Query 005096
Match_columns 715
No_of_seqs 1169 out of 3456
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 17:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0284 Polyadenylation factor 100.0 1.9E-54 4.1E-59 438.0 23.6 373 69-442 22-394 (464)
2 KOG0271 Notchless-like WD40 re 100.0 1.7E-46 3.7E-51 377.0 26.4 328 59-426 109-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 8.7E-45 1.9E-49 364.8 30.1 323 136-468 107-472 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2E-44 4.4E-49 366.9 25.0 285 141-426 172-458 (459)
5 KOG0286 G-protein beta subunit 100.0 4.6E-41 9.9E-46 328.3 35.0 287 137-426 48-343 (343)
6 KOG0279 G protein beta subunit 100.0 2E-38 4.3E-43 308.2 33.5 291 135-428 6-313 (315)
7 KOG0285 Pleiotropic regulator 100.0 1.1E-37 2.5E-42 311.1 27.8 296 136-434 143-445 (460)
8 KOG0295 WD40 repeat-containing 100.0 7.7E-38 1.7E-42 313.7 25.7 290 136-427 100-405 (406)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-38 3.4E-43 324.0 20.6 246 137-383 210-458 (459)
10 cd00200 WD40 WD40 domain, foun 100.0 3.3E-36 7.1E-41 310.1 38.3 287 138-426 3-289 (289)
11 KOG0279 G protein beta subunit 100.0 1E-36 2.2E-41 296.4 29.6 292 60-385 10-313 (315)
12 KOG0273 Beta-transducin family 100.0 2.7E-36 5.9E-41 311.1 32.9 280 144-428 235-523 (524)
13 KOG0645 WD40 repeat protein [G 100.0 6.5E-36 1.4E-40 289.6 32.6 286 136-428 6-311 (312)
14 KOG0318 WD40 repeat stress pro 100.0 2.1E-35 4.6E-40 307.9 37.9 367 60-433 54-565 (603)
15 KOG0315 G-protein beta subunit 100.0 5.4E-36 1.2E-40 286.7 30.0 274 157-433 11-293 (311)
16 KOG0291 WD40-repeat-containing 100.0 7E-35 1.5E-39 314.7 41.2 344 85-432 204-554 (893)
17 KOG0318 WD40 repeat stress pro 100.0 7.3E-35 1.6E-39 303.9 38.8 291 136-428 182-602 (603)
18 KOG0263 Transcription initiati 100.0 6.1E-36 1.3E-40 326.6 28.8 248 140-388 374-652 (707)
19 KOG0266 WD40 repeat-containing 100.0 5.2E-35 1.1E-39 326.4 35.5 290 137-428 151-454 (456)
20 KOG0265 U5 snRNP-specific prot 100.0 4.2E-35 9.1E-40 287.7 29.3 286 139-427 42-337 (338)
21 KOG0281 Beta-TrCP (transducin 100.0 5.4E-37 1.2E-41 304.9 15.2 275 143-432 196-481 (499)
22 KOG0296 Angio-associated migra 100.0 3.1E-34 6.8E-39 288.0 31.8 288 137-428 57-398 (399)
23 KOG0315 G-protein beta subunit 100.0 1E-33 2.3E-38 271.0 31.0 289 83-407 11-309 (311)
24 KOG0286 G-protein beta subunit 100.0 5E-34 1.1E-38 279.0 29.0 286 59-383 49-343 (343)
25 KOG0273 Beta-transducin family 100.0 4.5E-34 9.8E-39 294.7 29.1 284 143-429 177-483 (524)
26 PLN00181 protein SPA1-RELATED; 100.0 6E-33 1.3E-37 331.5 42.9 285 139-427 478-792 (793)
27 KOG0319 WD40-repeat-containing 100.0 5.1E-34 1.1E-38 308.2 30.2 346 82-430 250-621 (775)
28 KOG0293 WD40 repeat-containing 100.0 1.8E-34 4E-39 292.8 24.8 291 137-430 217-515 (519)
29 KOG0316 Conserved WD40 repeat- 100.0 9E-34 2E-38 269.4 26.4 281 139-426 12-297 (307)
30 KOG0295 WD40 repeat-containing 100.0 1.8E-34 3.9E-39 289.5 22.5 270 82-384 120-405 (406)
31 KOG0291 WD40-repeat-containing 100.0 7.7E-33 1.7E-37 299.0 36.5 343 51-430 131-510 (893)
32 KOG0263 Transcription initiati 100.0 3.9E-34 8.5E-39 312.5 25.5 252 180-433 372-654 (707)
33 KOG0276 Vesicle coat complex C 100.0 1.2E-33 2.5E-38 299.5 26.7 285 138-424 7-295 (794)
34 KOG0285 Pleiotropic regulator 100.0 2.1E-33 4.6E-38 280.6 25.9 253 176-432 141-393 (460)
35 KOG0313 Microtubule binding pr 100.0 1E-32 2.2E-37 278.3 27.8 281 142-428 103-418 (423)
36 KOG0282 mRNA splicing factor [ 100.0 3.7E-34 8E-39 296.6 17.9 292 132-426 202-503 (503)
37 KOG0319 WD40-repeat-containing 100.0 6.2E-33 1.3E-37 299.8 26.7 320 132-460 135-602 (775)
38 KOG0284 Polyadenylation factor 100.0 2.2E-33 4.8E-38 285.1 21.9 272 185-464 95-367 (464)
39 KOG0281 Beta-TrCP (transducin 100.0 3E-34 6.5E-39 285.4 14.2 239 138-389 231-481 (499)
40 KOG0278 Serine/threonine kinas 100.0 2.5E-33 5.3E-38 268.3 19.1 288 139-431 9-300 (334)
41 KOG0306 WD40-repeat-containing 100.0 2.5E-32 5.5E-37 294.9 28.9 303 136-443 365-679 (888)
42 cd00200 WD40 WD40 domain, foun 100.0 1.2E-30 2.7E-35 268.5 34.9 244 139-383 46-289 (289)
43 KOG0643 Translation initiation 100.0 5.5E-31 1.2E-35 254.7 28.2 289 139-429 5-318 (327)
44 KOG0266 WD40 repeat-containing 100.0 3.4E-31 7.3E-36 295.8 30.8 248 137-385 196-454 (456)
45 KOG0275 Conserved WD40 repeat- 100.0 1.8E-32 4E-37 270.2 18.0 286 138-426 207-507 (508)
46 KOG0292 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 291.3 27.9 290 139-431 4-324 (1202)
47 KOG0277 Peroxisomal targeting 100.0 2E-31 4.3E-36 256.2 22.5 280 148-427 12-308 (311)
48 KOG0640 mRNA cleavage stimulat 100.0 4.8E-31 1E-35 259.4 22.9 295 133-428 101-426 (430)
49 KOG1407 WD40 repeat protein [F 100.0 3.2E-30 7E-35 248.8 27.4 277 138-419 14-293 (313)
50 KOG0973 Histone transcription 100.0 1.8E-30 3.8E-35 292.7 29.6 292 140-431 9-358 (942)
51 KOG0274 Cdc4 and related F-box 100.0 3.9E-30 8.5E-35 287.2 31.3 279 142-432 206-486 (537)
52 KOG1446 Histone H3 (Lys4) meth 100.0 6.1E-29 1.3E-33 246.9 35.4 288 139-431 9-306 (311)
53 KOG0276 Vesicle coat complex C 100.0 3.9E-30 8.5E-35 272.8 27.9 242 139-381 50-295 (794)
54 KOG0645 WD40 repeat protein [G 100.0 4.5E-29 9.7E-34 242.2 32.5 245 177-429 5-262 (312)
55 KOG0265 U5 snRNP-specific prot 100.0 5.9E-30 1.3E-34 251.5 26.7 252 179-432 40-300 (338)
56 KOG0293 WD40 repeat-containing 100.0 1.3E-30 2.8E-35 264.9 21.1 276 81-386 235-514 (519)
57 KOG0288 WD40 repeat protein Ti 100.0 5.4E-31 1.2E-35 268.2 18.2 284 138-426 169-459 (459)
58 KOG0268 Sof1-like rRNA process 100.0 2.5E-31 5.4E-36 266.6 14.9 288 137-432 59-349 (433)
59 KOG0292 Vesicle coat complex C 100.0 2.7E-29 5.8E-34 274.9 31.3 294 139-434 46-403 (1202)
60 KOG0282 mRNA splicing factor [ 100.0 1.4E-30 3E-35 270.2 20.1 288 60-383 209-503 (503)
61 KOG0305 Anaphase promoting com 100.0 1.6E-29 3.4E-34 272.8 29.1 280 145-430 178-463 (484)
62 KOG0310 Conserved WD40 repeat- 100.0 1.4E-29 3.1E-34 263.2 27.0 290 139-434 21-315 (487)
63 KOG0296 Angio-associated migra 100.0 5.4E-29 1.2E-33 250.4 29.1 245 138-385 100-398 (399)
64 KOG0306 WD40-repeat-containing 100.0 1.2E-28 2.6E-33 266.6 33.2 271 183-465 370-652 (888)
65 PLN00181 protein SPA1-RELATED; 100.0 2.2E-28 4.8E-33 292.3 39.1 262 165-430 457-740 (793)
66 KOG0316 Conserved WD40 repeat- 100.0 1.7E-29 3.6E-34 240.4 23.3 251 178-434 9-263 (307)
67 KOG0283 WD40 repeat-containing 100.0 2.1E-29 4.5E-34 277.9 26.7 299 130-432 252-580 (712)
68 KOG0639 Transducin-like enhanc 100.0 3E-29 6.6E-34 259.9 25.5 283 139-427 414-703 (705)
69 KOG0289 mRNA splicing factor [ 100.0 5.8E-29 1.3E-33 254.6 27.2 283 144-427 219-505 (506)
70 KOG0641 WD40 repeat protein [G 100.0 1.6E-27 3.5E-32 225.1 33.9 287 139-428 27-349 (350)
71 KOG0300 WD40 repeat-containing 100.0 5.4E-29 1.2E-33 245.3 22.5 293 136-431 140-479 (481)
72 PTZ00421 coronin; Provisional 100.0 1.8E-27 3.9E-32 265.5 36.7 280 146-428 22-331 (493)
73 KOG0274 Cdc4 and related F-box 100.0 3.8E-28 8.2E-33 271.3 30.7 264 133-406 238-503 (537)
74 KOG0299 U3 snoRNP-associated p 100.0 2.7E-28 5.8E-33 251.9 26.6 291 138-431 136-459 (479)
75 KOG0301 Phospholipase A2-activ 100.0 3.4E-28 7.4E-33 261.6 27.7 283 136-432 6-292 (745)
76 KOG0772 Uncharacterized conser 100.0 4.7E-28 1E-32 252.3 25.3 288 136-425 159-484 (641)
77 KOG0313 Microtubule binding pr 100.0 6.5E-28 1.4E-32 243.6 25.1 244 138-385 138-418 (423)
78 KOG0278 Serine/threonine kinas 100.0 5.6E-29 1.2E-33 238.5 15.6 246 138-388 53-300 (334)
79 KOG0308 Conserved WD40 repeat- 100.0 1.2E-28 2.7E-33 263.1 19.1 278 149-428 29-327 (735)
80 PTZ00420 coronin; Provisional 100.0 1.4E-26 3.1E-31 259.5 35.0 248 162-410 50-318 (568)
81 KOG0294 WD40 repeat-containing 100.0 3.7E-27 8E-32 233.2 26.3 244 139-388 38-284 (362)
82 KOG0647 mRNA export protein (c 100.0 2.9E-27 6.4E-32 232.7 25.3 270 142-417 25-312 (347)
83 KOG0277 Peroxisomal targeting 100.0 3.9E-28 8.4E-33 233.6 18.5 242 143-384 59-308 (311)
84 PTZ00421 coronin; Provisional 100.0 1.4E-26 3E-31 258.4 33.8 242 189-431 23-293 (493)
85 KOG0275 Conserved WD40 repeat- 100.0 2.6E-28 5.7E-33 241.0 17.5 249 185-434 212-473 (508)
86 KOG2096 WD40 repeat protein [G 100.0 5.7E-27 1.2E-31 231.6 26.8 294 129-426 71-400 (420)
87 KOG0294 WD40 repeat-containing 100.0 9.8E-27 2.1E-31 230.2 27.8 268 158-433 3-286 (362)
88 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3E-32 248.5 22.7 243 138-384 62-308 (487)
89 KOG1408 WD40 repeat protein [F 100.0 2E-27 4.3E-32 254.9 24.4 331 79-429 333-714 (1080)
90 KOG0305 Anaphase promoting com 100.0 4.1E-27 8.9E-32 254.0 26.7 240 144-387 217-463 (484)
91 KOG1063 RNA polymerase II elon 100.0 1.1E-26 2.3E-31 250.0 29.5 372 56-431 182-651 (764)
92 KOG1036 Mitotic spindle checkp 100.0 4.8E-26 1E-30 225.2 29.7 267 144-418 13-294 (323)
93 KOG0308 Conserved WD40 repeat- 100.0 1.3E-27 2.7E-32 255.4 20.0 320 83-429 38-394 (735)
94 KOG0973 Histone transcription 99.9 2.1E-26 4.5E-31 260.0 26.3 248 139-387 64-357 (942)
95 KOG1407 WD40 repeat protein [F 99.9 4.8E-26 1E-30 220.0 24.2 249 180-432 14-265 (313)
96 PTZ00420 coronin; Provisional 99.9 4.8E-25 1E-29 247.2 35.4 224 204-429 50-294 (568)
97 KOG0288 WD40 repeat protein Ti 99.9 6.9E-27 1.5E-31 238.4 17.8 240 138-382 213-458 (459)
98 KOG0650 WD40 repeat nucleolar 99.9 2.7E-26 5.8E-31 242.9 22.9 315 103-426 364-733 (733)
99 KOG0264 Nucleosome remodeling 99.9 4.1E-26 9E-31 236.1 23.0 246 183-428 121-404 (422)
100 KOG1274 WD40 repeat protein [G 99.9 2.3E-25 5E-30 246.6 29.8 277 141-425 10-297 (933)
101 KOG1446 Histone H3 (Lys4) meth 99.9 1.7E-24 3.7E-29 215.3 31.8 257 176-436 4-270 (311)
102 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.9E-24 8.6E-29 225.0 36.7 268 157-431 2-282 (300)
103 KOG0289 mRNA splicing factor [ 99.9 2.2E-25 4.8E-30 228.4 25.6 240 187-427 220-461 (506)
104 KOG0641 WD40 repeat protein [G 99.9 4E-24 8.6E-29 202.3 31.5 250 134-385 79-349 (350)
105 KOG1408 WD40 repeat protein [F 99.9 5.7E-26 1.2E-30 243.8 21.5 300 84-386 394-714 (1080)
106 KOG1539 WD repeat protein [Gen 99.9 1.2E-24 2.6E-29 238.4 32.0 341 83-427 125-647 (910)
107 KOG0264 Nucleosome remodeling 99.9 1.4E-25 3E-30 232.2 23.0 252 134-385 114-404 (422)
108 KOG0299 U3 snoRNP-associated p 99.9 3.6E-25 7.7E-30 228.9 25.0 254 179-435 135-417 (479)
109 KOG0643 Translation initiation 99.9 9.8E-25 2.1E-29 211.5 26.4 237 181-421 5-254 (327)
110 KOG0269 WD40 repeat-containing 99.9 4E-26 8.6E-31 248.3 18.5 284 144-428 39-340 (839)
111 KOG2106 Uncharacterized conser 99.9 1.7E-23 3.8E-28 217.9 36.9 360 57-427 96-520 (626)
112 KOG2048 WD40 repeat protein [G 99.9 3.7E-24 8.1E-29 230.4 31.5 281 144-429 25-320 (691)
113 KOG1332 Vesicle coat complex C 99.9 1.9E-25 4.1E-30 214.0 18.8 254 181-434 6-292 (299)
114 KOG0640 mRNA cleavage stimulat 99.9 2.6E-25 5.7E-30 219.0 19.5 297 74-385 116-426 (430)
115 KOG2055 WD40 repeat protein [G 99.9 2.2E-24 4.7E-29 222.9 25.3 283 144-428 213-512 (514)
116 KOG1332 Vesicle coat complex C 99.9 6.9E-25 1.5E-29 210.2 19.7 250 139-389 6-290 (299)
117 KOG0301 Phospholipase A2-activ 99.9 1.8E-24 4E-29 233.0 25.1 261 84-386 27-289 (745)
118 KOG0646 WD40 repeat protein [G 99.9 2.8E-24 6E-29 222.8 25.4 262 166-430 18-309 (476)
119 KOG1539 WD repeat protein [Gen 99.9 9.4E-24 2E-28 231.4 30.8 283 147-431 162-609 (910)
120 KOG0300 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 213.4 22.2 264 158-430 126-430 (481)
121 KOG0267 Microtubule severing p 99.9 3.5E-26 7.6E-31 246.8 9.7 256 157-420 5-260 (825)
122 KOG4283 Transcription-coupled 99.9 6.4E-24 1.4E-28 208.1 24.2 285 141-427 40-364 (397)
123 KOG0321 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 230.0 22.6 283 150-433 55-396 (720)
124 KOG0267 Microtubule severing p 99.9 8E-26 1.7E-30 244.1 10.5 236 140-376 24-259 (825)
125 KOG0646 WD40 repeat protein [G 99.9 2E-24 4.2E-29 223.9 20.3 241 144-385 81-350 (476)
126 KOG0772 Uncharacterized conser 99.9 3.8E-24 8.2E-29 223.3 22.2 257 176-433 157-450 (641)
127 KOG0283 WD40 repeat-containing 99.9 7.4E-24 1.6E-28 234.2 24.2 203 138-343 363-577 (712)
128 KOG1273 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 207.2 23.4 283 147-433 26-327 (405)
129 KOG1274 WD40 repeat protein [G 99.9 3.8E-23 8.2E-28 229.2 28.9 244 183-429 10-263 (933)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-22 1.2E-26 208.7 36.4 256 146-408 32-300 (300)
131 KOG0268 Sof1-like rRNA process 99.9 8.3E-25 1.8E-29 219.9 14.0 246 178-431 58-305 (433)
132 KOG2445 Nuclear pore complex c 99.9 5E-23 1.1E-27 203.4 24.9 265 140-429 9-319 (361)
133 KOG0639 Transducin-like enhanc 99.9 4.8E-24 1E-28 221.5 18.5 238 143-384 464-703 (705)
134 KOG1036 Mitotic spindle checkp 99.9 1.4E-22 2.9E-27 200.8 26.4 264 186-463 13-290 (323)
135 KOG0269 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 234.5 14.9 242 146-388 89-343 (839)
136 KOG0647 mRNA export protein (c 99.9 1.1E-22 2.3E-27 200.6 23.8 243 184-432 25-285 (347)
137 KOG2106 Uncharacterized conser 99.9 1.4E-21 3.1E-26 203.7 32.1 287 141-436 151-485 (626)
138 KOG4328 WD40 protein [Function 99.9 3.7E-22 8.1E-27 206.4 24.3 291 136-428 178-495 (498)
139 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-22 3.8E-27 209.8 21.0 261 147-410 37-305 (673)
140 KOG0270 WD40 repeat-containing 99.9 4.4E-22 9.6E-27 205.3 23.5 280 148-430 129-451 (463)
141 KOG4283 Transcription-coupled 99.9 2.5E-22 5.4E-27 197.0 19.3 215 223-438 38-286 (397)
142 KOG1063 RNA polymerase II elon 99.9 1.7E-21 3.7E-26 210.1 27.4 317 135-455 45-417 (764)
143 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-22 7.4E-27 207.6 20.7 270 161-432 7-284 (673)
144 KOG1034 Transcriptional repres 99.9 1.2E-21 2.7E-26 195.0 23.4 291 134-427 28-382 (385)
145 KOG1009 Chromatin assembly com 99.9 1.5E-21 3.3E-26 199.4 24.1 290 143-433 12-377 (434)
146 KOG0302 Ribosome Assembly prot 99.9 7.7E-22 1.7E-26 199.6 21.5 245 137-381 144-435 (440)
147 KOG2048 WD40 repeat protein [G 99.9 9E-21 2E-25 204.5 31.1 244 185-432 24-279 (691)
148 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-19 2.3E-24 196.7 39.8 291 139-431 60-362 (466)
149 KOG0307 Vesicle coat complex C 99.9 1E-22 2.2E-27 231.0 16.3 282 148-431 10-330 (1049)
150 KOG2096 WD40 repeat protein [G 99.9 4E-21 8.7E-26 190.4 24.7 283 180-471 80-397 (420)
151 KOG1445 Tumor-specific antigen 99.9 1.4E-21 3E-26 207.8 20.9 121 139-259 74-201 (1012)
152 COG2319 FOG: WD40 repeat [Gene 99.9 4.8E-19 1.1E-23 191.6 41.4 290 135-429 146-443 (466)
153 KOG0307 Vesicle coat complex C 99.9 3.5E-22 7.6E-27 226.8 16.0 245 144-388 64-330 (1049)
154 KOG0302 Ribosome Assembly prot 99.9 5.1E-21 1.1E-25 193.7 22.5 243 183-426 148-437 (440)
155 KOG1538 Uncharacterized conser 99.9 4.6E-21 1E-25 204.8 23.3 272 146-428 14-293 (1081)
156 KOG2055 WD40 repeat protein [G 99.9 5.6E-21 1.2E-25 197.8 22.5 245 139-385 252-512 (514)
157 KOG2919 Guanine nucleotide-bin 99.9 3.8E-20 8.2E-25 184.0 25.5 282 143-429 48-368 (406)
158 KOG0321 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 204.5 20.9 250 139-388 95-394 (720)
159 KOG0270 WD40 repeat-containing 99.9 3.9E-21 8.4E-26 198.4 18.9 244 148-391 177-455 (463)
160 KOG1273 WD40 repeat protein [G 99.9 1E-19 2.2E-24 180.3 24.1 240 189-430 26-282 (405)
161 KOG4328 WD40 protein [Function 99.9 2.8E-20 6.1E-25 192.5 20.4 258 171-429 171-451 (498)
162 KOG0644 Uncharacterized conser 99.9 2.4E-21 5.2E-26 211.9 12.3 286 137-434 183-474 (1113)
163 KOG0650 WD40 repeat nucleolar 99.8 4.2E-20 9.2E-25 196.3 20.8 252 178-433 392-685 (733)
164 KOG1188 WD40 repeat protein [G 99.8 6.7E-20 1.5E-24 183.8 19.6 271 157-427 41-345 (376)
165 KOG4227 WD40 repeat protein [G 99.8 4E-19 8.6E-24 180.1 24.3 294 133-428 45-387 (609)
166 KOG0649 WD40 repeat protein [G 99.8 2E-18 4.3E-23 165.8 25.9 270 145-426 11-314 (325)
167 KOG2919 Guanine nucleotide-bin 99.8 7.1E-19 1.5E-23 175.0 22.3 243 188-432 51-331 (406)
168 KOG1445 Tumor-specific antigen 99.8 4.1E-19 9E-24 189.1 22.1 180 248-429 601-799 (1012)
169 KOG1007 WD repeat protein TSSC 99.8 8E-19 1.7E-23 172.2 22.1 263 165-429 39-362 (370)
170 KOG1007 WD repeat protein TSSC 99.8 3.4E-19 7.3E-24 174.8 19.3 247 137-385 56-361 (370)
171 KOG0322 G-protein beta subunit 99.8 1.7E-19 3.8E-24 175.0 16.5 282 139-427 9-322 (323)
172 KOG0290 Conserved WD40 repeat- 99.8 2E-18 4.3E-23 169.7 23.7 276 146-425 46-362 (364)
173 KOG0642 Cell-cycle nuclear pro 99.8 8.7E-20 1.9E-24 193.5 14.9 252 139-392 289-568 (577)
174 KOG1517 Guanine nucleotide bin 99.8 1.9E-18 4.1E-23 193.6 25.5 289 140-430 1060-1383(1387)
175 KOG1963 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 187.1 29.8 287 142-430 203-540 (792)
176 KOG1034 Transcriptional repres 99.8 4.8E-19 1E-23 176.7 18.1 241 142-385 87-383 (385)
177 PRK11028 6-phosphogluconolacto 99.8 4.6E-17 1E-21 175.1 33.2 269 160-431 6-307 (330)
178 KOG2110 Uncharacterized conser 99.8 1E-16 2.3E-21 162.7 33.1 280 143-430 4-332 (391)
179 KOG1524 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 182.0 20.1 263 142-424 12-282 (737)
180 KOG1587 Cytoplasmic dynein int 99.8 1.6E-17 3.5E-22 184.8 29.2 264 166-429 222-517 (555)
181 KOG1009 Chromatin assembly com 99.8 6E-18 1.3E-22 173.3 23.2 280 84-388 28-375 (434)
182 KOG0303 Actin-binding protein 99.8 6.5E-18 1.4E-22 172.1 23.0 207 223-431 76-297 (472)
183 KOG1538 Uncharacterized conser 99.8 5.3E-18 1.1E-22 181.6 23.3 238 138-384 47-292 (1081)
184 KOG1523 Actin-related protein 99.8 1.6E-17 3.5E-22 165.6 23.2 232 143-376 9-269 (361)
185 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-18 2.8E-23 184.7 15.0 251 178-431 286-564 (577)
186 KOG0303 Actin-binding protein 99.8 2.2E-17 4.9E-22 168.2 22.9 246 181-429 76-338 (472)
187 KOG2445 Nuclear pore complex c 99.8 3.8E-17 8.3E-22 162.0 23.9 205 224-429 9-257 (361)
188 KOG1334 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 179.7 14.0 291 136-427 134-465 (559)
189 KOG1963 WD40 repeat protein [G 99.8 1.9E-16 4.1E-21 176.3 29.6 301 131-433 44-492 (792)
190 KOG0771 Prolactin regulatory e 99.8 5.3E-17 1.2E-21 167.6 23.1 197 232-430 148-356 (398)
191 KOG2110 Uncharacterized conser 99.8 2.9E-16 6.4E-21 159.4 26.8 238 186-431 5-251 (391)
192 PRK11028 6-phosphogluconolacto 99.8 1.5E-15 3.3E-20 163.3 33.7 239 145-387 35-306 (330)
193 KOG0649 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 151.4 23.7 231 188-429 12-275 (325)
194 KOG1240 Protein kinase contain 99.8 2.5E-16 5.5E-21 179.5 27.8 291 135-426 1039-1431(1431)
195 KOG2111 Uncharacterized conser 99.7 2.6E-15 5.7E-20 149.9 30.8 278 146-429 7-323 (346)
196 PRK01742 tolB translocation pr 99.7 2.4E-16 5.3E-21 175.4 25.2 235 165-409 183-426 (429)
197 KOG0290 Conserved WD40 repeat- 99.7 1.4E-16 3.1E-21 156.7 20.3 238 136-376 88-357 (364)
198 PRK01742 tolB translocation pr 99.7 2.2E-16 4.7E-21 175.8 24.1 218 139-364 198-425 (429)
199 KOG1272 WD40-repeat-containing 99.7 8.9E-18 1.9E-22 174.3 11.8 273 144-424 129-405 (545)
200 KOG2321 WD40 repeat protein [G 99.7 2E-16 4.3E-21 168.0 21.5 294 142-440 49-355 (703)
201 KOG1188 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 158.4 19.4 230 199-428 41-297 (376)
202 KOG1524 WD40 repeat-containing 99.7 7.6E-16 1.7E-20 162.1 22.5 209 156-382 75-283 (737)
203 KOG0771 Prolactin regulatory e 99.7 1.6E-16 3.5E-21 164.1 15.8 195 148-343 148-355 (398)
204 KOG2394 WD40 protein DMR-N9 [G 99.7 5.3E-16 1.1E-20 163.8 19.8 218 146-364 125-384 (636)
205 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3.1E-20 169.3 24.0 243 143-386 241-517 (555)
206 KOG4227 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 154.8 19.3 251 179-432 49-326 (609)
207 KOG0644 Uncharacterized conser 99.7 2.5E-17 5.4E-22 180.8 7.4 244 177-432 181-430 (1113)
208 KOG1523 Actin-related protein 99.7 4.5E-15 9.8E-20 148.2 21.8 245 184-430 8-280 (361)
209 PF02239 Cytochrom_D1: Cytochr 99.7 3.6E-14 7.8E-19 153.8 30.3 285 147-434 39-353 (369)
210 KOG1517 Guanine nucleotide bin 99.7 6.3E-15 1.4E-19 165.8 24.8 243 188-431 1066-1336(1387)
211 KOG1310 WD40 repeat protein [G 99.7 4.6E-16 1E-20 164.1 14.0 211 136-346 42-307 (758)
212 KOG2139 WD40 repeat protein [G 99.7 2.4E-14 5.2E-19 144.9 25.7 280 143-428 97-431 (445)
213 KOG1240 Protein kinase contain 99.7 9.6E-15 2.1E-19 166.8 25.5 259 175-433 1037-1339(1431)
214 KOG4497 Uncharacterized conser 99.7 6.3E-15 1.4E-19 147.3 21.1 273 149-428 13-391 (447)
215 KOG2111 Uncharacterized conser 99.7 3.5E-14 7.7E-19 141.9 26.4 240 188-433 7-261 (346)
216 KOG1310 WD40 repeat protein [G 99.7 4.4E-16 9.5E-21 164.3 13.4 245 176-434 40-309 (758)
217 KOG1272 WD40-repeat-containing 99.7 1.8E-16 4E-21 164.6 9.3 235 186-429 129-363 (545)
218 KOG4497 Uncharacterized conser 99.6 6.8E-14 1.5E-18 140.0 24.0 274 145-424 49-428 (447)
219 PRK03629 tolB translocation pr 99.6 6.9E-14 1.5E-18 155.6 27.1 219 140-364 194-427 (429)
220 KOG3881 Uncharacterized conser 99.6 2.7E-14 5.9E-19 146.2 21.5 261 143-409 54-342 (412)
221 PRK02889 tolB translocation pr 99.6 5E-14 1.1E-18 156.8 25.9 237 166-409 176-425 (427)
222 KOG2394 WD40 protein DMR-N9 [G 99.6 6.1E-15 1.3E-19 155.8 17.0 170 153-322 182-384 (636)
223 PRK04922 tolB translocation pr 99.6 9.7E-14 2.1E-18 154.9 27.9 234 166-408 184-432 (433)
224 PRK02889 tolB translocation pr 99.6 8.2E-14 1.8E-18 155.0 26.4 219 140-364 191-424 (427)
225 PRK04922 tolB translocation pr 99.6 1.4E-13 3E-18 153.7 27.4 219 140-364 199-432 (433)
226 KOG0322 G-protein beta subunit 99.6 2E-14 4.3E-19 140.1 17.3 238 142-384 54-322 (323)
227 PRK03629 tolB translocation pr 99.6 3.1E-13 6.7E-18 150.4 29.5 234 166-408 179-427 (429)
228 PRK05137 tolB translocation pr 99.6 3.1E-13 6.6E-18 151.0 29.2 233 166-408 182-432 (435)
229 KOG1354 Serine/threonine prote 99.6 1E-13 2.2E-18 139.5 21.2 274 143-431 24-362 (433)
230 KOG2139 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 138.9 22.1 234 186-421 98-368 (445)
231 PRK05137 tolB translocation pr 99.6 5.1E-13 1.1E-17 149.2 27.2 219 139-364 196-432 (435)
232 KOG0280 Uncharacterized conser 99.6 6.2E-13 1.4E-17 131.7 22.8 261 165-426 45-331 (339)
233 KOG2315 Predicted translation 99.6 1.9E-12 4.1E-17 138.3 28.0 272 144-428 34-390 (566)
234 PF02239 Cytochrom_D1: Cytochr 99.6 3.4E-12 7.4E-17 138.4 29.8 268 160-430 10-304 (369)
235 KOG2321 WD40 repeat protein [G 99.5 4.5E-13 9.8E-18 142.7 21.4 245 185-434 50-308 (703)
236 PF10282 Lactonase: Lactonase, 99.5 6.3E-11 1.4E-15 128.2 38.8 272 159-431 2-325 (345)
237 KOG3881 Uncharacterized conser 99.5 7.2E-13 1.6E-17 135.9 21.0 240 186-429 55-321 (412)
238 TIGR02800 propeller_TolB tol-p 99.5 3.9E-12 8.5E-17 141.3 28.7 204 166-376 170-385 (417)
239 KOG1409 Uncharacterized conser 99.5 6.1E-13 1.3E-17 134.2 19.5 246 137-386 17-271 (404)
240 KOG0974 WD-repeat protein WDR6 99.5 4.1E-13 8.8E-18 152.3 19.5 275 146-432 9-292 (967)
241 PRK00178 tolB translocation pr 99.5 7.8E-12 1.7E-16 139.6 29.6 233 167-408 180-427 (430)
242 PF10282 Lactonase: Lactonase, 99.5 1.2E-10 2.7E-15 126.0 37.0 261 145-406 37-345 (345)
243 COG5354 Uncharacterized protei 99.5 6.1E-12 1.3E-16 132.9 25.4 277 143-429 31-396 (561)
244 PF08662 eIF2A: Eukaryotic tra 99.5 2.9E-12 6.3E-17 126.6 21.3 156 190-351 9-187 (194)
245 KOG2041 WD40 repeat protein [G 99.5 5.8E-12 1.3E-16 136.8 25.0 306 143-454 13-395 (1189)
246 KOG1334 WD40 repeat protein [G 99.5 3E-13 6.5E-18 141.7 14.3 254 176-430 132-426 (559)
247 PF08662 eIF2A: Eukaryotic tra 99.5 3.7E-12 8.1E-17 125.8 21.1 155 148-308 9-186 (194)
248 PRK04792 tolB translocation pr 99.5 1.8E-11 3.8E-16 137.0 28.9 234 167-408 199-446 (448)
249 PRK00178 tolB translocation pr 99.5 1.1E-11 2.5E-16 138.3 27.0 219 140-364 194-427 (430)
250 KOG0974 WD-repeat protein WDR6 99.5 4E-12 8.6E-17 144.4 22.3 199 142-343 85-289 (967)
251 TIGR02800 propeller_TolB tol-p 99.5 1.2E-11 2.6E-16 137.5 26.0 217 140-362 185-416 (417)
252 TIGR03300 assembly_YfgL outer 99.5 4.9E-11 1.1E-15 130.8 30.4 262 156-432 65-342 (377)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 2E-10 4.4E-15 122.1 32.5 258 166-431 27-333 (352)
254 PRK01029 tolB translocation pr 99.4 6.3E-11 1.4E-15 131.6 30.0 238 166-409 165-425 (428)
255 PRK04792 tolB translocation pr 99.4 1.8E-11 3.9E-16 136.9 25.7 217 142-364 215-446 (448)
256 KOG4547 WD40 repeat-containing 99.4 1.9E-11 4.2E-16 131.7 24.4 188 197-386 4-221 (541)
257 KOG4547 WD40 repeat-containing 99.4 2E-11 4.3E-16 131.6 24.2 188 154-343 3-221 (541)
258 TIGR03300 assembly_YfgL outer 99.4 1.6E-10 3.5E-15 126.7 30.6 255 155-425 104-376 (377)
259 PRK01029 tolB translocation pr 99.4 5.5E-11 1.2E-15 132.0 27.0 222 140-364 180-424 (428)
260 PF04762 IKI3: IKI3 family; I 99.4 3.6E-10 7.9E-15 135.2 35.3 286 142-431 73-459 (928)
261 KOG1409 Uncharacterized conser 99.4 7.5E-12 1.6E-16 126.4 17.1 252 177-432 15-274 (404)
262 KOG2314 Translation initiation 99.4 7.3E-11 1.6E-15 125.7 25.0 279 147-429 213-526 (698)
263 COG4946 Uncharacterized protei 99.4 8.9E-10 1.9E-14 115.5 30.1 172 155-331 331-507 (668)
264 KOG2314 Translation initiation 99.3 2.5E-10 5.5E-15 121.6 24.9 277 146-427 251-572 (698)
265 KOG4190 Uncharacterized conser 99.3 5.1E-12 1.1E-16 133.6 11.2 281 138-425 729-1033(1034)
266 COG2706 3-carboxymuconate cycl 99.3 1E-08 2.2E-13 105.4 33.4 265 142-407 37-345 (346)
267 KOG1064 RAVE (regulator of V-A 99.3 1.3E-11 2.9E-16 145.6 13.4 202 137-351 2201-2407(2439)
268 KOG0309 Conserved WD40 repeat- 99.3 1.7E-11 3.6E-16 134.0 13.3 285 143-428 23-339 (1081)
269 COG5170 CDC55 Serine/threonine 99.3 5.6E-11 1.2E-15 118.5 15.8 277 143-431 25-370 (460)
270 KOG0280 Uncharacterized conser 99.3 3E-10 6.4E-15 112.9 20.8 226 206-433 44-289 (339)
271 KOG2041 WD40 repeat protein [G 99.3 2.4E-10 5.1E-15 124.6 21.3 245 135-384 62-336 (1189)
272 COG2706 3-carboxymuconate cycl 99.3 1.4E-08 3.1E-13 104.3 32.8 269 165-434 15-327 (346)
273 KOG1354 Serine/threonine prote 99.3 1.2E-10 2.5E-15 117.8 17.2 235 186-434 25-307 (433)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 4E-09 8.6E-14 112.3 29.2 237 152-393 53-338 (352)
275 KOG1912 WD40 repeat protein [G 99.3 8.8E-10 1.9E-14 121.5 24.5 289 138-428 49-551 (1062)
276 PF04762 IKI3: IKI3 family; I 99.2 8.8E-09 1.9E-13 123.5 33.5 284 143-430 119-521 (928)
277 KOG4190 Uncharacterized conser 99.2 1.9E-11 4E-16 129.5 9.4 240 179-427 728-987 (1034)
278 PLN02919 haloacid dehalogenase 99.2 8.6E-09 1.9E-13 125.8 33.5 239 148-389 571-892 (1057)
279 KOG4532 WD40-like repeat conta 99.2 1.5E-09 3.3E-14 106.5 21.0 209 156-364 84-312 (344)
280 KOG1064 RAVE (regulator of V-A 99.2 5.4E-11 1.2E-15 140.7 12.8 197 183-394 2205-2407(2439)
281 PRK11138 outer membrane biogen 99.2 6.5E-09 1.4E-13 114.7 27.7 259 155-427 119-393 (394)
282 PLN02919 haloacid dehalogenase 99.2 1.7E-08 3.8E-13 123.1 33.3 238 190-431 571-891 (1057)
283 KOG1912 WD40 repeat protein [G 99.2 1.6E-09 3.4E-14 119.5 21.5 281 147-429 18-365 (1062)
284 PRK04043 tolB translocation pr 99.2 1.8E-08 4E-13 111.3 29.9 211 166-386 169-401 (419)
285 PRK11138 outer membrane biogen 99.2 9.5E-09 2.1E-13 113.4 27.6 263 155-430 68-355 (394)
286 PF08450 SGL: SMP-30/Gluconola 99.2 4.6E-08 1E-12 100.6 30.4 218 149-373 4-244 (246)
287 KOG4532 WD40-like repeat conta 99.2 4.5E-09 9.9E-14 103.3 21.2 231 197-428 83-331 (344)
288 PRK04043 tolB translocation pr 99.2 1.4E-08 3.1E-13 112.2 27.6 191 146-343 189-401 (419)
289 PF13360 PQQ_2: PQQ-like domai 99.1 1.7E-08 3.8E-13 102.8 25.3 218 165-391 2-236 (238)
290 KOG0309 Conserved WD40 repeat- 99.1 6.7E-10 1.5E-14 121.6 14.1 272 186-459 24-311 (1081)
291 COG4946 Uncharacterized protei 99.1 4.4E-08 9.4E-13 103.1 26.5 225 139-370 259-503 (668)
292 KOG2315 Predicted translation 99.1 9.1E-09 2E-13 110.6 21.6 250 148-409 129-411 (566)
293 PF13360 PQQ_2: PQQ-like domai 99.1 8.2E-08 1.8E-12 97.8 27.2 215 206-430 1-232 (238)
294 KOG1832 HIV-1 Vpr-binding prot 99.1 2.1E-10 4.6E-15 127.4 7.6 213 135-364 1092-1311(1516)
295 PF08450 SGL: SMP-30/Gluconola 99.1 4.2E-07 9.2E-12 93.4 31.8 219 190-417 3-244 (246)
296 KOG3914 WD repeat protein WDR4 99.1 2.8E-09 6E-14 110.5 14.7 161 146-309 64-232 (390)
297 KOG4714 Nucleoporin [Nuclear s 99.0 3.1E-09 6.6E-14 104.1 13.8 253 147-426 39-316 (319)
298 KOG0882 Cyclophilin-related pe 99.0 8.6E-09 1.9E-13 107.8 17.8 280 142-425 7-369 (558)
299 COG5354 Uncharacterized protei 99.0 5.8E-08 1.3E-12 103.3 22.9 253 169-428 15-306 (561)
300 KOG4649 PQQ (pyrrolo-quinoline 99.0 5.6E-07 1.2E-11 88.6 27.6 263 155-429 62-352 (354)
301 PF07433 DUF1513: Protein of u 99.0 6E-07 1.3E-11 92.6 28.7 227 146-379 6-279 (305)
302 KOG3914 WD repeat protein WDR4 99.0 9.3E-09 2E-13 106.6 15.0 162 188-351 64-232 (390)
303 KOG1275 PAB-dependent poly(A) 99.0 2.2E-08 4.8E-13 112.6 18.8 183 239-426 146-340 (1118)
304 KOG1920 IkappaB kinase complex 99.0 2.1E-07 4.5E-12 108.2 26.5 238 143-384 67-364 (1265)
305 COG5170 CDC55 Serine/threonine 98.9 1.1E-08 2.4E-13 102.3 13.3 239 186-435 26-316 (460)
306 PF15492 Nbas_N: Neuroblastoma 98.9 1.3E-06 2.9E-11 87.6 26.6 241 192-447 3-276 (282)
307 PF15492 Nbas_N: Neuroblastoma 98.9 1.7E-06 3.8E-11 86.8 27.0 228 150-389 3-263 (282)
308 PF00930 DPPIV_N: Dipeptidyl p 98.9 6.6E-07 1.4E-11 97.2 24.9 262 153-417 1-346 (353)
309 PF07433 DUF1513: Protein of u 98.9 3E-06 6.6E-11 87.5 28.0 233 188-429 6-284 (305)
310 cd00216 PQQ_DH Dehydrogenases 98.8 1.2E-06 2.6E-11 99.2 27.4 266 156-432 61-428 (488)
311 KOG1920 IkappaB kinase complex 98.8 1.8E-06 3.8E-11 100.8 28.1 237 186-427 68-364 (1265)
312 KOG4714 Nucleoporin [Nuclear s 98.8 1.8E-08 3.8E-13 98.8 10.2 149 281-429 100-255 (319)
313 KOG2066 Vacuolar assembly/sort 98.8 1.4E-07 2.9E-12 105.5 18.3 182 186-385 39-233 (846)
314 KOG1832 HIV-1 Vpr-binding prot 98.8 2.8E-09 6.1E-14 118.8 4.0 197 176-388 1091-1294(1516)
315 KOG1275 PAB-dependent poly(A) 98.8 1.5E-07 3.3E-12 106.1 17.3 182 197-384 146-341 (1118)
316 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.7E-12 99.3 15.5 210 139-350 48-313 (558)
317 KOG2114 Vacuolar assembly/sort 98.8 9.4E-07 2E-11 99.6 23.1 207 151-359 30-261 (933)
318 KOG1645 RING-finger-containing 98.8 5.8E-07 1.2E-11 93.3 18.8 255 168-429 175-462 (463)
319 KOG2114 Vacuolar assembly/sort 98.7 1.2E-06 2.6E-11 98.8 22.0 205 193-400 30-258 (933)
320 KOG3621 WD40 repeat-containing 98.7 1.1E-06 2.5E-11 97.2 20.6 155 144-301 33-198 (726)
321 cd00216 PQQ_DH Dehydrogenases 98.7 8.7E-06 1.9E-10 92.3 28.2 229 157-395 111-434 (488)
322 KOG1645 RING-finger-containing 98.7 6.6E-07 1.4E-11 92.9 16.5 242 139-385 188-461 (463)
323 KOG2066 Vacuolar assembly/sort 98.7 6.5E-07 1.4E-11 100.2 17.0 182 144-342 39-233 (846)
324 PF06433 Me-amine-dh_H: Methyl 98.7 3.3E-05 7.1E-10 80.9 28.5 243 149-395 40-330 (342)
325 KOG2695 WD40 repeat protein [G 98.6 6.9E-08 1.5E-12 98.2 7.9 147 161-309 229-385 (425)
326 KOG3617 WD40 and TPR repeat-co 98.6 1.5E-06 3.2E-11 97.3 18.6 268 148-429 19-334 (1416)
327 KOG4649 PQQ (pyrrolo-quinoline 98.6 4.4E-05 9.4E-10 75.5 26.1 258 157-428 24-300 (354)
328 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.7E-12 96.4 8.6 158 192-352 217-386 (425)
329 PF00930 DPPIV_N: Dipeptidyl p 98.6 2E-05 4.3E-10 85.7 26.7 234 195-430 1-315 (353)
330 PF14583 Pectate_lyase22: Olig 98.6 2.6E-05 5.6E-10 83.1 26.1 276 148-429 39-382 (386)
331 PRK02888 nitrous-oxide reducta 98.6 1.2E-05 2.6E-10 90.3 24.6 222 155-386 140-405 (635)
332 KOG1008 Uncharacterized conser 98.5 4.3E-08 9.3E-13 106.8 3.6 239 187-428 57-335 (783)
333 PF04053 Coatomer_WDAD: Coatom 98.5 2.6E-05 5.7E-10 86.3 25.5 226 181-429 27-263 (443)
334 KOG1008 Uncharacterized conser 98.5 5.5E-08 1.2E-12 105.9 4.0 257 143-407 55-352 (783)
335 PRK02888 nitrous-oxide reducta 98.5 2.4E-05 5.2E-10 87.9 24.8 263 159-429 69-405 (635)
336 PF06433 Me-amine-dh_H: Methyl 98.5 0.00028 6.2E-09 74.0 30.5 258 166-430 17-322 (342)
337 PF04053 Coatomer_WDAD: Coatom 98.5 2.2E-05 4.8E-10 86.9 23.6 222 142-385 30-262 (443)
338 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.00017 3.7E-09 82.2 30.2 189 156-347 69-338 (527)
339 PF11768 DUF3312: Protein of u 98.4 0.00026 5.7E-09 78.0 29.5 120 271-394 206-338 (545)
340 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00055 1.2E-08 75.7 32.5 207 150-364 34-269 (410)
341 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.00014 3.1E-09 82.9 28.4 236 156-395 120-500 (527)
342 PF08596 Lgl_C: Lethal giant l 98.4 5.8E-05 1.3E-09 82.5 23.9 207 146-353 3-301 (395)
343 KOG3617 WD40 and TPR repeat-co 98.4 3.4E-06 7.4E-11 94.4 13.9 259 147-417 62-374 (1416)
344 PF02897 Peptidase_S9_N: Proly 98.4 0.00027 5.9E-09 78.6 29.6 240 146-389 125-408 (414)
345 COG0823 TolB Periplasmic compo 98.3 5.3E-05 1.1E-09 83.7 21.7 176 167-346 174-362 (425)
346 COG0823 TolB Periplasmic compo 98.3 6.8E-05 1.5E-09 82.8 22.5 202 210-418 175-389 (425)
347 COG3391 Uncharacterized conser 98.3 0.00089 1.9E-08 73.5 30.9 261 168-431 13-286 (381)
348 PF11768 DUF3312: Protein of u 98.3 0.00048 1E-08 76.0 27.9 115 313-431 206-332 (545)
349 PF00780 CNH: CNH domain; Int 98.3 0.00049 1.1E-08 71.9 27.2 222 154-391 5-261 (275)
350 KOG3621 WD40 repeat-containing 98.3 3.6E-05 7.8E-10 85.6 18.2 154 186-342 33-197 (726)
351 PF06977 SdiA-regulated: SdiA- 98.2 0.00089 1.9E-08 68.4 26.3 200 137-339 14-247 (248)
352 PF06977 SdiA-regulated: SdiA- 98.2 0.0005 1.1E-08 70.1 24.0 198 181-382 16-247 (248)
353 COG3391 Uncharacterized conser 98.2 0.0015 3.2E-08 71.8 29.4 260 146-409 32-309 (381)
354 PF02897 Peptidase_S9_N: Proly 98.2 0.0012 2.6E-08 73.3 29.2 238 189-430 126-406 (414)
355 PF00400 WD40: WD domain, G-be 98.2 4.1E-06 8.8E-11 59.4 6.1 36 137-172 4-39 (39)
356 COG1506 DAP2 Dipeptidyl aminop 98.2 0.00057 1.2E-08 79.9 26.8 304 182-522 55-409 (620)
357 COG3386 Gluconolactonase [Carb 98.2 0.00087 1.9E-08 70.8 25.0 216 150-371 30-271 (307)
358 PF00400 WD40: WD domain, G-be 98.2 6.4E-06 1.4E-10 58.4 6.3 38 177-214 2-39 (39)
359 PF04841 Vps16_N: Vps16, N-ter 98.2 0.00092 2E-08 74.0 26.3 207 209-426 62-285 (410)
360 PF00780 CNH: CNH domain; Int 98.1 0.0013 2.9E-08 68.6 26.5 219 196-430 5-257 (275)
361 PF03178 CPSF_A: CPSF A subuni 98.1 0.00041 8.9E-09 74.3 22.8 211 166-382 2-262 (321)
362 PF08553 VID27: VID27 cytoplas 98.1 0.0006 1.3E-08 79.6 24.8 143 197-341 492-646 (794)
363 KOG1897 Damage-specific DNA bi 98.1 0.0066 1.4E-07 70.5 30.9 187 252-443 752-957 (1096)
364 PF14583 Pectate_lyase22: Olig 98.0 0.0044 9.4E-08 66.4 27.5 245 172-420 16-304 (386)
365 PF03178 CPSF_A: CPSF A subuni 98.0 0.0014 2.9E-08 70.3 24.1 211 209-425 3-262 (321)
366 PF14870 PSII_BNR: Photosynthe 98.0 0.008 1.7E-07 63.2 28.9 271 143-425 15-301 (302)
367 PF08596 Lgl_C: Lethal giant l 98.0 0.0006 1.3E-08 74.6 21.4 238 188-427 3-334 (395)
368 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0027 5.9E-08 69.4 25.7 89 149-238 6-118 (415)
369 PF08553 VID27: VID27 cytoplas 98.0 0.00037 8.1E-09 81.3 19.8 217 247-467 501-762 (794)
370 KOG1897 Damage-specific DNA bi 98.0 0.017 3.6E-07 67.3 31.8 284 142-431 528-901 (1096)
371 PRK10115 protease 2; Provision 97.9 0.026 5.7E-07 66.7 33.7 238 145-388 127-397 (686)
372 COG3386 Gluconolactonase [Carb 97.9 0.0081 1.8E-07 63.5 26.2 218 192-417 30-274 (307)
373 KOG4499 Ca2+-binding protein R 97.8 0.0035 7.6E-08 61.6 20.0 214 157-373 28-272 (310)
374 PRK13616 lipoprotein LpqB; Pro 97.8 0.0022 4.7E-08 73.9 21.8 183 229-422 350-562 (591)
375 PHA02713 hypothetical protein; 97.8 0.0013 2.9E-08 75.7 20.1 215 167-389 273-537 (557)
376 PRK10115 protease 2; Provision 97.8 0.035 7.7E-07 65.6 31.6 237 187-429 127-395 (686)
377 PF05096 Glu_cyclase_2: Glutam 97.7 0.0095 2E-07 60.7 22.8 180 189-373 47-249 (264)
378 COG3204 Uncharacterized protei 97.7 0.0076 1.6E-07 61.5 21.3 168 182-350 81-270 (316)
379 PRK13616 lipoprotein LpqB; Pro 97.7 0.0021 4.5E-08 74.1 19.7 183 145-338 350-564 (591)
380 PF14870 PSII_BNR: Photosynthe 97.7 0.024 5.1E-07 59.7 25.6 227 146-382 63-301 (302)
381 PRK13684 Ycf48-like protein; P 97.7 0.043 9.2E-07 59.1 28.0 271 144-427 45-330 (334)
382 COG3490 Uncharacterized protei 97.6 0.02 4.4E-07 58.0 22.4 235 189-428 70-348 (366)
383 COG5276 Uncharacterized conser 97.6 0.069 1.5E-06 54.5 26.2 195 185-388 85-288 (370)
384 PF05694 SBP56: 56kDa selenium 97.6 0.083 1.8E-06 57.3 28.5 221 197-417 86-392 (461)
385 PF05096 Glu_cyclase_2: Glutam 97.6 0.048 1E-06 55.6 25.5 185 142-331 42-249 (264)
386 COG3490 Uncharacterized protei 97.6 0.018 4E-07 58.2 21.5 232 147-383 70-346 (366)
387 PF05694 SBP56: 56kDa selenium 97.5 0.055 1.2E-06 58.6 26.1 189 155-343 86-343 (461)
388 KOG2444 WD40 repeat protein [G 97.5 0.00011 2.5E-09 71.8 5.1 140 201-343 33-178 (238)
389 KOG2395 Protein involved in va 97.5 0.0026 5.6E-08 69.1 15.5 144 196-342 343-500 (644)
390 TIGR03074 PQQ_membr_DH membran 97.5 0.022 4.8E-07 67.4 24.9 195 156-351 194-486 (764)
391 KOG2444 WD40 repeat protein [G 97.5 0.00012 2.6E-09 71.6 5.1 145 284-432 32-181 (238)
392 KOG2395 Protein involved in va 97.5 0.003 6.6E-08 68.6 15.8 143 281-428 344-500 (644)
393 KOG4441 Proteins containing BT 97.5 0.0056 1.2E-07 70.5 19.3 226 153-386 282-547 (571)
394 KOG3630 Nuclear pore complex, 97.5 0.0031 6.8E-08 73.9 16.8 141 230-372 102-260 (1405)
395 COG3204 Uncharacterized protei 97.5 0.023 5E-07 58.1 20.8 163 225-387 82-265 (316)
396 PHA02713 hypothetical protein; 97.5 0.0097 2.1E-07 68.6 20.8 210 209-428 273-533 (557)
397 COG5276 Uncharacterized conser 97.4 0.18 4E-06 51.5 29.3 270 145-427 87-368 (370)
398 COG1520 FOG: WD40-like repeat 97.4 0.18 3.8E-06 55.2 29.5 193 158-353 70-279 (370)
399 TIGR03074 PQQ_membr_DH membran 97.4 0.038 8.3E-07 65.5 24.8 196 198-394 194-486 (764)
400 KOG4640 Anaphase-promoting com 97.4 0.00075 1.6E-08 74.6 9.7 94 227-321 19-114 (665)
401 TIGR03118 PEPCTERM_chp_1 conse 97.4 0.18 3.9E-06 52.1 25.9 215 147-363 25-306 (336)
402 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.015 3.3E-07 51.1 15.4 101 231-338 2-110 (111)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.16 3.4E-06 55.8 25.8 84 269-352 306-408 (415)
404 KOG4441 Proteins containing BT 97.2 0.016 3.4E-07 66.9 19.0 215 197-421 284-534 (571)
405 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.014 3E-07 51.3 14.1 101 315-424 2-110 (111)
406 PF14727 PHTB1_N: PTHB1 N-term 97.2 0.54 1.2E-05 51.8 29.9 268 155-431 36-363 (418)
407 KOG4499 Ca2+-binding protein R 97.2 0.075 1.6E-06 52.5 19.6 206 199-409 28-264 (310)
408 KOG2079 Vacuolar assembly/sort 97.1 0.004 8.6E-08 72.8 12.7 101 155-257 98-202 (1206)
409 KOG2079 Vacuolar assembly/sort 97.1 0.0041 8.9E-08 72.7 12.8 101 197-299 98-202 (1206)
410 KOG4640 Anaphase-promoting com 97.1 0.0019 4.1E-08 71.5 9.7 94 312-407 20-114 (665)
411 TIGR02604 Piru_Ver_Nterm putat 97.1 0.19 4.2E-06 54.9 25.6 142 187-331 14-202 (367)
412 PF10647 Gmad1: Lipoprotein Lp 97.1 0.083 1.8E-06 54.5 21.1 144 146-292 25-187 (253)
413 PF10647 Gmad1: Lipoprotein Lp 97.1 0.17 3.6E-06 52.3 22.9 144 230-377 25-187 (253)
414 PRK13684 Ycf48-like protein; P 97.1 0.2 4.3E-06 54.0 24.4 151 228-384 172-330 (334)
415 PF07995 GSDH: Glucose / Sorbo 97.0 0.24 5.1E-06 53.3 24.6 232 188-423 3-330 (331)
416 COG1520 FOG: WD40-like repeat 97.0 0.81 1.7E-05 50.0 29.6 194 199-395 69-278 (370)
417 KOG3630 Nuclear pore complex, 97.0 0.0069 1.5E-07 71.1 12.5 142 187-329 101-260 (1405)
418 PHA03098 kelch-like protein; P 97.0 0.02 4.4E-07 65.9 16.7 184 155-344 294-513 (534)
419 PF15390 DUF4613: Domain of un 96.9 0.51 1.1E-05 52.8 25.5 148 144-300 19-186 (671)
420 smart00320 WD40 WD40 repeats. 96.9 0.0032 6.9E-08 42.3 5.7 38 177-214 3-40 (40)
421 KOG1898 Splicing factor 3b, su 96.9 1.1 2.4E-05 53.2 28.8 68 157-224 550-626 (1205)
422 smart00036 CNH Domain found in 96.8 0.88 1.9E-05 48.2 29.3 228 155-392 12-277 (302)
423 PLN00033 photosystem II stabil 96.8 1.1 2.5E-05 49.2 31.7 145 273-425 241-396 (398)
424 smart00320 WD40 WD40 repeats. 96.8 0.0036 7.8E-08 42.1 5.4 38 303-340 3-40 (40)
425 COG3292 Predicted periplasmic 96.7 0.093 2E-06 58.1 18.3 271 143-424 163-443 (671)
426 TIGR02604 Piru_Ver_Nterm putat 96.7 0.54 1.2E-05 51.4 24.8 142 145-289 14-202 (367)
427 PLN00033 photosystem II stabil 96.7 0.8 1.7E-05 50.4 25.8 146 231-382 241-396 (398)
428 PF10168 Nup88: Nuclear pore c 96.7 0.36 7.8E-06 57.0 24.5 94 187-303 85-182 (717)
429 PRK05560 DNA gyrase subunit A; 96.7 1.4 3.1E-05 53.0 29.8 232 151-385 493-772 (805)
430 PF15390 DUF4613: Domain of un 96.7 0.048 1E-06 60.5 15.7 148 271-427 20-185 (671)
431 KOG1916 Nuclear protein, conta 96.7 0.00026 5.5E-09 80.6 -1.8 215 138-386 126-375 (1283)
432 PF07995 GSDH: Glucose / Sorbo 96.6 0.55 1.2E-05 50.5 23.7 230 147-380 4-330 (331)
433 PHA03098 kelch-like protein; P 96.6 0.054 1.2E-06 62.4 17.0 184 197-387 294-513 (534)
434 COG1506 DAP2 Dipeptidyl aminop 96.6 1.3 2.7E-05 52.1 28.1 284 139-434 54-390 (620)
435 PLN02153 epithiospecifier prot 96.6 0.46 1E-05 51.3 22.5 64 239-303 85-170 (341)
436 PF10433 MMS1_N: Mono-function 96.5 1.9 4E-05 49.4 28.2 248 153-408 219-503 (504)
437 COG3823 Glutamine cyclotransfe 96.5 0.1 2.2E-06 50.8 14.4 173 197-373 55-247 (262)
438 PLN02153 epithiospecifier prot 96.4 0.74 1.6E-05 49.7 23.3 185 155-345 32-287 (341)
439 TIGR01063 gyrA DNA gyrase, A s 96.3 2.8 6E-05 50.5 28.8 235 147-385 487-769 (800)
440 TIGR03118 PEPCTERM_chp_1 conse 96.3 1.8 3.9E-05 45.0 25.9 219 189-408 25-307 (336)
441 KOG1916 Nuclear protein, conta 96.3 0.00081 1.8E-08 76.7 -1.0 226 166-426 111-372 (1283)
442 COG4257 Vgb Streptogramin lyas 96.3 1.6 3.5E-05 44.5 23.1 237 146-386 63-306 (353)
443 PHA02790 Kelch-like protein; P 96.2 0.18 3.9E-06 57.2 17.8 181 155-343 271-471 (480)
444 PF10214 Rrn6: RNA polymerase 96.2 3.8 8.3E-05 49.3 29.7 157 184-343 77-277 (765)
445 KOG2377 Uncharacterized conser 96.2 0.91 2E-05 49.1 21.3 151 148-301 26-186 (657)
446 PF10214 Rrn6: RNA polymerase 96.2 1.8 3.8E-05 52.2 26.3 115 270-386 145-277 (765)
447 TIGR03548 mutarot_permut cycli 96.1 0.72 1.6E-05 49.3 20.7 105 197-303 72-197 (323)
448 PRK05560 DNA gyrase subunit A; 96.1 2.7 5.9E-05 50.7 27.1 232 195-429 495-773 (805)
449 TIGR03548 mutarot_permut cycli 96.0 0.66 1.4E-05 49.6 19.9 105 239-345 72-197 (323)
450 COG3823 Glutamine cyclotransfe 96.0 0.25 5.4E-06 48.2 14.2 173 239-416 55-247 (262)
451 KOG1898 Splicing factor 3b, su 96.0 5.3 0.00012 47.8 29.6 130 292-428 912-1048(1205)
452 TIGR03547 muta_rot_YjhT mutatr 95.9 1.2 2.6E-05 48.1 21.7 53 197-249 63-128 (346)
453 TIGR01063 gyrA DNA gyrase, A s 95.9 2.7 5.8E-05 50.7 26.1 232 194-429 492-770 (800)
454 PRK14131 N-acetylneuraminic ac 95.9 0.99 2.1E-05 49.5 21.1 53 197-249 84-149 (376)
455 PHA02790 Kelch-like protein; P 95.9 0.33 7.2E-06 55.0 17.8 180 197-386 271-471 (480)
456 KOG2280 Vacuolar assembly/sort 95.9 0.67 1.5E-05 53.1 19.4 193 166-363 64-268 (829)
457 COG5290 IkappaB kinase complex 95.9 0.29 6.2E-06 56.0 16.4 224 142-374 74-356 (1243)
458 PF05935 Arylsulfotrans: Aryls 95.9 3.8 8.2E-05 46.5 26.0 116 234-353 153-312 (477)
459 KOG1984 Vesicle coat complex C 95.8 0.89 1.9E-05 52.9 20.3 15 681-695 183-197 (1007)
460 COG4257 Vgb Streptogramin lyas 95.8 2.6 5.7E-05 43.0 21.1 222 188-414 63-291 (353)
461 KOG2280 Vacuolar assembly/sort 95.8 0.38 8.3E-06 55.0 16.9 197 208-410 64-271 (829)
462 PLN02193 nitrile-specifier pro 95.7 1.7 3.7E-05 49.2 22.7 189 155-346 175-414 (470)
463 PF10395 Utp8: Utp8 family; I 95.7 2.7 5.8E-05 48.6 23.7 161 227-393 128-313 (670)
464 COG5167 VID27 Protein involved 95.7 0.24 5.2E-06 54.1 14.4 143 196-342 477-632 (776)
465 COG5167 VID27 Protein involved 95.6 0.16 3.6E-06 55.3 12.8 142 154-300 477-632 (776)
466 PF10433 MMS1_N: Mono-function 95.5 6.2 0.00013 45.1 27.9 231 195-432 219-480 (504)
467 PF03022 MRJP: Major royal jel 95.4 4.1 9E-05 42.8 22.4 166 251-417 35-254 (287)
468 PF02333 Phytase: Phytase; In 95.4 4.4 9.6E-05 44.0 22.7 187 197-388 67-293 (381)
469 PRK14131 N-acetylneuraminic ac 95.4 2.1 4.6E-05 46.9 21.1 11 293-303 190-200 (376)
470 PF05935 Arylsulfotrans: Aryls 95.3 3 6.5E-05 47.2 22.6 111 276-390 153-306 (477)
471 PF12894 Apc4_WD40: Anaphase-p 95.3 0.062 1.4E-06 39.7 5.9 30 144-173 11-40 (47)
472 TIGR03547 muta_rot_YjhT mutatr 95.3 4.6 9.9E-05 43.6 23.3 53 239-291 63-128 (346)
473 PF08728 CRT10: CRT10; InterP 95.2 0.56 1.2E-05 54.5 16.2 102 239-341 113-245 (717)
474 KOG2100 Dipeptidyl aminopeptid 95.2 5 0.00011 48.1 24.8 56 151-206 103-167 (755)
475 PF03022 MRJP: Major royal jel 95.2 3.1 6.8E-05 43.7 20.8 185 146-330 2-253 (287)
476 PF02333 Phytase: Phytase; In 95.1 6.1 0.00013 42.9 23.2 193 155-351 67-300 (381)
477 PF10168 Nup88: Nuclear pore c 95.1 1.8 3.9E-05 51.3 20.3 95 143-260 83-181 (717)
478 PF13449 Phytase-like: Esteras 95.1 5.9 0.00013 42.5 23.0 142 187-329 20-231 (326)
479 KOG4849 mRNA cleavage factor I 95.0 0.21 4.6E-06 51.6 10.9 10 580-589 299-308 (498)
480 PF10395 Utp8: Utp8 family; I 95.0 2.8 6E-05 48.5 20.9 161 186-351 129-314 (670)
481 PLN02193 nitrile-specifier pro 95.0 3.8 8.2E-05 46.4 22.3 187 197-388 175-413 (470)
482 PRK13979 DNA topoisomerase IV 94.9 13 0.00028 45.6 31.3 149 150-300 510-689 (957)
483 KOG3616 Selective LIM binding 94.9 0.56 1.2E-05 53.3 14.3 71 141-214 11-81 (1636)
484 KOG1924 RhoA GTPase effector D 94.9 0.14 3.1E-06 58.3 9.8 6 651-656 589-594 (1102)
485 KOG2247 WD40 repeat-containing 94.9 0.0045 9.8E-08 66.8 -1.6 147 232-382 38-185 (615)
486 KOG1900 Nuclear pore complex, 94.8 2.2 4.8E-05 52.1 20.0 136 163-301 96-273 (1311)
487 KOG2247 WD40 repeat-containing 94.7 0.0066 1.4E-07 65.5 -0.8 135 149-285 39-174 (615)
488 PF08728 CRT10: CRT10; InterP 94.7 0.98 2.1E-05 52.6 16.4 113 314-428 102-246 (717)
489 KOG1983 Tomosyn and related SN 94.6 3.5 7.6E-05 50.8 21.9 35 142-176 33-67 (993)
490 PF12234 Rav1p_C: RAVE protein 94.6 0.95 2.1E-05 52.2 15.9 112 271-385 30-156 (631)
491 PF12894 Apc4_WD40: Anaphase-p 94.6 0.11 2.4E-06 38.4 5.6 35 312-347 11-45 (47)
492 PF14761 HPS3_N: Hermansky-Pud 94.6 2 4.3E-05 42.6 16.0 138 157-299 29-213 (215)
493 PF12234 Rav1p_C: RAVE protein 94.6 0.87 1.9E-05 52.5 15.6 110 188-299 31-155 (631)
494 PF14761 HPS3_N: Hermansky-Pud 94.5 2.2 4.9E-05 42.2 16.2 140 283-428 29-214 (215)
495 PRK13979 DNA topoisomerase IV 94.5 16 0.00034 44.8 34.1 113 145-258 552-689 (957)
496 KOG1900 Nuclear pore complex, 94.4 0.42 9.2E-06 57.9 12.9 145 289-435 96-279 (1311)
497 KOG2377 Uncharacterized conser 94.4 1.5 3.2E-05 47.6 15.6 98 269-369 65-167 (657)
498 PF08801 Nucleoporin_N: Nup133 94.2 0.89 1.9E-05 50.7 14.7 186 228-440 26-231 (422)
499 smart00036 CNH Domain found in 94.2 8.8 0.00019 40.6 24.3 222 197-430 12-272 (302)
500 KOG1896 mRNA cleavage and poly 94.2 18 0.00039 44.2 26.2 148 283-434 1047-1219(1366)
No 1
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-54 Score=438.03 Aligned_cols=373 Identities=60% Similarity=1.085 Sum_probs=356.4
Q ss_pred hhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEE
Q 005096 69 AAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSIN 148 (715)
Q Consensus 69 ~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~ 148 (715)
+++|++|...|+.+||.+.+.++.+.|.|+.+ ++...++....+..++++...+..+....+..+|++++.++-++.|.
T Consensus 22 ~g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~ 100 (464)
T KOG0284|consen 22 DGKRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVN 100 (464)
T ss_pred cCccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEecccccccccee
Confidence 46999999999999999999999999999998 88899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK 228 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~ 228 (715)
.|.|.|+|+.|++|+..|.+.||+..+.....++..|+..|+++.|+.++.++++|+.+|.|++|+.+...++.....|.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ 180 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA 180 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence 99999999999999999999999999888899999999999999999999999999999999999998887777666677
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~ 308 (715)
..|++++|++++..|++|++||+|+|||....+..+.+.+|...|++++|+|...+|+++++|..|++||.++++++.++
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..|+..|..+.|++++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|.+..+|++|+.||.|..|.+...+
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccC
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQ 442 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~ 442 (715)
.+..+..+|+..|++++|+|-|.+|++|+.|.++++|..+++++..........
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~~~~~~~ 394 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDKNADDVGLSN 394 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCcccccccccc
Confidence 888888999999999999999999999999999999999999988776654433
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-46 Score=377.03 Aligned_cols=328 Identities=26% Similarity=0.466 Sum_probs=292.5
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
..+.+|...+...+|.. +..++.+...+.+.|+||.+.+.. ..
T Consensus 109 sS~~GH~e~Vl~~~fsp-----~g~~l~tGsGD~TvR~WD~~TeTp--------------------------------~~ 151 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-----TGSRLVTGSGDTTVRLWDLDTETP--------------------------------LF 151 (480)
T ss_pred cccCCCCCcEEEEEecC-----CCceEEecCCCceEEeeccCCCCc--------------------------------ce
Confidence 34667777766655543 455677888899999999875441 23
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-EEEEeccCCCEEEEEEcC-----CCCEEEEEeCCCcEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSH-----NDNWMVSGDDGGAIKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~sp-----dg~~L~tgs~dg~I~i 212 (715)
+.++|+..|.||+|+|||+.||+|+.||+|++||-++++. .+.+.+|...|++++|.| ..++|++++.||.|+|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 6789999999999999999999999999999999888765 567899999999999975 5679999999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-----------
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----------- 281 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd----------- 281 (715)
||+..+.++..+.+|...|+|++|--+ .+|++++.|++|++|+..++...+.+++|...|+.|+++.|
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 999999999999999999999999744 58999999999999999999999999999999999998732
Q ss_pred -------------------------CCEEEEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 282 -------------------------KSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 282 -------------------------g~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
+..|++|++|.++.+|+-. +.+++.++.+|...|+.+.||||++|||+++.|+.
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 2359999999999999865 45588889999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
|++||.++|+.+.+|++|-..|+.++|+. +.++|++|+.|.++++||+++.+....+. +|.+.|.++.|++||..+++
T Consensus 391 VkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred eeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeec
Confidence 99999999999999999999999999998 89999999999999999998877655544 69999999999999999999
Q ss_pred EECCCeEEEEe
Q 005096 416 GSNDHTTKFWC 426 (715)
Q Consensus 416 gs~Dg~I~iWd 426 (715)
|+.|..++||.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-45 Score=364.76 Aligned_cols=323 Identities=24% Similarity=0.401 Sum_probs=287.7
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+..++.||.+.|.|+.|+|+|+.|++|+.|.++++||+.+.....+.++|...|.||+|+||++.||+|+.||+|++||-
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-eeeeecCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 216 NMNN-VKANKSAHKESVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 216 ~~~~-~~~~~~~h~~~I~~l~~sp-----d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
++++ ....+.+|+..|++|+|.| ..++|++++.||+|+|||+..+.++..+.+|...|+||.|--+ .+|++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence 8875 4567899999999999975 5678999999999999999999999999999999999999743 4899999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcC-----------CC-------------------------CEEEEEECC
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-----------NG-------------------------NWVLTASKD 333 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp-----------dg-------------------------~~Lasgs~d 333 (715)
.|++|++|+...|++++++++|..+|+.|+++. .+ ..|++|+.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999999999999999999999999999872 23 349999999
Q ss_pred CeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 334 QIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 334 g~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
.++.+|+-.. .+.+....+|...|+.+.|+| ++++||+++.|..|++||-++++.+.. +.+|-..|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~las-fRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLAS-FRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhh-hhhccceeEEEEeccCccE
Confidence 9999999754 447888999999999999999 999999999999999999999876644 4579999999999999999
Q ss_pred EEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccCCCCCC
Q 005096 413 LCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPT 468 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 468 (715)
|++|+.|.++++|++.+.+.. ...-|+.++...++++.+|...+..+..
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~-------~DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLK-------QDLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred EEEcCCCceEEEEEeeeeeec-------ccCCCCCceEEEEEecCCCceeecCCCc
Confidence 999999999999999642221 2235677888888998877766555443
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-44 Score=366.92 Aligned_cols=285 Identities=25% Similarity=0.417 Sum_probs=273.7
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+-+.+|..+.||.|++.||||+.+|.++||+..+...+.++.+|...|.++.|+|. +..|++|+.||+|++|+++..
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 467789999999999999999999999999999999999999999999999999997 568999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
..+..+.+|...|..++|+|+|++|++++.|.+-++||++++.++....+|...|.+|+|.+||.++++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
+++++++..+.+|...|.+|+|+|+|..||+|+.|++++|||++..+++..+.+|.+-|+.|+|+|..+.+|+|++.|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 379 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++||...+...+ +.+.+|++.|.++++++|+.+|++++.|.+|++|.
T Consensus 412 ~kiWs~~~~~~~-ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWSPL-KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcccc-hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999998776554 55568999999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-41 Score=328.26 Aligned_cols=287 Identities=25% Similarity=0.402 Sum_probs=268.3
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.|++|.++|.++.|+.|.++|++++.||.+.|||.-+.+.+..+......|..++|+|.++++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC------ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEe
Q 005096 217 MN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (715)
Q Consensus 217 ~~------~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs 289 (715)
+. .+.+.+.+|...+.|+.|.. +..|++++.|.++.+||+++++.+..|.+|.+.|.+++++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 55 45667889999999999986 56799999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCC
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHE 367 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~ 367 (715)
.|+..+|||+|.+.++..|.+|...|++|+|.|+|.-|++|+.|+++++||+|....+..+.. ....|++++|+. .+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 999999999999999999999999999999999999999999999999999999999888873 345799999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++|++|..|.++.+||.-..+. ..++.+|++.|+||..++||.-|++|+.|.+|+||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999865554 455668999999999999999999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-38 Score=308.25 Aligned_cols=291 Identities=21% Similarity=0.330 Sum_probs=255.3
Q ss_pred EEEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC-----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 135 FVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~-----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
.++.++++|.+.|+.++.... -..|++++.|.+|.+|++.. +...+.+++|+..|..++.++|+++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 456789999999999999987 46788999999999998654 567899999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCC--CCEE
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPT--KSLL 285 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spd--g~~L 285 (715)
++++||+.+++....+.+|...|.+++|++|++.|++|+.|.+|++||+........... +.+.|+|+.|+|+ ..+|
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 999999999999999999999999999999999999999999999999866544333333 2789999999998 5699
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
++++.|++|++||+++-+....+.+|...++.+++|+||.++++|+.||.+.+||++.++.+..+. +...|.+++|+|
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp- 243 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP- 243 (315)
T ss_pred EEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-
Confidence 999999999999999999999999999999999999999999999999999999999999977775 788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeecc--------CCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH--------DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h--------~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..+|+.+. +..|+|||+++...+..+.... .-...+++|+.||..|++|..|+.|++|.+.
T Consensus 244 nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 666666555 4469999998877655433221 2236788999999999999999999999874
No 7
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=311.12 Aligned_cols=296 Identities=22% Similarity=0.361 Sum_probs=273.3
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.++++..++.+|-..|..+++|.-..||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+.+++++.+.+|-..|.|++.+|....|++|+.|.+++|||+++...+..+.+|...|.++.+.+.+..+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||++.++....+..|+..|.+++.+|+...+|+++.| .|+-|++..+..+..+.+|...|++++.+ .+.++++|++
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n--sD~v~~~G~d 379 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN--SDGVLVSGGD 379 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec--cCceEEEcCC
Confidence 99999999999999999999999999999999998876 69999999999999999999999999998 5789999999
Q ss_pred CCcEEEEEcCCCCceEEEe-------eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 376 DGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
+|.|.+||.+++....... ...+..|.+.+|...|..|++|..|.+|++|.-++.....
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcc
Confidence 9999999998876543331 1135579999999999999999999999999876544433
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-38 Score=313.68 Aligned_cols=290 Identities=20% Similarity=0.387 Sum_probs=273.5
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|...|+.+-|+|+-..++++++|++|++||..+++++..+++|...|.+|+|+..|++|++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 216 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 216 ~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++ .+++..+.+|+..|.+++|-|.+.+|++++.|.+|+.||+.++.++.++.+|...|..+..+.||.++++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 56777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCC---------------CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQN---------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spd---------------g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
++|-+.++.+...++.|...|.|++|.+. +.++++++.|++|++||+.++.++.++.+|...|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999999999999999999999763 248999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++|+| +++||+++.+|++|++||+++..+...+. .|...|++++|+.+..+++||+-|-++++|..
T Consensus 340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcC-CCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999 99999999999999999998887765555 79999999999999999999999999999964
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=323.96 Aligned_cols=246 Identities=22% Similarity=0.377 Sum_probs=238.5
Q ss_pred EEecCCCCccEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..+|.+|...|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|++.|.+-++||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 3468999999999999997 66899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++++.......+|...|.+|+|.+||.++++|+.|..-+|||+++++++..+.+|...|.+|+|+|+|-.|+||+.|+++
T Consensus 290 ~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 290 LETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred cccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcE
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+|||++..+++.++-+|.+.|+.|+|++ .|.+|++++.|++++||..+++.+++++.+|++.|.++.+++ ++.+|+++
T Consensus 370 kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~ 448 (459)
T KOG0272|consen 370 KVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATS 448 (459)
T ss_pred EEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEe
Confidence 9999999999999999999999999998 788999999999999999999999999999999999999999 89999999
Q ss_pred eCCCcEEEEE
Q 005096 374 SLDGSIFHWL 383 (715)
Q Consensus 374 s~DG~I~iwd 383 (715)
+.|.+|++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999995
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.3e-36 Score=310.12 Aligned_cols=287 Identities=30% Similarity=0.520 Sum_probs=264.8
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..+.+|.+.|++++|++++++|++++.||.|++||+.+.+....+..|...+.++.|++++++|++++.|+.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
++....+..|...|.+++|+++++++++++.|+.|++||+++.+....+..|...|.+++|++++.+|++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999888888888898999999999998888888889999999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
|+++++.+..+..+...|.+++|+++++.|++++.|+.|++||+++++.+..+..+...+.+++|++ ++.++++++.||
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCC
Confidence 9999988888888888999999999999999999999999999999999999988999999999999 588888888899
Q ss_pred cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.|++||+.+......+. .|...|.+++|++++.+|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999998766554444 6888999999999999999999999999996
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=296.38 Aligned_cols=292 Identities=25% Similarity=0.382 Sum_probs=252.4
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|++++.+.++... ..+.+.+..|+..|.+|++.+.+... -...+.
T Consensus 10 tl~gh~d~Vt~la~~~~----~~~~l~sasrDk~ii~W~L~~dd~~~---------------------------G~~~r~ 58 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIK----NSDILVSASRDKTIIVWKLTSDDIKY---------------------------GVPVRR 58 (315)
T ss_pred eecCCCceEEEEEeecC----CCceEEEcccceEEEEEEeccCcccc---------------------------Cceeee
Confidence 47889999988666442 45667778899999999987553111 112447
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+.||+..|+.++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|++....
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c 138 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC 138 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred eeeeecCC-CCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 220 VKANKSAH-KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 220 ~~~~~~~h-~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
........ .+.|+|++|+|+ +.+|++++.|++|++||+++.+....+.+|.+.++.++++|||.++++|++||.+.+
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 55444443 889999999998 688999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC---------CCCeEEEEEccCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---------RKDVTALAWHPFHE 367 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h---------~~~V~~l~~sp~~~ 367 (715)
||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+++..++.+++.. .-...+++|+. ++
T Consensus 219 wdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 219 WDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred EEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CC
Confidence 9999999988876 788899999999877666655 556999999999888776522 23356789998 89
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 005096 368 EYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~ 385 (715)
..|++|..|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999874
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-36 Score=311.11 Aligned_cols=280 Identities=24% Similarity=0.476 Sum_probs=259.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
+..|++++|+.+|.+||+|+.||.++||+. ++.++.++..|.+.|.+|.|+.+|+||++++.|+++.+||..++.....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 457999999999999999999999999995 4678889999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
+..|...-.++.|-.+ ..|++++.|+.|+|+.+.....+.++.+|.+.|.+|.|++.+.+|+++++|++++||+.....
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 9888888788899744 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCceEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 304 ELCSFHGHKNMVLCVKWNQNG---------NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg---------~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
+...+..|...|..+.|+|++ ..|++++.|++|++||+..+.++..|..|...|++|+|++ +++++++|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 999999999999999999854 4689999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.||.|.||+..+.+...... ..+.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999998887655544 35679999999999999999999999999874
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.5e-36 Score=289.59 Aligned_cols=286 Identities=22% Similarity=0.445 Sum_probs=248.5
Q ss_pred EEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC---CceEEEE-eccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS---FNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~---~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.+.+|+++|..++|+|- |..||+|+.|..|+||+... ..+...+ .+|+..|++++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678999999999999998 89999999999999999884 3344333 3689999999999999999999999999
Q ss_pred EEEeCCCC--ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 211 KYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 211 ~iwd~~~~--~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
.||.-..+ +++.++.+|...|.|++|+.+|++||+|++|+.|.||.+. ..++...+..|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986654 6788899999999999999999999999999999999986 345677889999999999999999999
Q ss_pred EEEeCCCcEEEEECC---CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAK---SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~---s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++++.|++|++|+-. ...++.++.+|.+.|.+++|++.|..|++++.|++|+||...+. .-..|...++.+.|
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPW 241 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeee
Confidence 999999999999765 35688999999999999999999999999999999999987621 11247788999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCC------CceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEecC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~ 428 (715)
. ...|++++.|+.|++|..... ..+.+....|+..|+++.|++. ..+|++++.||.|++|.+.
T Consensus 242 ~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 678999999999999976542 1223345678899999999995 7899999999999999874
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-35 Score=307.89 Aligned_cols=367 Identities=19% Similarity=0.355 Sum_probs=293.2
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCC---------CCCc
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN---------PSTS 130 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~ 130 (715)
.|.+|...+..-|+.. ...|.++....+++|+|+.-..+ ..+.........-+..+.|... ++..
T Consensus 54 iYtEH~~~vtVAkySP-----sG~yiASGD~sG~vRIWdtt~~~-hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSP-----SGFYIASGDVSGKVRIWDTTQKE-HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred eeccccceeEEEEeCC-----CceEEeecCCcCcEEEEeccCcc-eeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3555554444433332 34578888888999999976543 2233332222222333333322 2223
Q ss_pred eeeeEEE------EecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE
Q 005096 131 FAAKFVH------TSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 203 (715)
Q Consensus 131 ~~~~~~~------~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t 203 (715)
|...|+. -++.+|...|++++|-|... +++||++|++|.+|+-.-.+...++..|..-|+|+.|+|||+++++
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 4333432 35789999999999999775 5899999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE---------------
Q 005096 204 GDDGGAIKYWQNNMNNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS--------------- 265 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~--------------- 265 (715)
++.||.|.|||-.+++.+..+. .|++.|.+|+|+||+..|++++.|.+++|||+.+.+++++
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 9999999999999999988887 8999999999999999999999999999999976555332
Q ss_pred ----------------------------ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE----------
Q 005096 266 ----------------------------LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS---------- 307 (715)
Q Consensus 266 ----------------------------l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~---------- 307 (715)
+.+|...|++++.++|+++|++|+.||.|.-||+.++..-+.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 347888999999999999999999999999999865432100
Q ss_pred -ec---------------------------cC-------------------------------------------CCceE
Q 005096 308 -FH---------------------------GH-------------------------------------------KNMVL 316 (715)
Q Consensus 308 -~~---------------------------~~-------------------------------------------~~~I~ 316 (715)
+. .+ .....
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s 447 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS 447 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence 00 00 01235
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+++++++++.+++|+.|+.|+||.+..+.. ...+..|...|++|+++| ++.+||+|...+.|.+||+.+.+......
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceeccee
Confidence 788899999999999999999999986553 334567999999999999 99999999999999999999887766666
Q ss_pred eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 395 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 395 ~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
..|...|.+++|+|+..+||||+.|-.|.||+++++.+.
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 669999999999999999999999999999999887765
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-36 Score=286.69 Aligned_cols=274 Identities=18% Similarity=0.316 Sum_probs=246.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDL 234 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l 234 (715)
-+|++++.|.+|++|...++.+.+++...++.|+.+.+.+|++.|++++. -.|++||+++++ .+.++.+|...|.++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37899999999999999999999999988999999999999999998875 679999999875 588899999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCC
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKN 313 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~ 313 (715)
.|..+|+.++++++||+++|||++...+-+.+. +...|++|..+|+...|++|..+|.|+|||+.+..+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999976666665 66999999999999999999999999999999877666553 3456
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCC------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.|.++...+||++|+.+...|..++|++-+. +.+..++.|.+.+..+.+|| +.++|++++.|.+++||+.++-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 7999999999999999999999999998653 45677889999999999999 8999999999999999999887
Q ss_pred CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
......+.+|...+++++||.|+.||+|++.|+.+++|++...++.
