilin-interacting nucl 23.5 21 0.0007 33.1 0.6 17 280-296 12-28 (180)
249 2pt7_A CAG-ALFA; ATPase, prote 23.5 17 0.00059 38.2 0.0 21 274-296 168-188 (330)
250 3i00_A HIP-I, huntingtin-inter 23.4 2.4E+02 0.0082 25.4 7.6 29 672-700 45-80 (120)
251 2yhs_A FTSY, cell division pro 23.4 35 0.0012 38.3 2.5 17 280-296 294-310 (503)
252 2orw_A Thymidine kinase; TMTK, 23.3 20 0.00068 34.2 0.4 17 281-297 5-21 (184)
253 2z83_A Helicase/nucleoside tri 23.2 30 0.001 37.7 2.0 15 281-295 23-37 (459)
254 3uie_A Adenylyl-sulfate kinase 23.0 28 0.00096 33.0 1.5 19 278-296 24-42 (200)
255 1j8m_F SRP54, signal recogniti 23.0 60 0.002 33.5 4.1 17 281-297 100-116 (297)
256 1w9i_A Myosin II heavy chain; 22.8 40 0.0014 39.9 2.9 21 276-296 169-189 (770)
257 3kl4_A SRP54, signal recogniti 22.7 52 0.0018 36.1 3.7 18 280-297 98-115 (433)
258 1i84_S Smooth muscle myosin he 22.5 44 0.0015 41.3 3.4 34 262-295 152-185 (1184)
259 1uaa_A REP helicase, protein ( 22.4 25 0.00085 40.3 1.1 20 278-297 14-33 (673)
260 1yks_A Genome polyprotein [con 22.3 29 0.00099 37.7 1.6 21 274-296 5-25 (440)
261 2eyq_A TRCF, transcription-rep 22.3 43 0.0015 41.3 3.2 26 270-295 615-640 (1151)
262 2v26_A Myosin VI; calmodulin-b 22.2 41 0.0014 39.8 2.9 21 276-296 137-157 (784)
263 2i3b_A HCR-ntpase, human cance 22.0 21 0.00071 34.4 0.3 16 281-296 3-18 (189)
264 1w4r_A Thymidine kinase; type 22.0 25 0.00087 34.5 0.9 22 275-296 16-38 (195)
265 2iut_A DNA translocase FTSK; n 21.8 47 0.0016 37.9 3.1 18 280-297 215-232 (574)
266 1z6g_A Guanylate kinase; struc 21.6 20 0.00069 34.9 0.1 15 282-296 26-40 (218)
267 2zj8_A DNA helicase, putative 21.4 21 0.00072 41.3 0.2 17 280-296 40-56 (720)
268 3umf_A Adenylate kinase; rossm 21.4 26 0.0009 34.7 0.9 30 281-310 31-66 (217)
269 3vaa_A Shikimate kinase, SK; s 21.4 26 0.0009 33.2 0.9 16 281-296 27-42 (199)
270 2ze6_A Isopentenyl transferase 21.3 26 0.00088 35.1 0.8 16 281-296 3-18 (253)
271 1f2t_A RAD50 ABC-ATPase; DNA d 21.3 26 0.00089 32.2 0.8 17 281-297 25-41 (149)
272 3sr0_A Adenylate kinase; phosp 21.1 25 0.00087 34.3 0.7 29 282-310 3-37 (206)
273 1g8x_A Myosin II heavy chain f 21.1 43 0.0015 40.8 2.8 21 276-296 169-189 (1010)
274 1kht_A Adenylate kinase; phosp 21.1 28 0.00096 32.1 1.0 17 280-296 4-20 (192)
275 3dm5_A SRP54, signal recogniti 21.0 52 0.0018 36.2 3.3 19 279-297 100-118 (443)
276 1w7j_A Myosin VA; motor protei 20.7 46 0.0016 39.5 2.9 21 276-296 153-173 (795)
277 2ycu_A Non muscle myosin 2C, a 20.7 45 0.0015 40.5 2.9 21 276-296 143-163 (995)
278 4db1_A Myosin-7; S1DC, cardiac 20.7 46 0.0016 39.4 2.9 21 276-296 168-188 (783)
279 3t5d_A Septin-7; GTP-binding p 20.6 24 0.00083 35.5 0.5 21 276-296 5-25 (274)
280 1kag_A SKI, shikimate kinase I 20.6 26 0.00089 32.0 0.7 16 281-296 6-21 (173)
281 1nkp_A C-MYC, MYC proto-oncoge 20.5 1.6E+02 0.0056 24.9 5.6 34 673-706 51-84 (88)
282 1knq_A Gluconate kinase; ALFA/ 20.5 26 0.00088 32.2 0.6 17 280-296 9-25 (175)
283 1vma_A Cell division protein F 20.2 25 0.00087 36.6 0.5 17 280-296 105-121 (306)
284 2fup_A Hypothetical protein PA 20.2 3E+02 0.01 24.9 7.9 49 630-694 8-56 (157)
285 1kk8_A Myosin heavy chain, str 20.1 43 0.0015 40.0 2.5 21 276-296 166-186 (837)
286 1a5t_A Delta prime, HOLB; zinc 20.1 41 0.0014 34.9 2.1 34 259-296 7-41 (334)
287 3kb2_A SPBC2 prophage-derived 20.1 29 0.00099 31.4 0.8 16 281-296 3-18 (173)
288 2jee_A YIIU; FTSZ, septum, coi 20.1 4E+02 0.014 22.5 7.7 30 676-705 43-72 (81)
No 1
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=9.7e-86 Score=718.89 Aligned_cols=323 Identities=59% Similarity=0.854 Sum_probs=276.1
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
...++|+|+|||||++.+|...++.++|.+.+ +.+.+++++.+++.+.+.+.+.|.||+||+++++|++||+.+++|+|
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 34789999999999999999988888888754 67888888888888777788999999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC------------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCceeeccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP------------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLL 338 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------------l~~~a~~~If~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL 338 (715)
+.+|+|||+||||||||||||||||.| +.++++++||..+.. ......|.|+|||+|||||+|+|||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL 207 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence 999999999999999999999999976 568899999998875 3356789999999999999999999
Q ss_pred CCccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeE
Q 005092 339 SDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLV 418 (715)
Q Consensus 339 ~~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 418 (715)
+++.++.++||++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+. ....
T Consensus 208 ~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~~ 279 (387)
T 2heh_A 208 NKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--------GRMH 279 (387)
T ss_dssp TTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS--------SSEE
T ss_pred CCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC--------Ceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999853 2468
Q ss_pred EEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccc-cCCcceeEEEEec
Q 005092 419 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGNSRTVMISCI 497 (715)
Q Consensus 419 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrds-LgGnsrT~mIa~I 497 (715)
|+|+|||||||||..++...++++++|++.||+||++|++||.||..++.|||||+||||+||||+ |||||+|+||+||
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~i 359 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATI 359 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEE
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEe
Confidence 999999999999988887777788889999999999999999999999999999999999999999 5999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhhccccC
Q 005092 498 SPSSGCCEHTLNTLRYADRVKSLSKG 523 (715)
Q Consensus 498 SP~~~~~eETLsTLrfA~Rak~i~~~ 523 (715)
||+..+++|||+||+||+|||+|+..
T Consensus 360 sP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 360 SPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999753
No 2
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.6e-85 Score=719.69 Aligned_cols=324 Identities=58% Similarity=0.849 Sum_probs=276.0
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 272 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~ 272 (715)
..++|+|||||||++..|...++.++|.+.+ +.+.+++++.+++.+.+.+.+.|.||+||+++++|++||+.+++|||+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 4789999999999999999988888888754 688888888888887777889999999999999999999999999999
Q ss_pred HHhcCCCeEEEeeccCCCCCcccccC------------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCceeecccC
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTMKP------------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLS 339 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM~G------------l~~~a~~~If~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~ 339 (715)
++|+|||+||||||||||||||||.| +.++++.+||..+.. ......|.|+|||+|||||+|+|||+
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence 99999999999999999999999976 567889999998875 33467899999999999999999999
Q ss_pred CccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEE
Q 005092 340 DRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVG 419 (715)
Q Consensus 340 ~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 419 (715)
+..++.+++|++++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+. ....|
T Consensus 229 ~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~~s 300 (410)
T 1v8k_A 229 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------GRLHG 300 (410)
T ss_dssp TTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------SSEEE
T ss_pred CCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC--------Cccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999763 24689
Q ss_pred EEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccc-cCCcceeEEEEecC
Q 005092 420 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGNSRTVMISCIS 498 (715)
Q Consensus 420 kL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrds-LgGnsrT~mIa~IS 498 (715)
+|+|||||||||..++...++++++|+++||+||++|++||.||..++.|||||+||||+||||+ |||||+|+||+|||
T Consensus 301 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iS 380 (410)
T 1v8k_A 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMIS 380 (410)
T ss_dssp EEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEEC
T ss_pred EEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeC
Confidence 99999999999988887777778889999999999999999999999999999999999999999 59999999999999
Q ss_pred CCCCChHhHHHHHHHHHHhhccccCCC
Q 005092 499 PSSGCCEHTLNTLRYADRVKSLSKGNN 525 (715)
Q Consensus 499 P~~~~~eETLsTLrfA~Rak~i~~~~~ 525 (715)
|+..+++|||+||+||+|||+|...|.
T Consensus 381 P~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 381 PGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp CBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CccccHHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999976553
No 3
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.2e-85 Score=707.28 Aligned_cols=335 Identities=35% Similarity=0.523 Sum_probs=275.3
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEeccccccccc-ccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 195 VAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLT-EYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~-~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
.++|+|+||+||++.+|...+...++.+.+ .++++..|......+ .....+.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 478999999999999999988888888753 678887765432222 23356889999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCcccee
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLC 345 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~l~ 345 (715)
+.+|+|||+||||||||||||||||.| +.|+++.+||..+........|.|+|||+|||||+|+|||++++++.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~ 162 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP 162 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEEC
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCce
Confidence 999999999999999999999999975 78999999999998766677899999999999999999999999999
Q ss_pred eEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEE
Q 005092 346 MREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 425 (715)
Q Consensus 346 i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 425 (715)
+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .......|+|+|||
T Consensus 163 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~skl~lVD 241 (350)
T 2vvg_A 163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE-NKEVIRVGKLNLVD 241 (350)
T ss_dssp EEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEE
T ss_pred eeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC-CCccEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998764332 22345789999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCChH
Q 005092 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCE 505 (715)
Q Consensus 426 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~e 505 (715)
||||||..+++.. +.+++|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+..+++
T Consensus 242 LAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 242 LAGSERQSKTGAT-GETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CCCCCC----------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccc-HHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 9999998776554 567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccCCCCCcccc
Q 005092 506 HTLNTLRYADRVKSLSKGNNPKKDIL 531 (715)
Q Consensus 506 ETLsTLrfA~Rak~i~~~~~~~~~~~ 531 (715)
||++||+||+|||+|++.|.++.++.
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred HHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999998887653
No 4
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.3e-84 Score=705.36 Aligned_cols=326 Identities=36% Similarity=0.542 Sum_probs=265.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEeccccc-cc------------ccccccceeEEeeeecCCCCChH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLK-VD------------LTEYVEKHEFVFDAVLNEEVSND 260 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k-~~------------~~~~~~~~~F~FD~VF~~~asQe 260 (715)
..++|||||||||++.+|...+..++|.+.++.+.+.+|+.. +. .......+.|.||+||+++++|+
T Consensus 8 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~ 87 (355)
T 3lre_A 8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQS 87 (355)
T ss_dssp ----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHH
T ss_pred ccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChH
Confidence 568899999999999999999999999987766666555422 11 01123456899999999999999
Q ss_pred HHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCcee
Q 005092 261 EVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKL 334 (715)
Q Consensus 261 eVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v 334 (715)
+||+.+++|+|+.+|+|||+||||||||||||||||.| +.++++.+||..+........|.|+|||+|||||+|
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i 167 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQI 167 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEE
Confidence 99999999999999999999999999999999999975 779999999999988666778999999999999999
Q ss_pred ecccCCccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCC
Q 005092 335 FDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKP 414 (715)
Q Consensus 335 ~DLL~~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 414 (715)
+|||++..++.+++|++++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.........
T Consensus 168 ~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 247 (355)
T 3lre_A 168 RDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQ 247 (355)
T ss_dssp EESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTC
T ss_pred EECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765444344
Q ss_pred CeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC---CCCcCCCCccccccccccCCccee
Q 005092 415 PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGNSRT 491 (715)
Q Consensus 415 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgGnsrT 491 (715)
....|+|+|||||||||..+++. .+.+++|+.+||+||++|++||.||.+++ .|||||+||||+||||+|||||+|
T Consensus 248 ~~~~skl~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt 326 (355)
T 3lre_A 248 NVRIAKMSLIDLAGSERASTSGA-KGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQT 326 (355)
T ss_dssp CCCCEEEEEEECCCCCC------------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEE
T ss_pred CEEEEEEEEEECCCCCcCcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceE
Confidence 56789999999999999776654 45677899999999999999999998753 599999999999999999999999
Q ss_pred EEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005092 492 VMISCISPSSGCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 492 ~mIa~ISP~~~~~eETLsTLrfA~Rak~i 520 (715)
+||+||||+..+++|||+||+||+|||+|
T Consensus 327 ~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 327 IMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 5
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-84 Score=704.15 Aligned_cols=326 Identities=48% Similarity=0.777 Sum_probs=286.0
Q ss_pred CeEEEEEeCCCCchhhhcCCCceEEEc-CCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005092 197 KIKVVVRKRPLNKKELAKNEEDIIETY-SNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 275 (715)
Q Consensus 197 ~IkV~VRvRPl~~~E~~~~~~~~i~~~-~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~vl 275 (715)
+|||+|||||++..|...+..+++.+. +.++.+.+|+.+++.+.+.+.+.|.||+||+++++|++||+.+++|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 599999999999999998888888774 4688888888777777777788999999999999999999999999999999
Q ss_pred c-CCCeEEEeeccCCCCCcccccC-----------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCccc
Q 005092 276 Q-RTKATCFAYGQTGSGKTYTMKP-----------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK 343 (715)
Q Consensus 276 ~-G~N~tvfAYGqTGSGKTyTM~G-----------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~ 343 (715)
+ ||||||||||||||||||||.| +.++++.+||..+........|.|+|||+|||||+|+|||++++.
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 160 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKM 160 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCcc
Confidence 6 9999999999999999999965 568899999999987666778999999999999999999999988
Q ss_pred eeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEE
Q 005092 344 LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 423 (715)
Q Consensus 344 l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~f 423 (715)
+.++++++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.. .....|+|+|
T Consensus 161 ~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~------~~~~~skL~l 234 (360)
T 1ry6_A 161 VAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN------KNTSLGKIAF 234 (360)
T ss_dssp --------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT------TTEEEEEEEE
T ss_pred ceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc------CCcceeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998742 2356899999
Q ss_pred EECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 424 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 424 VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
||||||||..++...++++++|+..||+||++|++||.||..++.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 314 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISC 314 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCccc
Confidence 99999999988887777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhccccCCCCCc
Q 005092 504 CEHTLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 504 ~eETLsTLrfA~Rak~i~~~~~~~~ 528 (715)
++|||+||+||+|||+|++.+..++
T Consensus 315 ~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 315 CEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp HHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHhhcccCcccCC
Confidence 9999999999999999998765443
No 6
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=7.5e-84 Score=701.79 Aligned_cols=332 Identities=38% Similarity=0.545 Sum_probs=286.1
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
..++|+|+||+||++.+|...+...++.+.. +.+.+..|+.. .....+.|.||+||+++++|++||+.+++|+|
T Consensus 19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~----~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv 94 (372)
T 3b6u_A 19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT----AHEMPKTFTFDAVYDWNAKQFELYDETFRPLV 94 (372)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT----TTCCCEEEECSEEECTTCCHHHHHHHTHHHHH
T ss_pred CCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC----CCCCceEEEcCeEeCCcCchHHHHHHHHHHHH
Confidence 5688999999999999999888888887754 67787766532 12345789999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc-
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR- 341 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~- 341 (715)
+.+|+|||+||||||||||||||||.| ++|+++.+||..+.. .....|.|+|||+|||||+|+|||++.
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 173 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQ 173 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCCCC
Confidence 999999999999999999999999965 578999999999876 456789999999999999999999864
Q ss_pred -cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEE
Q 005092 342 -KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGK 420 (715)
Q Consensus 342 -~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 420 (715)
+++.++++++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|...............|+
T Consensus 174 ~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~sk 253 (372)
T 3b6u_A 174 TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGK 253 (372)
T ss_dssp TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEE
T ss_pred CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999988654333344567899
Q ss_pred EEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC-CCCcCCCCccccccccccCCcceeEEEEecCC
Q 005092 421 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGNSRTVMISCISP 499 (715)
Q Consensus 421 L~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP 499 (715)
|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.+++ .|||||+||||+||||+|||||+|+||+||||
T Consensus 254 L~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP 332 (372)
T 3b6u_A 254 LNLVDLAGSERQAKTGAQ-GERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGP 332 (372)
T ss_dssp EEEEECCCCCE-----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECC
T ss_pred EEEEECCCCccccccCcc-hhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCC
Confidence 999999999998777655 4556699999999999999999998765 69999999999999999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHhhccccCCCCCcccc
Q 005092 500 SSGCCEHTLNTLRYADRVKSLSKGNNPKKDIL 531 (715)
Q Consensus 500 ~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~ 531 (715)
+..+++||++||+||+|||+|++.+.++.++.