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 5666677789999999999999999999999999999999765443
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-35 Score=314.67 Aligned_cols=344 Identities=21% Similarity=0.334 Sum_probs=290.8
Q ss_pred ehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCC----CCceeeeEEEEecCCCCccEEEEEEcCCCCEEE
Q 005096 85 TSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNP----STSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI 160 (715)
Q Consensus 85 ~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~La 160 (715)
+.++.+++.+-+|..+.+-...... ....+.-......+.. ...+..+.....++.....|+|.+|++..+.||
T Consensus 204 l~tvskdG~l~~W~~~~~P~~~~~~--~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 204 LYTVSKDGALFVWTCDLRPPELDKA--EKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred EEEEecCceEEEEEecCCCcccccc--cccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 4567889999999987442111111 0001110001111111 112333334455666778999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
+|-.+|.+.||++....++..+...+..|..++|+..|++|+.|+.. |.+.||++.+...+....+|...++++++++|
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD 361 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence 99999999999999999999999999999999999999999988765 89999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-CCceEEE
Q 005096 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-KNMVLCV 318 (715)
Q Consensus 240 ~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-~~~I~sl 318 (715)
|.+||+|++||+|+|||..++-+..+|..|...|+.+.|+..++.|++.+.||+|+.||+...+..+++... .....|+
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998743 3457899
Q ss_pred EEcCCCCEEEEEECCC-eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc
Q 005096 319 KWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg-~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h 397 (715)
+..+.|.++++|+.|. .|.||++.+|+.+..+.+|+++|.+++|++ .+..|++++.|.+|++||+-......+.+. +
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i 519 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-I 519 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-e
Confidence 9999999999998876 699999999999999999999999999999 888999999999999999977655555553 5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 398 DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 398 ~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
...|..++|.|||+.|++++.||.|.+||.+....
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 66899999999999999999999999999876554
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-35 Score=303.89 Aligned_cols=291 Identities=22% Similarity=0.407 Sum_probs=252.3
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+.++..|..-|+|+.|+|||.++|+++.||+|.|||-.+++.+..+. +|.+.|.+|+|+||++.|+|++.|.+++|
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 456788999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred EeCCCCceeeee-------------------------------------------cCCCCCeEEEEEecCCCEEEEEECC
Q 005096 213 WQNNMNNVKANK-------------------------------------------SAHKESVRDLSFCRTDLKFCSCSDD 249 (715)
Q Consensus 213 wd~~~~~~~~~~-------------------------------------------~~h~~~I~~l~~spd~~~Las~s~D 249 (715)
||+.+.+++.++ .+|...|+++..++|+++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 998766554432 4788999999999999999999999
Q ss_pred CcEEEEECCCCeeEE-------------------------------Ee--------------------------------
Q 005096 250 TTVKVWDFARCQEER-------------------------------SL-------------------------------- 266 (715)
Q Consensus 250 g~V~iwdl~~~~~~~-------------------------------~l-------------------------------- 266 (715)
|.|.-||+.++..-+ .+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 999999985432210 00
Q ss_pred ----------cc--------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCE
Q 005096 267 ----------TG--------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 267 ----------~~--------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
.. ......+++++++++.+++|+.|++|+||.+.... ....+..|.+.|++|+||||+.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 00 01124678899999999999999999999998654 33345679999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEE-EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 327 VLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~-~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
||++...+.|.+||+.+.+.. ..+.-|...|.+++|+| +..++|+|+.|-.|.||+++.....+.+..+|...|+.+.
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~ 580 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVA 580 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEE
Confidence 999999999999999987764 33445999999999999 8999999999999999999998888889999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEecC
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
|. |...|++.+.|-.|++|++.
T Consensus 581 wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 581 WL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Ee-cCceEEeccCcceeEEeccc
Confidence 98 45678999999999999874
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.1e-36 Score=326.60 Aligned_cols=248 Identities=20% Similarity=0.417 Sum_probs=233.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------------------------ceEEEEeccCCC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------------------------NFEMILQAHDHA 188 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-------------------------------~~~~~l~~h~~~ 188 (715)
+......++|+.|+.|++.||.|..|..|++|.+... ...+++.+|.+.
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 3334567999999999999999999999999986631 123457899999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
|..+.|+|+.++|+++++|++|++|.+.+...+..+++|..+|+++.|+|.|-+||+++.|++-++|.......++.+.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
|.+.|.|+.|+|+.+++++|+.|.+|++||+.+|..++.|.+|.+.|++++|||+|++|++|+.|+.|+|||+.+++.+.
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.+.+|.+.|.+|.|+. ++.+||+|+.|.+|++||+....
T Consensus 614 ~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999 89999999999999999986543
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=326.42 Aligned_cols=290 Identities=27% Similarity=0.475 Sum_probs=261.0
Q ss_pred EEecCC-CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 137 HTSLNK-NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 137 ~~~l~~-H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
...+.+ |...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|++++++|++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344444 48899999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred eC-CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 214 QN-NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 214 d~-~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
|+ ..+....++++|...|++++|+++++++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 99 45588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCc--eeEEeccCCCc--eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE---EEEEccC
Q 005096 293 LVKLWDAKSGR--ELCSFHGHKNM--VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT---ALAWHPF 365 (715)
Q Consensus 293 ~I~iwDl~s~~--~~~~~~~~~~~--I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~---~l~~sp~ 365 (715)
.|+|||+.++. ++..+..+... ++++.|++++++|++++.|+.+++||++.++.+..+.+|...+. +...+.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST- 389 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-
Confidence 99999999998 55666655555 99999999999999999999999999999999999999888643 333444
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 428 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs--~Dg~I~iWdl~ 428 (715)
++.++++|+.|+.|++||+.+...+. ...+| ...|..++|++...++++++ .|+.|++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~-~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQ-RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhh-hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 88999999999999999998855544 44467 88999999999999999998 79999999864
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=287.68 Aligned_cols=286 Identities=22% Similarity=0.420 Sum_probs=256.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~-~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+.+|++.|+.+.|+|+|.+||+|+.|..|.||++ ...+....+++|.+.|..+.|..|++.|++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 47799999999999999999999999999999994 44566778889999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
++.....+.|..-|+.+.-+.-+ .++.+++.|++++|||+++...++++. ....++++.|..++..+++|+-|+.|++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceee
Confidence 99999999999999999976655 456788899999999999888877775 4568999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCC----CCeEEEEEccCCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----MKELESFRGHR----KDVTALAWHPFHEE 368 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t----~~~~~~~~~h~----~~V~~l~~sp~~~~ 368 (715)
||++.+..+..+.+|.+.|+.+..+++|.++++-+.|.+|++||++- .+++..+.+|. .....++|+| +++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~ 279 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGT 279 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCC
Confidence 99999999999999999999999999999999999999999999985 34577777654 4567889999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+.+|+.|..+++||......+ ..+.+|.+.|++++|+|...+|.+++.|.+|++=.+
T Consensus 280 ~i~ags~dr~vyvwd~~~r~~l-yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSRRIL-YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ccccccccceEEEeecccccEE-EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999665544 455589999999999999999999999999987543
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.4e-37 Score=304.90 Aligned_cols=275 Identities=24% Similarity=0.464 Sum_probs=247.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
....|+|+.+ |...+++|..|++|+|||.++..+.+++.+|.+.|.|+.|. .+.|++|+.|.+|+|||+++++.+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 5678999998 45579999999999999999999999999999999999984 6799999999999999999999999
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
++..|.+.|..+.|+ +.++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999996 5699999999999999996644 335678999999999997 679999999999999999
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
.+++.++++.+|...|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|+.-|.++.| +++.|++|..||+|
T Consensus 348 st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceE
Confidence 9999999999999999999874 899999999999999999999999999999999999999 67899999999999
Q ss_pred EEEEcCCCCce--------EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 380 FHWLVGHETPQ--------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 380 ~iwd~~~~~~~--------~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+|||+...... ......|.+.|..+.|. ...|++++.|.+|.|||+.....
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 99999765432 23344588999999994 77899999999999999865433
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=288.00 Aligned_cols=288 Identities=19% Similarity=0.310 Sum_probs=255.2
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..++.+|++.|.+++.+|+.++++||+.|..-.||++.+++....+.+|+..|+++.|+.|+.+||||+-+|.|+||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
++.....+...-+.|.-+.|+|.+..|++|+.||.|.+|.+.+....+.+.+|...+++=.|.|+|++++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99988888777788999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCceeEEeccC---------------------------------------------------CCc---eEEEEEcC
Q 005096 297 WDAKSGRELCSFHGH---------------------------------------------------KNM---VLCVKWNQ 322 (715)
Q Consensus 297 wDl~s~~~~~~~~~~---------------------------------------------------~~~---I~sl~~sp 322 (715)
||++++..+.++... ... |.++.|+.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 999998776655410 001 12223333
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~ 402 (715)
.-.+.|+|+.||+|.|||+.+.+....+. |...|+.+.|.. ..+|++++.+|.|++||.+++...... .+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEE-ecCchhee
Confidence 44677889999999999998776555554 888899999985 788999999999999999998876554 47999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 403 DLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 403 ~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+++++++.++++|+|.|++.+||++.
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999874
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-33 Score=271.03 Aligned_cols=289 Identities=18% Similarity=0.317 Sum_probs=247.4
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latg 162 (715)
-++.+..-+.+||+|+..... +..++.....-|+.+.+++|++.||++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~--------------------------------C~rTiqh~dsqVNrLeiTpdk~~LAaa 58 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI--------------------------------CSRTIQHPDSQVNRLEITPDKKDLAAA 58 (311)
T ss_pred eEEEeccCcceeeeeehhcCe--------------------------------EEEEEecCccceeeEEEcCCcchhhhc
Confidence 366677788999999865433 334566677789999999999999999
Q ss_pred eCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 163 SQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 163 s~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
+.- .|+|||+.+.+ .+.++.+|...|+++.|..+|+++++|++||+++|||++...+.+.+ .+...|+++..+++.
T Consensus 59 ~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQ 136 (311)
T KOG0315|consen 59 GNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQ 136 (311)
T ss_pred cCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCc
Confidence 876 59999998865 58899999999999999999999999999999999999986655554 567999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceeEEeccCCC
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG------RELCSFHGHKN 313 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~------~~~~~~~~~~~ 313 (715)
..|++|..+|.|+|||+.+..+...+. .....|.++++.+||++|+.+...|++++|++-+. +.+.++..|..
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 999999999999999998876655543 34467999999999999999999999999998654 34566788999
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
.|..+.+|||+++|++++.|.+++||++++. +....+++|...+..++||. ++.||++++.|+.+++||+..++++..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeee
Confidence 9999999999999999999999999999988 66677889999999999999 899999999999999999988876654
Q ss_pred EeeccCCCEEEEEEc
Q 005096 393 IHNVHDNTVWDLAWH 407 (715)
Q Consensus 393 ~~~~h~~~V~~l~~s 407 (715)
.. +|.....|++..
T Consensus 296 y~-gh~K~~vc~~ln 309 (311)
T KOG0315|consen 296 YQ-GHHKAAVCVALN 309 (311)
T ss_pred cC-CcccccEEEEee
Confidence 44 565555566543
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5e-34 Score=279.00 Aligned_cols=286 Identities=17% Similarity=0.304 Sum_probs=248.1
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
+.+.+|...|.+-.+.. +.+++.+...++.+.||+.....+..
T Consensus 49 r~LkGH~~Ki~~~~ws~-----Dsr~ivSaSqDGklIvWDs~TtnK~h-------------------------------- 91 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-----DSRRIVSASQDGKLIVWDSFTTNKVH-------------------------------- 91 (343)
T ss_pred EEecccccceeeeEecC-----CcCeEEeeccCCeEEEEEccccccee--------------------------------
Confidence 44555554444433322 23345556667777788765443222
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+.--...|..++|+|.|+++|+|+-|+...||++.+. +..+++.+|.+.+.|+.|.. +..|+|++.|.++.+
T Consensus 92 aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCal 170 (343)
T KOG0286|consen 92 AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCAL 170 (343)
T ss_pred EEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEE
Confidence 22234567999999999999999999999999998865 45677999999999999986 678899999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
||++++..+..+.+|...|.+|+++| +++.+++|+-|+..+|||++.+..+..|.+|...|++|+|.|+|.-|++|++|
T Consensus 171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
+++++||+|....+..+.. ....|++++||..|++|++|..|.++.+||.-.++.+..+.+|+..|++|..++ ++.-
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~a 329 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMA 329 (343)
T ss_pred ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcE
Confidence 9999999999988888763 345799999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEE
Q 005096 370 FVSGSLDGSIFHWL 383 (715)
Q Consensus 370 l~sgs~DG~I~iwd 383 (715)
+++|+.|.+|+||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-34 Score=294.72 Aligned_cols=284 Identities=21% Similarity=0.445 Sum_probs=254.0
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC--CceEE--EEe----------ccCCCEEEEEEcCCCCEEEEEeCC
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQS--FNFEM--ILQ----------AHDHAIRSMVWSHNDNWMVSGDDG 207 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~--~~~~~--~l~----------~h~~~V~~l~~spdg~~L~tgs~d 207 (715)
|...|.+++|+|-.. .|++++.|-..++|++.. ..... .++ ..+..|++++|+.+|++||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 999999999999766 899999999999999764 11111 111 123679999999999999999999
Q ss_pred CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
|.++||+.. +.++.++..|++.|.+|.|+.+|++|++++.|+++.+||..+++....+.-|.....+|.|-.+ ..|++
T Consensus 257 G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~t 334 (524)
T KOG0273|consen 257 GEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFAT 334 (524)
T ss_pred cEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEee
Confidence 999999865 6677788999999999999999999999999999999999999999999888877778999854 56899
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCC-
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH- 366 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~- 366 (715)
++.|+.|+++.+...+.+.++.+|.+.|.++.|++.+.+|++++.|++++||.+........+..|...|..+.|+|++
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred -------CCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 367 -------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 367 -------~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+..|++++.|++|++||+..+..+..+ ..|..+|.+++|+++|++|++|+.||.|.||++..
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 457999999999999999888877664 46999999999999999999999999999999865
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6e-33 Score=331.50 Aligned_cols=285 Identities=17% Similarity=0.317 Sum_probs=245.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----c----eEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCc
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----N----FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGA 209 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~----~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~ 209 (715)
.+..|.+.|++++|++++++||+|+.|++|+|||+.+. . ....+. +...|.+++|++. +++|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 45669999999999999999999999999999997542 1 122222 3567999999874 789999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEc-CCCCEEEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH-PTKSLLVS 287 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s-pdg~~L~s 287 (715)
|+|||+.+++.+..+..|...|++++|++ ++.+|++++.|++|++||++++..+..+..+ ..|.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999998889999999999999996 7889999999999999999998888887744 579999995 56899999
Q ss_pred EeCCCcEEEEECCCCc-eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEeecCCCCeEEE
Q 005096 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTAL 360 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~-~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t------~~~~~~~~~h~~~V~~l 360 (715)
|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|+.|+|||++. .+.+..+.+|...+.++
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 9999999999998765 466778899999999997 788999999999999999974 35678899999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE------------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~------------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+|++ ++.+|++|+.|+.|++|+.......... ...+...|.+++|++++..|++++.||.|+||++
T Consensus 715 ~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999 7889999999999999998655332211 1234567999999999999999999999999986
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=308.17 Aligned_cols=346 Identities=22% Similarity=0.377 Sum_probs=283.7
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCch--hhhcCccceee------cCCCCCce---eeeEEEEecCCCCccEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPA--AAIDMLPTVAY------TDNPSTSF---AAKFVHTSLNKNRCSINRV 150 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~--~~~~~l~~~~~------~~~~~~~~---~~~~~~~~l~~H~~~I~~l 150 (715)
..|+.+....+.+++|+..+.+....+.... .....+..... .......+ ..-.+.+.+-|..+.|.++
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 5678888888999999987766544443332 11111111100 00000000 0112345677889999999
Q ss_pred EEc-CCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeeeec
Q 005096 151 LWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKS 225 (715)
Q Consensus 151 ~~s-pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~----~~~~~~ 225 (715)
+|- ++.++||+++..+.+++|++.+..+. .+.+|+..|.++....+|.+|++|+.|.++++|.++.+. ++....
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 975 67789999999999999998887666 889999999999966677899999999999999885442 344557
Q ss_pred CCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeE---E------EecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 226 AHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE---R------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 226 ~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~---~------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+|...|.+++++..+ .+|++++.|.+|++|++...+.. . ....|...|+|++++|+.++|+||+.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 899999999998755 67999999999999999662221 1 2346899999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
||++.....+.++.+|+..|.|+.|++....+++++.|++|+||.+.++.++++|.+|...|..+.|.. ++..|++++.
T Consensus 489 iW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~a 567 (775)
T KOG0319|consen 489 IWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGA 567 (775)
T ss_pred eecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
||.|++|+++++.++.. +..|.+.||+++.++....++||+.||.|.+|.-.+.
T Consensus 568 dGliKlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred CCcEEEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 99999999988877654 4579999999999999999999999999999975443
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=292.84 Aligned_cols=291 Identities=17% Similarity=0.342 Sum_probs=250.3
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
...+..|.+.|.-+.||++|++||+++.|.+..||++.. .++.+++.+|...|.-+.||||+++|++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 456889999999999999999999999999999998554 45688899999999999999999999999999999999
Q ss_pred eCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCC
Q 005096 214 QNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 214 d~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~D 291 (715)
|+.++++...+. ++...+.+++|+||+..+++|+.|++|..||++.. .+....+ ..-.|.+++.++||+++++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999998776664 34688999999999999999999999999998654 3333333 23569999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC--eEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~--V~~l~~sp~~~~~ 369 (715)
..|++|+.++...+..+. ....|+++++|.|++++++.-.+..|++||++..+.+..+.+|+.. |..-+|.-.+..+
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 999999998766554444 4667999999999999999999999999999999999999998865 4444565546689
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEecCCC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~~~ 430 (715)
+++|++|+.|+||+..+++.+ ..+.+|...|+|++|+|. -..+|++++||+||||.....
T Consensus 455 iaSGSED~kvyIWhr~sgkll-~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLL-AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCcee-EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999877655 556689999999999996 478999999999999987643
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-34 Score=269.35 Aligned_cols=281 Identities=23% Similarity=0.358 Sum_probs=250.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.|..|.+.|+++.|+-||+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||++++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC--CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~--~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+..+.+.+|...|+.+.|+.+...+++|+.|.+|++||.++ .+.+..+....+.|.+|.++ +..|++|+.||+++.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 99999999999999999999999999999999999999965 45677888888899999997 678999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE--EEccCCCCEEEEEe
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHEEYFVSGS 374 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l--~~sp~~~~~l~sgs 374 (715)
||++.|+....+- ..+|+|++|++|++.+++++.|++|++.|-.+++.+..+++|...-..+ +++. ....+++|+
T Consensus 170 ydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgS 246 (307)
T KOG0316|consen 170 YDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGS 246 (307)
T ss_pred EEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEecc
Confidence 9999998766654 4569999999999999999999999999999999999999998875544 4444 677899999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCC-EEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNT-VWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+||.|++||+.....+.++.. +... |.+++++|....|+++. ++.+.+|.
T Consensus 247 EDG~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 247 EDGKVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred CCceEEEEEeccceeeeeecc-CCceeEEeeecccCccceeEec-CCceecee
Confidence 999999999988776666554 4444 89999999977777776 45566664
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=289.48 Aligned_cols=270 Identities=24% Similarity=0.468 Sum_probs=251.1
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
.....+..++.+|++|++...+. ...|++|.+.|.+|+|+..|++||+
T Consensus 120 ~~~v~~as~d~tikv~D~~tg~~--------------------------------e~~LrGHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTETGEL--------------------------------ERSLRGHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred ceEEEEecCCceEEEEEccchhh--------------------------------hhhhhccccceeEEEEecCccEEEe
Confidence 34445566789999998765541 2368999999999999999999999
Q ss_pred EeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 162 GSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 162 gs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
++.|=.+++||.++ .++++.+.+|+..|.+++|-|.|++|++++.|.+|+.|++.++.++.++.+|.+.|..++.+.||
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 99999999999887 67888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCcee
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT---------------KSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd---------------g~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.++++++.|.+|++|-+.+..+...+..|+..|.+++|-+. +.++++++.|++|++||+.++.++
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 99999999999999999999999999999999999999763 248999999999999999999999
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.++.+|.++|..++|+|.|+||+++.+|++|++||+++.++.+.+..|..-|+++.|+. +..++++|+-|-.+++|..
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999998 7789999999999999974
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-33 Score=298.98 Aligned_cols=343 Identities=22% Similarity=0.346 Sum_probs=295.8
Q ss_pred CCCCCCCCCCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCc
Q 005096 51 EFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTS 130 (715)
Q Consensus 51 ~~~~~p~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (715)
+++++-.++.+.+|-+.+....+ ..+.+++.+..|+...|+|..+..+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~W-----s~DSr~l~~gsrD~s~rl~~v~~~k~-------------------------- 179 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDW-----SDDSRLLVTGSRDLSARLFGVDGNKN-------------------------- 179 (893)
T ss_pred ccCcceEeeeecCCccceeEEEe-----ccCCceEEeccccceEEEEEeccccc--------------------------
Confidence 45667778888888777765443 23566777888999999998765442
Q ss_pred eeeeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------Cce------EEE
Q 005096 131 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-----------------------FNF------EMI 181 (715)
Q Consensus 131 ~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-----------------------~~~------~~~ 181 (715)
+....+.+|++.|.++-|..+...|+|.+.||.|.+|.... ++. ...
T Consensus 180 ----~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k 255 (893)
T KOG0291|consen 180 ----LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK 255 (893)
T ss_pred ----cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence 22346889999999999999999999999999999997651 110 001
Q ss_pred -----EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-CcEEEE
Q 005096 182 -----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-TTVKVW 255 (715)
Q Consensus 182 -----l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g~V~iw 255 (715)
+......|++.+|++..+.|+++-..|...+|++....++..+......|..++|+..|..|+.++.. |.+.||
T Consensus 256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVw 335 (893)
T KOG0291|consen 256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVW 335 (893)
T ss_pred EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEE
Confidence 11223679999999999999999999999999999999999999888999999999999999998764 899999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
++.+...+.+..+|...+++++++|||.++++|++||+|+|||..++-|+.+|..|++.|+.+.|+.+++.|++.+.||+
T Consensus 336 eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 336 EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCC-cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 336 IKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
|+.||+...+..++|.... ....|++..+ .+.++++|+.|. .|++|++.++..+ .++.+|+++|.+++|++++..|
T Consensus 416 VRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqll-DiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLL-DILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred EEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeee-ehhcCCCCcceeeEEccccCeE
Confidence 9999999999999998654 4578889988 788999998887 4999999888654 6777899999999999999999
Q ss_pred EEEECCCeEEEEecCCC
Q 005096 414 CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~ 430 (715)
+++|.|.+||+||+=..
T Consensus 494 aS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EeccccceEEEEEeecc
Confidence 99999999999998544
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-34 Score=312.48 Aligned_cols=252 Identities=24% Similarity=0.454 Sum_probs=231.8
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------------------------------ceeeeecCCC
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-------------------------------NVKANKSAHK 228 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-------------------------------~~~~~~~~h~ 228 (715)
.++......++|..|+.|+++||.|..|..|++|.+... ....++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 344445678999999999999999999999999986521 1233457899
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~ 308 (715)
+.|..+.|+|+.++|++|+.|++||+|.+.+..++..+.+|...|+++.|+|.|-+||+++.|++-++|.......++.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.+|.+.|.|+.|+|+.+|+++|+.|.+|++||+.+|..++.|.+|.+.|++|+|+| ++++|++|+.||.|+|||+.++.
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999887
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.+..+. +|.+.|.++.|+.||.+||+++.|++|++||+......
T Consensus 611 ~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 766555 58999999999999999999999999999998654443
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=299.48 Aligned_cols=285 Identities=22% Similarity=0.415 Sum_probs=262.4
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
+.+..|+.+|.+|.|+|...+++++-.+|.|.|||.++...++.+...+.+|++..|-...+++++|++|..|+||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCC-CCEEEEEeCCCcEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVK 295 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~ 295 (715)
.+.+..+..|.+.|++|+.+|..-+++++++|-+|++||.+. ..+..++.+|..-|.+|+|+|. .+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999964 5678899999999999999995 56999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
||.+.+..+..++++|...|+|+.|-+ |.-+|++|+.|.+|+|||..+..++.++.+|...|+.+.|+| .-.+|++|
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisg 245 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISG 245 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEe
Confidence 999999999999999999999999987 446999999999999999999999999999999999999999 88999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
++||+|+||+..+-+....+. ..-+.|+|++-...+..+++|.++|.|.|
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999987655443333 34678999999998888999888877654
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=280.62 Aligned_cols=253 Identities=28% Similarity=0.497 Sum_probs=237.7
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iw 255 (715)
.++.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++.++.++.+|...|..++++....||++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
|++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.++.+.+-.-.+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999997778999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
|++||++.++....+..|+..|.+++.+| ....|++++.| .|+-|++-.+..+.. +.+|...|++++.+.|+ ++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCc-eEEE
Confidence 99999999999999999999999999999 88889998887 789999988876666 66799999999998776 7889
Q ss_pred EECCCeEEEEecCCCCC
Q 005096 416 GSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 416 gs~Dg~I~iWdl~~~~~ 432 (715)
|+++|.+.+||.+..-.
T Consensus 377 G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCceEEEEEecCcCcc
Confidence 99999999999976444
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-32 Score=278.31 Aligned_cols=281 Identities=25% Similarity=0.423 Sum_probs=246.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~L~tgs~dg~I~iwd~~~~ 218 (715)
-|.+.|.+|... +++|++|++||.++|||.+ ++..+.+.+|.+.|.+++|.-.+ ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488999999988 7899999999999999965 78899999999999999885433 35999999999999998876
Q ss_pred cee----eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-------------------------CeeEEEeccc
Q 005096 219 NVK----ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------------------------CQEERSLTGH 269 (715)
Q Consensus 219 ~~~----~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-------------------------~~~~~~l~~~ 269 (715)
+.. ....+|+..|.+++...++..+++++.|.+|+||+.++ ...+..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 23358999999999999999999999999999999321 1234567899
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---E
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---E 346 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---~ 346 (715)
...|.+|.|+. ...+++++.|.+|+.||+.++.++.++. ....++|+.+++..++|++|+.|..|++||-|++. .
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999997 6789999999999999999999988887 45679999999999999999999999999998753 3
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...|.+|...|.++.|+|.+...|++++.|+++++||+++.+..+..+.+|.+.|.++.|+ ++.+|++|+.|.+|+|+.
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 5778899999999999999999999999999999999999986666677899999999998 566899999999999997
Q ss_pred cC
Q 005096 427 RN 428 (715)
Q Consensus 427 l~ 428 (715)
-.
T Consensus 417 ~~ 418 (423)
T KOG0313|consen 417 GS 418 (423)
T ss_pred cc
Confidence 53
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.7e-34 Score=296.65 Aligned_cols=292 Identities=17% Similarity=0.348 Sum_probs=256.7
Q ss_pred eeeEEEEecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 132 AAKFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 132 ~~~~~~~~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
..+-+...+.+|+..|+++.|.+ .+.+|++++.|+.|+||++-. +++++++.+|...|.+++|+.+|..|++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 34455678999999999999999 889999999999999999776 8899999999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
|++||++++.++..+. ....+.|+.|.+|+ +.|++|+.|+.|+.||+++++.+..+..|.+.|..|.|-++++++++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999988874 45678999999998 889999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCC--CeEEEEE
Q 005096 289 GKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM---KELESFRGHRK--DVTALAW 362 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~---~~~~~~~~h~~--~V~~l~~ 362 (715)
++|+.++||+.+....+..+. .......||..+|+++++++-+.|+.|.||.+... ...+.|++|.. .-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999998876554432 23345778999999999999999999999987542 23455667654 4567899
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
|| ++.+|++|+.||.+.+||.++.+... .+..|+..+..+.|+|. ...|||++.||.|++|+
T Consensus 441 Sp-DG~~l~SGdsdG~v~~wdwkt~kl~~-~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SP-DGRTLCSGDSDGKVNFWDWKTTKLVS-KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cC-CCCeEEeecCCccEEEeechhhhhhh-ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99 99999999999999999998876554 44578999999999997 57899999999999996
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-33 Score=299.80 Aligned_cols=320 Identities=19% Similarity=0.268 Sum_probs=260.1
Q ss_pred eeeEEEEecCCCCccEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 132 AAKFVHTSLNKNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 132 ~~~~~~~~l~~H~~~I~~l~~spdg~--~Latgs~dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
...++...++||.+.|.++.|+++-+ .|++|..|+.|++||+.+... +..+..|.+.|++++|++|+..++++++|.
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 34456778999999999999999765 488999999999999996554 777888999999999999999899999999
Q ss_pred cEEEEeCCCCc---------------------------------------------------------------------
Q 005096 209 AIKYWQNNMNN--------------------------------------------------------------------- 219 (715)
Q Consensus 209 ~I~iwd~~~~~--------------------------------------------------------------------- 219 (715)
.|.|||+...+
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 99999851000
Q ss_pred --------------------------------------------------------------eeeeecCCCCCeEEEEEe
Q 005096 220 --------------------------------------------------------------VKANKSAHKESVRDLSFC 237 (715)
Q Consensus 220 --------------------------------------------------------------~~~~~~~h~~~I~~l~~s 237 (715)
....+.+|++.|.+++..
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 000112567777777755
Q ss_pred cCCCEEEEEECCCcEEEEECCCCe----eEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---eE---
Q 005096 238 RTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE---LC--- 306 (715)
Q Consensus 238 pd~~~Las~s~Dg~V~iwdl~~~~----~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~---~~--- 306 (715)
.+|.+|++|+.|.++++|.+++.. ++....+|.+.|.+|+++..+ .+|++++.|++|++|++...+. ..
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 677899999999999999884432 334567899999999997655 4899999999999999976221 11
Q ss_pred ---EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 307 ---SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 307 ---~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
....|...|+|++++++.++|++|+.|++.+||++.....+.++.+|...|.++.|++ .+.+++|+|.|++|+||.
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEE
Confidence 2246899999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCC
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGN 460 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 460 (715)
+.+..+. +.+.+|...|..+.|-.++..|++++.||.|+||++++..-... ...+.++...+.......
T Consensus 534 is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t-------lD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 534 ISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT-------LDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eccceee-eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh-------hhhccceeEEEeecCccc
Confidence 9776654 55668999999999999999999999999999999976444332 233445555555555443
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=285.09 Aligned_cols=272 Identities=20% Similarity=0.361 Sum_probs=233.3
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 264 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~ 264 (715)
-+..|..|.|.++|+.|++|+..|.+.+|+..+......+..|+..|+++.|+.++.++++|+.+|.|++|+.+-.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 35679999999999999999999999999988777777788999999999999999999999999999999986543333
Q ss_pred EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 265 ~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
....|...|++++|+|++..|+++++||+|+|||....+..+.+.+|...|.|+.|+|...+|++++.|..|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 33445589999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEE
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTK 423 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~ 423 (715)
.++.++..|+..|..+.|++ ++++|++++.|..++++|+++-+++ ....+|+..|+++.|+|- ..+|++|+.||.|.
T Consensus 255 ~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 255 SCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKEL-FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred chhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHH-HHhhcchhhheeeccccccccceeeccCCCceE
Confidence 99999999999999999999 7799999999999999999955544 445579999999999996 67899999999999
Q ss_pred EEecCCCCCcccccccccCCccccceeeEEeecCCCCccCC
Q 005096 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLP 464 (715)
Q Consensus 424 iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 464 (715)
.|.+........- ..+++.....+++...|++++.
T Consensus 333 h~~v~~~~p~~~i------~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 333 HWVVGLEEPLGEI------PPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred EEeccccccccCC------CcccccceeeeeccccceeEee
Confidence 9999733222211 1233444555555555555554
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3e-34 Score=285.38 Aligned_cols=239 Identities=25% Similarity=0.471 Sum_probs=216.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..|.||+++|.|+.|. .+.|++|++|.+|+|||+++++.++++..|...|..+.|+ +.++++++.|.+|.|||+..
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 4678999999999994 5699999999999999999999999999999999999997 56999999999999999876
Q ss_pred Cc---eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 218 ~~---~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.. +...+.+|...|+.+.| ++++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+.|.+|
T Consensus 307 ps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntI 382 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 382 (499)
T ss_pred chHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceE
Confidence 53 44556899999999999 56799999999999999999999999999999999999886 8999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------EEEEeecCCCCeEEEEEccC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---------~~~~~~~h~~~V~~l~~sp~ 365 (715)
++||+..|++++.+++|..-|.||.|. .+.|++|+.||+|+|||+.++. ++..+..|.+.|..+.|
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--- 457 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--- 457 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---
Confidence 999999999999999999999999995 6779999999999999997654 34556678999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+...|++++.|.+|.|||+.+...
T Consensus 458 D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 458 DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cceEEEeccCCCeEEEEEcCCCCc
Confidence 678899999999999999976543
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=268.35 Aligned_cols=288 Identities=22% Similarity=0.384 Sum_probs=262.5
Q ss_pred ecCCCCccEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCSINRVLWTP---TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp---dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+|+.+|..++||+ +|-+|++++.||.-.|-+-+++..+-++.+|.+.|.+.+++.+..+.++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4679999999999985 8999999999999999999999999999999999999999988888899999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
-++..+..+ .|+.-|..++|+.|.++|++|+.+..++|||++..+ ....+.+|.+.|+.+.|....+.|+++++|++|
T Consensus 89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 999888776 588899999999999999999999999999997644 456788999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
|+||.++++.+.++. .+..|+++.++.||++|.++ ..+.|.+||..+...++.++ -...|.+.+++| +..++++|+
T Consensus 168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGg 243 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGG 243 (334)
T ss_pred EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccC-CCceEEecC
Confidence 999999999999987 67789999999999976655 57789999999999988887 456789999999 779999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+|..++.||+.++..+.....+|-++|.|+.|+|||.+.++||.||+|+||......
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999998887778899999999999999999999999999999886533
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=294.85 Aligned_cols=303 Identities=21% Similarity=0.332 Sum_probs=266.6
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
-..++.+|+..|.++++|.|...+++|+. +.|+||+.++.++++++.. +.+.+..|.|.++++++|..+|.+.|||+
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 34578899999999999999877777654 5799999999999999875 38899999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----CeeEE--Ee-----cccCCceEEEEEcCCCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEER--SL-----TGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-----~~~~~--~l-----~~~~~~I~si~~spdg~ 283 (715)
.+..++.++..|.+.|++++.++|++.+++++.|.+|++||+.- +...+ .+ -...+.|.|+++|||++
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999731 11111 11 12457899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
+|+++--|++|+||-+++-+....+-+|.-+|.|+.+++|+++|+||+.|+.|+||-+.-|.|-+++-+|+..|.++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQN 443 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 443 (715)
| ...++++++.|+.|+-||-..-..+ ..+.+|...|+|++.+++|.++++++.|.+|++|...++--..++..+....
T Consensus 602 P-~~~~FFt~gKD~kvKqWDg~kFe~i-q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErE 679 (888)
T KOG0306|consen 602 P-KTHLFFTCGKDGKVKQWDGEKFEEI-QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGERE 679 (888)
T ss_pred c-cceeEEEecCcceEEeechhhhhhh-eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhH
Confidence 9 8899999999999999998665544 4555799999999999999999999999999999987755544444443333
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-30 Score=268.47 Aligned_cols=244 Identities=28% Similarity=0.497 Sum_probs=226.8
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+..|...|.++.|++++++|++++.||.|++||+.+.+.+..+..|...|.++.|++++++|++++.|+.|++||+.+.
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence 45578888999999999999999999999999999998888899999999999999999888888888999999999988
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+....+..|...|.+++|++++.++++++.|+.|++||+++.+.+..+..+...|.+++|+++++.|++++.|+.|++||
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 88888888999999999999988888888899999999998888888888888999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
+++++.+..+..+...+.+++|++++.++++++.|+.|++||+++++.+..+..|...|.+++|++ ++.+|++++.||.
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 284 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCe
Confidence 999888888877888999999999988888888899999999999999999999999999999999 7899999999999
Q ss_pred EEEEE
Q 005096 379 IFHWL 383 (715)
Q Consensus 379 I~iwd 383 (715)
|++|+
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 99996
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-31 Score=254.73 Aligned_cols=289 Identities=17% Similarity=0.296 Sum_probs=247.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.|.+|..+|+.|.|+.+|.+|++++.|.++.||-..+++.+-++.+|.+.|+||..+.+.++|++|+.|.+++|||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECC-------CCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~-----Dg~V~iwdl~-------~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
+.+..++ ....|..+.|+.++++++.+++ .+.|.++|++ ..+....+..+...++.+.|.+-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998875 5678999999999998887765 3679999997 3445677777889999999999999999
Q ss_pred EEeCCCcEEEEECCCCcee-EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 287 SGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
+|.+||.|.+||+++++.+ ...+.|...|+.+.+++|..++++++.|.+-++||+++.+.++++. .+.+|++.+++|.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPL 242 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccc
Confidence 9999999999999998554 4457789999999999999999999999999999999999999998 6788999999995
Q ss_pred CCCEEEEEeCCCc-EEEEEcCCCC-----------ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 366 HEEYFVSGSLDGS-IFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 366 ~~~~l~sgs~DG~-I~iwd~~~~~-----------~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+.+|+.|+.+-. |.--+.+.++ +.+....+|-++|++++|+|+|+..++|++||.|++...+.
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 5555555544321 2222222221 11233457999999999999999999999999999986643
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-31 Score=295.80 Aligned_cols=248 Identities=27% Similarity=0.492 Sum_probs=228.0
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~-~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+.+|...|++++|++|+++|++++.|++|+|||+ ..+..++++.+|...|++++|++++++|++|+.|++|+|||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 3455899999999999999999999999999999999 556899999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCc--eEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWD--VKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~--I~si~~spdg~~L~sgs~D 291 (715)
++++++..+..|.+.|++++|++++++|++++.|+.|+|||+.++. +...+..+... ++++.|++++++|++++.|
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999999999988 45666666555 9999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCce---EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCeEEEEEccCCC
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMV---LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHE 367 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I---~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-~~~V~~l~~sp~~~ 367 (715)
+.+++||+++++++..+.+|...+ .+...+..+.++++|+.|+.|++||+.++..+..+.+| ...+..+++++ ..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE 434 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence 999999999999999998887753 34455678999999999999999999999999999999 89999999999 88
Q ss_pred CEEEEEe--CCCcEEEEEcC
Q 005096 368 EYFVSGS--LDGSIFHWLVG 385 (715)
Q Consensus 368 ~~l~sgs--~DG~I~iwd~~ 385 (715)
+++++++ .|+.|++|..+
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeeeecCcCCCceEEEecCC
Confidence 9999888 78899999764
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=270.24 Aligned_cols=286 Identities=23% Similarity=0.351 Sum_probs=255.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE--------eccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--------QAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l--------~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
..-.+.+.-+.|..|||||++|++|+.||-|.|||..++++.+.+ --++..|.|+.|+.|...|++|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 334466777899999999999999999999999999998876554 347889999999999999999999999
Q ss_pred EEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 210 IKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
|+||.++++.+++.+. .|...|+|+.|+.|+..+++++.|.+|+|.-+.++++++.+.+|...|+...|++||..++++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999999988886 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEecc--CCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecC---CCCeEEEEE
Q 005096 289 GKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH---RKDVTALAW 362 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~~--~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h---~~~V~~l~~ 362 (715)
+.||+|++|+.++.+|+.+++. .+..|.++..-| +-..+++|...++|+|.++. |..+++|... .+...+.+.
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence 9999999999999999998874 455678887777 55789999999999999986 8888888643 355777788
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+| .++++.+.++|+.++.|.+.+++.. .....|+..|..++-+|..++|++-++||.+++|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE-~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLE-RTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCcee-eeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98 8999999999999999999877655 44556899999999999999999999999999995
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=291.26 Aligned_cols=290 Identities=25% Similarity=0.430 Sum_probs=261.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.++.-+.+|..++|+|...+|+++-.+|.|.+||..-+.++..|..|++.|..|+|+++..++++|++|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+++.++.+|.+.|+.+.|++.--+|+++|+|-+|+||+..+.+++..+.+|..-|.|..|+|...++++++-|.+|+|||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-----------------------------eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EE
Q 005096 299 AKSGR-----------------------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--EL 347 (715)
Q Consensus 299 l~s~~-----------------------------~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~ 347 (715)
+..-+ ....+++|+..|+-++|++.-.+|++|+.|+.|++|.+...+ ++
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 85211 123457899999999999999999999999999999987544 46
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+.++|...|+++.|+| ..++|++.++|++|+|||+.....+..+.. ..+..|.++.+|..+++++|- |+-+.||.+
T Consensus 244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeec-CCceEEEEE
Confidence 77889999999999999 899999999999999999988877766654 456899999999998777665 566778887
Q ss_pred CCCC
Q 005096 428 NRPG 431 (715)
Q Consensus 428 ~~~~ 431 (715)
+++.
T Consensus 321 eREr 324 (1202)
T KOG0292|consen 321 ERER 324 (1202)
T ss_pred cccC
Confidence 6543
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-31 Score=256.21 Aligned_cols=280 Identities=23% Similarity=0.410 Sum_probs=238.7
Q ss_pred EEEEEcCC-CCEEEEEe-------CCCeEEEEeCCCCceEEEEec--cCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 005096 148 NRVLWTPT-GRRLITGS-------QSGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 148 ~~l~~spd-g~~Latgs-------~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~ 216 (715)
.++.|||- .++||++. ..|++.|.++...+-+.++.. -+..+..++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57788882 33454442 368999999875444444432 3578999999986 4678899999999999965
Q ss_pred CC-ceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-CCEEEEEeCCCc
Q 005096 217 MN-NVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSL 293 (715)
Q Consensus 217 ~~-~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~ 293 (715)
.. ..+..++.|+..|.++.|+.. ...+++++.|++|++||......+.++.+|...|...+|+|. .++|++++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 43 567788999999999999874 456788899999999999999999999999999999999994 679999999999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++|||++.......+..|..+|.|+.|+. +.+.|++|+.|+.|++||+++.+ .+.++.+|.-.|+.|+|+|....+|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999997544445888999999999998 67889999999999999999865 47888999999999999998899999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEec
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl 427 (715)
+++.|-+++|||.......++....|...|..+.|+.- ..++|+++.|+.++||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999999999888777888889999999999884 689999999999999973
No 48
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=4.8e-31 Score=259.36 Aligned_cols=295 Identities=21% Similarity=0.363 Sum_probs=252.0
Q ss_pred eeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceEEEEeccCCCEEEEEE
Q 005096 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMVW 194 (715)
Q Consensus 133 ~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~------------------~~~~~~l~~h~~~V~~l~~ 194 (715)
.++....+..|+..+.+.+|++||.++++|+.|..|+|.|++. .-.++++..|...|+++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3455567788999999999999999999999999999999762 1357788889999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---ccc
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGH 269 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~ 269 (715)
+|...+|++++.|++|++||+.....++.++ .....|.+|.|+|.|.+|++|.+..++++||+++.++...- ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999999998765444332 34568999999999999999999999999999998776544 358
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cC-CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
.+.|+++.+++.+++.++++.||.|+|||--+++|+.++. .| ...|++..|..+++||++.+.|..|++|.+.+++.+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8899999999999999999999999999999999998885 33 457999999999999999999999999999999999
Q ss_pred EEeecCCC-----CeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 348 ESFRGHRK-----DVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 348 ~~~~~h~~-----~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
.++.+... --+...|+. .+++++.- -..+.+.-||.++.........+|.+.+..+.-+|.+..+++|+.|..
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 99876421 123445655 45555443 345679999999998888888899999999999999999999999999
Q ss_pred EEEEecC
Q 005096 422 TKFWCRN 428 (715)
Q Consensus 422 I~iWdl~ 428 (715)
+++|-..
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999753
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.2e-30 Score=248.79 Aligned_cols=277 Identities=17% Similarity=0.331 Sum_probs=249.6
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE--EeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~--l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd 214 (715)
..+.+|...|.+|+|+-+|..|++|+.|+++.||+++..+..+. ..+|.+.|..++|++. .++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987765544 4678899999999875 57899999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+..++....+....+.| -+.|+|++.++++++.|..|.+.|.++.+...... ....+..++|+.++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999888876655555 47899999999999999999999998877666554 55678899999888888877778999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.|...-+-+.+..++.|.....||.|+|+|+|||+|+.|-.+.+||+...-+++.+..++-.|..|+|+- ++++||+++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
+|..|-|=++.++..+.++. +++....++|+|...+||.+++|
T Consensus 251 EDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecC
Confidence 99999999999999888776 57899999999999999988876
No 50
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=1.8e-30 Score=292.71 Aligned_cols=292 Identities=23% Similarity=0.391 Sum_probs=255.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEe--CCCeEEEEeCCC------------CceEEEEeccCCCEEEEEEcCCCCEEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGS--QSGEFTLWNGQS------------FNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs--~dg~I~Iwd~~~------------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs 205 (715)
+..+...|.+|+.+||+..++||+ .||.++||+.+. .+.+.....|.+.|+|+.|++||++||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 445566799999999999999999 899999998442 234556678999999999999999999999
Q ss_pred CCCcEEEEeCCC------------------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec
Q 005096 206 DGGAIKYWQNNM------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 267 (715)
Q Consensus 206 ~dg~I~iwd~~~------------------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~ 267 (715)
+|+.|.||+... .+.+..+.+|...|.+++|++++.+|++++.|++|.|||..+.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999998762 12566778999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC------CCceEEEEEcCCCCEEEEEE----CCCeEE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTAS----KDQIIK 337 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~------~~~I~sl~~spdg~~Lasgs----~dg~I~ 337 (715)
+|...|..+.|+|-|++|++-++|++|+||++.+....+.+.++ ...+..+.|||||.+|++.. ...++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999999999999999999999998877666666543 23578899999999999864 234799
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccC----CC------------CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPF----HE------------EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~----~~------------~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
|.+-.+++.-..|.+|...+.+++|+|. .. .++|+|+.|++|.||.......++.+.......|
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 9999999999999999999999999883 11 1788999999999999988888777777778899
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 402 ~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.+++|++||..|+++|.||+|.+..+++.+
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999999999986544
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.9e-30 Score=287.19 Aligned_cols=279 Identities=26% Similarity=0.387 Sum_probs=255.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE-EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+...|.+..|. ..++++++.|.+|++||..++..+.. +.+|.+.|.++++...+++|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 467788999998 55899999999999999999999888 999999999999988789999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
...+.+|.+.|.++... ..++++|+.|.+|++||+.++..+..+.+|.+.|+++.++ +.++++|+.|++|++||++
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999999874 5678889999999999999999999999999999999998 8899999999999999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
+++++.++.+|...|.++.+... +++++|+.|+.|++||+++. +++..+.+|..-|..+.+ .+++|++++.|++|
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTI 435 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccE
Confidence 99999999999999999988755 88999999999999999999 999999999999988877 57899999999999
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++||..++..+..+...|...|+.+++. ...+++++.|+++++||+.....
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 9999988887766665467889999887 56789999999999999965444
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-29 Score=246.91 Aligned_cols=288 Identities=20% Similarity=0.307 Sum_probs=249.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~--dg~I~iwd~~ 216 (715)
.+....+.|++|.|+.+|.+|++++.|.+|+|||..+++.++++..++..|..++|....+.++.++. |.+|++.++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 34456789999999999999999999999999999999999999999999999999988888877776 8899999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+++.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+..... ..++|+|+|-++|++.....|+|
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEE
Confidence 9999999999999999999999999999999999999999997777666654333 35789999999999988889999
Q ss_pred EECCCC--ceeEEec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe---EEEEEccCCCC
Q 005096 297 WDAKSG--RELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPFHEE 368 (715)
Q Consensus 297 wDl~s~--~~~~~~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V---~~l~~sp~~~~ 368 (715)
||+|+- ....++. ....+.+.|.||+||++|+.++..+.+++.|.-+|..+.++..+...- ...+|+| +++
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~ 245 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSK 245 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCc
Confidence 999963 3333443 346778999999999999999999999999999999999888765443 6788999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+|++|+.||+|.+|+++++.........+.+.+.++.|+|....++++ +..+.+|-.+..+
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 999999999999999999988877776678899999999887666655 5789999765443
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-30 Score=272.82 Aligned_cols=242 Identities=22% Similarity=0.334 Sum_probs=223.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
++.-..-+|++..|-..-+++++|+.|..|+||+..+++.++.+..|..-|+||+.+|..-+++++++|-+|++||.+.+
T Consensus 50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 44455668888999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -ceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC--CEEEEEeCCCcE
Q 005096 219 -NVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK--SLLVSGGKDSLV 294 (715)
Q Consensus 219 -~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg--~~L~sgs~Dg~I 294 (715)
.+..++.+|...|.+++|.| |.+.+++++.|++|+||.+.+.....++.+|...|+||++.+-| .+|++|++|.+|
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 67888999999999999998 55889999999999999999999999999999999999998754 499999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
+|||..+..|+.++++|...|.++.|+|.-.+|++|++||+|+||+..+.+...++.-....|.||+-.+ +++.+++|.
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~ 288 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGF 288 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEec
Confidence 9999999999999999999999999999999999999999999999999999888888889999999888 667788888
Q ss_pred CCCcEEE
Q 005096 375 LDGSIFH 381 (715)
Q Consensus 375 ~DG~I~i 381 (715)
++|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 7776643
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.5e-29 Score=242.20 Aligned_cols=245 Identities=23% Similarity=0.444 Sum_probs=217.0
Q ss_pred ceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC---ceeeee-cCCCCCeEEEEEecCCCEEEEEECCCc
Q 005096 177 NFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMN---NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTT 251 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~---~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~ 251 (715)
..++.+.+|.+.|..++|++- |..|++|+.|+.|+||+...+ .++..+ ..|+..|++++|+|.+++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 456778899999999999998 889999999999999998852 333333 468999999999999999999999999
Q ss_pred EEEEECC--CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceEEEEEcCCCCE
Q 005096 252 VKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 252 V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
+.||.-. +.+++.++.+|.+.|.|++|+.+|++||+++.|..|-||.+..+ +++..+..|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9999864 45778899999999999999999999999999999999998754 467788999999999999999999
Q ss_pred EEEEECCCeEEEEECC---CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE
Q 005096 327 VLTASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~---t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~ 403 (715)
|++++.|++|++|+-. ...++.++.+|...|.+++|++ .+..|++++.|++|+||.... .+...|+..+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc-----CcchhcccceEe
Confidence 9999999999999876 4678999999999999999999 789999999999999998652 334457889999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.|. ...|++++.|+.|+||....
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC
Confidence 9998 55899999999999998864
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.9e-30 Score=251.51 Aligned_cols=252 Identities=25% Similarity=0.387 Sum_probs=222.9
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
+..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++.. .+....+++|++.|..+.|..|++.|++++.|.+|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 455778999999999999999999999999999999654 3556677899999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
++++.++.++.|...|+++.-+.-|. ++.+++.|++++|||+|+...+.++. .+..++++.|..++..+++|+.|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 99999999999999999998655454 67788999999999999988888876 56789999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC---CceEEEeeccC----CCEEEEEEcCC
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHD----NTVWDLAWHPI 409 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---~~~~~~~~~h~----~~V~~l~~spd 409 (715)
++||++..+.+..+++|...|+.|..++ ++.++.+-+.|.+|++||++.. ...+.++.+|. .....++|+++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999 8999999999999999999754 33345554432 34567899999
Q ss_pred CCEEEEEECCCeEEEEecCCCCC
Q 005096 410 GYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+..+.+|+.|..+++||....+-
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRI 300 (338)
T ss_pred CCccccccccceEEEeecccccE
Confidence 99999999999999999865443
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-30 Score=264.92 Aligned_cols=276 Identities=17% Similarity=0.329 Sum_probs=232.7
Q ss_pred eEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEE
Q 005096 81 AVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI 160 (715)
Q Consensus 81 ~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~La 160 (715)
...|+++...+.+..+|....... .-+.+++.+|..+|..|.||||.++|+
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~-----------------------------~kl~~tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVH-----------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcc-----------------------------eeeeeeeecccCceEEEEECCCCCeEE
Confidence 456777777777777776542221 123457899999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
+|+.|..+++||+.++.....+.. +...+.+++|.||+..+++|+.|+.|..||++.+....-.......|.+++++.|
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 999999999999999988777653 4688999999999999999999999999999866533322233457999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc--eEE
Q 005096 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM--VLC 317 (715)
Q Consensus 240 ~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~--I~s 317 (715)
|+++++.+.|..|++++.++......+. ....|++++++.|++++++.-.+..|.+||++..+.++++.+|+.. |..
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 9999999999999999998765544443 5678999999999999999999999999999998889898888754 333
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 318 VKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 318 l~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
-+|-- +..++++|++|+.|+||+.++++.+.++.+|...|++++|+|.+..++|++++||+|+||....
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 34543 5689999999999999999999999999999999999999999999999999999999997753
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.4e-31 Score=268.22 Aligned_cols=284 Identities=21% Similarity=0.380 Sum_probs=254.3
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
..+..|.+.|..+.|-.+...|++|+.|..|++|+....+ .+.++.+..+.|+++.|..+++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4577899999999999998999999999999999977665 67788888899999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+...+..++.+|.+.|+++.|......+++++.|.+|++||+.+..+.+++. ....+.+|+.+ ...++++-.|++|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999999887779999999999999999887777665 34456667666 56788999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC----CCCeEEEEEccCCCCEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h----~~~V~~l~~sp~~~~~l~ 371 (715)
+||+++..++.....+. .|+++..+.++..|++++.|.++.+.|+++......+... ....+.+.||| ++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceee
Confidence 99999999998887554 8999999999999999999999999999999888877632 34589999999 999999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCC-CEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+|+.||.|+||++.+++....+...+.. .|++++|++.|..|++++.++.+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999887777666655 799999999999999999999999993
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.5e-31 Score=266.56 Aligned_cols=288 Identities=21% Similarity=0.343 Sum_probs=246.3
Q ss_pred EEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.-.|.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...++..++..|++.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34679999999999999987 7899999999999999999999999999999999999986 67889999999999988
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLV 294 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I 294 (715)
+.. ...++ ..+..+..|.-+..++.+++|+. .|.|||......+..+......|.++.|+|... +|+++..|+.|
T Consensus 137 ~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cCC-cceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 764 33333 33556777777777888998886 499999999899999998889999999999764 67777799999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
.|||++++..+..+. ....-+.|+|+|..-.++++++|..++.||++... .+..+.+|.+.|.++.|+| .+.-|++|
T Consensus 213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Efvsg 290 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSG 290 (433)
T ss_pred EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchhccc
Confidence 999999998887765 34456789999988889999999999999999754 5788889999999999999 78899999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.|.+|+||.++............-..|.|+.|+-|.++|++||+|+.|++|.-+..++
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999999877654333333345799999999999999999999999998765443
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-29 Score=274.94 Aligned_cols=294 Identities=23% Similarity=0.401 Sum_probs=245.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+..|.++|..|+|++++.++++|+.|-+|+||+.++.+++.++.+|-+-|..+.|++.--+|+++++|-+|+||++.+.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-----------------------------eEEEeccc
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------------------------EERSLTGH 269 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-----------------------------~~~~l~~~ 269 (715)
+++..+.+|...|.|..|+|....++++|-|-+|||||+...+ ....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 9999999999999999999999999999999999999984211 13456789
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
...|+-++|+|.-.+|++|++|..|++|..+..+ .+-+..+|.+.|+|+-|++..++|++.++|++|+|||+...+.+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 9999999999999999999999999999987554 34556789999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE---------------e------------ecc---
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI---------------H------------NVH--- 397 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~---------------~------------~~h--- 397 (715)
.+|+........++.+| ..+++++|-+.| +.||.++.+.....+ . ..+
T Consensus 286 ~tfrrendRFW~laahP-~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~ 363 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHP-ELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT 363 (1202)
T ss_pred eeeeccCCeEEEEEecC-CcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc
Confidence 99998899999999999 778777765444 445554422211110 0 001
Q ss_pred -CCCEEEEEEcCCCCEEEEE-E-CCCeEEEEecCCCCCcc
Q 005096 398 -DNTVWDLAWHPIGYLLCSG-S-NDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 398 -~~~V~~l~~spdg~~L~sg-s-~Dg~I~iWdl~~~~~~~ 434 (715)
...+.+++++|....+..+ . +.|...++.+.+..+..
T Consensus 364 ~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~ 403 (1202)
T KOG0292|consen 364 LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGV 403 (1202)
T ss_pred ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccccc
Confidence 2457788888875544444 3 35666677765554433
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=270.22 Aligned_cols=288 Identities=15% Similarity=0.302 Sum_probs=248.4
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|+..+.+.++.. ...-.+.+...+..|+||+..... -+.++
T Consensus 209 ~~~gH~kgvsai~~fp----~~~hLlLS~gmD~~vklW~vy~~~-------------------------------~~lrt 253 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFP----KKGHLLLSGGMDGLVKLWNVYDDR-------------------------------RCLRT 253 (503)
T ss_pred eccCCccccchhhhcc----ceeeEEEecCCCceEEEEEEecCc-------------------------------ceehh
Confidence 4688888888877754 345566677788999999875421 12346
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~ 218 (715)
+.+|+..|.+++|+.+|..+++++.|+.|++||+++++++..+.. ...++|+.|.+|+ +.+++|+.|+.|+.||++++
T Consensus 254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 889999999999999999999999999999999999999988864 5678999999998 88999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
+++..+..|-..|..|.|.++++++++.++|++|+||+.+....+..+. .+....-+|..+|+++++++-+.|+.|.||
T Consensus 333 kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 333 KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEE
Confidence 9999999999999999999999999999999999999998766554433 233456799999999999999999999999
Q ss_pred ECCCC---ceeEEeccCC--CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 298 DAKSG---RELCSFHGHK--NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 298 Dl~s~---~~~~~~~~~~--~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.+... .....+++|. +.-..+.|||||++|++|+.||.+.+||.++.+.+..++.|+..+..+.|+|.....+|+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence 87542 2233455554 345678999999999999999999999999999999999999999999999988899999
Q ss_pred EeCCCcEEEEE
Q 005096 373 GSLDGSIFHWL 383 (715)
Q Consensus 373 gs~DG~I~iwd 383 (715)
|+.||.|++||
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 99999999996
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-29 Score=272.76 Aligned_cols=280 Identities=23% Similarity=0.379 Sum_probs=243.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
-..+-++|+ ..+.|++|... .|++|+..+++.......++..|+++.|+++|++|++|..+|.|.|||..+.+.+..+
T Consensus 178 fY~nlldWs-s~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 345567888 44467766554 6999999999988877777899999999999999999999999999999999888888
Q ss_pred cC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005096 225 SA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 225 ~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~ 302 (715)
.. |...|-+++|. +..+.+|+.|+.|.++|++..+.... +.+|...|..++|++|+++|++|+.|+.|.|||....
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 88 99999999997 77899999999999999987665554 8889999999999999999999999999999999888
Q ss_pred ceeEEeccCCCceEEEEEcC-CCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCc
Q 005096 303 RELCSFHGHKNMVLCVKWNQ-NGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS 378 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~ 378 (715)
+.+..+..|.+.|.+++|+| ...+||+|+ .|++|++||..+++.+..+. ....|.+|.|++...+++.+.+ .++.
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 88999999999999999999 667888864 79999999999999888876 6778999999995555555543 5678
Q ss_pred EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 379 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
|.||++.+.+. ...+.+|...|..++++|||..|++|+.|.++++|++-..
T Consensus 413 i~lw~~ps~~~-~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPSMKL-VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccccce-eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999988444 4555689999999999999999999999999999998654
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=263.22 Aligned_cols=290 Identities=21% Similarity=0.305 Sum_probs=245.8
Q ss_pred ecCCCCccEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~-Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+....+.|++|+|+|...+ +|+++ .-.|.||+..+....+.+......|.+++|..||++|++|+..|.|+|||..+
T Consensus 21 ~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 34445678999999996644 44443 34699999999888888888899999999999999999999999999999777
Q ss_pred CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVK 295 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~ 295 (715)
...+..+..|...|..+.|++.+ ..|++|++|+.+++||+.+......+.+|.+.|+|.+|++-.. ++++|+.||+|+
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 77888889999999999999955 5678889999999999999888778999999999999998654 899999999999
Q ss_pred EEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 296 LWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 296 iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+||+++. ..+.++. |...|.++.+-+.|..|++++ ...|+|||+.+|. .+..+..|...|+|+++.. ++..|+++
T Consensus 180 l~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~ 256 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSG 256 (487)
T ss_pred EEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeec
Confidence 9999987 6666666 899999999999999999886 5689999999654 5555666999999999998 77999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
+-|+.|++||+.+-+...... -.++|.+++.++++..++.|-.||.+.+-+...+.+..
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s 315 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPS 315 (487)
T ss_pred ccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeeeehhhcccCCC
Confidence 999999999976554443333 46799999999999999999999999887654444433
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=250.40 Aligned_cols=245 Identities=20% Similarity=0.290 Sum_probs=215.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..+.+|+++|+|+.||.||.+||||+-+|.|+||+..++.....+...-..|.-+.|+|.+..|+.|+.||.|.+|.+.+
T Consensus 100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 36789999999999999999999999999999999999999888876778899999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-----------------------------
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------------------------- 268 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~----------------------------- 268 (715)
......+.+|...+++=.|.++|++++++..||+|++||..++..+..+..
T Consensus 180 ~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~ 259 (399)
T KOG0296|consen 180 QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACG 259 (399)
T ss_pred cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEE
Confidence 888889999999999999999999999999999999999988776655431
Q ss_pred ----------------------cCC---ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC
Q 005096 269 ----------------------HGW---DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 269 ----------------------~~~---~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd 323 (715)
+.. .|.++.|+.+=.+.++|+-||+|.|||+...+....+. |...|+.+.|.+
T Consensus 260 ~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~- 337 (399)
T KOG0296|consen 260 VNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN- 337 (399)
T ss_pred EccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-
Confidence 001 12222333334567889999999999999776555444 888899999998
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 324 GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
..+|++++.+|.|++||.|+|.++.++.+|...|.++++++ +.++++|++.|++.+||++.
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 78999999999999999999999999999999999999999 89999999999999999874
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=266.60 Aligned_cols=271 Identities=22% Similarity=0.362 Sum_probs=226.9
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
.+|...|.+++++.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|..+|.+.+||+.+...
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 46778899999998776666654 578999999999999888654 889999999999999999999999999999999
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Cc--eeEEec-----cCCCceEEEEEcCCCCEEEEE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-----GR--ELCSFH-----GHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s-----~~--~~~~~~-----~~~~~I~sl~~spdg~~Lasg 330 (715)
+.++.+|.+.|++++.++|++.+++|+.|.+|++||..- +. .+..++ .....|.|+++|||+++|+++
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 999999999999999999999999999999999999742 11 111111 245779999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 331 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 331 s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
--|.+|+||-+++.+...++.+|.-+|.|+.+++ +..+|+||+.|.+|+||-++-+.+-..++ +|++.|.++.|.|..
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKT 604 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccc
Confidence 9999999999999999999999999999999999 89999999999999999988777665555 699999999999999
Q ss_pred CEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPE 465 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 465 (715)
.++.+++.|+.|+-||-++-..... ..++-....+++...+|.+.+..
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~iq~-------L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEEIQK-------LDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred eeEEEecCcceEEeechhhhhhhee-------eccchheeeeeEEcCCCCeEEec
Confidence 9999999999999998754333222 12333444455555555444443
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.2e-28 Score=292.27 Aligned_cols=262 Identities=20% Similarity=0.305 Sum_probs=223.6
Q ss_pred CCeEEEEeCCCCceEEEE-----eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--------eeeeecCCCCCe
Q 005096 165 SGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESV 231 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--------~~~~~~~h~~~I 231 (715)
+|.+++|+..+.+....+ ..|...|.+++|++++++|++|+.|+.|+||+++... ....+ .+...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 677888988876655443 3488999999999999999999999999999975421 11122 235678
Q ss_pred EEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 232 RDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 232 ~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+++|++ ++.+|++++.|++|+|||+.+++.+..+.+|...|++++|++ ++.+|++++.|++|+|||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 468899999999999999999999999999999999999996 78899999999999999999998888887
Q ss_pred cCCCceEEEEEc-CCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 310 GHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 310 ~~~~~I~sl~~s-pdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
. ...|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 616 ~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 4 4679999995 579999999999999999998866 467788999999999997 5788999999999999999753
Q ss_pred -----CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 388 -----TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 388 -----~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
...+..+.+|...+++++|++++.+|++|+.|+.|++|+....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 2344556679999999999999999999999999999997654
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=240.37 Aligned_cols=251 Identities=22% Similarity=0.337 Sum_probs=223.5
Q ss_pred eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
....+..+.+.|..+.|+-||+|.++++.|.+|++|+...+.++.++.+|...|.+++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
++++.++.+.+|...|+.+.|+.+...+++|+.|..|++||.++. +.+..+......|.+|.++ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999864 6778888888899999986 567999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC--EEEEEEcCCCCEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT--VWDLAWHPIGYLL 413 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~L 413 (715)
++.||++.+.....+- ...|++++|++ +++..++++.|++|++.|-.+++.+.. ..+|.+. -..++++.....+
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s-YkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS-YKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH-hcccccceeeeeeeecccceeE
Confidence 9999999998776654 56799999999 889999999999999999988776543 3456554 3456777778899
Q ss_pred EEEECCCeEEEEecCCCCCcc
Q 005096 414 CSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
++|++||.|++||+.......
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EeccCCceEEEEEeccceeee
Confidence 999999999999996544433
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=277.91 Aligned_cols=299 Identities=17% Similarity=0.273 Sum_probs=224.8
Q ss_pred ceeeeEEEEecC-CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC----------CCEEEEEEcC--
Q 005096 130 SFAAKFVHTSLN-KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD----------HAIRSMVWSH-- 196 (715)
Q Consensus 130 ~~~~~~~~~~l~-~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----------~~V~~l~~sp-- 196 (715)
.+...++...+. .|++.|.++.||+||+|||+|+.|+.|+||.+...+....-.... +.+.-+..+.
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 344555666777 999999999999999999999999999999876633311111000 0011111111
Q ss_pred -CCC--EEEEEeCCCcEEEEeCC----CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc
Q 005096 197 -NDN--WMVSGDDGGAIKYWQNN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 197 -dg~--~L~tgs~dg~I~iwd~~----~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
.++ ..-.+.....+ +.+.. ..+....+.+|.+.|.+|.|+.+ .+|++++.|.+|++|++...+++..|. |
T Consensus 332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-H 408 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-H 408 (712)
T ss_pred ccccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-c
Confidence 001 11112222222 22211 13456677899999999999965 689999999999999999999999987 9
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 270 GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 270 ~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
.+-|+||+|+| |.++|++|+-|+.|+||++...+.+ .+.....-|++++|.|||++.++|+.+|.+++|+++..+...
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 99999999999 6789999999999999999866544 444456889999999999999999999999999999877765
Q ss_pred Eeec--C------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEEECC
Q 005096 349 SFRG--H------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 349 ~~~~--h------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sgs~D 419 (715)
.+.. + ...|+.+.|.+.+.+.|++.+.|..|+|||.++...+.++...+. ..-....|+.||++|+++++|
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 4431 1 237999999997777788889999999999977766655553333 234577899999999999999
Q ss_pred CeEEEEecCCCCC
Q 005096 420 HTTKFWCRNRPGD 432 (715)
Q Consensus 420 g~I~iWdl~~~~~ 432 (715)
..|+||+++....
T Consensus 568 s~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 568 SWVYIWKNDSFNS 580 (712)
T ss_pred ceEEEEeCCCCcc
Confidence 9999999865544
No 68
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=3e-29 Score=259.91 Aligned_cols=283 Identities=18% Similarity=0.303 Sum_probs=246.6
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
....|..-|.++.+|...++++||+. |.|+|||+..- ..+..+. ..+..|+++.+.+|++.|++|++-.+|.||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 34568999999999999999999986 56999998642 2233333 245679999999999999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
|+.... ++..+....-.+.++++++|.+..++|+.||.|.|||+.+...++.|.+|.+.+.||.++.||..|.+|+-|
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 987654 444444555678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++||.||+++++.+.... ..+.|.++.++|+++||++|-.++.|.|.... +.....+..|++.|.++.|.. .+++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfv 649 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFV 649 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceee
Confidence 999999999998776654 67789999999999999999999999998865 555667778999999999999 899999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+.+.|..+..|..-.+..++...+ .+.|.++.++.|.++|+||+.|....||.+
T Consensus 650 StGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999988887766654 678999999999999999999999999875
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.8e-29 Score=254.62 Aligned_cols=283 Identities=21% Similarity=0.360 Sum_probs=253.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.-.|+++...+....++||+.|..+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 35789999998888999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc--CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH--GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~--~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
...|...|+.+..++.+.||++++.|+++.+.|++++..+...... .-.+++.+|+|||.+|.+|..|+.|+|||+++
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999888776643 34589999999999999999999999999999
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
...+..|.+|.+.|..|+|+.+|-||+++++|+.|++||+|..+.+.++...+ ..|.++.|.. .+.+|+.++.|-.|+
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEE
Confidence 99999999999999999999999999999999999999999999888877443 4799999998 888999888877777
Q ss_pred EEEcCCCC-ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 381 HWLVGHET-PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 381 iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++-.+.. ........|.+..+++.|..+..+|++++.|..++|+.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77644332 233445567788999999999999999999999999865
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=225.13 Aligned_cols=287 Identities=22% Similarity=0.393 Sum_probs=241.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------C---------ceEEEEeccCCCEEEEEEcCCCCEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------F---------NFEMILQAHDHAIRSMVWSHNDNWMVS 203 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~------~---------~~~~~l~~h~~~V~~l~~spdg~~L~t 203 (715)
.+...+..|.+++|+|.|.+.++|+...+++|..... . ...+.-+.|.+.|.|.+|+++|.+|++
T Consensus 27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4445677899999999999999999999999874221 1 122344568899999999999999999
Q ss_pred EeCCCcEEEEeCCCCce-----eeeecCCCCCeEEEEEecC----CCEEEEEE-CCCcEEEEECCCCeeEEEecccCCce
Q 005096 204 GDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRT----DLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDV 273 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~spd----~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I 273 (715)
|++|.+|++..++...+ ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|..++.....+.+|.+-|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999987654322 2345678999999999754 35566654 47788899999999999999999998
Q ss_pred EEE-EEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 274 KSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 274 ~si-~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
.++ .|+ +-.|++|+.|.+|++||++-..++.++.. ..+.|.+++..|.|++|++|-.|....+||++.++
T Consensus 187 lalyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 187 LALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 876 454 78999999999999999999888887642 13568999999999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC---CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeE
Q 005096 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 422 (715)
Q Consensus 346 ~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I 422 (715)
.+..|..|...|.++.|+| +..++++|+.|..|++-|+... +....+...|++.+..+.|++....+++.+.|.++
T Consensus 265 ~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence 9999999999999999999 9999999999999999998643 23344556799999999999999999999999999
Q ss_pred EEEecC
Q 005096 423 KFWCRN 428 (715)
Q Consensus 423 ~iWdl~ 428 (715)
.+|.++
T Consensus 344 tlwa~~ 349 (350)
T KOG0641|consen 344 TLWALN 349 (350)
T ss_pred EEeccC
Confidence 999874
No 71
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=245.32 Aligned_cols=293 Identities=19% Similarity=0.287 Sum_probs=253.9
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+.+.+.||++.|..++.......+.+++.|.+.+||.+++++++..+.+|.+.|++|+|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 55678999999999999988888999999999999999999999999999999999999999999999999999999961
Q ss_pred ------CC------------------------------C----ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 005096 216 ------NM------------------------------N----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 216 ------~~------------------------------~----~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iw 255 (715)
.. + ..+..+.+|...|.+..|...+..+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 00 0 0123456788889999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCC
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
|+++++.+..+.+|....+.++-+|..+++++.+.|.++++||++.. ..+..|.+|...|+++.|.-|. .+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence 99999999999999999999999999999999999999999999843 4567899999999999999765 489999999
Q ss_pred eEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccCCCEEEEEEcCCC
Q 005096 335 IIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 335 ~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg 410 (715)
+|+|||+++.+. +.+++ .++.++.++++. +..+|+.--++..|++||++..... .....+|...|+|++|..+-
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999998765 44444 678899999997 7788888888899999999654322 22445788999999998763
Q ss_pred --CEEEEEECCCeEEEEecCCCC
Q 005096 411 --YLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 411 --~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-|++++-|..+.-|+++.+.
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 558899999999999998654
No 72
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.8e-27 Score=265.46 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=214.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceE---EEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF----------NFE---MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----------~~~---~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~ 211 (715)
.|+....+.|+..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|++ ++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444555556555666666665566654332 211 24778999999999999 789999999999999
Q ss_pred EEeCCCCc-------eeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC
Q 005096 212 YWQNNMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 212 iwd~~~~~-------~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~ 283 (715)
|||+.+.. .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99987642 456678899999999999975 6899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCc-eEEEEEcCCCCEEEEEE----CCCeEEEEECCCCeE-EEEeecCC-CC
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LESFRGHR-KD 356 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~-I~sl~~spdg~~Lasgs----~dg~I~iwDl~t~~~-~~~~~~h~-~~ 356 (715)
+|++++.|+.|+|||+++++.+..+..|... +..+.|.+++..|++++ .|+.|+|||+++... +..+..+. ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999888888654 45678898888777654 478999999987653 33333333 34
Q ss_pred eEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 357 VTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+....|++ ++++|++++ .|+.|++||+.++.........+...+..++|.+.-. +-...--..|+|.+.
T Consensus 262 ~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 262 LFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYALT 331 (493)
T ss_pred eEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEec
Confidence 55667787 677777776 5999999999887765554444556788888887532 222222345777764
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=271.32 Aligned_cols=264 Identities=25% Similarity=0.370 Sum_probs=235.5
Q ss_pred eeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 133 ~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+++...+.+|.+.|.++++...+++|++|+.|.+++|||+.++++..++.+|.+.|.++... ..++++|+.|.+|++
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 345556699999999999999888899999999999999999999999999999999999874 567888999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
|+++++..+..+.+|.+.|+++.+. +.++++|+.|++|+|||+.++++++++.+|...|.++.+... +.+++|+.|+
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999999999999999999999996 789999999999999999999999999999999999988755 8999999999
Q ss_pred cEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~~~~~l 370 (715)
+|++||+++. +++..+.+|..-+.++.+ .+++|++++.|++|++||..+++++..+.+ |...|.++++. ...+
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~i 467 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEI 467 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceE
Confidence 9999999999 999999999988876665 478999999999999999999999999998 67889988874 5788
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (715)
++++.||.+++||+++......++.........+++
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 999999999999999988766664433334444444
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=251.91 Aligned_cols=291 Identities=21% Similarity=0.346 Sum_probs=247.1
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE----E-------------E-eccCCCEEEEEEcCCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM----I-------------L-QAHDHAIRSMVWSHNDN 199 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~----~-------------l-~~h~~~V~~l~~spdg~ 199 (715)
..+..|.-+|.|+++++|++++++++.|++|.-|++.+++..+ . - +.|...|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4677899999999999999999999999999999987766331 1 1 26778899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++....+.++.+|.+.|.+|...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-------
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG------- 352 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~------- 352 (715)
.-++.+.+|+.|+++++|++.. +.-..+.++.+.+-|++|-. ...+++|+.||.|.+|++.+.+.+.+...
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE 373 (479)
T ss_pred cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence 8888888888999999999953 33445677888999999984 46799999999999999999888776541
Q ss_pred -----CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEE-EEEECCCeEEE
Q 005096 353 -----HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLL-CSGSNDHTTKF 424 (715)
Q Consensus 353 -----h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L-~sgs~Dg~I~i 424 (715)
+...|++|+..+ +.+++++|+.+|.|++|.+..+...+.++. .-.+.|++|+|+.+|+.| +..+....+--
T Consensus 374 ~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGR 452 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGR 452 (479)
T ss_pred ccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccce
Confidence 123799999999 999999999999999999988854433332 146789999999999854 44555666666
Q ss_pred EecCCCC
Q 005096 425 WCRNRPG 431 (715)
Q Consensus 425 Wdl~~~~ 431 (715)
|...+..
T Consensus 453 W~~~k~~ 459 (479)
T KOG0299|consen 453 WWCLKSG 459 (479)
T ss_pred eeEeecc
Confidence 7655433
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=3.4e-28 Score=261.59 Aligned_cols=283 Identities=22% Similarity=0.342 Sum_probs=242.6
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE--EEEeccCCCEEE-EEEcC-CCCEEEEEeCCCcEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MILQAHDHAIRS-MVWSH-NDNWMVSGDDGGAIK 211 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~--~~l~~h~~~V~~-l~~sp-dg~~L~tgs~dg~I~ 211 (715)
+...+.+|+..|..+++..+. .+++++.||+++||+-.....+ ..+.+|.+.|.+ ++|.+ ++..|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 345789999999999987655 7999999999999997655443 456678888777 88875 445699999999999
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
+|.+...+...++++|+..|.+++...++. +++||.|.++++|.+.. +...+.+|...|++++.-+++ .+++|+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999999887777 99999999999998754 555689999999999999887 79999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++++.||.|++||+ +++++.++.+|..-|++++... ++..|+
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv 235 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV 235 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence 99999975 77899999999999999998765 4888999999999999 7999999999999999999766 889999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++++|++++||+.. .+...+......||++.+-.+|. |++|+.||.||||..++...
T Consensus 236 s~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 99999999999987 33344433345899999988886 67788899999999875544
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=252.31 Aligned_cols=288 Identities=20% Similarity=0.362 Sum_probs=228.9
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
....+.+|+..|+++++.+.|.+|++|+.|.+|++||+.... ..+.+. .....|+++.|++.++.|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 345688999999999999999999999999999999976532 222222 334679999999999999888888899
Q ss_pred EEEeCCCCceeee------------ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEE-Eec-----ccCC
Q 005096 211 KYWQNNMNNVKAN------------KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEER-SLT-----GHGW 271 (715)
Q Consensus 211 ~iwd~~~~~~~~~------------~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~-~l~-----~~~~ 271 (715)
+|+|.+..+.... .++|...++|.+|+|+. ..|++++.||+++|||+++.+.-. .++ +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999765544332 25788999999999976 568999999999999997654322 222 2334
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~---~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
.+++++|++|+++|++|+.||.|.+||..+... ...-..|.. .|+||+||.||++|++-+.|+++++||++..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 688999999999999999999999999865321 223345665 899999999999999999999999999998654
Q ss_pred -EEEeecC--CCCeEEEEEccCCCCEEEEEeC------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 347 -LESFRGH--RKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 347 -~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
+....+. ...-+.++|+| +.++|++|+. .|.+.+||..+-..+.++.. ....|..+.|++.-+.|++++
T Consensus 399 pL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred chhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeec
Confidence 4444432 33567899999 8899998864 57899999887777666654 467889999999988888899
Q ss_pred CCCeEEEE
Q 005096 418 NDHTTKFW 425 (715)
Q Consensus 418 ~Dg~I~iW 425 (715)
.||+++||
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999986
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.5e-28 Score=243.59 Aligned_cols=244 Identities=25% Similarity=0.426 Sum_probs=211.0
Q ss_pred EecCCCCccEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCce----EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 138 TSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~---~Latgs~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.+|.+.|.+++|..... .|++++.|.++++|..+.++. ++...+|+..|.+|....++..+++|+.|..|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 35779999999998865443 599999999999998776543 44456999999999999999999999999999
Q ss_pred EEEeCCC-------------------------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 211 KYWQNNM-------------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 211 ~iwd~~~-------------------------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
.||+.++ ...+..+.+|...|.++.|+. ...+++++.|.+|+.||++++..+..
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~ 296 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST 296 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee
Confidence 9998321 112445678999999999997 77899999999999999999998888
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~---~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl 341 (715)
+. ....+.|+++++..++|++|+.|..|++||-+++. ....+.+|.++|.++.|+|. ...|++++.|+++++||+
T Consensus 297 ~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 297 LT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 87 45578999999999999999999999999998753 34567899999999999994 566889999999999999
Q ss_pred CCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 342 RAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 342 ~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
|+.+ .+..+.+|...|.++.|+ ++.+|++|+.|.+|+|+...
T Consensus 376 RS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEeccc
Confidence 9888 899999999999999998 57899999999999998653
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.6e-29 Score=238.53 Aligned_cols=246 Identities=22% Similarity=0.370 Sum_probs=224.1
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
-++.+|++.|.+..++.+..+.|+++.|-+-+|||.-++..+..+. |..-|.+++|+.|.++|++|+.+..++|||++.
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 4688999999999999999999999999999999999998888875 788999999999999999999999999999987
Q ss_pred Cc-eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 218 NN-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 218 ~~-~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.+ ....+.+|...|..+.|+..++.|+++++|++||+||.++++.+.++. ....|+++.++.||++|.++ ..+.|++
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~F 209 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKF 209 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEE
Confidence 53 456678999999999999999999999999999999999999999987 66789999999999977665 4578999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
||.++-..++.++ -...|.+.+++|+...+++|++|..++.||..+++.+..+ ++|-+.|.|+.|+| ++.+.++|+.
T Consensus 210 wdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSE 287 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSE 287 (334)
T ss_pred eccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCC
Confidence 9999988888877 4567999999999999999999999999999999999996 89999999999999 8999999999
Q ss_pred CCcEEEEEcCCCC
Q 005096 376 DGSIFHWLVGHET 388 (715)
Q Consensus 376 DG~I~iwd~~~~~ 388 (715)
||+|+||.....+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999875543
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=263.06 Aligned_cols=278 Identities=23% Similarity=0.403 Sum_probs=242.2
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCCCCc------eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--c
Q 005096 149 RVLWT-PTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--N 219 (715)
Q Consensus 149 ~l~~s-pdg~~Latgs~dg~I~Iwd~~~~~------~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~--~ 219 (715)
++..+ +.+++|++|+.||.|++|+..... ....++.|...|+.++...+++.|++++.|-+|++|+.... -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33444 356789999999999999976432 36678889999999999999999999999999999998877 5
Q ss_pred eeeeecCCCCCeEEEEE-ecCCCEEEEEECCCcEEEEECCCCee--EE--------Eec-ccCCceEEEEEcCCCCEEEE
Q 005096 220 VKANKSAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQE--ER--------SLT-GHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~-spd~~~Las~s~Dg~V~iwdl~~~~~--~~--------~l~-~~~~~I~si~~spdg~~L~s 287 (715)
+..++..|++.|.||++ ..+...+|+|+.|+.|++||++++.. +. .+. ++...|.+++.++.+..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 67788899999999999 77888999999999999999987632 22 222 67788999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~ 367 (715)
|+.++.|++||.++++.+..+.+|...|.++..+.||+.+++++.||+|++||+...+++.++..|+..|.++..++ +-
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..+++|+.||.|..-|+++......+.. .+.+|..+..+.+..-+-+++.|+.|+-|...
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999999999988655444443 45678888887666666888889999999764
No 80
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.4e-26 Score=259.45 Aligned_cols=248 Identities=16% Similarity=0.226 Sum_probs=198.2
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------eeeeecCCCCCeE
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESVR 232 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~--------~~~~~~~h~~~I~ 232 (715)
|+.++.|+||+..+...+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||+.++. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998888888899999999999999997 7899999999999999987642 2345678999999
Q ss_pred EEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC
Q 005096 233 DLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311 (715)
Q Consensus 233 ~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~ 311 (715)
+++|++++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5789999999999999988777775 5678999999999999999999999999999999999999888
Q ss_pred CCceEE-----EEEcCCCCEEEEEECCC----eEEEEECCC-CeEEEEeecCCC-CeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 312 KNMVLC-----VKWNQNGNWVLTASKDQ----IIKLYDIRA-MKELESFRGHRK-DVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 312 ~~~I~s-----l~~spdg~~Lasgs~dg----~I~iwDl~t-~~~~~~~~~h~~-~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
.+.+.+ ..|++++++|++++.|+ .|+|||+++ .+.+..+..+.. .+....|.++++.++++|+.|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 875433 33557889999888664 799999995 455554432221 2222344455788999999999999
Q ss_pred EEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 381 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
+|++..+.........+...+.+++|.|+.
T Consensus 289 ~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 289 YYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEccCCcEEeecccccCCCccceEEcccc
Confidence 999976632211122245678899999874
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=233.18 Aligned_cols=244 Identities=22% Similarity=0.358 Sum_probs=214.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~L~tgs~dg~I~iwd~~ 216 (715)
.+..|.+.|+++++ ++.++|+|+.|-+|+|||+.+.+.+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 56789999999999 588999999999999999999999999999999999999998764 89999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
..+++..++.|...|+.|+++|.+++.++.+.|+.++.||+-+++....+. .....+.|.|++.|.+++.+..+ .|-|
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEE
Confidence 999999999999999999999999999999999999999998887665554 23344569999999999988875 5999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEcc-CCCCEEEEEeC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP-FHEEYFVSGSL 375 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp-~~~~~l~sgs~ 375 (715)
|.+.+.+....+. ....+.|+.|. ++.+|++|..|+.|++||..+..++..+.+|...|-++.+-. ....+|++++.