T Consensus 333 ~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~ 364 (372)
T 3b6u_A 333 ASYNVEETLTTLRYANRAKNIKNKPRVNEDPK 364 (372)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCBCCCCCCC---
T ss_pred cccCHHHHHHHHHHHHHHhhccccceecCChH
Confidence 99999999999999999999999998887654
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-83 Score=699.10 Aligned_cols=328 Identities=35% Similarity=0.533 Sum_probs=276.1
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
..++|+|+|||||++..|...+...++.+.+ ..+.+..+. .......+.|.||+||+++++|++||+.+++|+|
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~----~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 81 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGG----LADKSSRKTYTFDMVFGASTKQIDVYRSVVCPIL 81 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEE----ETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCC----ccCCcCceEEeceEEEeccCchhHHHHHHHHHhH
Confidence 5688999999999999999888888887755 456665322 1222356789999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc-----------------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCcee
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK-----------------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKL 334 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~-----------------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v 334 (715)
+.+|+|||+||||||||||||||||. |+.|+++.+||..+.. ....|.|+|||+|||||+|
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i 159 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEEL 159 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEE
T ss_pred HHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCcee
Confidence 99999999999999999999999996 4668888999988865 4567999999999999999
Q ss_pred ecccCCc----cceeeEecCC--CcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecC
Q 005092 335 FDLLSDR----KKLCMREDGK--QQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSAD 408 (715)
Q Consensus 335 ~DLL~~~----~~l~i~ed~~--~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 408 (715)
+|||++. .++.+++|+. ++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.....
T Consensus 160 ~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~ 239 (359)
T 1x88_A 160 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239 (359)
T ss_dssp EETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEE
T ss_pred eehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecc
Confidence 9999864 4689999974 789999999999999999999999999999999999999999999999999987543
Q ss_pred CCCCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCc
Q 005092 409 GSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGN 488 (715)
Q Consensus 409 ~~~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGn 488 (715)
..........|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..+..|||||+||||+||||+||||
T Consensus 240 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGn 318 (359)
T 1x88_A 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAV-DKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGR 318 (359)
T ss_dssp CTTSCEEEEEEEEEEEECCCCCC----------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSS
T ss_pred cCCCCceEEEEEEEEEcCCCCCcccccCCc-ccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCC
Confidence 322223456899999999999998777655 4566799999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc
Q 005092 489 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 489 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~ 528 (715)
|+|+||+||||+..+++||++||+||+|||+|++.|.++.
T Consensus 319 skt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 319 TRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp SEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999999999999987764
No 8
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=4.6e-83 Score=692.89 Aligned_cols=327 Identities=35% Similarity=0.510 Sum_probs=294.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 272 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~ 272 (715)
+.++|+|+||+||++..|...+...++.+.+ ..+.+... ...+.|.||+||+++++|++||+.+++|+|+
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~---------~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 74 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK---------EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVD 74 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST---------TCCEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC---------CCccEEeeCeEECCCCccHHHHHHHHHHHHH
Confidence 5689999999999999999888888888765 34433221 2457899999999999999999999999999
Q ss_pred HHhcCCCeEEEeeccCCCCCcccccC----------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc-
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTMKP----------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR- 341 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM~G----------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~- 341 (715)
.+|+|||+||||||||||||||||+| +.|+++.+||..+........|.|+|||+|||||+|+|||++.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 154 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN 154 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC
T ss_pred HHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc
Confidence 99999999999999999999999965 5689999999998876667789999999999999999999865
Q ss_pred cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEE
Q 005092 342 KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKL 421 (715)
Q Consensus 342 ~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 421 (715)
..+.++++++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+|
T Consensus 155 ~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL 231 (355)
T 1goj_A 155 DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---GSAKSGQL 231 (355)
T ss_dssp CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT---TEEEEEEE
T ss_pred CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC---CceeeeEE
Confidence 568999999999999999999999999999999999999999999999999999999999998864332 34578999
Q ss_pred EEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCcceeEEEEecCCC
Q 005092 422 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPS 500 (715)
Q Consensus 422 ~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~ 500 (715)
+|||||||||..+++.. +++.+|+..||+||++|++||.||.++ ..|||||+||||+||||+|||||+|+||+||||+
T Consensus 232 ~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~ 310 (355)
T 1goj_A 232 FLVDLAGSEKVGKTGAS-GQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPS 310 (355)
T ss_dssp EEEECCCCSCCTTSSSC-CCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCB
T ss_pred EEEECCCCCcccccccc-hhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcc
Confidence 99999999998776654 456679999999999999999999875 5899999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhhccccCCCCCcccccc
Q 005092 501 SGCCEHTLNTLRYADRVKSLSKGNNPKKDILSS 533 (715)
Q Consensus 501 ~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~ 533 (715)
..+++||++||+||+|||+|++.+.++.++...
T Consensus 311 ~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 311 SYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred cccHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 999999999999999999999999888766543
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=7e-83 Score=694.34 Aligned_cols=327 Identities=34% Similarity=0.520 Sum_probs=278.2
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCC--------CChHHHHHHh
Q 005092 195 VAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE--------VSNDEVYRET 266 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~--------asQeeVy~~~ 266 (715)
+++|+|+|||||++.+|...+..+++.+.++.+.+..++.. ....+.|.||+||++. ++|++||+.+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~-----~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~ 77 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP-----KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDI 77 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT-----TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHT
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC-----CCCceEEecceEeecCccccccccCcHHHHHHHH
Confidence 46899999999999999998888999998888887765432 1245789999999887 8999999999
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCcccccC--------CChhhHHHHHHHHhhh-ccCcceEEEEEEEEEeCceeecc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP--------LPLKASRDILRLMHHT-YRSQGFQLFVSFFEIYGGKLFDL 337 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G--------l~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIYnE~v~DL 337 (715)
++|+|+.+|+|||+||||||||||||||||+| ++|+++.+||..+... .....|.|+|||+|||||+|+||
T Consensus 78 ~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DL 157 (366)
T 2zfi_A 78 GEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDL 157 (366)
T ss_dssp HHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEc
Confidence 99999999999999999999999999999965 6789999999999763 24567999999999999999999
Q ss_pred cCCc--cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCC-CC
Q 005092 338 LSDR--KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSES-KP 414 (715)
Q Consensus 338 L~~~--~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~-~~ 414 (715)
|++. ..+.+++++..+++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+....... ..
T Consensus 158 L~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 237 (366)
T 2zfi_A 158 LNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237 (366)
T ss_dssp TCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCE
T ss_pred cccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCcc
Confidence 9875 46999999999999999999999999999999999999999999999999999999999999876433221 22
Q ss_pred CeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC------------CCCCCcCCCCccccccc
Q 005092 415 PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------------DQGHIPFRGSKLTEVLR 482 (715)
Q Consensus 415 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~------------~~~hIPyRdSKLTrLLr 482 (715)
....|+|+|||||||||..+++. .+.+.+|+..||+||++|++||.||.. +..|||||+||||+|||
T Consensus 238 ~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLq 316 (366)
T 2zfi_A 238 TEKVSKISLVDLAGSERADSTGA-KGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316 (366)
T ss_dssp EEEEEEEEEEECCCGGGC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTG
T ss_pred ceeEeEEEEEeCCCCccccccCC-CccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHH
Confidence 34679999999999999776654 456777999999999999999999975 35799999999999999
Q ss_pred cccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCC
Q 005092 483 DSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPK 527 (715)
Q Consensus 483 dsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~ 527 (715)
|+|||||+|+||+||||+..+++||++||+||+|||+|++.+.+.
T Consensus 317 dsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp GGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred HHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 999999999999999999999999999999999999999877553
No 10
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-83 Score=697.62 Aligned_cols=333 Identities=30% Similarity=0.458 Sum_probs=249.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEE-cCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIET-YSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~-~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
...++|+|+|||||++..|...+...++.. ++..+.+..++ ...+.+.|.||+||+++++|++||+.+++|+|
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~------~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv 91 (388)
T 3bfn_A 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR------NHQETLKYQFDAFYGERSTQQDIYAGSVQPIL 91 (388)
T ss_dssp SCCCCCEEEEEECCCC-----------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGH
T ss_pred CCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCC------CCCCeeEEEcceEecCCCCHhHHHHHHHHHHH
Confidence 367899999999999999987665555543 44455554322 12345789999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhh---ccCcceEEEEEEEEEeCceeecccCCc-
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHT---YRSQGFQLFVSFFEIYGGKLFDLLSDR- 341 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~---~~~~~~~V~vS~~EIYnE~v~DLL~~~- 341 (715)
+.+|+|||+||||||||||||||||+| ++|+++.+||..+... .....|.|+|||+|||||+|+|||++.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~ 171 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS 171 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS
T ss_pred HHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC
Confidence 999999999999999999999999974 7899999999998763 234579999999999999999999875
Q ss_pred cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEE
Q 005092 342 KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKL 421 (715)
Q Consensus 342 ~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 421 (715)
..+.|+||+.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ......|+|
T Consensus 172 ~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~skL 249 (388)
T 3bfn_A 172 GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA--PFRQREGKL 249 (388)
T ss_dssp CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST--TCCEEEEEE
T ss_pred CCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC--CCceeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999998764332 123578999
Q ss_pred EEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCC
Q 005092 422 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 501 (715)
Q Consensus 422 ~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 501 (715)
+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+.
T Consensus 250 ~lVDLAGSEr~~~t~~~-g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~ 328 (388)
T 3bfn_A 250 YLIDLAGSEDNRRTGNK-GLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPER 328 (388)
T ss_dssp EEEECCCTTC---------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSG
T ss_pred EEEECCCCcccccccCc-cchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCcc
Confidence 99999999998776544 55677999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhccccCCCCCccccccc
Q 005092 502 GCCEHTLNTLRYADRVKSLSKGNNPKKDILSST 534 (715)
Q Consensus 502 ~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~ 534 (715)
.+++||++||+||+|||+|++.|.++.+.....
T Consensus 329 ~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~ 361 (388)
T 3bfn_A 329 RFYLDTVSALNFAARSKEVINRPFTNESLQPHA 361 (388)
T ss_dssp GGHHHHHHHHHHHCSEEEEC-------------
T ss_pred ccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHH
Confidence 999999999999999999999998887765543
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6.4e-83 Score=695.90 Aligned_cols=330 Identities=33% Similarity=0.513 Sum_probs=276.5
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
...++|+|+|||||++.+|...+...++.+.+ ..+.+..+. .....+.|.||+||+++++|++||+.+++|+|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv 93 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL------DSKLTKKFTFDRSFGPESKQCDVYSVVVSPLI 93 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSS------SSTTCEEEECSEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCC------CCCCceEEeccEEeccccchhHHHHHHHHHHH
Confidence 36688999999999999998888888887755 455554322 11245789999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC-----------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCcee
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP-----------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKL 334 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G-----------------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v 334 (715)
+.+|+|||+||||||||||||||||.| ++|+++.+||..+... ...|.|+|||+|||||+|
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i 171 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEEL 171 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEE
T ss_pred HHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeE
Confidence 999999999999999999999999975 5678999999988653 468999999999999999
Q ss_pred ecccCCc--cceeeEecC--CCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC
Q 005092 335 FDLLSDR--KKLCMREDG--KQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS 410 (715)
Q Consensus 335 ~DLL~~~--~~l~i~ed~--~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 410 (715)
+|||++. .++.+++|+ +++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.....+.
T Consensus 172 ~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 251 (373)
T 2wbe_C 172 CDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI 251 (373)
T ss_dssp EESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT
T ss_pred EECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC
Confidence 9999864 467888874 578999999999999999999999999999999999999999999999999998765433
Q ss_pred CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcce
Q 005092 411 ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSR 490 (715)
Q Consensus 411 ~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsr 490 (715)
........|+|+|||||||||..+++...+.+.+|+..||+||++|++||.||..+..|||||+||||+||||+|||||+
T Consensus 252 ~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnsk 331 (373)
T 2wbe_C 252 EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTK 331 (373)
T ss_dssp TTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSE
T ss_pred CCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCce
Confidence 33344568999999999999988877665777889999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCccc
Q 005092 491 TVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDI 530 (715)
Q Consensus 491 T~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~ 530 (715)
|+||+||||+..+++|||+||+||+|||+|++.|.++.+.
T Consensus 332 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 332 TSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 9999999999999999999999999999999999887653
No 12
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.9e-83 Score=684.92 Aligned_cols=310 Identities=35% Similarity=0.530 Sum_probs=284.1
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 272 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~ 272 (715)
..++|+|+|||||+++.|...+...++.+.+ +++.+ ..+.|.||+||+++++|++||+.+++|+|+
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-------------~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~ 71 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-------------ASKPYAFDRVFQSSTSQEQVYNDCAKKIVK 71 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE-------------TTEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE-------------CCEEEECCeEeCCCCCHHHHHHHHhhhhHH
Confidence 5688999999999999999888877776654 44433 236799999999999999999999999999
Q ss_pred HHhcCCCeEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC-cc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RK 342 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~ 342 (715)
.+++|||+||||||||||||||||.| +.|+++.+||..+........|.|+|||+|||||+|+|||++ +.
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 151 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT 151 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCC
T ss_pred HHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCC
Confidence 99999999999999999999999974 678999999999987667788999999999999999999985 56
Q ss_pred ceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEE
Q 005092 343 KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 422 (715)
Q Consensus 343 ~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 422 (715)
.+.+++|++++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+|+
T Consensus 152 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skl~ 228 (325)
T 1bg2_A 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT---EQKLSGKLY 228 (325)
T ss_dssp SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT---CCEEEEEEE
T ss_pred CceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC---CcEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999998865432 346789999
Q ss_pred EEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCC
Q 005092 423 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSG 502 (715)
Q Consensus 423 fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~ 502 (715)
|||||||||..+++.. +.+.+|+..||+||++|++||.||..++.||||||||||+||||+|||||+|+||+||||+..
T Consensus 229 lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~ 307 (325)
T 1bg2_A 229 LVDLAGSEKVSKTGAE-GAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSY 307 (325)
T ss_dssp EEECCCSCCCCCCSSS-CTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGG
T ss_pred EEECCCCCcccccCCc-cccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccc
Confidence 9999999998777654 456679999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhhcc
Q 005092 503 CCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 503 ~~eETLsTLrfA~Rak~i 520 (715)
+++||++||+||+|||+|
T Consensus 308 ~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 308 NESETKSTLLFGQRAKTI 325 (325)
T ss_dssp GHHHHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHHHHhccC
Confidence 999999999999999986
No 13
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=7e-82 Score=686.08 Aligned_cols=325 Identities=35% Similarity=0.503 Sum_probs=289.3
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 273 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~ 273 (715)
-.++|+|+||+||++..|...+...++... +.+++..+.. ....+.|.||+||+++++|++||+. ++|+|+.
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~v~~~~~------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~ 74 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRSV-DEFTVEHLWK------DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQS 74 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCCBCEEEC-SSSEEEEECT------TSCEEEEECSEEECTTCCHHHHHHT-TTHHHHH
T ss_pred CCCCeEEEEECCCCChhhccCCCcEEEEcC-CcEEEEecCC------CCCceEEecCEEECCCCCcceehhh-hhhhhHh
Confidence 357899999999999999887765444332 3333322211 1234789999999999999999999 7999999
Q ss_pred HhcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC----ccc
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD----RKK 343 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~----~~~ 343 (715)
+++|||+||||||||||||||||+ |+.|+++.+||..+........|.|+|||+|||||+|+|||++ +.+
T Consensus 75 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 154 (369)
T 3cob_A 75 AVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLK 154 (369)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCC
T ss_pred hhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcc
Confidence 999999999999999999999996 5789999999999987666678999999999999999999976 357
Q ss_pred eeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEE
Q 005092 344 LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 423 (715)
Q Consensus 344 l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~f 423 (715)
+.+++|++++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 155 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~skL~l 231 (369)
T 3cob_A 155 LDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ---TQAIARGKLSF 231 (369)
T ss_dssp CEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT---TCCEEEEEEEE
T ss_pred eEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC---CCcEEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999886543 23567899999
Q ss_pred EECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 424 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 424 VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
||||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+..+
T Consensus 232 VDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 310 (369)
T 3cob_A 232 VDLAGSERVKKSGSA-GNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN 310 (369)
T ss_dssp EECCCSSCCCCCSSC-SHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EeCCCCCcccccCcc-chhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCcccc
Confidence 999999998777655 4567799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhccccCCCCCccc
Q 005092 504 CEHTLNTLRYADRVKSLSKGNNPKKDI 530 (715)
Q Consensus 504 ~eETLsTLrfA~Rak~i~~~~~~~~~~ 530 (715)
++||++||+||+|||+|++.+.++.+.
T Consensus 311 ~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 311 LDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred HHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 999999999999999999999888765
No 14
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.3e-82 Score=691.46 Aligned_cols=324 Identities=35% Similarity=0.502 Sum_probs=280.4
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCC----eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhh
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSN----SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEP 269 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~----~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~p 269 (715)
..++|+|+||+||+++.|...+...++.+.++ .+.+ ..+.|.||+||+++++|++||+.+++|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-------------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p 75 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-------------AGKVYLFDKVFKPNASQEKVYNEAAKS 75 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-------------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-------------CCEEEeCceEecCCCCHHHHHHHhhhh
Confidence 56789999999999999998888777766442 2221 346899999999999999999999999
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc---------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCC
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK---------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD 340 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~---------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 340 (715)
+|+++|+|||+||||||||||||||||. |+.|+++.+||..+........|.|+|||+|||||+|+|||++
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 155 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDV 155 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccC
Confidence 9999999999999999999999999996 4678999999999987666778999999999999999999985
Q ss_pred -ccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEE
Q 005092 341 -RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVG 419 (715)
Q Consensus 341 -~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 419 (715)
+..+.+++|++++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....|
T Consensus 156 ~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~s 232 (365)
T 2y65_A 156 SKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN---QKKLSG 232 (365)
T ss_dssp TCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT---CCEEEE
T ss_pred CcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC---CCEeEE
Confidence 4579999999999999999999999999999999999999999999999999999999999998865432 346789
Q ss_pred EEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCcceeEEEEecC
Q 005092 420 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRTVMISCIS 498 (715)
Q Consensus 420 kL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~IS 498 (715)
+|+|||||||||..+++. .+.+.+|+..||+||++|++||.||..+ +.|||||+||||+||||+|||||+|+||+|||
T Consensus 233 kL~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~is 311 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGA-EGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCS 311 (365)
T ss_dssp EEEEEECCCCCC-----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEEC
T ss_pred EEEEEECCCCCcchhcCC-cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEec
Confidence 999999999999877654 4567779999999999999999999876 57999999999999999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHhhccccCCCCCccccccc
Q 005092 499 PSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSST 534 (715)
Q Consensus 499 P~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~ 534 (715)
|+..+++||++||+||+|||+|++.+.++.++....
T Consensus 312 P~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~ 347 (365)
T 2y65_A 312 PASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEE 347 (365)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHH
T ss_pred CccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHH
Confidence 999999999999999999999999988887665443
No 15
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=6.1e-82 Score=701.10 Aligned_cols=336 Identities=33% Similarity=0.481 Sum_probs=275.9
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEEcC--CeEEEecccccc-------cccccccceeEEeeeecCC-------C
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKV-------DLTEYVEKHEFVFDAVLNE-------E 256 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~k~-------~~~~~~~~~~F~FD~VF~~-------~ 256 (715)
...++|+|+|||||++++|...+..+++.+++ ..+++..|.... ......+.+.|+||+||++ .
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 36679999999999999999988888888765 355565443211 0112234689999999975 4
Q ss_pred CChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhh---ccCcceEEEEEEE
Q 005092 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHT---YRSQGFQLFVSFF 327 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~---~~~~~~~V~vS~~ 327 (715)
++|++||+.+++|+|+.+|+|||+||||||||||||||||+ |++++++.+||..+... .....|.|+|||+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 89999999999999999999999999999999999999996 47899999999999764 2356899999999
Q ss_pred EEeCceeecccCCc------cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEE
Q 005092 328 EIYGGKLFDLLSDR------KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQL 401 (715)
Q Consensus 328 EIYnE~v~DLL~~~------~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I 401 (715)
|||||+|+|||++. ..+.|+||+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 99999999999762 358999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC-------------
Q 005092 402 AIKRSADGS-ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ------------- 467 (715)
Q Consensus 402 ~v~~~~~~~-~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~------------- 467 (715)
+|.+..... ........|+|+|||||||||..+++. .+.+.+|+.+||+||++|++||.||..++
T Consensus 275 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~-~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEA-TGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEC-------CCEEEEEEEEEECCCCCC---------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEeecccCCCCcceEEEEEEEEECCCCccccccCC-ccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 998764321 122345789999999999999777654 45677799999999999999999997643
Q ss_pred ---------CCCcCCCCccccccccccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc-ccc
Q 005092 468 ---------GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK-DIL 531 (715)
Q Consensus 468 ---------~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~-~~~ 531 (715)
.||||||||||+||||+|||||+|+||+||||+ +++|||+||+||+|||+|++.+.++. +..
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~ 425 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGV 425 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC---
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCc
Confidence 389999999999999999999999999999997 59999999999999999999998877 443
No 16
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-82 Score=683.46 Aligned_cols=323 Identities=35% Similarity=0.496 Sum_probs=277.9
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEE--cCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIET--YSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~--~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
..++|+|+||+||++.+|...++..++.+ .++.+... ...+.|.||+||+++++|++||+.+++|+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-----------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv 70 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-----------DGSKSFNFDRVFHGNETTKNVYEEIAAPII 70 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-----------TSSCEEECSCEECTTSCHHHHHHHTTHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-----------CCCeEEECCEEECCCCCHHHHHHHHHHHHH
Confidence 35789999999999999987666554433 33333211 124689999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc---c
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR---K 342 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---~ 342 (715)
+.+|+|||+||||||||||||||||.| +.|+++.+||..+... ....|.|+|||+|||||+|+|||++. +
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 149 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKMK 149 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSCTTC
T ss_pred HHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCCCCC
Confidence 999999999999999999999999975 7899999999998753 35679999999999999999999764 5
Q ss_pred ceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCC--CCCCeeEEE
Q 005092 343 KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSE--SKPPRLVGK 420 (715)
Q Consensus 343 ~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~--~~~~~~~sk 420 (715)
++.+++|++++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|.|.+...... .......|+
T Consensus 150 ~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~sk 229 (349)
T 1t5c_A 150 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSH 229 (349)
T ss_dssp CEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEE
T ss_pred CceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999987654322 123457899
Q ss_pred EEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCCCCccccccccccCCcceeEEEEecC
Q 005092 421 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGNSRTVMISCIS 498 (715)
Q Consensus 421 L~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~--~hIPyRdSKLTrLLrdsLgGnsrT~mIa~IS 498 (715)
|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++ .|||||+||||+||||+|||||+|+||+|||
T Consensus 230 L~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~is 308 (349)
T 1t5c_A 230 LNLVDLAGSERAAQTGAA-GVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT 308 (349)
T ss_dssp EEEEECCCGGGTC--------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEEC
T ss_pred EEEEECCCCccccccCCc-cccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeC
Confidence 999999999998776554 4566799999999999999999998765 6999999999999999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHhhccccCCCCCcccc
Q 005092 499 PSSGCCEHTLNTLRYADRVKSLSKGNNPKKDIL 531 (715)
Q Consensus 499 P~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~ 531 (715)
|+ +++||++||+||+|||+|++.|.++.++.
T Consensus 309 P~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 309 PV--SFDETLTALQFASTAKYMKNTPYVNEVST 339 (349)
T ss_dssp TT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC-
T ss_pred CC--CHHHHHHHHHHHHHHhhcccCceeccCCC
Confidence 97 59999999999999999999998877653
No 17
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.1e-81 Score=682.20 Aligned_cols=324 Identities=35% Similarity=0.530 Sum_probs=260.7
Q ss_pred CCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccc-cccccceeEEeeeec--------CCCCChHHHHHHh
Q 005092 196 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDL-TEYVEKHEFVFDAVL--------NEEVSNDEVYRET 266 (715)
Q Consensus 196 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~-~~~~~~~~F~FD~VF--------~~~asQeeVy~~~ 266 (715)
.+|+|+|||||++++|...+..+++.++++.+.+..+...... ......+.|.||+|| ++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 4799999999999999998999999999888888765433221 122345789999999 5668999999999
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCceeecccC
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLS 339 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~ 339 (715)
++|+|+.+|+|||+||||||||||||||||+ |++|+++.+||..+.. ......|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999996 4789999999998875 33456799999999999999999998
Q ss_pred Cc---cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCC-CCCCCC
Q 005092 340 DR---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADG-SESKPP 415 (715)
Q Consensus 340 ~~---~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~-~~~~~~ 415 (715)
+. +.+.++|++..+++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 240 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence 63 57999999999999999999999999999999999999999999999999999999999999875322 222234
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC------CCCCCcCCCCccccccccccCCcc
Q 005092 416 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------DQGHIPFRGSKLTEVLRDSFVGNS 489 (715)
Q Consensus 416 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~------~~~hIPyRdSKLTrLLrdsLgGns 489 (715)
...|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.. +..||||||||||+||||+|||||
T Consensus 241 ~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSERATKTGAA-GDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEECCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred eeEEEEEEEECCCCCchhhcCCc-cccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 57899999999999998777654 45667999999999999999999974 457999999999999999999999
Q ss_pred eeEEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005092 490 RTVMISCISPSSGCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 490 rT~mIa~ISP~~~~~eETLsTLrfA~Rak~i 520 (715)
+|+||+||||+..+++|||+|||||+||+.-
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999863
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.2e-81 Score=671.15 Aligned_cols=314 Identities=36% Similarity=0.539 Sum_probs=268.3
Q ss_pred CCCCeEEEEEeCCCCchhhhcCC-CceEEEcC--Ce-EEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhh
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNE-EDIIETYS--NS-LTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEP 269 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~-~~~i~~~~--~~-v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~p 269 (715)
..++|+|+|||||+++.|..... ..++.++. +. +.+.. ....+.|.||+||+++++|++||+. ++|
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~ 71 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH---------KGKPVSFELDKVFSPQASQQDVFQE-VQA 71 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE---------TTEEEEEECSEEECTTCCHHHHHTT-THH
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC---------CCCeeEEecCeEeCCCCCcHhHHHH-HHH
Confidence 45789999999999999865432 34455532 22 22221 1245789999999999999999998 589
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccCCc--
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR-- 341 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~-- 341 (715)
+|+.+++|||+||||||||||||||||+| +.|+++.+||..+........|.|+|||+|||||+|+|||++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 151 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ 151 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc
Confidence 99999999999999999999999999975 7799999999999876666789999999999999999999754
Q ss_pred cce--eeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEE
Q 005092 342 KKL--CMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVG 419 (715)
Q Consensus 342 ~~l--~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 419 (715)
.++ .+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ......|
T Consensus 152 ~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~s 228 (330)
T 2h58_A 152 EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS---TGLRTTG 228 (330)
T ss_dssp CCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT---TTEEEEE
T ss_pred ccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC---CCcEEEE
Confidence 334 45568899999999999999999999999999999999999999999999999999999876432 2346789
Q ss_pred EEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCC
Q 005092 420 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISP 499 (715)
Q Consensus 420 kL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP 499 (715)
+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||
T Consensus 229 kL~lVDLAGSEr~~~t~~~-g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP 307 (330)
T 2h58_A 229 KLNLVDLAGSERVGKSGAE-GSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSP 307 (330)
T ss_dssp EEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECC
T ss_pred EEEEEeCCCCCcccccCCc-hhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCC
Confidence 9999999999998776554 566779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHhhccc
Q 005092 500 SSGCCEHTLNTLRYADRVKSLS 521 (715)
Q Consensus 500 ~~~~~eETLsTLrfA~Rak~i~ 521 (715)
+..+++||++||+||+|||+|+
T Consensus 308 ~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 308 VEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp BGGGHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999985
No 19
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.8e-81 Score=676.18 Aligned_cols=311 Identities=38% Similarity=0.611 Sum_probs=260.8
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCC--eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSN--SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 271 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~--~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV 271 (715)
..++|+|+|||||++.+|...+...++.+.++ .+.+. ..+.|.||+||+++++|++||+.+++|+|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~------------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv 76 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG------------RDRHFGFHVVLAEDAGQEAVYQACVQPLL 76 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET------------TTEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec------------ccceEEEEEEEecCcchhHHHHHHHHHHH
Confidence 56889999999999999998888777776543 33321 34689999999999999999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCCccccc------------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccC
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTMK------------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS 339 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM~------------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 339 (715)
+++|+|||+||||||||||||||||. |+.|+++.+||..+... ....|.|+|||+|||||+|+|||+
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 155 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLE 155 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTS
T ss_pred HHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHH
Confidence 99999999999999999999999995 56789999999999764 456899999999999999999997
Q ss_pred C---ccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC-----C
Q 005092 340 D---RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS-----E 411 (715)
Q Consensus 340 ~---~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-----~ 411 (715)
+ .+.+.+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 156 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 235 (344)
T 4a14_A 156 VGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRP 235 (344)
T ss_dssp SCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC---------
T ss_pred hccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCc
Confidence 4 4679999999999999999999999999999999999999999999999999999999999998764221 1
Q ss_pred CCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC---CCCCcCCCCccccccccccCCc
Q 005092 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND---QGHIPFRGSKLTEVLRDSFVGN 488 (715)
Q Consensus 412 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~---~~hIPyRdSKLTrLLrdsLgGn 488 (715)
.......|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.++ ..||||||||||+||||+||||
T Consensus 236 ~~~~~~~skl~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGn 314 (344)
T 4a14_A 236 APGQLLVSKFHFVDLAGSERVLKTGST-GERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGN 314 (344)
T ss_dssp ---CEEEEEEEEEECCCCCCC---------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTT
T ss_pred cccceeeeeeeEEecccchhhcccCCc-hhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCC
Confidence 223457899999999999998776654 456679999999999999999999864 3699999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhh
Q 005092 489 SRTVMISCISPSSGCCEHTLNTLRYADRVK 518 (715)
Q Consensus 489 srT~mIa~ISP~~~~~eETLsTLrfA~Rak 518 (715)
|+|+||+||||+..+++||++||+||+|||
T Consensus 315 skt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999996
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.7e-81 Score=680.46 Aligned_cols=323 Identities=30% Similarity=0.428 Sum_probs=248.9
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEE--------EcCCeEEEeccccc----ccccccccceeEEeeeecCCCCChHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIE--------TYSNSLTVHETKLK----VDLTEYVEKHEFVFDAVLNEEVSNDE 261 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~--------~~~~~v~v~~~~~k----~~~~~~~~~~~F~FD~VF~~~asQee 261 (715)
..++|+|+|||||+++.|...+...++. .++..+++..+... .........+.|.||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 5688999999999999997765432221 12345555432110 01112234578999999999999999
Q ss_pred HHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC----------CChhhHHHHHHHHhhh-ccCcceEEEEEEEEEe
Q 005092 262 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP----------LPLKASRDILRLMHHT-YRSQGFQLFVSFFEIY 330 (715)
Q Consensus 262 Vy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G----------l~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIY 330 (715)
||+. +.|+|+.+|+|||+||||||||||||||||.| ++|+++.+||..+... .....|.|+|||+|||
T Consensus 100 Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 9998 46899999999999999999999999999975 6789999999998763 3456899999999999
Q ss_pred CceeecccCCc------cceeeEec--CCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEE
Q 005092 331 GGKLFDLLSDR------KKLCMRED--GKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLA 402 (715)
Q Consensus 331 nE~v~DLL~~~------~~l~i~ed--~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~ 402 (715)
||+|+|||++. .++.++++ +.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 99999999763 46788988 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCeeEEEEEEEECCCCCCCCCCCCch---hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcccc
Q 005092 403 IKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDND---KQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTE 479 (715)
Q Consensus 403 v~~~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~~---~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTr 479 (715)
|.+..... .....|+|+|||||||||..++...+ +.+++|+..||+||++|++||.||.+++.|||||+||||+
T Consensus 259 v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~ 335 (376)
T 2rep_A 259 ISGEHSSR---GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTY 335 (376)
T ss_dssp EEEEESSS---CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGSHHHH
T ss_pred EEEEecCC---CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHH
Confidence 98765432 34568999999999999987765543 2677899999999999999999999999999999999999
Q ss_pred ccccccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005092 480 VLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 480 LLrdsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i 520 (715)
||||+|||||+|+||+||||+..+++|||+||+||+|++++
T Consensus 336 LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 336 LLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999863
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=7.3e-80 Score=667.06 Aligned_cols=319 Identities=34% Similarity=0.486 Sum_probs=255.8
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCceEEEcC-----CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhh
Q 005092 195 VAKIKVVVRKRPLNKKELAKNEEDIIETYS-----NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEP 269 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-----~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~p 269 (715)
.++|||+|||||+++.|...+...++.... ..+++..+. .....+.|.||+||+++++|++||+. +.|
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~ 76 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE------GRILSYNFQFDMIFEPSHTNKEIFEE-IRQ 76 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--------CEEEEEEESEEECTTCCHHHHHHH-HHH
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCC------CcccceeeecCEEECCCccHHHHHHH-HHH
Confidence 578999999999999997765444443211 133343221 11235789999999999999999998 579
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc----CCChhhHHHHHHHHhhh-ccCcceEEEEEEEEEeCceeecccCCc---
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK----PLPLKASRDILRLMHHT-YRSQGFQLFVSFFEIYGGKLFDLLSDR--- 341 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~----Gl~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIYnE~v~DLL~~~--- 341 (715)
+|+++|+|||+||||||||||||||||. |+.|+++.+||..+... ...+.|.|+|||+|||||+|+|||++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSH 156 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccc
Confidence 9999999999999999999999999995 68899999999998873 345689999999999999999999753
Q ss_pred ---------cceeeEecC-CCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCC
Q 005092 342 ---------KKLCMREDG-KQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSE 411 (715)
Q Consensus 342 ---------~~l~i~ed~-~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 411 (715)
.++.+++++ +++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~- 235 (349)
T 3t0q_A 157 DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT- 235 (349)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT-
T ss_pred cccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC-
Confidence 456777775 457999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC---CCCcCCCCccccccccccCCc
Q 005092 412 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGN 488 (715)
Q Consensus 412 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgGn 488 (715)
.....|+|+|||||||||..++... +.+.+|+..||+||++|++||.||..++ .|||||+||||+||||+||||
T Consensus 236 --~~~~~~kL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGn 312 (349)
T 3t0q_A 236 --GETSQGKLNLVDLAGSERINSSAVT-GERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGD 312 (349)
T ss_dssp --CCEEEEEEEEEECCCCCCCC----C-CHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTT
T ss_pred --CCeeEEEEEEEeCCCCCccccccCc-cccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 3457899999999999998776654 4567799999999999999999998765 499999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCC
Q 005092 489 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGN 524 (715)
Q Consensus 489 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~ 524 (715)
|+|+||+||||+..+++|||+||+||+|+++++.++
T Consensus 313 skt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 313 SKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp CEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999997653
No 22
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=5.6e-80 Score=667.23 Aligned_cols=317 Identities=34% Similarity=0.490 Sum_probs=259.5
Q ss_pred CCCeEEEEEeCCCCc-hhhhcCCCceEEEcC-------CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHh
Q 005092 195 VAKIKVVVRKRPLNK-KELAKNEEDIIETYS-------NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRET 266 (715)
Q Consensus 195 ~~~IkV~VRvRPl~~-~E~~~~~~~~i~~~~-------~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~ 266 (715)
.++|+|+|||||+++ .|. ....++.+.. ..+.+..+. .....+.|.||+||+++++|++||+.