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 9998877666555 34668888887 677899999999999999999999999999999999998533 25679999999
Q ss_pred CCcEEEEEcCCCC
Q 005096 376 DGSIFHWLVGHET 388 (715)
Q Consensus 376 DG~I~iwd~~~~~ 388 (715)
||.|+|||++...
T Consensus 272 DG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 272 DGFIKVWDIDMET 284 (362)
T ss_pred CceEEEEEccccc
Confidence 9999999998763
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=232.69 Aligned_cols=270 Identities=20% Similarity=0.271 Sum_probs=221.7
Q ss_pred CCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-c-eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 142 KNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-N-FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 142 ~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~-~-~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.-.+.|.+|+||| ...+|++++.||+||+|+++.. . .-+....|++.|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 5566779999999999998873 2 23455678999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~--~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.. ..+..|...|.++.|-+... .|++|+.|++|+.||++....+.++. ..+.+.+++.- ..+++++..+..|.+
T Consensus 105 Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred Ce-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 54 45578999999999988665 79999999999999999988888876 44566666654 568889999999999
Q ss_pred EECCCCceeEE-e-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCC---------CeEEEEEc
Q 005096 297 WDAKSGRELCS-F-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRK---------DVTALAWH 363 (715)
Q Consensus 297 wDl~s~~~~~~-~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--~~~~~~~~h~~---------~V~~l~~s 363 (715)
|+|+++..... . ...+-.++||+...|.+..+.|+.+|.+.|..+... +.-.+|++|.. .|++|+|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99986543322 1 223456899999998888899999999999999876 55566777763 47889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
| .-..|+|++.||++.+||-+...++.... .|...|++++|+.+|.+++.+.
T Consensus 261 P-~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 261 P-VHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred c-ccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEEe
Confidence 9 77889999999999999987766654443 5888999999999999887664
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-28 Score=233.57 Aligned_cols=242 Identities=23% Similarity=0.411 Sum_probs=213.0
Q ss_pred CCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc
Q 005096 143 NRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 143 H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~ 219 (715)
-.+.+..++|+++ .+.+++++.||+++|||+.. .+.+..++.|+..|.++.|+.. +..+++++.|++|++|+.+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4567899999986 46788999999999999543 4578889999999999999975 4566888999999999999999
Q ss_pred eeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005096 220 VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iw 297 (715)
.+.++.+|...|...+|+| ..+.+++++.|+++++||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999998 568899999999999999977666666888999999999997 45689999999999999
Q ss_pred ECCCC-ceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 298 DAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 298 Dl~s~-~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
|+++- ..+.++.+|.-.|+.|+|||. ..+|++++.|-+++|||... ...+.+...|..-|..+.|+.....++|+++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99974 467888999999999999994 57899999999999999984 4456777789999999999999999999999
Q ss_pred CCCcEEEEEc
Q 005096 375 LDGSIFHWLV 384 (715)
Q Consensus 375 ~DG~I~iwd~ 384 (715)
.|+.++||+-
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999983
No 84
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.4e-26 Score=258.38 Aligned_cols=242 Identities=18% Similarity=0.310 Sum_probs=191.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------cee---eeecCCCCCeEEEEEec-CCCEEEEEECCCcEEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVK---ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKV 254 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----------~~~---~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~i 254 (715)
|+....+.|+..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|++ ++++|++++.|++|+|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333444445444555555555555553322 211 23568999999999999 8889999999999999
Q ss_pred EECCCC-------eeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE
Q 005096 255 WDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 255 wdl~~~-------~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
||+.+. +.+..+.+|...|.+|+|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|++++++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 999764 2466788999999999999985 69999999999999999999999999999999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeecCCCC-eEEEEEccCCCCEEEEEe----CCCcEEEEEcCCCCceEEEeec-cCCC
Q 005096 327 VLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVSGS----LDGSIFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-V~~l~~sp~~~~~l~sgs----~DG~I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
|++++.|+.|+|||+++++.+..+..|... +..+.|.+ ++..|++++ .|+.|++||+++.......... ....
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 999999999999999999999999888765 45678888 445555443 4789999999876655544432 3345
Q ss_pred EEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 401 VWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
+....|++++.+|++++ .|+.|++||+....
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 66778999999999887 59999999997543
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=240.96 Aligned_cols=249 Identities=19% Similarity=0.294 Sum_probs=219.2
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee--------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~--------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
....+.|..|+||+++|++|+.||.|.|||..++++...+ .-+.+.|.|++|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4566889999999999999999999999999988765544 34678999999999999999999999999999
Q ss_pred CCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 257 FARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 257 l~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
++++.+++.|. .|...|+|+.|+.|+..+++++.|.+++|.-+++|++++.+++|.+.|+...|..||.+|++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCC
Q 005096 336 IKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGY 411 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~ 411 (715)
|+||+.++.+++.+|+. .+..|+++...|.+...+++|...++|+|.++... .+..+..+ ..+...+++.++.|.
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeeccCCccCCceEEEEecCCCc
Confidence 99999999999999884 55678999999988899999999999999887432 22222222 234566778899999
Q ss_pred EEEEEECCCeEEEEecCCCCCcc
Q 005096 412 LLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
++++.++|+.++.|.+...+.+.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred EEEEEccCcEEEEEEeecCceee
Confidence 99999999999999986655443
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.7e-27 Score=231.64 Aligned_cols=294 Identities=16% Similarity=0.269 Sum_probs=230.2
Q ss_pred CceeeeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE--EEE--eccCCCEEEEEEcCCCCEEE-E
Q 005096 129 TSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MIL--QAHDHAIRSMVWSHNDNWMV-S 203 (715)
Q Consensus 129 ~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~--~~l--~~h~~~V~~l~~spdg~~L~-t 203 (715)
..|...+....|++|.+.|++++|+.||++|++++.|++|+||++++.... +.+ ...-+.-+.++|++|.+-++ .
T Consensus 71 ~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 71 PTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred CCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 345556666789999999999999999999999999999999998874321 111 11123567899999987654 4
Q ss_pred EeCCCcEEEEeCCCCc---ee---------eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC
Q 005096 204 GDDGGAIKYWQNNMNN---VK---------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~---~~---------~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~ 271 (715)
+-...++++|.+...+ .. ..-+.|.-.|..+-+..++.+|++++.|.+|.+||+. ++.+..+.....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS 229 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence 5566789999754321 11 1113455667778888888999999999999999998 788888887777
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECC---CC-----ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAK---SG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~---s~-----~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.-...+++|+|++|++++..-.|++|.+- .| +.+..+++|...|..++|+++.+.+++.+.||+++|||++-
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 78889999999999999999999999863 22 34567889999999999999999999999999999999853
Q ss_pred C-------eEEEEe----ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 344 M-------KELESF----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 344 ~-------~~~~~~----~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
. +.+++. ....+.-..+..+| ++..|+... ...|.+|..++++..-.+...|...|.+|+|+++|++
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence 2 122222 12334455899999 777777654 4479999998888877888889999999999999999
Q ss_pred EEEEECCCeEEEEe
Q 005096 413 LCSGSNDHTTKFWC 426 (715)
Q Consensus 413 L~sgs~Dg~I~iWd 426 (715)
+++++ |..++++.
T Consensus 388 ~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 388 IATCG-DRYVRVIR 400 (420)
T ss_pred Eeeec-ceeeeeec
Confidence 99988 67888875
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.8e-27 Score=230.19 Aligned_cols=268 Identities=20% Similarity=0.297 Sum_probs=224.4
Q ss_pred EEEEEeCCCeEEEEeCCCC------------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 158 RLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~------------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|++|++...|.-+++.-. ..+..+..|.+.|++++.+ +.++++|+.|-+|+|||+........+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 4677887777766654321 1245567899999999985 8999999999999999999999888999
Q ss_pred CCCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 226 AHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~--~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.|.+.|+++.|.++-. .|++|++||.|.+|+.....++..++.|...|+.|+++|.+++-++.+.|+.+++||+-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998765 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.-..+. -....+.|.|++.|.+++++..+ .|-||.+.+.+....+.. ...+.++.|. ++..|++|.+|+.|.+||
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKD 235 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEec
Confidence 766554 23334559999999999888755 689999987776655553 3567777776 788999999999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEE--cCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~--spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.+..... ..+.+|...|.++.+ .+++.+|+|++.||.|+|||++...+.
T Consensus 236 ~ds~~~~-~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 236 TDSDTPL-TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCCccc-eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9885444 555579999999985 345789999999999999999766443
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=248.48 Aligned_cols=243 Identities=27% Similarity=0.413 Sum_probs=215.2
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~ 216 (715)
+.+...++.|.+++|-.||++|++|+..|.|+|||.++...++.+.+|...|..+.|++.+ ..|++|++|+.+++||+.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 3455678899999999999999999999999999988877889999999999999999976 466788999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+..+...+.+|++.|.|.+|++-. ..+++|+.||+|++||++.. ..+.++. |+..|.++.+-+.|.+|++++. ..|
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 998877899999999999999854 57899999999999999877 5555555 8999999999999999998875 679
Q ss_pred EEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 295 KLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 295 ~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
++||+.+| +.+..+..|...|+|+++..++..|++++-|+.|++||+.+.+.+..++ ..+.|.++++++ ++..++.|
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEe
Confidence 99999965 4455555699999999999999999999999999999999999988887 778999999999 88899999
Q ss_pred eCCCcEEEEEc
Q 005096 374 SLDGSIFHWLV 384 (715)
Q Consensus 374 s~DG~I~iwd~ 384 (715)
..||.+.+-+.
T Consensus 298 msnGlv~~rr~ 308 (487)
T KOG0310|consen 298 MSNGLVSIRRR 308 (487)
T ss_pred cccceeeeehh
Confidence 99999887744
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=254.86 Aligned_cols=331 Identities=19% Similarity=0.238 Sum_probs=252.1
Q ss_pred cceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCE
Q 005096 79 RRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRR 158 (715)
Q Consensus 79 ~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~ 158 (715)
+...+.++.+.++..|.+||+..-++.-......++...++.++... .+-|+..--|+ |.+ .
T Consensus 333 det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--------------~nv~~~~~acl---p~~-c 394 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--------------CNVHSPTAACL---PRG-C 394 (1080)
T ss_pred cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--------------ccccCcccccC---Ccc-c
Confidence 34456677788899999999865543332222222222222211110 01111111111 222 4
Q ss_pred EEEEeCCCeEEEEeCCCCc---e----------EEE------------------------EeccCCCEEEEEEcCCCCEE
Q 005096 159 LITGSQSGEFTLWNGQSFN---F----------EMI------------------------LQAHDHAIRSMVWSHNDNWM 201 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~---~----------~~~------------------------l~~h~~~V~~l~~spdg~~L 201 (715)
++|+++|++|+|||++... . .++ .......|.+++.++++++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 8999999999999977521 1 000 01123468999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECC-CCeeEEEecccCCceEEEE
Q 005096 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~ 277 (715)
++|+..|.|+||++...+....+..|+..|.|+.|+. ..++||+++.|..|.|||+. +...+.++.+|...|++|.
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEE
Confidence 9999999999999999998889999999999999986 34779999999999999995 4556788899999999999
Q ss_pred EcCCC--CEEEEEeCCCcEEEEECCCCceeEEec-----cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 278 WHPTK--SLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 278 ~spdg--~~L~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
|--.| ..+++++.|..|.+--.........+. ..+..+..++..++.+++++++.|+.|+|||+.+++.++.|
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF 634 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence 98777 678899999877554332211122221 12456889999999999999999999999999999999999
Q ss_pred ec---CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 351 RG---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 351 ~~---h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++ |++....+...| .+.||++.+.|.+|.|+|+.+++...... +|...|+.+.|.+|-+.|++++.||.|.||.+
T Consensus 635 Kgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred cccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEEC
Confidence 85 567788899999 89999999999999999999888776665 69999999999999999999999999999998
Q ss_pred CC
Q 005096 428 NR 429 (715)
Q Consensus 428 ~~ 429 (715)
..
T Consensus 713 p~ 714 (1080)
T KOG1408|consen 713 PL 714 (1080)
T ss_pred ch
Confidence 65
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-27 Score=254.05 Aligned_cols=240 Identities=24% Similarity=0.463 Sum_probs=219.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
.+.|+++.|+++|++|++|..+|.|.|||.++.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 88999999999999999999999999999999999999998 99999999997 7789999999999999998875444
Q ss_pred e-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-CCEEEEEe--CCCcEEEEE
Q 005096 223 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGG--KDSLVKLWD 298 (715)
Q Consensus 223 ~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd-g~~L~sgs--~Dg~I~iwD 298 (715)
. +..|...|..++|++|+++||+|+.|+.|.|||......+..+..|...|.+++|+|- ..+||+|+ .|++|++||
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 4 8889999999999999999999999999999999888889999999999999999995 45788764 699999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEE--EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Las--gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
..+++.+..+. ....|++|.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++++| ++..|++|+.|
T Consensus 375 ~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~D 452 (484)
T KOG0305|consen 375 TNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAAD 452 (484)
T ss_pred cCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEeccc
Confidence 99999988876 5678999999998876765 44677999999999999999999999999999999 89999999999
Q ss_pred CcEEEEEcCCC
Q 005096 377 GSIFHWLVGHE 387 (715)
Q Consensus 377 G~I~iwd~~~~ 387 (715)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998654
No 91
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.1e-26 Score=249.96 Aligned_cols=372 Identities=19% Similarity=0.321 Sum_probs=277.7
Q ss_pred CCCCCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeE
Q 005096 56 PSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKF 135 (715)
Q Consensus 56 p~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 135 (715)
..-..+.||+|+|....|.+... ..-++++...|..||+|++...+... ..........+...............-.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~--~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGG--DDLLLASSSQDRYIRIWRIVLGDDED-SNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCC--CcEEEEecCCceEEEEEEEEecCCcc-ccccccccccccCCceeeeeeeEEEEEe
Confidence 33456789999999988877544 34577888899999999986554333 1111111111111000000000001111
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEE-----EeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMI-----LQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~-----l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
++..+.||.+.|+++.|++++..|++++.|.++.||.-++. --+.. ..+.........|+++++.+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 23456699999999999999999999999999999975543 22222 223345688999999999999999999
Q ss_pred cEEEEeCCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC----CCeeEEEecccCCceEEEEEcCC
Q 005096 209 AIKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA----RCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 209 ~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~----~~~~~~~l~~~~~~I~si~~spd 281 (715)
..++|..... .....+.+|.+.|++++|.+.|++|++++.|-+-|+|--- +..++..-..|+..++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983332 2344567899999999999999999999999999998643 12333444568889999999986
Q ss_pred CCEEEEEeCCCcEEEEECCC-------------------------------------------Cce--------------
Q 005096 282 KSLLVSGGKDSLVKLWDAKS-------------------------------------------GRE-------------- 304 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s-------------------------------------------~~~-------------- 304 (715)
...|++|.++..+|+|+.-. |..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 67788888888899987310 000
Q ss_pred -------------------eEEeccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 305 -------------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 305 -------------------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+.++-+|...|.+++.++++++||+++... .|+||+..++..+..+..|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 111226778899999999999999998554 69999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+|++ ++++|++.+.|.++.+|........ ....+.|..-|++++|+|++.+|+|+|.|.+|+||......
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 9999 9999999999999999988543322 23366799999999999999999999999999999987653
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.8e-26 Score=225.21 Aligned_cols=267 Identities=21% Similarity=0.309 Sum_probs=224.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.+.|++|.|++.+..|++++.||++++||+....+...+ .|...+.+++|.. ...+++|+.||.|+++|++++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 678999999999999999999999999999887555444 4889999999985 6788999999999999999887654
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
+..|...|.||.++.....+++|++|++|++||.+....+..+. ....|.++... ++.|++|+.|..|.+||+++..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 45799999999999988999999999999999998755555554 34488888887 7899999999999999999866
Q ss_pred eeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCC---------CeEEEEEccCCCC
Q 005096 304 ELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRGHRK---------DVTALAWHPFHEE 368 (715)
Q Consensus 304 ~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----~~~~~~~~h~~---------~V~~l~~sp~~~~ 368 (715)
..... ...+-.++||++.|++.-+++++.||+|.+=.++.. +....|++|.. .|++|+|+| -..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccc
Confidence 54422 234567899999998888999999999988777665 44556666653 489999999 578
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.|+||+.||.|.+||..+.+.+..+... +..|..++|+.||..||+++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 8999999999999999988877666653 667999999999999999875
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=255.38 Aligned_cols=320 Identities=19% Similarity=0.274 Sum_probs=260.5
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latg 162 (715)
+|+-+..|++.||+|+........-.+ ...+++.|.+.|+.++...+++.|+++
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhhcCCCceEEe
Confidence 478889999999999865332111000 122577899999999999999999999
Q ss_pred eCCCeEEEEeCCCC--ceEEEEeccCCCEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCc--eee--------ee-cCCC
Q 005096 163 SQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVW-SHNDNWMVSGDDGGAIKYWQNNMNN--VKA--------NK-SAHK 228 (715)
Q Consensus 163 s~dg~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~-spdg~~L~tgs~dg~I~iwd~~~~~--~~~--------~~-~~h~ 228 (715)
+.|-+|++|+.... -+..++..|...|.|+++ ..+..++|+|+-|+.|.|||++++. ++. .+ .+++
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 99999999998877 577888999999999999 7788889999999999999999762 211 12 2788
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~ 308 (715)
..|.+++..+.+..|++|+.++.|++||.++++.+..+.+|...|+++..+.||..+++++.||+|++||+...+|+.++
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..|+..|+++..+++-.++++|+.||.|..-|+++......+...+..|..+..+. .++-+.+++.|+.|+-|...-..
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~-~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE-HDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc-ccCCceeeeccccceecCCcccc
Confidence 99999999999999999999999999999999998654444444667777777775 34444677788999999653211
Q ss_pred ce-----------------EEE------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 389 PQ-----------------VEI------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 389 ~~-----------------~~~------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+ ... .......|...+...|.++++|-..+|.+.+||+-.
T Consensus 331 ~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 331 ALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred ccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 00 000 000111344455666889999999999999999854
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.1e-26 Score=259.97 Aligned_cols=248 Identities=22% Similarity=0.355 Sum_probs=219.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC------------------CCceEEEEeccCCCEEEEEEcCCCCE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ------------------SFNFEMILQAHDHAIRSMVWSHNDNW 200 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~------------------~~~~~~~l~~h~~~V~~l~~spdg~~ 200 (715)
....|.+.|+|+.|++||++||+|++|+.|.||+.. .++.+.++.+|+..|.+++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 567899999999999999999999999999999865 23467889999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC------CceE
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG------WDVK 274 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~------~~I~ 274 (715)
|++++.|++|.|||..+.+.+..+.+|...|..+.|.|-|++||+-++|++|+||++.+....+.+.++- .-+.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999999999999999999999999999999999998877777776543 3477
Q ss_pred EEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEeccCCCceEEEEEcCC-----CC------------EEEEEECC
Q 005096 275 SVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GN------------WVLTASKD 333 (715)
Q Consensus 275 si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-----g~------------~Lasgs~d 333 (715)
.+.|+|||.+|++... -.++.|.+-.+.+.-..+-+|.+.+.+++|+|. .+ .+|+|+.|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 8999999999998643 346889998888888899999999999999871 11 67889999
Q ss_pred CeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 334 QIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
++|.||.....+.+..+. .....|.+++|++ ++..|++++.||+|.++.++.+
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence 999999998777765543 4678899999999 8999999999999999998654
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=220.01 Aligned_cols=249 Identities=20% Similarity=0.364 Sum_probs=217.8
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--eecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEE
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwd 256 (715)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+... ...+|.+.|..++|++ ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567888999999999999999999999999999998775433 3467888999999987 457899999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
++.+++...+....+.| -+.|+|+|+++++++.|..|.+.|.++.+.+...+ ....+..++|+.++++++..+..|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999998887655554 68899999999999999999999999887776655 56678899999888888888888999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEE
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 416 (715)
.|......+.+.+++.|.....||.|+| ++++||+|+.|-.+.+||++.--++. .+..++-+|..|+|+.||++||++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R-~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICER-CISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhhe-eeccccCceEEEEeccCcceeecc
Confidence 9999999999999999999999999999 89999999999999999997665554 444588899999999999999999
Q ss_pred ECCCeEEEEecCCCCC
Q 005096 417 SNDHTTKFWCRNRPGD 432 (715)
Q Consensus 417 s~Dg~I~iWdl~~~~~ 432 (715)
++|..|-|=++.+..+
T Consensus 250 SEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDR 265 (313)
T ss_pred CccceEEeEecccCCe
Confidence 9999998887765444
No 96
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.8e-25 Score=247.24 Aligned_cols=224 Identities=20% Similarity=0.347 Sum_probs=182.1
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCe--------eEEEecccCCceE
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ--------EERSLTGHGWDVK 274 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~--------~~~~l~~~~~~I~ 274 (715)
|+.++.|++|+......+..+.+|...|.+++|+++ +.+|++|+.|++|+|||+.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998877778888999999999999996 7899999999999999997532 2346778999999
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 275 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 275 si~~spdg~~-L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
+++|+|++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999875 5788999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEEE-----EccCCCCEEEEEeCCC----cEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeE
Q 005096 354 RKDVTALA-----WHPFHEEYFVSGSLDG----SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTT 422 (715)
Q Consensus 354 ~~~V~~l~-----~sp~~~~~l~sgs~DG----~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I 422 (715)
.+.+.+.. |++ ++.+|++++.|+ .|+|||++.....+..... +.+.+.......++.++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 87654433 345 667788777664 7999999865444333322 22333333344558899999999999
Q ss_pred EEEecCC
Q 005096 423 KFWCRNR 429 (715)
Q Consensus 423 ~iWdl~~ 429 (715)
++|++..
T Consensus 288 r~~e~~~ 294 (568)
T PTZ00420 288 RYYQHSL 294 (568)
T ss_pred EEEEccC
Confidence 9999964
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.9e-27 Score=238.36 Aligned_cols=240 Identities=19% Similarity=0.321 Sum_probs=212.4
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+|.+-.+.|++++|..+++++++++.|+.+++|++.......++.+|.+.|+++.|......+++|+.|.+|++||+..
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence 36778888999999999999999999999999999999999999999999999999988777799999999999999998
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
..+..++. ....+.+|+.+ ...++++-.|++|++||+++.........+. .|+++..+.++..|++++.|.++.++
T Consensus 293 ~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 293 AYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred hheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence 77666543 34456666664 5678889999999999999999998888665 99999999999999999999999999
Q ss_pred ECCCCceeEEeccC----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC--eEEEEEccCCCCEEE
Q 005096 298 DAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEYFV 371 (715)
Q Consensus 298 Dl~s~~~~~~~~~~----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~--V~~l~~sp~~~~~l~ 371 (715)
|+++.+....+... ....+.+.|||++.|+++|+.||.|+||++.++++...+...... |++++|++ .+..++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Ll 447 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLL 447 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhh
Confidence 99998877776532 234788999999999999999999999999999999888866655 99999999 889999
Q ss_pred EEeCCCcEEEE
Q 005096 372 SGSLDGSIFHW 382 (715)
Q Consensus 372 sgs~DG~I~iw 382 (715)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 98
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.7e-26 Score=242.95 Aligned_cols=315 Identities=20% Similarity=0.304 Sum_probs=247.9
Q ss_pred CccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE
Q 005096 103 DRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL 182 (715)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l 182 (715)
.+..+..++...+..||....... | ...+...+.+|++.|.||+..+.|.+|++|+.||+|+||.+.++.+++.+
T Consensus 364 rK~rlniDpe~LiPkLPsp~dLrP----F-Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~ 438 (733)
T KOG0650|consen 364 RKMRLNIDPESLIPKLPSPKDLRP----F-PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV 438 (733)
T ss_pred ccceecCCHHHhcccCCChhhcCC----C-cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE
Confidence 344455556666666664332221 1 12244567899999999999999999999999999999999999999988
Q ss_pred eccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCC-------------------------------------ceeee
Q 005096 183 QAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMN-------------------------------------NVKAN 223 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~--~L~tgs~dg~I~iwd~~~~-------------------------------------~~~~~ 223 (715)
.. ++.|.||+|++.++ .||++.. ..+.|.+..-+ .-++.
T Consensus 439 ~~-d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~ 516 (733)
T KOG0650|consen 439 QF-DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI 516 (733)
T ss_pred ee-cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence 74 66999999999764 3343332 23443331110 01223
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~D---g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
...|...|+.+.|+..|.||++...+ ..|.|.++.......-|....+.|.++.|+|...+|++++. ..|+|||+.
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~ 595 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS 595 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh
Confidence 34577889999999999999988664 56999999877777777777889999999999999998876 679999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
..+.+.++.....+|.++++++.|..|++++.|+.+..||+.-. +..++++.|...|++|+|++ .-.+|++|+.||++
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTV 674 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcE
Confidence 88888888878889999999999999999999999999999754 56788899999999999998 88899999999999
Q ss_pred EEEEcC------CC--CceEEEeeccCCC----EEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 380 FHWLVG------HE--TPQVEIHNVHDNT----VWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 380 ~iwd~~------~~--~~~~~~~~~h~~~----V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.||.-. .+ -..++.+.+|... |.++.|+|..-+|++++.||+|++|.
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 998432 11 1234455666654 89999999999999999999999993
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.1e-26 Score=236.08 Aligned_cols=246 Identities=25% Similarity=0.466 Sum_probs=207.2
Q ss_pred eccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce----------eeeecCCCCCeEEEEEecCC-CEEEEEECCC
Q 005096 183 QAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV----------KANKSAHKESVRDLSFCRTD-LKFCSCSDDT 250 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~~~----------~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg 250 (715)
..|.+.|+.+.+-|.. ++|++.+..+.|.|||..+... ...+.+|...-.+|+|+... -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4689999999998865 5667788899999999765321 12567888878889998854 5689999999
Q ss_pred cEEEEECCCCe-------eEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECC--CCceeEEeccCCCceEEEEE
Q 005096 251 TVKVWDFARCQ-------EERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKW 320 (715)
Q Consensus 251 ~V~iwdl~~~~-------~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~ 320 (715)
+|++||+.... ....+.+|...|..++|++.. .+|+++++|+.+.|||+| +.+......+|.+.|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999995432 245678899999999999854 588899999999999999 55666777889999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc---------
Q 005096 321 NQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------- 389 (715)
Q Consensus 321 sp-dg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--------- 389 (715)
+| ++.+||+|+.|++|.|||+|+.+ .+.++.+|+..|..|.|+|....+|++++.|+++.|||+..-..
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 66788899999999999999864 57899999999999999999999999999999999999965332
Q ss_pred ----eEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEEecC
Q 005096 390 ----QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 390 ----~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iWdl~ 428 (715)
++-+..+|...|..+.|+|+. ..|+++++|+.+.||+..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234566799999999999985 678889999999999886
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=246.61 Aligned_cols=277 Identities=19% Similarity=0.346 Sum_probs=236.2
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..|....+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++. ++++|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468899999999999999999999999999997765 444555547777888776 45699999999999999999887
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.-..+......+++++|+.+|+++|.|++|-.|++.++.+...+..+.+|...|.+|.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecc--------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCE
Q 005096 300 KSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 300 ~s~~~~~~~~~--------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~ 369 (715)
.++.+...+.+ ....+..++|+|++..|++.+.|+.|++|+..+++....++. +...+.++.|+| ++.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcE
Confidence 99887666542 134567789999988888888999999999999998887763 444599999999 8999
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
||+++.||.|.|||+++-.. ......|++++|.++...|-.....|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999987221 2235689999999998766665555655555
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-24 Score=215.29 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=216.7
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC--CCcEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVK 253 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~ 253 (715)
.+..+.+......|+++.|+.+|.+|++++.|.+|+|||..+++...++..++-.|..++|....+.++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3455566667789999999999999999999999999999999999999989899999999888888777776 88999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
..++.+.+.++-|.+|...|++|+.+|-++.+++++.|++|++||++..++...+.... -..++|+|+|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999999888877765333 3457899999999999988
Q ss_pred CeEEEEECCCCe--EEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC---CEEEEE
Q 005096 334 QIIKLYDIRAMK--ELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN---TVWDLA 405 (715)
Q Consensus 334 g~I~iwDl~t~~--~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~---~V~~l~ 405 (715)
..|+|||+|... ...++. ......+.|.|++ ++++|+.++..+.+++.|.-++.....+. .+.. .-...+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSAT 239 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEE
Confidence 899999999752 334443 3467899999999 88888888999999999987776443333 2222 225778
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCCCCcccc
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
|+||+++|++|+.||+|.+|+++......+.
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 9999999999999999999999665554433
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.9e-24 Score=224.99 Aligned_cols=268 Identities=10% Similarity=0.114 Sum_probs=207.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
+.+++++.|+.|++||+.+++.+..+..+. .+.+++|+++++.+ ++++.++.|++||..+++....+..+. .+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 568899999999999999999888887654 46789999999876 566788999999999888776655433 357789
Q ss_pred EecCCCEEEEE-ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEeccCCC
Q 005096 236 FCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 236 ~spd~~~Las~-s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg-~I~iwDl~s~~~~~~~~~~~~ 313 (715)
|+++++.++++ +.|+.|++||+.+.+.+..+.. ...+.+++|++++++++++..++ .+.+||.++++.+..+. ...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 99999877655 5689999999998877776653 34578899999999999888765 46778998877665543 234
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEccCCCCE-EEEEeCCCcEEEEEc
Q 005096 314 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHEEY-FVSGSLDGSIFHWLV 384 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~-------~~V~~l~~sp~~~~~-l~sgs~DG~I~iwd~ 384 (715)
.+.+++|++++++|++++ .++.|++||+++++.+..+..+. .....++|++ ++++ +++.+.++.|.+||+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 567899999999886554 68999999999998877665321 1235688999 5555 455566778999999
Q ss_pred CCCCceEEEeeccCCCEEEEEEcCCCCEEEEE-ECCCeEEEEecCCCC
Q 005096 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG-SNDHTTKFWCRNRPG 431 (715)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg-s~Dg~I~iWdl~~~~ 431 (715)
++.+....+. +...+++++|++++++|+++ +.++.|++||++...
T Consensus 237 ~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 237 KTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 8765443332 34579999999999998876 468999999997643
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=228.44 Aligned_cols=240 Identities=18% Similarity=0.292 Sum_probs=218.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
..+.++...+..+.+++|+.|..+.++|...+..+..+.+|...|+.+.++++...+++++.|..|+||......+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45778888777788999999999999999999999999999999999999999999999999999999999887788888
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
..|...|+.+..++.|+||++++.|+++.+.|+++++.+..... ..-.+++++|+|||.+|.+|..|+.|+|||+++.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998877653 3345899999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
..+..|.+|.+.|..|+|+. ++.+|+++++|+.|++||++..+....+.......|.+++|...|.+|+.++.|=.|++
T Consensus 380 ~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 99999999999999999998 99999999999999999999887766666555567999999999999999987766666
Q ss_pred Eec
Q 005096 425 WCR 427 (715)
Q Consensus 425 Wdl 427 (715)
++-
T Consensus 459 ~~k 461 (506)
T KOG0289|consen 459 CKK 461 (506)
T ss_pred Eec
Confidence 653
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4e-24 Score=202.27 Aligned_cols=250 Identities=24% Similarity=0.401 Sum_probs=210.4
Q ss_pred eEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cc---eEEEEeccCCCEEEEEEcCC----CCEEEEE
Q 005096 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FN---FEMILQAHDHAIRSMVWSHN----DNWMVSG 204 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~--~~---~~~~l~~h~~~V~~l~~spd----g~~L~tg 204 (715)
..+.+..+.|++.|.|.+|+++|.+|++|+.|.+|++.-.+. .+ ...++..|++.|..++|..+ +.+|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 445667788999999999999999999999999999875433 22 24567889999999999654 3566665
Q ss_pred e-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-------cCCceEEE
Q 005096 205 D-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSV 276 (715)
Q Consensus 205 s-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-------~~~~I~si 276 (715)
+ .|..|++-|...+.-...+.+|.+.|.++ ++.++-.|++|+.|.+|++||++-..++.++.. ....|.++
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 4 45667777888888888899999999876 455788999999999999999988777776642 23579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEeec
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRG 352 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----~~~~~~~~ 352 (715)
++.|.|++|++|-.|....+||++.++.+..+..|...|.|+.|+|...|+++++.|..|++-|+... -.+.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998631 12344557
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
|+..+..+.|++ .+-.+++.+.|.++.+|.++
T Consensus 318 hkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 899999999999 67778888999999999764
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.7e-26 Score=243.75 Aligned_cols=300 Identities=19% Similarity=0.340 Sum_probs=237.1
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCC-------ceeeeEEEEecCCCCccEEEEEEcCCC
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPST-------SFAAKFVHTSLNKNRCSINRVLWTPTG 156 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~l~~H~~~I~~l~~spdg 156 (715)
.+.++..+.+||+|+++...............+++. +.|.+.... ....|. ..++-+-+..|.+|++||+|
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k-i~y~d~~~q~~~d~~~~~fdka-~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK-IPYEDSTQQIMHDASAGIFDKA-LVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhc-CccccCchhhhhhccCCccccc-chhhcCcccceEEEEECCCc
Confidence 467778899999999987443333211111111111 111111110 111111 12344567789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCC-ceeeeecCCCCCeE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVR 232 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~ 232 (715)
++||+|..-|+|+|||+.+.+....+..|+..|.|+.|+.. .++|++++.|..|.|||+..+ .++.++.+|...|+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999999999999999999999999999863 478999999999999998764 56788899999999
Q ss_pred EEEEecCC--CEEEEEECCCcEEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 233 DLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 233 ~l~~spd~--~~Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
++.|..++ ..+++++.|+.|.+--.........+. .....+.++++.|..+++++++.|..|+|||+.+++.+
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 99998877 678999999876643322211122222 12456889999999999999999999999999999999
Q ss_pred EEecc---CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 306 CSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 306 ~~~~~---~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
+.|++ |.+....+...|.|.||++.+.|++|.++|+.+++++....+|...|+.+.|.+ +-+.|++.+.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEEE
Confidence 99974 556788899999999999999999999999999999999999999999999999 78889999999999999
Q ss_pred EcCC
Q 005096 383 LVGH 386 (715)
Q Consensus 383 d~~~ 386 (715)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 8854
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=238.40 Aligned_cols=341 Identities=18% Similarity=0.260 Sum_probs=265.5
Q ss_pred eeehhhheeeEEEEEeccCC-CccccccC-----chhhhc------Cccceee-cCCCC---CceeeeEEEEecCCCCcc
Q 005096 83 DYTSTVVRYMQIRMWQRDSR-DRTVLQAT-----PAAAID------MLPTVAY-TDNPS---TSFAAKFVHTSLNKNRCS 146 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~-~~~~~~~~-----~~~~~~------~l~~~~~-~~~~~---~~~~~~~~~~~l~~H~~~ 146 (715)
+++.++.....+.+|+.... +...++.. ...... ++..+.. +..+. .++..+-+..++.++...
T Consensus 125 e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~ 204 (910)
T KOG1539|consen 125 EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSR 204 (910)
T ss_pred ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccc
Confidence 45666677788899998773 22122211 111111 1111111 11111 122333455678889999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
|+++.=+|-=+.+|.|..+|+|.|+|++..+.+.+++...+.|++++|..||+.+ ++|+..|.+.+||++..++...+.
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 9999999999999999999999999999999999999767999999999999755 677777999999984332221111
Q ss_pred -CC-----------------------------------------------------------------------------
Q 005096 226 -AH----------------------------------------------------------------------------- 227 (715)
Q Consensus 226 -~h----------------------------------------------------------------------------- 227 (715)
.|
T Consensus 285 nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~ 364 (910)
T KOG1539|consen 285 NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSV 364 (910)
T ss_pred ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhh
Confidence 11
Q ss_pred --------------------------------------------------------------------------------
Q 005096 228 -------------------------------------------------------------------------------- 227 (715)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (715)
T Consensus 365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~ 444 (910)
T KOG1539|consen 365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF 444 (910)
T ss_pred hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc
Confidence
Q ss_pred ---CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 228 ---KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 228 ---~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
...+++++.+..|++.+.|+..|.|-+|++.++.....+ ..|...|+.++.+.-++.+++++.+|.+++||.++
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC
Confidence 123455566666666667777777777777776666666 37889999999998899999999999999999998
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
...+..++ -...+.++.++.....++++..|-.|+++|..+.+.++.|.+|...|++++||+ ++++|++++.|++|++
T Consensus 525 k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 525 KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRT 602 (910)
T ss_pred cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEE
Confidence 87776666 566789999999889999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC-CeEEEEec
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCR 427 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl 427 (715)
||+-+...+-.+.. +..++++.|+|+|.+|||+..| .-|++|.-
T Consensus 603 wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 603 WDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 99999887766654 6789999999999999999998 67999964
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.4e-25 Score=232.19 Aligned_cols=252 Identities=23% Similarity=0.437 Sum_probs=210.9
Q ss_pred eEEEEecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc----------eEEEEeccCCCEEEEEEcCCC-CEE
Q 005096 134 KFVHTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN----------FEMILQAHDHAIRSMVWSHND-NWM 201 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~----------~~~~l~~h~~~V~~l~~spdg-~~L 201 (715)
++.....--|.+.|+.+.+-|... .||+.+..+.|+|||..+.. ...++.+|...-+.|+|+... -+|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 444455567999999999999665 55677888999999966532 223788899888889999864 578
Q ss_pred EEEeCCCcEEEEeCCCCc-------eeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECC--CCeeEEEecccCC
Q 005096 202 VSGDDGGAIKYWQNNMNN-------VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGW 271 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~-------~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~ 271 (715)
++++.|+.|++||+.... ....+.+|.+.|.+++|++ +...|+++++|+.+.|||++ +.+......+|..
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 999999999999987543 3456789999999999998 45678999999999999999 5666677889999
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCe---
Q 005096 272 DVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMK--- 345 (715)
Q Consensus 272 ~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~--- 345 (715)
.|.|++|+|-+ .+||+|+.|++|++||+|+- +++.++.+|...|.+|.|+|+ ...|++++.|+.+.|||+....
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999999954 58889999999999999974 578889999999999999995 5678889999999999996532
Q ss_pred -----------EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 346 -----------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 346 -----------~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.+..-.+|...|..+.|+|.....|++.++|+.+.||+..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2455668999999999999778889999999999999875
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.6e-25 Score=228.90 Aligned_cols=254 Identities=23% Similarity=0.335 Sum_probs=224.2
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee----e---e-----------cCCCCCeEEEEEecCC
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----N---K-----------SAHKESVRDLSFCRTD 240 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~----~---~-----------~~h~~~I~~l~~spd~ 240 (715)
...+..|...|.+|++++|++++++++.+++|.-|++.+++... . + +.|...|.++++++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 55667899999999999999999999999999999987765321 1 0 2677889999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEE
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~ 320 (715)
++|++|+.|..|.|||..+.+.+..+.+|.+.|.+++|-...+.|++++.|..|++|+++....+.++.+|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988889999999999999999988888899999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC--
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-- 398 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-- 398 (715)
..-++.+-+|+.|+++++|++. .+....|.++.+.+-|++|- ++..|++|++||.|.+|++-+.+.+......|.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 8888888888899999999994 55566778899999999998 688999999999999999988887776655542
Q ss_pred ---------CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccc
Q 005096 399 ---------NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 399 ---------~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
..|++|+..+...++++|+.+|.|++|.++.......
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 2799999999999999999999999999977654333
No 109
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=9.8e-25 Score=211.54 Aligned_cols=237 Identities=18% Similarity=0.279 Sum_probs=211.7
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.+.+|+..++.|.|+.+|++|++|+.|.++.||-...++.+.++.+|.+.|+|+++..+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECC-------CCceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~-------s~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
+.+..++ ....|+.+.|+.+|++++.+.++ +.|.++|++ +.+++.++..+.+.++.+.|.+-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999987 66789999999999988877653 679999998 3455777777889999999999999999
Q ss_pred EEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 329 TASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
+|.+||.|.+||+++++. +.+.+.|...|+.|.+++ +..++++++.|.+-++||+.+-..+..... +.+|++.+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEeee--cccccceecc
Confidence 999999999999999854 566688999999999999 899999999999999999988776655553 6799999999
Q ss_pred CCCCEEEEEECCCe
Q 005096 408 PIGYLLCSGSNDHT 421 (715)
Q Consensus 408 pdg~~L~sgs~Dg~ 421 (715)
|....++.|+....
T Consensus 241 P~~d~VilgGGqeA 254 (327)
T KOG0643|consen 241 PLLDHVILGGGQEA 254 (327)
T ss_pred cccceEEecCCcee
Confidence 98777777765433
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-26 Score=248.27 Aligned_cols=284 Identities=20% Similarity=0.356 Sum_probs=231.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEecc---CCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAH---DHAIRSMVWSH-NDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h---~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~ 215 (715)
+..+++|+.+++-..|++++.. .++||.+... ++...++.. ...+..|.|.. +.++|||++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3456778888888888888765 4777765432 122221111 12355678864 4689999999999999999
Q ss_pred CC---CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeC
Q 005096 216 NM---NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 290 (715)
Q Consensus 216 ~~---~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~ 290 (715)
.. .+.+..+..|+..|.+++|+... ++|++|+.||+|++||++..+...++.+....|++|.|+| .+++|+++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 88 56677888999999999999854 7789999999999999999999999998899999999998 4678999999
Q ss_pred CCcEEEEECCC-CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~ 368 (715)
.|.|.+||+|. .++...+..|.+.|.|+.|+|++.|||+|+.|+.|+|||+.+.+...... .....|.+|+|-|....
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 99999999996 45677888999999999999999999999999999999998655433333 24568999999998888
Q ss_pred EEEEEe--CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEECCCeEEEEecC
Q 005096 369 YFVSGS--LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 369 ~l~sgs--~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~Dg~I~iWdl~ 428 (715)
.|++++ .|-.|+|||++........+..|...++.++|.. |...|.+++.||+|..-.++
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 888886 4668999999999998899999999999999976 45678888888887665443
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.7e-23 Score=217.88 Aligned_cols=360 Identities=18% Similarity=0.295 Sum_probs=262.5
Q ss_pred CCCCCCCcccchhhhhcccccccceEeeeh---hhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceee
Q 005096 57 SNPPYDAHGDSFAAKRMRKLTQRRAVDYTS---TVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 133 (715)
Q Consensus 57 ~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (715)
.++.|.+|++.+.+..+.....+.+..-.. .......+|+|+...-..-.... .....+.+++|+.....+...
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g---~f~~GV~~vaFsk~~~G~~l~ 172 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG---FFDRGVTCVAFSKINGGSLLC 172 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeec---cccccceeeeecccCCCceEE
Confidence 578899999998776665433333321111 11223578999833221111111 112223333333332222211
Q ss_pred -----------------eEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE---EeccC-CCEEEE
Q 005096 134 -----------------KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI---LQAHD-HAIRSM 192 (715)
Q Consensus 134 -----------------~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~---l~~h~-~~V~~l 192 (715)
+......+..++.|..+.|+|.+..|++.+..|.+..|+.+.+.+.+. ++.++ ..|.|+
T Consensus 173 ~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v 252 (626)
T KOG2106|consen 173 AVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCV 252 (626)
T ss_pred EecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEE
Confidence 111112333456788999999888788777788999999998776655 33332 569999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----------
Q 005096 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---------- 262 (715)
Q Consensus 193 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~---------- 262 (715)
+|.++|+ ++||+.+|.|.||+..+.........|.+.|.+++...+|.+|- |+.|..|..||-+-.+.
T Consensus 253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred EEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcC
Confidence 9999886 67899999999999988887777779999999999999987555 99999999998311000
Q ss_pred ------------------------------EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 263 ------------------------------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 263 ------------------------------~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
.....+|......++.+++.+.|++++.|+.++||+ ..+.+.+.. ..
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 011235677888999999999999999999999999 444444433 46
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..+.|+.|+|.| .||+|+..|...+.|.++...+..-.. ...+++++|++ ++.+||.|+.|+.|+||.++.......
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 778999999999 999999999999999998555555444 89999999999 899999999999999999977665544
Q ss_pred Ee-eccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 393 IH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 393 ~~-~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.. ..+...|+.|.|+.|+++|.+-+.|-.|.+|+-
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 33 334578999999999999999999999999944
No 112
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-24 Score=230.35 Aligned_cols=281 Identities=20% Similarity=0.329 Sum_probs=238.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceEEEEecc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
-..|+|++|+.+.+.||++-.||.|.||++... -+...+.++ +..|.+++|+ ++..|++.+.+|.|.-||+.+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 467999999999999999999999999998763 445556655 4679999999 6677889999999999999999999
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE--EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~--~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
..+....+.|++++.++.+..++++++||.++++++..++.. +.+...++.|.+++|++++..|++|+.||.|++||+
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 999999999999999999999999999998888888776654 345556789999999999999999999999999999
Q ss_pred CCCceeEEec-------c-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 300 KSGRELCSFH-------G-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 300 ~s~~~~~~~~-------~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
.++..+.... . ...-|+++.|..+ ..|++|...|+|.+||...+..+..++.|...|.+++... +++.++
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vf 261 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVF 261 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeEE
Confidence 9988776321 1 2334778888755 4699999999999999999999999999999999999998 889999
Q ss_pred EEeCCCcEEEEEcCCCCc---eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 372 SGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+++.|+.|..|...+.+. .......|...|.+++...+ .|++|+.|..+.+-....
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 999999999998877654 22334557888999998866 899999999988876544
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=214.02 Aligned_cols=254 Identities=21% Similarity=0.388 Sum_probs=211.5
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iw 255 (715)
+-..|++.|.++...--|++|+|++.|++|+|+.++.+ .++..+.+|.++|..++|.. -|.+||+|+.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34568888999888888999999999999999998764 56788999999999999986 78999999999999999
Q ss_pred ECCCCe--eEEEecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceEEEEEcCC---C-
Q 005096 256 DFARCQ--EERSLTGHGWDVKSVDWHPTK--SLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQN---G- 324 (715)
Q Consensus 256 dl~~~~--~~~~l~~~~~~I~si~~spdg--~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~sl~~spd---g- 324 (715)
.-+++. .......|...|++|+|-|.+ -.|++++.||.|.|.++++. ...+....|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987663 344566799999999998864 58999999999999988754 223345678889999999985 4
Q ss_pred ----------CEEEEEECCCeEEEEECCCCe--EEEEeecCCCCeEEEEEccCC---CCEEEEEeCCCcEEEEEcCCCCc
Q 005096 325 ----------NWVLTASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 325 ----------~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h~~~V~~l~~sp~~---~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+.|++|+.|..|+||+..+++ .-.++.+|...|+.++|.|.. ...|++++.||+|.||..+.+..
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998753 345588999999999999954 35899999999999998875433
Q ss_pred e--EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 390 Q--VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 390 ~--~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
. ..++......++.+.|+..|++|++++.|+.|.+|.-+..++..
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 2 33444466789999999999999999999999999877665543
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=219.05 Aligned_cols=297 Identities=20% Similarity=0.315 Sum_probs=233.7
Q ss_pred ccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEc
Q 005096 74 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWT 153 (715)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~s 153 (715)
|.+....+..+.++...+..|++.+..+-- ... ...++... .. ...--+.++|-.|.+.|+++.|+
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildverml---aks---~~~em~~~-------~~-qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERML---AKS---KPKEMISG-------DT-QARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhh---hhc---chhhhccC-------Cc-ccCCceEeehhhccCcccceeec
Confidence 334444566677888889999998765321 100 11111110 00 01113456788999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee---cCCC
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK---SAHK 228 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~---~~h~ 228 (715)
|....|++|+.|++|++||..+-...+.++ .....|.+|.|+|.|++|++|..-.++++||+++..+.... ..|.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999987643333322 23567999999999999999999999999999987765443 4688
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-c-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-H-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~-~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~ 306 (715)
+.|+++.+++.+++.++++.||.|+|||--+.+++.++.. | +..|.+..|..++++|++.+.|..+++|.+.+++.+.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 9999999999999999999999999999988888888753 4 4579999999999999999999999999999999999
Q ss_pred EeccCC-----CceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 307 SFHGHK-----NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 307 ~~~~~~-----~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
++.+-. .--+...|+....|++.-. ..+.+.-||.|+...+..+. +|++.+..+.-+| .+..+++|+.|-++
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRA 420 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeeccccee
Confidence 887531 1234566887888887765 35689999999987766654 7999999999999 88999999999999
Q ss_pred EEEEcC
Q 005096 380 FHWLVG 385 (715)
Q Consensus 380 ~iwd~~ 385 (715)
++|--+
T Consensus 421 RFWyrr 426 (430)
T KOG0640|consen 421 RFWYRR 426 (430)
T ss_pred eeeeec
Confidence 999653
No 115
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=222.90 Aligned_cols=283 Identities=13% Similarity=0.166 Sum_probs=234.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+.|++|.|+|....|++++.|++++||.++ +...+..+......|.+++|.++|. .+++++....+++||+++.++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999765 4456677777788999999999998 889999999999999988765
Q ss_pred eeee--cCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 221 KANK--SAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 221 ~~~~--~~h-~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
.... .++ ...+..+.+++++++|++.+..|.|.+....+++.+..++ ..+.|.+++|+.|++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 4332 222 3467788899999999999999999999999988888887 56789999999999999999999999999
Q ss_pred ECCCCceeEEeccCCC-ceEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 298 DAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~-~I~sl~~spdg~~Lasgs~dg~I~iwDl~t------~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
|++...+++++....+ .-++++.+.++.|||+|+..|.|.|||..+ -+.+..+..-...|+++.|++ +..+|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhh
Confidence 9999999998863322 246778889999999999999999999754 345667777778899999999 78888
Q ss_pred EEEeC--CCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 371 VSGSL--DGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sgs~--DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
|.+|. +..+++-.+-+-.....+. ...-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 87764 5578887775433222211 2234579999999999999999999999999875
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.9e-25 Score=210.16 Aligned_cols=250 Identities=21% Similarity=0.348 Sum_probs=209.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
.-..|++.|..+...-.|++|||+++|++|+|+..++. +.+.++.+|.+.|..++|.. -|++|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999999999999999999999997763 57889999999999999986 68999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC---eeEEEecccCCceEEEEEcCC---C-
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPT---K- 282 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~---~~~~~l~~~~~~I~si~~spd---g- 282 (715)
.-+.+. .......|...|++++|.|. +-.|++++.||+|.|+++++. ...+....|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 988773 33445679999999999885 467899999999999998654 334556789999999999985 3
Q ss_pred ----------CEEEEEeCCCcEEEEECCCC--ceeEEeccCCCceEEEEEcCCC----CEEEEEECCCeEEEEECCCCeE
Q 005096 283 ----------SLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 283 ----------~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg----~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
+.|++|+.|+.|+||+..++ +..+++.+|.+.|+.++|.|.- .+|++++.||+|.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 57999999999999998875 3445688999999999999953 5799999999999998763211
Q ss_pred ---EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 347 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 347 ---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
...++.....+..+.|+. .+++|++++.|+.|.+|.-+...+
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred cccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCCc
Confidence 233445667899999999 899999999999999997655443
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.8e-24 Score=232.96 Aligned_cols=261 Identities=16% Similarity=0.311 Sum_probs=222.5
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEE-EEEcC-CCCEEEE
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINR-VLWTP-TGRRLIT 161 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~~sp-dg~~Lat 161 (715)
...+..|++++++|+...... + -.+.+.+|.+-|.+ +++-. ++-+|++
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~-------------l-----------------~~~~~~~~~g~i~~~i~y~e~~~~~l~~ 76 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQY-------------L-----------------ETHAFEGPKGFIANSICYAESDKGRLVV 76 (745)
T ss_pred EEeecCCCCceeeeeccCccc-------------c-----------------cceecccCcceeeccceeccccCcceEe
Confidence 566778899999997643331 1 12346677787877 88875 5556999
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCC
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~ 241 (715)
|+.|.+|.||.....+...++++|...|.|+....++. |++|+.|.+++||... ++...+.+|...|++++..+++
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN- 152 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-
Confidence 99999999999999999999999999999999887776 9999999999999654 4555689999999999999887
Q ss_pred EEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEc
Q 005096 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321 (715)
Q Consensus 242 ~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~s 321 (715)
.+++|+.|.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++++.||.|++||+ +++++.++.+|.+-|.+++..
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec
Confidence 8999999999999985 67899999999999999999664 5889999999999999 689999999999999999988
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 322 pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.++..|+++++|++++||+.. ++...+......|.++++-. +++ |++|+.||.|+||..+.
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEeccCceEEEEEecc
Confidence 888999999999999999976 77777776677899998876 444 67788899999998864
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=222.77 Aligned_cols=262 Identities=19% Similarity=0.254 Sum_probs=219.0
Q ss_pred CeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 166 GEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.++.+||+.++.....+++. ...-.++..- ++++++++. ....|.+|.+.............+.|.+++-+++|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 45999999999998888875 2222222222 335666554 34578999988766555555667889999999999999
Q ss_pred EEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceeEEeccCCCc
Q 005096 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---------SGRELCSFHGHKNM 314 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~---------s~~~~~~~~~~~~~ 314 (715)
+.++..+.|++|.+.++..+..+.+|...|+|+.|+-|+.+|++|+.||.|.+|++. +-+.+..|..|.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999763 24567889999999
Q ss_pred eEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC----
Q 005096 315 VLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---- 388 (715)
Q Consensus 315 I~sl~~spd--g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---- 388 (715)
|+.+..... ..+|++++.|.++++||+..+..+.++. ....+.+++++| .+..+++|+.+|.|.+.++....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccc
Confidence 999988764 3689999999999999999999888876 678899999999 89999999999999998874432
Q ss_pred -----------ceEEEeeccCC--CEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 389 -----------PQVEIHNVHDN--TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 389 -----------~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+...
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 22345567877 9999999999999999999999999998653
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=9.4e-24 Score=231.44 Aligned_cols=283 Identities=22% Similarity=0.319 Sum_probs=234.6
Q ss_pred EEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 147 INRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 147 I~~l~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
|++|. +|. =+.|+.|+.+|.+.|||+++++.+.++.++...|+++.=+|-=+.+++|..+|+|.|+++..++.+..+
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 66664 443 357899999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 005096 225 SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS- 301 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s- 301 (715)
+...+.|+.++|..||+. +++++..|.+.+||++..+....+. .|.+.|..+.|.+....|++++.|+.+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 877799999999999976 5667777999999999888777665 6778888888888888888888888777762221
Q ss_pred -C--ce-------------eEEe---------------------------------------------------------
Q 005096 302 -G--RE-------------LCSF--------------------------------------------------------- 308 (715)
Q Consensus 302 -~--~~-------------~~~~--------------------------------------------------------- 308 (715)
| +. ++-+
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 1 00 0000
Q ss_pred -c-------------------------------------c------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 309 -H-------------------------------------G------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 309 -~-------------------------------------~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
. . ....+++++.+..|++.+.|+..|.|.+|++.+|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 0 0134778889999999999999999999999999
Q ss_pred eEEEEe---ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--------------------------------
Q 005096 345 KELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-------------------------------- 389 (715)
Q Consensus 345 ~~~~~~---~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-------------------------------- 389 (715)
-...+| ..|++.|++++..- -++.+++++.+|.+++||+++...
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 999888 58999999999986 678899999999999999976431
Q ss_pred --------eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 --------QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 --------~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.+.+.+|.+.|++++||+||++|++++.|++|++||+-...
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 112234588999999999999999999999999999996543
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=213.38 Aligned_cols=264 Identities=20% Similarity=0.355 Sum_probs=229.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEe
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 237 (715)
.|++.-.+++++ ..+++.+.+|...|..++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 355555555532 24677788999999999988777888999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCcEEEEECC------C----------------------------------CeeEEEecccCCceEEEE
Q 005096 238 RTDLKFCSCSDDTTVKVWDFA------R----------------------------------CQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 238 pd~~~Las~s~Dg~V~iwdl~------~----------------------------------~~~~~~l~~~~~~I~si~ 277 (715)
+.+.++++++.|++-.||... . ...+..+.+|...|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 999999999999999999620 0 011345678888899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCC
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD 356 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~ 356 (715)
|...++.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|-+.++||++. -..+..|.+|...
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999984 3457889999999
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
|+++.|.- +..+++|++|.+|+|||+++-...+..+. .++.++.++.+..+.+|+.--++..|++||++-.
T Consensus 360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 99999985 67789999999999999987766555554 4779999999988889999999999999999753
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.5e-26 Score=246.84 Aligned_cols=256 Identities=24% Similarity=0.479 Sum_probs=227.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 236 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 236 (715)
.+++....+-.++|||... +..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|...|.+|.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3445555566688887653 4467788888888777889999999999999998887777788999999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceE
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
+.+..+|++|+.+|+|++||+++.+.++++.+|...+.++.|+|-+.+++.++.|+.+++||++...|...+++|...+.
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~ 396 (715)
++.|+|+|+|++.+++|..++|||+..++.+.+|+.|...+.++.|++ .+.++++|+.|++|++||+++-..+.... .
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~ 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGK-P 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccC-C
Confidence 999999999999999999999999999999999999999999999999 88999999999999999997654333332 2
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCC
Q 005096 397 HDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 397 h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
....|.++.|+++++.+++|..+.
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 366899999999999888876554
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=6.4e-24 Score=208.14 Aligned_cols=285 Identities=18% Similarity=0.290 Sum_probs=222.4
Q ss_pred CCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce----------EEE-----EeccCCCEEEEEEcCC-CCEEEE
Q 005096 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNF----------EMI-----LQAHDHAIRSMVWSHN-DNWMVS 203 (715)
Q Consensus 141 ~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~----------~~~-----l~~h~~~V~~l~~spd-g~~L~t 203 (715)
..|.+.|+++.+.+ .|+++++|+.||.|.|||+++... +.+ -.+|...|.++.|-|- ...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999987 689999999999999999876430 111 1357788999999884 457788
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
++.|.+++|||.++......++ ..+.|.+-++++- ..+||+|..|-.|++.|+.++...+++.+|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999987776653 4667888888773 35688888899999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCC-ceeEEec--------------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 281 TKS-LLVSGGKDSLVKLWDAKSG-RELCSFH--------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 281 dg~-~L~sgs~Dg~I~iwDl~s~-~~~~~~~--------------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
... .|++|+.||.|++||++.- .+...+. .|.+.|..++|+.|+.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 877 5788999999999999864 3444433 45678999999999999999999999999999887
Q ss_pred eEEEEee---cCCCC-eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 345 KELESFR---GHRKD-VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 345 ~~~~~~~---~h~~~-V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+....-. .|... -..+.....+...++---.++.+.++++-.+..+ +.+..|-..|.|.++.++=..+.++..|+
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i-r~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV-RRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEE-EeeecccceeeEEeecCchhhhhccccCC
Confidence 6532211 11111 0111111114445555566788999988766544 45556888999999999988899999999
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
.|..|..
T Consensus 358 ni~~w~p 364 (397)
T KOG4283|consen 358 NIYMWSP 364 (397)
T ss_pred ccccccc
Confidence 9999976
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=2.4e-24 Score=230.01 Aligned_cols=283 Identities=21% Similarity=0.367 Sum_probs=219.4
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEeCCCCceE------EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 150 VLWTP---TGRRLITGSQSGEFTLWNGQSFNFE------MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 150 l~~sp---dg~~Latgs~dg~I~Iwd~~~~~~~------~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
+.|++ ....|+.+.+||.|.|+|.+..... +....|...|..+.|.+....|++++.|.++++||++..++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44544 2347889999999999998765443 55678999999999999778899999999999999999988
Q ss_pred eee--ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCee---------------------------EEEecccC
Q 005096 221 KAN--KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE---------------------------ERSLTGHG 270 (715)
Q Consensus 221 ~~~--~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~---------------------------~~~l~~~~ 270 (715)
... +.+|...|.+++|.+++ ..|++|+.||.|.|||++.... +.....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 776 88999999999999966 5689999999999999853221 11112334
Q ss_pred CceEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEe--------ccC---CCceEEEEEcCCCCEEEEEECCCe
Q 005096 271 WDVKS---VDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSF--------HGH---KNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 271 ~~I~s---i~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~~--------~~~---~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
..|.+ +.+..|+..||+++. |+.|+|||++........ ..+ ...++++.....|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44555 555668889999887 999999999976543322 112 335788888888999999999999
Q ss_pred EEEEECCCCeE--EEEeecCCCCe--EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-C
Q 005096 336 IKLYDIRAMKE--LESFRGHRKDV--TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-G 410 (715)
Q Consensus 336 I~iwDl~t~~~--~~~~~~h~~~V--~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g 410 (715)
|++||+.+... +..+.++...- ..-..++ ++.+|++|+.|...++|.+++......++.+|.-.|++++|.+. -
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 99999986543 34444333221 1223456 88999999999999999999988888888899999999999885 3
Q ss_pred CEEEEEECCCeEEEEecCCCCCc
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.-++++++|..++||++......
T Consensus 374 t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred CCceeeccCcceEEEeccCchhh
Confidence 45778899999999999654443
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=8e-26 Score=244.10 Aligned_cols=236 Identities=22% Similarity=0.406 Sum_probs=222.1
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+..|...|.|+..-..++.+++|+.|..+-||.+..-..+..+.+|+..|.+|.|+.+..+|++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 44577888888887788899999999999999999888888899999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.+.++.+|...+..+.|+|-+.+++.++.|+.+++||++...+.+.+.+|...|.++.|+|+|++++.+++|.+++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
..|+.+..|+.|...+.++.|++..-+++.|+.|++|++||+++.+.+...+.....|.+++|++ ++..+++|..+
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 99999999999999999999999999999999999999999999999999998899999999999 77777777654
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-24 Score=223.90 Aligned_cols=241 Identities=20% Similarity=0.311 Sum_probs=206.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-------
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN------- 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~------- 216 (715)
-+.|.|++-+++|.+|+.|+..|.|++|.+.+++++..+..|-..|+|+.|+-|+.+|++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 217 --MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 217 --~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+-+....+..|.-.|+++.+... ..+|++++.|.+|++||+..+..+.++. ....+++++++|-+..+++|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 22456778899999999998765 4679999999999999999998888776 667899999999999999999999
Q ss_pred cEEEEECCCC----------------ceeEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 293 LVKLWDAKSG----------------RELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 293 ~I~iwDl~s~----------------~~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9999877532 23456677877 99999999999999999999999999999999999988888
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+.|+.+.+.+.....+..-...-.+-+|++.
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHhh
Confidence 9999999977433333333333345555543
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3.8e-24 Score=223.29 Aligned_cols=257 Identities=17% Similarity=0.302 Sum_probs=203.5
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-----eeeecCCCCCeEEEEEecCCCEEEEEECCC
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
+.....+.+|...|.++++.+.|..|++|+.|-+|++||+..... ..........|+++.|++.+..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 345566788899999999999999999999999999999875321 122234566899999999999999999999
Q ss_pred cEEEEECCCCeeEEE------------ecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-eeEEec-----cC
Q 005096 251 TVKVWDFARCQEERS------------LTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGR-ELCSFH-----GH 311 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~------------l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~-~~~~~~-----~~ 311 (715)
..+|+|-...+.... .++|...++|.+|+|+.+ .|++++.||+++|||+++.+ .+..++ +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999654443332 247888999999999765 88999999999999998643 233332 23
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCCC--CeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.-.+++++|++|+++||+|+.||.|.+||.++... ...-..|.. .|+||+|+. ++++|++-+.|+++++||++.
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccc
Confidence 44689999999999999999999999999865433 233346776 899999999 899999999999999999998
Q ss_pred CCceEEEeec--cCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecCCCCCc
Q 005096 387 ETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNRPGDT 433 (715)
Q Consensus 387 ~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~~~~~~ 433 (715)
-+..+....+ ....-+.++|+|+.++|++|+. .|++.+||..+....
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 7766554433 2335678999999999999864 578999987654443
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.4e-24 Score=234.19 Aligned_cols=203 Identities=13% Similarity=0.322 Sum_probs=174.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~ 216 (715)
..+.||.+.|.+|.||.++ +|++++.|.+|+||++...++++.|. |..-|+||+|+| |++||++|+-||.|+||++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 3578999999999999876 89999999999999999999999886 899999999999 67899999999999999998
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc--------cCCceEEEEEcCCC-CEEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------HGWDVKSVDWHPTK-SLLVS 287 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~--------~~~~I~si~~spdg-~~L~s 287 (715)
..++.... ...+-|++++|+|||+..++|+.+|.+++|++...+....+.. ....|+.+.|.+.. ..|++
T Consensus 441 d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 87776654 4458999999999999999999999999999988776544321 12379999998744 36888
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.+.|..|+|||+++.+.+.+|++..+ .-....|+.||++|+++++|..|+||++..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 88999999999998888888886543 335678899999999999999999999843
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=207.16 Aligned_cols=283 Identities=15% Similarity=0.278 Sum_probs=218.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|...|++++||+||+.|+|++.|..|.+||+..+.....+ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999877665 4
Q ss_pred CCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 227 HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
....|+.+.|++.. +.++++-.+..-.+.++...+....-... .....+..|++.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 57889999999854 33333333444555555442221111111 11223446889999999999999999999999
Q ss_pred CceeEEeccCC-CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE---------EEee--cCCCCeEEEEEccCCCCE
Q 005096 302 GRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---------ESFR--GHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 302 ~~~~~~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~---------~~~~--~h~~~V~~l~~sp~~~~~ 369 (715)
.+++..++... ..|..|.|+..|+.|++-+.|+.||.|+++..... .++. ..+..-.+++|+. ++.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccE
Confidence 99998887655 77999999999999999999999999998732211 1111 1122345678887 6777
Q ss_pred EEEEe-CCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 370 FVSGS-LDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 370 l~sgs-~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
+++++ ....++||....+..+ +++.+.+ ....++.|++-...|++. ..|.|+||........
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLV-KILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enw 327 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLV-KILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENW 327 (405)
T ss_pred EEeccccceeEEEEecCCccee-eeecCCchhheeecccccceeeeeec-cCCceEEEEeecccch
Confidence 76665 3456999998776654 5555555 678899999998888887 6899999998765543
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.8e-23 Score=229.19 Aligned_cols=244 Identities=18% Similarity=0.349 Sum_probs=208.8
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~ 261 (715)
..|....+.|+|.++|++|++++.||.|++|+.... +.-..+..+...|.+++. ++++|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468888999999999999999999999999987765 444444446777777776 45699999999999999998887
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
.-..+....-.+++++|+-+|++++.|++|-.|++.++.+......+++|++.|.+|.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77677777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecC--------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCE
Q 005096 342 RAMKELESFRGH--------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYL 412 (715)
Q Consensus 342 ~t~~~~~~~~~h--------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 412 (715)
.++.+..++.+- ...+..++|+|+++. |+....|+.|++|+.........+...+. ..++++.|+|+|.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998876665421 345778999995454 55556688999999988877777655443 34999999999999
Q ss_pred EEEEECCCeEEEEecCC
Q 005096 413 LCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~ 429 (715)
||+++.||.|.|||+++
T Consensus 247 iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDT 263 (933)
T ss_pred EeeeccCCcEEEEeccc
Confidence 99999999999999985
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=5.4e-22 Score=208.74 Aligned_cols=256 Identities=12% Similarity=0.113 Sum_probs=195.2
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeee
Q 005096 146 SINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 146 ~I~~l~~spdg~~L-atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~ 223 (715)
.+.+++|+++++.| ++++.++.|++||..+++.+..+..+. .+..++|+++++.|+++ ..++.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 36789999999977 566788999999999988877776543 35688999999977654 5689999999998776665
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKS 301 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg-~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~s 301 (715)
+.. ...+.+++|+++++++++++.++ .+.+||.++.+.+..+. ....+.+++|++++++|+++ ..++.|++||+++
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 542 34568899999999999988765 56778998877665543 23456789999999988655 4589999999999
Q ss_pred CceeEEeccCC-------CceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 302 GRELCSFHGHK-------NMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 302 ~~~~~~~~~~~-------~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
++.+..+..+. .....++|++++++++++ ..++.|.+||+++++.+..+. +...+.+++|++ ++.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEE
Confidence 88776654221 123568899999986654 456789999999888776654 445799999999 66666665
Q ss_pred -eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC
Q 005096 374 -SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 374 -s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (715)
..+|.|++||+++...+..+.. ....+.+++++
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 5689999999998776666643 35668887753
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.3e-25 Score=219.87 Aligned_cols=246 Identities=22% Similarity=0.386 Sum_probs=215.3
Q ss_pred eEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 178 FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
.+..+.+|.+.|.|++=+++. ..+++|+.||.|+|||+...++...+..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455567899999999999887 7889999999999999999999999999999999999976 7799999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCe
Q 005096 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQI 335 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~ 335 (715)
++. ..++++. ....+..|+-+..++.++|++. .|.|||......+..+......|.++.|++.. ..|++|.+|+.
T Consensus 136 ~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 865 3556655 3445677777777788888875 59999999888999998888899999999955 56677779999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
|.|||+++...+..+. ....-+.|+|+| ....|+++++|..++.||++.-.....+..+|.+.|.+++|+|.|.-|++
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999999887765 445568899999 88899999999999999999998888899999999999999999999999
Q ss_pred EECCCeEEEEecCCCC
Q 005096 416 GSNDHTTKFWCRNRPG 431 (715)
Q Consensus 416 gs~Dg~I~iWdl~~~~ 431 (715)
||.|.+|+||.++...
T Consensus 290 gsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGH 305 (433)
T ss_pred ccccceEEEeecCCCc
Confidence 9999999999987543
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5e-23 Score=203.38 Aligned_cols=265 Identities=19% Similarity=0.400 Sum_probs=199.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ----SFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~----~~~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
..+|.+-|+|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|++.|..|.|.+ -|+.+|+++.|++|.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 45799999999999999999999999999999954 3567778899999999999965 37999999999999999
Q ss_pred eCCC---------CceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCC------eeEEEec-------cc
Q 005096 214 QNNM---------NNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARC------QEERSLT-------GH 269 (715)
Q Consensus 214 d~~~---------~~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~------~~~~~l~-------~~ 269 (715)
.-.. -....++......|++++|.| -|..||+++.||+||||+.-+- .....+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 123455677888999999998 4678999999999999986432 2222222 35
Q ss_pred CCceEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----ceeEEeccCCCceEEEEEcCC----CCEEEEEECC
Q 005096 270 GWDVKSVDWHPT---KSLLVSGGKD-----SLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN----GNWVLTASKD 333 (715)
Q Consensus 270 ~~~I~si~~spd---g~~L~sgs~D-----g~I~iwDl~s~----~~~~~~~~~~~~I~sl~~spd----g~~Lasgs~d 333 (715)
.....||.|++. ..+|++|+.+ +.++||....+ ..+.++.+|...|+.|+|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 567789999974 3478888766 47889876532 345566789999999999995 3578999999
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
| |+||.++....-. . .+..+ +.+.-+.+.| ..+..+..|.+.|+.+.|+-.|..|
T Consensus 249 g-v~I~~v~~~~s~i-~---------------~ee~~-~~~~~~~l~v-------~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAI-E---------------EEEVL-APDLMTDLPV-------EKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred c-EEEEEEeeccchh-h---------------hhccc-CCCCccccce-------EEeeeccCCCCceEEEEEeeeeeEE
Confidence 9 9999987432111 0 00111 0111111111 2234566799999999999999999
Q ss_pred EEEECCCeEEEEecCC
Q 005096 414 CSGSNDHTTKFWCRNR 429 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~ 429 (715)
++.+.||+||+|..+-
T Consensus 304 sStGdDG~VRLWkany 319 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANY 319 (361)
T ss_pred eecCCCceeeehhhhh
Confidence 9999999999998754
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.8e-24 Score=221.50 Aligned_cols=238 Identities=19% Similarity=0.314 Sum_probs=209.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
....|+++.+.+||+.|++|++-.+|.|||+..-. +...+....-...+++.++|.+..++++.||.|.|||+....+
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 35568999999999999999999999999987543 3344444445678899999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
++.+.+|.+.+.||.++.||..|-+|+-|++||.||++++..+.... ....|.++..+|++.+|++|-+++.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999887665543 56789999999999999999999999988866
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
+.....+..|.+-|.++.|...|+|+++.+.|+.+..|.+--|..+...+ ..+.|.++.++. ++++|+||+.|....
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKAT 699 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceE
Confidence 44456667789999999999999999999999999999998888887766 567799999998 899999999999888
Q ss_pred EEEc
Q 005096 381 HWLV 384 (715)
Q Consensus 381 iwd~ 384 (715)
||.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8875
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-22 Score=200.82 Aligned_cols=264 Identities=19% Similarity=0.336 Sum_probs=208.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...|++|.|++.++.|++++.||++++||+....+...+ .|...+.+++|.. ...+++|+.||.|+++|++++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence 578999999999999999999999999999988665554 6889999999985 578999999999999999887554 4
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
+..|...|.||.+++....+++|+.|++|++||.+....+..+. ....|.|+..+ ++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 55699999999999988999999999999999999755555555 34478888775 7789999999999999999877
Q ss_pred EEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccC---------CCEEEEEEcCCCC
Q 005096 346 ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHD---------NTVWDLAWHPIGY 411 (715)
Q Consensus 346 ~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~---------~~V~~l~~spdg~ 411 (715)
.....+ ..+-.+.+|++.| ++.-+++++-||+|.+=.++..... .-.+..|. .+|++|+|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 655332 3445689999999 7888888999999988766655111 11122232 2699999999999
Q ss_pred EEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccC
Q 005096 412 LLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPL 463 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 463 (715)
.|+||+.||.|.+||+...++ +....+|......++++.+|..++
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKr-------l~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKR-------LKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred eEEecCCCceEEEccCcchhh-------hhhccCCCCceEEEEeccCCCeEE
Confidence 999999999999999854222 233455655566677776655543
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.4e-24 Score=234.46 Aligned_cols=242 Identities=26% Similarity=0.511 Sum_probs=204.7
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce
Q 005096 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+..|.|+. +.++|||++.+|.|.+||+.. .+.+..|..|+..|+++.|+... ++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466778875 567899999999999999987 56677889999999999998764 7889999999999999999998
Q ss_pred eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 221 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+.++.+..+.|+++.|++ .+.+|+++.+.|.|.+||++.. +....+.+|.+.|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888889999999999998 5688999999999999999754 45677889999999999999999999999999999999
Q ss_pred CCCCce--eEEeccCCCceEEEEEcCCCCE-EEEEE--CCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 299 AKSGRE--LCSFHGHKNMVLCVKWNQNGNW-VLTAS--KDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 299 l~s~~~--~~~~~~~~~~I~sl~~spdg~~-Lasgs--~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
..+.+. +.++. ....|.+|+|-|+..+ |++++ .|-.|+|||++.- -...++..|...++.++|...+...|.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986543 33333 4578999999997654 55555 5678999999754 3467888999999999998766778899
Q ss_pred EeCCCcEEEEEcCCCC
Q 005096 373 GSLDGSIFHWLVGHET 388 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~ 388 (715)
++.||+|..-.+++..
T Consensus 328 ~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNAT 343 (839)
T ss_pred ecCccHHHHhhhhccc
Confidence 9999988766555443
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.1e-22 Score=200.64 Aligned_cols=243 Identities=20% Similarity=0.382 Sum_probs=193.2
Q ss_pred ccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-ce-eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 184 AHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN-NV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 184 ~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~-~~-~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.-++.|.+|+||| ...+|++++.|++|++|+++.. .. -+....|...|.+++|+.|+..+++++.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 4566679999999999998873 22 2344678999999999999999999999999999999998
Q ss_pred eeEEEecccCCceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~--~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i 338 (715)
.+..+..|...|.++.|-+... .|++|+.|.+|+.||+|....+.++. ....+.++..- ..+++++..++.|.+
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 5566778999999999987665 89999999999999999998888887 45556666543 457888999999999
Q ss_pred EECCCCeEEE-Eee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC--CceEEEeeccC---------CCEEEEE
Q 005096 339 YDIRAMKELE-SFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--TPQVEIHNVHD---------NTVWDLA 405 (715)
Q Consensus 339 wDl~t~~~~~-~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~--~~~~~~~~~h~---------~~V~~l~ 405 (715)
|++++..... ... ..+-.++||++.. +.+..+.|+-+|++.|..++.. +.-+. +.-|. ..|++|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFt-FkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFT-FKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCcee-EEEeccCCCCCCceEEecceE
Confidence 9997654322 111 2334588999888 5666699999999999988775 22222 22233 2588999
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|+|....|+|++.||++.+||-+...+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhh
Confidence 999989999999999999999765333
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.4e-21 Score=203.71 Aligned_cols=287 Identities=17% Similarity=0.239 Sum_probs=228.5
Q ss_pred CCCCccEEEEEEcC--CCCEEEEEe--CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 141 NKNRCSINRVLWTP--TGRRLITGS--QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 141 ~~H~~~I~~l~~sp--dg~~Latgs--~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
......|.|++||+ .|.+|+... .+..+.|||...+......+..++.|....|+|.+..|++....+.+.+|+++
T Consensus 151 g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 151 GFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred ccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 35667899999997 355555553 35568999999988888888888999999999987666555567899999998
Q ss_pred CCceeeee----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 217 MNNVKANK----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 217 ~~~~~~~~----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
.+.+.+.. +..+..|.|++|.+++. +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDR 308 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDR 308 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccc
Confidence 87655443 22346799999999886 77999999999999998888888779999999999999887555 99999
Q ss_pred cEEEEECCCCc--e---------eE-----------------------------EeccCCCceEEEEEcCCCCEEEEEEC
Q 005096 293 LVKLWDAKSGR--E---------LC-----------------------------SFHGHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 293 ~I~iwDl~s~~--~---------~~-----------------------------~~~~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
.|..||-+-.+ . ++ ...+|......++.+++.+.+++++.
T Consensus 309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence 99999832110 0 00 11245667788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 333 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 333 dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
|+.++||+ ..+.+.+. .....+.|+.|+| .+ .|+.|+..|...+.|.++ ...+.+... ...+++++|+++|.+
T Consensus 389 dk~v~lW~--~~k~~wt~-~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTK-IIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred cceEEEcc--CCceeEEE-EecCceeEeeccC-cc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCE
Confidence 99999999 33444333 3567889999999 55 999999999999999988 444455544 789999999999999
Q ss_pred EEEEECCCeEEEEecCCCCCcccc
Q 005096 413 LCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
||.|+.|+.|+||.++..+.....
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEEEE
Confidence 999999999999999887765543
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=3.7e-22 Score=206.36 Aligned_cols=291 Identities=18% Similarity=0.262 Sum_probs=225.2
Q ss_pred EEEecCCCCccEEEEEEcCCC--CEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCC
Q 005096 136 VHTSLNKNRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGG 208 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg--~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg 208 (715)
....++-+.++|++++|+|.. ++||+|+.-|.|-+||+.+ ...+..+..|...|.+|.|+|.+ ..+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 344566789999999999965 4788999999999999942 33466778899999999999964 6888999999
Q ss_pred cEEEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCC-E
Q 005096 209 AIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKS-L 284 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~-~ 284 (715)
+|++-|++.......+. .....+.++.|+.+...++++..-|.+.+||+++... ...+.-|...|++|+++|-.. +
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999998875443333 3556678888888888888888888999999987655 556677888999999999764 8
Q ss_pred EEEEeCCCcEEEEECCCC--ce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC----CCeEEEEeecCC--
Q 005096 285 LVSGGKDSLVKLWDAKSG--RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR----AMKELESFRGHR-- 354 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~--~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~----t~~~~~~~~~h~-- 354 (715)
|++++.|++++|||++.- +. +.....|...|.+..|||++-.|++.+.|..|+|||.. ....+.++. |.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 899999999999999853 22 23345699999999999988779999999999999984 233333333 22
Q ss_pred --C--CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE-EEEcCCCC-EEEEEECCCeEEEEecC
Q 005096 355 --K--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGY-LLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 355 --~--~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~-~L~sgs~Dg~I~iWdl~ 428 (715)
. ......|.| +..+|++|..-..|-|+|-+.+..+.++.......|.+ ..|+|-+. +++-++..|.|+||.-+
T Consensus 417 t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 2 244568999 89999999999999999987776555544433334544 47999887 44555567889988643
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-22 Score=209.78 Aligned_cols=261 Identities=17% Similarity=0.300 Sum_probs=214.6
Q ss_pred EEEEEEcCCCCEEEEE--eCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 147 INRVLWTPTGRRLITG--SQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 147 I~~l~~spdg~~Latg--s~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
|.++.|+.... |+++ +.|..|++|.-.. .+....-+.....-.|++......|+++|+..+.|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 88999988774 4444 5577888996332 22222222222244455555555899999999999999999888888
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCceEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~ 300 (715)
.+++|.+.|+++.+...+.+||+++..|.|.|..+.++.....|... ...|+-+.|++..+ +|.+++++|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999999999999999999988887777654 44567899999776 66788999999999999
Q ss_pred CCceeEEe-ccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 301 SGRELCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 301 s~~~~~~~-~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
....+..+ +.|......|+|+| +..+|++.+.|..|.+||++..+....+. .+...+.++|++ ++.+|++|+..|.
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGE 273 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCce
Confidence 77766654 57899999999999 55678889999999999999766666554 667899999999 9999999999999
Q ss_pred EEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 379 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
|+.||++..+..+.+...|+..|++++|-+.-
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999999999998764
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.4e-22 Score=205.32 Aligned_cols=280 Identities=22% Similarity=0.368 Sum_probs=209.4
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceEEEEeccC----CCEEEEEEcC-------CCCEEEEEeCCCcEE
Q 005096 148 NRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHD----HAIRSMVWSH-------NDNWMVSGDDGGAIK 211 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~~h~----~~V~~l~~sp-------dg~~L~tgs~dg~I~ 211 (715)
-.+.+-|+.++|+++-.+. .|+||+-... ..+..|+ ..-.|++|.. .|+++|+|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 3455667666777775432 3566664431 1222232 2235677743 258999999999999
Q ss_pred EEeCCCCce---------------------eeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc
Q 005096 212 YWQNNMNNV---------------------KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 212 iwd~~~~~~---------------------~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
|||+.-... .....+|++.|.+|+|+.+- +.||+|+.|.+|++||+.++++..++..|
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 999753210 00113588888899998754 56899999999999999999999999999
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eE
Q 005096 270 GWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KE 346 (715)
Q Consensus 270 ~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~-~~ 346 (715)
...|.+++|++.. .+|++|+.|++|.++|+|........-...+.|..++|.+. ...+++++.||+|+-+|+|.. +.
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 9999999999864 58999999999999999953332222225678999999995 467778889999999999975 89
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE-EeeccCCCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKF 424 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~i 424 (715)
+.+++.|+..|.+|+++.....++++++.|+.|++|++........ .....-+...|.++.++ -.+|+.|+..+.++|
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 9999999999999999998889999999999999999865443211 11111234667777777 357788888889999
Q ss_pred EecCCC
Q 005096 425 WCRNRP 430 (715)
Q Consensus 425 Wdl~~~ 430 (715)
||+...
T Consensus 446 wd~~~~ 451 (463)
T KOG0270|consen 446 WDIFTN 451 (463)
T ss_pred eecccC
Confidence 998653
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.5e-22 Score=197.03 Aligned_cols=215 Identities=23% Similarity=0.375 Sum_probs=179.6
Q ss_pred eecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCee----------EE-----EecccCCceEEEEEcC-CCCEE
Q 005096 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQE----------ER-----SLTGHGWDVKSVDWHP-TKSLL 285 (715)
Q Consensus 223 ~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~----------~~-----~l~~~~~~I~si~~sp-dg~~L 285 (715)
....|.+.|+++.+.+ .++++++|+.||.|.+||+++... +. .-.+|+..|.++.|.| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999876 678999999999999999965331 11 1135778899999998 44588
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd---g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
.+++.|.++++||.++......|+ ..+.|.+-+++|- --+||+|..|-.|++.|+.+|..-.++.+|...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 889999999999999988888887 5677888888883 347788888999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEE--------------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEI--------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~--------------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+|..+.+|++|+.||.|++||++.....+.. ...|.+.|+.++|+.|+.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 9988889999999999999999865333222 33577889999999999999999999999999998
Q ss_pred CCCCcccccc
Q 005096 429 RPGDTARDKF 438 (715)
Q Consensus 429 ~~~~~~~~~~ 438 (715)
......++-.
T Consensus 277 ~G~ntl~~~g 286 (397)
T KOG4283|consen 277 SGRNTLREFG 286 (397)
T ss_pred cCcccccccc
Confidence 8777666533
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.7e-21 Score=210.07 Aligned_cols=317 Identities=20% Similarity=0.336 Sum_probs=232.6
Q ss_pred EEEEecCCCCccEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~---~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
.+.+++.+|..+|+|+.|-++.+ ++++|+.|+.|++|.++.... +..+.+|. +.++++........+.+.|+.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGT 122 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCce
Confidence 45678999999999999999887 899999999999999884433 34445544 445555433333333368999
Q ss_pred EEEEeCCCCc--eeeeecCCCCC--eEEEEEecCC-CE-EEEEECCCcEEEEECC--CCeeEEEecccCCceEEEEEcCC
Q 005096 210 IKYWQNNMNN--VKANKSAHKES--VRDLSFCRTD-LK-FCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 210 I~iwd~~~~~--~~~~~~~h~~~--I~~l~~spd~-~~-Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spd 281 (715)
+.+||.+..+ +...+...... -.|+++.++. .+ ++.|+.+..|.++.-. +.+.+..+.+|.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 9999995555 22222222222 2355555533 33 4556667777777643 34667888999999999999875
Q ss_pred CC---EEEEEeCCCcEEEEECCCCc---------------------eeEE----------eccCCCceEEEEEcCCCCEE
Q 005096 282 KS---LLVSGGKDSLVKLWDAKSGR---------------------ELCS----------FHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 282 g~---~L~sgs~Dg~I~iwDl~s~~---------------------~~~~----------~~~~~~~I~sl~~spdg~~L 327 (715)
+. +|++++.|..||||.+.-+. .+.. +.+|.++|.++.|++.+..|
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 44 88999999999999764221 0111 13899999999999999999
Q ss_pred EEEECCCeEEEEECCCC--eEEE-----EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC--ceEEEeeccC
Q 005096 328 LTASKDQIIKLYDIRAM--KELE-----SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQVEIHNVHD 398 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~--~~~~-----~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--~~~~~~~~h~ 398 (715)
++++.|.++.||.-.+. --+. ...+.........|++ +++.|++-+..|..++|...... .......+|.