T Consensus 2 k~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~Vy~~- 72 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQ------NTAQVHEFKFDKIFDQQDTNVDVFKE- 72 (347)
T ss_dssp -CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGG------GTTCEEEEEESEEECTTCCHHHHHHH-
T ss_pred CCCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCC------CCcCceEEeeCEEECCCCCHHHHHHH-
Confidence 478999999999987 442 2333444321 134443321 11245789999999999999999998
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc----CCChhhHHHHHHHHhhh-ccCcceEEEEEEEEEeCceeecccCCc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK----PLPLKASRDILRLMHHT-YRSQGFQLFVSFFEIYGGKLFDLLSDR 341 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~----Gl~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIYnE~v~DLL~~~ 341 (715)
+.|+|+.+|+|||+||||||||||||||||+ |+.|+++.+||..+... .....|.|+|||+|||||+|+|||++.
T Consensus 73 v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 152 (347)
T 1f9v_A 73 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSD 152 (347)
T ss_dssp HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--
T ss_pred HHHHHHHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCc
Confidence 5799999999999999999999999999996 68899999999999863 345689999999999999999999764
Q ss_pred c----------ceeeEecC-CCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC
Q 005092 342 K----------KLCMREDG-KQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS 410 (715)
Q Consensus 342 ~----------~l~i~ed~-~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 410 (715)
. ++.+++++ .++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 153 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~- 231 (347)
T 1f9v_A 153 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK- 231 (347)
T ss_dssp -----------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--
T ss_pred cccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC-
Confidence 3 46787764 57899999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCC---CCCcCCCCccccccccccCC
Q 005092 411 ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVG 487 (715)
Q Consensus 411 ~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgG 487 (715)
......|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++ .||||||||||+||||+|||
T Consensus 232 --~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgG 308 (347)
T 1f9v_A 232 --TGAHSYGTLNLVDLAGSERINVSQVV-GDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTG 308 (347)
T ss_dssp ---CCEEEEEEEEEECCCCCCCCGGGCC-HHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHST
T ss_pred --CCceeeeEEEEEECCCCccccccccc-hhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCC
Confidence 23457899999999999998766554 5667799999999999999999998876 89999999999999999999
Q ss_pred cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCC
Q 005092 488 NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGN 524 (715)
Q Consensus 488 nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~ 524 (715)
||+|+||+||||+..+++|||+||+||+|+++|+.++
T Consensus 309 nskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 309 DSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp TCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred CccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999998765
No 23
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3.8e-79 Score=673.15 Aligned_cols=324 Identities=30% Similarity=0.451 Sum_probs=264.4
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 273 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~plV~~ 273 (715)
..++|+|+|||||++..|.......+...++.++.+..+.... ......+.|.||+||+++++|++||+. +.|+|+.
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~ 133 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQA--KSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQS 133 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC---------CCCEEECSEEECTTCCHHHHHTT-THHHHHH
T ss_pred hCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCccc--ccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHH
Confidence 4689999999999999996654333333355676665433221 111235789999999999999999985 6799999
Q ss_pred HhcCCCeEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhh-ccCcceEEEEEEEEEeCceeecccCCcc-c--
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHT-YRSQGFQLFVSFFEIYGGKLFDLLSDRK-K-- 343 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIYnE~v~DLL~~~~-~-- 343 (715)
+|+|||+||||||||||||||||. |++|+++.+||..+... ...+.|.|+|||+|||||+|+|||++.. .
T Consensus 134 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (412)
T 3u06_A 134 ALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME 213 (412)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCC
T ss_pred HHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCce
Confidence 999999999999999999999996 57899999999998763 3467899999999999999999997643 3
Q ss_pred eeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEE
Q 005092 344 LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 423 (715)
Q Consensus 344 l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~f 423 (715)
+.+.++++++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 214 i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~~kL~l 290 (412)
T 3u06_A 214 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE---KQEISVGSINL 290 (412)
T ss_dssp EEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT---TTEEEEEEEEE
T ss_pred eeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC---CCCEEEEEEEE
Confidence 555678899999999999999999999999999999999999999999999999999999876433 23467899999
Q ss_pred EECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005092 424 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 503 (715)
Q Consensus 424 VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 503 (715)
||||||||... +.+.+|+.+||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+..+
T Consensus 291 VDLAGSEr~~~-----~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~ 365 (412)
T 3u06_A 291 VDLAGSESPKT-----STRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDC 365 (412)
T ss_dssp EECCCCCC---------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGG
T ss_pred EECCCCCcCCc-----cchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhh
Confidence 99999999642 3467799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhccccCCCCCc
Q 005092 504 CEHTLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 504 ~eETLsTLrfA~Rak~i~~~~~~~~ 528 (715)
++||++||+||+|+++++.++..+.
T Consensus 366 ~~ETl~TLrfA~rv~~i~~~~~~~n 390 (412)
T 3u06_A 366 FQESVKSLRFAASVNSCKMTKAKRN 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999987654443
No 24
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-79 Score=665.12 Aligned_cols=318 Identities=32% Similarity=0.469 Sum_probs=254.0
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEE--cCCeEEEeccccc--ccccccccceeEEeeeecCCCCChHHHHHHhhh
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIET--YSNSLTVHETKLK--VDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVE 268 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~--~~~~v~v~~~~~k--~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~ 268 (715)
...++|||+|||||++..|. .++.. +...+.++.++.. .........+.|.||+||+ +++|++||+.+++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ---CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCEEEEEEcCCCCcccc-----cceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 35688999999999976553 23333 2356666655422 1123334567899999997 5899999999999
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccC
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS 339 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 339 (715)
|+|+.+|+|||+||||||||||||||||+| +.|+++.+||+.+... ....|.|+|||+|||||+|+|||+
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcC-CCCcEEEEEEEEEEeccccccccc
Confidence 999999999999999999999999999974 6789999999988753 456899999999999999999997
Q ss_pred Cc-------cceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCC
Q 005092 340 DR-------KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSES 412 (715)
Q Consensus 340 ~~-------~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~ 412 (715)
+. ..+.+++++. +++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|........
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~- 251 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS- 251 (359)
T ss_dssp SSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccccc-
Confidence 52 3466777764 69999999999999999999999999999999999999999999999999987543222
Q ss_pred CCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCccee
Q 005092 413 KPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRT 491 (715)
Q Consensus 413 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT 491 (715)
......|+|+|||||||||..+++. .+.+.+|+..||+||++|++||.||.++ +.|||||+||||+||||+|||||+|
T Consensus 252 ~~~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt 330 (359)
T 3nwn_A 252 EEKYITSKINLVDLAGSERLGKSGS-EGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 330 (359)
T ss_dssp --CCEEEEEEEEECCCCC-----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CcccccccceeeeccccccccccCC-chhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccE
Confidence 2345689999999999999766654 4567779999999999999999999864 5799999999999999999999999
Q ss_pred EEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005092 492 VMISCISPSSGCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 492 ~mIa~ISP~~~~~eETLsTLrfA~Rak~i 520 (715)
+||+||||+..+++|||+||+||+|||+|
T Consensus 331 ~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 331 VLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999986
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-78 Score=666.45 Aligned_cols=319 Identities=34% Similarity=0.491 Sum_probs=262.6
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEc---C--C--eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHh
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETY---S--N--SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRET 266 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~---~--~--~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~ 266 (715)
-.++|+|+|||||+.+.+.... ..++.+. + . .+.+... ......+.|.||+||+++++|++||+.
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~-~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~F~FD~VF~~~~~Q~~Vf~~- 128 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSD-TSLINVNEFDDNSGVQSMEVTKI------QNTAQVHEFKFDKIFDQQDTNVDVFKE- 128 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSC-CTTEEECCCBTTTTBEEEEEEEC------SSSCEEEEEEESEEECTTCCHHHHHHH-
T ss_pred cCCCeEEEEEeCCCCCcccccC-CCeeEEeeccCCCCceEEEEecC------CCCcCceEEEcCEEECCCCchHHHHHH-
Confidence 4589999999999987632222 2333332 1 1 2222211 122245789999999999999999998
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc----CCChhhHHHHHHHHhhh-ccCcceEEEEEEEEEeCceeecccCCc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK----PLPLKASRDILRLMHHT-YRSQGFQLFVSFFEIYGGKLFDLLSDR 341 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~----Gl~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIYnE~v~DLL~~~ 341 (715)
+.|+|+++|+|||+||||||||||||||||+ |+.|+++.+||..+... ...+.|.|+|||+|||||+|+|||++.
T Consensus 129 v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 208 (403)
T 4etp_A 129 VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSD 208 (403)
T ss_dssp HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-
T ss_pred HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCc
Confidence 5689999999999999999999999999995 68899999999999873 345789999999999999999999754
Q ss_pred c----------ceeeEecC-CCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC
Q 005092 342 K----------KLCMREDG-KQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS 410 (715)
Q Consensus 342 ~----------~l~i~ed~-~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 410 (715)
. ++.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 209 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 288 (403)
T 4etp_A 209 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 288 (403)
T ss_dssp -------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT
T ss_pred cccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC
Confidence 2 46677765 467999999999999999999999999999999999999999999999999998764332
Q ss_pred CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCC---CCcCCCCccccccccccCC
Q 005092 411 ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG---HIPFRGSKLTEVLRDSFVG 487 (715)
Q Consensus 411 ~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~---hIPyRdSKLTrLLrdsLgG 487 (715)
.....|+|+|||||||||..+++.. +.+.+|+..||+||++||+||.||..++. |||||+||||+||||+|||
T Consensus 289 ---~~~~~~kL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgG 364 (403)
T 4etp_A 289 ---GAHSYGTLNLVDLAGSERINVSQVV-GDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTG 364 (403)
T ss_dssp ---CCEEEEEEEEEECCCCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTST
T ss_pred ---CCeeEEEEEEEECCCCccccccCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCC
Confidence 3457899999999999997666554 56677999999999999999999987654 9999999999999999999
Q ss_pred cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCC
Q 005092 488 NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGN 524 (715)
Q Consensus 488 nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~ 524 (715)
||+|+||+||||+..+++|||+||+||+|+++++.++
T Consensus 365 nskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 365 DSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp TCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999998765
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.6e-78 Score=657.81 Aligned_cols=318 Identities=32% Similarity=0.480 Sum_probs=256.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCceEEE--cCCeEEEeccccccc--ccccccceeEEeeeecCCCCChHHHHHHhhh
Q 005092 193 SSVAKIKVVVRKRPLNKKELAKNEEDIIET--YSNSLTVHETKLKVD--LTEYVEKHEFVFDAVLNEEVSNDEVYRETVE 268 (715)
Q Consensus 193 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~--~~~~v~v~~~~~k~~--~~~~~~~~~F~FD~VF~~~asQeeVy~~~~~ 268 (715)
+..++|||+|||||+.+.+ .+++.+ ++.++.++.++.... .......+.|.||+||+ +++|++||+.+++
T Consensus 20 ~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~ 93 (358)
T 2nr8_A 20 GTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 93 (358)
T ss_dssp ---CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHH
Confidence 3678999999999986532 345555 346777776543211 12223457899999995 7899999999999
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCccccc---------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCceeecccC
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMK---------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLS 339 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~---------Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 339 (715)
|+|+.+|+|||+||||||||||||||||+ |+.|+++.+||..+... ....|.|+|||+|||||+|+|||+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc-CCceEEEEEEEEEEeCCeeeECcC
Confidence 99999999999999999999999999995 46789999999999763 456799999999999999999997
Q ss_pred C-------ccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCC
Q 005092 340 D-------RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSES 412 (715)
Q Consensus 340 ~-------~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~ 412 (715)
+ ..++.+++++ .+++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 173 ~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~-~ 250 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL-S 250 (358)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred CccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC-C
Confidence 5 3568999998 67999999999999999999999999999999999999999999999999998754322 1
Q ss_pred CCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCccee
Q 005092 413 KPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRT 491 (715)
Q Consensus 413 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT 491 (715)
......|+|+|||||||||..+++. .+++.+|+.+||+||++|++||.||.++ +.||||||||||+||||+|||||+|
T Consensus 251 ~~~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt 329 (358)
T 2nr8_A 251 EEKYITSKINLVDLAGSERLGKSGS-EGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 329 (358)
T ss_dssp --CCEEEEEEEEECCCCC-----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CCCEEEEEEEEEECCCCCcccccCC-chhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeE
Confidence 2344689999999999999777654 5567789999999999999999999875 4699999999999999999999999
Q ss_pred EEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005092 492 VMISCISPSSGCCEHTLNTLRYADRVKSL 520 (715)
Q Consensus 492 ~mIa~ISP~~~~~eETLsTLrfA~Rak~i 520 (715)
+||+||||+..+++|||+||+||+|||+|
T Consensus 330 ~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 330 VLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=4.3e-78 Score=651.21 Aligned_cols=304 Identities=30% Similarity=0.489 Sum_probs=241.1
Q ss_pred CCCCCCCeEEEEEeCCCCchhhhcCCCceEEEcC----CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHh
Q 005092 191 NASSVAKIKVVVRKRPLNKKELAKNEEDIIETYS----NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRET 266 (715)
Q Consensus 191 ~~~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~----~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~ 266 (715)
+....++|||+|||||+++.|. .++..++...+ ..+. .+.+.|.||+||+++++|++||+.+
T Consensus 17 ~~~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~-------------~~~~~F~FD~Vf~~~~sQ~~Vy~~~ 82 (344)
T 3dc4_A 17 EGAKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLI-------------VDQNEFHFDHAFPATISQDEMYQAL 82 (344)
T ss_dssp --CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEE-------------ETTEEEECSEEECTTCCHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEE-------------ecCcEEEcceEECCCCCHHHHHHhh
Confidence 3346788999999999998773 34555665532 1222 1357899999999999999999999
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc------------CCChhhHHHHHHHHhhhcc--CcceEEEEEEEEEeCc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------------PLPLKASRDILRLMHHTYR--SQGFQLFVSFFEIYGG 332 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~------------Gl~~~a~~~If~~i~~~~~--~~~~~V~vS~~EIYnE 332 (715)
++|+|+.+|+|||+||||||||||||||||. |++|+++.+||..+..... ...|.|+|||+|||||
T Consensus 83 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE 162 (344)
T 3dc4_A 83 ILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162 (344)
T ss_dssp THHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESS
T ss_pred ccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCC
Confidence 9999999999999999999999999999995 6789999999999876433 3469999999999999
Q ss_pred eeecccCCccceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCC
Q 005092 333 KLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSES 412 (715)
Q Consensus 333 ~v~DLL~~~~~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~ 412 (715)
+|+|||++.....+... .+.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 163 ~i~DLL~~~~~~~~~~~-----~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------ 231 (344)
T 3dc4_A 163 KPFDLLGSTPHMPMVAA-----RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------ 231 (344)
T ss_dssp CEEETTSSCTTSBCCSS-----TTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------
T ss_pred eeEEccCCCCCCccccc-----cccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------
Confidence 99999987654433222 2348899999999999999999999999999999999999999999999742
Q ss_pred CCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeE
Q 005092 413 KPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTV 492 (715)
Q Consensus 413 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~ 492 (715)
...|+|+|||||||||..+++ ..+.+++|+.+||+||++|++||.||..++.|||||+||||+||||+|||||+|+
T Consensus 232 ---~~~skl~lVDLAGSEr~~~t~-~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~ 307 (344)
T 3dc4_A 232 ---THHSRMNIVDLAGSEGVRRTG-HEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLT 307 (344)
T ss_dssp ---SCEEEEEEEECCCCCCC--------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEE
T ss_pred ---CcEEEEEEEECCCCccccccc-cccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEE
Confidence 357999999999999977665 4566778999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChHhHHHHHHHHHHhhccccC
Q 005092 493 MISCISPSSGCCEHTLNTLRYADRVKSLSKG 523 (715)
Q Consensus 493 mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~ 523 (715)
||+||||+..+++|||+||+||+||+.....