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 99999999999976543 2222 2223445688999999 88999999999999999832221 2234567899
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEee
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAG 455 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 455 (715)
+.|.+++|++.|.+|++++.|-+-|||-.. ..+..++++.+..++||+..+..+..
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehcc
Confidence 999999999999999999999999999876 33444888888999999887776665
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.4e-22 Score=207.64 Aligned_cols=270 Identities=15% Similarity=0.200 Sum_probs=215.1
Q ss_pred EEeCCCeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC--ceeeeecCCCCCeEEEE
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLS 235 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~ 235 (715)
+++...+++|||....+....+..|+ -.+.+++|+....++ ++.+.|..|++|.-+.. ++...-+...+.-.|++
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 33334469999988776665555443 348999998765432 34456788999965433 23222233333455566
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-CCc
Q 005096 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-KNM 314 (715)
Q Consensus 236 ~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-~~~ 314 (715)
......++++++..++|+|||++...+.+.+++|...|+++.++-.+.+|++++..|.|.|..+.++.....|... ...
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 5566689999999999999999987788889999999999999999999999999999999999998877777644 445
Q ss_pred eEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 315 VLCVKWNQNGNW-VLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 315 I~sl~~spdg~~-Lasgs~dg~I~iwDl~t~~~~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
|+-+.|++..+. |.+++.+|.|.+||+.....+..+ +.|......|+|+|.+..+|++.+.|..|.+||++.......
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 678999997665 557889999999999877766554 579999999999999999999999999999999997776666
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.. +.+.+.++|.++|.+|++|+..|.|..||+.....
T Consensus 247 l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 247 LTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eee--cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 665 44889999999999999999999999999965544
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.2e-21 Score=195.05 Aligned_cols=291 Identities=21% Similarity=0.307 Sum_probs=224.0
Q ss_pred eEEEEecCCCCccEEEEEEcC----CC-CEEEEEeCCCeEEEEeCCCCceEEEEe-----ccCCCEEEEEEcCCC----C
Q 005096 134 KFVHTSLNKNRCSINRVLWTP----TG-RRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHND----N 199 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~sp----dg-~~Latgs~dg~I~Iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg----~ 199 (715)
++.......|+..|..++|+. +. ..+++++. ..+.||+......++.+. .|++....++|+-|. -
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 444556778999999999985 22 34555554 468888865433233322 367788899997653 3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKS 275 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~s 275 (715)
+||+++.-|.|+|.|+.++++...+.+|...|+.|.++|+. ++|++++.|.+|++||+.+..++..+ .+|.+.|.+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 78888999999999999999999999999999999999976 68899999999999999999998887 468999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCce------eE----------------------EeccCCCceEEEEEcCCCCEE
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRE------LC----------------------SFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~------~~----------------------~~~~~~~~I~sl~~spdg~~L 327 (715)
++|+.++.+|++++.|..|++|++...+. .. +...|...|.|+.|- |+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 99999999999999999999999974211 00 112355666777775 6889
Q ss_pred EEEECCCeEEEEECC-CC-------------eEEEEeecCCCCeEEEEEccC-CCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 328 LTASKDQIIKLYDIR-AM-------------KELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 328 asgs~dg~I~iwDl~-t~-------------~~~~~~~~h~~~V~~l~~sp~-~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
++-+-++.|..|..- -. ..+.++......|..|.|.-+ -.++||.|...|.|++||++.......
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 998889999999872 11 123444555556666655431 467899999999999999987665321
Q ss_pred ---EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 393 ---IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 393 ---~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
........|...+|+.|+.+|+..++|++|.-||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22223457999999999999999999999999986
No 145
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.5e-21 Score=199.35 Aligned_cols=290 Identities=19% Similarity=0.314 Sum_probs=224.1
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC---------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+|.++.|..+.. +|+||+.|..|+||.++.. +....+..|...|++|.|+++|++|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 456899999998776 9999999999999975532 234567789999999999999999999999999999
Q ss_pred EeCC--------C--------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 213 WQNN--------M--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 213 wd~~--------~--------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
|... + ......+.+|...|..++|++|+.++++++.|+.+++||+..+..+..+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 12445567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEec----------c---------C----CCceEEEEEcCCCCEEEEEE--
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH----------G---------H----KNMVLCVKWNQNGNWVLTAS-- 331 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~----------~---------~----~~~I~sl~~spdg~~Lasgs-- 331 (715)
+|.|-+.++++-+.|...+++++...+.+.... . | ..-...++|+|||.+|++.+
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999999877777765433322111 0 1 12245688999999998754
Q ss_pred --CCC-----eEEEEECCCC-eEEEEeecCCCCeEEEEEccC-----------------CCCEEEEEeCCCcEEEEEcCC
Q 005096 332 --KDQ-----IIKLYDIRAM-KELESFRGHRKDVTALAWHPF-----------------HEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 332 --~dg-----~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~-----------------~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.++ ..++|+-... +.+..+.+....+..+.|+|. .+..++.++ ...|+|||..+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 122 2345543322 223444444445555544431 223445555 45899999999
Q ss_pred CCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
......+...|-..|++++|+.||..|+..|.||.+.+-.++..+..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 88888888899999999999999999999999999988877654443
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=7.7e-22 Score=199.56 Aligned_cols=245 Identities=25% Similarity=0.465 Sum_probs=193.6
Q ss_pred EEecCCCCccEEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------------CceEEEEeccCCCEEEEEEcCCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQS----------------FNFEMILQAHDHAIRSMVWSHND 198 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~--~Latgs~dg~I~Iwd~~~----------------~~~~~~l~~h~~~V~~l~~spdg 198 (715)
....-.|.+.|+.+..++-++ +.++-+..|.|.|||+.. .+.+.++.+|...=+.|+||+-.
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 334557888888888887654 445557789999998542 34567788899999999999843
Q ss_pred -CEEEEEeCCCcEEEEeCCCCcee---eeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCee--EEEecccCC
Q 005096 199 -NWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE--ERSLTGHGW 271 (715)
Q Consensus 199 -~~L~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~--~~~l~~~~~ 271 (715)
..|++|..-+.|++|...++.-. .-+.+|+..|.+|+|+|.. ..|++|+.||+|+|||++.+.. ....+.|..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 35888888899999998876432 2346799999999999954 6789999999999999988722 223378999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE-
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE- 346 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s---~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~- 346 (715)
.|+.|.|+.+..+|++|++||+++|||+|. ++.+..|+-|+..|+||.|+| +...|++++.|..|.|||+.....
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 999999999888999999999999999985 567889999999999999999 456788888999999999864221
Q ss_pred -----------------EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 347 -----------------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 347 -----------------~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
+.-+......|..+.|++....+|++.+.||.-.+
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 11111234568889999988899999999985443
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9e-21 Score=204.46 Aligned_cols=244 Identities=18% Similarity=0.282 Sum_probs=206.6
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-eeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-KANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~-~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
....|.+++|+.+.+.||++-.||.|.||++..+-. ...+. .....|.+|+|+ ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 457899999999999999999999999999987633 33333 345689999999 667789999999999999999999
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+..+....+.|++++.++.+..+++||+||.+++++...++.... +...++.|.+++|++++..|+.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 999999999999999999999999999999888888887765543 344568899999999999999999999999999
Q ss_pred CCCCeEEEEee-----c---CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 341 IRAMKELESFR-----G---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 341 l~t~~~~~~~~-----~---h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
..++..+.... . ...-|.++.+- ....|++|...|+|.+||...+...... ..|...|.+++.+.++..
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDR 259 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCe
Confidence 99988876322 1 22346777776 4788999999999999999877655444 458999999999999999
Q ss_pred EEEEECCCeEEEEecCCCCC
Q 005096 413 LCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|++++.|+.|..|..+..+.
T Consensus 260 vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEccCCCceEEEEecCCcc
Confidence 99999999999999876655
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.1e-19 Score=196.67 Aligned_cols=291 Identities=27% Similarity=0.520 Sum_probs=240.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eEEEEeccC-CCEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHD-HAIRSMVW-SHNDN-WMVSGDD-GGAIKYW 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-~~~~l~~h~-~~V~~l~~-spdg~-~L~tgs~-dg~I~iw 213 (715)
.+..|...|.++.|..++..++.++.|+.+.+|+..... ....+..+. ..+..+.+ +.++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999998886 666666644 37777777 77777 5555444 8999999
Q ss_pred eCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeC
Q 005096 214 QNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGK 290 (715)
Q Consensus 214 d~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~ 290 (715)
+... ......+..|...|.+++|++++..+++++. |+.+++|++.....+..+..|...|.+++|++++. ++++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7788888899999999999999998888885 99999999998888888888999999999999988 5555589
Q ss_pred CCcEEEEECCCCceeE-EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~-~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
|+.|++||...+..+. .+..|...+ ...|++++.++++++.|+.+++||++.... +..+..|...|.++.|++ ++.
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCC
Confidence 9999999999887777 577777765 448999998899999999999999987665 455567889999999999 677
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEe-eccCCCEEEEEEcCCCCEEEEE-ECCCeEEEEecCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSG-SNDHTTKFWCRNRPG 431 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sg-s~Dg~I~iWdl~~~~ 431 (715)
.+++++.|+.+.+||........... ..|...|..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77778888889999887776555544 4577779999994232455555 688999999997765
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-22 Score=231.05 Aligned_cols=282 Identities=21% Similarity=0.403 Sum_probs=221.1
Q ss_pred EEEEEcCCCC-EEEEE----------eCCCeEEEEeCCCC--c----eEEEEeccCCCEEEEEEcCCCCE----EEEEeC
Q 005096 148 NRVLWTPTGR-RLITG----------SQSGEFTLWNGQSF--N----FEMILQAHDHAIRSMVWSHNDNW----MVSGDD 206 (715)
Q Consensus 148 ~~l~~spdg~-~Latg----------s~dg~I~Iwd~~~~--~----~~~~l~~h~~~V~~l~~spdg~~----L~tgs~ 206 (715)
..++|+|++. +|++| +.+.++.||.+... + .+..+. .....+.++|.+.+.. |+.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578999886 55554 23455666654322 2 122221 3467889999987765 888999
Q ss_pred CCcEEEEeCCC------CceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEE
Q 005096 207 GGAIKYWQNNM------NNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVD 277 (715)
Q Consensus 207 dg~I~iwd~~~------~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~ 277 (715)
||.|.+||... ..++..+..|.+.|..|.|++... .||+|+.||.|.|||+++.+.-..+. ...+.|.+|+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999654 235666788999999999999665 99999999999999998755444432 2457899999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCC--ceEEEEEcCCC-CEEEEEECCC---eEEEEECCCC-eEEEE
Q 005096 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM-KELES 349 (715)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~--~I~sl~~spdg-~~Lasgs~dg---~I~iwDl~t~-~~~~~ 349 (715)
|+..- .+|++++.+|.+.|||+|..+.+..+..+.. .+..|+|+|+. ..|++++.|. .|.+||+|.- ..+++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 99754 4788899999999999999888887765544 47889999976 4566666554 7999999864 45788
Q ss_pred eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecC
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~ 428 (715)
+.+|...|.++.|++.|.++|++++.|++|.+|+.++++.+..+-. ..+.+..+.|++..- +|++++-||.|.||.+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8999999999999998889999999999999999999877666654 577899999999764 88899999999999986
Q ss_pred CCC
Q 005096 429 RPG 431 (715)
Q Consensus 429 ~~~ 431 (715)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 554
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4e-21 Score=190.43 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=207.9
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee----eecCCCCCeEEEEEecCCCEEEE-EECCCcEEE
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKV 254 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~----~~~~h~~~I~~l~~spd~~~Las-~s~Dg~V~i 254 (715)
..+++|.+.|++++|+.||++|++++.|++|+||+++...... ......+.-+.+.|.+|-+.++. +-...+|++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3467999999999999999999999999999999987643211 11122345678999999876554 445668999
Q ss_pred EECCCCee---EE---------EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 255 WDFARCQE---ER---------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 255 wdl~~~~~---~~---------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
|.+...+. .. .-+.|.-.|.++-...++++|.+++.|..|.|||++ |+.+..+......-+..+.||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 98743211 11 112355566777777788899999999999999999 888988887777788899999
Q ss_pred CCCEEEEEECCCeEEEEECC---CC-----eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-----
Q 005096 323 NGNWVLTASKDQIIKLYDIR---AM-----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----- 389 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~---t~-----~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~----- 389 (715)
+|++|++++..-.|+||.+- .| +.+..+++|...|..++|++ +...+++.+.||+++|||.+-...
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCc
Confidence 99999999999999999863 22 34677899999999999999 889999999999999999853211
Q ss_pred -eEE----EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccCC
Q 005096 390 -QVE----IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLP 464 (715)
Q Consensus 390 -~~~----~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 464 (715)
+.+ .+....+.-..|+.+|+|..|+.+. ...|++|..++.++... + . ..++.....+++..+|.+++.
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~--~--e--~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE--L--E--DIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh--H--H--HhhcCceeeEEecCCCcEEee
Confidence 111 1112233445899999999888765 56799998766333221 1 1 223345566677777888877
Q ss_pred CCCCCCC
Q 005096 465 EGPTTPG 471 (715)
Q Consensus 465 ~~~~~~g 471 (715)
++.+-+.
T Consensus 391 cGdr~vr 397 (420)
T KOG2096|consen 391 CGDRYVR 397 (420)
T ss_pred ecceeee
Confidence 7665444
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.4e-21 Score=207.84 Aligned_cols=121 Identities=11% Similarity=0.203 Sum_probs=102.4
Q ss_pred ecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce------EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005096 139 SLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~ 211 (715)
.|.+|.+.|+.+.|++- ..+||+|+.|..|+||.+..+.. ...+...+-.|.|+.|++..+-|+..+..|+++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 46789999999999994 45788999999999999874321 222334455688999999876666666779999
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 259 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~ 259 (715)
|||+.+.+....+..|.+.|.+..|+.||++|++++.|..|+|||-+.
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999999999999999999999999999999999999999999753
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=4.8e-19 Score=191.56 Aligned_cols=290 Identities=29% Similarity=0.534 Sum_probs=237.2
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 212 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~i 212 (715)
.....+..|...|.+++|+++++++++++. |+.+++|+..+.+.+..+..|...|.+++|++++. ++++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 345567899999999999999998988886 99999999999889999999999999999999887 5555599999999
Q ss_pred EeCCCCceee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 213 WQNNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 213 wd~~~~~~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
||...+.... .+..|...+ ...|++++.++++++.|+.+++||+..... ...+..|...|.++.|++++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9988777777 577777775 448999998899999999999999976654 4444567889999999998888888999
Q ss_pred CCcEEEEECCCCceeEEec--cCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCC
Q 005096 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~ 367 (715)
|+.+.+||+++........ .|...+..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+.. +
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~- 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D- 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-
Confidence 9889999999887766665 677779999994232556655 6789999999988773333332222 88999998 7
Q ss_pred CEEEE-EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 368 EYFVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 368 ~~l~s-gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..++. +..++.+.+|+.............+ ..+..+.++.++..+++++.++.+++|++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 55555 8899999999998876655554322 6899999999999999999999999999976
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.5e-22 Score=226.76 Aligned_cols=245 Identities=20% Similarity=0.370 Sum_probs=204.8
Q ss_pred CccEEEEEEcCCCCE----EEEEeCCCeEEEEeCCC------CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Q 005096 144 RCSINRVLWTPTGRR----LITGSQSGEFTLWNGQS------FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKY 212 (715)
Q Consensus 144 ~~~I~~l~~spdg~~----Latgs~dg~I~Iwd~~~------~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~i 212 (715)
..+.++++|++.+.. ||.|.+||.|.+||... ...+..+..|++.|..+.|++.. ++|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678999987766 88999999999999665 23466678899999999999975 59999999999999
Q ss_pred EeCCCCceeeee--cCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCC--ceEEEEEcCCCC-EEE
Q 005096 213 WQNNMNNVKANK--SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKSVDWHPTKS-LLV 286 (715)
Q Consensus 213 wd~~~~~~~~~~--~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~--~I~si~~spdg~-~L~ 286 (715)
||++.-+.-... ....+.|.+|+|+..- ..|++++.+|++.|||++..+.+..+..+.. .+..|+|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875544333 2356789999998744 5688899999999999998888877765554 477999999875 566
Q ss_pred EEeCCC---cEEEEECCC-CceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 005096 287 SGGKDS---LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (715)
Q Consensus 287 sgs~Dg---~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~ 361 (715)
++++|. .|.+||+|. ...++++++|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+......+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666554 599999985 45677788999999999999955 8999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|++.+..+|++++-||.|.||.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999886543
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.1e-21 Score=193.66 Aligned_cols=243 Identities=21% Similarity=0.388 Sum_probs=190.7
Q ss_pred eccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----------------CceeeeecCCCCCeEEEEEecCC-CEE
Q 005096 183 QAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----------------NNVKANKSAHKESVRDLSFCRTD-LKF 243 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~----------------~~~~~~~~~h~~~I~~l~~spd~-~~L 243 (715)
..|.+.|+.+..++-+ .+.++=+..|.|+||++.. .+.+.++.+|...=..|+||+-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566777777666543 4556667889999999632 23456677888888999999832 347
Q ss_pred EEEECCCcEEEEECCCCeeE---EEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceE
Q 005096 244 CSCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVL 316 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~---~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~ 316 (715)
++|.--+.|++|...++.-. ..+.+|...|..|+|+|.. ..|++|+.|++|+|||+|++ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 78877888999998775432 3466799999999999965 48999999999999999987 3343 378999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc----
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP---- 389 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t---~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~---- 389 (715)
.|+|+.+..+||+|+.||+++|||+|. ++.+..|+-|...|++|.|+|.....|++++.|..|.|||+.....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999999999999986 4568899999999999999998889999999999999999864432
Q ss_pred -----------eEEEeecc--CCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 390 -----------QVEIHNVH--DNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 390 -----------~~~~~~~h--~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
.-.++..| ...|..+.|++. -.+|++.+.||.-.+.-
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 01122234 346888999986 46788888888654443
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=4.6e-21 Score=204.80 Aligned_cols=272 Identities=16% Similarity=0.332 Sum_probs=222.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|+.++|-|||..|+.+..| .+.|||..++.....+++|.+.|+|++|+.||+++++|+.|..|.||+-.....+. .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 89999999999999888766 59999999999999999999999999999999999999999999999865444333 3
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.|.+.|.|+.|+|-...|++|+-+ ..-+|..+.... ...+ ....|.+++|..||.+|+.|-.||+|.|-+.. ++..
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 689999999999999999998865 477887654322 2221 34568899999999999999999999998654 4443
Q ss_pred EEec---cCCCceEEEEEcCCC-----CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 306 CSFH---GHKNMVLCVKWNQNG-----NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 306 ~~~~---~~~~~I~sl~~spdg-----~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
..+. +.++.|.+|+|+++. ..+++.....++.+|.+. |+.+..-+.-.-.-.|+.+.+ ++.+++.|+.|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDK 244 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCC
Confidence 3443 467889999999953 578888888999999886 777766555666678889988 899999999999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.+.+|.-+ + .........+..||.+...|++.+++.|+.||+|..|++-
T Consensus 245 ~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 245 QLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999642 2 2223333467799999999999999999999999999864
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.6e-21 Score=197.79 Aligned_cols=245 Identities=15% Similarity=0.306 Sum_probs=205.4
Q ss_pred ecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEE--EeccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMI--LQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~--l~~h~-~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
++.--+.+|.+++|.++|. .+++++....++.||+.+.+..+. ..+++ ..+.....++++++|++.+..|.|.|..
T Consensus 252 S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 252 SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence 3444577899999999999 888999999999999998776544 33333 4577888999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-ceEEEEEcCCCCEEEEEeCCCc
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-~I~si~~spdg~~L~sgs~Dg~ 293 (715)
..+++.+..++ ..+.|.+++|+.|++.|++++.+|.|++||++...+++.+...++ .-++++.+.++.+||+|+..|.
T Consensus 332 akT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 332 AKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 99998887764 467899999999999999999999999999999988888874432 2357888899999999999999
Q ss_pred EEEEECCC------CceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecC---CCCeEEEEE
Q 005096 294 VKLWDAKS------GRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGH---RKDVTALAW 362 (715)
Q Consensus 294 I~iwDl~s------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h---~~~V~~l~~ 362 (715)
|.|||.++ .+.+..+......|+++.|++|..+||.++ .+..+++..+-+......+... -+.|+|++|
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF 490 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe
Confidence 99999654 345666666677899999999999999887 4568999988877776666543 356899999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+| ++.++|.|..+|+|.+|.+.
T Consensus 491 SP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 491 SP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cC-CCceEEeecCCCceeeEeec
Confidence 99 89999999999999999874
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=184.00 Aligned_cols=282 Identities=19% Similarity=0.345 Sum_probs=216.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------ceEEEEe-ccCCCEEEEEEc-------CCCCEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQ-AHDHAIRSMVWS-------HNDNWMV 202 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------------~~~~~l~-~h~~~V~~l~~s-------pdg~~L~ 202 (715)
-..-...+.|+|||..|++-+.|..+.+|++-.. +...+++ .....|...+|- |+.++++
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 3444667899999999999999999999985421 1111222 123567787875 4678899
Q ss_pred EEeCCCcEEEEeCCCCceeeeecC--CCC---CeEEEEEecCCCEEEEEECCCcEEEEEC-CCCeeEE---Ee----ccc
Q 005096 203 SGDDGGAIKYWQNNMNNVKANKSA--HKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDF-ARCQEER---SL----TGH 269 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~~~~~~~--h~~---~I~~l~~spd~~~Las~s~Dg~V~iwdl-~~~~~~~---~l----~~~ 269 (715)
+.+.+.-|++||.-++++...+.. |.+ ...+|+|++||..|++|. ..+|+|||+ +.+.... ++ .+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999999988877643 333 456899999999998765 568999999 3333221 11 123
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe-E
Q 005096 270 GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK-E 346 (715)
Q Consensus 270 ~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~-~ 346 (715)
.+.|.+++|+|... .+++++....+-||.-...+.+..+-+|.+.|+.+.|.++|+.|++|+ .|-.|..||+|..+ .
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 56789999999654 899999999999998888899999999999999999999999999988 46789999999644 4
Q ss_pred EEEeecCCC-CeEEEEE--ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEE
Q 005096 347 LESFRGHRK-DVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423 (715)
Q Consensus 347 ~~~~~~h~~-~V~~l~~--sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~ 423 (715)
+..+..|.. .-..|.| .+ .+++|++|+.||.|++||++.-.........++..|+.++++|.-.+++|++.. +
T Consensus 287 v~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r 362 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---R 362 (406)
T ss_pred hhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---e
Confidence 555665555 3333444 45 788999999999999999988666566666789999999999998888888754 3
Q ss_pred EEecCC
Q 005096 424 FWCRNR 429 (715)
Q Consensus 424 iWdl~~ 429 (715)
+|...+
T Consensus 363 ~f~~~~ 368 (406)
T KOG2919|consen 363 IFKYPK 368 (406)
T ss_pred eecCCC
Confidence 444433
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=5.5e-21 Score=204.49 Aligned_cols=250 Identities=16% Similarity=0.287 Sum_probs=195.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE--EeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~--l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~ 215 (715)
....|...|..+.|.+....|++++.|.++++||+++.+++.. +.+|.+.|.+++|.+++ ..|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3457999999999999778899999999999999999888776 89999999999999976 56789999999999996
Q ss_pred CCCce---------------------------eeeecCCCCCeEE---EEEecCCCEEEEEEC-CCcEEEEECCCCeeEE
Q 005096 216 NMNNV---------------------------KANKSAHKESVRD---LSFCRTDLKFCSCSD-DTTVKVWDFARCQEER 264 (715)
Q Consensus 216 ~~~~~---------------------------~~~~~~h~~~I~~---l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~ 264 (715)
..... +.....+...|.. +.+..|+..||+++. |+.|+||||++.....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 43220 0111233444555 566678899999888 9999999997654432
Q ss_pred Ee--------ccc---CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCC--ceEEEEEcCCCCEEEE
Q 005096 265 SL--------TGH---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVLT 329 (715)
Q Consensus 265 ~l--------~~~---~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~--~I~sl~~spdg~~Las 329 (715)
.. ..+ ...+.++..+..|.+|++.+.|+.|++||+.+.. .+..+.++.. ....-..++|+.+|++
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 21 122 3457888888889999999999999999998643 3333433221 1223346889999999
Q ss_pred EECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 330 ASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|+.|...++|.+.+.+. ...+.+|...|++++|.+....-++++++|.+++||++..+.
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 99999999999987554 566789999999999999777888999999999999996543
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.9e-21 Score=198.39 Aligned_cols=244 Identities=18% Similarity=0.288 Sum_probs=193.2
Q ss_pred EEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCce---EE------------------EEeccCCCEEEEEEcCC-C
Q 005096 148 NRVLWTP-------TGRRLITGSQSGEFTLWNGQSFNF---EM------------------ILQAHDHAIRSMVWSHN-D 198 (715)
Q Consensus 148 ~~l~~sp-------dg~~Latgs~dg~I~Iwd~~~~~~---~~------------------~l~~h~~~V~~l~~spd-g 198 (715)
.|++|.. .|+++|.|+.|..|.|||+.-... .. .-.+|+..|.+++|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 368999999999999999652111 00 12358888889999876 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~ 277 (715)
+.||+|+.|.+|++||+++++...++..|...|.++.|++. ..+|++|+.|++|.+.|++........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 67899999999999999999999999999999999999985 47799999999999999985333332223557899999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--EEEeec
Q 005096 278 WHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKE--LESFRG 352 (715)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~--~~~~~~ 352 (715)
|++.. ..++++..||+|+-+|+|+. +++.+++.|...|.+|+++.. -.+|++++.|+.|++|++..... +..-.-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 99865 47778889999999999974 899999999999999999984 46788999999999999874332 222222
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~ 391 (715)
.-+...|.++.++...+++.|+..+.++|||+.+.....
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 223477888888777889999999999999997765443
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1e-19 Score=180.31 Aligned_cols=240 Identities=16% Similarity=0.275 Sum_probs=187.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
..|+.|++.|.+||+|+.||.|.|||+.+......+..|...|++++|++||++|++++.|..|.+||+..+..++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7799999999999999999999999999999989999999999999999999999999999999999999999888876
Q ss_pred cCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 269 HGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 269 ~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
....|+.+.|+|... .+++.-.+..-.+.++...+....-.. .+....+..|.+.|++|++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999998554 333333334345555554322111111 112234456889999999999999999999999
Q ss_pred CeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEee-------ccCCCEEEEEEcCCCCE
Q 005096 344 MKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHN-------VHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 344 ~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~-------~h~~~V~~l~~spdg~~ 412 (715)
.+++..++... ..|..|.++- .++.|+.-+.|..|+.|+++.-... ..... ..+..-.+++|+.||.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 99999998776 7899999988 8999999999999999988631111 01110 01223467889999999
Q ss_pred EEEEEC-CCeEEEEecCCC
Q 005096 413 LCSGSN-DHTTKFWCRNRP 430 (715)
Q Consensus 413 L~sgs~-Dg~I~iWdl~~~ 430 (715)
++.++. -..++||..+..
T Consensus 264 v~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccccceeEEEEecCCc
Confidence 988774 568999987543
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=2.8e-20 Score=192.54 Aligned_cols=258 Identities=20% Similarity=0.291 Sum_probs=201.8
Q ss_pred EeCCCCceEEEEeccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----CceeeeecCCCCCeEEEEEecCC-CEE
Q 005096 171 WNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRTD-LKF 243 (715)
Q Consensus 171 wd~~~~~~~~~l~~h~~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~I~~l~~spd~-~~L 243 (715)
+|+.+......++.+.+.|++++|+|.. +++++|+..|.|-+||+.+ ..-+..+..|...|.+|.|+|.+ ..|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4455555666677789999999999975 5788999999999999953 23455567899999999999954 679
Q ss_pred EEEECCCcEEEEECCCCeeEEEecc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEeccCCCceEEEEE
Q 005096 244 CSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKW 320 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~~~l~~--~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~-~~~~~~~~~~I~sl~~ 320 (715)
++.+.||+|++-|+++......+.. ....+.++.|+.+...++++..=|.+.+||+++++. ...+..|+..|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999987654433333 555678889998888888888878999999998654 6667778889999999
Q ss_pred cCC-CCEEEEEECCCeEEEEECCCCeE----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC----CCCceE
Q 005096 321 NQN-GNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQV 391 (715)
Q Consensus 321 spd-g~~Lasgs~dg~I~iwDl~t~~~----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~----~~~~~~ 391 (715)
+|- ..+||+++.|++++|||+|.... +.....|...|.+..|||.++. |+|.+.|..|+|||.. ......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccc
Confidence 994 46788999999999999986543 2344569999999999997777 8899999999999984 222333
Q ss_pred EEeeccCC----CEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 392 EIHNVHDN----TVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 392 ~~~~~h~~----~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+...+.. ......|.|+..+|++|-.-..|-|+|-+.
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 33322211 244568999999999999988999997643
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=2.4e-21 Score=211.89 Aligned_cols=286 Identities=18% Similarity=0.268 Sum_probs=236.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.|.+|...|+|+.|...|.+|++|+.|..|+||..++..++..+.+|.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 35688999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-----cccCCceEEEEEcCCCCEEEEEeCC
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-----~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.+..+..+.+|.+.|++|+|+|-. +.+.||++++||.+ ....... ......+.++.|..++..+++++.|
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 999999999999999999999854 77889999999987 1111111 1234567788888888899999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
+.-..|.+.... .+...+.-+.++.|- .+.+++-.+-.+++|++.++..++.+.+|...+..+.++|.+..+.
T Consensus 338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 999888765311 111111112222222 4566677788999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
.+++.||.+.|||+-.+........+ .+.+.+.+|+.||..++....-|.+.|......+...
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 99999999999999888777666655 5577788999999999999889999999875544433
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.2e-20 Score=196.25 Aligned_cols=252 Identities=17% Similarity=0.312 Sum_probs=208.5
Q ss_pred eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE--EEEEECCCcEEEE
Q 005096 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK--FCSCSDDTTVKVW 255 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~--Las~s~Dg~V~iw 255 (715)
+...+.+|++.|.+|...+.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|++.... ||++. +.++.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 455678999999999999999999999999999999999999988874 4668999999997643 44333 3334444
Q ss_pred ECCCC-------------------------------------eeEEEecccCCceEEEEEcCCCCEEEEEeCC---CcEE
Q 005096 256 DFARC-------------------------------------QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVK 295 (715)
Q Consensus 256 dl~~~-------------------------------------~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---g~I~ 295 (715)
+..-+ .-++....|...|+.|.|+.+|.||++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32110 0022333577889999999999999998764 4689
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
|+++...+...-|....+.|.++.|+|...+|++++ ...|+|||+...+.++.+......|.++++++ ++.-|+.++.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence 999988777777776788899999999999999887 56899999999888888888889999999999 7888889999
Q ss_pred CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
|+.++.||++......+.+..|...|++++|+..-.++++|+.||++.||--.-..+.
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 9999999999988888888889999999999999999999999999999865444443
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.7e-20 Score=183.79 Aligned_cols=271 Identities=16% Similarity=0.249 Sum_probs=201.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeee--cCCC-CCe
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANK--SAHK-ESV 231 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~~--~~h~-~~I 231 (715)
..+|++.++|.|+|||..+++.+..++++...++.+.|..+ ...+.+|+.||+|++||+++......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999873 578899999999999999886544433 2333 456
Q ss_pred EEEEEecCCCEEEEEEC----CCcEEEEECCCCee-EEE-ecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce
Q 005096 232 RDLSFCRTDLKFCSCSD----DTTVKVWDFARCQE-ERS-LTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE 304 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~----Dg~V~iwdl~~~~~-~~~-l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~ 304 (715)
.+++...+++.+++|+. |-.|.+||++..+. +.. ...|.+.|++|.|+|.. ++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667777887754 67899999987766 444 35799999999999965 6999999999999999985432
Q ss_pred ---eEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCC----------eEEE-EEccCCCCE
Q 005096 305 ---LCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKD----------VTAL-AWHPFHEEY 369 (715)
Q Consensus 305 ---~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~----------V~~l-~~sp~~~~~ 369 (715)
+...-.+...|.++.|..++ +.|.+-+......+|+++.+.+...+....-. -+-| ..++.+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 22222367789999999876 45888889999999999988765544322100 0111 122334455
Q ss_pred EEEEeC-CCcEEEEEcC------CCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 370 FVSGSL-DGSIFHWLVG------HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 370 l~sgs~-DG~I~iwd~~------~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++.++. -+...++-+. .......+..+|...|.++.|...+.+++||++||.|.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 554444 5555555433 122333344457888999999988999999999999999986
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4e-19 Score=180.07 Aligned_cols=294 Identities=14% Similarity=0.233 Sum_probs=225.2
Q ss_pred eeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceEEEEe-ccCCCEEEEEEcCCCCEEEEEe
Q 005096 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQ-AHDHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 133 ~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------~~~~~l~-~h~~~V~~l~~spdg~~L~tgs 205 (715)
..++.+.+.+|.+.|++|.|+.++++|++|+.|..++||+++.. +.+.... .|...|.|++|....++|++|.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 34566788999999999999999999999999999999997642 3333333 3558899999999899999999
Q ss_pred CCCcEEEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEEEcC
Q 005096 206 DGGAIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~~sp 280 (715)
.+++|.+.|+++.+.+..+. ...+.|..+..+|.++.|++.+.++.|.+||++... ....+........++.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999999988766653 233589999999999999999999999999997654 1223334556678899999
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCc-eeEEe---ccC---CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEee
Q 005096 281 TK-SLLVSGGKDSLVKLWDAKSGR-ELCSF---HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFR 351 (715)
Q Consensus 281 dg-~~L~sgs~Dg~I~iwDl~s~~-~~~~~---~~~---~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~-~~~~ 351 (715)
.. .+|++.+..+-+.+||++... .+... ++. ...-.++.|+++|+.|++.-....-.+||+-+.++. ..+.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 65 477888888899999998532 22211 111 122356789999999988877777788898765443 2222
Q ss_pred c------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC----------------------CceEEEeeccCCCEEE
Q 005096 352 G------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE----------------------TPQVEIHNVHDNTVWD 403 (715)
Q Consensus 352 ~------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~----------------------~~~~~~~~~h~~~V~~ 403 (715)
. ....+.+++|. ++..|++|+.+-.|++|.+-.. ...+.++.+|.+.++.
T Consensus 285 ~N~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred CCCCcceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 1 12346677776 5566999999999999987321 1224467789999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+.|++...+|++.+..+.++||.--
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeecCCcceEeccchhhheeccccc
Confidence 9999999999999999999999754
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-18 Score=165.78 Aligned_cols=270 Identities=15% Similarity=0.243 Sum_probs=201.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..|.+-+|+|.+++|++|..+|.|.+..+++ ...+....+|++.|+.++|. +.+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3466778999999999999999999998654 22344568999999999998 45677665 49999997
Q ss_pred CCCCce----eeee----c-----CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC
Q 005096 215 NNMNNV----KANK----S-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 215 ~~~~~~----~~~~----~-----~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd 281 (715)
.+.... +..+ . ..--.|+++.+.|..+.|++++.|+.++.||+++++..+.+++|.+-|.+++--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 654322 1100 1 11236889999988888888889999999999999999999999999999998656
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccC----------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGH----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~----------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
...+++|++||++||||+++++++..+... ..+|-+++.+ .++|++|+ ...+.+|.++..++...|.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe
Confidence 667999999999999999999998877532 3456677654 66888775 5689999999988887776
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEEe
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWC 426 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iWd 426 (715)
....+..+.| .++.+++++..+.|.-|.++.... ..........++..|+..- ++|..++....+.|+.
T Consensus 245 -ipa~v~~v~F---~~d~vl~~G~g~~v~~~~l~Gvl~--a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 -IPARVHLVDF---VDDCVLIGGEGNHVQSYTLNGVLQ--ANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred -cccceeEeee---ecceEEEeccccceeeeeeccEEE--EeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 4556777777 467788888888899998753221 2222223345566665443 4555566667777663
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=7.1e-19 Score=175.03 Aligned_cols=243 Identities=21% Similarity=0.395 Sum_probs=187.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-------------eeeeecCCCCCeEEEEEe-------cCCCEEEEEE
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-------------VKANKSAHKESVRDLSFC-------RTDLKFCSCS 247 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-------------~~~~~~~h~~~I~~l~~s-------pd~~~Las~s 247 (715)
-...+.|+|||..|++-+.|..+.+|++.... ...........|.+.+|- |+.+++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34578999999999999999999999864211 111112234567777775 5678899999
Q ss_pred CCCcEEEEECCCCeeEEEecc--cCC---ceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEe-------ccCCCc
Q 005096 248 DDTTVKVWDFARCQEERSLTG--HGW---DVKSVDWHPTKSLLVSGGKDSLVKLWDA-KSGRELCSF-------HGHKNM 314 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~~~~l~~--~~~---~I~si~~spdg~~L~sgs~Dg~I~iwDl-~s~~~~~~~-------~~~~~~ 314 (715)
.|.-|++||.-+++....+.. |.. ...+++|++||..|++|. ..+|++||+ |.|+....+ .+..+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999988777654 222 356899999999998775 588999999 555432211 123667
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEE
Q 005096 315 VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 315 I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~ 392 (715)
|.|++|+| +.+.+++++....+-||.-...+.+..+-+|.+.|+.+.|.+ +++.|++|. .|-.|..||++.....+.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhh
Confidence 99999999 566899999999999999999999999999999999999999 555555555 577899999988776555
Q ss_pred EeeccCC-CEEEE--EEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 393 IHNVHDN-TVWDL--AWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 393 ~~~~h~~-~V~~l--~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.+..|.+ .-..| ...+++++|++|+.||.|++||++..++
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 5555544 33334 4567799999999999999999988666
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=4.1e-19 Score=189.12 Aligned_cols=180 Identities=16% Similarity=0.272 Sum_probs=140.9
Q ss_pred CCCcEEEEECCCCeeE-----EEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEeccCCCc
Q 005096 248 DDTTVKVWDFARCQEE-----RSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSG-------RELCSFHGHKNM 314 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~~-----~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~-------~~~~~~~~~~~~ 314 (715)
..|.|.||+++.-..+ -.+. .+..|+++.|+| |...|+++++||.|+||.+..+ .....++.|...
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 3456777777542221 1111 345799999999 5678999999999999988653 234567789999
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 315 VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 315 I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
|++|.|+| -.+.|++++.|-+|+|||+++++....+.+|.+.|.+++|++ +++.+++.+.||+|++|+-++....+..
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCcccc
Confidence 99999999 567899999999999999999999999999999999999999 8999999999999999998877654443
Q ss_pred eec-cCCCEEEEEEcCCCCEEEEEECCC----eEEEEecCC
Q 005096 394 HNV-HDNTVWDLAWHPIGYLLCSGSNDH----TTKFWCRNR 429 (715)
Q Consensus 394 ~~~-h~~~V~~l~~spdg~~L~sgs~Dg----~I~iWdl~~ 429 (715)
-.+ -...--.|.|.-||++|++.+-|. .|.+|+-..
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 222 123345678888999988877654 477776543
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=8e-19 Score=172.23 Aligned_cols=263 Identities=18% Similarity=0.294 Sum_probs=197.7
Q ss_pred CCeEEEEeCCCCc---eEEEEeccCCCEEEEEEcCCCC-EEEEEeCC-------CcEEEEeCCCCc---------eeeee
Q 005096 165 SGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDN-WMVSGDDG-------GAIKYWQNNMNN---------VKANK 224 (715)
Q Consensus 165 dg~I~Iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~-~L~tgs~d-------g~I~iwd~~~~~---------~~~~~ 224 (715)
|+.|.+.+++... ..+.|..|.+.|..|+-+|-+. +|+|+..+ -.+.||.+.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5667776655432 2345666788999999998654 55555432 236799875432 22222
Q ss_pred c-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEec-----ccCCceEEEEEcC--CCCEEEEEeCCCcEE
Q 005096 225 S-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWDVKSVDWHP--TKSLLVSGGKDSLVK 295 (715)
Q Consensus 225 ~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~-----~~~~~I~si~~sp--dg~~L~sgs~Dg~I~ 295 (715)
. .+-+.|.|+.|.|++..+++.. |..|.+|++.+... +..+. .+....++-+|+| +++.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 2 3445899999999999998876 77899999977665 33322 2455678889998 67777665 579999
Q ss_pred EEECCCCceeEEec-cCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 296 iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.||+|+.++...++ .|...|..+.|+|+.. +|++|+.||.|+|||.|+- ..+.++..|...|.++.|++..+.+|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988777664 6778899999999765 5778899999999999864 4688899999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCC----------------------------ceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEE
Q 005096 373 GSLDGSIFHWLVGHET----------------------------PQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTK 423 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~----------------------------~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~ 423 (715)
++.|..|.+|....-. ..+..+..|++.|.+++|+.- --+|++-+.||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 9999999999653210 112345568999999999875 56788999999999
Q ss_pred EEecCC
Q 005096 424 FWCRNR 429 (715)
Q Consensus 424 iWdl~~ 429 (715)
|=++.+
T Consensus 357 Is~V~r 362 (370)
T KOG1007|consen 357 ISSVPR 362 (370)
T ss_pred eecCCh
Confidence 877643
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=3.4e-19 Score=174.84 Aligned_cols=247 Identities=22% Similarity=0.401 Sum_probs=191.9
Q ss_pred EEecCCCCccEEEEEEcCCCCE-EEEEeCC-------CeEEEEeCCC---------CceEEEEe-ccCCCEEEEEEcCCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRR-LITGSQS-------GEFTLWNGQS---------FNFEMILQ-AHDHAIRSMVWSHND 198 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~-Latgs~d-------g~I~Iwd~~~---------~~~~~~l~-~h~~~V~~l~~spdg 198 (715)
.+.+..|.+.|..|+-+|.... |+++..+ ..+.||.+.. .+.+..+. .+-+.|.||.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 3457788999999999996554 5555432 2478998653 23344444 455789999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-eeee-----cCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEec-cc
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNV-KANK-----SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT-GH 269 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~-~~~~-----~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~ 269 (715)
..|++-. |..|.+|+++.... ...+ ..+....++-+|++ |++.+++ ..|+++..||+++.++...+. .|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhh
Confidence 9988765 78999999987654 2222 12455678888988 5666655 458899999999887766664 68
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC--
Q 005096 270 GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-- 344 (715)
Q Consensus 270 ~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~-- 344 (715)
...|.++.|+|+.. +|++|++||.|+|||+|. ...+.++.+|..+|.++.|++ ...+|++++.|..|.+|...+-
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 88899999999876 788999999999999986 456888999999999999999 4568889999999999965321
Q ss_pred ---------------------------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 345 ---------------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 345 ---------------------------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
..+.++..|+..|++++|+..+..+|++-++||++.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12456778999999999999888899999999999887764
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=174.99 Aligned_cols=282 Identities=18% Similarity=0.231 Sum_probs=205.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.|+.|.+.|+|+.|..+++ |.+|...|.|++|++.+.+....++ .+...|+.+.-.++ +.|.+-+.|..+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4569999999999998885 9999999999999999988888888 56778998888877 5678889999999999987
Q ss_pred CceeeeecCCCCCeEEEEEecC-----CC----EEEEEECCC-cEEEEECCCCeeEEEe----cccCCceEEEEEcCC-C
Q 005096 218 NNVKANKSAHKESVRDLSFCRT-----DL----KFCSCSDDT-TVKVWDFARCQEERSL----TGHGWDVKSVDWHPT-K 282 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd-----~~----~Las~s~Dg-~V~iwdl~~~~~~~~l----~~~~~~I~si~~spd-g 282 (715)
...+.. |.-.++++.|++. .+ .++.-++.. .+.+-|..+...+... ....+.+.|..|.-+ +
T Consensus 87 s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 87 SAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 554433 3334455555432 11 111111100 1222222221112211 123456777775443 2
Q ss_pred C--EEEEEeCCCcEEEEECCCCce----------eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--e--E
Q 005096 283 S--LLVSGGKDSLVKLWDAKSGRE----------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--K--E 346 (715)
Q Consensus 283 ~--~L~sgs~Dg~I~iwDl~s~~~----------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--~--~ 346 (715)
+ +|++|.++|.|.+||+.++.. +.....|...|.++.|.+..+.=++|+.+..+..|++... . .
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 667888999999999998733 3334568889999999876666677888888889887632 2 2
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
-.+++..+-.|..+.+-+ +++++|+++.|++|+||..++...+. ++..|.+.|++++|+++..++|+++.|+.|.+|+
T Consensus 244 ~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLA-VLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLA-VLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchh-hhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 233444556788889988 89999999999999999998877654 4556999999999999999999999999999998
Q ss_pred c
Q 005096 427 R 427 (715)
Q Consensus 427 l 427 (715)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=2e-18 Score=169.65 Aligned_cols=276 Identities=16% Similarity=0.291 Sum_probs=201.5
Q ss_pred cEEEEEEcC---CCCEEEEEeC----CCeEEEEeCC--CCceEEEE-eccCCCEEEEEEcCCCC-----EEEEEeCCCcE
Q 005096 146 SINRVLWTP---TGRRLITGSQ----SGEFTLWNGQ--SFNFEMIL-QAHDHAIRSMVWSHNDN-----WMVSGDDGGAI 210 (715)
Q Consensus 146 ~I~~l~~sp---dg~~Latgs~----dg~I~Iwd~~--~~~~~~~l-~~h~~~V~~l~~spdg~-----~L~tgs~dg~I 210 (715)
.+.++.|+. ...+||.|+. .+.|.|..++ +++.+..- ..|...++.+.|.|+.+ +|||++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 467777773 2346777764 4566665443 34333222 35788999999999863 555544 579
Q ss_pred EEEeCCCCcee----ee-----ecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEE
Q 005096 211 KYWQNNMNNVK----AN-----KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVD 277 (715)
Q Consensus 211 ~iwd~~~~~~~----~~-----~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~ 277 (715)
++|.+...+.. .. ...+...++++.|+. |-++|.+++-|.++.|||++++. ....+.+|...|.+|+
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99988743211 11 123556889999987 45788999999999999998763 4667788999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceeEEe-c--cCCCceEEEEEcC-CCCEEEEEECC-CeEEEEECCC-CeEEEEe
Q 005096 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF-H--GHKNMVLCVKWNQ-NGNWVLTASKD-QIIKLYDIRA-MKELESF 350 (715)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~-~--~~~~~I~sl~~sp-dg~~Lasgs~d-g~I~iwDl~t-~~~~~~~ 350 (715)
|..++ +.|++++.||.||+||+|..+.-..+ + ........++|+. |-+++|+-..| ..|.|.|+|. ...+.++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99865 48899999999999999976543333 2 2245688899998 55788876544 5799999986 5668899
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-----eEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----QVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKF 424 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~i 424 (715)
+.|...|+.|+|.|.....|+++++|..+.|||+..-.. .+... ...+.|+.|.|++. ...|+.+. ++++.|
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999999999998899999999999999999965432 11112 24668999999965 56777766 444444
Q ss_pred E
Q 005096 425 W 425 (715)
Q Consensus 425 W 425 (715)
-
T Consensus 362 L 362 (364)
T KOG0290|consen 362 L 362 (364)
T ss_pred E
Confidence 3
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=8.7e-20 Score=193.46 Aligned_cols=252 Identities=25% Similarity=0.359 Sum_probs=199.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~--------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
++..|.+.|++++|.+....|++++.||+|++|++.+ .+.+.+|.+|.+.|.|+++..++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 7888999999999999999999999999999999832 34577899999999999999999999999999999
Q ss_pred EEEeCCC----------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc--CCceEEEEE
Q 005096 211 KYWQNNM----------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH--GWDVKSVDW 278 (715)
Q Consensus 211 ~iwd~~~----------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~--~~~I~si~~ 278 (715)
+.|++.. ..+...+.+|.+.|+.++++.....|++|+.||+|++|+...... .++... .+--.++++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 9996432 134556789999999999999999999999999999999866554 333322 223345555
Q ss_pred cCCC-CEEEEEeCCCcEEEEECCCCceeEEecc-------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 279 HPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 279 spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
.... ...++...-+.-.++|++....+..+.. ....+.-+.+++...+.+++..|+.|+++|..+++.+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 4332 2223333333334445554444444431 1235778889999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..|...++++++.+ ++-+|++++.|+.|++|.+....+...
T Consensus 528 ~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeccceecceeecC-CCceEEeecCCceeehhhccchheeec
Confidence 99999999999999 999999999999999999876654433
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.9e-18 Score=193.61 Aligned_cols=289 Identities=17% Similarity=0.306 Sum_probs=216.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC---CCEEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD---HAIRSMVWSH--NDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~---~~V~~l~~sp--dg~~L~tgs~dg~I~iwd 214 (715)
..+....-..+.|++-...|+++...-.|+|||.+.++....|..+. ..|+.+++.. |..+|++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 34445567788999999999999988899999999998887776543 5689998865 346889999999999997
Q ss_pred CCC-----CceeeeecC-------CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcC-
Q 005096 215 NNM-----NNVKANKSA-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHP- 280 (715)
Q Consensus 215 ~~~-----~~~~~~~~~-------h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~sp- 280 (715)
-.. .+++..+.. ..+.-.-++|-....+|+++++-..|+|||.+...++..+. +....|+++.-+-
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 322 233332221 11122445676666777777778899999998877776664 3445577766544
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCc--eEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEE--EEeec
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNM--VLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKEL--ESFRG 352 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~--I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~~~~--~~~~~ 352 (715)
.|+.|++|..||.|++||.+.. ..+..++.|... |..+.+.+.|- .|++|+.||.|++||+|..... ..+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 3689999999999999998853 346677788887 99999998664 4999999999999999974222 22222
Q ss_pred C---CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE-----EeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 353 H---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-----IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 353 h---~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~-----~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
| .+.++++.++. ...+||+|+. +.|+||++........ +.....+.+.|++|+|..-+||+|+.|.+|.|
T Consensus 1300 ~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 2 23599999998 8999999998 8999999865433222 12223457899999999999999999999999
Q ss_pred EecCCC
Q 005096 425 WCRNRP 430 (715)
Q Consensus 425 Wdl~~~ 430 (715)
|...+.
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987654
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.1e-18 Score=187.08 Aligned_cols=287 Identities=17% Similarity=0.275 Sum_probs=219.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.|...++|.++|++++++|++..||.|.||.-.. ......+.-|...|.+++|+.+|.+|++|+.+|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666799999999999999999999999996332 234556777899999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCCEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~~L~ 286 (715)
++ ...+......|..+.+++|+.+.+....|+.|.+....+.+...++.+. .+-.+.++++|.-+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 88 6666778899999999999999999999999999988666555544332 33467788999777888
Q ss_pred EEeCCCcEEEEECCCCceeEEecc-----------CCCceEEEEEcCCCCEEEEEE--------CCC--eEEEEECCCCe
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHG-----------HKNMVLCVKWNQNGNWVLTAS--------KDQ--IIKLYDIRAMK 345 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~-----------~~~~I~sl~~spdg~~Lasgs--------~dg--~I~iwDl~t~~ 345 (715)
..+..+.|.+||+-+.+.+..+.. +...+++++.+.+|++++|.- .|| .+++|-.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 889999999999988776665531 122467788888899999864 233 57788654332
Q ss_pred ----EEEE-eecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCCC---------ceEEEeeccCCCEEEEEEcCCC
Q 005096 346 ----ELES-FRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHET---------PQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 346 ----~~~~-~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~~---------~~~~~~~~h~~~V~~l~~spdg 410 (715)
...+ ...|+..+...++...... .+++++.||.++||.+.... .+..+-..|...+++++|+.||
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG 521 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG 521 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC
Confidence 2222 2356666655555443333 89999999999999883322 2222333478899999999999
Q ss_pred CEEEEEECCCeEEEEecCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~ 430 (715)
. |++++.|++|.+||..+.
T Consensus 522 s-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 522 S-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred c-EEEEecCCEEEEecCCCh
Confidence 6 555667899999999773
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=4.8e-19 Score=176.68 Aligned_cols=241 Identities=14% Similarity=0.245 Sum_probs=191.7
Q ss_pred CCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~ 216 (715)
.|......++|+-| ..+||+|+.-|.|+|.|+.++++...+.+|...|+.|.+.|+. ++|++++.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47778888898765 3478999999999999999999999999999999999999976 788999999999999999
Q ss_pred CCceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE----------------------------E
Q 005096 217 MNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER----------------------------S 265 (715)
Q Consensus 217 ~~~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~----------------------------~ 265 (715)
+..++..+ .+|.+.|.++.|+.++.+|++++.|.+|++|++...+... +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99888876 6799999999999999999999999999999997321110 1
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCc-------------eeEEeccCCCceEEEE--EcCCCCEEEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGR-------------ELCSFHGHKNMVLCVK--WNQNGNWVLT 329 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~-------------~~~~~~~~~~~I~sl~--~spdg~~Las 329 (715)
-..|.+.|-|+.|- |+++++-+.++.|..|..- -++ .+.++.-....|+-|. |.+-.++||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12355566666676 7889998889999999761 111 1233333344455554 4556789999
Q ss_pred EECCCeEEEEECCCCeEE--EEe--ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 330 ASKDQIIKLYDIRAMKEL--ESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~--~~~--~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
|...|.|.+||++..+.. .++ ......|...+|+. ++.+|+..++|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999999999977652 122 23346789999998 89999999999999999863
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=4.6e-17 Score=175.13 Aligned_cols=269 Identities=10% Similarity=0.104 Sum_probs=183.2
Q ss_pred EEEeCCCeEEEEeCCC-Cc--eEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Cceeee-ecCCCCCeEE
Q 005096 160 ITGSQSGEFTLWNGQS-FN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM-NNVKAN-KSAHKESVRD 233 (715)
Q Consensus 160 atgs~dg~I~Iwd~~~-~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~-~~~~~~-~~~h~~~I~~ 233 (715)
++...++.|++||+.+ ++ .+..+. +.+....+++++++++|++++ .++.|.+|+++. +.+... ..........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 33 334443 346678899999999987654 578899999873 332211 1123345678
Q ss_pred EEEecCCCEEEEEEC-CCcEEEEECCCCe----eEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEE
Q 005096 234 LSFCRTDLKFCSCSD-DTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCS 307 (715)
Q Consensus 234 l~~spd~~~Las~s~-Dg~V~iwdl~~~~----~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~~~~~ 307 (715)
+++++++++|++++. ++.|.+||+++.. .+..+. +.....++++++++++|++++ .++.|.+||+++...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999999888775 8899999996422 222222 233567889999999886555 568999999986433211
Q ss_pred -----ec-cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCC--C--eEEEEeecC------CCCeEEEEEccCCCCEE
Q 005096 308 -----FH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA--M--KELESFRGH------RKDVTALAWHPFHEEYF 370 (715)
Q Consensus 308 -----~~-~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t--~--~~~~~~~~h------~~~V~~l~~sp~~~~~l 370 (715)
.. ........++|++|+++|++++. ++.|.+||++. + +.+..+... ......+.++| ++++|
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 11 12344678999999999988876 89999999973 2 334443321 12234688999 67777
Q ss_pred EEEe-CCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEEC-CCeEEEEecCCCC
Q 005096 371 VSGS-LDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNRPG 431 (715)
Q Consensus 371 ~sgs-~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~~~ 431 (715)
+++. .++.|.+|+++......++... -....+.+.|++||++|+++.. +++|.+|+++...
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 6664 4789999999765433222211 1224568899999999988775 8999999987543
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=1e-16 Score=162.67 Aligned_cols=280 Identities=13% Similarity=0.197 Sum_probs=210.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCce
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNV 220 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~ 220 (715)
....|+.+.|+.|...|.+|+.|| .++|+.+..............|.-+-|+ ..++|..+.+ +.++++++..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 345678888999999999999998 7899887765533333333445555665 4566655544 4589999888877
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc---CCceEEEEEcCCCCEEEEEe--CCCcEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDVKSVDWHPTKSLLVSGG--KDSLVK 295 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~---~~~I~si~~spdg~~L~sgs--~Dg~I~ 295 (715)
+..+. ....|.++.++. ++|+++-.+. |+|||+++.+.++++... ...+.+++++.++.+|+.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 76653 466788888854 5677776664 999999999998887643 44567777777777888643 468899
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEeecCC--CCeEEEEEccCCCCEEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~-I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~~~l~s 372 (715)
|||+.+-+.+..+..|++.+.|++|+++|.+||++++.|+ ||||++.++..+.+|+... ..|.+|+|++ +..+|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEE
Confidence 9999999999999999999999999999999999999986 6999999999999998544 4588999999 8889999
Q ss_pred EeCCCcEEEEEcCCCCce------------------------------------EEEeecc-CC--CEEEEEEcCCCCEE
Q 005096 373 GSLDGSIFHWLVGHETPQ------------------------------------VEIHNVH-DN--TVWDLAWHPIGYLL 413 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~------------------------------------~~~~~~h-~~--~V~~l~~spdg~~L 413 (715)
.++.++|.||.++..... +...... .+ .+..+.-......+
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v 315 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRV 315 (391)
T ss_pred ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEE
Confidence 999999999988542100 0000000 11 22233323467889
Q ss_pred EEEECCCeEEEEecCCC
Q 005096 414 CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~ 430 (715)
.+++.||.++.|.++..
T Consensus 316 ~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 316 LVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEEcCCeEEEEEcCCC
Confidence 99999999999999764
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=182.01 Aligned_cols=263 Identities=13% Similarity=0.280 Sum_probs=199.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEE----c----CCCCEEEEEeCCCcEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW----S----HNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~----s----pdg~~L~tgs~dg~I~iw 213 (715)
.|...|.|+.|+.+...+.+++ |..+.+|+.-+.+....+...+..|....+ + ...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677778999998876555555 445555543332222222222222221111 0 123578889999999888
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
+- .+++...+..|.+.|.+-.|++||.-|+++++||.|++|. +++-...++.-....|.|++|.|+.+.++.+. .+.
T Consensus 91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 63 4566777789999999999999999999999999999998 44544455555677899999999988666654 366
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+.|=.+.-...+..++.|++-|.|+.|++..++|++|++|-..+|||-. |..+..-..|+..|++++|+| + ..++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeee
Confidence 8888888777888899999999999999999999999999999999975 888888888999999999999 4 555555
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
+.+ +++ +.....+.|..++|++||..++.|+..|.|.+
T Consensus 245 S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 533 333 33345778999999999999999999998766
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.6e-17 Score=184.80 Aligned_cols=264 Identities=19% Similarity=0.268 Sum_probs=200.6
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce--e----eeecCCCCCeEEEEEec
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNV--K----ANKSAHKESVRDLSFCR 238 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~--~----~~~~~h~~~I~~l~~sp 238 (715)
+.+.||+++..............|.|++|++. .++|+.|..+|.|.+||+..+.. . .....|...|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999887444444445788999999986 46778899999999999987654 2 22356889999999977
Q ss_pred CCCE--EEEEECCCcEEEEECCCCeeEE------Eec------ccCCceEEEEEcCCC-CEEEEEeCCCcEEEEEC---C
Q 005096 239 TDLK--FCSCSDDTTVKVWDFARCQEER------SLT------GHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDA---K 300 (715)
Q Consensus 239 d~~~--Las~s~Dg~V~iwdl~~~~~~~------~l~------~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl---~ 300 (715)
+..- |++++.||.|..|+++...... ... .....+++++|.+.. +.|++|+++|.|..-+- +
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5444 9999999999999986433210 111 123468899998744 57899999999877332 2
Q ss_pred CCc-----eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 301 SGR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 301 s~~-----~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
... ....+..|.+.|+++.++|-+..++..+.|.+|+||... ....+..+..+...|++++|||....+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 222 123445688999999999976655555559999999988 77778888888888999999998889999999
Q ss_pred CCCcEEEEEcCCCCc-eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 375 LDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.||.|.|||+..... .......+....+.+.|+.+|++|++|...|++.+|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999965432 2222223356677888998999999999999999999953
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=6e-18 Score=173.26 Aligned_cols=280 Identities=20% Similarity=0.297 Sum_probs=205.4
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEEe
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGS 163 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs 163 (715)
.+.+...+.+||+|...+.+...-. ........|..|...|++|.|+++|++||+|+
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~-----------------------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD-----------------------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc-----------------------eeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 5667778889999987655422110 11123457889999999999999999999999
Q ss_pred CCCeEEEEeCC--------C--------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 164 QSGEFTLWNGQ--------S--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 164 ~dg~I~Iwd~~--------~--------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
.+|.|.||... + +...+.+.+|...|..++|++|+.++++++.|..+++||+..+.+...+..|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 99999999654 2 3456778889999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec----------c---------c----CCceEEEEEcCCCCE
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----------G---------H----GWDVKSVDWHPTKSL 284 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~----------~---------~----~~~I~si~~spdg~~ 284 (715)
...+..++|.+-+.++++-+.|...+++++.....+.... . | ......++|+|||.+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 9999999999999999999988877777664332221111 0 1 122456789999998
Q ss_pred EEEEeC----CC-----cEEEEECCC-CceeEEeccCCCceEEEEEcC------------------CCCEEEEEECCCeE
Q 005096 285 LVSGGK----DS-----LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ------------------NGNWVLTASKDQII 336 (715)
Q Consensus 285 L~sgs~----Dg-----~I~iwDl~s-~~~~~~~~~~~~~I~sl~~sp------------------dg~~Lasgs~dg~I 336 (715)
|++.+. ++ +.++|+-+. .+.+..+.........+.|++ -+-.+|+++ .+.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence 887542 22 234444322 223333433334444444432 222344554 5689
Q ss_pred EEEECCCCeEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 337 KLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.|||..+.+.+.... .|-..|+.++|+. ++..|+..+.||...+..++..+
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 999999888776654 5778999999998 89999999999988877765543
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=6.5e-18 Score=172.14 Aligned_cols=207 Identities=23% Similarity=0.403 Sum_probs=168.4
Q ss_pred eecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCC-CEEEEEeCCCc
Q 005096 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSL 293 (715)
Q Consensus 223 ~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~ 293 (715)
.+.+|...|.+++|+| ++..||+|++|.+|.||++-.. +.+..+.+|...|..|+|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4578999999999999 5677999999999999998443 3467788999999999999964 58899999999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-eEEEEEccCCCCEEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVS 372 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-V~~l~~sp~~~~~l~s 372 (715)
|.|||+.+++.+.++. |...|.+++|+.||.+|++.+.|+.|+|||.++++.+.+-.+|.+. -..+.|.. ++.++.|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeee
Confidence 9999999999999988 9999999999999999999999999999999999999998888753 33444544 5665555
Q ss_pred Ee---CCCcEEEEEcCCCCceEEEe-eccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 373 GS---LDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 373 gs---~DG~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
|- .+..+-+||-.+-.....+. ....+.|.---|.+|..+|+.++ .|+.||.|.+..+.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 53 46789999986655443332 23455677777888887776655 59999999987655
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=5.3e-18 Score=181.64 Aligned_cols=238 Identities=16% Similarity=0.306 Sum_probs=193.9
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.++++|++.|+|++|+.||+++|+|+.|..|.||+-+-...++ ..|.+.|.|+.|+|-...|++++-+ ..-+|..+.
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q 123 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ 123 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence 4789999999999999999999999999999999855322222 3589999999999999999988763 567897765
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec---ccCCceEEEEEcCCC-----CEEEEEe
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTK-----SLLVSGG 289 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~~I~si~~spdg-----~~L~sgs 289 (715)
..+... .....|.+++|..||.+|+.|-.||+|.|-+-. ++....+. +....|.+|+|+|.. ..+++..
T Consensus 124 K~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 124 KSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred hhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 544332 345678999999999999999999999998753 33333333 366789999999863 4788888
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
...++.+|.+. |+.+.+-+...-.-.|+.+.++|.+++.|+.|+.+++|. +.|-.+.++...+..|..++..| ++.+
T Consensus 201 W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~ 277 (1081)
T KOG1538|consen 201 WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQY 277 (1081)
T ss_pred ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCce
Confidence 88899988876 555544444455678999999999999999999999997 55888888888899999999999 8999
Q ss_pred EEEEeCCCcEEEEEc
Q 005096 370 FVSGSLDGSIFHWLV 384 (715)
Q Consensus 370 l~sgs~DG~I~iwd~ 384 (715)
++.|+.||+|..|++
T Consensus 278 v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEEccCeeehhhh
Confidence 999999999988865
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.6e-17 Score=165.57 Aligned_cols=232 Identities=16% Similarity=0.272 Sum_probs=181.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN-NMN 218 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~-~~~ 218 (715)
-..+|+|.+|+.|+..+|++..+..|.||.... .+...++..|+..|+.|+|++..+.|++|+.|..-+||.. +.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 457899999999999999999999999998654 4578889999999999999999999999999999999988 433
Q ss_pred c--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE----EEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 219 N--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 219 ~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~----~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+ ....+..++..++++.|+|.++.||+++....|.||-++....- +.-+.+...|++++|++++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 2 33445567889999999999999999999999999988653321 12233567899999999999999999999
Q ss_pred cEEEEEC-----CC-------------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecC
Q 005096 293 LVKLWDA-----KS-------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGH 353 (715)
Q Consensus 293 ~I~iwDl-----~s-------------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h 353 (715)
..++|.. ++ |..+.++....++|..+.|+++|+.|+..+.|..|.+-|..... .+..+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 9999853 21 12233444567889999999999999999999999999987654 34444434
Q ss_pred CCCeEEEEEccCCCCEEEEEeCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
.-...++.|.. +..++.++.|
T Consensus 249 ~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeec--CCceeecCCC
Confidence 45666666653 3334444443
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.3e-18 Score=184.71 Aligned_cols=251 Identities=21% Similarity=0.324 Sum_probs=192.5
Q ss_pred eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CceeeeecCCCCCeEEEEEecCCCEEEEEECC
Q 005096 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 249 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~--------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D 249 (715)
...++..|...|+.++|.+....|++++.||+|++|++.. -+.+.++.+|.+.|.|+++..++..+++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3446777889999999999999999999999999999832 13566788999999999999999999999999
Q ss_pred CcEEEEECC------C----CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC--CceEE
Q 005096 250 TTVKVWDFA------R----CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK--NMVLC 317 (715)
Q Consensus 250 g~V~iwdl~------~----~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~--~~I~s 317 (715)
|+|+.|++- + ......+.+|.+.|+.++++.....|++++.||++++|+...... +++.... ..-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999999652 1 123456788999999999999999999999999999999876554 3343222 22344
Q ss_pred EEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecC-------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 318 VKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGH-------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 318 l~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+.+-... ...++...-+.-.++|+.....+..+... ...+..+.+++ +..+.+++..|+.|+++|..++..
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceeccccccccc
Confidence 5554322 22223333333444455544444444321 23477888888 779999999999999999988887
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.... .|...|+++++.++|-+|++++.|+.|++|+++...
T Consensus 524 l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 LHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred chhee-eccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 76665 588999999999999999999999999999986533
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.2e-17 Score=168.23 Aligned_cols=246 Identities=20% Similarity=0.267 Sum_probs=185.4
Q ss_pred EEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-------ceeeeecCCCCCeEEEEEecCC-CEEEEEECCCc
Q 005096 181 ILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTT 251 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~ 251 (715)
.+.+|.+.|..++|+|. +..||+|++|.+|.||++-.+ +.+..+.+|...|-.+.|++.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999984 577899999999999997654 3466778999999999999964 67899999999
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC-ceEEEEEcCCCCEEEEE
Q 005096 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~-~I~sl~~spdg~~Lasg 330 (715)
|.|||+.+++.+.++. |.+.|.+++|+.||.+|++++.|..|+|||.++++.+..-.+|.+ .-..+.|..+++++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 999999999999999999999999999999999999988766654 34556677788855555
Q ss_pred E---CCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEE
Q 005096 331 S---KDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWD 403 (715)
Q Consensus 331 s---~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~ 403 (715)
. .+..|-|||-.+.+.-..+. ...+.|.---|.++..-+.++|-.|+.|+.|.+......+..+.. ....-..
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 3 56789999987655432222 234456666677744445556668999999999887755554432 2334556
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.|-|...+ -.+.....++|++..
T Consensus 315 ~g~mPKRGl--~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 315 MGFMPKRGL--DVSKCEIARFYKLHE 338 (472)
T ss_pred ccccccccc--cchHHHHHHHHHhhc
Confidence 667665322 223333455555543
No 187
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.8e-17 Score=161.97 Aligned_cols=205 Identities=22% Similarity=0.384 Sum_probs=162.3
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC----CCeeEEEecccCCceEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA----RCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~----~~~~~~~l~~~~~~I~si~~sp--dg~~L~sgs~Dg~I~iw 297 (715)
..+|.+-|.++.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999964 3456667788999999999965 47899999999999999
Q ss_pred ECC---------CCceeEEeccCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCC------CeEEEEee-------cC
Q 005096 298 DAK---------SGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRA------MKELESFR-------GH 353 (715)
Q Consensus 298 Dl~---------s~~~~~~~~~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t------~~~~~~~~-------~h 353 (715)
.-. ......++......|+.|+|.| -|-.|++++.||.||||+.-. +....++. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 641 1223455667788999999999 467899999999999998643 33333333 45
Q ss_pred CCCeEEEEEccC--CCCEEEEEeCC-----CcEEEEEcCCCCc---eEEEeeccCCCEEEEEEcCC-C---CEEEEEECC
Q 005096 354 RKDVTALAWHPF--HEEYFVSGSLD-----GSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPI-G---YLLCSGSND 419 (715)
Q Consensus 354 ~~~V~~l~~sp~--~~~~l~sgs~D-----G~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd-g---~~L~sgs~D 419 (715)
.....|+.|++. ...+|++|+.+ +.++||..+.... .+..+.+|...|++|+|.|+ | .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 667889999873 24578888876 5899998876552 22234578999999999997 3 689999999
Q ss_pred CeEEEEecCC
Q 005096 420 HTTKFWCRNR 429 (715)
Q Consensus 420 g~I~iWdl~~ 429 (715)
| |+||++..
T Consensus 249 g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 G-VRIFKVKV 257 (361)
T ss_pred c-EEEEEEee
Confidence 9 99999974
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=179.74 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=224.3
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spd--g~~L~tgs~dg~I~i 212 (715)
+...|.+|.+.|+.|.|+..|..|++|+.|..|.+||..+.+....+ .+|...|....|-|. ...|++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45678999999999999999999999999999999999887766554 468888888888764 578899999999998
Q ss_pred EeCCCC-ce--eeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEec---ccCC---ceEEEEEcCCC
Q 005096 213 WQNNMN-NV--KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGW---DVKSVDWHPTK 282 (715)
Q Consensus 213 wd~~~~-~~--~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~---~I~si~~spdg 282 (715)
=.+... .+ ...+..|.+.|..++.-|+. ..|.+++.|+.|.-+|++.......+. .+.. ...+|+.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 875443 22 33456789999999999876 458999999999999997654433332 2222 46788888866
Q ss_pred C-EEEEEeCCCcEEEEECCCCce------eEEec------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC--C---
Q 005096 283 S-LLVSGGKDSLVKLWDAKSGRE------LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--M--- 344 (715)
Q Consensus 283 ~-~L~sgs~Dg~I~iwDl~s~~~------~~~~~------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t--~--- 344 (715)
. .+++++.|-.+++||.+.-.. +..+. ...-.|+|++|+.++.-|+++..|-.|++|.-.. +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 899999999999999875221 22222 2334699999998887777777888999995322 2
Q ss_pred -------eEEEE-eecCCC--CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 345 -------KELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 345 -------~~~~~-~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
..+.. +++|.. .|..+.|---..+++++|++-|.|.||+-.+...+..+. +....|+||.-+|.--+||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCCCchhh
Confidence 12233 777764 477777643268999999999999999987776554444 3444899999999999999
Q ss_pred EEECCCeEEEEec
Q 005096 415 SGSNDHTTKFWCR 427 (715)
Q Consensus 415 sgs~Dg~I~iWdl 427 (715)
+++.|..|+||.-
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 9999999999976
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=176.27 Aligned_cols=301 Identities=18% Similarity=0.262 Sum_probs=226.8
Q ss_pred eeeeEEEEecCCCCccEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCceEEEE-------------------------
Q 005096 131 FAAKFVHTSLNKNRCSINRVLWTPTG---RRLITGSQSGEFTLWNGQSFNFEMIL------------------------- 182 (715)
Q Consensus 131 ~~~~~~~~~l~~H~~~I~~l~~spdg---~~Latgs~dg~I~Iwd~~~~~~~~~l------------------------- 182 (715)
..+..+.+.+.+|...++.+.+.+.. .++++++.||+|++||...+++++++
T Consensus 44 ~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s 123 (792)
T KOG1963|consen 44 TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS 123 (792)
T ss_pred cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee
Confidence 33444556889999999999998854 46779999999999986654332221
Q ss_pred ------------------------------------------------------------------------------ec
Q 005096 183 ------------------------------------------------------------------------------QA 184 (715)
Q Consensus 183 ------------------------------------------------------------------------------~~ 184 (715)
..
T Consensus 124 ~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 203 (792)
T KOG1963|consen 124 VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVH 203 (792)
T ss_pred cccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhh
Confidence 12
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
|...++|.++++++++++++..||.|.+|.-.. ......+.-|.+.|.+++|+.+|.+|++|+.++.+.+|.++++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 334568899999999999999999999996432 2344566789999999999999999999999999999999998
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-----------CCCceEEEEEcCCCCEEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-----------HKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-----------~~~~I~sl~~spdg~~Las 329 (715)
+ ...+..-...|..+.+++|+++.++...|+.|.+....+.....++.+ ..+-.+.++++|.-+.++.
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 7 555666788999999999999999999999999997755444333322 1334677889997777888
Q ss_pred EECCCeEEEEECCCCeEEEEeec-----CC------CCeEEEEEccCCCCEEEEEe--------CCC--cEEEEEcCCCC
Q 005096 330 ASKDQIIKLYDIRAMKELESFRG-----HR------KDVTALAWHPFHEEYFVSGS--------LDG--SIFHWLVGHET 388 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~~~~~~-----h~------~~V~~l~~sp~~~~~l~sgs--------~DG--~I~iwd~~~~~ 388 (715)
.+..+.|.+||+-+.+.+..+.. +. ..++.++.+. .+.+++|.- .|| .+++|-.+...
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 88999999999988777655531 12 2366777777 488888763 233 58899776554
Q ss_pred ce----EEEeeccCCCEEEEEEcCC-C-CEEEEEECCCeEEEEecCCCCCc
Q 005096 389 PQ----VEIHNVHDNTVWDLAWHPI-G-YLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 389 ~~----~~~~~~h~~~V~~l~~spd-g-~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.. .++...|+..+...++... . ..+++++.||.++||.+....+.
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 33 3355668877777666543 2 37999999999999999655443
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.3e-17 Score=167.60 Aligned_cols=197 Identities=19% Similarity=0.280 Sum_probs=164.8
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-- 309 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-- 309 (715)
.+++|+.++..|++++.||++|||+..+...+.....|...|.+++|++|+++|++.+.| ..+|||++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888899999999999999999999999 89999999997776654
Q ss_pred cCCCceEEEEEcCCC---CE--EEEEECCCeEEEEECCCCeE-----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 310 GHKNMVLCVKWNQNG---NW--VLTASKDQIIKLYDIRAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 310 ~~~~~I~sl~~spdg---~~--Lasgs~dg~I~iwDl~t~~~-----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
..+..+..+.|+.|+ .+ ++.....+.|++||+..++. ..........|++++++. ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 234457778888877 33 23333456777777754433 222233456899999998 99999999999999
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++..+-.....+...|...|+.+.|+||.+++++.+.|..+.|..+.-+
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 999999888888888899999999999999999999999999999988653
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2.9e-16 Score=159.43 Aligned_cols=238 Identities=16% Similarity=0.220 Sum_probs=187.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC--CcEEEEECCCCeeE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE 263 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D--g~V~iwdl~~~~~~ 263 (715)
...+..+.|+.|...|.+|+.|| .++|+.+..............|..+-|+ ..++|..+.+ ..+++++++....+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34567778998888899999887 4778776655433333334445555564 4456655554 45999999888777
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc---CCCceEEEEEcCCCCEEEEE--ECCCeEEE
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTA--SKDQIIKL 338 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~---~~~~I~sl~~spdg~~Lasg--s~dg~I~i 338 (715)
..+. ....|.+|.++ .++|+++-++. |+|||+++.+.+.++.. +...+.+++++.++.||+.- ...|.|.|
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7765 56678899987 45677776655 99999999998887753 34457777777777898863 35789999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-EEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEE
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sg 416 (715)
||+.+.+.+..+..|++.+-+++|++ ++.+|||+++.|+ ||||.+.++..+.++..+-. ..|.+|+|++|+.+|++.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999999999999999999999999 9999999999997 89999999988888776532 468899999999999999
Q ss_pred ECCCeEEEEecCCCC
Q 005096 417 SNDHTTKFWCRNRPG 431 (715)
Q Consensus 417 s~Dg~I~iWdl~~~~ 431 (715)
++.++|+||++++..
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 999999999997654
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.5e-15 Score=163.29 Aligned_cols=239 Identities=9% Similarity=0.124 Sum_probs=163.2
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cce--EEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc
Q 005096 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQS-FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNN 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~-~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~~~ 219 (715)
+....+++++++++|++++ .++.|.+|+++. ++. +.... .......++|++++++|++++. ++.|.+|++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567889999999988765 478899999863 332 22222 2345678999999998887764 7899999987432
Q ss_pred ----eeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEE-----ec-ccCCceEEEEEcCCCCEEEEE
Q 005096 220 ----VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-----LT-GHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 220 ----~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~-----l~-~~~~~I~si~~spdg~~L~sg 288 (715)
....+ .+.....+++++++++++++++ .++.|.+||+++...+.. .. ........++|++++++|+++
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 12222 2234567788999999886655 569999999976332211 11 123456789999999999888
Q ss_pred eC-CCcEEEEECCC--Cc--eeEEeccC------CCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCe----EEEEeec
Q 005096 289 GK-DSLVKLWDAKS--GR--ELCSFHGH------KNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMK----ELESFRG 352 (715)
Q Consensus 289 s~-Dg~I~iwDl~s--~~--~~~~~~~~------~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t~~----~~~~~~~ 352 (715)
.. ++.|.+||++. ++ .+..+... ......+.|++++++|+++.. ++.|.+||+.... .+..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 32 23333211 123346889999999999864 6899999986433 2222222
Q ss_pred CCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHE 387 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~ 387 (715)
......+.+++ ++++|++++ .+++|.+|+++..
T Consensus 273 -~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 273 -ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -cccCCceEECC-CCCEEEEEEccCCcEEEEEEcCC
Confidence 23556889999 566555544 5899999988643
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.5e-16 Score=151.41 Aligned_cols=231 Identities=17% Similarity=0.232 Sum_probs=178.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----------~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
.|.+-+|++.+++|++|+.+|.|.+..+++. ..+.....|+..|..++|. +.+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4556689999999999999999999987531 2344457899999999997 34566665 599999987
Q ss_pred CCCeeEEE------e-------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC
Q 005096 258 ARCQEERS------L-------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 258 ~~~~~~~~------l-------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg 324 (715)
+...+... + ...--.|+++.+.|..+.|++++.|+.++.||+++|+..+++++|.+.|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54333110 0 0122368899999988888888899999999999999999999999999999985555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecC----------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 325 NWVLTASKDQIIKLYDIRAMKELESFRGH----------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 325 ~~Lasgs~dg~I~iwDl~t~~~~~~~~~h----------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
..|++|++||++||||+++.+++..+... ...|-+++. +++++++|+. -.+.+|.++..+....+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 67999999999999999999998877532 234666665 5678777764 478999998877655544
Q ss_pred eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 395 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 395 ~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
. ...|..+.|. .+.+++++..+.|.-|.++-
T Consensus 245 i--pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 245 I--PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred c--ccceeEeeee--cceEEEeccccceeeeeecc
Confidence 3 5578888886 44688888888899998753
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=2.5e-16 Score=179.47 Aligned_cols=291 Identities=15% Similarity=0.201 Sum_probs=207.7
Q ss_pred EEEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-------eEEEEeccCCCEEEEEEcCCCCEEEEEeC
Q 005096 135 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFN-------FEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~-------~~~~l~~h~~~V~~l~~spdg~~L~tgs~ 206 (715)
.+...|..|+..|..++.+.+. .++++|+.||+|+|||+.+.. ...++......+.++....+++.+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 3455788899999999998766 999999999999999976422 22333335678999999999999999999
Q ss_pred CCcEEEEeCCCCce-------eeeecCC--CCCeEEEEEecC-CC-EEEEEECCCcEEEEECCCCeeEEEec--ccCCce
Q 005096 207 GGAIKYWQNNMNNV-------KANKSAH--KESVRDLSFCRT-DL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDV 273 (715)
Q Consensus 207 dg~I~iwd~~~~~~-------~~~~~~h--~~~I~~l~~spd-~~-~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I 273 (715)
||.|++.+++..+. ......+ ...|...++... .. .|+.+...+.|..||++.......++ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999998876321 1111122 223333444332 23 67888889999999997765544443 345689
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcC---CCCEEEEEE--CCCeEEEEECCCCeEE
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ---NGNWVLTAS--KDQIIKLYDIRAMKEL 347 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~sp---dg~~Lasgs--~dg~I~iwDl~t~~~~ 347 (715)
++++.++.++++++|+..|.+.+||+|-+..+..+. .+..+|+.+..++ ...++++++ ..+.|.+|++.++.+-
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999888888775 3446777777766 234555544 5778999999998766
Q ss_pred EEeecCCC-------------------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce------------------
Q 005096 348 ESFRGHRK-------------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ------------------ 390 (715)
Q Consensus 348 ~~~~~h~~-------------------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~------------------ 390 (715)
..+...++ ......+.. .+.++.+|+.|..|+.||.......
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 55543311 111222222 5678899999999999998542211
Q ss_pred -----------------------------EE--------EeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 391 -----------------------------VE--------IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 391 -----------------------------~~--------~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
.. ....|...|+++++... ..+|++++.||.|+||.
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 00125667888887665 46899999999999994
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.6e-15 Score=149.93 Aligned_cols=278 Identities=16% Similarity=0.243 Sum_probs=195.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCC------CcEEEEeCCCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDG------GAIKYWQNNMN 218 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~d------g~I~iwd~~~~ 218 (715)
...+++|+.|...+++|.++| ++||+++-.+.......+.+.+.-+...-..++|+ +|+.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999999998 99999987665444444444433333222346664 44433 47999996666
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEEEeccc--CCceEEEEEcCCCCEEEE-EeCCCcE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGH--GWDVKSVDWHPTKSLLVS-GGKDSLV 294 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~--~~~I~si~~spdg~~L~s-gs~Dg~I 294 (715)
.++.++ .....|.++.+..+ .|++.- ++.|+||... +.+.++.+... ...+.+++-+.+..+|+. |-.-|.|
T Consensus 86 ~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 666655 45778999999765 455544 5689999986 55555555432 233545544444445554 4456899
Q ss_pred EEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCE
Q 005096 295 KLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 295 ~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~-I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~ 369 (715)
.|-|+...+. ...+..|.+.|.|++++-+|..||+++..|+ |||||..+++.+.+++. ....|.+|+|++ +..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccE
Confidence 9999987655 4678899999999999999999999999996 79999999999999874 346799999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCCceEE----------E-------------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVE----------I-------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~----------~-------------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|+++|+.|+|.||.++....... + +....+....++|-.+.+.++..+.||..+-+.
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 99999999999998865321111 0 001123445566766656666666777766555
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
++.
T Consensus 321 f~~ 323 (346)
T KOG2111|consen 321 FDP 323 (346)
T ss_pred ecc
Confidence 544
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.4e-16 Score=175.44 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=166.3
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCC
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~ 241 (715)
+..|+|||.+..+ ...+..+...+.+.+|++|++.|+.++.+ ..|++||+.+++.... .........++|++|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987655 55677788889999999999999877643 3699999988754322 22233345789999999
Q ss_pred EEEEEE-CCCcEEEE--ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEeccCCCceE
Q 005096 242 KFCSCS-DDTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNMVL 316 (715)
Q Consensus 242 ~Las~s-~Dg~V~iw--dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~-~~~~~~~~~~~~I~ 316 (715)
.|+.++ .+|.+.|| |+.+++ ...+..+...+.+.+|++|++.|+.++ .++...||+++.. .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 57765555 665554 455556666788999999999777655 5778888876532 222333 2333 4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC-CCCceEEEee
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG-HETPQVEIHN 395 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~-~~~~~~~~~~ 395 (715)
+++|++||++|++.+.++ |.+||+.+++........ ...++.|+| ++++|++++.++.+.+|++. ........+.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 678999999999887765 566999988754333222 345788999 88899988889988888763 2233334445
Q ss_pred ccCCCEEEEEEcCC
Q 005096 396 VHDNTVWDLAWHPI 409 (715)
Q Consensus 396 ~h~~~V~~l~~spd 409 (715)
.|.+.+...+|++-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 67788899999874
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=1.4e-16 Score=156.73 Aligned_cols=238 Identities=16% Similarity=0.338 Sum_probs=181.8
Q ss_pred EEEecCCCCccEEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCc--e--EEEE-----eccCCCEEEEEEcC-CCCE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGR-----RLITGSQSGEFTLWNGQSFN--F--EMIL-----QAHDHAIRSMVWSH-NDNW 200 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~-----~Latgs~dg~I~Iwd~~~~~--~--~~~l-----~~h~~~V~~l~~sp-dg~~ 200 (715)
+...-..|.-+++.+.|.|+.. +|||++ | .++||.+...+ . ...+ ..+...+++..|+. |-++
T Consensus 88 ~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 88 VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred eccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 3334457889999999999863 444443 3 59999877422 1 1111 23456789999986 4578
Q ss_pred EEEEeCCCcEEEEeCCCC---ceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc---CCce
Q 005096 201 MVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDV 273 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~---~~~I 273 (715)
|.+++-|-+..|||++++ .++..+..|...|.+|+|..++ ..||+++.||.||+||++..+....+... ....