T Consensus 308 mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~ 338 (344)
T 3dc4_A 308 FLACISPHQCDLSETLSTLRFGTSAKAAALE 338 (344)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999998643
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.9e-72 Score=661.08 Aligned_cols=319 Identities=30% Similarity=0.463 Sum_probs=249.5
Q ss_pred CCCCCeEEEEEeC----CCCchhhhcCCCce-EEE-------cCCeEEEecccccccccccccceeEEeeeecCCCCChH
Q 005092 193 SSVAKIKVVVRKR----PLNKKELAKNEEDI-IET-------YSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSND 260 (715)
Q Consensus 193 ~~~~~IkV~VRvR----Pl~~~E~~~~~~~~-i~~-------~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQe 260 (715)
.-..+++|||||| |....|...++..+ +.. ..+.+++..+. .+...++.|+||+||+++++|+
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~f~fd~vf~~~~~q~ 445 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-----NNNFSNLRFLFDKIFEREQSND 445 (715)
T ss_dssp SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-----TTEEEEEEEECSEEECSSCCHH
T ss_pred HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-----CCCCCCeEEEeceEeCCCCCHH
Confidence 4678999999999 54445544443322 221 12455554322 2334678999999999999999
Q ss_pred HHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc----CCChhhHHHHHHHHhhh-ccCcceEEEEEEEEEeCceee
Q 005092 261 EVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK----PLPLKASRDILRLMHHT-YRSQGFQLFVSFFEIYGGKLF 335 (715)
Q Consensus 261 eVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~----Gl~~~a~~~If~~i~~~-~~~~~~~V~vS~~EIYnE~v~ 335 (715)
+||+. +.|+|+++|+|||+||||||||||||||||. |++++++.+||..+... .+...|.|+|||+|||||+|+
T Consensus 446 ~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~ 524 (715)
T 4h1g_A 446 LVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIV 524 (715)
T ss_dssp HHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEE
T ss_pred HHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEE
Confidence 99986 5699999999999999999999999999996 58899999999999863 345679999999999999999
Q ss_pred cccCCc----cceeeEec-CCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCC
Q 005092 336 DLLSDR----KKLCMRED-GKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS 410 (715)
Q Consensus 336 DLL~~~----~~l~i~ed-~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 410 (715)
|||++. .++.++++ ..++++|.||+++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 525 DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~ 604 (715)
T 4h1g_A 525 DLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT 604 (715)
T ss_dssp ESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTT
T ss_pred ECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC
Confidence 999753 45666665 4567999999999999999999999999999999999999999999999999998764432
Q ss_pred CCCCCeeEEEEEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhC-CCCCCcCCCCccccccccccCCcc
Q 005092 411 ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN-DQGHIPFRGSKLTEVLRDSFVGNS 489 (715)
Q Consensus 411 ~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~-~~~hIPyRdSKLTrLLrdsLgGns 489 (715)
.....|+|+|||||||||..++.. .+.+++|+..||+||++|++||++|.. +..|||||+|||||||||+|||||
T Consensus 605 ---~~~~~~~l~lvDLAGsEr~~~~~~-~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~ 680 (715)
T 4h1g_A 605 ---KESSYGTLNLIDLAGSERLNNSRA-EGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNS 680 (715)
T ss_dssp ---CCEEEEEEEEEECCCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTC
T ss_pred ---CCEeEEEEEEEeCCCcccccccCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCc
Confidence 346789999999999999776654 456778999999999999999999974 568999999999999999999999
Q ss_pred eeEEEEecCCCCCChHhHHHHHHHHHHhhccc
Q 005092 490 RTVMISCISPSSGCCEHTLNTLRYADRVKSLS 521 (715)
Q Consensus 490 rT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~ 521 (715)
+|+||+||||+..+++|||+||+||+|||+|+
T Consensus 681 ~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 681 KTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred eEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999986
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=9e-28 Score=214.75 Aligned_cols=87 Identities=37% Similarity=0.554 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCC
Q 005092 447 AEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNN 525 (715)
Q Consensus 447 ~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~ 525 (715)
..||+||++||+||.||..+ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|+|++.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 36999999999999999877 68999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccccc
Q 005092 526 PKKDILSS 533 (715)
Q Consensus 526 ~~~~~~~~ 533 (715)
++.+....
T Consensus 82 ~n~~~~~~ 89 (100)
T 2kin_B 82 VNLELTAE 89 (100)
T ss_dssp CEEECCHH
T ss_pred eccCCCHH
Confidence 77665443
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.90 E-value=3.4e-25 Score=204.04 Aligned_cols=82 Identities=38% Similarity=0.563 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhCC-CCCCcCCCCccccccccccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc
Q 005092 450 NKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK 528 (715)
Q Consensus 450 NkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~ 528 (715)
|+||++||+||.||..+ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|++.+.++.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 79999999999999877 47999999999999999999999999999999999999999999999999999998877765
Q ss_pred ccc
Q 005092 529 DIL 531 (715)
Q Consensus 529 ~~~ 531 (715)
+..
T Consensus 81 ~~~ 83 (117)
T 3kin_B 81 ELT 83 (117)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.8e-24 Score=218.61 Aligned_cols=262 Identities=11% Similarity=0.128 Sum_probs=175.9
Q ss_pred CCCeEEEEEeCCCC-chhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChH--HHHHHhhhhhH
Q 005092 195 VAKIKVVVRKRPLN-KKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSND--EVYRETVEPIV 271 (715)
Q Consensus 195 ~~~IkV~VRvRPl~-~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~asQe--eVy~~~~~plV 271 (715)
.|+|||+||+||.. + ..+.+...+..+++ .. ..+.|.||+||++.++|+ +||++ +.++|
T Consensus 23 KGnIRVFcrvrp~~~p------~~~~v~y~~~~I~v-~~----------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i 84 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLP------ENLLFDYENGVITQ-GL----------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYH 84 (298)
T ss_dssp HTCCEEEEEECGGGSC------TTEEEETTTTEEEE-TT----------TCCEEECSEEEETTTSCHHHHHHHT-THHHH
T ss_pred hCceEEEEEeccccCC------ccceeecCccceee-cC----------CCceEEeeeEECccccccHHHHHHH-HHHHH
Confidence 48999999999953 2 22335555555444 11 227899999999999999 99998 99999
Q ss_pred HHHhc-CCCeEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEEe-CceeecccCCc---cceee
Q 005092 272 PIIFQ-RTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIY-GGKLFDLLSDR---KKLCM 346 (715)
Q Consensus 272 ~~vl~-G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~~~~~~~~V~vS~~EIY-nE~v~DLL~~~---~~l~i 346 (715)
+.+++ |||+||||||||||||| ++++..+|......+. +.|.+++||+||| ||.++|||... .++.|
T Consensus 85 ~scLd~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eI 156 (298)
T 2o0a_A 85 DMCLNQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSI 156 (298)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------C
T ss_pred HHHHhCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceE
Confidence 99999 99999999999999999 7888888877654233 7899999999999 99999999632 25688
Q ss_pred EecCCCcEEEeccEEEEeCC-HHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEE
Q 005092 347 REDGKQQVCIVGLQEYKVSD-VETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 425 (715)
Q Consensus 347 ~ed~~~~v~v~gLte~~V~s-~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 425 (715)
+.+.++.+.+.|++.+.|.+ ++|+..++..+... ..|. +.-.|+.+.+.......+.......--+.|+.
T Consensus 157 k~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e 227 (298)
T 2o0a_A 157 KLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIE 227 (298)
T ss_dssp EEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEE
T ss_pred EecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCceEEEEEE
Confidence 88889999999999999999 89888777322211 1221 23456666665421111111111223577886
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCCCCChH
Q 005092 426 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCE 505 (715)
Q Consensus 426 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~e 505 (715)
+.... +...|.+ ++..+ -+-.|+++-+|+--|. ..+.+++.++..+.
T Consensus 228 ~~~~~---------------------~~~~l~~---~~~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~---- 274 (298)
T 2o0a_A 228 LNNLK---------------------SIEQFDK---SIFKK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSK---- 274 (298)
T ss_dssp ECSHH---------------------HHHHHHH---HHHTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----
T ss_pred eCCHH---------------------HHHHHHh---hcccc----cccCCcHHHHHHHHHh-cCcceEEEEecCCC----
Confidence 54211 1111222 33333 3446888888876654 56889999997543
Q ss_pred hHHHHHHHHHHhhccccCC
Q 005092 506 HTLNTLRYADRVKSLSKGN 524 (715)
Q Consensus 506 ETLsTLrfA~Rak~i~~~~ 524 (715)
+.-.-|..++++..+.+..
T Consensus 275 ~~~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 275 NVNKLLTISEEVQTQLCKR 293 (298)
T ss_dssp GHHHHHHHHHHHHHHTC--
T ss_pred chhHHHHHHHHhhcccCcc
Confidence 3334889999998886543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.73 E-value=0.022 Score=54.27 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=36.1
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.++||........|+++++. +..+++++--.....++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 35788766655568888865 5666665443334567889999999999884
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.19 E-value=0.077 Score=51.15 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=33.6
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM~ 297 (715)
.++||........+..+++. +..++...-.+. +..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 45777766554456667764 445555433332 2678999999999999873
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.71 E-value=0.12 Score=54.33 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=33.0
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++||.+......+..++. .+..+++..-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 567665443334555665 35556655433335678899999999999984
No 35
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.64 E-value=5.4 Score=42.13 Aligned_cols=254 Identities=12% Similarity=0.166 Sum_probs=132.0
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCceEEEcCCeEEEecccccccccccccceeEEeeeecCCCC-ChHHHHHHhhhhhHH
Q 005092 194 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV-SNDEVYRETVEPIVP 272 (715)
Q Consensus 194 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~k~~~~~~~~~~~F~FD~VF~~~a-sQeeVy~~~~~plV~ 272 (715)
-.|+||+++=+-.-. ..+...|.-.+++++ . ...++.|.|++|+.... +-++++..-.+..++
T Consensus 57 lKG~IRcFAYi~~~~-----~p~~~~idY~~~~It--~---------~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~D 120 (333)
T 4etp_B 57 QKGTMRVYAYVMEQN-----LPENLLFDYENGVIT--Q---------GLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHD 120 (333)
T ss_dssp HHTCCEEEEEECCSS-----CCSSCEEETTTTEEE--C-----------CCCEEECSEEEETTTCCHHHHHHHTTHHHHH
T ss_pred hcCcEEEEEEECccc-----CCccEEEecccceEe--e---------cCCcceEEEeeeechhhcchHHHHHHHHHHHHH
Confidence 358899998876621 122223333444544 1 12567899999997665 345555566999999
Q ss_pred HHh-cCCCeEEEeeccCCCCCcccccCCChhhHHHHHHHHhhh---ccCcceEEEEEEEEEeCce-eecccCCcc-----
Q 005092 273 IIF-QRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHT---YRSQGFQLFVSFFEIYGGK-LFDLLSDRK----- 342 (715)
Q Consensus 273 ~vl-~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~~If~~i~~~---~~~~~~~V~vS~~EIYnE~-v~DLL~~~~----- 342 (715)
-++ .+.|+.||..|+.- -......++..+... | .+.|.+++-|+.+-.+. ..|||.+..
T Consensus 121 mcL~~~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y-~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~ 189 (333)
T 4etp_B 121 MALNQKKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIY-QKQYVITLQFVFLSDDEFSQDMLLDYSHNDKD 189 (333)
T ss_dssp HHHHTTCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHH-HHHEEEEEEEEECCSSSCCEESSCC-------
T ss_pred HHHccCCCeeEEEecCCC----------cHHHHHHHHHHHHhccccc-ccceEEEEEEEEEcCCCchhhhhccccccCCC
Confidence 988 79999999998762 112233455555443 2 25789999998887776 799997532
Q ss_pred --ceeeEecCCCcEEEeccEEEEeCCHHHHHHHHHhhhhccccccCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEE
Q 005092 343 --KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGK 420 (715)
Q Consensus 343 --~l~i~ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 420 (715)
++.+.++. + --+-+.+.+.+..+.+.++.. ..+. .......-.|+.+.+.......+.......-.
T Consensus 190 ~I~lkiee~s---I-~ldS~~i~i~~~~~~l~~~~k-------l~~~-~~~~~~GI~IlKfqf~~~~~~~~~n~~~~~~~ 257 (333)
T 4etp_B 190 SIKLKFEKHS---I-SLDSKLVIIENGLEDLPLNFS-------ADEH-PNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVD 257 (333)
T ss_dssp ---CEEETTE---E-ECCSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC--------CCCEE
T ss_pred CceEEeecce---E-eecceEEEeccccccchhhhc-------cccC-CCCCCCCceEEEEEEEecCcccccccCCccee
Confidence 12222211 1 112234555554332221110 0000 00011234567777765432211111112337
Q ss_pred EEEEECCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccccccccccCCcceeEEEEecCCC
Q 005092 421 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPS 500 (715)
Q Consensus 421 L~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~ 500 (715)
+.||.+-+.. ....|.++|.-= -.-.|+++-+||--|. ..+.++|.++.-.
T Consensus 258 fYFiEi~~~~---------------------ti~~l~~~i~~~-------~~~~spi~~ilkkLl~-~TKS~flfnl~~~ 308 (333)
T 4etp_B 258 FYFIELNNLK---------------------SIEQFDKSIFKK-------ESAETPIALVLKKLIS-DTKSFFLLNLNDS 308 (333)
T ss_dssp EEEEEECSHH---------------------HHHHHHSCC-----------CCCCHHHHHHHHHHH-HSBCEEEEEECCS
T ss_pred EEEEEecChh---------------------HHHHHHhhcCcc-------cccCCCHHHHHHHHHh-hCcceEEEEcCCc
Confidence 8899766432 122232222211 1334667777765443 5688999999765
Q ss_pred CCChHhHHHHHHHHHHhhc
Q 005092 501 SGCCEHTLNTLRYADRVKS 519 (715)
Q Consensus 501 ~~~~eETLsTLrfA~Rak~ 519 (715)
.. .-.-|..+.++.+
T Consensus 309 ~~----~~~lL~is~~i~~ 323 (333)
T 4etp_B 309 KN----VNKLLTISEEVQT 323 (333)
T ss_dssp TT----HHHHHHHHHHHHH
T ss_pred ch----hHHHHHHHHHHHH
Confidence 53 3334566665543
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.97 E-value=0.46 Score=43.93 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=23.0
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..+++.+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 3344445555666778999999999999883
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.56 E-value=0.42 Score=49.48 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=29.9
Q ss_pred eeeecCCCCChHHHHHHhhhhhHHHHhc--CC--CeEEEeeccCCCCCcccc
Q 005092 249 FDAVLNEEVSNDEVYRETVEPIVPIIFQ--RT--KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 249 FD~VF~~~asQeeVy~~~~~plV~~vl~--G~--N~tvfAYGqTGSGKTyTM 296 (715)
||.+|+..---..+.+.++..++...+. |. ...|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3444433333455556666666666554 22 246888999999999976
No 38
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.49 E-value=0.5 Score=43.74 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=23.0
Q ss_pred hhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 267 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 267 ~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..+++.+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 3444555555667788999999999999873
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.17 E-value=0.53 Score=47.33 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=21.9
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 37888887754333333322 222222 3466888999999999876
No 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=77.83 E-value=0.76 Score=48.71 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=20.9
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+-.|...+++-||++|+|||.++
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3344678889999999999999987
No 41
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.44 E-value=0.64 Score=46.68 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=31.9
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhH-----HHHhcCCCeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIV-----PIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV-----~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+.||.+.+.+...+.+.+. +..+- ..+-......|+-||++|+|||+++.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 46788888877666555543 33211 11111233458899999999999873
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.56 E-value=0.71 Score=46.69 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=31.6
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-----HHhcCCCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-----IIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-----~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+.||.+.+.+..-+.+.+.+..++.. ..--.....++-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3578888877654444444443333211 111134456899999999999877
No 43
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.12 E-value=1.3 Score=41.30 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=25.4
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+.||.-+. . .+.+++.. +..+ .| ..++-||++|+|||+.+.
T Consensus 13 ~~~~~~f~~-g-~n~~~~~~-l~~~-----~g--~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 13 YPSFDKFLG-T-ENAELVYV-LRHK-----HG--QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCCCCCCCS-C-CTHHHHHH-CCCC-----CC--SEEEEESSSTTTTCHHHH
T ss_pred ccchhhcCc-C-ccHHHHHH-HHhc-----CC--CEEEEECCCCCCHHHHHH
Confidence 355555333 3 44444443 3333 33 456779999999999984
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=74.86 E-value=1 Score=46.74 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=30.5
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+||..+.. ..+...+.. +..+++.-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 4788876532 245555544 444444311 123468899999999999884
No 45
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.67 E-value=0.85 Score=45.50 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=28.5
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhH-HHHhcC----CCeEEEeeccCCCCCccccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIV-PIIFQR----TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV-~~vl~G----~N~tvfAYGqTGSGKTyTM~ 297 (715)
..++||.|.+.+....++-+ +...+- ..++.+ ....++-||++|+|||+++.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 34678888765433333222 121110 012222 22338999999999999883
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.52 E-value=0.9 Score=47.01 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc----CCCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ----RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~----G~N~tvfAYGqTGSGKTyTM 296 (715)
.++||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 356777777554444555444444221 1111 23457899999999999887
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.67 E-value=0.71 Score=47.98 Aligned_cols=44 Identities=16% Similarity=0.404 Sum_probs=28.3
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..|.||.+++. +.+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 45788888764 333322 222333333445999999999999977
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.37 E-value=0.85 Score=47.66 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=25.3
Q ss_pred CChHHHHHHhhhhhHHHHh-cCCCeEEEeeccCCCCCccccc
Q 005092 257 VSNDEVYRETVEPIVPIIF-QRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl-~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..++...+.+.. .+..++ .+....++-||++|+|||+++.
T Consensus 22 ~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 22 PHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 334555544322 333333 3455678999999999999873
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.64 E-value=1.4 Score=41.56 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.8
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344345999999999999987
No 50
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.18 E-value=1.6 Score=41.56 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=17.7
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 344567766 577889999999754
No 51
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.01 E-value=1.4 Score=42.63 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
+..+++|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345567776 68889999999987
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.44 E-value=3 Score=46.08 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=36.9
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
..-+||.|-+-+.--+++.+.++.|+.. ..|. | .-..|+-||+.|+|||.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 4567888888766556677777777653 3333 3 3457899999999999875
No 53
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=71.40 E-value=1.6 Score=41.66 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=17.6
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+ ++..++||||||.+.
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHHH
Confidence 44567766 677789999999873
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.40 E-value=1.7 Score=41.89 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=27.7
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++||.++.. ..++.++.. +..++ ..+....++-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-l~~~~---~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-LKSAA---SGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-HHHHH---HTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-HHHHH---hCCCCCeEEEECCCCCCHHHHHH
Confidence 456655542 234555543 22222 23356778999999999999873
No 55
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.55 E-value=1.9 Score=43.45 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=20.9
Q ss_pred hHHHHh---cCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIF---QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl---~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++.+. ......++-||++|+|||++.
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 444443 456678999999999999987
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.40 E-value=0.97 Score=48.04 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=29.9
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHH-H---hcCCCeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPI-I---FQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~-v---l~G~N~tvfAYGqTGSGKTyTM 296 (715)
..||.+.+.+..-+.+.+.+..|+... + +.+....|+-||++|+|||+++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 467777664433334444333333211 1 2345667999999999999887
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=70.14 E-value=2 Score=45.07 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=31.1
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCe--EEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKA--TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~--tvfAYGqTGSGKTyTM 296 (715)
.+.||.+.+. +.+... +..+++.+-.|... .++-||++|+|||++.
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 4567777764 344332 34455555566553 8899999999999987
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=69.92 E-value=1.2 Score=45.44 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=31.7
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc---CCCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ---RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~---G~N~tvfAYGqTGSGKTyTM 296 (715)
...||.+.+.+..-+.+.+.+..|+.. .++. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 457788877544444444444344321 1222 23568999999999999877
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.57 E-value=2.5 Score=46.53 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=34.2
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
..-+||.|-+-+.--+++.+.+.-|+.. ..+. | ..-.|+-||+.|+|||.+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 3467788877654445555555555543 2333 3 3356999999999999886
No 60
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.83 E-value=2 Score=42.33 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=18.6
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.+ ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345667877 688899999999873
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.04 E-value=1.7 Score=44.12 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.0
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.|+-||++|||||+++.
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 38999999999999873
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=66.66 E-value=1.9 Score=47.34 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=29.4
Q ss_pred eeEEeeeec-CCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 245 HEFVFDAVL-NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 245 ~~F~FD~VF-~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
..|+||... ++ ++...+.. +..+++. .|..-.++-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g~--~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGP--GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCT--TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCC--chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 347888754 42 34444433 3344432 1213468899999999999984
No 63
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=66.65 E-value=2.2 Score=46.82 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=21.3
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++..++......+.-.|+||||||.||.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3444455566788999999999999983
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=66.27 E-value=2.6 Score=44.05 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=27.9
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCC-Ce--EEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KA--TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~-N~--tvfAYGqTGSGKTyTM 296 (715)
|.++.+++ ++...+. +...+..++.|. .. +++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44454444 4444444 333444554553 34 7899999999999987
No 65
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.15 E-value=1.7 Score=44.41 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.8
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999987
No 66
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=66.10 E-value=1.4 Score=43.55 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.| ++..++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567876 678999999999773
No 67
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.68 E-value=3.9 Score=40.33 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.8
Q ss_pred CCeEEEeeccCCCCCccccc
Q 005092 278 TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~ 297 (715)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999999873
No 68
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=65.61 E-value=1.6 Score=45.72 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=30.6
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHH-HHhcCC---CeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVP-IIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46777766544334444444444331 344442 246889999999999887
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.30 E-value=2.9 Score=45.89 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCC--eEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK--ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N--~tvfAYGqTGSGKTyTM 296 (715)
.+.||.+.+ |+++.+. +..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456777765 4555544 4455666666653 36888999999999886
No 70
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.16 E-value=2.5 Score=41.44 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 344567876 567789999999864
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.72 E-value=2 Score=44.75 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=17.0
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999987
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.50 E-value=2.8 Score=40.50 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.+ ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 345567776 567789999999765
No 73
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.17 E-value=2.6 Score=45.22 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=20.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+..++.-....+.-.|+||||||.||.
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 344444555688889999999999983
No 74
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=62.89 E-value=2.1 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.6
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..++.|.| ++..++||||||.+.
T Consensus 86 ~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 86 RPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHhCCCc--EEEEccCCCCchHHH
Confidence 34556766 678899999999763
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.31 E-value=1.4 Score=41.94 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=16.4
Q ss_pred HhcCCCeEEEeeccCCCCCcccc
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++|.+ ++..++||+|||.+.
T Consensus 45 ~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 45 ALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHTTCC--EEEECSCHHHHHHHH
T ss_pred HhcCCC--EEEEcCCCCCHHHHH
Confidence 445655 567899999999886
No 76
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.93 E-value=3 Score=40.58 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=17.5
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.|+ +..++||||||.+.
T Consensus 52 ~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 52 PIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHhCCCCE--EEECCCCChHHHHH
Confidence 445678764 77789999999764
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.72 E-value=1.1 Score=45.98 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=27.0
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHH-HHhcCCC----eEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVP-IIFQRTK----ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G~N----~tvfAYGqTGSGKTyTM 296 (715)
.+||.|-+.+.--+++.+.++.|+-. .++++.+ ..++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56666655444444555555555432 2333322 23899999999999887
No 78
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=61.28 E-value=3.1 Score=41.22 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=17.1
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.| ++..++||||||.+.
T Consensus 55 ~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 55 PAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 34567776 566789999999764
No 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.71 E-value=2.9 Score=43.83 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=24.4
Q ss_pred hHHHHHHhhhhhHHHHhcC-CCeEEEeeccCCCCCcccc
Q 005092 259 NDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 259 QeeVy~~~~~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 296 (715)
+++..+.+ ...+..++.| ....++-||++|+|||+++
T Consensus 25 r~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 25 REDILRDA-AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CHHHHHHH-HHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred hHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 44444442 3344444444 4558999999999999987
No 80
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=60.59 E-value=53 Score=31.69 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 005092 627 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLA----HFQK 702 (715)
Q Consensus 627 ~~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~----qfr~ 702 (715)
.+.+++|.++-..-+.. +.+.+..++.|+.-|-..+.|+. .-+...+++|..||.+|. .|+.
T Consensus 73 q~ql~~I~~e~r~~~~~----Lr~ql~akr~EL~aL~~a~~~De----------akI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSA----LRQQLISKRYEYNALLTASSPDT----------AKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTSSSCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665554444322 33445666777766655566662 233444455555555554 4555
Q ss_pred HHHHh
Q 005092 703 RLKEH 707 (715)
Q Consensus 703 ~L~ee 707 (715)
+|++|
T Consensus 139 em~Ke 143 (175)
T 3lay_A 139 AMAQA 143 (175)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55555
No 81
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.41 E-value=2.9 Score=41.25 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=18.1
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
++..+..|. .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 344455665 4678899999999765
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.18 E-value=23 Score=29.41 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQK 702 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~ 702 (715)
|+-|..|++.|++|-+.|..||.+|..||.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566788999999999999999999999864
No 83
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=60.16 E-value=2.2 Score=44.38 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=30.3
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhcCC---CeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
...||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777776544334444444333321 222332 346999999999999987
No 84
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.08 E-value=3.8 Score=43.15 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=18.8
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..++.|.+ ++..++||||||.+.
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHHH
Confidence 345567877 678999999999874
No 85
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.03 E-value=4.1 Score=45.00 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=35.0
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
...+||.|-+-+.--+++.+.+.-|+.. ..|. | ..-.|+-||+.|+|||.+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 4567888877655445566665556543 3443 3 2357999999999999876
No 86
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.79 E-value=3.1 Score=43.05 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=19.5
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..++.|...-+++.++||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45567774445788999999999763
No 87
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=59.08 E-value=3.6 Score=40.24 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=17.2
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.| ++..++||||||.+.
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHHH
Confidence 34567876 566789999999873
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=58.88 E-value=3.8 Score=41.81 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=17.0
Q ss_pred CCCeEEEeeccCCCCCccccc
Q 005092 277 RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.....+.-.|+||||||.++.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 344577888999999999983
No 89
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.79 E-value=2.1 Score=45.78 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=31.3
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc---CCCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ---RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~---G~N~tvfAYGqTGSGKTyTM 296 (715)
..+.||.+.+.+.--+.+.+.+..++.. .++. .....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567888877544334444433333321 1111 23467999999999999876
No 90
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=58.72 E-value=3.3 Score=40.83 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=17.0
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+ ++..++||||||.+.
T Consensus 61 ~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCcCHHHHHH
Confidence 34557876 456679999999874
No 91
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=58.56 E-value=3.8 Score=40.95 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=17.1
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+ ++..++||||||.+.
T Consensus 75 ~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 75 PLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEcCCCCCchhHh
Confidence 44567766 566679999999874
No 92
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=57.66 E-value=57 Score=30.12 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 628 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQ 696 (715)
Q Consensus 628 ~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~r 696 (715)
+.+..+|++|-+. +++..+++.+|..+|.. + .=+..|..|.++|...+..|...
T Consensus 7 ~~L~~~L~~~~~~-------l~~L~~lL~~E~~~L~~---~-----~d~~~L~~i~~~K~~ll~~L~~~ 60 (154)
T 3opc_A 7 AALKSCLERENAL-------VVEFLHALEAETEALMD---R-----RAHESLQAAVQRKETLADDLAQL 60 (154)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC---C-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh---c-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555 78888888999888872 0 22458888999998877777653
No 93
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=57.34 E-value=4.1 Score=44.96 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=27.2
Q ss_pred CChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..|+.+... .+.+...+-.|.-..++-||++|+|||++.
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 446665532 344555555666678999999999999887
No 94
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=57.29 E-value=5.8 Score=39.37 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.2
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...|+-||++|+|||+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4568999999999998873
No 95
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=56.87 E-value=5 Score=41.46 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=28.0
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHh--cCCCeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIF--QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl--~G~N~tvfAYGqTGSGKTyTM 296 (715)
.||.+.+ ++.+.+. +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4555544 4555544 334444443 234467899999999999876
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.86 E-value=4.6 Score=38.34 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.3
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..++-||++|+|||+++
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999987
No 97
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=56.78 E-value=2.8 Score=44.56 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=31.0
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHH-HHhcCC---CeEEEeeccCCCCCcccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVP-IIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
..||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 56788877655445555544444321 233332 235888999999999877
No 98
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.63 E-value=4.4 Score=42.24 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=25.8
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+.+++ |+.+.+. +-..+-.|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4555654 4554443 3333335533337889999999999983
No 99
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=55.41 E-value=4.1 Score=37.05 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.6
Q ss_pred CCeEEEeeccCCCCCcccccC
Q 005092 278 TKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~G 298 (715)
.+..|+-||.+|+|||+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGG
T ss_pred CCCcEEEECCCCccHHHHHHH
Confidence 345578899999999988744
No 100
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.21 E-value=2.8 Score=40.64 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+ ++..++||||||.+.
T Consensus 36 ~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 36 PGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44557766 467789999999873
No 101
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=55.18 E-value=6.3 Score=40.23 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=26.4
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHh--cCCCeEEEeeccCCCCCcccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIF--QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl--~G~N~tvfAYGqTGSGKTyTM 296 (715)
.||.+.+. +.+... +..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 45555543 344333 333343333 234467888999999999876
No 102
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=55.11 E-value=4.3 Score=40.98 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...++-||++|+|||++..
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568889999999999873
No 103
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=54.56 E-value=4.4 Score=44.18 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=20.1
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
+..++.|.+..++..|+||||||..
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHH
Confidence 4455667667789999999999976
No 104
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.38 E-value=5.4 Score=41.22 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.6
Q ss_pred hhHHHHhcCC---CeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQRT---KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~G~---N~tvfAYGqTGSGKTyTM 296 (715)
..+..+++|. .-||+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3466777876 458999999999999876
No 105
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=54.19 E-value=4.4 Score=42.78 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=17.7
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 69 KQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCCCchHHH
Confidence 44567877 677889999999764
No 106
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.57 E-value=44 Score=27.73 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 647 QVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHF 700 (715)
Q Consensus 647 ~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qf 700 (715)
.+|+.+.-++..+.--+ .--......+.++-.+|+-|+..+..||..|+.+
T Consensus 18 ~Le~~v~~le~~Le~s~---~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQ---SEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 35566665555543211 1112346889999999999999999999999875
No 107
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=53.56 E-value=5.3 Score=40.55 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=23.3
Q ss_pred ChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 258 sQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+++.+. +..++ -.|....++-||++|+|||++..
T Consensus 29 g~~~~~~~-l~~~l---~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 29 GQEHIVKR-LKHYV---KTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp SCHHHHHH-HHHHH---HHTCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHHHH-HHHHH---HcCCCCeEEEECcCCCCHHHHHH
Confidence 35555543 22333 34554458999999999999873
No 108
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.55 E-value=4.2 Score=42.03 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=26.0
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+.+.+.+.- +..+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 46666654332 2333334445533348889999999999873
No 109
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=53.02 E-value=4.7 Score=42.28 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=19.3
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..++.|.+..++..++||||||.+.
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 34556665556788899999999873
No 110
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=52.94 E-value=4.5 Score=42.01 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=18.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34556674455788899999999864
No 111
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=52.91 E-value=2.9 Score=45.84 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=29.3
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhcC---CCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
...||.|.+.+..-+.+.+.+..|+.. .+|.| ....|+-||++|+|||++.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356777776443333333333333221 23333 2356888999999999887
No 112
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=52.37 E-value=1.2e+02 Score=26.72 Aligned_cols=57 Identities=19% Similarity=0.398 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 641 VNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 641 ~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
+..|-.+|-....-||++..-.. -.|+. .+ ..-|.+....+..||++|++|++.|.+
T Consensus 44 i~~~E~QL~iArQKLkdAe~~~E--~DPDe------vN-K~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 44 ITAHEQQLVTARQKLKDAEKAVE--VDPDD------VN-KSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HCCCH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCcH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887766443 23431 11 234566677899999999999999875
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.11 E-value=30 Score=29.24 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 646 KQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHF 700 (715)
Q Consensus 646 ~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qf 700 (715)
..+|+.+.-++..+.--+ .--......+.++-.+|+-|+..+..||..|+.+
T Consensus 23 ~~Le~~v~~le~~Le~s~---~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEAR---AERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 335666666665553221 1112356889999999999999999999999986
No 114
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.01 E-value=3.9 Score=40.90 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.9
Q ss_pred HHhcC--CCeEEEeeccCCCCCccccc
Q 005092 273 IIFQR--TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 273 ~vl~G--~N~tvfAYGqTGSGKTyTM~ 297 (715)
.++.| ..-+++-||+.|+|||++..
T Consensus 50 ~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 50 SFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 44455 33469999999999998863
No 115
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=51.79 E-value=4.6 Score=45.10 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=31.4
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhH-----HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIV-----PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV-----~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
...||.+.+.+..-+.+.+.+..++- ..+-......|+-||++|+|||+..
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 35677776654444555554433321 1111234567999999999999976
No 116
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.74 E-value=6.1 Score=44.51 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=19.3
Q ss_pred hhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 269 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 269 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+++.+.+|.+.++++ ++||||||.++.
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444455576655554 999999999973
No 117
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=51.70 E-value=4.8 Score=40.05 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=22.1
Q ss_pred cCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 253 LNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 253 F~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|.+..-|.+.+. .++++.+ ++.+|+||+|||++.