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 899999999999999986 3577888999999999999865 56899999999999999876654444322 3467
Q ss_pred EEEEEcCCC-CEEEEEeCC-CcEEEEECCC-CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE---
Q 005096 274 KSVDWHPTK-SLLVSGGKD-SLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE--- 346 (715)
Q Consensus 274 ~si~~spdg-~~L~sgs~D-g~I~iwDl~s-~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~--- 346 (715)
..++|+... +++++-..| ..|.|.|+|. ...+.+++.|.+.|+.|+|.| ....|++++.|..+.|||+...-.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 789998754 577765544 5799999996 467888999999999999999 557899999999999999975322
Q ss_pred ---EEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 347 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 347 ---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
+..+. ....|+.|.|++...++|+.+..+
T Consensus 326 ~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 326 EDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 22233 667899999998888898887754
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.2e-16 Score=175.83 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=160.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEE-
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW- 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iw- 213 (715)
.+..|...|.+.+|||||++|++++.+ ..|++||+.+++.... ....+...+++|++|++.|+++. .+|.+.||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 355678889999999999999987654 3699999988754332 22233345789999999887764 67876655
Q ss_pred -eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 -QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 -d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+.++.. ..+..+...+.+.+|++|++.|+.++ .++.+.||+++.. .....+ .+.. .+++|++|+++|++++.
T Consensus 277 ~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 277 MGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 5655554 34455666788999999999877665 5788888876432 222223 3332 46789999999988877
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl--~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
++ |.+||+.+++....... ....++.|+||+++|++++.++.+.+|++ .+++.+..+..+...+..++|+|
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 65 66699998875533322 23467889999999999999998888875 35888888888888899999998
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=8.9e-18 Score=174.30 Aligned_cols=273 Identities=16% Similarity=0.272 Sum_probs=222.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
...-..+.++.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++- ...++|||-...+ +..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-lHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-LHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-Eee
Confidence 34567899999999999999999999999999999888765 56789999999988888764 5789999866444 333
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
++. ...|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 333 3568889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.+..+..|.+.|.+|++.++|+|++|.+.|..|+|||+++...+.++.. ......+++| ...+||.+ ....|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S--qkglLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS--QKGLLALS-YGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc--cccceeee-cCCeeeeeh
Confidence 9999889999999999999999999999999999999999998887775 5567777776 34455544 445899994
Q ss_pred cCCC----CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 384 VGHE----TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 384 ~~~~----~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
-... .....+.....+.|.++.|.|-..+|-+|...|.-.|
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 3211 1111122223458999999998777777766665444
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2e-16 Score=167.99 Aligned_cols=294 Identities=14% Similarity=0.232 Sum_probs=216.9
Q ss_pred CCCccEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.|...-+.|..++||+||+ +|...-.|++||+.+..+...-......|.-..++.|-..++.-..|.+|.+..-.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4666778899999999865 777888999999987655444333344455555565555556666677776643221111
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
... ....-.+++++.-..-|++++....|+-++++.+..+..+......+++|..++...+|++|+.||.|..||.+
T Consensus 129 ~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 12233456666544556666667789999999999999998888999999999999999999999999999999
Q ss_pred CCceeEEecc------CC-----CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCC
Q 005096 301 SGRELCSFHG------HK-----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 301 s~~~~~~~~~------~~-----~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~ 368 (715)
+...+.++.. +. ..|++++|+.||-.+++|+.+|.|.|||+++.+.+..-. ...-.|..+.|.+.+..
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8776665542 22 249999999999999999999999999999888765543 34567889999774433
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccc
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 440 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~ 440 (715)
-.+...+...++|||-.+++....+.. ...++.+|+-+++.+++++-.+..+..|=+...+...+.+.-+
T Consensus 286 ~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfL 355 (703)
T KOG2321|consen 286 NKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSFL 355 (703)
T ss_pred ceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhhhHH
Confidence 333334456899999998887766654 3459999999999999999999999988887777655554433
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=158.37 Aligned_cols=230 Identities=15% Similarity=0.251 Sum_probs=173.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEec--ccC-Cce
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLT--GHG-WDV 273 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~-~~I 273 (715)
+.+|++..+|.|++||..++..+..++++...++.+.|..+ ...+.+|+.||+|++||++.......+. .+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57888899999999999999999999999999999999873 4679999999999999998776655443 333 356
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCce-eEEe-ccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE
Q 005096 274 KSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRE-LCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~-~~~~-~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
.+++.+-.++++++|+. |-.|.+||+|..+. +..+ ..|...|++|.|+| +-++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777767788888753 66799999998766 5444 57999999999999 668999999999999999976533
Q ss_pred ---EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-----------CCCEEEEEEcCCCCE
Q 005096 347 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-----------DNTVWDLAWHPIGYL 412 (715)
Q Consensus 347 ---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-----------~~~V~~l~~spdg~~ 412 (715)
+.....+...|.++.|.....+.|.+-+...+..+|+++.+.....+.... ...+...-...+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 333345778899999997555678888999999999998876544433210 111222222334455
Q ss_pred EEEEEC-CCeEEEEecC
Q 005096 413 LCSGSN-DHTTKFWCRN 428 (715)
Q Consensus 413 L~sgs~-Dg~I~iWdl~ 428 (715)
+++++. -+...++-++
T Consensus 281 ~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLV 297 (376)
T ss_pred EEEeccccCceeEEEee
Confidence 555554 6677777665
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=7.6e-16 Score=162.10 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=173.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
...|+.+++||.+.|.+ +.++..+.+..|.+.|.|-.|++||.-|+++++||.|++|.. ++-+..++......|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence 35688899999999987 557788889999999999999999999999999999999974 4555555556778999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCce
Q 005096 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 315 (715)
Q Consensus 236 ~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I 315 (715)
|.++.+.++.|.. +.+.|=-+.....+...+.|.+-|.+++|++..+++++|++|-..+|||.. |..+..-..|...|
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 9999887776654 467777777777788889999999999999999999999999999999976 67777777899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
++++|+|+ +.+++++. .++++= +...+.|..++|++ ++..+++|+..|.|.+-
T Consensus 231 TSva~npd-~~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSY-NTARFS-----------SPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeccc-cceeeeee-eeeeec-----------CCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 99999999 55666653 344421 23456799999999 89999999999887653
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.6e-16 Score=164.11 Aligned_cols=195 Identities=18% Similarity=0.256 Sum_probs=159.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec--
Q 005096 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-- 225 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-- 225 (715)
.+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|++|+++|++-+.| ..+||+++++..+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999888888888999999999999999999999999 99999999986655543
Q ss_pred CCCCCeEEEEEecCC---CE--EEEEECCCcEEEEECCCCee-----EEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 226 AHKESVRDLSFCRTD---LK--FCSCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 226 ~h~~~I~~l~~spd~---~~--Las~s~Dg~V~iwdl~~~~~-----~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
..+..+..+.|+.|+ .+ ++.....+.|+.||+...+. .++.......|++++++.||++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334556778888777 33 33334456777777643322 122223445799999999999999999999999
Q ss_pred EEECCCCceeEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 296 LWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 296 iwDl~s~~~~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
|++..+-+.+..+ +.|...|+.|.|+||.+++++.+.|..+.|..+.-
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999987777655 46888999999999999999999998888877653
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=5.3e-16 Score=163.75 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=158.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----EEEEeccCCCEEEEEE-----cCCCCEEEEEeCCCcEEEEeCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVW-----SHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~-----spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.++...++-.|++|+..-.+ .+++|+...+.. +.........-.|-+| .+++--|++|-..|.|.++|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 45555666677777765443 588888763211 1111111122223333 2345567778888999998865
Q ss_pred CCceeeee----cCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC--------------Cee--------------E
Q 005096 217 MNNVKANK----SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR--------------CQE--------------E 263 (715)
Q Consensus 217 ~~~~~~~~----~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~--------------~~~--------------~ 263 (715)
..+..+.+ ...+..|+||.|-+.+ ..++++-.+|.+++||.+. +.. +
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 53322211 2345789999999854 5567777899999997621 111 1
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+....+.|..++|++||++||+.+.||.+||||..+.+.+..++..-+...|++|||||+||++|++|..|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11112345788999999999999999999999999999888888887788899999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEcc
Q 005096 344 MKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp 364 (715)
.+.+..-.+|++.|+.|+|.|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999986
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1.4e-15 Score=169.32 Aligned_cols=243 Identities=17% Similarity=0.266 Sum_probs=184.2
Q ss_pred CCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce--EE----EEeccCCCEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 005096 143 NRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF--EM----ILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYW 213 (715)
Q Consensus 143 H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~--~~----~l~~h~~~V~~l~~spdg--~~L~tgs~dg~I~iw 213 (715)
-...|+|++|++. ..+||.|+.+|.|.+||+..+.. .. ....|...|+.+.|..+. .-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3567999999995 56788889999999999887655 22 234588899999997754 448999999999999
Q ss_pred eCCCCceee------eec------CCCCCeEEEEEecC-CCEEEEEECCCcEEEEEC---CCCe-----eEEEecccCCc
Q 005096 214 QNNMNNVKA------NKS------AHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDF---ARCQ-----EERSLTGHGWD 272 (715)
Q Consensus 214 d~~~~~~~~------~~~------~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl---~~~~-----~~~~l~~~~~~ 272 (715)
+++.-.... ... .....+++++|.+. -..|++|+++|.|..-+- .... ....+..|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876532210 111 22346788899874 467899999999887332 2221 12345568899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCC--eEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--KELE 348 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~--~~~~ 348 (715)
|.++.++|-+..++..+.|-+|+||... ....+..+..+...|++++||+.. ..|+++..||.|.|||+... +.+.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999987755555559999999988 667777788788889999999954 57778888999999999653 3455
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+.+.+....+.+.|++ .+.+|++|+..|+|++|++..
T Consensus 481 s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 5555566677788887 899999999999999999954
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=154.76 Aligned_cols=251 Identities=18% Similarity=0.200 Sum_probs=187.4
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------ceeeee-cCCCCCeEEEEEecCCCEEEEEECCCc
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN------NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTT 251 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~------~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~ 251 (715)
.+.+.+|.+.|++|.|+.++++|++|+.|..++||+++.. +.+... ..|...|.|++|...+.+|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3446689999999999999999999999999999997642 222222 346689999999999999999999999
Q ss_pred EEEEECCCCeeEEEecc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEeccCCCceEEEEEcCC-CC
Q 005096 252 VKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GN 325 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~--~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~---~~~~~~~~~~~I~sl~~spd-g~ 325 (715)
|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||++... .+...........++.|+|. -.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999888877753 23489999999999999999999999999998654 22333345566888999994 57
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEE------eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-
Q 005096 326 WVLTASKDQIIKLYDIRAMKE-LES------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH- 397 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~-~~~------~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h- 397 (715)
+|++.+..+-+.|||++.-.. +.. +......-.++.|++ +++.|++.-....-.+||+-+..+.+... .|
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N 286 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHN 286 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEec-cCC
Confidence 888899999999999986432 111 111122335788999 66666665555556677876644332222 22
Q ss_pred ------CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 398 ------DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 398 ------~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
...+.+++|..|. .+++|+.+-.|++|.+....+
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcc
Confidence 2246778887554 499999999999999865443
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=2.5e-17 Score=180.79 Aligned_cols=244 Identities=19% Similarity=0.321 Sum_probs=195.8
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
+.++.+.+|...|+|+.|...|.+|++|++|..|+||..++..+.....+|...|+.++.+.++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----EeccCCCceEEEEEcCCCCEEEEEE
Q 005096 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC-----SFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~-----~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
+.++..+..+.+|.+.|++|+|+|-. +.+.||++++||.+-.-.+. .+. .+..+.++.|..++..+++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceeeeecccccccccccc
Confidence 99999999999999999999999854 77899999999988211111 111 235577888888889999999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-
Q 005096 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG- 410 (715)
Q Consensus 332 ~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg- 410 (715)
.|+.-..|.+.... .+...+.-+..+.+...+.+++-.+-.+++|++.++... ....+|...+..|.+++-+
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhh-hhhcccccceeeeeecCCCc
Confidence 99999888765321 112222222222223456677777888999999776544 4455789999999999965
Q ss_pred CEEEEEECCCeEEEEecCCCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++..+++.||.+.|||+.+...
T Consensus 409 ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred HhhhhccCCCceEeeecccCCc
Confidence 5567889999999999965443
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=4.5e-15 Score=148.20 Aligned_cols=245 Identities=11% Similarity=0.193 Sum_probs=189.9
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC-CC
Q 005096 184 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF-AR 259 (715)
Q Consensus 184 ~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl-~~ 259 (715)
.....|+|.+|+.|...++++..+..|.||...... ...++..|...|++|+|++..+.|++|+.|..-+||.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999876654 66778899999999999999999999999999999998 33
Q ss_pred --CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 260 --CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 260 --~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
.+....+..++..+++|.|+|.++.|++|+....|.||-++..+.- ..-+.+.+.|++++|++++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 3445566678899999999999999999999999999988754322 1223456789999999999999999999
Q ss_pred CeEEEEECC-----C-------------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 005096 334 QIIKLYDIR-----A-------------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 334 g~I~iwDl~-----t-------------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~ 395 (715)
+..+||..- . |..+.++....+.|..+.|++ .++.|+-.+.|..|.+-|............
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchh
Confidence 999998642 1 223444545677899999999 899999999999999999876653333322
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 396 VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 396 ~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
...-+..++.|-.+.. ++.++.|..=.++..+++
T Consensus 247 ~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 247 TAQLPLLSVSWISENS-VVAAGYDCGPVLFVTDEE 280 (361)
T ss_pred hccCCceeeEeecCCc-eeecCCCCCceEEEeccc
Confidence 2235777777775543 445555544444444433
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=3.6e-14 Score=153.76 Aligned_cols=285 Identities=11% Similarity=0.123 Sum_probs=186.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~ 225 (715)
-..+.|++||+++++++.||.|.++|+.+.+.++++.... ...++++++||+++++++ .++.|.|+|.++.+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 4557899999999999999999999999999999987644 467899999999998665 67999999999988877764
Q ss_pred C-------CCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEE-EecccCCceEEEEEcCCCCEEEEE-eCCCcEE
Q 005096 226 A-------HKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 295 (715)
Q Consensus 226 ~-------h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~-~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~ 295 (715)
. ....+..|..++....++..-. .+.|.+.|..+.+.+. .............|++++++++++ ..++.|.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 3 2346778888888886666555 4889888987654332 222345567889999999987665 5567899
Q ss_pred EEECCCCceeEEecc----CCCceEEE-------EEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 296 LWDAKSGRELCSFHG----HKNMVLCV-------KWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 296 iwDl~s~~~~~~~~~----~~~~I~sl-------~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++|+++++.+..+.. |...+..+ .|.. .+...++.-....+.+||..+++.+.++...... ..+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 999999887766532 22222221 1221 2233323233346678999999999999987777 88889
Q ss_pred ccCCCCEEEEE----eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC--CeEEEEecCCCCCcc
Q 005096 363 HPFHEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND--HTTKFWCRNRPGDTA 434 (715)
Q Consensus 363 sp~~~~~l~sg----s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D--g~I~iWdl~~~~~~~ 434 (715)
+| +++++.+. ..++.|.++|.++.+....+.......+..+.|++||+.+..+..| +.|.+||..+.+...
T Consensus 277 hP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 277 HP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp -T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 99 67777766 4557899999988755444443333459999999999877665543 369999986644433
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.3e-15 Score=165.78 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=182.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC---CCCeEEEEEec--CCCEEEEEECCCcEEEEECC-C--
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH---KESVRDLSFCR--TDLKFCSCSDDTTVKVWDFA-R-- 259 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~-~-- 259 (715)
.-..+.|++-...+++++..-.|+|||.+.++....+..+ ...|+.+++.. |..++++|+.||.|+||+-- +
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4456788888889999998889999999999887777543 45788888876 44679999999999999752 1
Q ss_pred --CeeEEEecc-------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcC-CCCEEE
Q 005096 260 --CQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ-NGNWVL 328 (715)
Q Consensus 260 --~~~~~~l~~-------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~sp-dg~~La 328 (715)
.+.+..+.+ ..+.-.-++|.....+|+++++-..|+|||+....++..+- +....|++++-+- .|+.|+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 222222221 11112456787776777777778999999999877766653 3445577766544 579999
Q ss_pred EEECCCeEEEEECCCCe---EEEEeecCCCC--eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-ceEEEeeccC--C-
Q 005096 329 TASKDQIIKLYDIRAMK---ELESFRGHRKD--VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-PQVEIHNVHD--N- 399 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~---~~~~~~~h~~~--V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-~~~~~~~~h~--~- 399 (715)
+|..||.|++||.|... .+...+.|... |..+.+.+.+-..|++|+.||.|++||++... ........|. +
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 99999999999998643 46777888877 99999988555679999999999999998842 2222222222 3
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.++++..+.+..+||+|+. +.|+||++.-+.
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 5999999999999999998 999999986433
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.6e-16 Score=164.11 Aligned_cols=211 Identities=21% Similarity=0.381 Sum_probs=162.9
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spd--g~~L~tgs~dg~I~i 212 (715)
+...|.||.+.|+|+.|+.||.+|++|+.|-.|.|||....+++..+ ++|...|.++.|-|. ++++++|..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34578999999999999999999999999999999998877766655 589999999999884 568899999999999
Q ss_pred EeCCC----------CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeE----------EEecccCC
Q 005096 213 WQNNM----------NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE----------RSLTGHGW 271 (715)
Q Consensus 213 wd~~~----------~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~----------~~l~~~~~ 271 (715)
+|+.. .+....+..|...|..|+..+++ +.+.++++||+|+-+|++..... ..+....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99874 23344557889999999999998 78999999999999999763211 11112223
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCcEEEEECCC--------Cc----------eeEEec-cC--------CCc---eEEEEE
Q 005096 272 DVKSVDWHPTK-SLLVSGGKDSLVKLWDAKS--------GR----------ELCSFH-GH--------KNM---VLCVKW 320 (715)
Q Consensus 272 ~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s--------~~----------~~~~~~-~~--------~~~---I~sl~~ 320 (715)
...|++++|.. .+|++|+.|-..++||.+. ++ ++..+. +| ... ++-++|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 56789999865 5899999999999999532 11 222221 11 112 456789
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
+|+|.-|++.-....|+++|+..++.
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99998888777677899999976543
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.4e-14 Score=144.92 Aligned_cols=280 Identities=15% Similarity=0.239 Sum_probs=192.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC--
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-- 218 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~-- 218 (715)
....+..++|++.-..+|++..|-.|+|||-+. +....++ .....|+|++|-|.+ +.|++|+. +-|+||..+..
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 345688999999888899999999999999777 4444444 345789999999975 56777776 45899975431
Q ss_pred --ce----------eeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 219 --NV----------KANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 219 --~~----------~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
.. +....+| ..|+++.|.+|+..+++++. |..|.|||.+++..+.......+.++-+.|+||+.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1111233 68999999999999999876 6789999999988877665567789999999999999
Q ss_pred EEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC----C--------eE---EEE
Q 005096 286 VSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----M--------KE---LES 349 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t----~--------~~---~~~ 349 (715)
+++.-|+..++|+.. +..+.+-.. ..+.|...+|+|+|++|+.++. |.-+||.+.- . +. +..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 999999999999554 333333333 3458999999999998776653 3334444321 0 00 111
Q ss_pred ee---------cCCCCeEEEEEccCCCCEEEEEeCCC--------cEEEEEcCCCCceEEEeec--cCCCEEEEEEcC--
Q 005096 350 FR---------GHRKDVTALAWHPFHEEYFVSGSLDG--------SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHP-- 408 (715)
Q Consensus 350 ~~---------~h~~~V~~l~~sp~~~~~l~sgs~DG--------~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~sp-- 408 (715)
+. ...+.+.+++|.| .+++|++.-..+ .|.+||.+..-.......+ ....-..|+|++
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~ 410 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK 410 (445)
T ss_pred chhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence 10 1245688999999 788888765443 3667777654433222111 111233445544
Q ss_pred -CCCEEEEEECCCeEEEEecC
Q 005096 409 -IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 409 -dg~~L~sgs~Dg~I~iWdl~ 428 (715)
++.+|.++=..|.|.-|++.
T Consensus 411 n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCcEEEEEeccCceEeeeeE
Confidence 46777777778888888764
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=9.6e-15 Score=166.82 Aligned_cols=259 Identities=18% Similarity=0.249 Sum_probs=189.9
Q ss_pred CCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------ceeeeecCCCCCeEEEEEecCCCEEEEE
Q 005096 175 SFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSC 246 (715)
Q Consensus 175 ~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~I~~l~~spd~~~Las~ 246 (715)
+|.++..+..|...|..++.+.+. .+|++|+.||+|++||+..- +...++......+.++..+.++..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 366788888899999999988765 89999999999999997542 2334444567889999999999999999
Q ss_pred ECCCcEEEEECCCCee-------EEEec--ccCCceEEEEEcCC-CC-EEEEEeCCCcEEEEECCCCceeEEec--cCCC
Q 005096 247 SDDTTVKVWDFARCQE-------ERSLT--GHGWDVKSVDWHPT-KS-LLVSGGKDSLVKLWDAKSGRELCSFH--GHKN 313 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~-------~~~l~--~~~~~I~si~~spd-g~-~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~ 313 (715)
+.||.|++.+++.... .+... ..+.-|..-+|... .. .|+.+...+.|..||+++...+.+++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999865211 11111 12222333344332 23 68888888999999999876665543 3457
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCC--CEEEEEe--CCCcEEEEEcCCCC
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE--EYFVSGS--LDGSIFHWLVGHET 388 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~--~~l~sgs--~DG~I~iwd~~~~~ 388 (715)
.|++++.++.++|+++|+..|.+.+||+|-...+.++. .+...|..+..++... .+.++++ ..+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 79999999999999999999999999999888887776 4557788888877554 5555544 46789999998876
Q ss_pred ceEEEeec------------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 389 PQVEIHNV------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 389 ~~~~~~~~------------------h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
....+... +.-....+++...+.++.+|+.|..|+.||.......
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 55444432 0111223344445678999999999999998765443
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=6.3e-15 Score=147.25 Aligned_cols=273 Identities=11% Similarity=0.255 Sum_probs=196.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
-++|||+|++||+++.- .+.|-|.++.+....+.. -..|.-|.|..|..+++ ....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999876 788999888776555443 35677889998887665 4577889999999998888888888
Q ss_pred CCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC---------------
Q 005096 228 KESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------- 291 (715)
Q Consensus 228 ~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D--------------- 291 (715)
...+..++|+|||+.|+ +...|-.|.||.+.+.+.... .-.+..+..++|++||++.+.++.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999996655 556688999999987655433 3344556889999999887766531
Q ss_pred ---------------------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-
Q 005096 292 ---------------------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES- 349 (715)
Q Consensus 292 ---------------------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~- 349 (715)
+.|.+||.--.-.+..++ ..-.+..++|+|.+++|++|+.|+.+||.+--+++.+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 223444422111111222 234588899999999999999999998876543332111
Q ss_pred -----------------------------------------------------------ee------cCCCCeEEEEEcc
Q 005096 350 -----------------------------------------------------------FR------GHRKDVTALAWHP 364 (715)
Q Consensus 350 -----------------------------------------------------------~~------~h~~~V~~l~~sp 364 (715)
++ ...-.+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 0112356789998
Q ss_pred CCCCEEEEEeCC--CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 365 FHEEYFVSGSLD--GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 365 ~~~~~l~sgs~D--G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..+++|-.+. +.+.+||+...+....+. ....|....|+|....|+.+.....+++|...
T Consensus 329 -Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 329 -DSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CceEEeeecCCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 77787776543 468999997765433333 35689999999998888888888889999764
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.5e-14 Score=141.91 Aligned_cols=240 Identities=13% Similarity=0.153 Sum_probs=174.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CC------CcEEEEECCCC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DD------TTVKVWDFARC 260 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~D------g~V~iwdl~~~ 260 (715)
...+++|+.|...++++.++| .+||+.+--+.......+...+.-+...-..++|+..+ .+ ++|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999999999888766 79998876433222222222222122112334554433 22 57999997666
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEecc--CCCceEEEEEcCCCCEEEE-EECCCeE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHG--HKNMVLCVKWNQNGNWVLT-ASKDQII 336 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~--~~~~I~sl~~spdg~~Las-gs~dg~I 336 (715)
+++.++. ....|.+|.+.. +.|++.. ++.|+||... +-+.++.+.. ....+.+++-..+..+||. |..-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7777765 667899999985 4566654 4789999987 4555655542 2334555554445556665 4467999
Q ss_pred EEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-EEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCE
Q 005096 337 KLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYL 412 (715)
Q Consensus 337 ~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~ 412 (715)
.|-|+...+. ...+..|++.|.|++.+- .+.+|||+|..|+ |+|||..++..+.++..+- ...|.+++|+++..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 9999987665 478889999999999998 8999999999998 8999999999888877653 357999999999999
Q ss_pred EEEEECCCeEEEEecCCCCCc
Q 005096 413 LCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
|+++|+.|+|+||.+......
T Consensus 241 LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCC
Confidence 999999999999999764433
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.4e-16 Score=164.30 Aligned_cols=245 Identities=16% Similarity=0.262 Sum_probs=169.0
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEec--CCCEEEEEECCCcE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTV 252 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp--d~~~Las~s~Dg~V 252 (715)
.....++.+|.+.|+|++|+.||.+|++|++|-.|.|||.-..+++..+ .+|...|.++.|-| +++.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3456788999999999999999999999999999999998766655544 68999999999988 56789999999999
Q ss_pred EEEECCCC----------eeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----------eEEeccC
Q 005096 253 KVWDFARC----------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE----------LCSFHGH 311 (715)
Q Consensus 253 ~iwdl~~~----------~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~----------~~~~~~~ 311 (715)
+++|+.+. +....+..|...|+.|+..+++ +.+.++++||+|+-||++.... +..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999742 2344556788899999999988 7999999999999999986321 1111222
Q ss_pred CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 312 KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 312 ~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
--...|+.++| +..+|++|+.|-..++||.+.. +..+..... ..++|- -.++.|+-|.-...+..
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~----~~~~pp--------~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGT----MNTCPP--------KDCRCVRYFSPGHLKNS 265 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCcc----ccCCCC--------cccchhheecCccccCc
Confidence 23567899999 5578999999999999996432 111111000 000000 01122222221111000
Q ss_pred EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 391 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
......--..++-+.|+|+|.-|++.-....|+++|++......
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 00000011246778999998766665556689999998765543
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=1.8e-16 Score=164.63 Aligned_cols=235 Identities=17% Similarity=0.252 Sum_probs=201.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
+..-..+.++.+|++|+.|+..|.|..+|+.++.+...+. ....|.++.|..+..+||++- ...++||| +.+.+++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEee
Confidence 4455688999999999999999999999999998887764 466789999998888777664 55799999 56778888
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
++.+ ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 8754 478999999999999999999999999999999999998888899999999988889999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 346 ~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.+..+.+|.+.|.+|++.+ +++|++|.+.|..|+|||++.-..+..+.. ......+++|..| +++++....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999 999999999999999999998776555554 3467788888666 4445556689999
Q ss_pred ecCC
Q 005096 426 CRNR 429 (715)
Q Consensus 426 dl~~ 429 (715)
.-..
T Consensus 360 ~d~~ 363 (545)
T KOG1272|consen 360 KDAL 363 (545)
T ss_pred hhhh
Confidence 6433
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=6.8e-14 Score=139.96 Aligned_cols=274 Identities=14% Similarity=0.261 Sum_probs=194.2
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~ 222 (715)
+.|.-|.|..|..+++++ ..|+.|.+|++..-+....+......+.+++|||||+.| .+...+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 346667788888776654 668899999999988888888888999999999999655 567778999999998876544
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECC------------------------------------CcEEEEECCCCeeEEEe
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDD------------------------------------TTVKVWDFARCQEERSL 266 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~D------------------------------------g~V~iwdl~~~~~~~~l 266 (715)
. ...+..+..++|++|+++.+.+++. ..+.|||.--.-.+..+
T Consensus 129 ~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred e-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 3 3345566889999999887766542 22444443211111122
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---------------------------------------
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--------------------------------------- 307 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--------------------------------------- 307 (715)
. .+-.+..++|+|.+++|++|+.|+.+||.+--+.+.+.+
T Consensus 208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 1 235689999999999999999999988865322111000
Q ss_pred ---------------------ec------cCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCeE
Q 005096 308 ---------------------FH------GHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 308 ---------------------~~------~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
++ .....+.-++|++|..++++-... +.+.|||++..+....+ .....|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 00 012235678999999998887533 57999999976554433 4678899
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
...|+| +...|+.+....++++|...... .+... ...-.|..+.|+-+|..++..+.|....-
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~~-~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGPR-VVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCce-EEecC-CCCceeeeEEecCCCcEEEEEcCCceEEE
Confidence 999999 66666666667789999875532 22222 23458999999999999999999975544
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=6.9e-14 Score=155.56 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=157.7
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~---dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg--~I~iw 213 (715)
+..+...+.+.+|||||+.|+..+. +..|++||+.+++.... ....+.+..++|++||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3445667899999999999987653 35799999988764433 3334445678999999988754 4455 48889
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+++++..... .+...+....|++|++.|+..+.+ + .|+++|+.+++. ..+......+.+.+|++||++|+..+.
T Consensus 273 d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc
Confidence 99887665443 344567889999999998877764 3 455557766544 334434445678999999998887664
Q ss_pred C---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe---EEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 D---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI---IKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~---I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
+ ..|.+||+++++.. .+.. ........|++||++|++++.++. +.++++ +++....+..+...+...+|+|
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3 35888999887643 3332 223457889999999999887764 677777 4666777777888899999987
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.7e-14 Score=146.17 Aligned_cols=261 Identities=14% Similarity=0.206 Sum_probs=196.2
Q ss_pred CCccEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceEEEE------eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 143 NRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 143 H~~~I~~l~~spdg~--~Latgs~dg~I~Iwd~~~~~~~~~l------~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
....|++++|.-|++ .|+..+.|..+..+++....+...+ ......|..++.. +..|++|..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 455788888887664 3444446666777777665554443 3345566666654 45788889999999999
Q ss_pred CCCCc----eeeeecCCCCCeEEEEEecCCCE-EEEEECC--CcEEEEECCCCeeEEEeccc---------CCceEEEEE
Q 005096 215 NNMNN----VKANKSAHKESVRDLSFCRTDLK-FCSCSDD--TTVKVWDFARCQEERSLTGH---------GWDVKSVDW 278 (715)
Q Consensus 215 ~~~~~----~~~~~~~h~~~I~~l~~spd~~~-Las~s~D--g~V~iwdl~~~~~~~~l~~~---------~~~I~si~~ 278 (715)
.+.+. ....+ .....+..+.-++...+ +++|+.. ..+.|||++..+.+..-+.- .-.++++.|
T Consensus 132 ~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87443 11222 22345556666655544 5568888 88999999887555443321 124678889
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCC
Q 005096 279 HPT--KSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHR 354 (715)
Q Consensus 279 spd--g~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~ 354 (715)
.+. ...|++++.-+.|++||.+.+ +.+..+.-....|+++...+++++|++|...+.+..||++.++.+.. +++..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 789999999999999999975 56777877788999999999999999999999999999999999877 88999
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
+.|++|..++ ...+|++++.|..|+|+|+.+...+..++. ...+++|.+..+
T Consensus 291 Gsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh--hccccEEEecCC
Confidence 9999999999 889999999999999999998666555543 456777777554
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5e-14 Score=156.76 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=153.8
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|.+||.+. ...+.+..+...+.+.+|++|++.|+..+.+ ..|.+||+.+++.... ......+.+.+|++|++.
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 4678888743 4444555677889999999999999876643 3599999988865433 334456678999999998
Q ss_pred EE-EEECCCcEEEEE--CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCCceeEEeccCCCceE
Q 005096 243 FC-SCSDDTTVKVWD--FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLW--DAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 La-s~s~Dg~V~iwd--l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg~I~iw--Dl~s~~~~~~~~~~~~~I~ 316 (715)
|+ +.+.++...||. +..+. ...+..+...+.+.+|++||+.|+..+. ++...|| |+.+++... +........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 86 456777766665 44433 4555555555678899999998876654 4555666 445544322 222233345
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCCcEEEEEcCCCCceEE
Q 005096 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..+|++||++|+..+.++ .|.+||+.+++... +.. ........|++ +++.|+ +...+|.-.+|-+........
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g~~~~ 408 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSDGRIKQ 408 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECC-CCCEEEEEEecCCCEEEEEEECCCCceE
Confidence 689999999999877654 69999998876543 322 23446789999 555554 444444433333322233333
Q ss_pred EeeccCCCEEEEEEcCC
Q 005096 393 IHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spd 409 (715)
....+.+.+...+|+|-
T Consensus 409 ~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 409 RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EeecCCCCCCCCccCCC
Confidence 33345667777888763
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=6.1e-15 Score=155.81 Aligned_cols=170 Identities=19% Similarity=0.403 Sum_probs=136.7
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceEEEEe----ccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC---------
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN--------- 218 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~----~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~--------- 218 (715)
.+++--|++|-..|.|.+.|....+..+.+. .....|+|+.|-+.+ ..++++-.+|.+++||.+..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4566678888888999999866533322221 234789999998865 45667788999999975211
Q ss_pred -----c--------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 219 -----N--------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 219 -----~--------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
. .+..+......|..++|++|+++||+.+.||.+||||..+.+.+..++..-+...|++|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0 111112234578899999999999999999999999999988888888778899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
|||++|++|++|..|.||.+...+.+..-.+|+++|+.|+|.+
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999986
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=9.7e-14 Score=154.87 Aligned_cols=234 Identities=13% Similarity=0.094 Sum_probs=158.7
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|+|||.... ..+.+..+...+.+.+|++|++.|+.++.+ ..|++||+.+++.... ........+++|++|++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 36899998644 445566677789999999999999877643 4699999988765433 333445567899999988
Q ss_pred EE-EEECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCceeEEeccCCCceE
Q 005096 243 FC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSL--VKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 La-s~s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg~--I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+ +.+.++ .|++||+.+++. ..+..+......++|++|++.|++++. ++. |+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 76 445555 599999987764 445545555678999999998887764 444 7777877765433 322334455
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC--cEEEEEcCCCCce
Q 005096 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG--SIFHWLVGHETPQ 390 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG--~I~iwd~~~~~~~ 390 (715)
.++|++||++|+..+.++ .|.+||+.+++.. .+. +........|++ ++++|+..+. .+ .|.+++++.. .
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~--~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGR--V 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--c
Confidence 789999999998876443 6999999877654 333 223455679999 6665554443 33 4666666432 2
Q ss_pred EEEeeccCCCEEEEEEcC
Q 005096 391 VEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (715)
...+..+.+.+...+|++
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 233333456677778875
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.2e-14 Score=155.04 Aligned_cols=219 Identities=13% Similarity=0.146 Sum_probs=153.1
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEe-
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQ- 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd- 214 (715)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|++|++.|+ +.+.++...||.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34567789999999999999987653 359999999887654 333456677899999999886 567778766665
Q ss_pred -CCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEC--CCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 215 -NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 215 -~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl--~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
+..+. ...+..+...+....|++|++.|+..+. ++...||.+ .+++... +..........+|++||++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEc
Confidence 44444 3344445555677899999998887664 455566654 4443322 2222334456899999999988776
Q ss_pred CC---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 Dg---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
++ .|.+||+.+++... +.. ......++|++|++.|+.++.++ .+.+.|+ +++....+..+.+.+...+|+|
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 54 59999998876543 332 23457889999999998877544 3666666 4666666666677788888876
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.4e-13 Score=153.66 Aligned_cols=219 Identities=14% Similarity=0.144 Sum_probs=156.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg--~I~iw 213 (715)
+..+...|.+.+|+|||+.|++++.+ ..|++||+.+++... +....+...+++|++|++.|+ +.+.+| .|++|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 44567789999999999999988743 469999998876543 334455566889999998775 445555 59999
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+.+++... +..+.......+|++|++.|+.++. ++. |+++|+.+++... +.........++|++||++|+..+.
T Consensus 278 d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 278 DLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEC
Confidence 998877543 4444555677899999999887764 444 7777776665433 2223344557899999999887754
Q ss_pred CC---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 Dg---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
++ .|.+||+.+++.. .+. +......+.|++||++|+..+.+ +.|.++|+. +.....+..+.+.+...+|+|
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 43 5999999877654 343 22345678999999998877653 468888885 455666665666777778875
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=2e-14 Score=140.09 Aligned_cols=238 Identities=19% Similarity=0.219 Sum_probs=165.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC-----CC----CEEEEEeCCCc-EE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-----ND----NWMVSGDDGGA-IK 211 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-----dg----~~L~tgs~dg~-I~ 211 (715)
.|+..|+.+.-.++ +.|.+-+.|+.+.+|++.....+.+ |.-.++++.|.+ +. ..++.-++... +.
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 35667788887777 4688999999999999887554443 233344444432 11 11111111100 11
Q ss_pred EEeCCCCceeeee----cCCCCCeEEEEEec-CCC--EEEEEECCCcEEEEECCCCeeE----------EEecccCCceE
Q 005096 212 YWQNNMNNVKANK----SAHKESVRDLSFCR-TDL--KFCSCSDDTTVKVWDFARCQEE----------RSLTGHGWDVK 274 (715)
Q Consensus 212 iwd~~~~~~~~~~----~~h~~~I~~l~~sp-d~~--~Las~s~Dg~V~iwdl~~~~~~----------~~l~~~~~~I~ 274 (715)
+-|......+... ....+.+.|..+.. +++ +|++|.++|.|.+||+.++..+ .....|...|.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 1111111111111 12345666666533 232 3667888999999999887443 33456888999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--ce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSG--RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~--~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++.+.+..+.=++++.+..+..|+++.. .. -..++..+-.|..+.+-+|++.+|+++.|++||||..++...+..+
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 9999877677778888889999988643 21 1122223445888999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+-|...|++++|++ +.+++|+++.|++|.+|++
T Consensus 290 kyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999 7899999999999999986
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.1e-13 Score=150.40 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=161.0
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|.+||.+..+.. .+..+...+.+.+|++||+.|+..+ .+..|.+|++.+++.... ......+..++|++|++.
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 36999998765543 3445677899999999999887654 235789999988764432 233344567899999998
Q ss_pred EEEE-ECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 Las~-s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+.. +.++ .|++||+++++... +..+...+...+|+||++.|+.++.+ + .|+++|+.+++. ..+......+.
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 8765 4444 59999998876544 44445567899999999988877654 3 455557776654 33333444567
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc---EEEEEcCCCCce
Q 005096 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS---IFHWLVGHETPQ 390 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~---I~iwd~~~~~~~ 390 (715)
+.+|++||++|+..+.+ ..|.+||+.+++.. .+.. ........|++ ++++|+.++.++. +.+++++... .
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~-~ 410 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-K 410 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC-e
Confidence 88999999999887644 35889999887643 3332 22345678999 7777777776664 5666663332 2
Q ss_pred EEEeeccCCCEEEEEEcC
Q 005096 391 VEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (715)
..+..|.+.+...+|+|
T Consensus 411 -~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 -ARLPATDGQVKFPAWSP 427 (429)
T ss_pred -EECccCCCCcCCcccCC
Confidence 33345777888899986
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.1e-13 Score=150.99 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=160.3
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|++||.+.. ..+.+..+...+.+.+|++||+.|+..+. +..|.+||+.+++.. .+..+...+.+.+|++|++.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 37889998544 44566678889999999999998877653 468999999887654 33445667788999999988
Q ss_pred EE-EEECCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 La-s~s~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+ +.+.++. |++||+++++. ..+..+.....+.+|++|++.|+..+. ++ .|++||+.+++.. .+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 76 4455554 78889887654 445556566778999999998887764 33 6888898766543 3433455577
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC-----cEEEEEcCCC
Q 005096 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG-----SIFHWLVGHE 387 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG-----~I~iwd~~~~ 387 (715)
...|++||++|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+| +++.|+..+. .+ .|+++|++..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999999887644 3688899865443 3333 233577889999 5665554433 32 4677777554
Q ss_pred CceEEEeeccCCCEEEEEEcC
Q 005096 388 TPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~sp 408 (715)
.. ..+. ..+.+...+|++
T Consensus 415 ~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 415 NE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred ce--EEcc-CCCCccCcccCC
Confidence 33 2222 234566677765
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=1e-13 Score=139.53 Aligned_cols=274 Identities=18% Similarity=0.338 Sum_probs=184.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEcCCC--CEEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 203 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~------------~~V~~l~~spdg--~~L~t 203 (715)
..+-|.+|.|..+|.+||||+.+|.|.++.-+... ....+..|+ ..|..+.|..++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568999999999999999999999999644322 333444443 468889998876 45677
Q ss_pred EeCCCcEEEEeCCCCceeee-----ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCceEEEE
Q 005096 204 GDDGGAIKYWQNNMNNVKAN-----KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVD 277 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~-----~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~ 277 (715)
.+.|.+|++|.+........ .......|..+..- +.+..|-.|. ..+.+.+ .+|..-|++|.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~~~~ve------a~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRHDLEVE------ASPRRVYANAHTYHINSIS 171 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccccceee------eeeeeeccccceeEeeeee
Confidence 88899999998765433221 01111222222211 1111111000 0111222 35778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC-ce--eEEeccC-----CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSG-RE--LCSFHGH-----KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~-~~--~~~~~~~-----~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
++.|...++++ +|=.|.+|+++-. .. +..++.+ ..-|++..|+| ..++++..+..|+|+|.|+|......
T Consensus 172 ~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 172 VNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred ecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 99999988876 5678999998742 22 2223322 34589999999 56888899999999999998533211
Q ss_pred ----E------------eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC------------C
Q 005096 349 ----S------------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------------T 400 (715)
Q Consensus 349 ----~------------~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~------------~ 400 (715)
. |..--..|..+.|+. ++++|++-+. -+|++||++.....+.....|.. .
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1 122235688999998 8899987654 48999999877776666555532 2
Q ss_pred ---EEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 401 ---VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 401 ---V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
-..++|+.++.+++||+..+.+++|++.+..
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2467899999999999999999999965443
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.7e-13 Score=138.88 Aligned_cols=234 Identities=16% Similarity=0.275 Sum_probs=168.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCee--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-- 262 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~-- 262 (715)
+..+..++|++.-..++++..|-.|++||-+..............|+|++|-|.+ +.|++++..| |.||.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3457788999877778899999999999987754444445566789999999965 5677777665 89998632111
Q ss_pred ------------EEEecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 263 ------------ERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 263 ------------~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
+....+| ..|+++.|.+||..+++++. |..|.|||.+++..+.......+.++-+.||||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1111233 57999999999999998875 568999999998877665445677999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE---------EEe------
Q 005096 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV---------EIH------ 394 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~---------~~~------ 394 (715)
++-|+..++|...............+.|...+|+|.+..+|++++..-.|+-..+..+.... .+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999996554444444444555999999999666667777665555443332211110 000
Q ss_pred ---e---ccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 395 ---N---VHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 395 ---~---~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
. .-.+.+.+++|.+.|.+|++.-..+.
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 01457889999999999999876543
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.1e-13 Score=149.23 Aligned_cols=219 Identities=13% Similarity=0.128 Sum_probs=156.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCc--EEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGA--IKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~---dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~--I~i 212 (715)
.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|++||+.|+ +.+.++. |.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 45567889999999999999998764 468999999887654 4555667788999999998875 5555555 777
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
||++++.... +..+.......+|++|++.|+..+. ++ .|++||+..++.. .+......+....|+|||+.|+...
T Consensus 275 ~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 275 MDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEE
Confidence 7888776543 4445556778999999999887764 33 6888898765443 3433455677789999999998876
Q ss_pred CC---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 290 KD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 290 ~D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d------g~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
.+ ..|.+||+.++. ...+.. ...+..+.|++||++|+..+.+ ..|.++|+..++. ..+. ....+...
T Consensus 353 ~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p 428 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDP 428 (435)
T ss_pred cCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCc
Confidence 53 358888986554 334432 3357789999999998876543 3578888865544 3443 34456677
Q ss_pred EEcc
Q 005096 361 AWHP 364 (715)
Q Consensus 361 ~~sp 364 (715)
+|++
T Consensus 429 ~Wsp 432 (435)
T PRK05137 429 AWSP 432 (435)
T ss_pred ccCC
Confidence 7776
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.56 E-value=6.2e-13 Score=131.67 Aligned_cols=261 Identities=15% Similarity=0.248 Sum_probs=184.1
Q ss_pred CCeEEEEeCCCCceEE---EEeccCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCceeeeecCCC------CCe
Q 005096 165 SGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSH---NDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK------ESV 231 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~---~l~~h~~~V~~l~~sp---dg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~I 231 (715)
.|++.+|++++.+... ........+..+.|.- ++. .|+.+..+|.|.++..........+.... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678999887765433 2223345677778863 444 55667788999999876554444443221 124
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeeEE--EecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-CceeEE
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKS-GRELCS 307 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s-~~~~~~ 307 (715)
.++.|+..+..++++..+|.+.+.+........ ..+.|...++..+|+.. .+++.+|++|+.+..||+|. ++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 577888888889999999999977765554444 77889999999999864 46889999999999999993 444433
Q ss_pred -eccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 308 -FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 308 -~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.+.|...|.+|.-++ +..+|++|+.|..|++||.|+ ++.+..-. ..+.|..+.++|.....++.++.-.-.+|.+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 456888899998887 678999999999999999995 45554433 44889999999966555554554555667776
Q ss_pred CCCCce----EEEeeccCCCEEEEEEcCCCCEEEEEE-CCCeEE-EEe
Q 005096 385 GHETPQ----VEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTK-FWC 426 (715)
Q Consensus 385 ~~~~~~----~~~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~-iWd 426 (715)
+.+... ......|.+-+..-.|.....+|+|++ .|..++ +|-
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 554433 345566777777888855556788865 355544 664
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.9e-12 Score=138.28 Aligned_cols=272 Identities=12% Similarity=0.206 Sum_probs=174.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-----eC-----CCcEEEE
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-----DD-----GGAIKYW 213 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-----s~-----dg~I~iw 213 (715)
...++..++|++|++++.+.. ..|+|++..+.+.+.+... ..+.++.|++.+++|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 445788899999987777665 4699999888764444333 388999999999988752 11 2347799
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE-------------------
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK------------------- 274 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~------------------- 274 (715)
+++++.....+......-+++.|+.|+.+.+ --..+.|.+||+.+.+.+.. .-|...|+
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 9988544333332222225677776654322 22234566666644222111 01122223
Q ss_pred ---------------------------------EEEEcCCCC-EEEEEe--CC---------CcEEEEECCCCceeEEec
Q 005096 275 ---------------------------------SVDWHPTKS-LLVSGG--KD---------SLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 275 ---------------------------------si~~spdg~-~L~sgs--~D---------g~I~iwDl~s~~~~~~~~ 309 (715)
.+.|+.-+. +|+.++ -| .+++++++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 344554443 222221 12 246666666333333333
Q ss_pred cCCCceEEEEEcCCCCEEEE--EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEc
Q 005096 310 GHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLV 384 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Las--gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~ 384 (715)
..+.|.++.|+++++-+++ |-+-.++.|||++ ++.+..+ ..+.-+++-|+| .+++|+.++- -|.|-|||+
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEec
Confidence 5788999999999976654 5567799999987 6666555 456778899999 7888877764 478999999
Q ss_pred CCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecC
Q 005096 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRN 428 (715)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~ 428 (715)
.+.+.+..+. ...-+-+.|+|||.+|+|++. |+.++||++.
T Consensus 344 ~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 344 PNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 8855544443 234567899999999999876 7889999984
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=3.4e-12 Score=138.40 Aligned_cols=268 Identities=11% Similarity=0.083 Sum_probs=175.2
Q ss_pred EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 160 atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
++-..+|.|.|.|..+.+.+.++.........++|++|++++++++.||.|.++|+.+.+.+..+... ....++++++|
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~D 88 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPD 88 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--T
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCC
Confidence 45567899999999999999999875544455789999999999999999999999999988887654 45688999999
Q ss_pred CCEEEEEE-CCCcEEEEECCCCeeEEEeccc-------CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeE-Eec
Q 005096 240 DLKFCSCS-DDTTVKVWDFARCQEERSLTGH-------GWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELC-SFH 309 (715)
Q Consensus 240 ~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~-------~~~I~si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~-~~~ 309 (715)
|+++++++ .++.|.|+|.++.+.+..+... ...+..|..++....+++.-. .+.|.+.|....+.+. ...
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 99988765 5899999999999988877532 346778888888886666555 4788888987654432 222
Q ss_pred cCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeec----CCCCeEEE-------EEccC-CCCEEEEEeCC
Q 005096 310 GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG----HRKDVTAL-------AWHPF-HEEYFVSGSLD 376 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l-------~~sp~-~~~~l~sgs~D 376 (715)
..........|+++++|++++ ..++.|-++|.++++.+..+.. |...+..+ .|... .+...++.-..
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~ 248 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT 248 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-
T ss_pred cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccC
Confidence 244567889999999988775 4667999999999988776643 22333332 12111 11222122222
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEE----ECCCeEEEEecCCC
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG----SNDHTTKFWCRNRP 430 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg----s~Dg~I~iWdl~~~ 430 (715)
..+.+||....+.+..+.. .... ..+..+|++++|.+. ..++.|.++|.+..
T Consensus 249 ~~v~v~d~~~wkvv~~I~~-~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPT-QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp -TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CccccchhhcCeEEEEEEC-CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 3555677766665555554 3444 788889999999998 45689999999765
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.5e-13 Score=142.73 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=181.9
Q ss_pred cCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE
Q 005096 185 HDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~ 263 (715)
+....+.|..++||+|| ++|...-.|++||+....+..........|.-.-++.|-..++.-..|.+|-+..-......
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 56677899999999987 67778889999999887776665555556666666666667777777877766543221111
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+. ..-.+++++.-.--|++++....|+-++++.|+-+..+......+++|..++...+|++|+.+|.|..||.++
T Consensus 130 ~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 1111 2234555554333344555557799999999999999987888999999999889999999999999999998
Q ss_pred CeEEEEeecCC-----------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC--C
Q 005096 344 MKELESFRGHR-----------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--G 410 (715)
Q Consensus 344 ~~~~~~~~~h~-----------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g 410 (715)
...+.++.... ..|+++.|+. ++-.+++|+.+|.|.|||++....+........-.|..+.|... .
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 77766654322 2499999996 68899999999999999999998877766666678999999765 3
Q ss_pred CEEEEEECCCeEEEEecCCCCCcc
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
..|++. +...++|||-.......
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMA 308 (703)
T ss_pred ceEEec-chHHhhhcccccCCcee
Confidence 445544 46789999986655433
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=6.3e-11 Score=128.21 Aligned_cols=272 Identities=11% Similarity=0.129 Sum_probs=179.5
Q ss_pred EEEEeCC----CeEEEEeC--CCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCC--c--eeee
Q 005096 159 LITGSQS----GEFTLWNG--QSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDD----GGAIKYWQNNMN--N--VKAN 223 (715)
Q Consensus 159 Latgs~d----g~I~Iwd~--~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~----dg~I~iwd~~~~--~--~~~~ 223 (715)
+++|+.+ +.|++|++ +++++...-. ........+++++++++|+++.+ ++.|..|++... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5566665 67888877 4444433221 23456778999999999988876 578999987764 2 2233
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCC-CeeEEE---ec----------ccCCceEEEEEcCCCCEEEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFAR-CQEERS---LT----------GHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~-~~~~~~---l~----------~~~~~I~si~~spdg~~L~sg 288 (715)
..........+++++++++|+++.. +|+|.++++.. +..... +. .......++.|+||+++|++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3334556678999999999998875 89999999976 333222 11 123457799999999988876
Q ss_pred eC-CCcEEEEECCCCc--ee--EEe-ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCe--EEEEeecC----
Q 005096 289 GK-DSLVKLWDAKSGR--EL--CSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR--AMK--ELESFRGH---- 353 (715)
Q Consensus 289 s~-Dg~I~iwDl~s~~--~~--~~~-~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~--t~~--~~~~~~~h---- 353 (715)
.. ...|++|+++... .. ..+ ......-+.++|+++++++++.+ .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 53 4579999987654 21 122 23445678999999999887766 56789999988 443 23333221
Q ss_pred --CCCeEEEEEccCCCCEE-EEEeCCCcEEEEEcCCC-CceEE--EeeccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005096 354 --RKDVTALAWHPFHEEYF-VSGSLDGSIFHWLVGHE-TPQVE--IHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWC 426 (715)
Q Consensus 354 --~~~V~~l~~sp~~~~~l-~sgs~DG~I~iwd~~~~-~~~~~--~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWd 426 (715)
......|++++ ++++| ++...++.|.+|+++.. ..+.. .........+.++++++|++|+++. .++.|.+|+
T Consensus 242 ~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578999999 55555 45556778999999543 22222 2222244589999999999998877 577999999
Q ss_pred cCCCC
Q 005096 427 RNRPG 431 (715)
Q Consensus 427 l~~~~ 431 (715)
++...
T Consensus 321 ~d~~t 325 (345)
T PF10282_consen 321 IDPDT 325 (345)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 97543
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=7.2e-13 Score=135.86 Aligned_cols=240 Identities=14% Similarity=0.218 Sum_probs=184.1
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceeeee------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 186 DHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNNVKANK------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 186 ~~~V~~l~~spdg~--~L~tgs~dg~I~iwd~~~~~~~~~~------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
...|..++|.-+++ .|+.++.|..+.++.+....+...+ ......|..++.. +..|++|..+|.+.+|.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677888876553 4444446667777766665443332 2344556666553 457888999999999998
Q ss_pred CCCe----eEEEecccCCceEEEEEcCCCC-EEEEEeCC--CcEEEEECCCCceeEEeccC---------CCceEEEEEc
Q 005096 258 ARCQ----EERSLTGHGWDVKSVDWHPTKS-LLVSGGKD--SLVKLWDAKSGRELCSFHGH---------KNMVLCVKWN 321 (715)
Q Consensus 258 ~~~~----~~~~l~~~~~~I~si~~spdg~-~L~sgs~D--g~I~iwDl~s~~~~~~~~~~---------~~~I~sl~~s 321 (715)
+.+. .+..+. ....+..+.-++... ++++|+.. ..++|||+...+.+..-+.- .-+++++.|.
T Consensus 133 k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 7432 233333 234566666665444 56668888 88999999988666554321 2367889998
Q ss_pred CC--CCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC
Q 005096 322 QN--GNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 398 (715)
Q Consensus 322 pd--g~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~ 398 (715)
+. ...|++++.-+.|++||.+.++ .+..|...+..|+++...+ ++++|++|...|.+..||++........+.+-.
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCcc
Confidence 87 7899999999999999999764 5788888899999999999 899999999999999999999988888788889
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.|++|..++...+|++++.|..|||+|+++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999999999976
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=3.9e-12 Score=141.32 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=141.6
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|.++|....+ .+.+..+...+.+.+|++|+++|+.+..+ ..|++||+.+++.... ..+...+.+++|++|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 468888876444 44455567778999999999999876643 4799999988765433 334556677999999988
Q ss_pred EEEE-ECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 Las~-s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+.. +.++ .|++||+.++.. ..+..+.......+|++|++.|+.++.. + .|++||+++++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4443 589999987654 3344444455678999999988776543 3 5888898876643 3443456677
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
.+.|++++++|+.++.++ .|.+||+.++... .+.. ........|++ +++.|+..+.+
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAP-NGRMILYATTR 385 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECC-CCCEEEEEEeC
Confidence 889999999999988776 8999999875443 2222 22345668999 55555544443
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=6.1e-13 Score=134.17 Aligned_cols=246 Identities=16% Similarity=0.287 Sum_probs=183.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd-~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...++||.+.|++...-+...-+++.+.|.+++||- .+.++.-..+. .....++++.+..+...|++|-.+|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 446789999999999999888899999999999995 44444433332 2357789999999999999999999999886
Q ss_pred CC----CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 215 NN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 215 ~~----~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
+. .....+....|...|..+.|+...+.+++.+.|..+.---.+.+..+..+. .....+++.+.-. +...|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEeccc
Confidence 54 334555667899999999999888999999998766543334443332221 0111112222211 4555666
Q ss_pred CCcEEEEECC--CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCC
Q 005096 291 DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 291 Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~ 367 (715)
.|.|.+..+. .-..+.++.+|.+.+++++|.+....|++|..|..|.+||+--.+- ..++.+|...|..+.... .-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence 6666665443 4456788999999999999999999999999999999999975443 456678889998888776 67
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 005096 368 EYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~ 386 (715)
..+++++.||.|.+|+.+.
T Consensus 253 ~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccCCCeEEEEeccc
Confidence 8899999999999999864
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=4.1e-13 Score=152.30 Aligned_cols=275 Identities=15% Similarity=0.184 Sum_probs=191.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEE--EEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSM--VWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l--~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
.+++..+-. ++|++|.. -.|.+||+.++..+..+.... ..+... ...-.+.+++++..-+.+.+-+.+..
T Consensus 9 ~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~---- 81 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ---- 81 (967)
T ss_pred cccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh----
Confidence 344444443 46665544 359999998876654433211 111100 00012345555554444433222211
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCc----eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----VKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~----I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
.+....+.|....+..+++.++.++.++.+.+||.........+...... ..-+-++.+.-++++|+.-+.|.+|+
T Consensus 82 ~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 82 IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 11223344555666668888999999999999999877666655433221 11223345555889999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
....+.-..+.+|.+.|.++.|+.||+++++.++|.++++|++++.+.+. ..-+|...|..++|.+ + .|++++.|-
T Consensus 162 ~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedc 238 (967)
T KOG0974|consen 162 PHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDC 238 (967)
T ss_pred ccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccce
Confidence 88444444688999999999999999999999999999999999988876 5668999999999987 3 999999999
Q ss_pred cEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 378 SIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.++|+.+..... .+..| ...|+.++...+...++|++.|+.+++|++...+.
T Consensus 239 tcrvW~~~~~~l~--~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 239 TCRVWGVNGTQLE--VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred EEEEEecccceeh--hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 9999976544332 44444 45799999999999999999999999999865443
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.8e-12 Score=139.59 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.|.++|.+..+. +.+..+...+...+|++|++.|+..+.+ ..|.+||+.+++.... ......+...+|++|++.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 477888875544 4555667788999999999998765533 3688999988765443 2334455678999999988
Q ss_pred EE-EECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceEE
Q 005096 244 CS-CSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (715)
Q Consensus 244 as-~s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~s 317 (715)
+. .+.++ .|++||+.+++.. .+..+........|++|++.|+..+. ++ .|+++|+.+++...... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 74 44454 5888899876543 44445556677899999998776654 33 57788888776433222 2233456
Q ss_pred EEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCCc--EEEEEcCCCCceE
Q 005096 318 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGS--IFHWLVGHETPQV 391 (715)
Q Consensus 318 l~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG~--I~iwd~~~~~~~~ 391 (715)
..|++|+++|+..+.+ + .|.+||+.+++... +.. ........|++ ++++|+ +...++. |.+++++.. ..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~--~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGR--VR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--ce
Confidence 7899999999887653 2 58889998876432 222 22233568999 555555 4444444 555555332 22
Q ss_pred EEeeccCCCEEEEEEcC
Q 005096 392 EIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 392 ~~~~~h~~~V~~l~~sp 408 (715)
..+..+.+.+...+|++
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 22323455667777765
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=1.2e-10 Score=125.95 Aligned_cols=261 Identities=11% Similarity=0.147 Sum_probs=172.3
Q ss_pred ccEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--ce--EEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005096 145 CSINRVLWTPTGRRLITGSQ----SGEFTLWNGQSF--NF--EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQN 215 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~----dg~I~Iwd~~~~--~~--~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~ 215 (715)
..-..|++++++++|+++.+ ++.|..|++... ++ +............+++++++++|+++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566889999999999877 468988887653 33 333333445667899999999998876 4899999999
Q ss_pred CCC-ceeee---e----------cCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCe--eE--EEe-cccCCceEE
Q 005096 216 NMN-NVKAN---K----------SAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQ--EE--RSL-TGHGWDVKS 275 (715)
Q Consensus 216 ~~~-~~~~~---~----------~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~--~~--~~l-~~~~~~I~s 275 (715)
+.. .+... + ........++.+++|+++|++... ...|++|+++... .. ..+ ......-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 873 33222 1 112345778999999999887654 4579999997654 21 222 234566789
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECC--CCce--eEEecc------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 005096 276 VDWHPTKSLLVSGG-KDSLVKLWDAK--SGRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 343 (715)
Q Consensus 276 i~~spdg~~L~sgs-~Dg~I~iwDl~--s~~~--~~~~~~------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t 343 (715)
++|+++++++++.. .++.|.+|++. +++. +..+.. .......|++++|+++|+++. .++.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999999876665 46789999888 3422 222211 122578999999999998876 456899999932
Q ss_pred --C--eEEEEeecCCCCeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEE
Q 005096 344 --M--KELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAW 406 (715)
Q Consensus 344 --~--~~~~~~~~h~~~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~ 406 (715)
+ +.+..+.......+.+++++ ++++|+++ ..++.|.+|+++...-.+... ...-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 44555555566689999999 56655555 467789999886443322222 223446667765
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=6.1e-12 Score=132.91 Aligned_cols=277 Identities=14% Similarity=0.199 Sum_probs=190.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--------------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-------------- 208 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg-------------- 208 (715)
-.-++..++|||.|++|++....| |.+|+...+..+..+. ...|..+.|+|+++||.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 556788999999999999988877 9999988877555554 46789999999999999865433
Q ss_pred -cEEEEeCCCCceeeeecCCCC---------------------------------------------CeEEEEEecCCC-
Q 005096 209 -AIKYWQNNMNNVKANKSAHKE---------------------------------------------SVRDLSFCRTDL- 241 (715)
Q Consensus 209 -~I~iwd~~~~~~~~~~~~h~~---------------------------------------------~I~~l~~spd~~- 241 (715)
.+.|||+.++.++..+..... .|....|++.++
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 489999988776655433222 244444554321
Q ss_pred -EEEE-----EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCce
Q 005096 242 -KFCS-----CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-----------KDSLVKLWDAKSGRE 304 (715)
Q Consensus 242 -~Las-----~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-----------~Dg~I~iwDl~s~~~ 304 (715)
.||. ...++.++||.+...+.+.+..-....-..+.|...|++|++-. .+.+++|++++.. .
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~ 266 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-S 266 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-c
Confidence 1222 23345566666654444433322223334678888888765431 1356888888843 3
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC---CcE
Q 005096 305 LCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSI 379 (715)
Q Consensus 305 ~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D---G~I 379 (715)
+.......+.|...+|.|+++.+++.+ .+-.+.++|++.. .. +......-+.+.|+| ..++++.++-| |.|
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni 342 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNI 342 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccccce
Confidence 333335688999999999888776654 7889999999855 33 333445556788999 78888876655 679
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNR 429 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~~ 429 (715)
.|||..........+.+ ....-+.|++|+.++.+... |..|+||++..
T Consensus 343 ~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 343 EIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 99999887766644432 24556789999998887653 78899999854
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=2.9e-12 Score=126.58 Aligned_cols=156 Identities=16% Similarity=0.350 Sum_probs=113.8
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEeCCCC-ceeeeec-CCCCCeEEEEEecCCCEEEEEE--CCCcEEEE
Q 005096 190 RSMVWSHNDNWMVSGDD----------GGAIKYWQNNMN-NVKANKS-AHKESVRDLSFCRTDLKFCSCS--DDTTVKVW 255 (715)
Q Consensus 190 ~~l~~spdg~~L~tgs~----------dg~I~iwd~~~~-~~~~~~~-~h~~~I~~l~~spd~~~Las~s--~Dg~V~iw 255 (715)
..+.|+++|++|++-.. -+...||.++.. .....+. .....|.+++|+|+++.|+++. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788999887764322 133555555332 2222222 2345699999999999876654 56799999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
|++ .+.+..+. ...+..|.|+|+|++|++++.+ |.|.+||+++.+.+.+++ + ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55666654 4577899999999999998754 569999999888887765 3 34789999999999998874
Q ss_pred ------CCeEEEEECCCCeEEEEee
Q 005096 333 ------DQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 333 ------dg~I~iwDl~t~~~~~~~~ 351 (715)
|+.++||+.. |+.+....
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred ccceeccccEEEEEec-CeEeEecc
Confidence 7889999985 77665543
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.8e-12 Score=136.79 Aligned_cols=306 Identities=14% Similarity=0.218 Sum_probs=210.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---------------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d 207 (715)
....+.|++|+.+..+|++|+.||.++|..+.+. ..-.++.+|++.|..+.|+.+...|-+.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567899999999999999999999999976542 1234578999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeee--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 208 GAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
|.|.||-+-.+.-.... ...++.|.+++|..||..|+....||.|.|=.++..+.... .-...-...+.|++|.+.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchheccceeecccHHHH
Confidence 99999988776533322 34567899999999999999999999998877654332211 1112234578999999998
Q ss_pred EEEeCCCcEEEEECCCC-------ceeEE----eccCCCceEEEEEc--------CCCCEEEEEECCCeEEEEECCCCeE
Q 005096 286 VSGGKDSLVKLWDAKSG-------RELCS----FHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~-------~~~~~----~~~~~~~I~sl~~s--------pdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
+.+-.+|.+.+||.... .+... +......|..+.|. ||.-.|+++..+|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 88989999999997532 11111 12223346667774 3677899999999998876554443
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCC---------cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDG---------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG---------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
-..+. ..-.|..+.|++ ++.+|++++.+. .|.+|.- -......+......|++++|-..|-.++.+-
T Consensus 252 Pvv~d-tgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CeEEe-cccEeecceecC-CCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 33333 236688899999 888998887653 3444432 1223344445567888888876664444332
Q ss_pred CCC--------------------------------eEEEEecCCCCCcccccccccCCccccceeeEEe
Q 005096 418 NDH--------------------------------TTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 454 (715)
Q Consensus 418 ~Dg--------------------------------~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~ 454 (715)
|+ .|.+||.....+..+...+.....-+++.+....
T Consensus 328 -dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~ 395 (1189)
T KOG2041|consen 328 -DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLIN 395 (1189)
T ss_pred -cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEe
Confidence 22 3556777666665555555544444544444333
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3e-13 Score=141.75 Aligned_cols=254 Identities=19% Similarity=0.264 Sum_probs=188.1
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEec--CCCEEEEEECCCcE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTV 252 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp--d~~~Las~s~Dg~V 252 (715)
..+...+..|.+.|..|.|+..|..|++|+.|..|.+||+.....+..+ .+|...|.-..|.| +...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3455678899999999999999999999999999999999887655544 57888888777876 45679999999999
Q ss_pred EEEECCC-Cee--EEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEe---ccCCC---ceEEEEEcC
Q 005096 253 KVWDFAR-CQE--ERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKN---MVLCVKWNQ 322 (715)
Q Consensus 253 ~iwdl~~-~~~--~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~---~~~~~---~I~sl~~sp 322 (715)
++=.+.. +.. ...+..|.+.|.-++..|+. ..|.+++.|+.+.-+|++.+....++ +.+.. ....|+..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9887633 222 34556788999999999875 47889999999999999976543332 22233 467888888
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeE------EEEee------cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-
Q 005096 323 NG-NWVLTASKDQIIKLYDIRAMKE------LESFR------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET- 388 (715)
Q Consensus 323 dg-~~Lasgs~dg~I~iwDl~t~~~------~~~~~------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~- 388 (715)
.. ..+++++.|-.++|||.+.... +..+. ...-.|++++++.+.+.+|++- .|-.|+++.-..+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDG 370 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccC
Confidence 44 5899999999999999876432 22222 2334699999997566666655 46678888543221
Q ss_pred -----------ceEEEeeccCC--CEEEEEE-cCCCCEEEEEECCCeEEEEecCCC
Q 005096 389 -----------PQVEIHNVHDN--TVWDLAW-HPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 389 -----------~~~~~~~~h~~--~V~~l~~-spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
....++++|.+ .|.++-| -|...++++|++-|.|.||+.+..
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 12233566654 4666665 566799999999999999997543
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=3.7e-12 Score=125.80 Aligned_cols=155 Identities=19% Similarity=0.332 Sum_probs=112.9
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CceEEEEec-cCCCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 005096 148 NRVLWTPTGRRLITGSQ----------SGEFTLWNGQS-FNFEMILQA-HDHAIRSMVWSHNDNWMVSG--DDGGAIKYW 213 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~----------dg~I~Iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~L~tg--s~dg~I~iw 213 (715)
..+.|+++|++|++-.. -+...||.++. ......+.. .++.|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988775433 13355554422 223333333 34579999999999987654 456799999
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D---g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|++ .+.+..+ ....++.|.|+|+|++|++++.+ |.|.+||+++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 4444443 45678899999999999998754 679999999888877765 3 34789999999999998864
Q ss_pred ------CCcEEEEECCCCceeEEe
Q 005096 291 ------DSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 291 ------Dg~I~iwDl~s~~~~~~~ 308 (715)
|+.++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6666544
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.8e-11 Score=136.99 Aligned_cols=234 Identities=14% Similarity=0.075 Sum_probs=149.6
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.|.++|.+..+. +.+..+...+.+..|++||+.|+..+. ++ .|++||+.+++.... ..........+|++|++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778665443 455566778899999999998876543 33 588889887765332 2223344578999999987
Q ss_pred EE-EECCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceEE
Q 005096 244 CS-CSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (715)
Q Consensus 244 as-~s~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~s 317 (715)
+. .+.++. |++||+++++. ..+..+...+...+|++|++.|+..+. ++ .|+++|+++++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 65 455664 88888877654 344445556678999999998876654 33 4777788877644332 12233456
Q ss_pred EEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc--EEEEEcCCCCceEE
Q 005096 318 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVE 392 (715)
Q Consensus 318 l~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~--I~iwd~~~~~~~~~ 392 (715)
.+|++||++|+..+.+ + .|.++|+.+++... +... .......|++++..++++...++. |++++.+. . ...
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~-~~~ 430 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-R-FKA 430 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-C-ceE
Confidence 7999999999876653 3 46667888776432 2222 122345899944444555555554 55556532 2 223
Q ss_pred EeeccCCCEEEEEEcC
Q 005096 393 IHNVHDNTVWDLAWHP 408 (715)
Q Consensus 393 ~~~~h~~~V~~l~~sp 408 (715)
.+..+.+.+...+|+|
T Consensus 431 ~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECcCCCCCcCCCccCC
Confidence 3333456677778876
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.1e-11 Score=138.28 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=150.6
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg--~I~iw 213 (715)
+..+...+.+.+|+|||++|+..+.+ ..|++||+.+++.... ....+.+...+|++||+.|+ +.+.++ .|++|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 44567788999999999999877644 3699999988765443 33345566789999999886 444455 58888
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+++++... +..+........|++|++.|+..+. ++ .|+++|+.+++...... ........+|++|++.|+..+.
T Consensus 273 d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 273 DLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEc
Confidence 998876543 3445555677899999998877664 33 58888887766433322 2233456789999999887765
Q ss_pred C-C--cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 D-S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 D-g--~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
+ + .|.+||+.+++.. .+.. ........|++||++|+..+.+ ..|.++++. +.....+....+.+...+|++
T Consensus 351 ~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 4888999887643 3332 2233467899999999877654 357777775 444445555556677777776
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=4e-12 Score=144.40 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=163.2
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCE----EEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI----RSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V----~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
...+.|....+.-+.+.++.++.++.+.|||.........+...+... .-+.++.+.-++++|+.-+.|.+|+...
T Consensus 85 ~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 85 RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 344556666777788899999999999999998877766665443322 1223455666889999999999999885
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-EecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.+.-..+.+|++.|..+.|+.|+.+++++|+|.++++|++++.+... ..-+|...|..++|+++ ++++++.|.+.++
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 55445688999999999999999999999999999999999988776 66789999999999977 8999999999999
Q ss_pred EECCCCceeEEeccCC-CceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 297 WDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
|+.+ ++.+.+++.|. ..|..++...+.-++++++.|+.+++||+..
T Consensus 243 W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 243 WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9765 45555676664 4699999999999999999999999999864
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=1.2e-11 Score=137.50 Aligned_cols=217 Identities=16% Similarity=0.167 Sum_probs=150.0
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg--~I~iw 213 (715)
+..+...+.+.+|++||++|+.++.+ ..|++||+.+++.... ..+...+.+++|++|++.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 44466678899999999999987654 4799999998765443 345566778999999987764 44444 58888
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+.++..... ..+........|++|++.|+.++.. + .|++||+.+++.. .+..+...+..++|++++++|+.++.
T Consensus 264 d~~~~~~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 264 DLDGKQLTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred ECCCCCEEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEc
Confidence 9887755433 3344445577899999988876653 3 5888888766543 34445566778999999999998887
Q ss_pred CC---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 291 Dg---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++ .|.+||+.++.. ..+... ......+|++|+++|+..+.++ .+++.+.. ++....+......+..++|
T Consensus 342 ~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred cCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 76 789999987544 333322 2345678999999988877654 45555543 4555555444444444444
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.46 E-value=4.9e-11 Score=130.82 Aligned_cols=262 Identities=11% Similarity=0.032 Sum_probs=176.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
+..|++++.+|.|+.+|..+++.+..+............ +++.+++++.++.|..+|.++++++....... .+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 568899999999999999999988776654432223333 46778888899999999999998876654332 222211
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 236 ~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-----~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
.. .+..++.++.++.|+.||.++++.+..+......+ .+..+. +..++++..++.|..+|+++++.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 34567778889999999999998877665432211 111222 34678888889999999999987765431
Q ss_pred CC----Cc------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 311 HK----NM------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 311 ~~----~~------I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
.. .. + .+..+ .+..+++++.+|.++.||.++++.+...... ....... .+..|++++.||.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeE
Confidence 10 00 0 11112 3567888889999999999999988776522 1222222 35677777889999
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.+|..+++.+.+........+..... .+..|++++.||.|++||.++.+.
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 999998887665442211222222233 356889999999999999765433
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=2e-10 Score=122.11 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=168.9
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceeeeecCCC-------
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNNVKANKSAHK------- 228 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~----------dg~I~iwd~~~~~~~~~~~~h~------- 228 (715)
++|.|.|..+.+.+..+..-...-. + +++|++.|+++.. +..|.+||..+.+.+..+..-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999888876444432 4 9999998876654 7899999999999887775422
Q ss_pred CCeEEEEEecCCCEEEEEE-C-CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ccee
Q 005096 229 ESVRDLSFCRTDLKFCSCS-D-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GREL 305 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s-~-Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s-~~~~ 305 (715)
..-..+++++||++|++.. . +..|.++|+.+++.+..+..-. ...-+..+.+..+ +-+.||......+.+ ++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 2334789999999998776 3 6899999999999988876422 2223333322222 223445544433332 2211
Q ss_pred -EE---eccCCCce-EEEEEcC-CCCEEEEEECCCeEEEEECCCC-----eEEEEeec-------CCCCeEEEEEccCCC
Q 005096 306 -CS---FHGHKNMV-LCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-----KELESFRG-------HRKDVTALAWHPFHE 367 (715)
Q Consensus 306 -~~---~~~~~~~I-~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~-----~~~~~~~~-------h~~~V~~l~~sp~~~ 367 (715)
.. +...+..+ ..-.|++ +++++++..+ |.|.+.|+... +.+..+.. ....+.-++++++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 0113455 8888877776 99999996432 22222221 122344599999555
Q ss_pred CEEEEEe---------CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCCeEEEEecCCCC
Q 005096 368 EYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 368 ~~l~sgs---------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
++++... ..+.|.++|..+.+.+.++..+ ..++.+++++|++ +|++.+ .++.|.++|....+
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 5555331 2257999999888887777753 4899999999999 777666 57889999986543
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=6.3e-11 Score=131.57 Aligned_cols=238 Identities=14% Similarity=0.132 Sum_probs=150.2
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE---EEEeCCC--cEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM---VSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L---~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
..|.+.|.+..+.. .+......+.+-+|+|||+.+ ++...+| .|.+.++..++.... ..........+|+|||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 46778887665543 344455667788999999752 3555554 467778877654433 2344455678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---eeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CceeEEe
Q 005096 241 LKFCSCSD-DT----TVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLW--DAKS-GRELCSF 308 (715)
Q Consensus 241 ~~Las~s~-Dg----~V~iwdl~~~---~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iw--Dl~s-~~~~~~~ 308 (715)
+.|+..+. +| .+.+||+..+ +...............+|+|||+.|+..+ .++...|| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99887653 22 3444776542 22223322233456789999999877765 45654444 5542 3334445
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCC--CcEEEE
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLD--GSIFHW 382 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~D--G~I~iw 382 (715)
......+....|+|||++|+..+.+ ..|.+||+.+++.... ......+....|++ +++.|+ ++..+ ..|++|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 5455567889999999999877643 3799999988876443 33345677899999 555554 44433 457788
Q ss_pred EcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 383 LVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
|+..++.. .+. ...+.+...+|++-
T Consensus 401 dl~~g~~~-~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKTR-KIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCEE-Eee-cCCCcccCceecCC
Confidence 88665432 222 23455667788764
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.8e-11 Score=136.89 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=146.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCCc--EEEEeC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGA--IKYWQN 215 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg~--I~iwd~ 215 (715)
.+...+.+.+|+|||++|+..+.+ ..|++||+.+++.... ....+.....+|++|++.|+. .+.++. |++||+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 345567889999999999876543 3588999988765433 323344557899999998864 556665 777788
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D- 291 (715)
++++... +..+...+...+|++|++.|+..+. ++ .|+++|+++++.... ..........+|++||++|+..+.+
T Consensus 294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecC
Confidence 8776543 3344556678899999998877654 33 477778877654433 2222334567999999988776553
Q ss_pred C--cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 292 S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 292 g--~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
+ .|.++|+++++.. .+... .......|++||+.|+..+.+ + .|+++|. +++....+......+...+|+|
T Consensus 372 g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 372 GKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 3 4566788877643 33322 223356899999988876643 3 4777786 4666666766667778888876
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.9e-11 Score=131.69 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=156.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecC---CCCCeEEEEEe--------------------cCCCEEEEEECCCcEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFC--------------------RTDLKFCSCSDDTTVK 253 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~s--------------------pd~~~Las~s~Dg~V~ 253 (715)
-..++|....||.++||+..++++...+.. ..+..++..|. .|...|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 356889999999999999998877666532 23344455442 1335578888899999
Q ss_pred EEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE
Q 005096 254 VWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 254 iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+..+.+.++.++.....+.++++++|+..|++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999998888776 5888999999998889999999999999999999999999999999999999999999999886
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC-----CCCEEEEEeCCCcEEEEEcCC
Q 005096 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF-----HEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 332 ~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+.|++||+++.+.+..|.+|.+.|+++.|... +..+|.+...+..|.+|-++.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 68999999999999999999999999999773 234455555666788887654
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=2e-11 Score=131.58 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=157.0
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEec---cCCCEEEEEEc------C--------------CCCEEEEEeCCCcE
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWS------H--------------NDNWMVSGDDGGAI 210 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~---h~~~V~~l~~s------p--------------dg~~L~tgs~dg~I 210 (715)
+...++|....||.++|||..+.+....+.. -.+..++..|. + |...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456899999999999999998877666543 13344444442 1 33467888899999
Q ss_pred EEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 211 KYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
.+|++..+++...+. .|.+.|.++.++.+-..|.+++.|+.|..|+..++..++.+......+.++++++|++.|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998887775 688999999999999999999999999999999999999999999999999999999999988
Q ss_pred eCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC-----CCEEEEE-ECCCeEEEEECCC
Q 005096 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GNWVLTA-SKDQIIKLYDIRA 343 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-----g~~Lasg-s~dg~I~iwDl~t 343 (715)
+ +.|++||+++++.+..|.+|.+.|+++.|..+ |.+++++ ..+..|.+|-++.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 68999999999999999999999999999876 6666654 3555677776654
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.42 E-value=1.6e-10 Score=126.67 Aligned_cols=255 Identities=13% Similarity=0.042 Sum_probs=170.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCe---
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I--- 231 (715)
++..+++++.+|.|+.+|.++++.+............... .++.+++++.++.|..||.++++.+.........+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4668889999999999999999887765543222111222 34567778889999999999998776654433221
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC----c------e-EEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW----D------V-KSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 232 --~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~----~------I-~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
.+..+ .+..++.+..++.|..+|.++++.+........ . + .+..+ .+..+++++.++.++.||
T Consensus 182 ~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 182 GSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALD 257 (377)
T ss_pred CCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence 11112 234677888899999999998877654321100 0 1 11122 256788888899999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.++++.+..... ........ ++..|++++.||.|..+|..+++.+....... ....+... .+..|++++.+|
T Consensus 258 ~~tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G 330 (377)
T TIGR03300 258 LRSGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEG 330 (377)
T ss_pred CCCCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCC
Confidence 999988776652 11222222 46778888899999999999999887764322 22233333 356888889999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCE-EEEEEcCCCCEEEEEECCCeEEEE
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTV-WDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V-~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.|+++|.++++.+.+... +...+ ....+. + ..|+.++.||.|+.|
T Consensus 331 ~l~~~d~~tG~~~~~~~~-~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKT-DGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCEEEEEEc-CCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999988877665543 33233 233333 3 458889999999876
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.5e-11 Score=132.03 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=144.8
Q ss_pred cCCCCccEEEEEEcCCCCEEE---EEeCC--CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CC----c
Q 005096 140 LNKNRCSINRVLWTPTGRRLI---TGSQS--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG----A 209 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~La---tgs~d--g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg----~ 209 (715)
+......+.+-+|||||+.++ +...+ ..|++.++.+++.... ....+.....+|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 333455667889999997532 34334 3588889887765443 334555667899999998876543 23 3
Q ss_pred EEEEeCCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEE--ECCC-CeeEEEecccCCceEEEEEcCCC
Q 005096 210 IKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVW--DFAR-CQEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 210 I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iw--dl~~-~~~~~~l~~~~~~I~si~~spdg 282 (715)
+.+|++..+ ............+...+|++||+.|+..+ .++...|| ++.. +.....+......+...+|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444666542 22222222233456789999999888766 45654555 4432 23344455455567889999999
Q ss_pred CEEEEEeCC---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCC
Q 005096 283 SLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKD 356 (715)
Q Consensus 283 ~~L~sgs~D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t~~~~~~~~~h~~~ 356 (715)
+.|+..+.+ ..|.+||+.+++... +......+....|++||++|+..+. +..|++||+.+++..... .....
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCc
Confidence 988876543 369999999887544 3333446788999999998886543 357889999877654433 34455
Q ss_pred eEEEEEcc
Q 005096 357 VTALAWHP 364 (715)
Q Consensus 357 V~~l~~sp 364 (715)
+...+|+|
T Consensus 417 ~~~p~Ws~ 424 (428)
T PRK01029 417 KRFPSWGA 424 (428)
T ss_pred ccCceecC
Confidence 67778876
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.41 E-value=3.6e-10 Score=135.21 Aligned_cols=286 Identities=13% Similarity=0.190 Sum_probs=198.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEE----eCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iw----d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~- 216 (715)
...+.|.++.|-.+...|+++..+|.|.++ |..+.. +.....-+..|.+++||||+.+|+..+.+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 455789999999999999999999999999 544433 33334457899999999999999999888888776421
Q ss_pred ---------C---C----------ceeeeecC------------------------CCCCeEEEEEecCCCEEEEEEC--
Q 005096 217 ---------M---N----------NVKANKSA------------------------HKESVRDLSFCRTDLKFCSCSD-- 248 (715)
Q Consensus 217 ---------~---~----------~~~~~~~~------------------------h~~~I~~l~~spd~~~Las~s~-- 248 (715)
. + +....+.+ ..+.-..|+|..||.+||+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 0 00000000 2334567889999999998774
Q ss_pred -C---CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEe----ccCCCceEE
Q 005096 249 -D---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSF----HGHKNMVLC 317 (715)
Q Consensus 249 -D---g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~~~~~----~~~~~~I~s 317 (715)
+ ..|+||+-+ +....+.....+--.+++|.|.|++|++.-. ...|.+|.-+ |-.-..| ......|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeE
Confidence 2 579999854 5554444444444568999999999998764 3457777743 4333333 234567999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEeecC-CCCeEEEEEccCCCCEEEEEeCCCcEEEEEc----CCCC--
Q 005096 318 VKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV----GHET-- 388 (715)
Q Consensus 318 l~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h-~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~----~~~~-- 388 (715)
|.|+.|+..||+...|. |.+|-..+.. ...++... ...+..+.|++.+...|...+.+|.+.++++ ....
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 9999988754 23333322 3345569999987788888887777765543 2110
Q ss_pred -----ceEEEee-----------------------ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 389 -----PQVEIHN-----------------------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 389 -----~~~~~~~-----------------------~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
....+.. .....|.+++|++++..+++...||.|.+|......
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 134579999999998889999999999999965543
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=7.5e-12 Score=126.44 Aligned_cols=252 Identities=15% Similarity=0.281 Sum_probs=195.8
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCceeeee-cCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd-~~~~~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
.+...+++|.+.|++...-+...-+++.+.|.+++||- .+.++....+ ......++++.+..+...|+++-.+|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 35566788888899888888888899999999999995 3334333222 334678899999999999999999999998
Q ss_pred EEC----CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE
Q 005096 255 WDF----ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 255 wdl----~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg 330 (715)
+.+ ++....+....|...|..+-|+-..+.+++.+.|..+.---.+++..+..+. .....+++.+.-. +.++|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEec
Confidence 866 3445566677899999999999888999999999887655555555443322 1111122222211 55667
Q ss_pred ECCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC
Q 005096 331 SKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 331 s~dg~I~iwDl--~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (715)
...|.|.+..+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+...........+|.+.|..+....
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 67776666544 34567889999999999999999 8999999999999999999888888888888999999999988
Q ss_pred CCCEEEEEECCCeEEEEecCCCCC
Q 005096 409 IGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 409 dg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.-+.|++++.||.|.+|+++-...
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hheeeeeccCCCeEEEEeccceee
Confidence 889999999999999999976444
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.3e-11 Score=125.69 Aligned_cols=279 Identities=17% Similarity=0.325 Sum_probs=197.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEeC
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-----------GGAIKYWQN 215 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-----------dg~I~iwd~ 215 (715)
=+-+.|||.|.||+|-...| |.+|-.++...+..+. | -.|.-+.|||+.+||+|-+. ...|+|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999999988 9999988877776664 2 46888999999999998542 257999999
Q ss_pred CCCceeeeecCCCC--C-eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--
Q 005096 216 NMNNVKANKSAHKE--S-VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-- 290 (715)
Q Consensus 216 ~~~~~~~~~~~h~~--~-I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-- 290 (715)
.+|.+.+.+....+ . -.-+.||.|++++|....| .|.||+..+...+..-.-.-..|....|+|.+++||.=..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998887765322 2 2346899999999887764 6999998765444333334567899999999998875432
Q ss_pred ---CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC-------C---CeEEEEECCCCeEEEEeecCCCCe
Q 005096 291 ---DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-------D---QIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 291 ---Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~-------d---g~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
-..+.|..+-+++.+++.+.+.-.-..+-|-.+|++|++--. . ..+.|+.++....-.....-...|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 235778888888888777666555566788889998886321 1 135566666544433333456778
Q ss_pred EEEEEccCCCCEEEEEeC--CCcEEEEEcCCCCceEE-EeeccCCCEEEEEEcCCCCEEEEEE---CCCeEEEEecCC
Q 005096 358 TALAWHPFHEEYFVSGSL--DGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCSGS---NDHTTKFWCRNR 429 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~--DG~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs---~Dg~I~iWdl~~ 429 (715)
...+|-|.++++.+..+. ..+|.+|.+++.....+ +........+.+.|+|.|++++.+. ..|.+.++|++.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 999999944444333333 34689998874322222 2222345678899999999988765 468999999874
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=8.9e-10 Score=115.49 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=131.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceeeeecCCCCCeEE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-AIKYWQNNMNNVKANKSAHKESVRD 233 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~ 233 (715)
+|++++..+. |...|.+...+-.+. -++...|.-..+.-+.+-++.|..|| .|-|+|.++++.... ...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence 3455555543 344454433332222 24566788888888888899999998 899999998876654 456678999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceeEEec
Q 005096 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFH 309 (715)
Q Consensus 234 l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~~~~~~~ 309 (715)
+..+++|++++++.....|.++|+++++....-+...+-|+.++|++++++||.+--+| .|++||+.+++......
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999999999999999999999887766667778899999999999999887665 58999999877655443
Q ss_pred cCCCceEEEEEcCCCCEEEEEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs 331 (715)
..+.-.+-+|.+|+++|..-+
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCCCCcEEEEEe
Confidence 445556788999999888655
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.5e-10 Score=121.63 Aligned_cols=277 Identities=14% Similarity=0.257 Sum_probs=192.8
Q ss_pred cEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceEEEEeccC--CCEE-EEEEcCCCCEEEEEeCCCcEE
Q 005096 146 SINRVLWTPTGRRLITGSQ-----------SGEFTLWNGQSFNFEMILQAHD--HAIR-SMVWSHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~-----------dg~I~Iwd~~~~~~~~~l~~h~--~~V~-~l~~spdg~~L~tgs~dg~I~ 211 (715)
.|.-+.|||+.+||+|-+. ...|+|||+.+|.+.+.+.... ..+. -+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 5888999999999998653 2469999999999988887633 2233 4589999999987655 5799
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-----Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
||+..+..++.........|....|+|.++.||--+. -..+.+..+-+...+++..-+.-.=..+.|-.+|.+|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 9998876666655566778999999999988875432 13577777777777776655544445677878888877
Q ss_pred EEeC----------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCC-C---eEEEE
Q 005096 287 SGGK----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRA-M---KELES 349 (715)
Q Consensus 287 sgs~----------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t-~---~~~~~ 349 (715)
+--. -..+.|+.++....-.........|...+|-|.|+.+++.+. ..+|.+|.+++ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 5321 124667777655443333335677899999999988876553 35788888873 2 22333
Q ss_pred eecCCCCeEEEEEccCCCCEEEEE---eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CC
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSG---SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DH 420 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sg---s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg 420 (715)
+ .....+.|.|+| .+.+++.+ |..|.+.++|.+.......-.. .....+.+.|.|.|+|++|++. |.
T Consensus 490 ~--dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 490 L--DKKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred h--cccccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCc-cccccccceECCCCCEEEEeeehhhhcccc
Confidence 3 235678899999 67776655 4568899999875322222121 2235678999999999999986 34
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
-.+||++
T Consensus 566 GYri~tf 572 (698)
T KOG2314|consen 566 GYRIFTF 572 (698)
T ss_pred ceEEEEe
Confidence 4555654
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5.1e-12 Score=133.61 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=195.0
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.||..+|.+++--.+.+-+++++.|.+|++|.++. ..+..++..|+..|.++.|..+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 35789999999999888888999999999999998653 23566788999999999999888887764 7889
Q ss_pred EEEeCCCCceeeee-----cCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEec-----ccCCceEEEEEc
Q 005096 211 KYWQNNMNNVKANK-----SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWH 279 (715)
Q Consensus 211 ~iwd~~~~~~~~~~-----~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~I~si~~s 279 (715)
.+||--.+...... .+....|.|+.-- +... ++.|+...+|+++|.+.++....++ +....++++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99997666544422 1222334443221 2233 4445788999999998877665554 334568999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE-EECCCCeEEEEeecCCCCeE
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL-YDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i-wDl~t~~~~~~~~~h~~~V~ 358 (715)
+.|+.++++-.+|+|.+.|.++|+.+..++.-......++- |....|+....|..+.| |...++......+.......
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 99999999999999999999999999888755554544442 44556777777888888 87666655544442222211
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCC----ceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHET----PQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~----~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.+. .-+..|++......+.+|.-.... .+.++ .....+..++++.-|-+.-+..|.+.|.|.+.
T Consensus 965 flq---svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 965 FLQ---SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred hhh---ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence 111 124456666666677777432111 11111 12235678888888888788888888988763
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1e-08 Score=105.40 Aligned_cols=265 Identities=9% Similarity=0.124 Sum_probs=175.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CceEEEE--eccCCCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQS--FNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW 213 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~--~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iw 213 (715)
.+...++-|+|++++++|.++..+ |.|..|.++. +++...- ......-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 355667889999999999988665 6677766554 4443322 122233478999999999988765 4889999
Q ss_pred eCCC-Cceee--eecCCCCC----------eEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEe---cccCCceEEE
Q 005096 214 QNNM-NNVKA--NKSAHKES----------VRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL---TGHGWDVKSV 276 (715)
Q Consensus 214 d~~~-~~~~~--~~~~h~~~----------I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l---~~~~~~I~si 276 (715)
-+.. +.+.. .+..|.+. +....+.|++++|++++. ...|.+|++++++....- ...+..-+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 33221 12234433 788899999999988764 347999999876554321 1345667899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEec---------cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCC-
Q 005096 277 DWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFH---------GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA- 343 (715)
Q Consensus 277 ~~spdg~~L~sgs-~Dg~I~iwDl~s~-~~~~~~~---------~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t- 343 (715)
.|+|++++..+.+ -+++|.+|+.+.. ..+..+. ....+...|.+++||++|+++.. ...|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999877665 4889999988763 2222222 13456788999999999998763 23677777653
Q ss_pred -CeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCC-CcEEEEEcCCCCceEEEee--ccCCCEEEEEEc
Q 005096 344 -MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWH 407 (715)
Q Consensus 344 -~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-G~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s 407 (715)
++. +.....+...-+...+++ ++++|+++..| ..|.+|.++...-.+.... .......|+.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 322 222233444578889999 66766666544 5699998876554444332 223345566653
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.3e-11 Score=145.63 Aligned_cols=202 Identities=19% Similarity=0.329 Sum_probs=165.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...++.+-..|.++.=+|...+.+||+.||.|++|....+..+..++. -...|+.+.|+.+|+.+.++..||.+.+|..
T Consensus 2201 ~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2201 SVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred eeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 345666778899999999999999999999999999888777766653 3478999999999999999999999999998
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEE---CCCcEEEEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s---~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
. .+.....+.|.....++.|.. ..+++++ +++.+.+||..- ......-..|...++++++-|...+|++|+.+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 7 555666788998888888875 5566654 478999999732 11222227899999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
|.|++||++..+.+..+.. +. ...+|++++..|.|+||++.....+.++.
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999998777766653 44 56789999999999999999877776664
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=1.7e-11 Score=133.95 Aligned_cols=285 Identities=20% Similarity=0.360 Sum_probs=198.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEecc-CCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC-
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAH-DHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM- 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h-~~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~- 217 (715)
-.+.+.++.++|.|+-+|.++.-| +.|.|+.. +...+-+..- .-.|-.+.|++.. .+-++......-.||++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 356788999999999999999988 66677664 3333322211 2236677887753 3445555556667898754
Q ss_pred --CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 218 --NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 218 --~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
..+...+.+|...|+++.|.+.. ..+++++.|..|..||+++-. .+..+..-......|+|+-....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 34566778999999999999865 568999999999999997643 34455555566788999876666666777788
Q ss_pred EEEEECCCC-ceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEEEccCCCCEE
Q 005096 294 VKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 294 I~iwDl~s~-~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l 370 (715)
|++||++.+ ..+..+++|...|..+.|+. ....+.+++.|++|++||..+...... ....+..|..-++.|.++.++
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999975 46777888888999999876 335688899999999999875433222 222334455555555443333
Q ss_pred EEE----------eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC----------CCEEEEEECCCeEEEEecC
Q 005096 371 VSG----------SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI----------GYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sg----------s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----------g~~L~sgs~Dg~I~iWdl~ 428 (715)
+-- .-+.....|++.+....+..+.+|++.|....|-.. ...|+|-+.|..+++|-++
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 221 122233445555566666777889998877766432 2479999999999999875
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=5.6e-11 Score=118.45 Aligned_cols=277 Identities=18% Similarity=0.313 Sum_probs=181.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEcCCC--CEEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 203 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~------------~~V~~l~~spdg--~~L~t 203 (715)
..+.|+++.|...|.+|++|...|.|.+|..+... ....++.|+ ..|..|.|..++ +.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999755432 233344543 467889998764 46677
Q ss_pred EeCCCcEEEEeCCCCceeeeecC-CCCCeEEEEEecCCC-------EEEEEEC-CCcEEEEECCCCeeEEEe-cccCCce
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDL-------KFCSCSD-DTTVKVWDFARCQEERSL-TGHGWDV 273 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~-------~Las~s~-Dg~V~iwdl~~~~~~~~l-~~~~~~I 273 (715)
.+.|.+|++|.+....+...... ..+. +.+--.|. .+--++. |..|.. +..+.. ..|..-|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~---~~~~~~g~~~s~~~l~lprls~hd~iiaa------~p~rvyaNaH~yhi 175 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDS---FHSPMGGPLTSTKELLLPRLSEHDEIIAA------KPCRVYANAHPYHI 175 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccc---cccccCCCcCCHHHhhcccccccceEEEe------ccceeccccceeEe
Confidence 78899999999876543322111 0010 00000110 0000011 111111 111112 4577889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEeccCC-----CceEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHK-----NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~---~~~~~~~~~-----~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~ 344 (715)
.+|.|+.|...++++ +|-.|.+|+++--. .+..++.|. ..|++..|+| ..+.+...+..|.|++-|+|..
T Consensus 176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 999999988877765 56789999886422 223333333 4588999999 4567778888999999999843
Q ss_pred eEE----------------EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC----------
Q 005096 345 KEL----------------ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD---------- 398 (715)
Q Consensus 345 ~~~----------------~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~---------- 398 (715)
... .-+..-.+.|..+.|++ ++++|++-+.- +|+|||++..+..+.....|.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 211 11223345788999998 88888876654 899999998877666553332
Q ss_pred --CCE---EEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 399 --NTV---WDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 399 --~~V---~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
..| ..+.|+.|.+.+.+|+..+..-||-....+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeeccccCC
Confidence 223 357889999999999999998888755433
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=3e-10 Score=112.92 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=160.3
Q ss_pred CCCcEEEEeCCCCceee---eecCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEECCCCeeEEEecccCC------c
Q 005096 206 DGGAIKYWQNNMNNVKA---NKSAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGW------D 272 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~---~~~~h~~~I~~l~~sp---d~~-~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~------~ 272 (715)
..|.+.+|+++..+... ........+..+.|+. ++. .++-+..+|.|.++..........+.+-.. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678888877654432 2233445667777764 344 466677789999998765555444443221 2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECC-CCeEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--CSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIR-AMKELE 348 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~--~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~-t~~~~~ 348 (715)
..++.|+..+..++++..+|.+.+.+....... ..++.|..+++..+|+. +.+++++|+.|+.+..||+| .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457889988889999999999997766655443 37889999999999987 45789999999999999999 444444
Q ss_pred E-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-eEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEE
Q 005096 349 S-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 425 (715)
Q Consensus 349 ~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iW 425 (715)
. .+.|...|.+|.-++....+|++|++|-.|++||.++-.+ +.... -.+.|+.+.+++.- ..|+.++.-+-++|-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 4 5679999999999998889999999999999999985443 33322 24789999999863 233333334446666
Q ss_pred ecCCCCCc
Q 005096 426 CRNRPGDT 433 (715)
Q Consensus 426 dl~~~~~~ 433 (715)
+.+....+
T Consensus 282 ~~~~~~~e 289 (339)
T KOG0280|consen 282 DSSDKVLE 289 (339)
T ss_pred Eecccccc
Confidence 66544333
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.4e-10 Score=124.55 Aligned_cols=245 Identities=14% Similarity=0.223 Sum_probs=175.1
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE--eccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+..+|.||+..|.-+.|+.+...|-+...+|.|.||-+-++...... ....+.|.+++|+.||..|+....||.|.|
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 356789999999999999999999999999999999987766543222 234567899999999999999999999988
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------eE----EEecccCCceEEEEEc--
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EE----RSLTGHGWDVKSVDWH-- 279 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-------~~----~~l~~~~~~I~si~~s-- 279 (715)
=.++.++... ......-...+.|++|.+.++.+-.+|.+.++|....- +. ..+......|..+.|.
T Consensus 142 GsvdGNRIwg-KeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 142 GSVDGNRIWG-KELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred Eeeccceecc-hhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 7776544322 12222334578899999998888899999999974321 11 1122233447777775
Q ss_pred ------CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---------eEEEEECCCC
Q 005096 280 ------PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------IIKLYDIRAM 344 (715)
Q Consensus 280 ------pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---------~I~iwDl~t~ 344 (715)
||...|+++..+|.+.|-.-.+......+. ..-.|..+.|+++|..|++++.+. .|.+|.. -|
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G 298 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YG 298 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-ch
Confidence 366789999999999887554433333333 236689999999999999987543 4555554 47
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+.+.+++.....|++++|-. .+-.++. ..|+.|++=++
T Consensus 299 ~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanI 336 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANI 336 (1189)
T ss_pred hheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEee
Confidence 88899999999999999975 3323332 23445544433
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.4e-08 Score=104.31 Aligned_cols=269 Identities=12% Similarity=0.139 Sum_probs=182.6
Q ss_pred CCeEEEEeCCCCce---EEEEeccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC--Ccee--eeecCCCCCeEEE
Q 005096 165 SGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNM--NNVK--ANKSAHKESVRDL 234 (715)
Q Consensus 165 dg~I~Iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~--~~~~--~~~~~h~~~I~~l 234 (715)
+.-|++|++++..- ...+-...+..+-|+|+++.++|.++.. +|.|..|.++. +++. .........-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 34599999874221 1122345678899999999999988754 47788777765 4332 2222233344889
Q ss_pred EEecCCCEEEEEEC-CCcEEEEECCC-CeeEE--EecccCCc----------eEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005096 235 SFCRTDLKFCSCSD-DTTVKVWDFAR-CQEER--SLTGHGWD----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 299 (715)
Q Consensus 235 ~~spd~~~Las~s~-Dg~V~iwdl~~-~~~~~--~l~~~~~~----------I~si~~spdg~~L~sgs~-Dg~I~iwDl 299 (715)
++++++++|+++.. .|.|.++-+.+ +.... .+..|.+. +....++|++++|++.+. ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999988876 57899999855 33221 12224433 788999999999888764 346999999
Q ss_pred CCCceeEEe---ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEee---------cCCCCeEEEEEccC
Q 005096 300 KSGRELCSF---HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM-KELESFR---------GHRKDVTALAWHPF 365 (715)
Q Consensus 300 ~s~~~~~~~---~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~-~~~~~~~---------~h~~~V~~l~~sp~ 365 (715)
..++....- ......-+.|.|+|++++.++.+ .+++|.+|+.... ..+..+. ........|.+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 977543221 12445678999999999988766 5889999998763 2222222 1234577889999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCCceEEEe---eccCCCEEEEEEcCCCCEEEEEECC-CeEEEEecCCCCCcc
Q 005096 366 HEEYFVSGSL-DGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRPGDTA 434 (715)
Q Consensus 366 ~~~~l~sgs~-DG~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl~~~~~~~ 434 (715)
++++|.++.. ...|.+|.++.......+. ..+...-.++.|++++++|+++..| ..|.+|.++...-..
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 7888777653 3478888887664444433 2233346789999999999888764 579999987654444
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=1.2e-10 Score=117.83 Aligned_cols=235 Identities=19% Similarity=0.324 Sum_probs=155.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeecCC------------CCCeEEEEEecCC--CEEEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCSC 246 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~~~~h------------~~~I~~l~~spd~--~~Las~ 246 (715)
...|.+|.|..+|++|+||+.+|.|.++.-+... ....+..| ...|..+.|..++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999644322 22223222 3568889999866 457788
Q ss_pred ECCCcEEEEECCCCeeEEE---e--cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ccCCCceEEEEE
Q 005096 247 SDDTTVKVWDFARCQEERS---L--TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKW 320 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~~~~---l--~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~~~I~sl~~ 320 (715)
+.|.+|++|.+........ + .+....|+++. +.+.+..|-.+. ..+.+.+ ..|..-|++|++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr------~p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR------LPVEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceee------ceeeccccceee------eeeeeeccccceeEeeeeee
Confidence 8999999999865333220 0 00111122221 111111111111 1122222 457888999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeE---EEEeecC-----CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGH-----RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h-----~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
+.|...++++. |-.|.+|+++-... +..++.+ ..-|++..|+|...++|+..+..|+|++.|++....+..
T Consensus 173 NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 99999888774 88999999874332 2222322 245889999998899999999999999999984322211
Q ss_pred ---------------EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 393 ---------------IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 393 ---------------~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
++..--..|.++.|+.+|+++++-+. -+|+|||++.+.+..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc
Confidence 11112246889999999999987653 689999998776644
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=4e-09 Score=112.31 Aligned_cols=237 Identities=8% Similarity=0.021 Sum_probs=154.4
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEeCCCCceEEEEeccCC-------CEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 005096 152 WTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD-D-GGAIKY 212 (715)
Q Consensus 152 ~spdg~~Latgs~----------dg~I~Iwd~~~~~~~~~l~~h~~-------~V~~l~~spdg~~L~tgs-~-dg~I~i 212 (715)
+|+|++.|+++.. +..|.|||..+.+.+..+..-.. ....+++++||++|++.. . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999887765 68899999999999988875322 234789999999998776 3 689999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeE-E---EecccCCceE-EEEEcC-CCCEE
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEE-R---SLTGHGWDVK-SVDWHP-TKSLL 285 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~-~---~l~~~~~~I~-si~~sp-dg~~L 285 (715)
+|+.+++.+..+..-. ...-+..+ +...+ +-+.||......+++ ++.. . .+......+. .-.|.+ +++++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999888775422 22222222 22222 223444444433322 1111 1 1111000000 003344 77777
Q ss_pred EEEeCCCcEEEEECCCC-----ceeEEecc-------CCCceEEEEEcCCCCEEEEEE----------CCCeEEEEECCC
Q 005096 286 VSGGKDSLVKLWDAKSG-----RELCSFHG-------HKNMVLCVKWNQNGNWVLTAS----------KDQIIKLYDIRA 343 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~-----~~~~~~~~-------~~~~I~sl~~spdg~~Lasgs----------~dg~I~iwDl~t 343 (715)
++..+ |.|.+.|+... +.+..+.. ....+.-++++++++.|++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 99999996543 22222211 122344599999999888853 125799999999
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEE
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~ 393 (715)
++.+..+.. ...+..|++++++..+|++.+ .++.|.++|..+.+.+..+
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999874 568999999995442666555 6788999999888766665
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=8.8e-10 Score=121.47 Aligned_cols=289 Identities=13% Similarity=0.171 Sum_probs=196.9
Q ss_pred EecCCCCccEEEEEEcCCC------------CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC---CC-CEE
Q 005096 138 TSLNKNRCSINRVLWTPTG------------RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH---ND-NWM 201 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg------------~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg-~~L 201 (715)
.++..|...|+.|.|.|.. -+||++...|.|.|||......+..+..|...|..++|-+ +. ..|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 3577899999999998732 2567788889999999999999999999999999999965 23 456
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEEC-----------------------
Q 005096 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDF----------------------- 257 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl----------------------- 257 (715)
++-....+|.+|+..+|+....+........|+.+.| |.+.++..+..|.|.+.+.
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 6666678999999999988877766666666677766 3445555555555544433
Q ss_pred ---------------------------------------------------CCCeeEEEecccCCceEEEEEcCCC--CE
Q 005096 258 ---------------------------------------------------ARCQEERSLTGHGWDVKSVDWHPTK--SL 284 (715)
Q Consensus 258 ---------------------------------------------------~~~~~~~~l~~~~~~I~si~~spdg--~~ 284 (715)
+-...+..+.-..+.+.-+.|-|+. ..
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 1111111111222334445565654 47
Q ss_pred EEEEeCCCcEEEEECCC----------------Cce---eEEec------------------------------------
Q 005096 285 LVSGGKDSLVKLWDAKS----------------GRE---LCSFH------------------------------------ 309 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s----------------~~~---~~~~~------------------------------------ 309 (715)
|++.-.||.+.||-.+. ++. ++.++
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 88888899999885433 110 11000
Q ss_pred ------------------------------------cCCCceEEEEEc-----------CCC-------CEEEEEECCCe
Q 005096 310 ------------------------------------GHKNMVLCVKWN-----------QNG-------NWVLTASKDQI 335 (715)
Q Consensus 310 ------------------------------------~~~~~I~sl~~s-----------pdg-------~~Lasgs~dg~ 335 (715)
+|....++.... +.+ .++|+|+..|+
T Consensus 369 ~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 369 HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred CcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 001111111111 111 25778999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC----------CCcEEEEEcCCCCceEE--EeeccCCCEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVE--IHNVHDNTVWD 403 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~----------DG~I~iwd~~~~~~~~~--~~~~h~~~V~~ 403 (715)
|.++|+.++.....+..|...|.++.|.- ...|++.+. -+.+.|-|++++..... .....+.+|..
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999999999999999999999974 444554432 23567778887754322 23445678999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
|..+..++||+..-.|.-+.+||++
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhc
Confidence 9999999999999999999999984
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.25 E-value=8.8e-09 Score=123.49 Aligned_cols=284 Identities=14% Similarity=0.197 Sum_probs=184.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC---------------C--------CceEEEEec---------------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ---------------S--------FNFEMILQA--------------- 184 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~---------------~--------~~~~~~l~~--------------- 184 (715)
-.+.|.|++||||+..|+..+.+++|.+.+.. . |+....|.+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 45689999999999999999999988876411 0 011111110
Q ss_pred ---------cCCCEEEEEEcCCCCEEEEEeC---C---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-
Q 005096 185 ---------HDHAIRSMVWSHNDNWMVSGDD---G---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD- 248 (715)
Q Consensus 185 ---------h~~~V~~l~~spdg~~L~tgs~---d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~- 248 (715)
.+..-..|+|--||.++|+.+. + ..|+||+-+ +.+..+-....+--.+++|.|.|++||+...
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 2334567899999999998764 2 578999876 5544444444444567899999999998765
Q ss_pred --CCcEEEEECCCCeeEEEe----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEec-cCCCceEEEE
Q 005096 249 --DTTVKVWDFARCQEERSL----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFH-GHKNMVLCVK 319 (715)
Q Consensus 249 --Dg~V~iwdl~~~~~~~~l----~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--~~~~~-~~~~~I~sl~ 319 (715)
...|.+|.- +|-.-..| ......|..++|+.|+.+|++...|. |.+|-..+..- ...+. .....+..+.
T Consensus 278 ~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 345666663 33222222 23456799999999999999988665 99998877542 12222 1233355599
Q ss_pred EcC-CCCEEEEEECCCeEEEEECC----CC--------eEEEEee-----------------------cCCCCeEEEEEc
Q 005096 320 WNQ-NGNWVLTASKDQIIKLYDIR----AM--------KELESFR-----------------------GHRKDVTALAWH 363 (715)
Q Consensus 320 ~sp-dg~~Lasgs~dg~I~iwDl~----t~--------~~~~~~~-----------------------~h~~~V~~l~~s 363 (715)
|++ +...|.+.+.+|.+..+++. .+ ..+..+. .....|.+++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 998 44567777776766555431 11 0111111 235679999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCce--------EEE---------eeccCCCEEEEEEcCCCCEEEEEECC---CeEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQ--------VEI---------HNVHDNTVWDLAWHPIGYLLCSGSND---HTTK 423 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~--------~~~---------~~~h~~~V~~l~~spdg~~L~sgs~D---g~I~ 423 (715)
+ +...+++-..||.|.+|........ ..+ .......+..++|..+..+++....+ ..+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 8 5666888899999999985433211 011 01123467889998888777776665 6788
Q ss_pred EEecCCC
Q 005096 424 FWCRNRP 430 (715)
Q Consensus 424 iWdl~~~ 430 (715)
++++...
T Consensus 515 ~~~~~~~ 521 (928)
T PF04762_consen 515 LVDIDDS 521 (928)
T ss_pred EEEeccC
Confidence 8887443
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.9e-11 Score=129.46 Aligned_cols=240 Identities=21% Similarity=0.347 Sum_probs=170.3
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCc
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~ 251 (715)
+..+.+|...|..++-..+.+.+++++.|++|++|.++. ..+..++..|+..|.++.|..+.++++++ |+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345778999999998877889999999999999998754 23667778999999999999988877765 788
Q ss_pred EEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEec-----cCCCceEEEEE
Q 005096 252 VKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVS-GGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKW 320 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L~s-gs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~ 320 (715)
|.+||--.++.+.... +..+.|.|+.-- +..+++. ++...+|+++|.++.+-+..++ +.+..+++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999975555444221 122334444321 3344444 4778999999999987766664 33466899999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE-EEcCCCCceEEEeeccCC
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH-WLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i-wd~~~~~~~~~~~~~h~~ 399 (715)
.+.|++++++-.+|+|.+.|.++|+.+..++..+.....++- | .+..|+....|.++.+ |..-.+........ ...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p-sdq~L~~saldHslaVnWhaldgimh~q~kp-ppe 961 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDGIMHLQDKP-PPE 961 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCCeeeeccCC-CCc
Confidence 999999999999999999999999999988876666655553 2 4566777777888887 76544322111110 011
Q ss_pred CEEEEEEc-CCCCEEEEEECCCeEEEEec
Q 005096 400 TVWDLAWH-PIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 400 ~V~~l~~s-pdg~~L~sgs~Dg~I~iWdl 427 (715)
+. -|. .-|..|+++.....+.+|.-
T Consensus 962 pa---hflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 962 PA---HFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ch---hhhhccCceeEEeccCcEEEEEec
Confidence 11 111 12566888888888888853
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=8.6e-09 Score=125.77 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceEEEEec-c-------------CCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 005096 148 NRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQA-H-------------DHAIRSMVWSHNDNWMVSGDD-GGAIK 211 (715)
Q Consensus 148 ~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h-------------~~~V~~l~~spdg~~L~tgs~-dg~I~ 211 (715)
..++++.+ ++++++-+.++.|++||... +.+..+.. . -..-..|+++++++.|++++. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788875 55666667788899999764 44433332 1 113478899988887766654 57799
Q ss_pred EEeCCCCceeeeecC---------C-------CCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEeccc-----
Q 005096 212 YWQNNMNNVKANKSA---------H-------KESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGH----- 269 (715)
Q Consensus 212 iwd~~~~~~~~~~~~---------h-------~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~----- 269 (715)
++|+.++........ . -..-.++++++ ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 999877654322110 0 11335789998 4555666677899999998776443 22111
Q ss_pred ----------CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEecc-------------C--------CCceEE
Q 005096 270 ----------GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG-------------H--------KNMVLC 317 (715)
Q Consensus 270 ----------~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~-------------~--------~~~I~s 317 (715)
......|+|+++++.| ++-+.++.|++||++++.......+ . -..-..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1234579999999844 4555678999999987653211100 0 112358
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-------------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 318 l~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-------------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
++++++|+++++-+.+++|++||..++........ .-.....|++++ +++++++.+.+++|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 89999999888888899999999988766533211 113567899998 6788888899999999999
Q ss_pred CCCCc
Q 005096 385 GHETP 389 (715)
Q Consensus 385 ~~~~~ 389 (715)
++...
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 87654
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=1.5e-09 Score=106.52 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=149.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc-eEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 233 (715)
..+||.|+..|.+.+|...+.+ ..+....|...|+-+.-..| .-.+..++.|.++++.+++.+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 4579999999999999988654 34444555554443322112 335667889999999988776555444333345889
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCee--EE-EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---
Q 005096 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQE--ER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--- 307 (715)
Q Consensus 234 l~~spd~~~Las~s~Dg~V~iwdl~~~~~--~~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--- 307 (715)
+++++|++++++.++...|..|.+.+..+ ++ ......+.-.+..|+.....+|++..||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 99999999999999999999999854322 22 2233445567889999999999999999999999997543322
Q ss_pred --eccCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEeecCCC--------CeEEEEEcc
Q 005096 308 --FHGHKNMVLCVKWNQNG--NWVLTASKDQIIKLYDIRAMKELESFRGHRK--------DVTALAWHP 364 (715)
Q Consensus 308 --~~~~~~~I~sl~~spdg--~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~--------~V~~l~~sp 364 (715)
-..|++.++.+.|++.| ++|+..-.-+.+.|.|+|+++....+...+. .|..-.|+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 23578899999999855 4566666678999999999887665543222 266666665
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=5.4e-11 Score=140.66 Aligned_cols=197 Identities=19% Similarity=0.312 Sum_probs=159.5
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~ 261 (715)
+.+-..|.++.-++..-+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3345678888888888999999999999999988776555443 344789999999999999999999999999987 56
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCC--CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs---~Dg~I~iwDl~s--~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
.......|.....++.|-. ..+++++ +++.+.+||..- .+.+.. +.|...++++++.|.-.+|++|+.+|.|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 6677778888888888874 6666654 578899999753 222222 7799999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+|||++..+.+..+.. ++ ...+|++++..|.|+||++..-..+..+.
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999998888777764 32 57899999999999999998765444443
No 281
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.21 E-value=6.5e-09 Score=114.74 Aligned_cols=259 Identities=15% Similarity=0.053 Sum_probs=168.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCe---
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I--- 231 (715)
++..|++++.+|.|+.+|.++++.+...........+... .+..+++++.++.|..+|.++++.+.........+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3557888889999999999999988776644322222222 24567778888999999999998877664321111
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-------ceEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 005096 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWHP--TKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 232 --~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-------~I~si~~sp--dg~~L~sgs~Dg~I~iwDl~ 300 (715)
..-.+ .+..++.++.++.|..+|.++++.+........ ....+..+| .+..|++++.++.+..+|++
T Consensus 197 ~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 197 GESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11111 234577788899999999988876654431110 011111111 24567778889999999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
+++.+.+.... ....+.. ++..|++++.+|.|..+|.++++.+....... ....+..+ .+..|+.++.||.|
T Consensus 275 tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEE
Confidence 99887665421 1122222 46678888899999999999998876554221 22233333 25667788999999
Q ss_pred EEEEcCCCCceEEEeeccCCCEE-EEEEcCCCCEEEEEECCCeEEEEec
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++|..+++.+.+.... ...+. ...+. +..|++++.||.|+.+++
T Consensus 348 ~~ld~~tG~~~~~~~~~-~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVD-SSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcC-CCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 99999888766555432 22232 22232 457888899999988864
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=1.7e-08 Score=123.13 Aligned_cols=238 Identities=12% Similarity=0.099 Sum_probs=158.5
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeecC--------------CCCCeEEEEEecCCCEEEEEEC-CCcEE
Q 005096 190 RSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA--------------HKESVRDLSFCRTDLKFCSCSD-DTTVK 253 (715)
Q Consensus 190 ~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~~~~--------------h~~~I~~l~~spd~~~Las~s~-Dg~V~ 253 (715)
..++++.+ ++++++-..++.|++||..... +..+.. .-..-..|++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788765 5566666778899999976543 322221 1123578899988887666654 57899
Q ss_pred EEECCCCeeEEEeccc-----------------CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccC----
Q 005096 254 VWDFARCQEERSLTGH-----------------GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---- 311 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~-----------------~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~---- 311 (715)
++|+.++. +.++.+. -..-..|+|++ ++.++++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 3333211 11235799999 4556666677889999999876543 22110
Q ss_pred -----------CCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeec-------------C--------CCCeE
Q 005096 312 -----------KNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG-------------H--------RKDVT 358 (715)
Q Consensus 312 -----------~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~-------------h--------~~~V~ 358 (715)
-...+.|+|++++++|+++ +.++.|++||++++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1234579999999865554 4668999999987653211100 0 11245
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.+++++ +++++++.+.+++|++||..+.......-.+ .-.....|+++++|+++++-+.++.|++||
T Consensus 808 Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 888988 6778888889999999999765433221111 122567899999999999999999999999
Q ss_pred cCCCC
Q 005096 427 RNRPG 431 (715)
Q Consensus 427 l~~~~ 431 (715)
++...
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 97644
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.6e-09 Score=119.52 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=200.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC------------CEEEEEeCCCcEEEEe
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND------------NWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg------------~~L~tgs~dg~I~iwd 214 (715)
-.+++|++.| +||.|+.+ .|.|.|..+.+.+..+..|...|+.+.|.+.. -+|++++..|.|.|||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 6788999988 67777654 69999999999999999999999999998721 2567888889999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEec---CC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEe
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~sp---d~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs 289 (715)
......+..+..+.+.|.+++|-+ +. ..|++-....+|.+|+..+++...+.........|+.++| |.+.|..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999998889999999999999976 23 4566667778999999999999888776666777899988 445666666
Q ss_pred CCCcEEEEECCC-------CceeEEeccCCC------------c-------------eEEEEEcCCCCEEEEEECCCeEE
Q 005096 290 KDSLVKLWDAKS-------GRELCSFHGHKN------------M-------------VLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 290 ~Dg~I~iwDl~s-------~~~~~~~~~~~~------------~-------------I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
..|.|.+.+.-. ++.......|.+ . ...++|+|.-+.++.......+.
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 667777665421 222222222211 0 12356788666666666788999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccC-CCCEEEEEeCCCcEEEEEcCCCCceEEEeec-----cCCCEEEE-------
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----HDNTVWDL------- 404 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~-~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-----h~~~V~~l------- 404 (715)
|+|++-..++.......+.+.-+.|-|+ ..+.|++.-.||.+.||-.+......+.... ....+.++
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r 335 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR 335 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcc
Confidence 9999988888888777777777888774 3457889999999999976553322222111 11122222
Q ss_pred ----EEcCC-CCEEEEEECCCeEEEEecCC
Q 005096 405 ----AWHPI-GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 405 ----~~spd-g~~L~sgs~Dg~I~iWdl~~ 429 (715)
...|. ...++..-.+|.+.+|.+..
T Consensus 336 p~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 336 PVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 22333 33444445678889998864
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.8e-08 Score=111.34 Aligned_cols=211 Identities=6% Similarity=-0.057 Sum_probs=132.0
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCE-EEEEeC---CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCC
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~ 241 (715)
..|.+-|.+..+ .+.+.... .+....|++|++. ++..+. +..|.++|+.+++..... ...+.+....|++|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 356665655443 33333333 7778999999984 554333 356888899887665544 3455566788999998
Q ss_pred EEEEEE-C--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCce
Q 005096 242 KFCSCS-D--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMV 315 (715)
Q Consensus 242 ~Las~s-~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~~~~~~~~I 315 (715)
.|+... . +..|+++|+.+++. ..+..+........|+|||+.|+..+.. + .|+++|+.+++..+.... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 776543 3 34688889877654 3444344334467899999977776642 3 588889987766443322 111
Q ss_pred EEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCc--EEEEE
Q 005096 316 LCVKWNQNGNWVLTASKD---------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWL 383 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~d---------g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~--I~iwd 383 (715)
...|+|||++|+..+.. ..|.+.|+.+++. ..+... .......|+| +++.|+..+ ..+. |.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC-CCCEEEEEEccCCcEEEEEEe
Confidence 24899999999877643 3688889887764 333322 2334688999 555544433 3333 44445
Q ss_pred cCC
Q 005096 384 VGH 386 (715)
Q Consensus 384 ~~~ 386 (715)
++.
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 533
No 285
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=9.5e-09 Score=113.42 Aligned_cols=263 Identities=8% Similarity=0.000 Sum_probs=168.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC----------CEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AIR-SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----------~V~-~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.+..|++++.+|.|.-+|.++++.+-....... .+. .+.. ++..+++++.++.|..+|.++++.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 355788888889999999999887766543221 000 1122 356777888899999999999988776
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-----~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
............+ .+..+++++.++.|..+|.++++.+-.+......+ .+-... +..+++++.++.|..+|
T Consensus 146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEE
Confidence 6543322222222 24567778889999999999999887765321111 111111 34577788899999999
Q ss_pred CCCCceeEEeccCCC-------ceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 299 AKSGRELCSFHGHKN-------MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 299 l~s~~~~~~~~~~~~-------~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
.++++.+........ ....+..+| .+..|++++.++.+..+|..+++.+.+.... ....+.. .+..
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~---~~~~ 296 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV---DGGR 296 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE---ECCE
Confidence 999987765431110 011111122 3556777888999999999999987765422 1122222 4566
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
|+.++.+|.|..+|..+++.+.+..........+..+. +.+|+.++.||.|.+.|.++.
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCCC
Confidence 77778899999999988876554322111122222232 557888999999999988653
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.17 E-value=4.6e-08 Score=100.60 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=147.6
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC-
Q 005096 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA- 226 (715)
Q Consensus 149 ~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~- 226 (715)
+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++...+..|+++..+ .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 578887 66666666678999999998876544 22222 6777777333555555554 455669888865544432
Q ss_pred ----CCCCeEEEEEecCCCEEEEEECC--------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE-EEeCCCc
Q 005096 227 ----HKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSL 293 (715)
Q Consensus 227 ----h~~~I~~l~~spd~~~Las~s~D--------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~-sgs~Dg~ 293 (715)
.....+++++.++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34678899999999977776653 557777776 44433333 345678999999999776 4566778
Q ss_pred EEEEECCCCce-------eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc-cC
Q 005096 294 VKLWDAKSGRE-------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PF 365 (715)
Q Consensus 294 I~iwDl~s~~~-------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s-p~ 365 (715)
|..||+..... +..+....+....+++..+|++.++....+.|.++|.+ ++.+..+......+++++|. ++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 99998863221 12223223357889999999988888889999999988 99888888776799999995 42
Q ss_pred CCCEEEEE
Q 005096 366 HEEYFVSG 373 (715)
Q Consensus 366 ~~~~l~sg 373 (715)
.+.+++|.
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 34444443
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=4.5e-09 Score=103.28 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=155.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEE-ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~-spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~ 274 (715)
...+|+.|+..|...+|...+++....+ ..+...|+-+.- +-....+..++.|.++++.+++-+.....+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4568999999999999998876543332 233333322211 11223477888899999998865443333322223488
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-c-eeE-EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSG-R-ELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-- 349 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~-~-~~~-~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-- 349 (715)
++++++|++++++.++...|..|.+... + .++ ......+.-.+.+|+.....+|+++.||++.|||+|.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988643 2 233 2233445567889999999999999999999999997654332
Q ss_pred ---eecCCCCeEEEEEccCCC-CEEEEEeCCCcEEEEEcCCCCceEEEeec------cC-CCEEEEEEcCCCCEEEEEEC
Q 005096 350 ---FRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHNV------HD-NTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 350 ---~~~h~~~V~~l~~sp~~~-~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------h~-~~V~~l~~spdg~~L~sgs~ 418 (715)
-..|.+.+..+.|++.+. ++|+..-.-+.+.+.|+++......+... |. ..|....|+.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 235888999999997332 35555555678999999887655443321 22 23777778777766666554
Q ss_pred CCeEEEEecC
Q 005096 419 DHTTKFWCRN 428 (715)
Q Consensus 419 Dg~I~iWdl~ 428 (715)
+ .+.-|+++
T Consensus 323 ~-~~ae~ni~ 331 (344)
T KOG4532|consen 323 L-QGAEYNIL 331 (344)
T ss_pred h-hhheeecc
Confidence 3 33445544
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.4e-08 Score=112.20 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=128.9
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCC--CcEEEEeCCCC
Q 005096 146 SINRVLWTPTGRR-LITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDG--GAIKYWQNNMN 218 (715)
Q Consensus 146 ~I~~l~~spdg~~-Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~d--g~I~iwd~~~~ 218 (715)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|++||+.|+. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5778999999985 6654443 569999998887665544 5566777899999987754 3334 45777788777
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC----
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---- 291 (715)
+... +..+........|++|++.|+..+.. + .|+++|+++++..+.... .. ....|+|||+.|+.....
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence 6443 33333334456899999988877643 2 588888887766443322 11 135899999988877654
Q ss_pred -----CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCC
Q 005096 292 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRA 343 (715)
Q Consensus 292 -----g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t 343 (715)
..|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .|.++++..
T Consensus 344 ~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2688889887764 344332 2334689999999888766432 466667653
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.14 E-value=1.7e-08 Score=102.81 Aligned_cols=218 Identities=11% Similarity=0.011 Sum_probs=145.0
Q ss_pred CCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 165 SGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
+|.|..||..+++.+...... .....+..+ .+++++++++.++.|..||..+++.+..+.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 688999999999988887642 122222222 2567788888999999999999998877765 22222212 224566
Q ss_pred EEEEECCCcEEEEECCCCeeEEEe-cccC---CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc----
Q 005096 243 FCSCSDDTTVKVWDFARCQEERSL-TGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---- 314 (715)
Q Consensus 243 Las~s~Dg~V~iwdl~~~~~~~~l-~~~~---~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~---- 314 (715)
+++++.++.|+.+|..+++.+... .... .........-+++.++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999998874 3221 11122222223788888888999999999999998877643322
Q ss_pred ------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 315 ------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 315 ------I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+ ..+.+. ++ .+++++.++.+..+|+++++.+.... ...+..+. .. .+..|++++.++.|.+||++++
T Consensus 159 ~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~-~~-~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 159 ISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLP-SV-DGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECE-EC-CCTEEEEEETTTEEEEEETTTT
T ss_pred eeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCc-ee-eCCEEEEEeCCCEEEEEECCCC
Confidence 1 223333 44 77777777754444999999775333 33333322 22 5667777779999999999988
Q ss_pred CceE
Q 005096 388 TPQV 391 (715)
Q Consensus 388 ~~~~ 391 (715)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 7554
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=6.7e-10 Score=121.65 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=187.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeee-cCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECC---
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANK-SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFA--- 258 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~-~~h~~~I~~l~~spd~--~~Las~s~Dg~V~iwdl~--- 258 (715)
++.+..+.+++.|+-+++++.-|. .+.|+... ..-..+ ....-.|.++.|++.. .+-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 567788899999999998888764 45565542 222221 2223456777787643 445555556667789983
Q ss_pred CCeeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 259 RCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 259 ~~~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
+......+.+|...|+.+.|++.. ..|++++.|..+..||+++- ..+..+..-......|+|+-..-.+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 344556677899999999999865 48899999999999999975 4556666566677889999855556666778899
Q ss_pred EEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 337 KLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 337 ~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
++||++.+ ..+..+++|...|+.+.|.......+.+++.||+|++||.+......+.....+..|+.-.+.|-|+-.++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999876 46788899999999999987777789999999999999998776665555556778888888886543332
Q ss_pred --EECCCeEEEEecCCCCCcccc----cccccCCccccceeeEEeecCCC
Q 005096 416 --GSNDHTTKFWCRNRPGDTARD----KFNMGQNQGYGEQNAVFAGRMPG 459 (715)
Q Consensus 416 --gs~Dg~I~iWdl~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~ 459 (715)
--.+..|.+++.+... ..+. ...+....|+++.+.+|.++..+
T Consensus 263 mp~~G~n~v~~~~c~n~d-~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSD-LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred ccccCCeeeeeccccchh-hhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 2223355555443222 1211 12223345556666666555433
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=4.4e-08 Score=103.07 Aligned_cols=225 Identities=14% Similarity=0.171 Sum_probs=157.0
Q ss_pred ecCCCCc--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec---c---C--CCEEEEE----Ec-CCCCEEEE
Q 005096 139 SLNKNRC--SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA---H---D--HAIRSMV----WS-HNDNWMVS 203 (715)
Q Consensus 139 ~l~~H~~--~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~---h---~--~~V~~l~----~s-pdg~~L~t 203 (715)
.++.|++ .-.+-..+.||++|+.. ..|.|++||-++.++.+.-.+ . + ..+.-.. |+ -+|++++.
T Consensus 259 DlrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~ 337 (668)
T COG4946 259 DLRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL 337 (668)
T ss_pred hhhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE
Confidence 3444543 23344456688877654 456799999877655443221 0 0 0111111 22 16788888
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCeeEEEecccCCceEEEEEcCCC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg 282 (715)
.+. |...|.+...+-.+. ..+...|.-..+..+.+.++.|..|| .|-|+|.++++. ..+...-+.|.++..+++|
T Consensus 338 VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 338 VSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred Eec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCC
Confidence 876 667777665555444 35677788888888888999999999 899999988754 4445567789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEEEEeecCCCCeE
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg----~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
++++++.....|.++|+++++....-+...+-|+.+.|++++++||.+--+| .|+|+|+.+++...... ....=.
T Consensus 414 K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Df 492 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDF 492 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccccc
Confidence 9999998888999999999987665566677899999999999999887666 68999999877654432 222223
Q ss_pred EEEEccCCCCEE
Q 005096 359 ALAWHPFHEEYF 370 (715)
Q Consensus 359 ~l~~sp~~~~~l 370 (715)
+-+|.+ ++++|
T Consensus 493 sPaFD~-d~ryL 503 (668)
T COG4946 493 SPAFDP-DGRYL 503 (668)
T ss_pred CcccCC-CCcEE
Confidence 445555 44443
No 292
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.1e-09 Score=110.56 Aligned_cols=250 Identities=16% Similarity=0.249 Sum_probs=166.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCCce
Q 005096 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVS-----GDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg--~~L~t-----gs~dg~I~iwd~~~~~~ 220 (715)
.++.|+.|..+. +--..+.|.+|++.+.+.+. -..|...|+.+.+++.. ..||+ .+.-+.|+||.......
T Consensus 129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhh-hhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 588888887543 33345679999988744332 33467889999999873 33443 24446799998763221
Q ss_pred ---eeeecCCCCCeEEEEEecCCCE-EEEEE--CC---------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 221 ---KANKSAHKESVRDLSFCRTDLK-FCSCS--DD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 221 ---~~~~~~h~~~I~~l~~spd~~~-Las~s--~D---------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+....-....-..+.|+.-+.- |+.++ -| .+++++++...+....+. ..+.|.++.|+++++-+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence 1111122233345667765543 22222 23 468888887444444443 57899999999999866
Q ss_pred EEE--eCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 286 VSG--GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 286 ~sg--s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+++ -.-.++.|||++ ++.+..+- .+.-+++-|+|.|++|+.++- .|.|.|||+.+.+++.+++..+ .+-+
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~ 360 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVF 360 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEE
Confidence 554 456789999988 56666553 566688999999999998774 4789999999988888887544 4567
Q ss_pred EEccCCCCEEEEEeC------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 361 AWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
.|+| ++.+|+|++. |+.++||++.....-.+.+ ....+.++|-|-
T Consensus 361 eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f---~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 361 EWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF---KSELLQVEWRPF 411 (566)
T ss_pred EEcC-CCcEEEEEeccccEEecCCeEEEEecCceeehhhh---hHhHhheeeeec
Confidence 8999 7888887764 6889999985432211111 115777888754
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.08 E-value=8.2e-08 Score=97.82 Aligned_cols=215 Identities=12% Similarity=-0.015 Sum_probs=142.2
Q ss_pred CCCcEEEEeCCCCceeeeecCCCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC
Q 005096 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~--~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~ 283 (715)
.+|.|..||..+++.+....... .+.... ...++.++++++.++.|+.||..+++.+..+............ ++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETT
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--ccc
Confidence 36889999998888877764421 122222 3336677888899999999999999988777652221112222 356
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEe-ccCC---CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe--
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSF-HGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV-- 357 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~---~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V-- 357 (715)
.+++++.|+.|+.+|+++|+.+... .... ..........+++.++++..++.|..+|+++|+.+..+.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778889999999999998884 3221 112222333347888999889999999999999998887644221
Q ss_pred ---------EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 358 ---------TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 358 ---------~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..+.+. ++ .++.++.++.+..+|+.++....... ...+..+ ...++..|++++.++.|.+||++
T Consensus 158 ~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 158 PISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred ceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 222222 33 77777778764444998887554222 2233332 34567788888899999999996
Q ss_pred CC
Q 005096 429 RP 430 (715)
Q Consensus 429 ~~ 430 (715)
..
T Consensus 231 tG 232 (238)
T PF13360_consen 231 TG 232 (238)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=2.1e-10 Score=127.41 Aligned_cols=213 Identities=15% Similarity=0.278 Sum_probs=159.8
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--cEEE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKY 212 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg--~I~i 212 (715)
.-.++++.|+...+|++|+-+.++|++|+..|.|++|++.++........|...|+.|.=+.||..+++.+... ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999998887665443 4689
Q ss_pred EeCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec----ccCCceEEEEEcCCCCEEEE
Q 005096 213 WQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 213 wd~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~----~~~~~I~si~~spdg~~L~s 287 (715)
|+... +..+..+ ..-.++.|+.....-+.|+....+.|||+.++..+.++. +....-++..|+|+.++++
T Consensus 1172 W~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 98765 2222222 344577887654444555555679999999987766532 1223346888999988776
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
.|| .+||++..+.+..|...... ..-.|+|+|+-++.-+ .|||+++.+.++....-+ -+.|.|+.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEecc
Confidence 455 47999998888888755532 3346999999888776 499999988877654322 24556665
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=4.2e-07 Score=93.45 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=144.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 190 RSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 190 ~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
.+++|.+ ++.++++-...+.|..|+..++........ . ...+++...+..|+++..++ +.++|+.+++....+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-G--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-S--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-C--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 3678887 566666766789999999988765442222 2 77778874345666666654 56669988765544433
Q ss_pred -----cCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE-EECCC
Q 005096 269 -----HGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT-ASKDQ 334 (715)
Q Consensus 269 -----~~~~I~si~~spdg~~L~sgs~D--------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las-gs~dg 334 (715)
.....++++++++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|++ -+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34568899999999977766543 457777777 44433333 3455789999999997765 45678
Q ss_pred eEEEEECCCC-e---EEE---EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 335 IIKLYDIRAM-K---ELE---SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 335 ~I~iwDl~t~-~---~~~---~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
.|..||+... . ... .+....+..-.+++.. +++++++....+.|.++|-+ ++.+..+.. ....+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIEL-PVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE--SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcC-CCCCEEEEEEE
Confidence 8999998532 1 112 2222223478899998 78888888889999999987 544444443 34589999994
Q ss_pred -CCCCEEEEEE
Q 005096 408 -PIGYLLCSGS 417 (715)
Q Consensus 408 -pdg~~L~sgs 417 (715)
++.+.|++.+
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 5555555443
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=2.8e-09 Score=110.46 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=114.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc---EEEEeCCCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA---IKYWQNNMN 218 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~---I~iwd~~~~ 218 (715)
.+..+..++++++||++..+....++++.... +...+. -...-+++.|..+...+.++...|. +.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556677788888888887776666654432 222222 2233345555556666655544444 455555443
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
.. ..+-+|-.-+.+++|++|+++|+++..|..|+|-.......+..+ .+|..-|..+++.+ +..|++++.|++|++|
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 33 334589999999999999999999999999999887655555444 56999999999985 4568999999999999
Q ss_pred ECCCCceeEEec
Q 005096 298 DAKSGRELCSFH 309 (715)
Q Consensus 298 Dl~s~~~~~~~~ 309 (715)
|+++++++.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999986664
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.04 E-value=3.1e-09 Score=104.10 Aligned_cols=253 Identities=16% Similarity=0.198 Sum_probs=146.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------------EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF------------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~------------~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
|+.+.++-+- .|+++..++.+......++.+ .+.+..|.+.-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555555443 466666655554444332222 222333333322223333467899999999999998
Q ss_pred CCCCc-eeeeecCCCCCeEEEEEecCCCEEEEEE-----CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC-CEEEE
Q 005096 215 NNMNN-VKANKSAHKESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVS 287 (715)
Q Consensus 215 ~~~~~-~~~~~~~h~~~I~~l~~spd~~~Las~s-----~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg-~~L~s 287 (715)
.+... ....+......-.+.+++..++.|.++. .-+..++|+++-.+.+..-......|.+++-+|.. +++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 76521 1111111111222334444455444332 12346667765444333222233458999988865 47788
Q ss_pred EeCCCcEEEEECCCCce-eEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 288 GGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~-~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
|+.||.+.+||.++... +..++.|+..|+.+-|+| ++..|+++++||.+.-||..+ +.+ ++++
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l-------------~i~~- 262 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFL-------------SISN- 262 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceE-------------EecC-
Confidence 89999999999998643 344678999999999999 678999999999999999764 111 1111
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc-eE---EEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETP-QV---EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~-~~---~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
....+..|--....+ .+ .++......|+++... |..|++|++-+.|++++
T Consensus 263 ---------~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 263 ---------QASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ---------ccccccccccCCcccceEeeeccccccceeeeeeecc--CceEEeccccceEEEec
Confidence 112333442211111 11 1222223356666554 77899999989998875
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.6e-09 Score=107.77 Aligned_cols=280 Identities=16% Similarity=0.136 Sum_probs=188.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~ 217 (715)
-|++.|+.+..+. .+++++++.||.++.|.-.. -+.++.+..|...|.+++.+-++.++.+.+. |..++++|++.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3777788776664 45899999999999997443 3456667788889999999999999999777 99999999887
Q ss_pred Cceeeeec--CCCCCeEEEEEecCC-C-EE-EEEECCCcEEEEECCCC--eeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 218 NNVKANKS--AHKESVRDLSFCRTD-L-KF-CSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 218 ~~~~~~~~--~h~~~I~~l~~spd~-~-~L-as~s~Dg~V~iwdl~~~--~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
-.....++ .....+.++ .++.. . .| ++.-.++.|.|+|-... .....-.-|...|.++.+++.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 65543332 222222221 22221 1 23 33345789999996433 333444568899999999999999999999
Q ss_pred CCcEEEEECCC------CceeE---------EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---
Q 005096 291 DSLVKLWDAKS------GRELC---------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--- 352 (715)
Q Consensus 291 Dg~I~iwDl~s------~~~~~---------~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--- 352 (715)
.|.|..|.... .+... .+...+...+++.|++++..+.+-+.|..|+++++++++.+..+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998762 22211 2223456789999999999999999999999999999876554321
Q ss_pred -----------------------------CCC-CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec------
Q 005096 353 -----------------------------HRK-DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------ 396 (715)
Q Consensus 353 -----------------------------h~~-~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------ 396 (715)
+.. .-+.+.|.. .+++|+.++--| |++.++.++.....+-..
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~ 322 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFT 322 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhh
Confidence 111 134556665 677877776543 667777665433221110
Q ss_pred -----------cC-------CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 397 -----------HD-------NTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 397 -----------h~-------~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
+. +.--.+.+.+|-.+++++-....+++|
T Consensus 323 ~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 323 RLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 00 000112355566778888888888888
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.01 E-value=5.8e-08 Score=103.26 Aligned_cols=253 Identities=14% Similarity=0.197 Sum_probs=173.5
Q ss_pred EEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC
Q 005096 169 TLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 169 ~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~ 248 (715)
.+|+..+......+...+-.+..++||+.|.+|++.... .|.+|.-.....+..+ ....|..+.|+|++++|++-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ecCCceecccCcccceeeeecc
Confidence 456666655555565567789999999999999877654 5889987776644443 3456899999999999998654
Q ss_pred C---------------CcEEEEECCCCeeEEEecccCCc--eE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 249 D---------------TTVKVWDFARCQEERSLTGHGWD--VK-SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 249 D---------------g~V~iwdl~~~~~~~~l~~~~~~--I~-si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
. +.+.+||+.++..+..+...... .+ -+.|+-++++++-. ....|+|+++...-....+..
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~ 170 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKN 170 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhh
Confidence 3 34999999999999888766555 45 67888888877655 335699999732211112221
Q ss_pred -CCCceEEEEEcCCC--CEEEE-----EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE-Ee-------
Q 005096 311 -HKNMVLCVKWNQNG--NWVLT-----ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS-GS------- 374 (715)
Q Consensus 311 -~~~~I~sl~~spdg--~~Las-----gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-gs------- 374 (715)
....|...+|+|.+ ..|++ ...++.++||.+...+.+.+.......-..+.|.. .+++|++ .-
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNK 249 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeeccc
Confidence 13568888999853 34453 34677999999987777666555555556788888 4444332 11
Q ss_pred ---CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 005096 375 ---LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 428 (715)
Q Consensus 375 ---~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~Dg~I~iWdl~ 428 (715)
.+..++|+++......+.. ...+.|.+++|.++++.+++.+ .+-.+.++|+.
T Consensus 250 syfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred ceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccc
Confidence 1346788888754443333 4578999999999887766655 45666666664
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.00 E-value=5.6e-07 Score=88.58 Aligned_cols=263 Identities=11% Similarity=0.064 Sum_probs=149.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 234 (715)
-|++++.|+.+|.+++.+.++++....+...+.--.......++.+|..++.|+..+..|..+...+...+.......+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 46789999999999999999998777766543322233456688999999999999999999988877766555555555
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEE--EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKS--VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~s--i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
++.+-...|+.+...|.|.-...+... .+.... ..+.|.+ ++. +..+..++-||.+.-+| .+|+.+..+.
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~- 215 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA- 215 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-
Confidence 666644556666667766666555441 111111 1122221 122 34455666677777777 5566665544
Q ss_pred CCCceEE-EEEc-CCCCEEEEEECCC--------eEEEEECCCCeEEEEeecCCCCeEEEEEcc---CCCCEEEEEeCCC
Q 005096 311 HKNMVLC-VKWN-QNGNWVLTASKDQ--------IIKLYDIRAMKELESFRGHRKDVTALAWHP---FHEEYFVSGSLDG 377 (715)
Q Consensus 311 ~~~~I~s-l~~s-pdg~~Lasgs~dg--------~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp---~~~~~l~sgs~DG 377 (715)
..+.|.. -+-+ |....|..+.++. .-.+|...++.....+...+- ...++. .+.++|..++.||
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l---~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKL---RFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCccc---ceeccCCCCcchhhhhhhcCCC
Confidence 2222211 1111 2223333333322 233566666544333221110 111111 1356778889999
Q ss_pred cEEEEEcCCCCceEEEeeccCC---CEEEEEEc------CC--CCEEEEEECCCeEEEEecCC
Q 005096 378 SIFHWLVGHETPQVEIHNVHDN---TVWDLAWH------PI--GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~s------pd--g~~L~sgs~Dg~I~iWdl~~ 429 (715)
++.|..++..-. ++ ..|.+ .++.+..+ |- +..|+.|+.|..|+-||++.
T Consensus 293 kv~il~~~~sl~--~~-~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 293 KVMILMTSKSLA--EI-SSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred cEEEEEeccccc--cc-ccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 998885543311 11 11222 23322221 11 24578889999999999864
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.99 E-value=6e-07 Score=92.63 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=159.0
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCceEEEEeccCCCEE--EEEEcCCCCEEEEEeC-----CCcEEEEeCC
Q 005096 146 SINRVLWTP-TGRRLITGSQSGE-FTLWNGQSFNFEMILQAHDHAIR--SMVWSHNDNWMVSGDD-----GGAIKYWQNN 216 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latgs~dg~-I~Iwd~~~~~~~~~l~~h~~~V~--~l~~spdg~~L~tgs~-----dg~I~iwd~~ 216 (715)
+...++.+| +...++.+-.-|+ +.+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 5566777777765 67899999998888776554432 4689999999998644 4889999998
Q ss_pred -CCceeeeecCCCCCeEEEEEecCCCEEEEEEC------------------CCcEEEEECCCCeeEEE--e--cccCCce
Q 005096 217 -MNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------------------DTTVKVWDFARCQEERS--L--TGHGWDV 273 (715)
Q Consensus 217 -~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~------------------Dg~V~iwdl~~~~~~~~--l--~~~~~~I 273 (715)
....+..+..+.-.-..+.+.+|++.|+++.. +-+|.+.|..+++.+.. + ..|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 55677777777767778889999988877632 23466677788887766 3 3377789
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEEec-------cCCCceEEEEEcCCCCEEEEEE-CCCeEEE
Q 005096 274 KSVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKL 338 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~-------I~iwDl~s~~~~~~~~-------~~~~~I~sl~~spdg~~Lasgs-~dg~I~i 338 (715)
+.++++.+|..++..-..|. |.+++.. +.+..+. .....|-+|+++.++.++++.+ ..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999876665543332 4444433 2232222 3456799999999998886655 6789999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
||..+++.+..... ..+..++... +.++++. ..|.+
T Consensus 244 ~d~~tg~~~~~~~l--~D~cGva~~~--~~f~~ss-G~G~~ 279 (305)
T PF07433_consen 244 WDAATGRLLGSVPL--PDACGVAPTD--DGFLVSS-GQGQL 279 (305)
T ss_pred EECCCCCEeecccc--CceeeeeecC--CceEEeC-CCccE
Confidence 99999998877643 3456666654 3344444 34554
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=9.3e-09 Score=106.63 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=116.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---eeeecCCCCCeEEEEEecCCCEEEEEECCCcEE---EEECCCCe
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK---VWDFARCQ 261 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~---iwdl~~~~ 261 (715)
.+..+..++++++||++..+....++++..... ..........-+++.|..+...+..+..-|.++ +|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 344556677888888888888877777655432 111122334445666666666666555544444 4444443
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
....+.+|..-+++|+|++|+++|+++..|..|+|-....-..+..| .+|+.-|..++.-++ ..|++++.|++|++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 33445679999999999999999999999999999877655555554 469999999998754 5689999999999999
Q ss_pred CCCCeEEEEee
Q 005096 341 IRAMKELESFR 351 (715)
Q Consensus 341 l~t~~~~~~~~ 351 (715)
+++++.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999987664
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.97 E-value=2.2e-08 Score=112.60 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=146.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEE
Q 005096 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318 (715)
Q Consensus 239 d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl 318 (715)
+...++.|+....+..+|+++.++.+...-....|+-+..+ +++|++|...|+|.+-|.++.+.+.++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 44567778888889999999988877776555566666654 7899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE---cCC
Q 005096 319 KWNQNGNWVLTASK---------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL---VGH 386 (715)
Q Consensus 319 ~~spdg~~Lasgs~---------dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd---~~~ 386 (715)
.. .|++|++++. |..|+|||+|+.+.+.-+.-+.+. .-+.|+|.-...+++++..|...+-| +.+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 65 5888988873 557899999998877666544443 56778887778899999999999998 433
Q ss_pred CCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
............+.+..+++++++..|+.+..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3333333434455699999999999999999999999997
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.96 E-value=2.1e-07 Score=108.19 Aligned_cols=238 Identities=14% Similarity=0.235 Sum_probs=158.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC----C-
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN----M- 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~----~- 217 (715)
-++.|.++.|.-+..-|+.+..+|.|.+-|.++.... ....-+..|.+++|++|+++++..+.+++|.+-.-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 3468999999999999999999999999998876433 334457889999999999999988887777664320 0
Q ss_pred ------------------CceeeeecC---------------------CCCCeEEEEEecCCCEEEEEE-----CCCcEE
Q 005096 218 ------------------NNVKANKSA---------------------HKESVRDLSFCRTDLKFCSCS-----DDTTVK 253 (715)
Q Consensus 218 ------------------~~~~~~~~~---------------------h~~~I~~l~~spd~~~Las~s-----~Dg~V~ 253 (715)
++....+.+ ..+.=+.|+|.-||.++|+.. ...+|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 010111111 011123589999999988732 237899
Q ss_pred EEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCC---CceeEEeccCCCceEEEEEcCCCCEE
Q 005096 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs---~Dg~I~iwDl~s---~~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
|||-+ +..-..-....+.-.+++|-|.|.++++.. .|+.|.+|.-+. ++-...+......|..++|+.++..|
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 99976 433333333344456899999999888753 456798987442 22222233334448999999999999
Q ss_pred EE---EECCCeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 328 LT---ASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 328 as---gs~dg~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
++ ......|++|-+.+..- ...+....... +.|+|.....|.+-..+|.+.++|+
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 87 44555699999887443 33333333333 8888865555655557777666654
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=1.1e-08 Score=102.32 Aligned_cols=239 Identities=17% Similarity=0.275 Sum_probs=153.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeecCC------------CCCeEEEEEecCC--CEEEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCSC 246 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~~~~h------------~~~I~~l~~spd~--~~Las~ 246 (715)
...|+++.|...|.||++|...|.|.+|..+... ....+..| ...|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999755432 11122333 3468889998765 457888
Q ss_pred ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE--------Ee-CCCcEEEEECCCCceeEEe-ccCCCceE
Q 005096 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS--------GG-KDSLVKLWDAKSGRELCSF-HGHKNMVL 316 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s--------gs-~Dg~I~iwDl~s~~~~~~~-~~~~~~I~ 316 (715)
+.|.+|++|.+........-. ..--.++. ++-+.-|.+ .+ .|..|..+ ..+.+ ..|..-|.
T Consensus 106 tNdktiKlWKiyeknlk~va~--nnls~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAE--NNLSDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhc--cccccccc-cccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEee
Confidence 899999999986532211111 10001111 111110100 01 11111111 11112 45778899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCC-----CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHR-----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h~-----~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
+|+|+.|...++++ .|-+|.+|++..-.. +..++.|. .-|++..|+|....++...+..|.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999998888776 478899999874332 33333333 3488899999888899999999999999998432
Q ss_pred ce------EE---------EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccc
Q 005096 389 PQ------VE---------IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 389 ~~------~~---------~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
.. .+ ++..-...|.++.|+++|++|++-+ --+|+|||++......+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pik 316 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIK 316 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCce
Confidence 11 11 1112234688999999999988765 46899999987665443
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=1.3e-06 Score=87.60 Aligned_cols=241 Identities=11% Similarity=0.076 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 192 MVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 192 l~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
++.+.||++||+. .|..|.|-..+++ .++.+. ++..-.-+-++|++|+..||.+...|+|++||+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 5566788877764 4556666543332 222222 223334578999999999999999999999998653 33333
Q ss_pred cc-------cCCceEEEEEcCCC------CEEEEEeCCCcEEEEECCC-----CceeEEec---cCCCceEEEEEcCCCC
Q 005096 267 TG-------HGWDVKSVDWHPTK------SLLVSGGKDSLVKLWDAKS-----GRELCSFH---GHKNMVLCVKWNQNGN 325 (715)
Q Consensus 267 ~~-------~~~~I~si~~spdg------~~L~sgs~Dg~I~iwDl~s-----~~~~~~~~---~~~~~I~sl~~spdg~ 325 (715)
.. ....|..+.|.... ..|++...+|.++-|-+.. .+...++. .+...|.++.|++..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 23456667665422 2566667778887776532 22333332 2466899999999988
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCC------cEEEEEcCCCCceEEEeeccC
Q 005096 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDG------SIFHWLVGHETPQVEIHNVHD 398 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG------~I~iwd~~~~~~~~~~~~~h~ 398 (715)
+|++|+.... +++. -+.....+++-.+..+...+.. +..+|+ +..+|.+-+. ..........
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~ 229 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQ 229 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-eeeeccccCC
Confidence 8888764322 0000 0011112222222211111111 111111 1123332211 1111112346
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCcccc
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 447 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~ 447 (715)
..|..+..+|||.+||+...+|.|.+|++-.-. ...++..++.-+|+
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~--~~~~W~~~eqPg~~ 276 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR--LQRSWKQDEQPGYN 276 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcch--hhcccchhhCCCCc
Confidence 789999999999999999999999999985433 33344444444443
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=1.7e-06 Score=86.78 Aligned_cols=228 Identities=14% Similarity=0.191 Sum_probs=136.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEEEeccC---CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHD---HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~l~~h~---~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
++.+.||++||+.- |..|.|-..++. ..+......+ -.-+.++||+|+.+||.+...|+|++||+...++...-
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56778898777664 556777654432 2223333222 23568999999999999999999999998764433221
Q ss_pred ------cCCCCCeEEEEEecCC------CEEEEEECCCcEEEEECC-----CCeeEEEec---ccCCceEEEEEcCCCCE
Q 005096 225 ------SAHKESVRDLSFCRTD------LKFCSCSDDTTVKVWDFA-----RCQEERSLT---GHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 225 ------~~h~~~I~~l~~spd~------~~Las~s~Dg~V~iwdl~-----~~~~~~~l~---~~~~~I~si~~spdg~~ 284 (715)
......|..+.|.... ..|++...+|.++-|-+. ..++...+. .+...|.++.+++..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 1223567777775432 246677778888877652 223333333 24668999999999998
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE-E-EEEECCC------eEEEEECCCCeEEEEeecCCCC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-V-LTASKDQ------IIKLYDIRAMKELESFRGHRKD 356 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~-L-asgs~dg------~I~iwDl~t~~~~~~~~~h~~~ 356 (715)
|++|+.... +++. .+.....+++-.+-.+.-+ . ++...|+ +..+|.+-+.+...........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 888775432 0000 0011122222222222111 1 1111121 1233443333333333446778
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
|..|..+| ++.+||+...+|.|.+|++-.-..
T Consensus 232 i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 232 IFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eEEEEECC-CCCEEEEEEcCCeEEEEecCcchh
Confidence 99999999 999999999999999999965443
No 308
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.86 E-value=6.6e-07 Score=97.24 Aligned_cols=262 Identities=13% Similarity=0.221 Sum_probs=152.8
Q ss_pred cCCCCEEEEEe---------CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 153 TPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 153 spdg~~Latgs---------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
|+|+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57888777642 346799999999766554443 67788999999999998775 57899998877744433
Q ss_pred ecCC-----------------CCCeEEEEEecCCCEEEEEECC-Cc----------------------------------
Q 005096 224 KSAH-----------------KESVRDLSFCRTDLKFCSCSDD-TT---------------------------------- 251 (715)
Q Consensus 224 ~~~h-----------------~~~I~~l~~spd~~~Las~s~D-g~---------------------------------- 251 (715)
.... -+.-..+.||||+++|+....| ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1233568899999998865432 12
Q ss_pred -EEEEECCCCeeEE-E-e---cccCCceEEEEEcCCCCEEEEE--eCCC---cEEEEECCCCceeEEec-cCCCce---E
Q 005096 252 -VKVWDFARCQEER-S-L---TGHGWDVKSVDWHPTKSLLVSG--GKDS---LVKLWDAKSGRELCSFH-GHKNMV---L 316 (715)
Q Consensus 252 -V~iwdl~~~~~~~-~-l---~~~~~~I~si~~spdg~~L~sg--s~Dg---~I~iwDl~s~~~~~~~~-~~~~~I---~ 316 (715)
+.|+|+++++... . . .....-+..+.|.++++.|++. ..+. .|.++|..++++...+. ....+| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3445554443321 1 1 1234457889999988844443 2222 46777888776543332 223333 2
Q ss_pred EEEEc-CCCC-EEEEEECCCe--EEEEECCCCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCC--cEEEEEcCCC-C
Q 005096 317 CVKWN-QNGN-WVLTASKDQI--IKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG--SIFHWLVGHE-T 388 (715)
Q Consensus 317 sl~~s-pdg~-~Lasgs~dg~--I~iwDl~t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG--~I~iwd~~~~-~ 388 (715)
.+.|. +++. +|.....||. |.++|...+. ...+....-.|.. +.|+..++.+++++..++ .-.||.++.. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 5554 4555557774 5556666555 4456556666755 677775666666776633 4455554444 3
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
...+.+.........+.|++++++++..+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 33344433333336899999998877554
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=3e-06 Score=87.51 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=159.3
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCc-EEEEeCCCCceeeeecCCCCCe--EEEEEecCCCEEEEEEC-----CCcEEEEECC
Q 005096 188 AIRSMVWSHN-DNWMVSGDDGGA-IKYWQNNMNNVKANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFA 258 (715)
Q Consensus 188 ~V~~l~~spd-g~~L~tgs~dg~-I~iwd~~~~~~~~~~~~h~~~I--~~l~~spd~~~Las~s~-----Dg~V~iwdl~ 258 (715)
....++.+++ ...++.+-.-|+ ..+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456788884 456667766665 6789999988877765444332 24679999999998754 4789999998
Q ss_pred -CCeeEEEecccCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeEEec----cCCCce
Q 005096 259 -RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMV 315 (715)
Q Consensus 259 -~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~------------------Dg~I~iwDl~s~~~~~~~~----~~~~~I 315 (715)
+.+.+..+..+.-.-..|.+.+|++.|+++.. +-.|.+.|.++|+.+.... .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 77888888888877888999999988877631 2346667888888777643 367789
Q ss_pred EEEEEcCCCCEEEEEECCC-------eEEEEECCCCeEEEEee-------cCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 316 LCVKWNQNGNWVLTASKDQ-------IIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg-------~I~iwDl~t~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
..+++..+|..++..-..| .|-+++.. +.+..+. .....|-+|+++.+++.+.+|+-..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999987666554433 34444433 3233322 345678999999843445566667788999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
||..++..+.... -..+..++...++ ++++.+ .|. +|.+..
T Consensus 244 ~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~--~~~~~~ 284 (305)
T PF07433_consen 244 WDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ--LIRLSP 284 (305)
T ss_pred EECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc--EEEccC
Confidence 9998876543332 3356777777666 455444 454 444433
No 310
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.84 E-value=1.2e-06 Score=99.25 Aligned_cols=266 Identities=11% Similarity=0.065 Sum_probs=164.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC------EE--EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA------IR--SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~------V~--~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
+..|++++.++.|+-.|.++++.+-.+...... +. .+++. ++..+++++.++.|.-+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 446777888899999999998887666543320 10 11111 2267888889999999999999888776543
Q ss_pred CCC-----eE-EEEEecCCCEEEEEE---------CCCcEEEEECCCCeeEEEecccCC--------------------c
Q 005096 228 KES-----VR-DLSFCRTDLKFCSCS---------DDTTVKVWDFARCQEERSLTGHGW--------------------D 272 (715)
Q Consensus 228 ~~~-----I~-~l~~spd~~~Las~s---------~Dg~V~iwdl~~~~~~~~l~~~~~--------------------~ 272 (715)
... +. ...+. +.+++.++ .++.|..+|.++++.+-.+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 11222 24455543 367899999999988776643211 0
Q ss_pred e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEeccCCCceE------EEEEc----CC
Q 005096 273 V-KSVDWHPTKSLLVSGGKDS------------------LVKLWDAKSGRELCSFHGHKNMVL------CVKWN----QN 323 (715)
Q Consensus 273 I-~si~~spdg~~L~sgs~Dg------------------~I~iwDl~s~~~~~~~~~~~~~I~------sl~~s----pd 323 (715)
| .+.++++.+.++++++.|+ .|.-+|+++++.+..+......+. ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1344555567788887665 699999999999887652211110 01111 23
Q ss_pred CC---EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE------------------eCCCcEEEE
Q 005096 324 GN---WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG------------------SLDGSIFHW 382 (715)
Q Consensus 324 g~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg------------------s~DG~I~iw 382 (715)
+. ++++++.+|.|..+|.++++.+....... ..++.++ ..++.+ ..+|.|.-+
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 43 67888899999999999999988765321 1122222 222221 235778888
Q ss_pred EcCCCCceEEEeecc-C------CCE--EEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 383 LVGHETPQVEIHNVH-D------NTV--WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 383 d~~~~~~~~~~~~~h-~------~~V--~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|..+++.+.+..... . ... ..+.. .+.+|++++.||.|+.+|.++.+.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCce
Confidence 888877666654320 0 111 11222 457888889999999999866443
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.83 E-value=1.8e-06 Score=100.76 Aligned_cols=237 Identities=13% Similarity=0.170 Sum_probs=153.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CC--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR-- 259 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl----~~-- 259 (715)
+..|.++.|.-+.+-|+++..+|.|.+-|.++...... ......|.+++|++|+..++..+.+.+|.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 46799999999999999999999999998877654332 345778999999999999999998888776542 00
Q ss_pred -----------------CeeEEEecccC---------------------CceEEEEEcCCCCEEEEEe-----CCCcEEE
Q 005096 260 -----------------CQEERSLTGHG---------------------WDVKSVDWHPTKSLLVSGG-----KDSLVKL 296 (715)
Q Consensus 260 -----------------~~~~~~l~~~~---------------------~~I~si~~spdg~~L~sgs-----~Dg~I~i 296 (715)
++....|.+.. +.=++|+|--||.++++.. ....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11111222111 1123599999999998842 2378999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEE----EeecCCCCeEEEEEccCCCCE
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELE----SFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~t~~~~~----~~~~h~~~V~~l~~sp~~~~~ 369 (715)
||-+ +..-..-....+.-.+++|-|.|.++++.- .|+.|.+|.-. |-.-. .+......|..++|+. +..+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC-CCCc
Confidence 9977 433222233344557899999999998753 45678888743 43332 2333445599999998 7888
Q ss_pred EEE---EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEEec
Q 005096 370 FVS---GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 370 l~s---gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iWdl 427 (715)
|++ ......|++|-+.+-..-.+......... -+.|+|.. ..|.....+|.+.++++
T Consensus 304 LAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence 776 44444599998876543222211111111 16777752 33444445666555544
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=1.8e-08 Score=98.85 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcee-EEeccCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEeecCC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs-----~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
.++.++++..||.+.+++.+.-..+ ..+........+.++...++.|.++. .-+..++|+++-.+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4678999999999999998752111 11111111112233333445444432 23456677776555444444444
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEecCC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~~ 429 (715)
..|++++-+|....++++|+.||.|-+||.+.......++..|+..|+.+-|+|. ...|+++++||.+..||-+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5599999999888899999999999999999988888888999999999999996 68899999999999998763
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.4e-07 Score=105.53 Aligned_cols=182 Identities=23% Similarity=0.329 Sum_probs=134.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...++|++++ ++.|+.|+.+|.|++++....- .+...|... .-+|.++++|+.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777775 6899999999999999876543 223334333 55899999999999999999988777776
Q ss_pred ecccCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECC--CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE
Q 005096 266 LTGHGWDVKSVDWHPT-----KSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (715)
Q Consensus 266 l~~~~~~I~si~~spd-----g~~L~sgs~Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i 338 (715)
+. ....+.+|+++|+ .+.+++|+.-| +.++.-+ ..+.-..+....+.|.+++|. |++||-++.+| |+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 65 5678999999998 46889999888 8777533 122222456678899999996 78888887665 999
Q ss_pred EECCCCeEEEEeecCCCC------eEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 339 YDIRAMKELESFRGHRKD------VTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~------V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
||+.+.+.+..+...... -..+.|.+ +..|+.|=.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 999998888777644333 34677874 4555555444 78888886
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=2.8e-09 Score=118.75 Aligned_cols=197 Identities=15% Similarity=0.227 Sum_probs=146.3
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--cEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVK 253 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--~V~ 253 (715)
.+..+.+..|+...+|++|+-+.++|++|+..|.|++|++.++.......+|...|+.+.-+.|+..+++.+.-. ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345566778889999999999999999999999999999999999999999999999999999998877665533 477
Q ss_pred EEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-c---cCCCceEEEEEcCCCCEEE
Q 005096 254 VWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H---GHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 254 iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~---~~~~~I~sl~~spdg~~La 328 (715)
+|++.+ +...+++. .-.++.|+..-..-+.|+......|||+.++..+.++ . +....-++..|+|+.++|+
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 999853 34444444 3457888866554555666677899999998876653 2 2223347889999988776
Q ss_pred EEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 329 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.|| .+||++..+.++.|...... ..=.|+| ++.-++..+ .|||+++-+
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccC-CCceEEeec-----hhhhhHHHH
Confidence 355 58999988777777655522 2335888 555555544 378887654
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.79 E-value=1.5e-07 Score=106.10 Aligned_cols=182 Identities=13% Similarity=0.188 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
+...++.|+....+..+|+++.+...........|.-++ .+++++++|...|+|.+-|.++.+.++++.+|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677777777888889988877776655555555554 478899999999999999999999999999999999988
Q ss_pred EEcCCCCEEEEEeC---------CCcEEEEECCCCceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCe-
Q 005096 277 DWHPTKSLLVSGGK---------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMK- 345 (715)
Q Consensus 277 ~~spdg~~L~sgs~---------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~- 345 (715)
+.. |++|++++. |..|+|||+|.-+.+.-+.-+.+. .-+.|.|. ...+++++..|...+.|..+..
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 876 889998875 556899999987776655433332 45667774 3568888889999999944322
Q ss_pred ---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 346 ---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.+..+......+..+.+++ +++.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence 2334444556699999999 9999999999999999973
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-07 Score=99.32 Aligned_cols=210 Identities=11% Similarity=0.106 Sum_probs=152.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCC--CEEEE-EeCCCcEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHND--NWMVS-GDDGGAIKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg--~~L~t-gs~dg~I~i 212 (715)
.+..|...|.+++.+-|+.++.+.+. |..++++|+++...+.-++.- .+.+.++ .++.. ..|++ ...++.|.|
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEE
Confidence 45678888999999999999999777 999999999887665443322 2222221 12211 13433 346689999
Q ss_pred EeCCCC--ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC------CeeEE---------EecccCCceEE
Q 005096 213 WQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------CQEER---------SLTGHGWDVKS 275 (715)
Q Consensus 213 wd~~~~--~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~------~~~~~---------~l~~~~~~I~s 275 (715)
+|-... ........|...|.++.+.+.+..+++....|.|..|..+. .+... .+...+....+
T Consensus 127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred ECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 986544 33444567899999999999999999999999999998762 11111 12233456789
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC---------------------------------CCceEEEEEcC
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---------------------------------KNMVLCVKWNQ 322 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------------------~~~I~sl~~sp 322 (715)
+.|++++..+.+-+.|..|+++++++++.++.+... ...-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 999999999999999999999999998876554311 11235677888
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
.+++|+.++.=| |+|.++.++++++.+
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 999999998665 889999988877665
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=9.4e-07 Score=99.58 Aligned_cols=207 Identities=12% Similarity=0.173 Sum_probs=142.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCC---c--
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGG-----AIKYWQNNMN---N-- 219 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~dg-----~I~iwd~~~~---~-- 219 (715)
+|++.+..+|.|+.+|.|.+.+- ..+.+..+..+... |..+....+.++|++.+.|+ .|+||+++.- +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46778889999999999998873 34556778888777 44444333446787776664 4899997643 1
Q ss_pred -ee--eeec-----CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 220 -VK--ANKS-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----ARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 -~~--~~~~-----~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl----~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+. ..+. .....+.+++++.+-+.+|+|-.||.|.++.- +.+.........+..|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 22 0111 13457889999999999999999999999853 222233333445678999999999887444
Q ss_pred EeCCCcEEEEECCCCc-eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEE
Q 005096 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTA 359 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~-~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~ 359 (715)
+.....|.+|.+.... .+..+..+...+.|.++++....|++++ +..|.+||.........|. ++......