T Consensus 92 ~~l~~~Q~~ai~--------~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 92 ISLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp CCCCHHHHHHHH--------HHTTTSE--EEEEESSSTTHHHHH
T ss_pred CCcCHHHHHHHH--------HHHhCCC--EEEEeCCCCCHHHHH
Confidence 344444555443 3445554 677789999999986
No 118
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.34 E-value=5.4 Score=43.65 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=34.8
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
.-+||.|-+-+.--+++-+.+.-|+.. .+|. | ....|+-||+.|+|||.+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356777777655556666666666653 3443 3 3356999999999999876
No 119
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=51.17 E-value=5.4 Score=40.48 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=17.2
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.+++|.+ ++..++||||||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 34556766 567789999999865
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=50.79 E-value=5 Score=43.03 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=17.3
Q ss_pred CCCeEEEeeccCCCCCccccc
Q 005092 277 RTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.....+.-.|+||||||.++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678889999999999983
No 121
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.60 E-value=14 Score=40.86 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=33.3
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
..-+||.|=+-+.--+++.+.+.-|+.. ..|. | .-..|+-||+.|+|||.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 3457777766544445555555555532 2333 3 3467999999999999865
No 122
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=50.41 E-value=5.5 Score=41.81 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=17.4
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+ ++..++||||||.+.
T Consensus 53 ~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 53 PVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHhcCCC--EEEECCCCcHHHHHH
Confidence 44556776 677889999999764
No 123
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.92 E-value=12 Score=38.46 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=21.8
Q ss_pred hhhhhHHHHhcCC-----CeEEEeeccCCCCCcccc
Q 005092 266 TVEPIVPIIFQRT-----KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 266 ~~~plV~~vl~G~-----N~tvfAYGqTGSGKTyTM 296 (715)
+...++..++.++ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4455555555542 356888999999999876
No 124
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.85 E-value=4.5 Score=41.06 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.8
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...++-+|++|+|||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 357999999999999877
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=49.62 E-value=4.7 Score=36.70 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=16.8
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999876
No 126
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.39 E-value=5 Score=40.62 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.8
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444899999999999987
No 127
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=48.83 E-value=6.6 Score=44.10 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=17.1
Q ss_pred HhcCCCeEEEeeccCCCCCccccc
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
+-.|.+ +.-.|+||||||.||.
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHHH
Confidence 335665 6778999999999983
No 128
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=48.69 E-value=6.2 Score=41.59 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=17.4
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 44567877 467889999999754
No 129
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.43 E-value=19 Score=29.47 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ 705 (715)
|+=+..|+.-|..|-++|..||.+|.+|+.-|.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566788899999999999999999987664
No 130
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=47.19 E-value=6.3 Score=41.54 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHhcC---CCeEEEe--eccCCCCCccccc
Q 005092 272 PIIFQR---TKATCFA--YGQTGSGKTYTMK 297 (715)
Q Consensus 272 ~~vl~G---~N~tvfA--YGqTGSGKTyTM~ 297 (715)
..+..| ....++- ||+.|+|||+++.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 444555 4567888 9999999999873
No 131
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=46.61 E-value=6.6 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=18.8
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.+..++..++||||||.+.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4556664456788899999999873
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=46.34 E-value=11 Score=38.75 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999873
No 133
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.85 E-value=10 Score=41.77 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=28.1
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
.||.|.+. +... ..+++.+-.+....++-||++|+|||+...+
T Consensus 178 ~ld~iiGr----~~~i----~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----HHHH----HHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 46666654 3333 3344444455666788999999999998844
No 134
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.17 E-value=5.2 Score=41.38 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=22.1
Q ss_pred ChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 258 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 258 sQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.|+++...+ ...+..|. .|+-||++|+|||+.+.
T Consensus 31 g~~~~~~~l----~~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 31 GQKYMINRL----LIGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp SCHHHHHHH----HHHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHH----HHHHHcCC--eEEEECCCCCcHHHHHH
Confidence 455554433 33333443 57889999999999873
No 135
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=44.38 E-value=7.8 Score=41.17 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.| ++..++||||||...
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 344567775 678899999999843
No 136
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=44.23 E-value=9.1 Score=42.54 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=19.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
|..++.|.+--++..++||||||.+
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHhcCCCCeEEEECCCCCCccHH
Confidence 3455666666789999999999986
No 137
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=43.78 E-value=8.2 Score=40.17 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..++.|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 345667766 566789999999864
No 138
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.14 E-value=55 Score=35.22 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005092 689 GIMQLQTQLAHFQKRLKEHNV 709 (715)
Q Consensus 689 ~I~~Lq~rL~qfr~~L~eee~ 709 (715)
.|..||..|...+.++++=|+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665554
No 139
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=43.10 E-value=7.4 Score=42.55 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=19.7
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
+|..+++|.+. ++..++||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 45667788764 56779999999997
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=42.94 E-value=9.9 Score=37.99 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 260 DEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 260 eeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
+.+|+.+...++.....+. ...|+-.|+.|||||+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 3444444444443332222 256888999999999864
No 141
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=42.58 E-value=8.6 Score=41.60 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=17.6
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..++.|.+ +++.++||||||...
T Consensus 88 ~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 88 PVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEECCCCCCchHHH
Confidence 34567876 577889999999863
No 142
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.47 E-value=4.3 Score=45.19 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=33.9
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CCeEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 296 (715)
..+||-|-+-+.--+++.+.+.-|+.. ..|. | .--.|+-||+.|+|||.+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 467888877655445555555555543 3333 3 3467999999999999765
No 143
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=42.43 E-value=12 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|+.++.|.+ +++..+||+|||.+.
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHHH
Confidence 345567887 677889999999763
No 144
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.34 E-value=45 Score=27.68 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005092 676 VSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVL 710 (715)
Q Consensus 676 V~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee~l 710 (715)
|..|...|.+|.++|....+++..+..+|.+-+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~e 55 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDEL 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888765543
No 145
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=42.23 E-value=8.6 Score=44.14 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=17.5
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
|..++.... ..+-.|+.|||||+|+.
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 334443333 34677999999999983
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=41.97 E-value=11 Score=39.22 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999987
No 147
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=41.60 E-value=5.8 Score=40.10 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=12.0
Q ss_pred EeeccCCCCCcccc
Q 005092 283 FAYGQTGSGKTYTM 296 (715)
Q Consensus 283 fAYGqTGSGKTyTM 296 (715)
+..++||||||.+.
T Consensus 132 ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 132 ILNLPTSAGRSLIQ 145 (282)
T ss_dssp EECCCTTSCHHHHH
T ss_pred EEEcCCCCCcHHHH
Confidence 34899999999886
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.60 E-value=8.8 Score=38.83 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.4
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|.-..++-||+.|+|||++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444333889999999999887
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=41.54 E-value=15 Score=38.08 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999987
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=40.66 E-value=14 Score=35.59 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=18.9
Q ss_pred hhhHHHHhc--CCCeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQ--RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~--G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++.+.. ...-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 334444432 33445667799999999877
No 151
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.66 E-value=6.7 Score=46.64 Aligned_cols=43 Identities=30% Similarity=0.528 Sum_probs=28.3
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
.||.|++. ++. +..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~~~----i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----DEE----IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----HHH----HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 56666654 333 33444444556555678899999999998854
No 152
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=40.58 E-value=10 Score=41.52 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=18.1
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|..+++|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567877 567789999999774
No 153
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.79 E-value=11 Score=36.61 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=22.6
Q ss_pred hhhHHHHhcC---CCeEEEeeccCCCCCccccc
Q 005092 268 EPIVPIIFQR---TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 268 ~plV~~vl~G---~N~tvfAYGqTGSGKTyTM~ 297 (715)
-+-++.++.| ....+.-+|++|+|||..+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 3556777764 34567889999999999873
No 154
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=39.72 E-value=6.1 Score=44.34 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.7
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999987
No 155
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=39.57 E-value=11 Score=36.88 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=17.6
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++++-.|.- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4444545554 444799999999987
No 156
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.46 E-value=48 Score=37.13 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005092 671 QLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVL 710 (715)
Q Consensus 671 di~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee~l 710 (715)
+++.=++.|+.-++.++..|..||..|...+.++++=|+-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666668888999999988888877764
No 157
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.32 E-value=1.6e+02 Score=32.79 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 628 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 628 ~~~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
+.+.+.+++.++..+.....++..-+-.++.++.++ .++.-+.+|+..++.+.+.+..|+.++...++++++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE-------DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh-------hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444444444444444443 2345667788888888888888888888887777765
Q ss_pred h
Q 005092 708 N 708 (715)
Q Consensus 708 e 708 (715)
+
T Consensus 578 ~ 578 (597)
T 3oja_B 578 E 578 (597)
T ss_dssp H
T ss_pred H
Confidence 4
No 158
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=39.24 E-value=9.8 Score=38.93 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=17.0
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|. ..++..++||||||.+.
T Consensus 38 ~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHhCCC-CCEEEECCCCChHHHHH
Confidence 3445563 24677899999999874
No 159
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=38.85 E-value=13 Score=40.70 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=24.1
Q ss_pred CChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 257 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 257 asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..|.+++..+.. .+..+ +..++..|..|||||+++
T Consensus 28 ~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 28 EGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHH
Confidence 457776665432 23333 348899999999999887
No 160
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=38.43 E-value=26 Score=40.37 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=50.9
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccCCC-------------hhhHHHHHHHHhh
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-------------LKASRDILRLMHH 313 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~-------------~~a~~~If~~i~~ 313 (715)
|..-.=|.|...|..-+.. +++.+-.|... ....|.||||||+||-.+. ...+..++..+..
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 6666668888999877665 45555566532 3456999999999994311 1223445555555
Q ss_pred hccCcceEEEEEEEEEeC
Q 005092 314 TYRSQGFQLFVSFFEIYG 331 (715)
Q Consensus 314 ~~~~~~~~V~vS~~EIYn 331 (715)
........++.||+.-|.
T Consensus 80 ~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 80 FFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HCTTSEEEEECCCEEEEE
T ss_pred HcCCCcEEEccccccccC
Confidence 444445666777766664
No 161
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.37 E-value=10 Score=43.29 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.8
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 456889999999999997
No 162
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.36 E-value=12 Score=40.91 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..++.|.+ ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 344567876 567789999999774
No 163
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.17 E-value=15 Score=35.21 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=19.7
Q ss_pred hhhHHHHhc---CCCeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQ---RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~---G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++.+.. .....|.-.|.+|||||+++
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 334444443 23456778899999999876
No 164
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=38.13 E-value=7 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345566766 567789999999873
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=38.06 E-value=11 Score=38.88 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.0
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678899999999999865
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.91 E-value=9.2 Score=39.60 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=14.4
Q ss_pred EEeeccCCCCCccccc
Q 005092 282 CFAYGQTGSGKTYTMK 297 (715)
Q Consensus 282 vfAYGqTGSGKTyTM~ 297 (715)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999874
No 167
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=37.90 E-value=1.8e+02 Score=24.41 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 639 DLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 639 ~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
+=+..|-.+|-....-|+++..-.. -.|+. .+ ..-|.+....+..|+++|++|++.|.+
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e--~DPDe------vN-K~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 12 DNITLHEQRLVTTRQKLKDAERAVE--LDPDD------VN-KSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HCCCH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCcH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356788888777777887765443 23431 11 234566677899999999999998875
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=37.35 E-value=7 Score=43.58 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999987
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=37.18 E-value=13 Score=35.63 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred hhhHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 3456667753 2356778899999999887
No 170
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=36.86 E-value=23 Score=42.14 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=36.9
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhcCCC----eEEEeeccCCCCCcccc
Q 005092 246 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQRTK----ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 246 ~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~G~N----~tvfAYGqTGSGKTyTM 296 (715)
..+||.|-+-+..-+++.+.+.-||.. .+|.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 467888887766666776666566653 4555543 46999999999999876
No 171
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=36.69 E-value=11 Score=40.70 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=16.3
Q ss_pred HHhcCCCeEEEeeccCCCCCcccc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.++++.+ ++..++||+|||.+.
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445544 677889999999986
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=36.59 E-value=13 Score=35.53 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=20.0
Q ss_pred hhHHHHhc-C--CCeEEEeeccCCCCCccccc
Q 005092 269 PIVPIIFQ-R--TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 269 plV~~vl~-G--~N~tvfAYGqTGSGKTyTM~ 297 (715)
+-++.++. | ....+.-+|++|+|||..+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566665 3 23456668999999999873
No 173
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=36.30 E-value=14 Score=41.40 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=18.8
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
|..++.|.+.-+++.++||||||.+
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHH
Confidence 3445555556678899999999986
No 174
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=36.22 E-value=17 Score=41.97 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=30.6
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 247 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 247 F~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
|.+... .|.-.|..-+.. +++.+-.|... ....|.||||||+||-
T Consensus 2 ~~~~~~-~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 344433 777888776655 45555566543 3457999999999994
No 175
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=35.78 E-value=17 Score=37.68 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..+.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677899999999998
No 176
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.77 E-value=9.3 Score=35.76 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..+.-.|++|||||+.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999999984
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=35.72 E-value=13 Score=35.24 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=22.4
Q ss_pred hhhHHHHhc-CC--CeEEEeeccCCCCCccccc
Q 005092 268 EPIVPIIFQ-RT--KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 268 ~plV~~vl~-G~--N~tvfAYGqTGSGKTyTM~ 297 (715)
-+-++.++. |. ...+.-+|.+|+|||..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 345677776 43 3578889999999998873
No 178
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.51 E-value=19 Score=42.05 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=27.8
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
.||.|.+. ++.. +.+++.+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG~----~~~i----~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----hHHH----HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 45666553 3333 334444445666678999999999999874
No 179
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.38 E-value=14 Score=43.76 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=36.0
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc----CCCeEEEeeccCCCCCcccc
Q 005092 245 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ----RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 245 ~~F~FD~VF~~~asQeeVy~~~~~plV~-~vl~----G~N~tvfAYGqTGSGKTyTM 296 (715)
..+.||.|.+.+..-+.+.+.+..|+.. .++. .....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578899988776666676665555442 2232 23346899999999999876
No 180
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.03 E-value=39 Score=26.49 Aligned_cols=37 Identities=8% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 668 PGNQ---LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRL 704 (715)
Q Consensus 668 pgsd---i~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L 704 (715)
.||+ +|+|..++..-++.-.+++..|++++..++.+|
T Consensus 18 rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 18 RGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp TEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555 678888888888888888888888888776554
No 181
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=34.92 E-value=13 Score=42.36 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|+.+++|.+ ++..++||+|||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 344556776 677899999999875
No 182
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.33 E-value=2.5e+02 Score=25.05 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005092 640 LVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 707 (715)
Q Consensus 640 ~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ee 707 (715)
=+..|-.+|-....-|+++..-.. -.|+. .+ ..-|.+....+..|+++|++|++.|.+-
T Consensus 30 Ei~~~E~QL~~ArQKLkdA~~~~e--~DPDe------vN-K~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 30 EINAHEGQLVIARQKVRDAEKQYE--KDPDE------LN-KRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HCCCH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCcH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655433 13331 11 2345666778999999999999988753
No 183
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=33.99 E-value=2.4e+02 Score=24.59 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 639 DLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 639 ~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
+=+..|-.+|-....-|+++..... -.|+. .+ ..-|.+....+..||++|++|++.|.+
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e--~DPDe------vN-k~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 12 DNITLHEQRLVTTRQKLKDAERAVE--LDPDD------VN-KSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HCCCH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCcH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777777777777777665443 23331 11 234566667889999999999988875
No 184
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=33.97 E-value=11 Score=36.66 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..+.-.|++|||||.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 455668999999999883
No 185
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.93 E-value=16 Score=42.45 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=28.6
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccccC
Q 005092 248 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 248 ~FD~VF~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 298 (715)
.||.|++. +.. ++.+++.+.......++-||++|+|||+.+.+
T Consensus 184 ~~d~~iGr----~~~----i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 184 GIDPLIGR----EKE----LERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCccCC----HHH----HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 56666653 333 33344444455666788899999999998854
No 186
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=33.48 E-value=10 Score=40.05 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=15.8
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 187
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=33.31 E-value=14 Score=42.21 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 356789999999999973
No 188
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=32.45 E-value=11 Score=39.76 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.4
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999976
No 189
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.77 E-value=46 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005092 688 AGIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 688 ~~I~~Lq~rL~qfr~~L~ 705 (715)
.++..||++|..+|.+|+
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 467889999999988875
No 190
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=31.70 E-value=10 Score=40.31 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
|.-++..|+||||||+++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3445677999999999983
No 191
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.59 E-value=15 Score=38.82 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=16.5
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++| .++..++||+|||.++
T Consensus 19 ~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 19 AKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHhhC---CEEEEcCCCCCHHHHH
Confidence 445566 4566789999999886
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.41 E-value=24 Score=37.09 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.0
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
...+.-.|++|+|||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346677899999999998
No 193
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.41 E-value=12 Score=35.30 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-.|++|||||.++
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999887
No 194
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.25 E-value=2.4e+02 Score=30.33 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005092 689 GIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 689 ~I~~Lq~rL~qfr~~L~e 706 (715)
...+|+ .|..||.-|++
T Consensus 129 V~~q~~-~ir~Lq~~l~~ 145 (390)
T 1deq_A 129 VIEQVQ-RINLLQKNVRD 145 (390)
T ss_pred HHHHhH-HHHHHHHHHHH
Confidence 444555 55555555543
No 195
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.25 E-value=51 Score=27.59 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 708 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~eee 708 (715)
+.-|..|+.++.+....|..|+.+|..+..+|++-+
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677888999999999999999999998887533
No 196
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=30.99 E-value=18 Score=38.45 Aligned_cols=20 Identities=40% Similarity=0.410 Sum_probs=14.7
Q ss_pred hcCCCeEEEeeccCCCCCcccc
Q 005092 275 FQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM 296 (715)
-.|.+. .-.|+||||||.++
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHH
Confidence 345543 44499999999988
No 197
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=30.88 E-value=14 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999865
No 198
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.79 E-value=19 Score=40.36 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.0
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 297 (715)
++..++.|. -|+-||++|+|||+...