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4444679999998433 2445677888899999987555466554 5679999998766666666 55544333
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.8e-07 Score=93.34 Aligned_cols=255 Identities=13% Similarity=0.086 Sum_probs=151.4
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEE
Q 005096 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCS 245 (715)
Q Consensus 168 I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las 245 (715)
|++.+..+.+....+..+...|..++|++..+ +|..++.+..|+|.|+++...+..+..+ ..+++++|+-|+ ++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555556677788899999999877 7788999999999999999888888776 889999999876 56778
Q ss_pred EECCCcEEEEECCCCeeE-EEecc--cCCceEEEEE------cCCCCEEEEEeCCCcEEEEECCCC----ceeEEeccCC
Q 005096 246 CSDDTTVKVWDFARCQEE-RSLTG--HGWDVKSVDW------HPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHK 312 (715)
Q Consensus 246 ~s~Dg~V~iwdl~~~~~~-~~l~~--~~~~I~si~~------spdg~~L~sgs~Dg~I~iwDl~s~----~~~~~~~~~~ 312 (715)
|..+|.|.|||++..+-. ..+.+ ....|..|+. .+.+.+|+..+.+ +..|++.-. -++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 888999999999654322 12211 2233443332 2234455544432 556655421 2222222 24
Q ss_pred CceEEEEEcCCCCEEEEEECCC-------eE-EEEECCCCeEEEEee-cC-CCC------eEEEEEccCCCCEEEEEeCC
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQ-------II-KLYDIRAMKELESFR-GH-RKD------VTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg-------~I-~iwDl~t~~~~~~~~-~h-~~~------V~~l~~sp~~~~~l~sgs~D 376 (715)
+...++.+.+..+.++...... .| .--|.++|..+...+ .+ .+. -..+.-.+++..++.++++.
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4455555655445555443221 11 112333444333222 11 111 11122223233344455666
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC--CCEEEEEECCCeEEEEecCC
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.+.+||..+......+.. +..|.+++.... +.+|++-. |..++||+.+.
T Consensus 411 n~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred ceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 7899999988776655543 468888876543 34555554 77899997653
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.2e-06 Score=98.79 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=138.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCC-eEEEEEecCCCEEEEEECCC-----cEEEEECCCC------
Q 005096 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC------ 260 (715)
Q Consensus 193 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~------ 260 (715)
+|++.+..++.|+.+|.|.+.+-. -.....+..+... |..+....+.++|++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 456778899999999998887633 2333555666666 55554444447788877664 4999999543
Q ss_pred eeE--EEecc-----cCCceEEEEEcCCCCEEEEEeCCCcEEEEE--CCC--CceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 261 QEE--RSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWD--AKS--GRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 261 ~~~--~~l~~-----~~~~I~si~~spdg~~L~sgs~Dg~I~iwD--l~s--~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
.++ ..+.. ....+.+++++.+-+.+|+|-.||.|.++. +.. +.........+..|+.+++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 12222 345688999999999999999999999984 321 2222223345678999999999887444
Q ss_pred EECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC
Q 005096 330 ASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~ 400 (715)
+.....|.+|.+.... .+..+..+...+.|.++++....+++++ +..|.+||.+..+....+..+|+..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeEE
Confidence 4456689999998433 2555778888999999997333344443 3479999988766666655455443
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.1e-06 Score=97.17 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=106.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-- 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~-- 220 (715)
...|.--+++..+++|+.|++.|.|++|+...++..+.-. +..+.+..+..+.++.++|.|+..|.|.|+.++....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555667788999999999999999977765444332 2445566677888888889999999999998766321
Q ss_pred -e--ee-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----eeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 221 -K--AN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 221 -~--~~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~----~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
. .. -+.|+..|++++|+.|+..|++|...|+|.+-.++.. .....+......|..|++. ..+|++++.-.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh
Confidence 1 11 1347889999999999999999999999999888762 1122333455677777766 33444433323
Q ss_pred cEEEEECCC
Q 005096 293 LVKLWDAKS 301 (715)
Q Consensus 293 ~I~iwDl~s 301 (715)
..+++++.
T Consensus 191 -~~Lc~tE~ 198 (726)
T KOG3621|consen 191 -CILCQTEA 198 (726)
T ss_pred -hheeecch
Confidence 33455543
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.69 E-value=8.7e-06 Score=92.34 Aligned_cols=229 Identities=10% Similarity=0.073 Sum_probs=147.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEeCCCCcee
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IR-SMVWSHNDNWMVSGD---------DGGAIKYWQNNMNNVK 221 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~-----V~-~l~~spdg~~L~tgs---------~dg~I~iwd~~~~~~~ 221 (715)
..+++++.+|.|+.+|.++++.+-.+...... +. +..+. +.++++++ .++.|..+|.++++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57888899999999999999988777654321 11 12222 24555553 3678889999998877
Q ss_pred eeecCCCCC--------------------e-EEEEEecCCCEEEEEECCC------------------cEEEEECCCCee
Q 005096 222 ANKSAHKES--------------------V-RDLSFCRTDLKFCSCSDDT------------------TVKVWDFARCQE 262 (715)
Q Consensus 222 ~~~~~h~~~--------------------I-~~l~~spd~~~Las~s~Dg------------------~V~iwdl~~~~~ 262 (715)
..+...... | ...++...+..++.++.|+ .|..+|+++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 765432110 1 1233444556777777665 799999999998
Q ss_pred EEEecccCCceE------EEEEc----CCCC---EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 263 ERSLTGHGWDVK------SVDWH----PTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 263 ~~~l~~~~~~I~------si~~s----pdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
+-.+......+. ...+. -++. .+++++.+|.|..+|.++|+.+...... ...++.++ +.+++
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 877643211111 01111 1333 6788889999999999999988776422 11233333 33333
Q ss_pred E------------------ECCCeEEEEECCCCeEEEEeecCC--------CCe--EEEEEccCCCCEEEEEeCCCcEEE
Q 005096 330 A------------------SKDQIIKLYDIRAMKELESFRGHR--------KDV--TALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 330 g------------------s~dg~I~iwDl~t~~~~~~~~~h~--------~~V--~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
+ ..+|.|.-+|+++++.+.+..... ... ..+.. .+.+|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEE
Confidence 2 246789999999999888776431 111 12222 4578888889999999
Q ss_pred EEcCCCCceEEEee
Q 005096 382 WLVGHETPQVEIHN 395 (715)
Q Consensus 382 wd~~~~~~~~~~~~ 395 (715)
+|.++++.+.+...
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999988777654
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.6e-07 Score=92.92 Aligned_cols=242 Identities=10% Similarity=0.100 Sum_probs=144.8
Q ss_pred ecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~ 216 (715)
.+.+|..-|..++||+..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|+ ++|+.|..+|.|.|||+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4677888999999999887 7889999999999999999999888887 889999998775 577888899999999987
Q ss_pred CCce-eeeec--CCCCCeEEEEEe------cCCCEEEEEECCCcEEEEECCC--CeeEEEec-ccCCceEEEEEcCCCCE
Q 005096 217 MNNV-KANKS--AHKESVRDLSFC------RTDLKFCSCSDDTTVKVWDFAR--CQEERSLT-GHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 217 ~~~~-~~~~~--~h~~~I~~l~~s------pd~~~Las~s~Dg~V~iwdl~~--~~~~~~l~-~~~~~I~si~~spdg~~ 284 (715)
..+- +..+. .....|..|+.- +.+.+|+..+.+ +..|++.- ......+. +..+...++.+++..+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 6432 11111 122333333322 233444444433 55566522 11112121 12334455566554454
Q ss_pred EEEEeCC-C------cEEE-EECCCCceeEEec-cC-CCc------eEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEE
Q 005096 285 LVSGGKD-S------LVKL-WDAKSGRELCSFH-GH-KNM------VLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 285 L~sgs~D-g------~I~i-wDl~s~~~~~~~~-~~-~~~------I~sl~~spdg~~La-sgs~dg~I~iwDl~t~~~~ 347 (715)
++..... . .|-. -|.++|..+...+ .+ ... -..+.-.++.++|+ ++...+.+.+||..+++.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 4443322 1 0111 1223343332221 11 000 01111223445555 4556678999999999999
Q ss_pred EEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcC
Q 005096 348 ESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~ 385 (715)
.++... ..|.+++....++. +|++-. |..++||..+
T Consensus 425 Q~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 425 QTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 888744 77888877654444 555544 5578887654
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=6.5e-07 Score=100.21 Aligned_cols=182 Identities=13% Similarity=0.197 Sum_probs=132.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.+.|+|++++ +++|+.|+.+|.|++++....- ++...|... ..+|.++++|+.||+|.|..+.+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777775 5689999999999999866432 333334333 55799999999999999998888776655
Q ss_pred ecCCCCCeEEEEEecC-----CCEEEEEECCCcEEEEECC--CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 224 KSAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd-----~~~Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+ .....+.+|+++|| .+.+++|+.-| +.++.-+ ..+....+....+.|.++.|. |+++|-++++| |++
T Consensus 109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 4 45678999999997 46799999888 7776531 111122455677899999998 88999998877 999
Q ss_pred EECCCCceeEEeccCCCc------eEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 297 WDAKSGRELCSFHGHKNM------VLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~------I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
||+.+++.+..+...... -..+.|.++. .|+.|- ..+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 999988877766533322 3457787554 455554 4578888887
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.66 E-value=3.3e-05 Score=80.86 Aligned_cols=243 Identities=9% Similarity=0.065 Sum_probs=152.3
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceEEEEeccCC-C------EEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDH-A------IRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs~----------dg~I~Iwd~~~~~~~~~l~~h~~-~------V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.+.+++|++.+++++. .-.|.+||..+......+..-.. . ...++++.|++++++... .-+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3667899998887532 34699999999988776654332 1 224678889998877543 467
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEEEe----cccCCce-EEEEEcCCCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSL----TGHGWDV-KSVDWHPTKS 283 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~~l----~~~~~~I-~si~~spdg~ 283 (715)
|.|.|+..++.+..+..- .+..+--+ ....|.+.|.||++....+. .++...+. ......+ ..-++..++.
T Consensus 120 VtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 899999998887765422 22222222 23568888999999999886 44443221 1122222 2334445556
Q ss_pred EEEEEeCCCcEEEEECCCCcee--EEeccC------CC----ceEEEEEcCCCCEEEEEECCC----------eEEEEEC
Q 005096 284 LLVSGGKDSLVKLWDAKSGREL--CSFHGH------KN----MVLCVKWNQNGNWVLTASKDQ----------IIKLYDI 341 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~--~~~~~~------~~----~I~sl~~spdg~~Lasgs~dg----------~I~iwDl 341 (715)
.++..+.+|.|+-.|+...... ..+... .+ .-.-+++++..+.|++.-..| .|.++|+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 6777888999999998765422 122110 11 123477777666666532211 6899999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEee
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~ 395 (715)
.+.+.+.++.. ...+.+|.++.++.-+|++.+ .++.|.|||..+++.+..+..
T Consensus 277 ~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 277 KTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99999999874 345779999987666777654 578999999999876655543
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=6.9e-08 Score=98.17 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=112.9
Q ss_pred EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeeecCCCCCeEEEEE
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSF 236 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~ 236 (715)
+.+.+-.|-|-|++++... .+. ..+.|.++.|.-.+++++.|+.+|.|.++|+... ........|...|+++..
T Consensus 229 s~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred cccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 3344445777777765332 222 4677889999988999999999999999998765 223333468899999988
Q ss_pred ec-CCCEEEEEECCCcEEEEECCCCee---EEEecccCCceEEE--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 237 CR-TDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSV--DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 237 sp-d~~~Las~s~Dg~V~iwdl~~~~~---~~~l~~~~~~I~si--~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.. ++.+|.+.+.+|+|++||++.-++ +..+.+|.+.-.-+ .+++....++++++|...+||.++++..+.++.
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 77 788999999999999999987666 77788776544433 345566788899999999999999999888765
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.5e-06 Score=97.26 Aligned_cols=268 Identities=11% Similarity=0.093 Sum_probs=159.0
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 148 NRVLWTPTGRRLITGSQ----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
+-++|+|...++++++. .|.|.||- ++++..+... ..-.+++++|++..-.|+.|-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 44579999999988864 58888884 4444322221 122356799999988889999999999999988888777
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--cc--CC--ceEEEEEcCCCC------EEEEEeCC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GH--GW--DVKSVDWHPTKS------LLVSGGKD 291 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~--~~--~I~si~~spdg~------~L~sgs~D 291 (715)
...|...|..+.|+++|..++++..-|.|.+|.+.....+.... .| .. ...|..+++++. ..++.+++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 78899999999999999999999999999999875332222211 11 11 234555566532 23344444
Q ss_pred CcEE-EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 292 SLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 292 g~I~-iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
..+- .++.+.....+... + .=.++|..++.++.+|+|+..|-. +++....+.... ..+-|.+ ...-|
T Consensus 177 ~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~--vQmLf~~-~~eai 244 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSE--VQMLFMG-YCEAI 244 (1416)
T ss_pred hhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccch--HHHHHhc-ccceE
Confidence 4343 33322111111111 0 113577788888889988887743 444433332111 0111111 11111
Q ss_pred EEEeCCCcEEEEEcCC----------------CCc---------------eEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 371 VSGSLDGSIFHWLVGH----------------ETP---------------QVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~----------------~~~---------------~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
++...+-++.++-+.. +.. ..+.-......++|++++..+..|+.|...
T Consensus 245 ~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~ 324 (1416)
T KOG3617|consen 245 SIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKE 324 (1416)
T ss_pred EEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccC
Confidence 1111111111111100 000 001111134579999999999999999999
Q ss_pred CeEEEEecCC
Q 005096 420 HTTKFWCRNR 429 (715)
Q Consensus 420 g~I~iWdl~~ 429 (715)
|.+.+|....
T Consensus 325 gnv~~w~~v~ 334 (1416)
T KOG3617|consen 325 GNVTIWLDVN 334 (1416)
T ss_pred CcEEEeeecC
Confidence 9999997543
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=4.4e-05 Score=75.53 Aligned_cols=258 Identities=13% Similarity=0.039 Sum_probs=144.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 236 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 236 (715)
.+++.|+..+.+.-.|..+++...+-.. ...|.+-+.- -+++++.|...|.+++.+.++++....+.....--.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 4677888888888888888876654322 2333332222 4678999999999999999999776666443332222334
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCc
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNM 314 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~ 314 (715)
..++..|..++.|++.+..|..+...+.+.+.......+-++.+-...|+++...|.|.--..+.. ..+.... ..+.
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~P 180 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGP 180 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCc
Confidence 568899999999999999999999898887765555555666663334444445565544444433 1121111 1122
Q ss_pred eEE--EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe-----------EEEEEccCCCCEEEEEeCCCcEEE
Q 005096 315 VLC--VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV-----------TALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 315 I~s--l~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V-----------~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
|.+ ++ -+..+..++-||.+.-+| ..++.+..+.. .+.| ..|.+. +++-+++......-.+
T Consensus 181 iF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t-~GpIf~~Pc~s~Ps~q~i~~~--~~~Cf~~~~p~~ghL~ 253 (354)
T KOG4649|consen 181 IFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPAT-KGPIFMEPCESRPSCQQISLE--NENCFCAPLPIAGHLL 253 (354)
T ss_pred cccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeecC-CCceecccccCCCcceEEEEe--cCCeEEEeccccceEE
Confidence 211 11 133455555666666666 45555554432 1111 112222 2222222222223345
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcC----CCCEEEEEECCCeEEEEecC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHP----IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~sp----dg~~L~sgs~Dg~I~iWdl~ 428 (715)
|..+.+........ +-...+++. ..++|..++.||++.|....
T Consensus 254 w~~~~g~t~~vy~~----p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~ 300 (354)
T KOG4649|consen 254 WATQSGTTLHVYLS----PKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS 300 (354)
T ss_pred EEecCCcEEEEEeC----cccceeccCCCCcchhhhhhhcCCCcEEEEEec
Confidence 66655422211111 111222222 14678888999999888554
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.2e-07 Score=96.40 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=119.3
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----eeEEE
Q 005096 192 MVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----QEERS 265 (715)
Q Consensus 192 l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-----~~~~~ 265 (715)
++|+-+-. +-++.+.+-.|.+-|++++.... + ..++.|.++.|.-.+++++.|+.+|.|.++|++.. .+...
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs-f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc-c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 36654321 22455566778888888774332 2 26778999999988999999999999999999654 33344
Q ss_pred ecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce---eEEeccCCCceEEEE--EcCCCCEEEEEECCCeEEEE
Q 005096 266 LTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVK--WNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 266 l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~---~~~~~~~~~~I~sl~--~spdg~~Lasgs~dg~I~iw 339 (715)
+. |...|+++..-. ++.+|.+.+.+|+|++||++--++ +..+++|.+.-.-+- +.+....|++++.|...+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 43 888899887766 678999999999999999997666 888888765443333 34566788889999999999
Q ss_pred ECCCCeEEEEeec
Q 005096 340 DIRAMKELESFRG 352 (715)
Q Consensus 340 Dl~t~~~~~~~~~ 352 (715)
.++.+..+.++..
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999999888764
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.60 E-value=2e-05 Score=85.66 Aligned_cols=234 Identities=14% Similarity=0.126 Sum_probs=141.9
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 195 SHNDNWMVSG---------DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 195 spdg~~L~tg---------s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
|+|+++++.. +..+.+.|||+++++....... ...+....|||+++.|+... ++.|+++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 4667766653 2246788999999776655433 67889999999999998886 56899999877644432
Q ss_pred eccc-----------------CCceEEEEEcCCCCEEEEEeCC-C-----------------------------------
Q 005096 266 LTGH-----------------GWDVKSVDWHPTKSLLVSGGKD-S----------------------------------- 292 (715)
Q Consensus 266 l~~~-----------------~~~I~si~~spdg~~L~sgs~D-g----------------------------------- 292 (715)
.... -+.-..+-|+||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1223578899999988765432 1
Q ss_pred cEEEEECCCCceeEE--e---ccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEeec-CCC---CeE
Q 005096 293 LVKLWDAKSGRELCS--F---HGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-HRK---DVT 358 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~--~---~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~~-h~~---~V~ 358 (715)
.|.|+|+++++.... . ......+..+.|.++++.|++.-.++ .|.++|..+++....+.. ... ...
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 144456665543211 1 12345688899999988444433222 577788877655333321 222 233
Q ss_pred EEEEc-cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE-EEEcCCCCEEE-EEECC--CeEEEEecCCC
Q 005096 359 ALAWH-PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLLC-SGSND--HTTKFWCRNRP 430 (715)
Q Consensus 359 ~l~~s-p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~~L~-sgs~D--g~I~iWdl~~~ 430 (715)
.+.+. +++..+|.....||.-.||-++......+.+....-.|+. +.|+.+++.|+ ++..+ +.-.||.++..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55554 6577778777888987777665555545555545556755 67788866555 44442 46677777665
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.59 E-value=2.6e-05 Score=83.06 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=139.3
Q ss_pred EEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 148 NRVLWTPTGRRLITGSQ-S--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~-d--g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+.=+|..||++|+.++. | ..+++.|+++++.+....+.........++++++.|+-...+..|+-.|+++.+....+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 34467889987776655 4 45778899998877665543232334667788888766656678888899998877777
Q ss_pred cCCCCCeEEEEEe--cCCCEEEEEEC----------------------CCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 225 SAHKESVRDLSFC--RTDLKFCSCSD----------------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 225 ~~h~~~I~~l~~s--pd~~~Las~s~----------------------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
......+-...|. .|+..++..-. ...|...|+.+++....+. ....+.-+-|+|
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP 197 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSP 197 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEET
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCC
Confidence 6666666555554 34555543211 1236667888776655554 566788999999
Q ss_pred CCCEEEEEeCCC-----cEEEEECCC-CceeEEeccC--CCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEE
Q 005096 281 TKSLLVSGGKDS-----LVKLWDAKS-GRELCSFHGH--KNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKEL 347 (715)
Q Consensus 281 dg~~L~sgs~Dg-----~I~iwDl~s-~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs-----~dg~I~iwDl~t~~~~ 347 (715)
....+++-|..| .-|||-+++ +..++.+..+ ...+..=-|.+||+.|..-+ .+..|.-+|+.+++..
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 766555544333 136675543 3334444322 23455567899998777533 2446778889887654
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCC----------------cEEEEEcCCCCceEEEeeccCC-----------C
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDG----------------SIFHWLVGHETPQVEIHNVHDN-----------T 400 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG----------------~I~iwd~~~~~~~~~~~~~h~~-----------~ 400 (715)
..... .....+..++ ++++++.-+.|. .|+++++..+... .+..|.. .
T Consensus 278 ~~~~~--p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~--~l~~h~~sw~v~~~~~q~~ 352 (386)
T PF14583_consen 278 RLMEM--PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR--KLARHDTSWKVLDGDRQVT 352 (386)
T ss_dssp EEEEE---SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEE--EEEE-------BTTBSSTT
T ss_pred EEEeC--CceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee--eeeeccCcceeecCCCccC
Confidence 33222 2344555555 677776544432 4556666544322 1111211 1
Q ss_pred EEEEEEcCCCCEEEE-EECCCeEEEEecCC
Q 005096 401 VWDLAWHPIGYLLCS-GSNDHTTKFWCRNR 429 (715)
Q Consensus 401 V~~l~~spdg~~L~s-gs~Dg~I~iWdl~~ 429 (715)
=-...|+||++.|+. +..+|...||-++.
T Consensus 353 hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 353 HPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp ----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 135789999877655 55678888886643
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=1.2e-05 Score=90.26 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=138.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceEEEEeccC-CCEEEEEE-------------------cCCCCEEE-EEeCCCcEEE
Q 005096 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVW-------------------SHNDNWMV-SGDDGGAIKY 212 (715)
Q Consensus 155 dg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~-------------------spdg~~L~-tgs~dg~I~i 212 (715)
||++|+.-.. +..|-..+++..++.+++..-+ ..+..++| .+||+.+. +.-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888888875 5667777777776665554321 22333333 33554442 2223356677
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
+|.++.+....+... .....++++++++++++.+.+ .++...+..+...+..+.... + .++..+|++..+
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V- 293 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI- 293 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE-
Confidence 777776665555432 345677888999998887632 234444433322222222110 1 133457876665
Q ss_pred eCCCcEEEEECCC----C-ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE------------EEEe
Q 005096 289 GKDSLVKLWDAKS----G-RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------LESF 350 (715)
Q Consensus 289 s~Dg~I~iwDl~s----~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~------------~~~~ 350 (715)
.++.|.++|.++ + +.+..+. -......+.++|||+++++++ .+.+|.|+|+.+.+. +.+.
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 367899999998 3 3344343 456688999999999988766 588999999988653 2333
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.. ...-...+|.. +++.+.+...|..|..|++..
T Consensus 372 ev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 EL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 32 23345667877 567888888999999999875
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.54 E-value=4.3e-08 Score=106.77 Aligned_cols=239 Identities=15% Similarity=0.184 Sum_probs=154.8
Q ss_pred CCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEec-CCCEEEEEE----CCCcEEEEEC
Q 005096 187 HAIRSMVWSHND--NWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCR-TDLKFCSCS----DDTTVKVWDF 257 (715)
Q Consensus 187 ~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp-d~~~Las~s----~Dg~V~iwdl 257 (715)
..+.|+++..+. .++++|..+|.|.+-.+.... .......+...+++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456777776554 366889999999988765432 2334456778899999987 445666663 3678999999
Q ss_pred CCC----eeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcC-CCCEEEEE
Q 005096 258 ARC----QEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTA 330 (715)
Q Consensus 258 ~~~----~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~sp-dg~~Lasg 330 (715)
.+. +....+.+ ......+++|..+.++|++|.....|.++|++.. .....+ .+..+..+.++| ..+|+++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 765 12222222 4556779999999999999999999999999832 222222 344567788888 77777766
Q ss_pred ECCCeEEEEE-CCCCeEEEEeecCC-----CCeEEEEEccCCCCEEEEEeCC-CcEEEEEcCCCCc-------eEEEe--
Q 005096 331 SKDQIIKLYD-IRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETP-------QVEIH-- 394 (715)
Q Consensus 331 s~dg~I~iwD-l~t~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~sgs~D-G~I~iwd~~~~~~-------~~~~~-- 394 (715)
. ||.|.+|| .++.+.......+. ..+..++|+|....++++.+.| ++|+++|+..... .....
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 5 99999999 44444322222222 2489999999877788877765 5799998753211 01110
Q ss_pred ---eccC---CCEEEEEEcCCC--CEEEEEECCCeEEEEecC
Q 005096 395 ---NVHD---NTVWDLAWHPIG--YLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 395 ---~~h~---~~V~~l~~spdg--~~L~sgs~Dg~I~iWdl~ 428 (715)
..+. +.|.++.|+... ...+++-.+-.+.-+++.
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1122 467777887654 334444444455555543
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.54 E-value=2.6e-05 Score=86.28 Aligned_cols=226 Identities=16% Similarity=0.198 Sum_probs=124.3
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.+...+.....+.++|++++++++ .||...|+......... .+....++|.. .+.+|+-..+++|.|+.--+.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 334445567899999999999885 46777787743333222 23445678887 455777777889999743222
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+....+.. ...+..|.. |.+|+..+.+ .|.+||+.+++.++++... .|..+.|++++++++..+.+ .+.|++
T Consensus 100 ~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22223332 123444443 7777777654 8999999999999998743 38999999999999998855 677776
Q ss_pred CCCC-----------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 341 IRAM-----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 341 l~t~-----------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
.... ..+..+......|.+.+|.. + .|+-.+.. .|+.+ +.... .++..-+..+.-+.+.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~--d-~fiYtT~~-~lkYl-~~Ge~---~~i~~ld~~~yllgy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE--D-CFIYTTSN-HLKYL-VNGET---GIIAHLDKPLYLLGYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET--T-EEEEE-TT-EEEEE-ETTEE---EEEEE-SS--EEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEc--C-EEEEEcCC-eEEEE-EcCCc---ceEEEcCCceEEEEEEcc
Confidence 5422 03334433367888999974 2 55544444 77663 22222 222222457777888887
Q ss_pred CCEEEEEECCCeEEEEecCC
Q 005096 410 GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~ 429 (715)
...|+....|+.|..+.++.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTEEEEE-TT--EEEEE--H
T ss_pred CCEEEEEECCCCEEEEEECH
Confidence 78888889999999988753
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.53 E-value=5.5e-08 Score=105.95 Aligned_cols=257 Identities=16% Similarity=0.247 Sum_probs=156.8
Q ss_pred CCccEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCC-CCEEEEEe----CCCcEEEE
Q 005096 143 NRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHN-DNWMVSGD----DGGAIKYW 213 (715)
Q Consensus 143 H~~~I~~l~~spdg--~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spd-g~~L~tgs----~dg~I~iw 213 (715)
....+.|+++.-+. ..+++|..+|.|.+-.+..... ......+....++++|++- .+.||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567788877654 4688999999999987664322 2334567788999999874 46677663 45779999
Q ss_pred eCCCC----ceeeeecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcC-CCCEEE
Q 005096 214 QNNMN----NVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLV 286 (715)
Q Consensus 214 d~~~~----~~~~~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~sp-dg~~L~ 286 (715)
|+++. .....+.. ......+++|..+.+.+.+|.....|.++|++.. .....+ ....+..+.++| ..++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 98876 11112222 4456678999988899999999999999999732 222222 233566777888 667776
Q ss_pred EEeCCCcEEEEE-CCCCc-eeEEeccCC----CceEEEEEcCCC-CEEEEEE-CCCeEEEEECCCCe--------EE---
Q 005096 287 SGGKDSLVKLWD-AKSGR-ELCSFHGHK----NMVLCVKWNQNG-NWVLTAS-KDQIIKLYDIRAMK--------EL--- 347 (715)
Q Consensus 287 sgs~Dg~I~iwD-l~s~~-~~~~~~~~~----~~I~sl~~spdg-~~Lasgs-~dg~I~iwDl~t~~--------~~--- 347 (715)
+-. |+.|.+|| .++-+ .+..+...+ ..+..++|+|.. ..+++.. ..++|+++|+..-. ..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 655 89999999 33322 222222222 348999999943 2444444 45789999985311 11
Q ss_pred EE---eecCC--CCeEEEEEccCC-CCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 348 ES---FRGHR--KDVTALAWHPFH-EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 348 ~~---~~~h~--~~V~~l~~sp~~-~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
.. ++... +.|.+..|++.. -+..+++-.+-.+.-+++.. .+...+.++.+.+-|+
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e-----~~~pa~s~p~n~L~~s 352 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE-----EVIPASSNPYNDLIFS 352 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh-----heecccCCCcccchhh
Confidence 11 22222 567788887744 33344444444444444422 2222333355555554
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.53 E-value=2.4e-05 Score=87.91 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=155.8
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEeccC----------------------------CCEEEEEEc-----CCCCEEEEEe
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQAHD----------------------------HAIRSMVWS-----HNDNWMVSGD 205 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~h~----------------------------~~V~~l~~s-----pdg~~L~tgs 205 (715)
+.+|+..|.|+|+-+-+.+.++.+...+ +......+| .||+||++-+
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5577778888888877777666542110 011111111 2677888766
Q ss_pred C-CCcEEEEeCCCCceeeeecC-CCCCeEEEEE-------------------ecCCCEEEEE-ECCCcEEEEECCCCeeE
Q 005096 206 D-GGAIKYWQNNMNNVKANKSA-HKESVRDLSF-------------------CRTDLKFCSC-SDDTTVKVWDFARCQEE 263 (715)
Q Consensus 206 ~-dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~-------------------spd~~~Las~-s~Dg~V~iwdl~~~~~~ 263 (715)
. +..|...+++..++...+.. ....+..+++ .+|++.+... -..+.+.++|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 56676677666544333321 1112222222 3344433222 22456777787776666
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
..+... .....++++++++++++.+.+. ++...+..+...+..+.... + .++..+|++..+ .++.|.++
T Consensus 229 ~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 229 WQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred EEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEE
Confidence 655432 3456788899999988886432 23333333222222222110 1 133457887776 36789999
Q ss_pred ECCC----CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce-----------EEEeeccCCCEEEE
Q 005096 340 DIRA----MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ-----------VEIHNVHDNTVWDL 404 (715)
Q Consensus 340 Dl~t----~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~-----------~~~~~~h~~~V~~l 404 (715)
|.++ +..+..+..-......+.++|++..+++++..+.+|.|+|+.+.+.. ...... ...-...
T Consensus 302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHT 380 (635)
T PRK02888 302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHT 380 (635)
T ss_pred ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceE
Confidence 9998 44444444467778899999955555666667899999999875531 111111 2234567
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCC
Q 005096 405 AWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+|..+|....|...|..|..|++++
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHH
Confidence 8999999999999999999999875
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=0.00028 Score=73.95 Aligned_cols=258 Identities=10% Similarity=0.031 Sum_probs=159.0
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceeeeecCCC-------
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAHK------- 228 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~~~~h~------- 228 (715)
+.|+|+|.++++.+-.+.. +-.-.+.+++|++.+++++ +.-.|.+||..+......+..-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999988777654 2233467899999887643 34569999999876655443221
Q ss_pred CCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcee
Q 005096 229 ESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGREL 305 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~~~ 305 (715)
.....+.++.|++++++... ...|.|.|+...+.+..+..-. ...-.-+. .+.|.+-|.||.+....+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEEEecC--CCceEEEecCCceEEEEECCCCCEe
Confidence 12344678888988877644 4579999999988887776332 22112222 2468888899999998887 45554
Q ss_pred EEe----ccCCCc-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCC----------CCeEEEEEccCCCC
Q 005096 306 CSF----HGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHR----------KDVTALAWHPFHEE 368 (715)
Q Consensus 306 ~~~----~~~~~~-I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~--~~~~~~h~----------~~V~~l~~sp~~~~ 368 (715)
.+. ...+.. +..-+++.++..++..+.+|.|+-.|+..... ...+.... +.-.-+++++..++
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 322 111222 22344555666677788899999999875542 22222110 12334667664444
Q ss_pred EEEEEe-------CCC--cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCCeEEEEecCCC
Q 005096 369 YFVSGS-------LDG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRP 430 (715)
Q Consensus 369 ~l~sgs-------~DG--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg~I~iWdl~~~ 430 (715)
+++.-. .|+ .|.+||+.+.+.+.++... ..+.+|.++.|.+ +|++.+ .++.|.+||..+.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 443321 122 4777788888877776653 3688999999865 666554 5799999999753
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=2.2e-05 Score=86.92 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=121.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
........+.++|+|+++++ +.||...|+.....+.... +.-..++|.. .+.+|+-..++.|.|+.--+.+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence 34445789999999999888 6677888888554444332 2334678887 455777777889999743332221
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
..+.. ...+..|.. |..|+..+.+ .|.+||+++++.++.+... .|..|.|++++++++..+.+ .+.|++.+.
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 22221 123444433 7777766655 8999999999999998743 38999999999999998865 577776543
Q ss_pred C-----------ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 302 G-----------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 302 ~-----------~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
. ..+..+......|.+.+|..| .++..+.. .|+. +..|+ ...+..-+..+.-+.+.+ ..+.+
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~-~~~~l 247 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLP-KENRL 247 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEET-TTTEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEc-cCCEE
Confidence 2 133444433567889999865 55555545 6666 33333 223333345566666665 45677
Q ss_pred EEEeCCCcEEEEEcC
Q 005096 371 VSGSLDGSIFHWLVG 385 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~ 385 (715)
.....|+.|..+.++
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 777777777777664
No 338
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.45 E-value=0.00017 Score=82.24 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=120.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEE---E-------EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIR---S-------MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~---~-------l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+.+|++++.++.|+-+|.++++.+-.+.... ..+. + +++ .+..|++++.|+.|.-+|.++++++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577778888889999999998877665321 1111 1 122 2356777888999999999999887665
Q ss_pred cCCCC----CeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCC-----------------------
Q 005096 225 SAHKE----SVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGW----------------------- 271 (715)
Q Consensus 225 ~~h~~----~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~----------------------- 271 (715)
..... .+.+--..-++ .|++++. +|.|..+|.++++.+-.+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 43211 12111111134 4444432 68899999999888765432110
Q ss_pred --------ceE-EEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCceeEEeccCCCce---------EE
Q 005096 272 --------DVK-SVDWHPTKSLLVSGGKD-----S-----------LVKLWDAKSGRELCSFHGHKNMV---------LC 317 (715)
Q Consensus 272 --------~I~-si~~spdg~~L~sgs~D-----g-----------~I~iwDl~s~~~~~~~~~~~~~I---------~s 317 (715)
.+. .++++++.++|+.+..+ + .|.-.|+++|+....+......+ .-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 111 34677767777766522 2 57777999999887775422221 12
Q ss_pred EEEcCCCC---EEEEEECCCeEEEEECCCCeEE
Q 005096 318 VKWNQNGN---WVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 318 l~~spdg~---~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
+.+..+|+ .|+.+..+|.+.++|.++++.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 23334665 7889999999999999999886
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.00026 Score=77.96 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=84.4
Q ss_pred CceEEEEEcCC-CCEEEEE----eCCCc----EEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECCCeEE
Q 005096 271 WDVKSVDWHPT-KSLLVSG----GKDSL----VKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 271 ~~I~si~~spd-g~~L~sg----s~Dg~----I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
....++.|+-. .+.+.+. +.+|. ..+|++..++.- .++ .....|.|++++++.+.|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456777653 3344443 23443 346676544321 122 3567899999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+||...+... +....-..+.++|+| ++.+|++|+..|.|.+||+.-......+.
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccceeec
Confidence 9998766433 333456688999999 89999999999999999997654444433
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.43 E-value=0.00055 Score=75.70 Aligned_cols=207 Identities=10% Similarity=0.116 Sum_probs=114.3
Q ss_pred EEEcCCCCEEEEEeCC----------C-eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 150 VLWTPTGRRLITGSQS----------G-EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 150 l~~spdg~~Latgs~d----------g-~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
++.++.|..||....+ . .|.||+.. ++.+..+.-..+.|.++.|+.+.+ |++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence 3445555555554333 2 48999865 445555554458999999997654 555668999999998633
Q ss_pred c------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCC---------ceE-EEEEcCC
Q 005096 219 N------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW---------DVK-SVDWHPT 281 (715)
Q Consensus 219 ~------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~---------~I~-si~~spd 281 (715)
. ...........+....+..+| ++....++.|.+.+-.+.. ..+.+..... .+. ...++.+
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~ 189 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD 189 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC
Confidence 3 111111112222222333344 3333445555544322211 1111110000 000 0223444
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCeEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTAL 360 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-~~~V~~l 360 (715)
....+....++.|.+.+-...+. +. ..+.+..+++|+++++||.-..+|.+.|.+.+-.+.+.++... ......+
T Consensus 190 ~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~ 265 (410)
T PF04841_consen 190 RVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQM 265 (410)
T ss_pred cceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEE
Confidence 44444445555555444332111 21 2457999999999999999999999999987766666666644 4566777
Q ss_pred EEcc
Q 005096 361 AWHP 364 (715)
Q Consensus 361 ~~sp 364 (715)
.|+-
T Consensus 266 ~WCG 269 (410)
T PF04841_consen 266 AWCG 269 (410)
T ss_pred EEEC
Confidence 8863
No 341
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.42 E-value=0.00014 Score=82.93 Aligned_cols=236 Identities=8% Similarity=0.051 Sum_probs=145.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCC----CEEE-EEEcCCCCEEEEEe------CCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----~V~~-l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.|+.|.-.|.++++.+-....... .+++ -.+. ++ .|+++. .+|.|..+|.++++.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 34688888999999999999998876553211 1221 1111 33 455443 2688999999998876654
Q ss_pred cCCCC-------------------------------CeE-EEEEecCCCEEEEEECC-----C-----------cEEEEE
Q 005096 225 SAHKE-------------------------------SVR-DLSFCRTDLKFCSCSDD-----T-----------TVKVWD 256 (715)
Q Consensus 225 ~~h~~-------------------------------~I~-~l~~spd~~~Las~s~D-----g-----------~V~iwd 256 (715)
..... .+. .+++.++..+|+.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 32211 111 23555555666665522 2 577888
Q ss_pred CCCCeeEEEecccCCceEE---------EEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEec--c----------CC
Q 005096 257 FARCQEERSLTGHGWDVKS---------VDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFH--G----------HK 312 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~s---------i~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~--~----------~~ 312 (715)
+++++.+-.+......+.+ +.+..+|+ .|+.+.++|.+++.|-++++.+...+ . ..
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 9999888777643332222 22334565 78899999999999999998763210 0 00
Q ss_pred ------------------Cce-----------EEEEEcCCCCEEEEEECC------------------------------
Q 005096 313 ------------------NMV-----------LCVKWNQNGNWVLTASKD------------------------------ 333 (715)
Q Consensus 313 ------------------~~I-----------~sl~~spdg~~Lasgs~d------------------------------ 333 (715)
..+ ..++++++..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 114566655555443322
Q ss_pred ---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 005096 334 ---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 334 ---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~ 395 (715)
|.|.-+|+.+++.+.+.........+.... .+.+++.++.||.++.+|.++++.+.+...
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457888999998888776433222222222 455777788899999999999998887755
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.41 E-value=5.8e-05 Score=82.53 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=123.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------------------e-----------------EEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--------------------------F-----------------EMIL 182 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--------------------------~-----------------~~~l 182 (715)
.|+++.|+.+...|++|..+|.|.||.....+ + ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999998532110 0 1112
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec--------CCCCCeEEEEEec-----CC---CEEEEE
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------AHKESVRDLSFCR-----TD---LKFCSC 246 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~--------~h~~~I~~l~~sp-----d~---~~Las~ 246 (715)
....+.|++++.| |=.++++|..+|.+.|.|++...++.... .....|+++.|+- |+ -++++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999997 66799999999999999998776655421 1334678888862 22 358889
Q ss_pred ECCCcEEEEECC--C-CeeE----EEecccCCceEEEE-EcCC-----------------C---CEEEEEeCCCcEEEEE
Q 005096 247 SDDTTVKVWDFA--R-CQEE----RSLTGHGWDVKSVD-WHPT-----------------K---SLLVSGGKDSLVKLWD 298 (715)
Q Consensus 247 s~Dg~V~iwdl~--~-~~~~----~~l~~~~~~I~si~-~spd-----------------g---~~L~sgs~Dg~I~iwD 298 (715)
+..|.+.+|.+. . +... .....+.+.|..|. ++.+ + +-+++...+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999873 1 1111 11223445555554 3221 0 2234444567899999
Q ss_pred CCCCceeEEeccCCCceEEEEEc-----CCCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWN-----QNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~s-----pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
.-+.+...+..........+++- ..+..|++-..+|.|++|.+-..+.+..+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 98887766655232233344442 35667888899999999999999998887754
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.4e-06 Score=94.42 Aligned_cols=259 Identities=15% Similarity=0.231 Sum_probs=148.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee--
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-- 224 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-- 224 (715)
+++++|+|..-.|+.|-.-|.+.+|+..+.+.......|...|..+.||++|+.|+++..-|.|.+|.......+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999989999999999999999988888888899999999999999999999999999999987632222111
Q ss_pred cCC--CCC--eEEEEEecCCC------EEEEEECCCcEE-EEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 225 SAH--KES--VRDLSFCRTDL------KFCSCSDDTTVK-VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 225 ~~h--~~~--I~~l~~spd~~------~Las~s~Dg~V~-iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
..| .+. ..|..++.++. ..++.+++..+- .++.+.....+... + .=.++|..++.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCce
Confidence 111 122 23344444431 123334433332 33332111111111 1 11357788888899999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC----------------CCCeE-----------
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI----------------RAMKE----------- 346 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl----------------~t~~~----------- 346 (715)
|+-.|-+ +++....+. .+.| .+-|.+...-|++...+-++.++-. +.|..
T Consensus 214 Vyyvdq~-g~~~~V~k~-dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQN-GRQRTVHKL-DSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCC-CcEEEEEEc-cchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 8887744 444433321 1111 1112221111221111111111111 00000
Q ss_pred -E---EEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc-CCC------CceEEEe--eccCCCEEEEEEcCCCCE
Q 005096 347 -L---ESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV-GHE------TPQVEIH--NVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 347 -~---~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~-~~~------~~~~~~~--~~h~~~V~~l~~spdg~~ 412 (715)
+ ..+. .....++|++++. .+..|+.|...|.+.+|.- .++ ...+.+. ....+.|+.+.|.+-...
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~ 369 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST 369 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence 0 0010 1345689999998 7788899999999999943 321 1122221 123467999999886544
Q ss_pred EEEEE
Q 005096 413 LCSGS 417 (715)
Q Consensus 413 L~sgs 417 (715)
+++-+
T Consensus 370 ~avn~ 374 (1416)
T KOG3617|consen 370 AAVNT 374 (1416)
T ss_pred hhhhh
Confidence 44443
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.40 E-value=0.00027 Score=78.55 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=132.4
Q ss_pred cEEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC-----------c
Q 005096 146 SINRVLWTPTGRRLITG-SQSG----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-----------A 209 (715)
Q Consensus 146 ~I~~l~~spdg~~Latg-s~dg----~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg-----------~ 209 (715)
.+..+++||||++||.+ +..| .|+|+|+++++.+....... ....+.|..|++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44578899999999866 3333 59999999997765322111 112399999988876554332 3
Q ss_pred EEEEeCCCCce--eeeecCCCC-C-eEEEEEecCCCEEEEEEC---C-CcEEEEECCCC----eeEEEecccCCce-EEE
Q 005096 210 IKYWQNNMNNV--KANKSAHKE-S-VRDLSFCRTDLKFCSCSD---D-TTVKVWDFARC----QEERSLTGHGWDV-KSV 276 (715)
Q Consensus 210 I~iwd~~~~~~--~~~~~~h~~-~-I~~l~~spd~~~Las~s~---D-g~V~iwdl~~~----~~~~~l~~~~~~I-~si 276 (715)
|++|++.+... ...+..... . ...+..+.|+++|+..+. + ..|++.|+... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 77888776532 233333332 2 678889999999776443 2 35788888764 2333333333333 344
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEECCCCce---eEEeccCCC--ceEEEEEcCCCCEEEEE-ECCC--eEEEEECCCCe
Q 005096 277 DWHPTKSLLVSGGK---DSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTA-SKDQ--IIKLYDIRAMK 345 (715)
Q Consensus 277 ~~spdg~~L~sgs~---Dg~I~iwDl~s~~~---~~~~~~~~~--~I~sl~~spdg~~Lasg-s~dg--~I~iwDl~t~~ 345 (715)
... .+.+++.... ++.|...++.+... ...+-.+.. .+..+.. .+++|+.. ..++ .|+++|+..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 444 3334443322 35677778876652 223433444 3555554 34555544 3444 68899998344
Q ss_pred EEEEee-cCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCCc
Q 005096 346 ELESFR-GHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETP 389 (715)
Q Consensus 346 ~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~~ 389 (715)
....+. ...+.|..+........++++.+.- ++|+.||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 444443 3344466666555444454444432 4577777766654
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.34 E-value=5.3e-05 Score=83.65 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=112.6
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE---eCC-CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG---DDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg---s~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
.+.+-|.+ +.....+......+..-+|++++..++.. ... ..+.++++++++...... ....-..-+|++|+++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444444 45555555556677788999999876543 222 458899999876555443 3444456789999988
Q ss_pred EEEEE-CCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FCSCS-DDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 Las~s-~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+.+. .|+. |+++|+...... .+....+.-+.=.|+|||+.|+..++ .| .|.++|++.+.. ..+......-.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 77654 4554 667777766533 34444444447789999998877654 33 467777775544 33332333333
Q ss_pred EEEEcCCCCEEEEEECC-Ce--EEEEECCCCeE
Q 005096 317 CVKWNQNGNWVLTASKD-QI--IKLYDIRAMKE 346 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d-g~--I~iwDl~t~~~ 346 (715)
+-.|++||++|+..+.+ |. |.+.|+.++..
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 88899999999987743 43 66777766554
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.34 E-value=6.8e-05 Score=82.76 Aligned_cols=202 Identities=14% Similarity=0.172 Sum_probs=124.7
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE---CC-CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DD-TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s---~D-g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+.+-|.+ +.....+......+..-+|++++..++..+ .. ..++++|+++++....+. ..+.-..-+|+|||+.|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3333433 444445555566677788999987765442 22 359999998887766655 34445578899999977
Q ss_pred EEE-eCCCc--EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEE
Q 005096 286 VSG-GKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 286 ~sg-s~Dg~--I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
+.+ ..|+. |+++|+.++. +..+....+.-+.-.|+|||++|+..+.. | .|.++|++.... ..+......-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 655 44554 6666888666 44455445555578899999999877643 3 577777765443 444433333337
Q ss_pred EEEccCCCCEEEEEeC-CCc--EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 360 LAWHPFHEEYFVSGSL-DGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~-DG~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
-.|++ ++++|+..+. +|. |.+.|+.+... .+... .......-+|.++++.|+..+.
T Consensus 331 p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 331 PVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCC-CCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 88999 5666555543 454 66666655553 23322 2333445567777766665544
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00089 Score=73.50 Aligned_cols=261 Identities=12% Similarity=0.079 Sum_probs=166.7
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEE-
Q 005096 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS- 245 (715)
Q Consensus 168 I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las- 245 (715)
+.+++..+.+....+..+. ....+.+.+++..+.+.. ....+.+.+................-..++++++++.++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5666655555554444333 455677777775554333 2234555554422222212211134457788888875544
Q ss_pred EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 246 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 246 ~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
...++.|.+.|..+.+......... .-..++++++++.++++.. ++.+.+.|..+.+.+.+....... ..+++++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 4456899999987777666654332 6678999999987777665 688999999988887775433334 8899999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEE-E---eecCCCCeEEEEEccCCCCEEEEEeCC--CcEEEEEcCCCCceEEEee
Q 005096 323 NGNWVLTAS-KDQIIKLYDIRAMKELE-S---FRGHRKDVTALAWHPFHEEYFVSGSLD--GSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 323 dg~~Lasgs-~dg~I~iwDl~t~~~~~-~---~~~h~~~V~~l~~sp~~~~~l~sgs~D--G~I~iwd~~~~~~~~~~~~ 395 (715)
+++.++++. .++.|.++|..+..... . ...-...-..+.+++++.+..++...+ +.+.+.|..+.........
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999777665 78899999977665553 1 112233456788888555455555444 5888888877655444222
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECC-CeEEEEecCCCC
Q 005096 396 VHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRPG 431 (715)
Q Consensus 396 ~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl~~~~ 431 (715)
........+.++++|..+.+.... +.+.+-|.....
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 111145678899999988887544 778777765433
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.00048 Score=75.96 Aligned_cols=115 Identities=21% Similarity=0.194 Sum_probs=81.4
Q ss_pred CceEEEEEcC-CCCEEEEE----ECCCe----EEEEECCCCeE--EEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 313 NMVLCVKWNQ-NGNWVLTA----SKDQI----IKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 313 ~~I~sl~~sp-dg~~Lasg----s~dg~----I~iwDl~t~~~--~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
....++.||- +.+.+.+. +.+|. ..+|++...+. +... ......|.++++++ +++.|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3446677776 34444443 23443 34566654332 2111 14677899999999 899999999999999
Q ss_pred EEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 381 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+||...+..... ...-..+.++|+++|.+|++|+..|.+.+||+....
T Consensus 285 LyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999977643322 234568899999999999999999999999986533
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.30 E-value=0.00049 Score=71.85 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=130.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCC-CCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee---------
Q 005096 154 PTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--------- 223 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~--------- 223 (715)
..++.|+.|+++| |+++++. ..+..+... ...|..+...++-+.|++-+ |+.|+++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577899999999 9999983 333333333 23399999998877776654 49999999876433221
Q ss_pred -----ecCCCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCC-----eeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 224 -----KSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 224 -----~~~h~~~I~~l~--~spd~~~Las~s~Dg~V~iwdl~~~-----~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.......+..++ -...+...+++....+|.+|.+... +..+.+. ....+.+++|. ++.|+++..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111222344444 1123333334444558888887542 3444444 44778999998 6678877764
Q ss_pred CcEEEEECCCCceeEEeccC------------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeE
Q 005096 292 SLVKLWDAKSGRELCSFHGH------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVT 358 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~------------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~ 358 (715)
+ ..+.|+.++.....+... ...+..+.+. ++.+|++- |..-.+.|.. |+..+ ..-.......
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSSAPQ 232 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-CCcCcccEEEcCCchh
Confidence 4 888999976554333211 1223444443 44555543 3344444543 44433 2223455667
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~ 391 (715)
++++. ..+|++.+. +.|.||++.++..+.
T Consensus 233 ~~~~~---~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 233 SVAYS---SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred EEEEE---CCEEEEECC-CEEEEEECcCCcEEE
Confidence 77774 356666555 459999998885543
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=3.6e-05 Score=85.62 Aligned_cols=154 Identities=11% Similarity=0.201 Sum_probs=106.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-- 262 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-- 262 (715)
...|.--+++..+++|+.|+..|.|++|+...+....... +....+..++++.++.++|+|+..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445455666788999999999999999988776544333 3445566677788888899999999999998865321
Q ss_pred ---EEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCceEEEEEcCCCCEEEEEECCC
Q 005096 263 ---ERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 263 ---~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~----~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
+... ..|...|++++|++|+..|++|...|+|.+-.+++. -....+....+.|..|.+. ++ +|++++.-.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhhhhh
Confidence 1111 236789999999999999999999999999888762 1122333456677777765 33 344333232
Q ss_pred eEEEEECC
Q 005096 335 IIKLYDIR 342 (715)
Q Consensus 335 ~I~iwDl~ 342 (715)
..+++++
T Consensus 191 -~~Lc~tE 197 (726)
T KOG3621|consen 191 -CILCQTE 197 (726)
T ss_pred -hheeecc
Confidence 2345554
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.24 E-value=0.00089 Score=68.37 Aligned_cols=200 Identities=10% Similarity=0.144 Sum_probs=117.0
Q ss_pred EEecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...+.+-...|+.|+|+++.+ ++++....+.|..++. +++.++.+... .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 446777777799999999866 4556667788888886 47777777654 36688999988887777766789999998
Q ss_pred CCCCc----e--eeee-----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---CeeEEEe--------cccCCc
Q 005096 215 NNMNN----V--KANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERSL--------TGHGWD 272 (715)
Q Consensus 215 ~~~~~----~--~~~~-----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---~~~~~~l--------~~~~~~ 272 (715)
+.... . ...+ ..++..+..|+|.+.++.|+++-...-..||.+.. ...+... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 73321 1 1111 12445689999999888888887776666766643 1111111 123456
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCC---------CceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 273 VKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 273 I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---------~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
+.++++++... +++....+..|.++| .+|+.+..+.-.. .....|+|.++|+ |++.++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 88999998654 666667778899999 5577665553222 2467899999986 4555566665554
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.0005 Score=70.15 Aligned_cols=198 Identities=10% Similarity=0.195 Sum_probs=114.8
Q ss_pred EEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 005096 181 ILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~ 258 (715)
.+.+-...+..|+|.++.+ ++++....+.|..++.+ ++++..+... ......|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999866 55667777888888864 6666665433 4678899998877766666568999999883
Q ss_pred CCe------eEEEec-----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEe--------ccCCCceE
Q 005096 259 RCQ------EERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSF--------HGHKNMVL 316 (715)
Q Consensus 259 ~~~------~~~~l~-----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s---~~~~~~~--------~~~~~~I~ 316 (715)
... ....+. .++..+..|+|++.++.|+++-+..-..||.++. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111121 2445689999999988888887777677776653 2222111 12344688
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEeecCC---------CCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 317 CVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 317 sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~---------~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
++++++. +++++....+..|.++| .+|+.+..+.-.. ..--.|+|.+ +++++++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 9999995 55666677888999999 6688777665433 2467899987 5554444 445555444
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0015 Score=71.81 Aligned_cols=260 Identities=13% Similarity=0.050 Sum_probs=168.4
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceee
Q 005096 146 SINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~ 222 (715)
....+.+.+++..+.+... ...+.+.+.. ......+..-. ..-..++++++++.+ ++...+..|.+.|.++.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4566777888865554433 2245555554 22222211111 334567888888755 455556899999987777666
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwD 298 (715)
....-. .-..++++++++.++++.. ++++.+.|-.+.+.+......... ..++++++++.++++. .++.|.++|
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 553322 6678999999988877765 688999999888888775543334 8999999999666655 788999999
Q ss_pred CCCCceeE-E---eccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCC-CeEEEEEccCCCCEE
Q 005096 299 AKSGRELC-S---FHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYF 370 (715)
Q Consensus 299 l~s~~~~~-~---~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~-~V~~l~~sp~~~~~l 370 (715)
.++..... . ...-...-..+.++++++++++.... +.+.+.|..++........-.. ....+.++| .+..+
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AGKAA 267 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CCCEE
Confidence 77655442 1 01122334678899999977766544 5899999998887776322222 567788899 55555
Q ss_pred EEE-eCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCC
Q 005096 371 VSG-SLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPI 409 (715)
Q Consensus 371 ~sg-s~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spd 409 (715)
.+. +..+.+.+.|..+.......... ....+..+++.+.
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 544 55578888888776554433321 1223555555543
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.21 E-value=0.0012 Score=73.34 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=131.6
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-----------cE
Q 005096 189 IRSMVWSHNDNWMVSG-DDGG----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----------TV 252 (715)
Q Consensus 189 V~~l~~spdg~~L~tg-s~dg----~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-----------~V 252 (715)
+..+++++|+++||.+ +..| .|+|+|+++++.+..... ......+.|..|++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999998754 3444 499999999976543211 11223499999988877665433 37
Q ss_pred EEEECCCCeeE--EEecccCCc--eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----ceeEEeccCCCce-EEEE
Q 005096 253 KVWDFARCQEE--RSLTGHGWD--VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG----RELCSFHGHKNMV-LCVK 319 (715)
Q Consensus 253 ~iwdl~~~~~~--~~l~~~~~~--I~si~~spdg~~L~sgs~D----g~I~iwDl~s~----~~~~~~~~~~~~I-~sl~ 319 (715)
++|++.+.... ..+...... ...+.++.|+++|++.... ..|.+.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888765433 444433332 5688899999987764432 34788888864 2333333333333 3344
Q ss_pred EcCCCCEEEEEE---CCCeEEEEECCCCeE---EEEeecCCC--CeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCCc
Q 005096 320 WNQNGNWVLTAS---KDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 389 (715)
Q Consensus 320 ~spdg~~Lasgs---~dg~I~iwDl~t~~~---~~~~~~h~~--~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~ 389 (715)
.. ++.+++... .++.|...++.+... ...+..+.. .+..+... ++.+++....++ .|+++++..+..
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcE
Confidence 33 444444333 335777788877652 224444555 35555543 556666666666 478888873333
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEE-EE-EECC--CeEEEEecCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLL-CS-GSND--HTTKFWCRNRP 430 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L-~s-gs~D--g~I~iWdl~~~ 430 (715)
...+.....+.|..+....++..| ++ .|-- ++|..||+.+.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 334433334556666655554333 32 3332 45666666543
No 355
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=4.1e-06 Score=59.39 Aligned_cols=36 Identities=31% Similarity=0.741 Sum_probs=34.2
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN 172 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd 172 (715)
..++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457899999999999999999999999999999997
No 356
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00057 Score=79.89 Aligned_cols=304 Identities=16% Similarity=0.106 Sum_probs=156.3
Q ss_pred EeccCCCEEEEEEcCCCCEEEEEeCCCc--EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE------CCCc--
Q 005096 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS------DDTT-- 251 (715)
Q Consensus 182 l~~h~~~V~~l~~spdg~~L~tgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s------~Dg~-- 251 (715)
...+...+..+.|++++..++..+.++. ..+|.+.... .+..+...|....|++++..++... .|+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4456778889999999999987763332 3444333221 3344556677788888887776621 1222
Q ss_pred -----EEEEECCCC-e-----------eEEEecccCCceEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEE
Q 005096 252 -----VKVWDFARC-Q-----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCS 307 (715)
Q Consensus 252 -----V~iwdl~~~-~-----------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~-------I~iwDl~s~~~~~~ 307 (715)
+.+|....+ + ...........+....++.+++.++....+.. ..++...+ ..+..
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 210 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN-GELES 210 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC-CceEE
Confidence 333333222 1 11122223445666777766676665544332 23333323 33444
Q ss_pred eccCCCceEEEEEcCCCCEEEEEECC-C-------eEEEEECCCCeEEEEeecCC--CCeEEEEEccCCCCEEEEEeC-C
Q 005096 308 FHGHKNMVLCVKWNQNGNWVLTASKD-Q-------IIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVSGSL-D 376 (715)
Q Consensus 308 ~~~~~~~I~sl~~spdg~~Lasgs~d-g-------~I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~~~l~sgs~-D 376 (715)
+......+..+.|..+++.++..+.. . .+.++|.+.++....+...+ .....+...-.+..+++++.. .
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecCC
Confidence 55556668899999999865554422 2 24444422222222111111 111111111224445555554 6
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEE-ECC---CeEEEEecCCCCCcccccccccCCccccceeeE
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG-SND---HTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAV 452 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg-s~D---g~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~ 452 (715)
|...++++................|..+++ +++.|+.. +.. ..+.+|+.....+.... . ......+
T Consensus 291 g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~~~~~~~~~~-~-~~~~~~~------ 360 (620)
T COG1506 291 GSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDRGEEAKLTSS-N-NSGLKKV------ 360 (620)
T ss_pred CceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcCCCceEEeec-c-ccccccc------
Confidence 777777776544444555444466777766 55444443 222 34566654111111100 0 0000000
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCCCCCC-CCCCcccCCCcCCCCCCCCccccCCCCCCCCC-CCCCCCCC
Q 005096 453 FAGRMPGNFPLPEGPTTPGPFAPGLTRNEG-TIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL-GAPPLPPG 522 (715)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~g~gr~~g-tv~Gy~~~~~l~~p~~~~~~~~~~~~~~~~~~-~~p~~~~~ 522 (715)
...-+...-+..++| +++||-+. |.+++.++|||+-+.+ |||-..-+
T Consensus 361 ---------------~~~~~e~~~~~~~dG~~i~~~l~~--------P~~~~~~k~yP~i~~~hGGP~~~~~ 409 (620)
T COG1506 361 ---------------KLAEPEPVTYKSNDGETIHGWLYK--------PPGFDPRKKYPLIVYIHGGPSAQVG 409 (620)
T ss_pred ---------------ccCCceEEEEEcCCCCEEEEEEec--------CCCCCCCCCCCEEEEeCCCCccccc
Confidence 011111111233334 99999998 9999999999999999 88855544
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.00087 Score=70.77 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=135.2
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC--
Q 005096 150 VLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-- 226 (715)
Q Consensus 150 l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~-- 226 (715)
-.|.++...|+ +--..+.|.-||..+++... +. +.+.+.++....++..|+++.. -+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 45677776444 55567889999887654332 22 2344456655555666666543 356666655554222211
Q ss_pred ---CCCCeEEEEEecCCCEEEEEEC-----------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-
Q 005096 227 ---HKESVRDLSFCRTDLKFCSCSD-----------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (715)
Q Consensus 227 ---h~~~I~~l~~spd~~~Las~s~-----------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D- 291 (715)
.....+++.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1245677888888887665443 133444443 456666666555666799999999887777654
Q ss_pred CcEEEEECCC--C----ce-eEEeccCCCceEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 292 SLVKLWDAKS--G----RE-LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 292 g~I~iwDl~s--~----~~-~~~~~~~~~~I~sl~~spdg~~Lasgs~dg-~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
+.|.-|++.. + +. ...+....+..-.++...+|++.+++..+| .|.+|+.. ++.+..++.....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7788887652 1 11 122223345566778888888776555454 99999988 99999999888889999985
Q ss_pred cCCCCEEE
Q 005096 364 PFHEEYFV 371 (715)
Q Consensus 364 p~~~~~l~ 371 (715)
-.+.+.|+
T Consensus 264 G~~~~~L~ 271 (307)
T COG3386 264 GPDLNTLY 271 (307)
T ss_pred CCCcCEEE
Confidence 43334333
No 358
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.15 E-value=6.4e-06 Score=58.35 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=36.3
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
+.+.++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.15 E-value=0.00092 Score=73.98 Aligned_cols=207 Identities=9% Similarity=0.080 Sum_probs=112.3
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe------eEEEecccCCceEEEEEcCCC
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~------~~~~l~~~~~~I~si~~spdg 282 (715)
.|+||+.... .+..+.-..+.|.++.|+.+ ..|++...||++++||+.... .+.........+..+.+..+|
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 3677765433 33333333388999999875 556677899999999985333 111111111222233333344
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eeEEecc----------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 283 SLLVSGGKDSLVKLWDAKSGR-ELCSFHG----------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~-~~~~~~~----------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
+++-..++.|.+.+-.... ..+.+.. .........++.+....+....++.|.+.|-...+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 3333344545444322111 1111110 000000123444455555555555666444332211 1
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...+.+..+++|| ++++||.-..+|.+.|.+.+-.+...++..........+.|.-++..++.- +..|.+..
T Consensus 214 ~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 214 DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1346899999999 899999999999999988766665555554445677788888765444333 34555554
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.15 E-value=0.0013 Score=68.55 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=125.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe--------
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-------- 266 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-------- 266 (715)
..++.|++|+++| |.++++.. ....... ....|..+...++-+.|++-+ |+.|+++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999988 88888832 2332222 233399999998877777665 499999998654433311
Q ss_pred ------cccCCceEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----ceeEEeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 267 ------TGHGWDVKSVD--WHPTKSLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 267 ------~~~~~~I~si~--~spdg~~L~sgs~Dg~I~iwDl~s~-----~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
......+..++ -...+...++......|.||..... +.++++. -...+.+++|. ++.|+++..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 11223344444 1123333333444468888877542 3445554 45778999998 6678877744
Q ss_pred CeEEEEECCCCeEEEEeecCC------------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 334 QIIKLYDIRAMKELESFRGHR------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~------------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
...+.|+.++.....+.... ..+..+... ++.+|++. |..-.+.|..........+. -....
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p 231 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAP 231 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcCcccEEE-cCCch
Confidence 47788998766544432211 223333443 34555543 33333334432221111111 23356
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 402 ~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.++++. ..+|++.+. +.|.||++...
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCC
Confidence 667664 456777665 55999999765
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.00041 Score=74.33 Aligned_cols=211 Identities=15% Similarity=0.206 Sum_probs=124.4
Q ss_pred CeEEEEeCCCCceEEEEeccC-CCEEEEE---EcCC----CCEEEEEeC----------CCcEEEEeCCCC-----ceee
Q 005096 166 GEFTLWNGQSFNFEMILQAHD-HAIRSMV---WSHN----DNWMVSGDD----------GGAIKYWQNNMN-----NVKA 222 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~-~~V~~l~---~spd----g~~L~tgs~----------dg~I~iwd~~~~-----~~~~ 222 (715)
..|+|.|..+.+.+..+.... ..+.+++ +..+ ..+|++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368999988888777665433 3355443 3322 467777642 288999998884 2221
Q ss_pred e-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 223 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 223 ~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
. .....+.|.+|+-. ++ +|+++. ++.|.+|++...+ ....- ......+.++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 23457788888877 33 444444 4789999997766 33222 2233366666665 669999998888887754
Q ss_pred CC-CceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-------C--eE--EEEeecCCCCeEEE---EE
Q 005096 300 KS-GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------M--KE--LESFRGHRKDVTAL---AW 362 (715)
Q Consensus 300 ~s-~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-------~--~~--~~~~~~h~~~V~~l---~~ 362 (715)
+. .+.+..+ .....+++++.|-.|++.++++..+|.|.++.... + +. +..+. ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence 43 2323333 22456789999986667999999999999998752 1 12 22222 23456666 33
Q ss_pred ccC--CCC-----EEEEEeCCCcEEEE
Q 005096 363 HPF--HEE-----YFVSGSLDGSIFHW 382 (715)
Q Consensus 363 sp~--~~~-----~l~sgs~DG~I~iw 382 (715)
.+. +.+ .++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 331 112 47777788887743
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=0.0006 Score=79.58 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=100.2
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCC-eEEEEEec-----CCCEEEEEECCCcEEEEECCCCe--eEEE--
Q 005096 197 NDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQ--EERS-- 265 (715)
Q Consensus 197 dg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp-----d~~~Las~s~Dg~V~iwdl~~~~--~~~~-- 265 (715)
+.++|+.. .....|+-.|++.++++..+..+... |..++-.. +....++|-.++.|..||.+-.. .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999887755 55554321 12345677788899999986432 2211
Q ss_pred -ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 266 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 266 -l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
........+|++-+.+| +||+|+.+|.||+||--..+....+.+...+|..|..+.||+||++.| +..|.|+|.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11244567788877665 689999999999999543333444556788999999999999999887 556777775
No 363
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.06 E-value=0.0066 Score=70.50 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=121.1
Q ss_pred EEEEECCCCeeEEEeccc----CCceEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceeEEeccC--CCc
Q 005096 252 VKVWDFARCQEERSLTGH----GWDVKSVDWHPT-KSLLVSGGK----------DSLVKLWDAKSGRELCSFHGH--KNM 314 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~----~~~I~si~~spd-g~~L~sgs~----------Dg~I~iwDl~s~~~~~~~~~~--~~~ 314 (715)
++++|-++.+.+....-. ...|.++.|..| +.++++|.. .|.|.||.....+.+.....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 666676665554433211 123556668877 567777652 477888877764444443322 333
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--eEE
Q 005096 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--QVE 392 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--~~~ 392 (715)
+.++..- +|++||. -+..|++|++.+.+.++.-..+...+..+...- .++.|++|..-+.|.+...+..+. ...
T Consensus 832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 4444322 5665554 467899999999988888888888888888877 888999999888888776655542 222
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCC
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQN 443 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 443 (715)
...-+...++++.+-.+ ..++.+..+|.+.+-..+....+..++......
T Consensus 908 ArD~~p~Wmtaveil~~-d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~ 957 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDD-DTYLGAENSGNLFTVRKDSDATTDEERQILEEV 957 (1096)
T ss_pred ehhhCccceeeEEEecC-ceEEeecccccEEEEEecCCCCchhhhhcccce
Confidence 23335667888887754 455666778999998887666655555444433
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.04 E-value=0.0044 Score=66.38 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=119.9
Q ss_pred eCCCCceEEEEeccCCCEEEE-----EEcCCCCEEEE-EeCCCc--EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 172 NGQSFNFEMILQAHDHAIRSM-----VWSHNDNWMVS-GDDGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 172 d~~~~~~~~~l~~h~~~V~~l-----~~spdg~~L~t-gs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
|-.++..+..+.........+ +|..||+.|+. +..||. +.+.|+++++................++++++.|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777777776655544444 56678866654 444554 6666888887766554433434456778888888
Q ss_pred EEEECCCcEEEEECCCCeeEEEecccCCceEEEEE--cCCCCEEEEEeC----------------------CCcEEEEEC
Q 005096 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW--HPTKSLLVSGGK----------------------DSLVKLWDA 299 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~--spdg~~L~sgs~----------------------Dg~I~iwDl 299 (715)
+-...+..|+..|+++.+....+......+-...| +.|+..++..-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 77777778999999998877777666666654555 445655543211 134666788
Q ss_pred CCCceeEEeccCCCceEEEEEcCCC-CEEEEEEC---CC-eEEEEECCC-CeEEEEeecCC--CCeEEEEEccCCCCEEE
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASK---DQ-IIKLYDIRA-MKELESFRGHR--KDVTALAWHPFHEEYFV 371 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~---dg-~I~iwDl~t-~~~~~~~~~h~--~~V~~l~~sp~~~~~l~ 371 (715)
++|+....+. ...++..+.|+|.. .+|+.|-+ +. .-|||-+++ +..++.+..+. ..+..=-|.+++..++.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8877655554 67789999999954 45555442 11 124554432 44444443332 23444467885544444
Q ss_pred EEe-C---CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 372 SGS-L---DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 372 sgs-~---DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
.+. . +..|.-+|..+..... +. .......+-.++||.++|--+.|.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~-~~--~~p~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRR-LM--EMPWCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEE-EE--EE-SEEEEEE-TTSSEEEEEE---
T ss_pred EeecCCCCceEEEeeCCCCCCceE-EE--eCCceeeeEEcCCCCEEEecCCCC
Confidence 333 2 2345556776654432 11 122455677788999887766553
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.03 E-value=0.0014 Score=70.33 Aligned_cols=211 Identities=14% Similarity=0.107 Sum_probs=122.3
Q ss_pred cEEEEeCCCCceeeeecC-CCCCeEEEEEec-------CCCEEEEEEC----------CCcEEEEECCCC----eeEEEe
Q 005096 209 AIKYWQNNMNNVKANKSA-HKESVRDLSFCR-------TDLKFCSCSD----------DTTVKVWDFARC----QEERSL 266 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp-------d~~~Las~s~----------Dg~V~iwdl~~~----~~~~~l 266 (715)
.|+|.|..+.+.+..+.. ..+.+.+++... ...+|++|+. .|.|.++++.+. ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 567777766655544432 233444444332 2456776653 288999999873 122222
Q ss_pred --cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 267 --TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 267 --~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
....+.|++|+-. +.+|+++. ++.|++|++...+ .+..-. .....++++... +++|++|.....|.++..+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2356789988877 33455444 4889999998777 332221 123356666655 6699999988888877544
Q ss_pred C-CeEEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------C-ceEEEeec-cCCCEEEE---EEc
Q 005096 343 A-MKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T-PQVEIHNV-HDNTVWDL---AWH 407 (715)
Q Consensus 343 t-~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~-~~~~~~~~-h~~~V~~l---~~s 407 (715)
. .+.+..+. .....++++.+..++ +.+++++.+|.|.++..... . .+...... ....|+++ ++.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 3 33333332 235568888888634 69999999999999987631 1 22222222 34567777 444
Q ss_pred C--CC------CEEEEEECCCeEEEE
Q 005096 408 P--IG------YLLCSGSNDHTTKFW 425 (715)
Q Consensus 408 p--dg------~~L~sgs~Dg~I~iW 425 (715)
+ .+ ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 12 248888899998844
No 366
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.02 E-value=0.008 Score=63.17 Aligned_cols=271 Identities=8% Similarity=0.076 Sum_probs=123.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE--ecc---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l--~~h---~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
-...+.+|.|..+..-+++|. .+.|.. ..+.++.-... ... .....+|.|.. .+.+++| ..+. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEEEE-ESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEEEE-ECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEecCC
Confidence 345789999995555555554 454322 22222211111 111 12356777763 3344444 4453 3333344
Q ss_pred Cceeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 218 NNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 218 ~~~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
++.-..+. ........+....++ .+..++..|.|+.=. +.++. ..........+..+..++|+++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 43322221 122333444444444 344444555443321 22222 2223445577889999999998888877666
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEE----eecCCCCeEEEEEccCCCC
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI-RAMKELES----FRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl-~t~~~~~~----~~~h~~~V~~l~~sp~~~~ 368 (715)
+.-||--...-...-+.....|.++.|++++.+.+++ ..|.|++=|. ...+.... +....-.+.+++|.+ ++.
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~ 245 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNE 245 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCC
Confidence 6677754322222222346789999999998866654 8899988872 22222222 112334588999997 566
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
++++|+ .|.|. ...+.++.-.+... .-...++.+.|..+.+ -.+.+.||.|.-|
T Consensus 246 ~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 666555 45443 34444444333332 2244688899986644 4445568888766
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0006 Score=74.62 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=133.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee-------------------------------------------eee
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------------------------------------ANK 224 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~-------------------------------------------~~~ 224 (715)
.|+++.|+.+...|+++...|.|.||.+..++.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5788999988888999999999988864321100 001
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--c------cCCceEEEEEcC-----CC---CEEEEE
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--G------HGWDVKSVDWHP-----TK---SLLVSG 288 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~------~~~~I~si~~sp-----dg---~~L~sg 288 (715)
....+.|++++.+ |-.++++|..+|.+.|.|++....+..-. . ....|+++.|.- |+ -+|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2335788899887 55689999999999999998777665421 1 234577887752 33 378899
Q ss_pred eCCCcEEEEECC--C-Ccee----EEeccCCCceEEEE-EcCC--------------------CCEEEEEECCCeEEEEE
Q 005096 289 GKDSLVKLWDAK--S-GREL----CSFHGHKNMVLCVK-WNQN--------------------GNWVLTASKDQIIKLYD 340 (715)
Q Consensus 289 s~Dg~I~iwDl~--s-~~~~----~~~~~~~~~I~sl~-~spd--------------------g~~Lasgs~dg~I~iwD 340 (715)
++.|.+.+|.+. . +.-. .....+.+.|..|. |+.+ -.-+++.+.+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999774 1 2111 11123455555554 3211 12244445578899999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEc----cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEE
Q 005096 341 IRAMKELESFRGHRKDVTALAWH----PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 341 l~t~~~~~~~~~h~~~V~~l~~s----p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L 413 (715)
.-+.+...+..........+++. ...+..|++-..+|.|++|.+-.-+.+...... ....+...+++.+|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98887766555222233334442 125677888899999999999876665554431 11234456778888866
Q ss_pred EEEECCCeEEEEec
Q 005096 414 CSGSNDHTTKFWCR 427 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl 427 (715)
+-.+ ...+.+|.+
T Consensus 322 ~~~g-psE~~l~sv 334 (395)
T PF08596_consen 322 YWTG-PSEIQLFSV 334 (395)
T ss_dssp EE-S-SSEEEEEEE
T ss_pred EEeC-cccEEEEEE
Confidence 6654 445555544
No 368
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.00 E-value=0.0027 Score=69.38 Aligned_cols=89 Identities=13% Similarity=0.292 Sum_probs=59.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EeCCC-----CceEEEEec---cC--CCEEEEEEcC-----------CCCEEEEE
Q 005096 149 RVLWTPTGRRLITGSQSGEFTL---WNGQS-----FNFEMILQA---HD--HAIRSMVWSH-----------NDNWMVSG 204 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~I---wd~~~-----~~~~~~l~~---h~--~~V~~l~~sp-----------dg~~L~tg 204 (715)
+++.++++++||.+..+..+.+ |+.+. ........+ ++ +.|+++.|-+ |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988876665 64311 112222211 11 4677776633 35788999
Q ss_pred eCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec
Q 005096 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 238 (715)
..+|.|++|.. ++.++..-..|.+.|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999975 5556555567788888877743
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.99 E-value=0.00037 Score=81.28 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=131.6
Q ss_pred ECCCcEEEEECCCCeeEEEecccCCc-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc-eeEEec----cCCCce
Q 005096 247 SDDTTVKVWDFARCQEERSLTGHGWD-VKSVDWHP-----TKSLLVSGGKDSLVKLWDAKSGR-ELCSFH----GHKNMV 315 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~~~~l~~~~~~-I~si~~sp-----dg~~L~sgs~Dg~I~iwDl~s~~-~~~~~~----~~~~~I 315 (715)
.....|+-.|+++++.+..+..+... |.+++-.. +..-.++|-.++.|..||.|-.. .+..-. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34678999999999999999877654 55554332 12345677788899999998532 222111 234567
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC--CC------
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG--HE------ 387 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~--~~------ 387 (715)
+|++-+.+| +||+|+.+|.||+||--..+....+.+....|..|.++. ++++|++.+. ..|.+++.. .+
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~-tyLlLi~t~~~~g~~~g~~ 657 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATCK-TYLLLIDTLIKDGKNSGKL 657 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEeec-ceEEEEEEeeecCCccCcc
Confidence 888877666 699999999999999533333344557789999999999 6776665553 466666642 10
Q ss_pred ----------C---ceEEEeeccC--------CC--EEEEEEcC--C-CCEEEEEECCCeEEEEecCCCCCccccccccc
Q 005096 388 ----------T---PQVEIHNVHD--------NT--VWDLAWHP--I-GYLLCSGSNDHTTKFWCRNRPGDTARDKFNMG 441 (715)
Q Consensus 388 ----------~---~~~~~~~~h~--------~~--V~~l~~sp--d-g~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~ 441 (715)
+ ..+.+...|. .. -+...|+. + ....++++....+.+|++.+-......++.+.
T Consensus 658 GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~~Y~ik 737 (794)
T PF08553_consen 658 GFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKKDPYQIK 737 (794)
T ss_pred ccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCCCCceEEE
Confidence 0 0111111121 11 22344542 1 13344445567899999987666666666554
Q ss_pred CCccccceeeEEeecCCCCccCCCCC
Q 005096 442 QNQGYGEQNAVFAGRMPGNFPLPEGP 467 (715)
Q Consensus 442 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 467 (715)
.... ......|.+..+..+++....
T Consensus 738 ry~~-~V~~dnF~fg~d~~vival~~ 762 (794)
T PF08553_consen 738 RYDE-NVVADNFKFGSDKNVIVALPN 762 (794)
T ss_pred EcCC-ceEEccceeCCCCcEEEEccc
Confidence 4332 334444555555555544443
No 370
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.96 E-value=0.017 Score=67.28 Aligned_cols=284 Identities=12% Similarity=0.122 Sum_probs=157.5
Q ss_pred CCCccEEEEEEcCCC------CEEEEEeCCCeEEEEe-CCCCceEEEE--e--ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 142 KNRCSINRVLWTPTG------RRLITGSQSGEFTLWN-GQSFNFEMIL--Q--AHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 142 ~H~~~I~~l~~spdg------~~Latgs~dg~I~Iwd-~~~~~~~~~l--~--~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
.-...|.|++++|-| +++++|..+..+.+.- +.+...+... . .-...|.-.++--|..+|+++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 345689999999742 3788888776655443 3333322222 1 112445555666678899999999998
Q ss_pred EEEeCC--CCceeeee--cCCCCCeEEEEEecCCCEEEEEECC-------------------------------------
Q 005096 211 KYWQNN--MNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDD------------------------------------- 249 (715)
Q Consensus 211 ~iwd~~--~~~~~~~~--~~h~~~I~~l~~spd~~~Las~s~D------------------------------------- 249 (715)
..|.++ ++...... .....++.--.|+..++.-+.|..|
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 776543 33222111 1112223222333222222222222
Q ss_pred -----CcEEEEECCCCee--EEEecccCCceEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCCceeEEe
Q 005096 250 -----TTVKVWDFARCQE--ERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------SLVKLWDAKSGRELCSF 308 (715)
Q Consensus 250 -----g~V~iwdl~~~~~--~~~l~~~~~~I~si~~spdg~~L~sgs~D--------------g~I~iwDl~s~~~~~~~ 308 (715)
+.+++.-++.-.+ ++++. .......+++.+...++++.+.- ..++++|-++-+.+...
T Consensus 688 ~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 2233333322111 11211 22345566666533344433321 13667776665544433
Q ss_pred cc----CCCceEEEEEcCC-CCEEEEEE----------CCCeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCEEE
Q 005096 309 HG----HKNMVLCVKWNQN-GNWVLTAS----------KDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 309 ~~----~~~~I~sl~~spd-g~~Lasgs----------~dg~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~l~ 371 (715)
+- ....|.++.|..| +.++++|+ ..|.|.||.+..+..+.....+ ++.+.++..- ++++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE
Confidence 21 1123555668877 67788776 3578888888774444444332 3445554433 677777
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.- +..|++|+..+++.+ ++...+...+..+...-.+..+++|..-+.|.+-..+..+
T Consensus 845 ~I--n~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTEREL-RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ec--CcEEEEEEcccccee-hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 44 458999998776443 4444567788899998899999999998888876654433
No 371
>PRK10115 protease 2; Provisional
Probab=97.90 E-value=0.026 Score=66.66 Aligned_cols=238 Identities=11% Similarity=-0.004 Sum_probs=123.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 005096 145 CSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------GAIKYW 213 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d------g~I~iw 213 (715)
..+..+.||+|+++|+.+... ..|++.|+.+++.+..... ..-..++|++|++.|+.+..+ ..|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~--~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD--NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc--CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 457889999999998876432 3588899988764322211 112469999998877655332 357777
Q ss_pred eCCCC--ceeeeecCCCCCeE-EEEEecCCCEEEEEEC---CCcEEEEECC--CCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 214 QNNMN--NVKANKSAHKESVR-DLSFCRTDLKFCSCSD---DTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 214 d~~~~--~~~~~~~~h~~~I~-~l~~spd~~~Las~s~---Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. ++.....+.........+. +.. ..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88877 33334433333333 3333447777655443 4578888852 3332222222222222222 222 333
Q ss_pred EEEeCC--C--cEEEEECCC-CceeEEeccC-CCceEEEEEcCCCCEEEEEECCCeEEE--EECCCCeEEEEee-cCCCC
Q 005096 286 VSGGKD--S--LVKLWDAKS-GRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKL--YDIRAMKELESFR-GHRKD 356 (715)
Q Consensus 286 ~sgs~D--g--~I~iwDl~s-~~~~~~~~~~-~~~I~sl~~spdg~~Lasgs~dg~I~i--wDl~t~~~~~~~~-~h~~~ 356 (715)
+..+.. . .|...++.+ ++....+... ...|..+.++ .+.++++...++.-++ +|+.+. .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333322 2 344445552 2222223322 3468888887 3345556666775544 454332 333333 22222
Q ss_pred eEEEEEc--cCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 357 VTALAWH--PFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 357 V~~l~~s--p~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
+..+.++ .+++.++++.+. -+.|..+|..+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3333343 323445554443 3568888876643
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0081 Score=63.50 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=128.0
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc--
Q 005096 192 MVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-- 268 (715)
Q Consensus 192 l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-- 268 (715)
-.|.++.+.| ++--..+.|.-|+.++++.... .....+.++....++..|+++.. -+++++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3566666644 4445567888888776543332 23344455555555555655543 366677655555333321
Q ss_pred ---cCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-
Q 005096 269 ---HGWDVKSVDWHPTKSLLVSGGK-----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 333 (715)
Q Consensus 269 ---~~~~I~si~~spdg~~L~sgs~-----------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d- 333 (715)
.....+.+.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1244568888999886665433 133444454 456666665555566789999999888877654
Q ss_pred CeEEEEECCC--Ce----E-EEEeecCCCCeEEEEEccCCCCEEEEEeCCC-cEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 334 QIIKLYDIRA--MK----E-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 334 g~I~iwDl~t--~~----~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG-~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
+.|..|++.. +. . ...+....+..-.++... ++++.+++..+| .|.+|+-+ ++.+..+.. ....+++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~ 261 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPA 261 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccce
Confidence 7888887752 11 1 122223345556677766 666665555554 89999887 544444443 446788888
Q ss_pred EcC-CCCEEEEEE
Q 005096 406 WHP-IGYLLCSGS 417 (715)
Q Consensus 406 ~sp-dg~~L~sgs 417 (715)
|-- +.+.|++.+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 864 334444443
No 373
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.82 E-value=0.0035 Score=61.56 Aligned_cols=214 Identities=10% Similarity=0.074 Sum_probs=121.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC--Cceeeee-----cC
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNNM--NNVKANK-----SA 226 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~L~tgs~dg~I~iwd~~~--~~~~~~~-----~~ 226 (715)
.+|.+--..|.|.-||.+..+..+.-.. ...+..+.+--.+ .+.+.++..-.|.-||... ..+..++ ..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 3455555677888899887544332221 1223333332222 2333333333344566322 2222221 11
Q ss_pred CCCCeEEEEEecCCCEEEEEECC---------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE-EeCCCcEEE
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS-GGKDSLVKL 296 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~D---------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s-gs~Dg~I~i 296 (715)
.+.+.++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.++|+.|.+.+.. -+.+-+|.-
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 24566777788999985432222 4455554322 22222222333467899988776554 455666767
Q ss_pred EE--CCCC-----ceeEEeccC----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 297 WD--AKSG-----RELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 297 wD--l~s~-----~~~~~~~~~----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
|| ..+| +.+..++.. .-.--.+++.-+|++.+++-..++|..+|..+++.+.+++.....|++++|--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 87 4444 333333321 111223455668888888888999999999999999999999999999999643
Q ss_pred CCCEEEEE
Q 005096 366 HEEYFVSG 373 (715)
Q Consensus 366 ~~~~l~sg 373 (715)
+-+++++.