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 344445554 57889999999999874
No 199
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=30.73 E-value=19 Score=41.01 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=17.3
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..++.|.| ++..++||||||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 34556776 567889999999853
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.65 E-value=17 Score=35.13 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=20.4
Q ss_pred hhHHHHhcC---CCeEEEeeccCCCCCcccc
Q 005092 269 PIVPIIFQR---TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 269 plV~~vl~G---~N~tvfAYGqTGSGKTyTM 296 (715)
+-++.++.| ....+.-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345666654 3456788999999999985
No 201
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.22 E-value=79 Score=26.30 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
-+||..|..-..+-...+..|+.+..+++.+|..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888889999999999888864
No 202
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.16 E-value=13 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666799999999987
No 203
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=30.02 E-value=12 Score=40.50 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
+.-++..|.||||||.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~ 71 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLR 71 (437)
T ss_dssp GGCEEEEECTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 4567899999999999873
No 204
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=29.88 E-value=13 Score=34.91 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999877
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.66 E-value=26 Score=40.79 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=14.9
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.++-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999977
No 206
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.53 E-value=26 Score=37.44 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..+.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46777899999999998
No 207
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=29.29 E-value=20 Score=36.40 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999887
No 208
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.21 E-value=19 Score=40.01 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999987
No 209
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.82 E-value=15 Score=40.25 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred HhcCCCeEEEeeccCCCCCcccc
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++|.+..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999876
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.29 E-value=14 Score=34.42 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999876
No 211
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.19 E-value=21 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=22.0
Q ss_pred hhhHHHHhc-CCCeEEEeeccCCCCCcccc
Q 005092 268 EPIVPIIFQ-RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 268 ~plV~~vl~-G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++.+|. .....|...|.+|+|||..+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 334555666 56778999999999999776
No 212
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.02 E-value=86 Score=26.20 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
-+||..|..--.+-...+..|+.+...++++|.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6888888888888888888888888888888763
No 213
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.92 E-value=17 Score=41.18 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred CCCeEEEeeccCCCCCcccc
Q 005092 277 RTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 277 G~N~tvfAYGqTGSGKTyTM 296 (715)
-.+..++..|..|||||+|+
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHH
Confidence 34566888999999999998
No 214
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.85 E-value=15 Score=38.09 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHhcCCCeEEEeeccCCCCCcccc
Q 005092 273 IIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 273 ~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+++|.+..|...|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999877
No 215
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=27.84 E-value=23 Score=43.08 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=17.3
Q ss_pred HHHHhcCCCeEEEeeccCCCCCccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
|..+++|. .++..++||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 34556775 478899999999964
No 216
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=27.73 E-value=14 Score=34.93 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
+.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999987
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.69 E-value=18 Score=36.35 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.8
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 4679999999999999984
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.01 E-value=15 Score=35.03 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=12.9
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999987
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.95 E-value=33 Score=39.82 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999987
No 220
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=26.87 E-value=30 Score=35.66 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=22.1
Q ss_pred HHHHHHhhhhhHHHHh--cCCCeEEEeeccCCCCCcccc
Q 005092 260 DEVYRETVEPIVPIIF--QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 260 eeVy~~~~~plV~~vl--~G~N~tvfAYGqTGSGKTyTM 296 (715)
+.++..++.-+..... .+....|.-.|.+|||||+++
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455554444443222 233455667799999999876
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.69 E-value=18 Score=37.65 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666799999999998
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=26.60 E-value=14 Score=35.43 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999988
No 223
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.28 E-value=21 Score=34.78 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=9.3
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999987
No 224
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.25 E-value=22 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.8
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
+..++-.|..|||||+|+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3567779999999999984
No 225
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=26.13 E-value=34 Score=40.53 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..++-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 226
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=26.06 E-value=16 Score=37.17 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.5
Q ss_pred CeEEEeeccCCCCCcccc
Q 005092 279 KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM 296 (715)
+-++...|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 456788899999999887
No 227
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=26.01 E-value=24 Score=41.33 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 344567876 567789999999874
No 228
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=25.99 E-value=19 Score=32.96 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999999854
No 229
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.77 E-value=14 Score=41.35 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=17.3
Q ss_pred HHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 271 VPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 271 V~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
|+.+++|.++ +..++||||||.+.
T Consensus 34 i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 34 IDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHcCCCE--EEECCCCcHHHHHH
Confidence 3455678764 55679999999754
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=25.55 E-value=19 Score=33.36 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999865
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=25.40 E-value=18 Score=34.07 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 232
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.37 E-value=23 Score=41.97 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 356789999999999984
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=25.18 E-value=18 Score=33.87 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-.|+.|||||.++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999987
No 234
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=25.16 E-value=19 Score=39.43 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCCeEEEeeccCCCCCcccc
Q 005092 254 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 254 ~~~asQeeVy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
.+..-|.+.+.. ++.|. -++..|+||||||.+.
T Consensus 113 ~l~~~Q~~ai~~--------~~~~~--~~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 113 EPHWYQKDAVFE--------GLVNR--RRILNLPTSAGRSLIQ 145 (510)
T ss_dssp CCCHHHHHHHHH--------HHHHS--EEEEECCSTTTHHHHH
T ss_pred CCCHHHHHHHHH--------HHhcC--CcEEEeCCCCCHHHHH
Confidence 444556655544 33343 3577899999999986
No 235
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=24.87 E-value=24 Score=41.75 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..++..|+.|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 356789999999999974
No 236
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=24.84 E-value=13 Score=36.99 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCCcccccC
Q 005092 279 KATCFAYGQTGSGKTYTMKP 298 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~G 298 (715)
...++-||.+|+|||..+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35678889999999988744
No 237
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=24.79 E-value=26 Score=37.96 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999884
No 238
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=24.77 E-value=25 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=17.6
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+++|.| ++..++||||||.+.
T Consensus 258 ~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 258 QPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEEeCCCchHHHHH
Confidence 34467876 566789999999874
No 239
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.70 E-value=87 Score=21.42 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005092 687 AAGIMQLQTQLAHFQKR 703 (715)
Q Consensus 687 a~~I~~Lq~rL~qfr~~ 703 (715)
...+..||.++.+++.-
T Consensus 12 ~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 12 NAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677777777543
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=24.65 E-value=20 Score=37.09 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..+.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456667999999999983
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=24.62 E-value=21 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|+-.|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999876
No 242
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.54 E-value=26 Score=41.45 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHhcCCCeEEEeeccCCCCCcccc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
..+-.+....++..|+||||||...
T Consensus 382 ~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 382 NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hhccccCCCcEEEEcCCCCCHHHHH
Confidence 3334455556788999999999875
No 243
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=24.54 E-value=26 Score=35.57 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999987
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=24.44 E-value=19 Score=34.57 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455699999999987
No 245
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=24.14 E-value=36 Score=39.73 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=20.1
Q ss_pred hcCCCeEEEeeccCCCCCcccc
Q 005092 275 FQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKTyTM 296 (715)
-++.|-||+.-|.+|||||.+.
T Consensus 90 ~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 3699999999999999999885
No 246
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=24.06 E-value=19 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999887
No 247
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=23.79 E-value=31 Score=42.11 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=16.2
Q ss_pred HHHhcCCCeEEEeeccCCCCCcc
Q 005092 272 PIIFQRTKATCFAYGQTGSGKTY 294 (715)
Q Consensus 272 ~~vl~G~N~tvfAYGqTGSGKTy 294 (715)
..+++|.| +++.++||||||.
T Consensus 66 ~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 66 KRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHhCCC--EEEEcCCCCCHHH
Confidence 44567766 5788999999995
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=23.55 E-value=21 Score=33.13 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|+..|..|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999876
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=23.54 E-value=17 Score=38.16 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=15.7
Q ss_pred HhcCCCeEEEeeccCCCCCcccc
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+-.|.+ +.-.|+||||||.++
T Consensus 168 i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCC--EEEEESTTSCHHHHH
T ss_pred ccCCCE--EEEECCCCCCHHHHH
Confidence 334654 556699999999987
No 250
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.39 E-value=2.4e+02 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 005092 672 LDDYVSRLNAILSQKAA-------GIMQLQTQLAHF 700 (715)
Q Consensus 672 i~~yV~~L~~ILs~Ka~-------~I~~Lq~rL~qf 700 (715)
+...|..|+.=|+..-. ....|+.++..+
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544432 234455555544
No 251
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=23.38 E-value=35 Score=38.29 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|.-.|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35677799999999998
No 252
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.26 E-value=20 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.++-||..|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999874
No 253
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=23.19 E-value=30 Score=37.73 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccc
Q 005092 281 TCFAYGQTGSGKTYT 295 (715)
Q Consensus 281 tvfAYGqTGSGKTyT 295 (715)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467789999999998
No 254
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.05 E-value=28 Score=33.03 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCeEEEeeccCCCCCcccc
Q 005092 278 TKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM 296 (715)
....|.-.|.+|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4456777899999999876
No 255
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.98 E-value=60 Score=33.48 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
.+...|.+|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999983
No 256
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=22.80 E-value=40 Score=39.86 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.7
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|.||+.-|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 689999999999999999885
No 257
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.69 E-value=52 Score=36.08 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
..|+..|.+|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456667999999999983
No 258
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.46 E-value=44 Score=41.31 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHhcCCCeEEEeeccCCCCCccc
Q 005092 262 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 262 Vy~~~~~plV~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
||.-.-...-.-+-++.|-||+.-|.+|||||.+
T Consensus 152 i~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 152 IYAIADTAYRSMLQDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred HhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHH
No 259
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=22.40 E-value=25 Score=40.31 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=17.0
Q ss_pred CCeEEEeeccCCCCCccccc
Q 005092 278 TKATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 278 ~N~tvfAYGqTGSGKTyTM~ 297 (715)
.+..++..|..|||||+|+.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46678888999999999983
No 260
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=22.34 E-value=29 Score=37.72 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.1
Q ss_pred HhcCCCeEEEeeccCCCCCcccc
Q 005092 274 IFQRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 274 vl~G~N~tvfAYGqTGSGKTyTM 296 (715)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345554 578899999999984
No 261
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=22.28 E-value=43 Score=41.29 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=19.4
Q ss_pred hHHHHhcCCCeEEEeeccCCCCCccc
Q 005092 270 IVPIIFQRTKATCFAYGQTGSGKTYT 295 (715)
Q Consensus 270 lV~~vl~G~N~tvfAYGqTGSGKTyT 295 (715)
++.++-.|...-++..|+||||||.+
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 33444457766789999999999965
No 262
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=22.19 E-value=41 Score=39.82 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 589999999999999999885
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.02 E-value=21 Score=34.39 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999988
No 264
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=21.97 E-value=25 Score=34.48 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=15.0
Q ss_pred hcCCCeEEEeeccCCCCCc-ccc
Q 005092 275 FQRTKATCFAYGQTGSGKT-YTM 296 (715)
Q Consensus 275 l~G~N~tvfAYGqTGSGKT-yTM 296 (715)
...--...|-||..||||| +.|
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp ---CCEEEEEEECTTSCHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHH
Confidence 3333447899999999999 444
No 265
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=21.78 E-value=47 Score=37.91 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCccccc
Q 005092 280 ATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM~ 297 (715)
.-++..|.||||||+++.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 457889999999999883
No 266
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=21.57 E-value=20 Score=34.91 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 005092 282 CFAYGQTGSGKTYTM 296 (715)
Q Consensus 282 vfAYGqTGSGKTyTM 296 (715)
+.-.|++|||||.++
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 267
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=21.41 E-value=21 Score=41.26 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..++..|+||||||...
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 34788999999999764
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=21.39 E-value=26 Score=34.66 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=22.7
Q ss_pred EEEeeccCCCCCcccc------cCCChhhHHHHHHH
Q 005092 281 TCFAYGQTGSGKTYTM------KPLPLKASRDILRL 310 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM------~Gl~~~a~~~If~~ 310 (715)
.||-.|+.||||++-. +|+......++++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHH
Confidence 5788999999998754 46666667777764
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.36 E-value=26 Score=33.20 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6788899999999876
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.34 E-value=26 Score=35.08 Aligned_cols=16 Identities=44% Similarity=0.495 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|++|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999754
No 271
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=21.34 E-value=26 Score=32.15 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCccccc
Q 005092 281 TCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM~ 297 (715)
..+-+|++|||||..|.
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999999873
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.14 E-value=25 Score=34.29 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=21.5
Q ss_pred EEeeccCCCCCcccc------cCCChhhHHHHHHH
Q 005092 282 CFAYGQTGSGKTYTM------KPLPLKASRDILRL 310 (715)
Q Consensus 282 vfAYGqTGSGKTyTM------~Gl~~~a~~~If~~ 310 (715)
|+-.|+.||||++-- +|++.....++++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence 677899999998653 46666666777664
No 273
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=21.12 E-value=43 Score=40.83 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.7
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999885
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.08 E-value=28 Score=32.07 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999865
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.97 E-value=52 Score=36.23 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.2
Q ss_pred CeEEEeeccCCCCCccccc
Q 005092 279 KATCFAYGQTGSGKTYTMK 297 (715)
Q Consensus 279 N~tvfAYGqTGSGKTyTM~ 297 (715)
...|+..|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4578889999999999984
No 276
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=20.75 E-value=46 Score=39.48 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999885
No 277
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=20.68 E-value=45 Score=40.54 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|-||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 689999999999999999885
No 278
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=20.66 E-value=46 Score=39.37 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|-||+.-|.+|+|||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 689999999999999999885
No 279
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=20.64 E-value=24 Score=35.46 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.5
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999766
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=20.63 E-value=26 Score=31.98 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999865
No 281
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.54 E-value=1.6e+02 Score=24.87 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 673 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 706 (715)
Q Consensus 673 ~~yV~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~e 706 (715)
-+||..|..-..+-...+..|+.+-.+++.+|++
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888777777777788887777777764
No 282
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=20.52 E-value=26 Score=32.24 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45778899999999876
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=20.21 E-value=25 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCCcccc
Q 005092 280 ATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 280 ~tvfAYGqTGSGKTyTM 296 (715)
..|.-.|++|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999998
No 284
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=20.17 E-value=3e+02 Score=24.86 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 630 LSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQ 694 (715)
Q Consensus 630 ~~~ileeee~~~~aHr~~~e~~~~~~k~Em~LL~~~D~pgsdi~~yV~~L~~ILs~Ka~~I~~Lq 694 (715)
+..+|+++.++ +++..+++++|..+|..-| +..|..|..+|...+..|+
T Consensus 8 L~~~L~~~~~~-------l~~L~~lL~~E~~~L~~~d---------~~~L~~i~~~k~~ll~~L~ 56 (157)
T 2fup_A 8 LLDLFAEDIGH-------ANQLLQLVDEEFQALERRE---------LPVLQQLLGAKQPLMQQLE 56 (157)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHH
Confidence 44455555444 6777888888887776222 1267777777776555544
No 285
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=20.14 E-value=43 Score=39.98 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.6
Q ss_pred cCCCeEEEeeccCCCCCcccc
Q 005092 276 QRTKATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 276 ~G~N~tvfAYGqTGSGKTyTM 296 (715)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 589999999999999999885
No 286
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.11 E-value=41 Score=34.90 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=22.5
Q ss_pred hHHHHHHhhhhhHHHHhcCC-CeEEEeeccCCCCCcccc
Q 005092 259 NDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 296 (715)
Q Consensus 259 QeeVy~~~~~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 296 (715)
++++++. +...+-.|. .-.++-||+.|+|||.+.
T Consensus 7 ~~~~~~~----l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEK----LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHH----HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHH----HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4445443 333344553 446888999999999886
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=20.09 E-value=29 Score=31.38 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005092 281 TCFAYGQTGSGKTYTM 296 (715)
Q Consensus 281 tvfAYGqTGSGKTyTM 296 (715)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 288
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.06 E-value=4e+02 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005092 676 VSRLNAILSQKAAGIMQLQTQLAHFQKRLK 705 (715)
Q Consensus 676 V~~L~~ILs~Ka~~I~~Lq~rL~qfr~~L~ 705 (715)
...+..--+.+...+.+|+++...++.+|+
T Consensus 43 ~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 43 VQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444466677788888887777765
Done!