T Consensus 265 n~d~~yvT 272 (310)
T KOG4499|consen 265 NLDILYVT 272 (310)
T ss_pred CccEEEEE
Confidence 33444443
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.80 E-value=0.0022 Score=73.94 Aligned_cols=183 Identities=9% Similarity=0.087 Sum_probs=106.2
Q ss_pred CCeEEEEEecCCCEEEEEE------CCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC---------
Q 005096 229 ESVRDLSFCRTDLKFCSCS------DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------- 291 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s------~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D--------- 291 (715)
..+.+.++++|++.++... .|. .|++++... .. ..+.. ....+.-.|++||+.|++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887665 243 455556532 22 33322 2348889999998877777543
Q ss_pred ---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE---EECCCCe-EE---EEeec-CCCCeEEE
Q 005096 292 ---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL---YDIRAMK-EL---ESFRG-HRKDVTAL 360 (715)
Q Consensus 292 ---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i---wDl~t~~-~~---~~~~~-h~~~V~~l 360 (715)
+.|.+.+++.++... .....|..+.||+||+.|+... ++.|+| -....+. .+ ..+.. ....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443332221 2345799999999999998876 577777 4444443 11 11222 33346889
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeE
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTT 422 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I 422 (715)
.|.. ++.++ ++..++...+|.+.-.......... ....+..|+-+++ .|+....++.+
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9997 55544 5555555556655433332222121 2446677776653 45555666643
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.79 E-value=0.0013 Score=75.68 Aligned_cols=215 Identities=8% Similarity=0.017 Sum_probs=108.9
Q ss_pred eEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 167 EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
.+..||..+.+....-...... -.+++. -++.++++|+.+ ..+..||..++.-...-.-...........-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 5677887775533321111111 112222 256677777753 34677887766432211111111111122236
Q ss_pred CCEEEEEECCC-----cEEEEECCCCeeEE--EecccCCceEEEEEcCCCCEEEEEeCCC--------------------
Q 005096 240 DLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------- 292 (715)
Q Consensus 240 ~~~Las~s~Dg-----~V~iwdl~~~~~~~--~l~~~~~~I~si~~spdg~~L~sgs~Dg-------------------- 292 (715)
++..+.|+.++ +|.+||..+.+-.. .+.........+++ ++++.++|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 67777777653 47889986643221 22211122222333 477777777542
Q ss_pred ---cEEEEECCCCcee--EEeccCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCC---CeEEEEeecCCCCeE
Q 005096 293 ---LVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRA---MKELESFRGHRKDVT 358 (715)
Q Consensus 293 ---~I~iwDl~s~~~~--~~~~~~~~~I~sl~~spdg~~Lasgs~d------g~I~iwDl~t---~~~~~~~~~h~~~V~ 358 (715)
.+..||.++.+-. ..+....... +++ .-++++.++|+.+ ..|..||.++ ++.+..+........
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 4677887765322 2221111111 122 2246666666643 2467899876 344444443333333
Q ss_pred EEEEccCCCCEEEEEeCCC--cEEEEEcCCCCc
Q 005096 359 ALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 389 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~ 389 (715)
.+.+ ++.++++|+.|+ .+..||..+.+.
T Consensus 508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH---DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE---CCEEEEEeeecceeehhhcCcccccc
Confidence 3333 788999999888 677777766543
No 376
>PRK10115 protease 2; Provisional
Probab=97.76 E-value=0.035 Score=65.59 Aligned_cols=237 Identities=13% Similarity=0.048 Sum_probs=123.0
Q ss_pred CCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC------CcEEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDD-----GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVW 255 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~-----dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D------g~V~iw 255 (715)
-.+..+.|++|+++|+.+.+ .-.|++.|+.++..+...... .-..++|++|++.|+....+ ..|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999998876432 235788888877533222111 11459999998876655432 368888
Q ss_pred ECCCC--eeEEEecccCCceE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceeEEeccCCCceEEEEEcCCCCEE
Q 005096 256 DFARC--QEERSLTGHGWDVK-SVDWHPTKSLLVSGGK---DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 256 dl~~~--~~~~~l~~~~~~I~-si~~spdg~~L~sgs~---Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
++.+. +....+........ .+..+.|++++++.+. ++.+.+|+.. +++....+.........+. +.. +.|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88877 33444443333333 3344547776665443 3578888853 3332222221222222222 222 334
Q ss_pred EEEECC----CeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-ceEEEeeccCCC
Q 005096 328 LTASKD----QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-PQVEIHNVHDNT 400 (715)
Q Consensus 328 asgs~d----g~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-~~~~~~~~h~~~ 400 (715)
+..+.. ..|...++.+......+..+ ...|..+.+. .+.++++...+|.-+++-++... ....+.......
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCce
Confidence 433322 24444455421222333333 2468888886 45777788888876666554322 222222111223
Q ss_pred EEEEEEc--CC-CCEEEEEEC---CCeEEEEecCC
Q 005096 401 VWDLAWH--PI-GYLLCSGSN---DHTTKFWCRNR 429 (715)
Q Consensus 401 V~~l~~s--pd-g~~L~sgs~---Dg~I~iWdl~~ 429 (715)
+..+.++ .+ +.++++.++ -+.|..||+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 3334444 33 334444433 35666676654
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.75 E-value=0.0095 Score=60.71 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=116.2
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~~~~~h~-~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...+.|..++.++-+.+.-| .|+.+|+++++......... ---..|+.. +++.+...=.++...+||.++.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44677766777777777665 78999999998765543322 122334443 333334444588999999999988888
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-----~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+.- ...=+.++. |++.|+.+.....|+++|.++.+.+.++.-. -..++.+.|- +|...|=.-....|...|
T Consensus 126 ~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred Eec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 763 345566663 5777777777788999999887776665422 1246667776 666666566677888899
Q ss_pred CCCCeEEEEeec---------------CCCCeEEEEEccCCCCEEEEE
Q 005096 341 IRAMKELESFRG---------------HRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 341 l~t~~~~~~~~~---------------h~~~V~~l~~sp~~~~~l~sg 373 (715)
..+|+.+..+.. ...-.+.|++.+..+++++||
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999998876631 124578999999777777776
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.0076 Score=61.48 Aligned_cols=168 Identities=7% Similarity=0.078 Sum_probs=114.7
Q ss_pred EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 182 l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
+.+-...|.++.|+++.+.|++..+...-.||-...++++.++.. .-..-..|.+..++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344456699999999999999888888888887777887776632 1234456788888887777777888888877654
Q ss_pred eeEEEe----------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEecc-------CCCceEEEEE
Q 005096 261 QEERSL----------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL---CSFHG-------HKNMVLCVKW 320 (715)
Q Consensus 261 ~~~~~l----------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~---~~~~~-------~~~~I~sl~~ 320 (715)
..+..+ ...+.....++|++.+..|+++-+-.-+.||.+...... ..... .-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 332221 112556789999999999999888787888776533211 11111 1234778888
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 321 NQ-NGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 321 sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++ .+.+|+.+.+++.|.-.|.+ |+.+..+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 87 45666677778888888876 4444443
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.70 E-value=0.0021 Score=74.06 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=106.1
Q ss_pred ccEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---------
Q 005096 145 CSINRVLWTPTGRRLITGS------QSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 207 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs------~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--------- 207 (715)
..|.+.++++||+.++... .|. .|.+++... .....+.+ ...+.-.|++|++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4688999999999988765 243 455556432 22222232 247888999998877766432
Q ss_pred ---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE---EECCCCee-E---EEec-ccCCceEEE
Q 005096 208 ---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV---WDFARCQE-E---RSLT-GHGWDVKSV 276 (715)
Q Consensus 208 ---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i---wdl~~~~~-~---~~l~-~~~~~I~si 276 (715)
+.+.+.+++.++... .....|..+.|++||..|+... ++.|++ -....+.. + ..+. .....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443333322 3356799999999999988766 467777 44344431 1 1122 233346889
Q ss_pred EEcCCCCEEEEEeCCCcEEEE--ECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEE
Q 005096 277 DWHPTKSLLVSGGKDSLVKLW--DAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iw--Dl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~i 338 (715)
+|..++.++ ++..++...+| ++.. .....+.. ....+.+|+=++ ..|++...++.+.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG-~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDG-SNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCC-ccccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 999988854 55555544445 4442 22222122 244566666654 34556666664444
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.69 E-value=0.024 Score=59.70 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=109.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVK 221 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~ 221 (715)
.+++|.|..+ ..++ ++..+ +.+...+.++.-..+. .-.+....+....++..++ ++..|.|..= .+.+ .-.
T Consensus 63 ~l~~I~f~~~-~g~i-vG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWI-VGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEE-EEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEE-EcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 4677888643 3344 44455 4444434333322221 2233444444444443333 3444554332 2222 223
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-C
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA-K 300 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl-~ 300 (715)
.........+..+..++|+++++++.....+.-||-....-...-......|.++.|.+++.+.+++ ..|.|++=|. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3334556788899889999988888776667788864322222333356789999999998765544 8888888772 2
Q ss_pred CCceeEE----eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEE
Q 005096 301 SGRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 301 s~~~~~~----~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sg 373 (715)
..+.... +......+..++|.+++...++|+ .|.| +...+.++.-...+ .-...++.|.|.. . +.-.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~l 292 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVL 292 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEE
Confidence 2221111 112233488999998887777665 5544 34445555433332 3456788888875 3 344444
Q ss_pred eCCCcEEEE
Q 005096 374 SLDGSIFHW 382 (715)
Q Consensus 374 s~DG~I~iw 382 (715)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 668887665
No 381
>PRK13684 Ycf48-like protein; Provisional
Probab=97.66 E-value=0.043 Score=59.13 Aligned_cols=271 Identities=8% Similarity=0.055 Sum_probs=130.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEE-e-CCCCceEEE-EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLW-N-GQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iw-d-~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
...+++|+|..+.+-+++|. +|.|..= | -++.+.... +......+.++.|..+ +.+++ +..+.|..- .+.++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG~t 120 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGGKN 120 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCCCC
Confidence 55789999986666566664 4543332 2 112222111 1012234677877643 34444 444543322 122222
Q ss_pred eeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 221 KANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 221 ~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
...+. ........+....++. +..++..|.|..=+ +.++.-..+ ......+.++.+.+++.+++++ ..|.+..
T Consensus 121 W~~~~~~~~~~~~~~~i~~~~~~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~ 197 (334)
T PRK13684 121 WTRIPLSEKLPGSPYLITALGPGT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYS 197 (334)
T ss_pred CeEccCCcCCCCCceEEEEECCCc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEE
Confidence 11111 0111222222222222 33334444443222 122222211 2234578899999987666555 4465543
Q ss_pred -EECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEE
Q 005096 297 -WDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 297 -wDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l 370 (715)
+|- .++.-.. .......++++.+.++++.++++ ..|.+++-+.+.++.-..... ....+.++.+.+ ++.++
T Consensus 198 s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~ 274 (334)
T PRK13684 198 TWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIW 274 (334)
T ss_pred EcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEE
Confidence 222 2222222 22345678999999998877765 467665433343433222221 224578888887 55554
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+ ++.+|.|.. ..+.++.-.... ..-....+.+.|..+++.++ .+..|.|..|+=
T Consensus 275 ~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 275 A-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred E-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 4 455676543 333333222221 11223577888876666544 566898888764
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.02 Score=57.97 Aligned_cols=235 Identities=11% Similarity=0.054 Sum_probs=138.6
Q ss_pred EEEEEEcCCC-CEEEEEeCCCc-EEEEeCCCCceeeeecCCCCC--eEEEEEecCCCEEEEEECC-----CcEEEEECCC
Q 005096 189 IRSMVWSHND-NWMVSGDDGGA-IKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFCSCSDD-----TTVKVWDFAR 259 (715)
Q Consensus 189 V~~l~~spdg-~~L~tgs~dg~-I~iwd~~~~~~~~~~~~h~~~--I~~l~~spd~~~Las~s~D-----g~V~iwdl~~ 259 (715)
...|+|+|.. .-++.+-.-|+ ..++|.+......++...++. .-.=.|++|+.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456777654 34455555554 467787776655444332221 1223689999999876554 7799999864
Q ss_pred -CeeEEEecccCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeEEec----cCCCceE
Q 005096 260 -CQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMVL 316 (715)
Q Consensus 260 -~~~~~~l~~~~~~I~si~~spdg~~L~sgs~------------------Dg~I~iwDl~s~~~~~~~~----~~~~~I~ 316 (715)
...+..+..|.-.-..+.|..||++|+++.. .-.+.+.|..+++.+.+.. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3456677778877889999999998887642 0124445555555443322 2345688
Q ss_pred EEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEeec-------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 317 CVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~~-------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.++...||..++.+-..| --.|=-.+.++.+.-+.. ....|-+|+.+.+++.+.+|.-..+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 888888887655443222 111112233444443332 23457788888744444445445556889999
Q ss_pred CCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.++..+...... .+..++- ...-+++.+.+|.|.+++..
T Consensus 310 ~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 310 ATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred CCCcEEeccccc---cccccee--ccCceEEecCCceEEecccc
Confidence 888654332211 2223333 33346677778999988553
No 383
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.069 Score=54.48 Aligned_cols=195 Identities=8% Similarity=0.013 Sum_probs=119.9
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--- 261 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~--- 261 (715)
-.+.+..+.++ +++.+.+..+.-++|.|+.+-+.-..+......=..-.|.-.|++..++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34566777776 5677788888889999998764433322211111223344468898888877778889986543
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
....+.........++++ |++-..+..|+-+.|.|+.+...-..+ ......+.++..+++..+++.. +--+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 333444444555678887 888888889999999999865432222 1122367888888666555554 3446677
Q ss_pred ECCCCeEEEEeecC-CCC---eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 340 DIRAMKELESFRGH-RKD---VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 340 Dl~t~~~~~~~~~h-~~~---V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|..+.+....+... ... ++.+.. .+++......+.-+-+.|+.+..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence 77766544443321 122 222333 45666666666677777776544
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.61 E-value=0.083 Score=57.27 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=106.0
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCC----ceeeeecC---CC----CCeEEEEEecCCCEEEEEEC------CCcEEEEECC
Q 005096 197 NDNWMVSGD-DGGAIKYWQNNMN----NVKANKSA---HK----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFA 258 (715)
Q Consensus 197 dg~~L~tgs-~dg~I~iwd~~~~----~~~~~~~~---h~----~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~ 258 (715)
+.++|++.+ .++.|+|+|+.+. ++.+.+.. +. ..-..+...++++.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 356777665 6789999998753 33333321 11 11223334468888877532 2458888888
Q ss_pred CCeeEEEecccC---CceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceeEEeccCC--C
Q 005096 259 RCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--------------------DSLVKLWDAKSGRELCSFHGHK--N 313 (715)
Q Consensus 259 ~~~~~~~l~~~~---~~I~si~~spdg~~L~sgs~--------------------Dg~I~iwDl~s~~~~~~~~~~~--~ 313 (715)
+.+.+....... ..-..+-|.+..+.+++... ..+|.+||+++.+.+.++.-.. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777776665432 23457788888888887642 3579999999999998887433 2
Q ss_pred ceEEEEEcC--CCCEEEEE-ECCCeEEEEEC-CCCeE----EEEeec-----C------------CCCeEEEEEccCCCC
Q 005096 314 MVLCVKWNQ--NGNWVLTA-SKDQIIKLYDI-RAMKE----LESFRG-----H------------RKDVTALAWHPFHEE 368 (715)
Q Consensus 314 ~I~sl~~sp--dg~~Lasg-s~dg~I~iwDl-~t~~~----~~~~~~-----h------------~~~V~~l~~sp~~~~ 368 (715)
....|.|.. +..+=+++ ....+|.+|-- +.++- +..+.. . ..-|+.|.+|-++..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 355677654 44443333 34445555433 33321 222211 1 244799999995555
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeecc------------------CCCEEEEEEcCCCCEEEEEE
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVH------------------DNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~spdg~~L~sgs 417 (715)
+.+++-.+|.|+.||+........+-... .+...-+..|-||+.|+..+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 66667789999999998765543332110 12236678888988877664
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.61 E-value=0.048 Score=55.64 Aligned_cols=185 Identities=6% Similarity=0.010 Sum_probs=120.2
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg--~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
....-.-.+.|..+|.++-+.+.-| .|+.+|+++++.......... --..|+.. +++++...-.++...+||.++.
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT
T ss_pred CCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc
Confidence 3344455677777787777777665 689999999988766554321 12234443 3455556678899999999988
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-----CCceEEEEEcCCCCEEEEEeCCCc
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----GWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-----~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
+.+..+... ..=+.|+ .|++.|+.......|+++|-++.+..+.+... -..++.+.|. +|.+.|=.-....
T Consensus 121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 877776443 4456666 47778888877889999999888777766532 2246677776 5666666667778
Q ss_pred EEEEECCCCceeEEecc---------------CCCceEEEEEcCCCCEEEEEE
Q 005096 294 VKLWDAKSGRELCSFHG---------------HKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~---------------~~~~I~sl~~spdg~~Lasgs 331 (715)
|...|..+|+.+..+.. ..+-.+.|+|.++.+.|++.+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88999999988776631 134588999998776666555
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.018 Score=58.24 Aligned_cols=232 Identities=11% Similarity=0.107 Sum_probs=140.1
Q ss_pred EEEEEEcCCC-CEEEEEeCCCe-EEEEeCCCCceEEEEeccCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 005096 147 INRVLWTPTG-RRLITGSQSGE-FTLWNGQSFNFEMILQAHDHA--IRSMVWSHNDNWMVSGDDG-----GAIKYWQNNM 217 (715)
Q Consensus 147 I~~l~~spdg-~~Latgs~dg~-I~Iwd~~~~~~~~~l~~h~~~--V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~ 217 (715)
-..|+|+|.. +-++.+-.-|+ ..++|........++...++. .-.=.||+||.+|+..-+| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457788754 34666666665 568898887766655443322 1234799999999876444 7899999875
Q ss_pred C-ceeeeecCCCCCeEEEEEecCCCEEEEEECC------------------CcEEEEECCCCeeEEEe--c--ccCCceE
Q 005096 218 N-NVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------------TTVKVWDFARCQEERSL--T--GHGWDVK 274 (715)
Q Consensus 218 ~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~D------------------g~V~iwdl~~~~~~~~l--~--~~~~~I~ 274 (715)
+ ..+..+..|.-.-..+.|..|++.|+.+... -++.+.|..++..+.+. . .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4 4455666777777889999999998876431 11333443344333222 1 2345688
Q ss_pred EEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEEec-------cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEEC
Q 005096 275 SVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDI 341 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~-----I~iwDl~s~~~~~~~~-------~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl 341 (715)
.++...||..++.+-..|- -.+=-.+.++.+.-+. ...+.|-+|+.+.+..+++..+ ..+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 8888888876554433221 1111122333333332 2345678888887666666555 5567889999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.++..+......+ +..++. ...-|++.+.+|.|+++.
T Consensus 310 ~tG~vv~~a~l~d--aaGva~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 310 ATGAVVSEAALPD--AAGVAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCCcEEecccccc--ccccee---ccCceEEecCCceEEecc
Confidence 9998876543222 222222 234455666788888774
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.55 E-value=0.055 Score=58.64 Aligned_cols=189 Identities=11% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCCEEEEEe-CCCeEEEEeCCC----CceEEEEec---cC----CCEEEEEEcCCCCEEEEE--eCC----CcEEEEeCC
Q 005096 155 TGRRLITGS-QSGEFTLWNGQS----FNFEMILQA---HD----HAIRSMVWSHNDNWMVSG--DDG----GAIKYWQNN 216 (715)
Q Consensus 155 dg~~Latgs-~dg~I~Iwd~~~----~~~~~~l~~---h~----~~V~~l~~spdg~~L~tg--s~d----g~I~iwd~~ 216 (715)
+.++|++.+ .++.|+|+|+.+ -++.++++. +. ..-..+--.++|+.++++ +.+ |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 567777776 678899999884 345555553 11 112233334688888764 222 568888888
Q ss_pred CCceeeeecCCC---CCeEEEEEecCCCEEEEEEC--------------------CCcEEEEECCCCeeEEEecccCC--
Q 005096 217 MNNVKANKSAHK---ESVRDLSFCRTDLKFCSCSD--------------------DTTVKVWDFARCQEERSLTGHGW-- 271 (715)
Q Consensus 217 ~~~~~~~~~~h~---~~I~~l~~spd~~~Las~s~--------------------Dg~V~iwdl~~~~~~~~l~~~~~-- 271 (715)
+.+++....... ..-.++-|.+..+.+++... ..+|.+||+.+.+.+.++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 877777665432 23456777787788887643 35799999999999988875432
Q ss_pred ceEEEEEcC--CCCEEEE-EeCCCcEEEE-ECCCCc----eeEEeccC-----------------CCceEEEEEcCCCCE
Q 005096 272 DVKSVDWHP--TKSLLVS-GGKDSLVKLW-DAKSGR----ELCSFHGH-----------------KNMVLCVKWNQNGNW 326 (715)
Q Consensus 272 ~I~si~~sp--dg~~L~s-gs~Dg~I~iw-Dl~s~~----~~~~~~~~-----------------~~~I~sl~~spdg~~ 326 (715)
....|.|.. +..+-++ +....+|.+| ..+.++ .+..+... ..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 344666644 4443333 3334445444 323332 22222110 244799999999999
Q ss_pred EEEEE-CCCeEEEEECCC
Q 005096 327 VLTAS-KDQIIKLYDIRA 343 (715)
Q Consensus 327 Lasgs-~dg~I~iwDl~t 343 (715)
|++++ .+|.|+.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 98776 789999999976
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00011 Score=71.75 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=80.7
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-Eec-ccCCceEEEE
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLT-GHGWDVKSVD 277 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~-~l~-~~~~~I~si~ 277 (715)
|...+.|+.|+-+++...+....-. .+... .....-+..+++|+.+|.|++|+.+-..... .+. ........|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3445667888777665433221111 11111 2223345679999999999999886221111 111 1122222333
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-CceEEEEEcCCCCEEEEE--ECCCeEEEEECCC
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRA 343 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-~~I~sl~~spdg~~Lasg--s~dg~I~iwDl~t 343 (715)
...++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+-.++.|+++ +.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34456688999999999999999888777666566 444444444445555555 5556666666543
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0026 Score=69.09 Aligned_cols=144 Identities=12% Similarity=0.140 Sum_probs=100.3
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE-------EEEEECCCcEEEEECCCCee--EEE
Q 005096 196 HNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFARCQE--ERS 265 (715)
Q Consensus 196 pdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~-------Las~s~Dg~V~iwdl~~~~~--~~~ 265 (715)
.+.++|+ ++.....|+-.|++.++++..++.+.+ |.-+.+.++.+. -+.|-.|..|.-||.+-... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3445554 455556788889999999999887776 777777776532 24566788899999853222 222
Q ss_pred ecc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 266 LTG----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 266 l~~----~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
... ......|++-..+| +|++|+.+|.|++||--..+....+-+....|..|..+.||++|++.| +..|.|.|+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 23445677766544 799999999999999733333444667788999999999999998776 556767665
Q ss_pred C
Q 005096 342 R 342 (715)
Q Consensus 342 ~ 342 (715)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.51 E-value=0.022 Score=67.44 Aligned_cols=195 Identities=9% Similarity=0.063 Sum_probs=120.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA--------IRSMVWSH----------------NDNWMVSGDDGGAIK 211 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~--------V~~l~~sp----------------dg~~L~tgs~dg~I~ 211 (715)
+..|++++.++.|+-.|.++++.+-.+...... ...+++.. +++.|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777788888888888888877766543211 12233321 345788888999999
Q ss_pred EEeCCCCceeeeecCCCCCeE-------------EEEEec--CCCEEEEEEC----------CCcEEEEECCCCeeEEEe
Q 005096 212 YWQNNMNNVKANKSAHKESVR-------------DLSFCR--TDLKFCSCSD----------DTTVKVWDFARCQEERSL 266 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~-------------~l~~sp--d~~~Las~s~----------Dg~V~iwdl~~~~~~~~l 266 (715)
-.|.++++.+..+.. +..|. .+.-.+ .+..+++++. +|.|+-+|.++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988766532 11110 001111 1345555542 688999999999988765
Q ss_pred ccc---------C--------Cce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeEEecc
Q 005096 267 TGH---------G--------WDV-KSVDWHPTKSLLVSGG------------------KDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 267 ~~~---------~--------~~I-~si~~spdg~~L~sgs------------------~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
... . ..+ ..++++++..+++... ..+.|.-.|+++|+.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 0 011 2345555555554432 124567778899988877754
Q ss_pred CCCce---------EEEEEcC-CCC---EEEEEECCCeEEEEECCCCeEEEEee
Q 005096 311 HKNMV---------LCVKWNQ-NGN---WVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 311 ~~~~I---------~sl~~sp-dg~---~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
....+ .-+.+.. +|+ .|+.++.+|.+.++|.++++.+...+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 22111 1122322 553 78899999999999999999887654
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.00012 Score=71.55 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=87.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEE
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALA 361 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~ 361 (715)
.|...+.|+.|+-++++.-+.-..-. -+.....-+ .-+..|++|+.+|.|.+|...-...... +......|.++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44556678888888876543221111 111111112 2346699999999999998763222222 222223333333
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEE--ECCCeEEEEecCCCCC
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSG--SNDHTTKFWCRNRPGD 432 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sg--s~Dg~I~iWdl~~~~~ 432 (715)
-.-.++.+.++++.||.|+.|++.-.+.+-.. ..|. ..+..+..+..+++|+++ |.|..++.|++....+
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 33335558899999999999999766554333 3355 566666666667777777 7788888888765444
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.003 Score=68.59 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=98.3
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE-------EEEEECCCeEEEEECCCCeE--EEEe
Q 005096 281 TKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-------VLTASKDQIIKLYDIRAMKE--LESF 350 (715)
Q Consensus 281 dg~~L~-sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~-------Lasgs~dg~I~iwDl~t~~~--~~~~ 350 (715)
+.++|+ .+.....|+-.|++.|+.+..++-+.. |+-+.+.++.+. -++|-.|..|.-||.|-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455556788889999999999986555 777888876532 34566788999999883222 2222
Q ss_pred ecC----CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 351 RGH----RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 351 ~~h----~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
..| .....|++-. ...+||+|+.+|.|++||- ........+.+....|..+..+.||++|+..+ +..+.+-+
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 222 2234444443 6789999999999999997 44444445556778999999999999877665 55666665
Q ss_pred cC
Q 005096 427 RN 428 (715)
Q Consensus 427 l~ 428 (715)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 53
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.0056 Score=70.54 Aligned_cols=226 Identities=12% Similarity=0.120 Sum_probs=119.2
Q ss_pred cCCCCEEEEEeCCC------eEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCc
Q 005096 153 TPTGRRLITGSQSG------EFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNN 219 (715)
Q Consensus 153 spdg~~Latgs~dg------~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~d------g~I~iwd~~~~~ 219 (715)
+..+.++++|+.++ .|..||..+........-. .....++++. ++.++++|+.| .++..||..++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33455677777763 5788888776443332222 2223344444 55777888888 346677777665
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCc-----EEEEECCCCee--EEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-----VKVWDFARCQE--ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-----V~iwdl~~~~~--~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
-...-.-.......-...-+|...|+|+.||. |-.||..+.+- +............+.+ ++.+.++|+.|+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 32211111111111111226778888888864 66777755432 2222212222223333 477788887554
Q ss_pred ------cEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeE--EEEeecCCCCe
Q 005096 293 ------LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKE--LESFRGHRKDV 357 (715)
Q Consensus 293 ------~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~--~~~~~~h~~~V 357 (715)
.+..||..+++-.. .+........ ++. -++.+.++|+.|+ +|..||.++.+- +.........+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 46788887654332 2221222222 222 2567777787666 377788876443 32233333333
Q ss_pred EEEEEccCCCCEEEEEeCCCc-----EEEEEcCC
Q 005096 358 TALAWHPFHEEYFVSGSLDGS-----IFHWLVGH 386 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~DG~-----I~iwd~~~ 386 (715)
..+.+ ++.+.++|+.||. |..||-.+
T Consensus 517 g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 517 GVVVL---GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cEEEE---CCEEEEEecccCccccceeEEcCCCC
Confidence 33333 6788888887763 44554433
No 394
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0031 Score=73.87 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=89.5
Q ss_pred CeEEEEEecCCCEEEEE--ECCCcEEEEECCCCeeEE-----Ee------cccCCceEEEEEcCCCC-EEEEEeCCCcEE
Q 005096 230 SVRDLSFCRTDLKFCSC--SDDTTVKVWDFARCQEER-----SL------TGHGWDVKSVDWHPTKS-LLVSGGKDSLVK 295 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~--s~Dg~V~iwdl~~~~~~~-----~l------~~~~~~I~si~~spdg~-~L~sgs~Dg~I~ 295 (715)
.|..+...+|....++. +.+-.|..||+++..... -+ ........++.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555555666554433 334478999986543322 11 11223456788887532 456677889898
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l~ 371 (715)
+..+........--......+|++|++.|+.+++|...|++.-|... ++....+.+ ....|.+|+|.. ...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~-t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS-TQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec-ceeEEE
Confidence 88776433222222355678999999999999999999999888754 444444332 146799999987 445544
Q ss_pred E
Q 005096 372 S 372 (715)
Q Consensus 372 s 372 (715)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.023 Score=58.07 Aligned_cols=163 Identities=10% Similarity=0.150 Sum_probs=116.0
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.+....|.++.|+++.+.|++......-.||=..+++.++++.-. -.....|++.-++.++++--.+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 455566999999999999999998888888877788888876432 2345678888788887777788888888766543
Q ss_pred eeEEe----------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEee-------cCCCCeEEEEEc
Q 005096 304 ELCSF----------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFR-------GHRKDVTALAWH 363 (715)
Q Consensus 304 ~~~~~----------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~-------~h~~~V~~l~~s 363 (715)
.+..+ ...+.....++|++....|+++-+..=+.||.+..... +.... ..-..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 11255678899999988888888887777776653321 11111 113457888999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+..+.+++-+.+++.|.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 877888888888888877777544
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.0097 Score=68.64 Aligned_cols=210 Identities=6% Similarity=0.029 Sum_probs=102.2
Q ss_pred cEEEEeCCCCceeeeecCCCCCe-EEEEEecCCCEEEEEECC------CcEEEEECCCCeeEE--EecccCCceEEEEEc
Q 005096 209 AIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEER--SLTGHGWDVKSVDWH 279 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~--~l~~~~~~I~si~~s 279 (715)
.+..||..+++....-....... .+++. -++..+++|+.+ ..+..||..+.+-.. .+.........+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 46778877664332211111111 12222 256666777653 347788876653221 11111112222233
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEECC-------------------
Q 005096 280 PTKSLLVSGGKDS-----LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD------------------- 333 (715)
Q Consensus 280 pdg~~L~sgs~Dg-----~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~d------------------- 333 (715)
++++.++|+.++ .+.+||.++.+-.. .+.........+++ ++++.++|+.+
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 477778887654 47889987653221 11111111222222 57777777654
Q ss_pred ----CeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCC------cEEEEEcCC-CCceE-EEeeccCC
Q 005096 334 ----QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG------SIFHWLVGH-ETPQV-EIHNVHDN 399 (715)
Q Consensus 334 ----g~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG------~I~iwd~~~-~~~~~-~~~~~h~~ 399 (715)
..|..||.++.+- +..+....... +++.. ++.+.+.|+.++ .|..||..+ +.... ........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2477788766433 22222111111 22222 677777777542 366788876 33221 11111111
Q ss_pred CEEEEEEcCCCCEEEEEECCC--eEEEEecC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDH--TTKFWCRN 428 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg--~I~iWdl~ 428 (715)
....+.+ ++++.++|+.|+ .+..||..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 2222223 678889999888 55556553
No 397
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.18 Score=51.51 Aligned_cols=270 Identities=9% Similarity=-0.029 Sum_probs=150.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---c
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---N 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~---~ 219 (715)
+.+..+.++ ++++..+..+.-++|.|+.+-.....+..-+ +--.++.. .|++..++..|.-+.+.|+.+. .
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566665 4567777777789999998765444433222 33344444 5899988886666777887654 3
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
+...+.........++++ |++.+.+..|+-+.|.|+.+...-..+. .....+.++..+++..+++.. +.-+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 344444444444666665 6778888899999999996644322221 233367888888654444433 3447788
Q ss_pred ECCCCceeEEecc-CCCceEEE-EEcCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 298 DAKSGRELCSFHG-HKNMVLCV-KWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 298 Dl~s~~~~~~~~~-~~~~I~sl-~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
|..+.+....+.. ....+.++ .+.-.+++......+.-+.+-|+.+-.. ...+......-..+.. .+.++..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a---y~~y~yi 315 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA---YGNYNYI 315 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE---ecCeeEe
Confidence 8877664444421 12223232 2223467777777777777777764321 1112211112233333 2344444
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+..+ ...+.+....+..-+.. +....+.+.+.+-+.+++.+...++-+.||+.
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~-g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRP-GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCC-ceEEEeCCChhhccccc-CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 4444 44444543322211111 11112334444445568888889999999975
No 398
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.43 E-value=0.18 Score=55.20 Aligned_cols=193 Identities=9% Similarity=0.033 Sum_probs=110.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCC-CCeEEE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDL 234 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l 234 (715)
.++++..+|.|.-.|.++++.+.....-. ..+.+-.+..+|+ |++++.++.+..+|..+++.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 46666888888888888877654332221 2222323333555 7778888888888988888877766555 112222
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC---CceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEec
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~---~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+..+ ..++.++.++.+...|.++++.+-...... ..+..--.. ....++.+.. ++.+.-+|.+++..+...+
T Consensus 149 ~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 22223 334444477888888888887765543321 111111112 2334555555 5667777888887766532
Q ss_pred c----CCCceEEE-EEcC----CCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 310 G----HKNMVLCV-KWNQ----NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 310 ~----~~~~I~sl-~~sp----dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
. ....+... .+.. .+.-++.++.++.+...|..+++.+.++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 1 11111001 1100 1122466777888999999999999888764
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.38 E-value=0.038 Score=65.47 Aligned_cols=196 Identities=12% Similarity=0.117 Sum_probs=117.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecCCCC--------CeEEEEEec----------------CCCEEEEEECCCcEE
Q 005096 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--------SVRDLSFCR----------------TDLKFCSCSDDTTVK 253 (715)
Q Consensus 198 g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~--------~I~~l~~sp----------------d~~~Las~s~Dg~V~ 253 (715)
+..|++++.++.|.-.|..+++.+..+..... .++.+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777788888888888877766543221 122333321 234788899999999
Q ss_pred EEECCCCeeEEEecccCCceE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceeEEe
Q 005096 254 VWDFARCQEERSLTGHGWDVK-------------SVDWHP--TKSLLVSGGK----------DSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~~~~I~-------------si~~sp--dg~~L~sgs~----------Dg~I~iwDl~s~~~~~~~ 308 (715)
-.|.++++.+..+... +.|. .+.-.| .+..+++++. +|.|+-+|+++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988766421 1110 011111 1345666642 588999999999998876
Q ss_pred ccC---------CCc--------e-EEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEeec
Q 005096 309 HGH---------KNM--------V-LCVKWNQNGNWVLTAS------------------KDQIIKLYDIRAMKELESFRG 352 (715)
Q Consensus 309 ~~~---------~~~--------I-~sl~~spdg~~Lasgs------------------~dg~I~iwDl~t~~~~~~~~~ 352 (715)
... .+. + ...+++++..+++.+. ..+.|.-.|.++++.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 000 1 2234555444444422 124566778888888877764
Q ss_pred CCCCeEE---------EEEccCCC---CEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 353 HRKDVTA---------LAWHPFHE---EYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 353 h~~~V~~---------l~~sp~~~---~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
....+.+ +.+...++ ..++.++.+|.++++|-++++.+..+.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2222111 11211133 278888889999999988887665543
No 400
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00075 Score=74.57 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=79.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK-SVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~-si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
....|.-+.|+|.-..||.+..+|.|.+..++ ...+.++..++..++ +++|.+||++|++|-.||+|+|.|+.++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34567889999999999999999999999988 778888886777777 9999999999999999999999999998877
Q ss_pred EEe-ccCCCceEEEEEc
Q 005096 306 CSF-HGHKNMVLCVKWN 321 (715)
Q Consensus 306 ~~~-~~~~~~I~sl~~s 321 (715)
..+ ......|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 663 2245568888886
No 401
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.37 E-value=0.18 Score=52.06 Aligned_cols=215 Identities=13% Similarity=0.203 Sum_probs=122.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCC-------CCceEEEEec-----cCCCEEEEEEcCCCC------------EEE
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQ-------SFNFEMILQA-----HDHAIRSMVWSHNDN------------WMV 202 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~-------~~~~~~~l~~-----h~~~V~~l~~spdg~------------~L~ 202 (715)
-..|+++|.+.+-++....+...+||.. ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3578999999877787888999999986 1223333331 124567777764322 367
Q ss_pred EEeCCCcEEEEeCCCCce-----eeeec-C-CCCCeEEEEEecC--CCEEEEE-ECCCcEEEEECCCCeeEEE---eccc
Q 005096 203 SGDDGGAIKYWQNNMNNV-----KANKS-A-HKESVRDLSFCRT--DLKFCSC-SDDTTVKVWDFARCQEERS---LTGH 269 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~-----~~~~~-~-h~~~I~~l~~spd--~~~Las~-s~Dg~V~iwdl~~~~~~~~---l~~~ 269 (715)
.+++||+|.-|.-..... ...+. . ....-+.+++... +.+|+.+ -.+++|.|||-.= ..+.. +...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCccCC
Confidence 788999999998432211 11121 1 1223345666533 4555544 3578899988532 21111 1100
Q ss_pred -----C--CceEEE---------EEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC------CCC
Q 005096 270 -----G--WDVKSV---------DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGN 325 (715)
Q Consensus 270 -----~--~~I~si---------~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp------dg~ 325 (715)
- ..|..| .-.++.+.=+.+..-|.|.+||+. ++.++++. +.-+.-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 001111 011111111223334789999987 77777774 2223445666644 456
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeecCCC------CeEEEEEc
Q 005096 326 WVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAWH 363 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------~V~~l~~s 363 (715)
+|+--..||+|..||..+++.+..++...+ .++.|+|.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fG 306 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFG 306 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeC
Confidence 666666899999999999998887775443 34556654
No 402
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.33 E-value=0.015 Score=51.05 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=70.3
Q ss_pred eEEEEEec---CC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 005096 231 VRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (715)
Q Consensus 231 I~~l~~sp---d~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~ 306 (715)
|++++++. |+ +.|++|+.|..|++|+-+ +.+..+. ....|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 56666654 32 679999999999999854 4555555 4557788877654 679999999999999853 3445
Q ss_pred EeccCCCceEEEEEcC-C--C-CEEEEEECCCeEEE
Q 005096 307 SFHGHKNMVLCVKWNQ-N--G-NWVLTASKDQIIKL 338 (715)
Q Consensus 307 ~~~~~~~~I~sl~~sp-d--g-~~Lasgs~dg~I~i 338 (715)
.++. +..++++.+.. + | .-|++|-.+|.|-+
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5553 34466766544 2 2 36888888988754
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.24 E-value=0.16 Score=55.82 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=60.1
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCce----EEEEEcCC--------------CC-EEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV----LCVKWNQN--------------GN-WVLT 329 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I----~sl~~spd--------------g~-~Las 329 (715)
....+.+|+.+|++++.++...=|.|.++|+.++..++.+++..+.- ....-... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34568899999999988888888999999999999888888655421 11111100 11 2334
Q ss_pred EECCCeEEEEECCCCeEEEEeec
Q 005096 330 ASKDQIIKLYDIRAMKELESFRG 352 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~~~~~~ 352 (715)
+-.-|.|.||+++++..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 56789999999999888877664
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.23 E-value=0.016 Score=66.90 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=114.2
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeeeecC-CCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeE
Q 005096 197 NDNWMVSGDDG------GAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEE 263 (715)
Q Consensus 197 dg~~L~tgs~d------g~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~ 263 (715)
.+.++++|+.+ ..|..||..++.......- ....-.++++. ++...++|+.| .++..||..+.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34566677666 3577788777643322211 22223334443 55777888888 35777887655422
Q ss_pred E--EecccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCC
Q 005096 264 R--SLTGHGWDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 264 ~--~l~~~~~~I~si~~spdg~~L~sgs~Dg~-----I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
. .+...........+ +|.+.++|+.||. |..||.++.+-... ..........+. -++++.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCC
Confidence 2 22222222222222 4788889998864 77888776542221 211111122222 2677777777554
Q ss_pred ------eEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-----EEEEEcCCCCceEEEeec-cCCC
Q 005096 335 ------IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-----IFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 335 ------~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-----I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
+|..||..+.+- +..+..-..... ++.. ++.+++.|+.|+. |..||..+.......... ....
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 577888776543 333322222222 2222 7888888888763 667777666543332111 2222
Q ss_pred EEEEEEcCCCCEEEEEECCCe
Q 005096 401 VWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~Dg~ 421 (715)
+..+.+ ++.+.++|+.||.
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ccEEEE--CCEEEEEecccCc
Confidence 222333 4677788887764
No 405
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.014 Score=51.27 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 315 VLCVKWNQ---NG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 315 I~sl~~sp---dg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
|+++++.. || +.|++|+.|..|+||+-. +.+.++. ....|++++-. ....|+.+..+|+|-+|+-.. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSL--GGGRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEc--CCCEEEEEecCCEEEEEeCcc--ee
Confidence 56666654 33 689999999999999843 5556655 45567777766 457899999999999997633 33
Q ss_pred EEEeeccCCCEEEEEEcCC---C-CEEEEEECCCeEEE
Q 005096 391 VEIHNVHDNTVWDLAWHPI---G-YLLCSGSNDHTTKF 424 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~spd---g-~~L~sgs~Dg~I~i 424 (715)
+++.. +..++++.+..- | .-|++|-.+|.|-+
T Consensus 75 WRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 34433 335777765432 2 46888888888753
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.19 E-value=0.54 Score=51.81 Aligned_cols=268 Identities=11% Similarity=0.098 Sum_probs=142.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce----EEEEeccCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC--c----
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSH-----NDNWMVSGDDGGAIKYWQNNMN--N---- 219 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~sp-----dg~~L~tgs~dg~I~iwd~~~~--~---- 219 (715)
+...|++|+.+|.++||+-...+. +..-..-+..|..|+.-. +...||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999998654321 111122346777776532 2234444 44567778876221 1
Q ss_pred ---eeeeecCCC--CCeEEEEEec----C-CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 220 ---VKANKSAHK--ESVRDLSFCR----T-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 220 ---~~~~~~~h~--~~I~~l~~sp----d-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
.+.....|. .....+++-+ . ..+|++-+.||.+.+|+-+.....+.+.. ----..+++.+..+.|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 111112222 2222333322 1 36788899999999999776554454443 22334678888888899999
Q ss_pred CCCcEEEEECCC--------------------Ccee---EEeccCCC---ceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 290 KDSLVKLWDAKS--------------------GREL---CSFHGHKN---MVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 290 ~Dg~I~iwDl~s--------------------~~~~---~~~~~~~~---~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.+..|..|.... ++.+ .++. -.. .|..+.++.....|++-+ ...+.+.+. +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~ 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-N 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-C
Confidence 888888886421 0100 1111 111 233344443334444444 445655554 3
Q ss_pred CeEEEEeecCCCCeEEEE-E------ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE--EEEEEcCCCCEEE
Q 005096 344 MKELESFRGHRKDVTALA-W------HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV--WDLAWHPIGYLLC 414 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~-~------sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~spdg~~L~ 414 (715)
|......+- +....+++ + .+.....+++++.++.+.||.-.+-. +.... ...+| .-..|..-...|+
T Consensus 271 G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~--WsA~l-~~~PVal~v~~~~~~~G~IV 346 (418)
T PF14727_consen 271 GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV--WSAQL-PHVPVALSVANFNGLKGLIV 346 (418)
T ss_pred CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE--EecCC-CCCCEEEEecccCCCCceEE
Confidence 544333332 22222221 1 11112358888889999988643211 11111 11122 2222333356889
Q ss_pred EEECCCeEEEEecCCCC
Q 005096 415 SGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 415 sgs~Dg~I~iWdl~~~~ 431 (715)
+-+.||.+.+-=+.++-
T Consensus 347 ~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 347 SLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEcCCCcEEEEEeCCCC
Confidence 99999999987665544
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.15 E-value=0.075 Score=52.48 Aligned_cols=206 Identities=11% Similarity=0.094 Sum_probs=114.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECC--CCeeEEEec-----c
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD---LKFCSCSDDTTVKVWDFA--RCQEERSLT-----G 268 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~---~~Las~s~Dg~V~iwdl~--~~~~~~~l~-----~ 268 (715)
.+|.+--..+.|.-||++.+........ ...+.++.+--.+ .+.+.++..-.|.-||.. .....+++. .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 4455555567777788887655443221 1223333332222 334444444445557732 222222211 1
Q ss_pred cCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE-ECCCeEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKL 338 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~D---------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg-s~dg~I~i 338 (715)
.+...++-..+|+|++++-.-.| |.++.|-.. ..+..+...-..-+.++|+.+.+.++.. +.+-.|.-
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 24456677789999985432222 344555432 1222222233334678899887766654 45667777
Q ss_pred EE--CCCCe-----EEEEeecC---C-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 339 YD--IRAMK-----ELESFRGH---R-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 339 wD--l~t~~-----~~~~~~~h---~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
|| ..++. .+..++.. + -.--.+++.. .+++++++-+.++|..+|..+++.+.++... ...|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence 87 44443 33333321 1 1123344444 7888888888899999999999988877654 6789999996
Q ss_pred CC
Q 005096 408 PI 409 (715)
Q Consensus 408 pd 409 (715)
-.
T Consensus 263 Gk 264 (310)
T KOG4499|consen 263 GK 264 (310)
T ss_pred CC
Confidence 44
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.004 Score=72.83 Aligned_cols=101 Identities=11% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 233 (715)
.+..++.|++.|.|.+.|.... +....-..-.+.|++++|+.||++++.|-.+|.|.+||+..++....+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999988886542 111112223578999999999999999999999999999999888887776665554
Q ss_pred E---EEecCCCEEEEEECCCcEEEEEC
Q 005096 234 L---SFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 234 l---~~spd~~~Las~s~Dg~V~iwdl 257 (715)
+ .+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 44456667777777776 4543
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0041 Score=72.70 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=75.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce-eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE-
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK- 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~- 274 (715)
.+..++.|+..|.|...|+..+-. ...-......|++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+....+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788888889998888765411 112233467899999999999999999999999999999988888877665544
Q ss_pred --EEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 275 --SVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 275 --si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4455556667888777775 4543
No 410
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0019 Score=71.49 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
...|.-+.|+|.-.+||++..+|.|.+..+. +..+.++..+...++ +++|.+ ++++|++|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4457889999999999999999999999988 899999998888887 999999 7999999999999999999998877
Q ss_pred EEEeeccCCCEEEEEEc
Q 005096 391 VEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~s 407 (715)
......-...|.++-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 66444446678888886
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.14 E-value=0.19 Score=54.88 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=78.7
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeeeecCCCCCeEEEEEecCCCEEEEEECCC
Q 005096 187 HAIRSMVWSHNDNWMVSGD-----------DGG-AIKYWQNNM--NN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
.....|+|.++|+++++.. ..+ .|.+++-.. +. ....+.........|++.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456788888888776642 223 676665432 22 222333334456889998888 44444444
Q ss_pred cEEEEECCCC-----eeEEE---ecc----cCCceEEEEEcCCCCEEEEEeCC-------------------CcEEEEEC
Q 005096 251 TVKVWDFARC-----QEERS---LTG----HGWDVKSVDWHPTKSLLVSGGKD-------------------SLVKLWDA 299 (715)
Q Consensus 251 ~V~iwdl~~~-----~~~~~---l~~----~~~~I~si~~spdg~~L~sgs~D-------------------g~I~iwDl 299 (715)
.+++.|.+.. +.... +.. +......++|.+||++.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454221 21112 221 12347789999999876654421 34555565
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEE
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
++++. ..+...-.....++|+++|+++++-.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 54443 23322234457899999998876644
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.11 E-value=0.083 Score=54.50 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCcee
Q 005096 146 SINRVLWTPTGRRLITGS---QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVK 221 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs---~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd-~~~~~~~ 221 (715)
.+.+.++++|++.++... ....|+++.... ....+. ....+..-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 334455555432 222221 234788889999977777766666667774 2333221
Q ss_pred -eeecC--CCCCeEEEEEecCCCEEEEEE---CCCcEEEEECC---CC------eeEEEecccCCceEEEEEcCCCCEEE
Q 005096 222 -ANKSA--HKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFA---RC------QEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 222 -~~~~~--h~~~I~~l~~spd~~~Las~s---~Dg~V~iwdl~---~~------~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
..... ....|..+.+++||..++... .++.|.|--+. .+ ............+++++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 11111 122899999999999987766 35677776552 22 01112223356789999999988777
Q ss_pred EEeCCC
Q 005096 287 SGGKDS 292 (715)
Q Consensus 287 sgs~Dg 292 (715)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665544
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.06 E-value=0.17 Score=52.25 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=89.4
Q ss_pred CeEEEEEecCCCEEEEEE---CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee
Q 005096 230 SVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD-AKSGREL 305 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s---~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD-l~s~~~~ 305 (715)
.+.+.+++++++.++... ....|+++.... ....+. ....+..-.|++++...++...+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887766 334555555433 223222 334788899999987777766666666663 3333222
Q ss_pred -EEecc--CCCceEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC--eE----EEEeecCCCCeEEEEEccCCCCEE
Q 005096 306 -CSFHG--HKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIR---AM--KE----LESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 306 -~~~~~--~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~---t~--~~----~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
..+.. ....|+++.+|+||..++... .++.|.|--+. .+ .. +.........++.++|.. +..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 22221 122899999999999888766 34677766543 22 11 122223456899999998 56666
Q ss_pred EEEeCCC
Q 005096 371 VSGSLDG 377 (715)
Q Consensus 371 ~sgs~DG 377 (715)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 5554443
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=97.06 E-value=0.2 Score=53.95 Aligned_cols=151 Identities=10% Similarity=0.070 Sum_probs=85.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEE-EECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~i-wdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~ 306 (715)
...+.++.+.+++.++++ +..|.+.. +|-....-..........++++.+.++++.++++ ..|.+++=+.+.++.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 457888999888765544 44555443 2322111222223345678999999988876665 55766543344443322
Q ss_pred Eecc----CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 307 SFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 307 ~~~~----~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
.... ....+.++.+.+++..++++ .+|.|. .....++.-.... .-....+.+.+.. +++. +..+..|.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~i 325 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVL 325 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceE
Confidence 2211 22357888998887755554 567554 3444444333332 2234577777774 4444 445668888
Q ss_pred EEEEc
Q 005096 380 FHWLV 384 (715)
Q Consensus 380 ~iwd~ 384 (715)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87764
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.04 E-value=0.24 Score=53.34 Aligned_cols=232 Identities=15% Similarity=0.156 Sum_probs=118.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---eeee----cCCCCCeEEEEEecC---CCEEEEEECC--------
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANK----SAHKESVRDLSFCRT---DLKFCSCSDD-------- 249 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~---~~~~----~~h~~~I~~l~~spd---~~~Las~s~D-------- 249 (715)
.-+.|+|.+|+++|++ ...|.|++++ ..+.. +..+ .........|+++++ +.+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 33332 1111 234456789999984 3444443331
Q ss_pred -CcEEEEECCCC-------eeE-EEecc---cCCceEEEEEcCCCCEEEEEeCCC-------------cEEEEECCCCc-
Q 005096 250 -TTVKVWDFARC-------QEE-RSLTG---HGWDVKSVDWHPTKSLLVSGGKDS-------------LVKLWDAKSGR- 303 (715)
Q Consensus 250 -g~V~iwdl~~~-------~~~-~~l~~---~~~~I~si~~spdg~~L~sgs~Dg-------------~I~iwDl~s~~- 303 (715)
..|.-|.+... +.+ ..+.. .......|+|.+|+.++++.++.+ .|.-.|.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444544332 111 11111 234456799999998766665433 23333322 11
Q ss_pred ------------eeEEeccCCCceEEEEEcCC-CCEEEEE-ECCCeEEEEECCCCe------------------------
Q 005096 304 ------------ELCSFHGHKNMVLCVKWNQN-GNWVLTA-SKDQIIKLYDIRAMK------------------------ 345 (715)
Q Consensus 304 ------------~~~~~~~~~~~I~sl~~spd-g~~Lasg-s~dg~I~iwDl~t~~------------------------ 345 (715)
....+..--.....++|++. ++++++= +.|..=.|.-++.+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00111111123467899998 6544432 222222222222211
Q ss_pred -----EEEEeecCCCCeEEEEEccC------CCCEEEEEeCCCcEEEEEcCCCCceEE---EeeccCCCEEEEEEcCCCC
Q 005096 346 -----ELESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQVE---IHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 346 -----~~~~~~~h~~~V~~l~~sp~------~~~~l~sgs~DG~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~ 411 (715)
.+..+. +...+..+.|... .+.+|++.-..+.|...+++....... +.......+.++++.+||.
T Consensus 240 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 112222 3355667777642 234666665567788888765543322 2333444799999999999
Q ss_pred EEEEEECCCeEE
Q 005096 412 LLCSGSNDHTTK 423 (715)
Q Consensus 412 ~L~sgs~Dg~I~ 423 (715)
++++.+.+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 988888888774
No 416
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.98 E-value=0.81 Score=50.00 Aligned_cols=194 Identities=13% Similarity=-0.005 Sum_probs=110.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCC--CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-CceEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHK--ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKS 275 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-~~I~s 275 (715)
..++++..+|.|.-.|.+++..+....... ..+.+-.+..+|+ |++++.++.++.+|.++++.+....... ..+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 445556788888888888887654333221 2333333333555 8888889999999998888887776555 11222
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC---CceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEe
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 350 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~ 350 (715)
-.+..++ .++.++.++.+...|.++++.+..+.... ..+..-... ....++.+.. ++.+.-+|.+++..+...
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 2222233 34444478999999999888877654322 111111111 2334555555 667788888888877664
Q ss_pred ecC----CCCeEEE-EEcc---CCCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 005096 351 RGH----RKDVTAL-AWHP---FHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 351 ~~h----~~~V~~l-~~sp---~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~ 395 (715)
+.+ ...+... .+.. .-+.-++.++.++.+...|..++..+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 311 1111000 0000 0112235566677787788877776666554
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0069 Score=71.14 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred CCEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCceee-----eec------CCCCCeEEEEEecCC-CEEEEEECCCcE
Q 005096 187 HAIRSMVWSHNDNWMVS--GDDGGAIKYWQNNMNNVKA-----NKS------AHKESVRDLSFCRTD-LKFCSCSDDTTV 252 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~t--gs~dg~I~iwd~~~~~~~~-----~~~------~h~~~I~~l~~spd~-~~Las~s~Dg~V 252 (715)
-.|..+...+|....++ .+++-.|..||+++-.... -+. ....-..++.|.+.- ...+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555555667655543 3344578889987543221 111 122345567777643 235667788889
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~La 328 (715)
++..+........-......+++++|++.|+.+++|...|++.-|... .+....+.+ ....|.||+|.....+|+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 888775433222222345678999999999999999999999988754 333333321 246799999998777766
Q ss_pred E
Q 005096 329 T 329 (715)
Q Consensus 329 s 329 (715)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 5
No 418
>PHA03098 kelch-like protein; Provisional
Probab=96.96 E-value=0.02 Score=65.86 Aligned_cols=184 Identities=10% Similarity=0.127 Sum_probs=87.6
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCcee
Q 005096 155 TGRRLITGSQSG------EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVK 221 (715)
Q Consensus 155 dg~~Latgs~dg------~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~~~~ 221 (715)
++..+++|+.++ .+..||..+.+....-... ......+. -++++++.|+.+ ..+..||..++.-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666776542 5778887776543321111 11122222 256777778765 34677887765432
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeCC--
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD-- 291 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~D-- 291 (715)
..-..........+..-+++.++.|+.+ ..+.+||..+.+-... +....... +++.. +++++++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH-DGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE-CCEEEEECCccCC
Confidence 2111111111111122356666666632 4588899876433221 11111111 22222 46666666643
Q ss_pred ------CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005096 292 ------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (715)
Q Consensus 292 ------g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~ 344 (715)
..+.+||.++.+-... +.........+.+ ++++++.|+.+ ..|.+||.++.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388889876543221 1111111122222 56666666643 35677776654
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.91 E-value=0.51 Score=52.78 Aligned_cols=148 Identities=11% Similarity=0.199 Sum_probs=88.1
Q ss_pred CccEEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCC
Q 005096 144 RCSINRVLWTPTGRRLI-TGS--QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND----NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~La-tgs--~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg----~~L~tgs~dg~I~iwd~~ 216 (715)
-.+|..++|. ||+.++ |.- .+|.+++=|. +.+ +.-+.|..+.|.+-+ -.|++.-....|.||.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578889998 555444 432 2343333221 122 333568899998853 244445567899999865
Q ss_pred C-----CceeeeecCC-CC----CeEEEEEecCCCEEEEEECCCcEEEEECC--CCeeEEEecccCCceEEEEEcCCCCE
Q 005096 217 M-----NNVKANKSAH-KE----SVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 217 ~-----~~~~~~~~~h-~~----~I~~l~~spd~~~Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
. ++.......+ .+ --..+.|+|....|++-.....-.++++. +......+ ...+.|.|.+|..||++
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 2 2222221111 11 12457899998888877766555556653 33333344 46678999999999998
Q ss_pred EEEEeC-CCcEEEEECC
Q 005096 285 LVSGGK-DSLVKLWDAK 300 (715)
Q Consensus 285 L~sgs~-Dg~I~iwDl~ 300 (715)
|+++-. .=.-+|||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 776643 3356889854
No 420
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.87 E-value=0.0032 Score=42.31 Aligned_cols=38 Identities=26% Similarity=0.598 Sum_probs=33.7
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
+.+..+..|...|.++.|.++++++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999996
No 421
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.85 E-value=1.1 Score=53.16 Aligned_cols=68 Identities=6% Similarity=0.143 Sum_probs=43.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEE---eccCCCEEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHND------NWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l---~~h~~~V~~l~~spdg------~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+.|+.+.++|.+.-+..........+ ..-+..|.|+++.++. ++++.++.|+.++++.+.....+..+
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l 626 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL 626 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence 34566666666655554322222222 2234678889887754 57899999999999988765554443
No 422
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=96.83 E-value=0.88 Score=48.23 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=110.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCce-----------
Q 005096 155 TGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNV----------- 220 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~----------- 220 (715)
++++|+.|+++| |++.|+.+ .+..+.+ +...|+++......+.|++- +....|+++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 66666654 3344433 35689999998887776554 4444599998733221
Q ss_pred ----eeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCC----eeEEEe---c-ccCCceEEEEEcCC--CCEE
Q 005096 221 ----KANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARC----QEERSL---T-GHGWDVKSVDWHPT--KSLL 285 (715)
Q Consensus 221 ----~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~----~~~~~l---~-~~~~~I~si~~spd--g~~L 285 (715)
......+......+++..... .++++....+|.++...+. ...+.+ . -....+..+..+.+ ...|
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122333334444443222 2344445566776644221 111110 0 01122223322322 4567
Q ss_pred EEEeCCCcEEEEECCC--Ccee----E-EeccCC-CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCC
Q 005096 286 VSGGKDSLVKLWDAKS--GREL----C-SFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKD 356 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s--~~~~----~-~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~-~~~~~h~~~ 356 (715)
++|+..+...++++.. .... . ...... ..+..+.+ .++.+|+ +. |....+.|....+.. ...-.....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Ll-c~-~~~~v~Vn~~G~~~~r~~~l~w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLL-CY-DEFGVFVNLYGKRRSRNPILHWEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEE-EE-CcEEEEEeCCCCccccceEEEcCCc
Confidence 7777653355555532 1100 0 011111 23333333 3444444 33 344555565531221 111224556
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..++++. ..+|++-. +..|.|+++.++.....
T Consensus 246 p~~~~~~---~pyll~~~-~~~ievr~l~~~~l~q~ 277 (302)
T smart00036 246 PESFAYH---SPYLLAFH-DNGIEIRSIKTGELLQE 277 (302)
T ss_pred ccEEEEE---CCEEEEEc-CCcEEEEECCCCceEEE
Confidence 6777775 35555554 44699999988754333
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.81 E-value=1.1 Score=49.18 Aligned_cols=145 Identities=8% Similarity=0.108 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----- 345 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~----- 345 (715)
...+..++|+.+++++.....++-||- +.. ...-......++++.|..++.+++++ .+|.|.+ ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 344566777777666654333333443 221 11122235568999999998877666 5666543 333343
Q ss_pred EEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 346 ELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 346 ~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
.+..... ....+.++.+.. ++. ++.++.+|.|.+..- .++.-.... ..-...++.+.|..+++.++ .+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcE
Confidence 2222222 223588888885 444 455566787766542 222211211 12234678999887665554 456888
Q ss_pred EEEE
Q 005096 422 TKFW 425 (715)
Q Consensus 422 I~iW 425 (715)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
No 424
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.77 E-value=0.0036 Score=42.06 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=33.1
Q ss_pred ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+.+..+..+...|.++.|+++++++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999996
No 425
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.75 E-value=0.093 Score=58.06 Aligned_cols=271 Identities=11% Similarity=0.026 Sum_probs=140.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
-..+|.++.+.-+| .|.+|+.|| +..||..+++....-.... ..|..+..+-.+ .|.+|+.+| |++.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 34578888888888 578888888 7888888877666544433 566666655455 456676665 566655542222
Q ss_pred eee-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE-ecc--cCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 222 ANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 222 ~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~--~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
... ......|..+.-..++ .+-.|+.+|..+ ..+.+...... .+. .-..|.++..+.+|+ |.+++.++.+++-
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 111 1123344444433333 355566655433 23332222111 111 123566777776776 6667777766654
Q ss_pred ECCCCceeEEeccCCCc---eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccCCCCEEEEE
Q 005096 298 DAKSGRELCSFHGHKNM---VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~---I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~~~~~l~sg 373 (715)
+.. .+....+...++. ...++..-.+..+-.....|.+.+-+-.++..+..... ....|+.+++.. ++.+ ..+
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~l-Wlg 392 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRL-WLG 392 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcE-EEE
Confidence 432 2222222211111 11111111222233333344455555556665554332 234566666665 4444 344
Q ss_pred eCCCcEEEEEcCC-CCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 374 SLDGSIFHWLVGH-ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 374 s~DG~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
+...-+..|+.++ .....+......+.|..+.=.++++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 4443444566655 2222222223456788888888887 888888887654
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.73 E-value=0.54 Score=51.36 Aligned_cols=142 Identities=5% Similarity=0.033 Sum_probs=80.7
Q ss_pred ccEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cce--EEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 145 CSINRVLWTPTGRRLITGS-----------QSG-EFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-----------~dg-~I~Iwd~~~--~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-...+.|++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4467899999998776643 223 677776432 332 23343334456789998887 44444444
Q ss_pred cEEEEeCCCC-----ce--e-eeecC----CCCCeEEEEEecCCCEEEEEECC-------------------CcEEEEEC
Q 005096 209 AIKYWQNNMN-----NV--K-ANKSA----HKESVRDLSFCRTDLKFCSCSDD-------------------TTVKVWDF 257 (715)
Q Consensus 209 ~I~iwd~~~~-----~~--~-~~~~~----h~~~I~~l~~spd~~~Las~s~D-------------------g~V~iwdl 257 (715)
.+++.|.+.. +. + ..+.. +......++|.+|+.+.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334444321 11 1 11211 13447789999998876654421 34555665
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
...+.. .+.........++|+++++++++-.
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 554433 3332234456899999998876644
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.73 E-value=0.8 Score=50.37 Aligned_cols=146 Identities=8% Similarity=0.054 Sum_probs=80.2
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----ee
Q 005096 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----EL 305 (715)
Q Consensus 231 I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-----~~ 305 (715)
...+..++|+.+++.+.....++-||-....-...-......+.++.|..++.+++++ .+|.|. |....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3445556676666655544434445432211011122334568899999888877655 556553 3333343 22
Q ss_pred EEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 306 CSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 306 ~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
..... ....+.++.|..++..+++| .+|.|.+.. ..++.-.... .-...++.+.|.. +++. .+.+.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g-~~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKG-FVLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCce-EEEeCCcEEE
Confidence 22221 22358899999887765555 577665543 4444433322 3345688899875 3444 4445678876
Q ss_pred EE
Q 005096 381 HW 382 (715)
Q Consensus 381 iw 382 (715)
.|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 65
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.73 E-value=0.36 Score=56.96 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=55.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
..|..|.++++|++|+..+..|. .|..+-.. .....+.+....|.|-.+.-+..++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 46888999999999988877554 44433221 1111222223333332222111111
Q ss_pred ecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 005096 266 LTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 266 l~~~~~~I~si~~spd---g~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.......|..+.|+|. +..|++-+.|++||+||+....
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123456888999986 4688888899999999997543
No 429
>PRK05560 DNA gyrase subunit A; Validated
Probab=96.70 E-value=1.4 Score=52.96 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=124.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce-------E--EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---CCC
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNF-------E--MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN---NMN 218 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~-------~--~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~---~~~ 218 (715)
.+-++...+++-+.+|.|+.-++.+... . ..++. ...+..+......+.|+..+..|.+..... ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455777899999999999886554321 1 11122 233444444445555666666777766543 221
Q ss_pred ------cee---eeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCe-------eEEEecccCCceEEEEEcC
Q 005096 219 ------NVK---ANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ-------EERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 219 ------~~~---~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~-------~~~~l~~~~~~I~si~~sp 280 (715)
..+ ..+.....-|.++.+.. +..+++..+.+|.|+..++.... ....+.. .+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~ 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTD 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeC
Confidence 111 11222223344444442 56789999999999988764322 2223332 34444444444
Q ss_pred CCCEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-------
Q 005096 281 TKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------- 344 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~------- 344 (715)
....|+..+..|.+..+.+.. |..+..+.....-+..+.+..+..+|+..+..|.++..++...
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 555677777778777665432 2222333322223344444444447888888998887765321
Q ss_pred --eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 345 --KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 345 --~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.....+......+..+.... ++..++..+.+|.+..++..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~-~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVD-DDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEec-CCCeEEEEecCCeEEEEEHH
Confidence 12222222233444433333 34446666777887777664
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.70 E-value=0.048 Score=60.52 Aligned_cols=148 Identities=14% Similarity=0.208 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEeccCCCceEEEEEcCC----CCEEEEEECCCeEEEEECC-
Q 005096 271 WDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN----GNWVLTASKDQIIKLYDIR- 342 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs---~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd----g~~Lasgs~dg~I~iwDl~- 342 (715)
..|..++|. ||+.++... .+|.+++=| .+.+..| ..|..++|.|- .-.|++.-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 367889998 666444332 344444333 2233333 34889999883 3245555568899999875
Q ss_pred ----CCeEEEEeecCCC-----CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 343 ----AMKELESFRGHRK-----DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 343 ----t~~~~~~~~~h~~-----~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
+.+.+..-.++-+ --..+.|+| ...+|++-.....-.++++......++......+.|.|.+|..||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2333332222211 124678999 777777777666666788877777666655668899999999999777
Q ss_pred EEEE-CCCeEEEEec
Q 005096 414 CSGS-NDHTTKFWCR 427 (715)
Q Consensus 414 ~sgs-~Dg~I~iWdl 427 (715)
+++- ..=.-+|||-
T Consensus 171 VVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEeCCeEEEEEecC
Confidence 6654 3334567764
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.00026 Score=80.62 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=115.5
Q ss_pred EecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--CceEEE-----EeccCCCEEEEEEcC---CCCEEEEEeC
Q 005096 138 TSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS--FNFEMI-----LQAHDHAIRSMVWSH---NDNWMVSGDD 206 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~--~~~~~~-----l~~h~~~V~~l~~sp---dg~~L~tgs~ 206 (715)
..+++..+.|..|.|-... ..++ ..-|.+.|||++- +++... .......+.-|.|.+ +..++..+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 3456788888888885422 2222 3346788998653 433222 222334445555544 5677778888
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
++.|++.+++.... ..+..|...+.+++|...|-.++.+ +++||..|+
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFA 251 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEE
Confidence 88988887765443 3344588777777765443221111 567777777
Q ss_pred EEeCCCcEEEEEC-----CCCceeEEeccCC-CceEEEEEcCC-------CC--EEEEEE-CCCeEEEEECCCCeEEEEe
Q 005096 287 SGGKDSLVKLWDA-----KSGRELCSFHGHK-NMVLCVKWNQN-------GN--WVLTAS-KDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 287 sgs~Dg~I~iwDl-----~s~~~~~~~~~~~-~~I~sl~~spd-------g~--~Lasgs-~dg~I~iwDl~t~~~~~~~ 350 (715)
+++.||.++.|.+ +.-+|+..++.|+ ..-.|.-|+.+ +. ++++++ .+..+++|....++|+..+
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~ 331 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK 331 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh
Confidence 7777776666543 2334455555555 22222223322 11 233333 4557889988877776221
Q ss_pred --------ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 351 --------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 351 --------~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..|+..|+.+..+..--..+++-+-++.|.+|.-+.
T Consensus 332 ~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 332 LIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 122223322211100011234456678888886544
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.65 E-value=0.55 Score=50.49 Aligned_cols=230 Identities=12% Similarity=0.178 Sum_probs=115.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---EEEE----eccCCCEEEEEEcCC---CCEEEEEeC-C--------
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMIL----QAHDHAIRSMVWSHN---DNWMVSGDD-G-------- 207 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~---~~~l----~~h~~~V~~l~~spd---g~~L~tgs~-d-------- 207 (715)
-++|+|.|||++|+ +...|.|++++ .++.. +..+ .........++++++ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 57899999987655 56699999999 33333 2222 123467899999984 344443322 1
Q ss_pred CcEEEEeCCCC-------c-eeeeec---CCCCCeEEEEEecCCCEEEEEECCC-------------cEEEEECCCCe--
Q 005096 208 GAIKYWQNNMN-------N-VKANKS---AHKESVRDLSFCRTDLKFCSCSDDT-------------TVKVWDFARCQ-- 261 (715)
Q Consensus 208 g~I~iwd~~~~-------~-~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg-------------~V~iwdl~~~~-- 261 (715)
..|.-|.+... + ++..+. ........|+|.+|+.++++.+..+ .|.-.|....-
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 23333433322 1 111111 2334556799999997666655432 23333322110
Q ss_pred ----------eEEEecccCCceEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCc--------------------------
Q 005096 262 ----------EERSLTGHGWDVKSVDWHPT-KSLLVSG-GKDSLVKLWDAKSGR-------------------------- 303 (715)
Q Consensus 262 ----------~~~~l~~~~~~I~si~~spd-g~~L~sg-s~Dg~I~iwDl~s~~-------------------------- 303 (715)
....+..--.....++|++. ++++++- +.|..=.|.-++.+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 00111111123457899998 5544332 222222222121111
Q ss_pred ---eeEEeccCCCceEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeEEEE----eecCCCCeEEEEEccCCCCE
Q 005096 304 ---ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES----FRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 304 ---~~~~~~~~~~~I~sl~~sp-------dg~~Lasgs~dg~I~iwDl~t~~~~~~----~~~h~~~V~~l~~sp~~~~~ 369 (715)
.+..+.. ...+..+.|.. ++.+|++....+.|...+++....+.. +......+..|++.+ ++.+
T Consensus 242 ~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~L 319 (331)
T PF07995_consen 242 FVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGAL 319 (331)
T ss_dssp S---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEE
T ss_pred cCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeE
Confidence 1222332 24466666653 345666665667888888875543322 223444789999999 7777
Q ss_pred EEEEeCCCcEE
Q 005096 370 FVSGSLDGSIF 380 (715)
Q Consensus 370 l~sgs~DG~I~ 380 (715)
+++.+.+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777788774
No 433
>PHA03098 kelch-like protein; Provisional
Probab=96.64 E-value=0.054 Score=62.37 Aligned_cols=184 Identities=12% Similarity=0.084 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEE-
Q 005096 197 NDNWMVSGDDGG------AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEER- 264 (715)
Q Consensus 197 dg~~L~tgs~dg------~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~- 264 (715)
++.+++.|+.++ .+..||..+++....-.............-+++.++.|+.+ ..+.+||..+.+-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 456667776542 46778877665432211111111111122356677777765 347778876543221
Q ss_pred -EecccCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC--
Q 005096 265 -SLTGHGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-- 333 (715)
Q Consensus 265 -~l~~~~~~I~si~~spdg~~L~sgs~D------g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-- 333 (715)
.+....... +++. -++++++.|+.+ ..+.+||..+.+-... +...... .+++. -+++++++|+.+
T Consensus 374 ~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGISYI 449 (534)
T ss_pred CCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCccCC
Confidence 111111111 2222 246677777632 3578899876542211 1111111 12222 255666666532
Q ss_pred ------CeEEEEECCCCeEEE--EeecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005096 334 ------QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (715)
Q Consensus 334 ------g~I~iwDl~t~~~~~--~~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~ 387 (715)
..+.+||.++.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||.++.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 238888987654322 12111111122222 56666666654 34666665543
No 434
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.60 E-value=1.3 Score=52.12 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=144.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCe----EEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe------CCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGE----FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD------DGG 208 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~----I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs------~dg 208 (715)
....+...+.++.|+++|..++..+.++. +++.+.. + .+..+...|....|+++++.++... .++
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDG 128 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCC
Confidence 45567788999999999999998874432 3333433 2 3445566788888999888776621 122
Q ss_pred c-------EEEEeCCCC-c-----------eeeeecCCCCCeEEEEEecCCCEEEEEECCCc-------EEEEECCCCee
Q 005096 209 A-------IKYWQNNMN-N-----------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------VKVWDFARCQE 262 (715)
Q Consensus 209 ~-------I~iwd~~~~-~-----------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-------V~iwdl~~~~~ 262 (715)
. +.+|....+ + ...........+...+++.+++.++....+.. ..++.. ....
T Consensus 129 ~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (620)
T COG1506 129 GDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGE 207 (620)
T ss_pred ceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCc
Confidence 2 334432222 1 11122233445666666666666665544332 223333 2334
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCC-C-------cEEEEECCCCceeEEeccCC--CceEEEEEcC-CCCEEEEEE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S-------LVKLWDAKSGRELCSFHGHK--NMVLCVKWNQ-NGNWVLTAS 331 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~D-g-------~I~iwDl~s~~~~~~~~~~~--~~I~sl~~sp-dg~~Lasgs 331 (715)
+..+......+..+.|.++++.++..+.. . .+.+++.+.++....+.... .....+.+.- +...++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (620)
T COG1506 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIAT 287 (620)
T ss_pred eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEe
Confidence 44445555668899999999855544332 2 24444523332222111111 1111111112 233333444
Q ss_pred C-CCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCCceEEEeeccCCCEEEEEE
Q 005096 332 K-DQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 332 ~-dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (715)
. .+...++++..... ..........|..+.+ +++.+++..+.. ..|.+++. .............+....+
T Consensus 288 ~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~---~~~~~~~~~~~~~~~~~~~ 362 (620)
T COG1506 288 DGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR---GEEAKLTSSNNSGLKKVKL 362 (620)
T ss_pred cCCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC---CCceEEeeccccccccccc
Confidence 3 56777776653222 3333444466666665 244454444433 35677765 1112222223334444444
Q ss_pred cCCCCEEEEEECCC-eEEEEecCCCCCcc
Q 005096 407 HPIGYLLCSGSNDH-TTKFWCRNRPGDTA 434 (715)
Q Consensus 407 spdg~~L~sgs~Dg-~I~iWdl~~~~~~~ 434 (715)
.. -+.+..-+.|| +|.-|-+...+...
T Consensus 363 ~~-~e~~~~~~~dG~~i~~~l~~P~~~~~ 390 (620)
T COG1506 363 AE-PEPVTYKSNDGETIHGWLYKPPGFDP 390 (620)
T ss_pred CC-ceEEEEEcCCCCEEEEEEecCCCCCC
Confidence 32 24455566667 88888776555443
No 435
>PLN02153 epithiospecifier protein
Probab=96.55 E-value=0.46 Score=51.28 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCeeEE--Eecc----cCCceEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 005096 239 TDLKFCSCSDD-----TTVKVWDFARCQEER--SLTG----HGWDVKSVDWHPTKSLLVSGGKD-----------SLVKL 296 (715)
Q Consensus 239 d~~~Las~s~D-----g~V~iwdl~~~~~~~--~l~~----~~~~I~si~~spdg~~L~sgs~D-----------g~I~i 296 (715)
++++++.|+.+ ..|.+||+.+.+-.. .+.. ....-.+++. -++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666666643 357888987643322 1110 0111122233 246667777653 24778
Q ss_pred EECCCCc
Q 005096 297 WDAKSGR 303 (715)
Q Consensus 297 wDl~s~~ 303 (715)
||.++.+
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8887654
No 436
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=96.50 E-value=1.9 Score=49.36 Aligned_cols=248 Identities=13% Similarity=0.168 Sum_probs=125.0
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce--EEEEecc-CCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--CceeeeecC
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAH-DHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM--NNVKANKSA 226 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h-~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~--~~~~~~~~~ 226 (715)
..++..++.+.++|.|+...+..... ....-+. ....+++++..++ .+|++|+..|.=.++.+.. -+++..+ .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence 45678899999999998887665331 1222222 3455667776554 4777787766544444443 2333333 3
Q ss_pred CCCCeEEEEEecC----CC------EEEEEE---CCCcEEEEECCCCee--EEEeccc--CCceEEEEEcC-CCCEEEEE
Q 005096 227 HKESVRDLSFCRT----DL------KFCSCS---DDTTVKVWDFARCQE--ERSLTGH--GWDVKSVDWHP-TKSLLVSG 288 (715)
Q Consensus 227 h~~~I~~l~~spd----~~------~Las~s---~Dg~V~iwdl~~~~~--~~~l~~~--~~~I~si~~sp-dg~~L~sg 288 (715)
.-++|.++++... .. .|++++ .+|.++++.-.-.-. ....... -..++.+.... ++.+|+.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4567888888532 12 566665 367888875321111 1111111 23444554432 24577766
Q ss_pred eCCCcEEEEECC---CCceeEEe-----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEE
Q 005096 289 GKDSLVKLWDAK---SGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTA 359 (715)
Q Consensus 289 s~Dg~I~iwDl~---s~~~~~~~-----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~ 359 (715)
..+. -+++.+. ..+.+..+ ......+.+-.+. ++.++=.+ ...|++.|....+....+.. ....|.+
T Consensus 378 ~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 378 FPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp ESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred cCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 6544 4455553 33333222 1122234333333 44455444 34588899887777766543 3445666
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec----cCCCEEEEEEcC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV----HDNTVWDLAWHP 408 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~sp 408 (715)
.++ ++.+++.+..++.+.++.++........... ....|.|+...|
T Consensus 454 a~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASI---NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEE---SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEE---CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 665 4566777777888988888766554333211 356788887654
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.1 Score=50.79 Aligned_cols=173 Identities=11% Similarity=0.103 Sum_probs=100.3
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCce
Q 005096 197 NDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDV 273 (715)
Q Consensus 197 dg~~L~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I 273 (715)
++.++.+.+. ...|++||+.+++.+.........+..=-+..-++++.. .-.||.-.++|.++.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4555555543 356999999988877665433222222222222334433 3357888899998888877665 33344
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe----ccC-CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----HGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~----~~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+.++- |++.|+.++...+++.-|-++-....++ .+. -..++.+.|- ||...|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 45543 4666777766667777776654433322 211 1223444454 56555555455566666777776655
Q ss_pred Eee------------cCCCCeEEEEEccCCCCEEEEE
Q 005096 349 SFR------------GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 349 ~~~------------~h~~~V~~l~~sp~~~~~l~sg 373 (715)
.+. .+..-.+.|++.+..++++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443 2445678899998666777766
No 438
>PLN02153 epithiospecifier protein
Probab=96.44 E-value=0.74 Score=49.65 Aligned_cols=185 Identities=9% Similarity=0.034 Sum_probs=86.8
Q ss_pred CCCEEEEEeCC-------CeEEEEeCCCCceEEEEecc---CC---CEEEEEEcCCCCEEEEEeCC-----CcEEEEeCC
Q 005096 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQAH---DH---AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNN 216 (715)
Q Consensus 155 dg~~Latgs~d-------g~I~Iwd~~~~~~~~~l~~h---~~---~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~ 216 (715)
++++++.|+.+ ..+.+||..+.+-....... .. ....+++ ++++++.|+.+ ..|.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34555566542 35788888775443321110 10 1222232 45666777653 357788887
Q ss_pred CCceeeeecC-----CCCCeEEEEEecCCCEEEEEECC-----------CcEEEEECCCCeeEEEeccc------CCceE
Q 005096 217 MNNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD-----------TTVKVWDFARCQEERSLTGH------GWDVK 274 (715)
Q Consensus 217 ~~~~~~~~~~-----h~~~I~~l~~spd~~~Las~s~D-----------g~V~iwdl~~~~~~~~l~~~------~~~I~ 274 (715)
+.+-...-.. ........+..-++++++.|+.+ ..|.+||.++.+-.. +... .....
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcce
Confidence 6543221110 11111222223355666666643 247788887643322 1111 11112
Q ss_pred EEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceeEEec-c--C-CCceEEEEEcCCCCEEEEEECC----
Q 005096 275 SVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGRELCSFH-G--H-KNMVLCVKWNQNGNWVLTASKD---- 333 (715)
Q Consensus 275 si~~spdg~~L~sgs~D-------------g~I~iwDl~s~~~~~~~~-~--~-~~~I~sl~~spdg~~Lasgs~d---- 333 (715)
.+.+ +++++++++.+ ..|.+||+.+.+-...-. + . .....+++ .-++++++.|+..
T Consensus 189 ~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 189 FAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDL 265 (341)
T ss_pred EEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcc
Confidence 2222 45666655432 458889988654332211 0 0 11112222 2246667777641
Q ss_pred ----------CeEEEEECCCCe
Q 005096 334 ----------QIIKLYDIRAMK 345 (715)
Q Consensus 334 ----------g~I~iwDl~t~~ 345 (715)
..|..||+.+.+
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccccEEEEEcCccE
Confidence 257788876544
No 439
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=96.31 E-value=2.8 Score=50.51 Aligned_cols=235 Identities=12% Similarity=0.110 Sum_probs=126.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------E--EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-------E--MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-------~--~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~- 216 (715)
|..-.+.++...+++.+.+|.|+..++.+... . ..++. +..+..+......+.|+..+.+|.+...+..
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677889999999999886554321 1 11122 2344444444455666666667777665432
Q ss_pred --CC------cee---eeecCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECCCCee-------EEEecccCCceEEE
Q 005096 217 --MN------NVK---ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-------ERSLTGHGWDVKSV 276 (715)
Q Consensus 217 --~~------~~~---~~~~~h~~~I~~l~~s--pd~~~Las~s~Dg~V~iwdl~~~~~-------~~~l~~~~~~I~si 276 (715)
.. ..+ ..+.....-|.++.+. .++.+++..+.+|.++..++..... ...+.. .+.+..+
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v 644 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISV 644 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEE
Confidence 11 111 1122222234444432 3556899999999999988754321 112222 3444444
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC----
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---- 343 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t---- 343 (715)
....+...|+..+..|.+..+.+.. |.....+. ....|.++....+..+|+..+..|.++...+..
T Consensus 645 ~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 645 RLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 4444445677777778776665432 11222233 233455555444556788888899888876532
Q ss_pred ---CeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 344 ---MKELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 344 ---~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
++-+.. +......+..+.... ++..++..+.+|.+..++..
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~-~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVD-DDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEec-CCCeEEEEecCCeEEEeeHh
Confidence 122222 222234444444443 34456666778877777654
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.26 E-value=1.8 Score=44.97 Aligned_cols=219 Identities=14% Similarity=0.176 Sum_probs=123.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCceeeeecC-----CCCCeEEEEEecCCC------------EEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNN-------MNNVKANKSA-----HKESVRDLSFCRTDL------------KFC 244 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~-------~~~~~~~~~~-----h~~~I~~l~~spd~~------------~La 244 (715)
-+.|++++.+-+-++....+...+||.+ ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578899988777777777899999986 1223333321 234567777764322 367
Q ss_pred EEECCCcEEEEECCCCe-----eEEEec-ccCCc-eEEEEEcC--CCCEEEEE-eCCCcEEEEECCCCceeE--EeccC-
Q 005096 245 SCSDDTTVKVWDFARCQ-----EERSLT-GHGWD-VKSVDWHP--TKSLLVSG-GKDSLVKLWDAKSGRELC--SFHGH- 311 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~~~-----~~~~l~-~~~~~-I~si~~sp--dg~~L~sg-s~Dg~I~iwDl~s~~~~~--~~~~~- 311 (715)
.+++||+|.-|.-.-.. ....+. ..... -+.+++.. .+++|+.+ -..++|.+||-.-.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 88999999999852211 112222 11122 33455543 24455444 467889999855322110 01100
Q ss_pred ------CCce---------EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEcc-----CCCCE
Q 005096 312 ------KNMV---------LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHP-----FHEEY 369 (715)
Q Consensus 312 ------~~~I---------~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp-----~~~~~ 369 (715)
.-.| +-..-.++.+.=+.+..-|.|-+||+. ++.++++. +.-..-..|+..| ..+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0001 111111222222233345789999986 78887774 2223445565544 35678
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccC-----CCEEEEEEcC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHD-----NTVWDLAWHP 408 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~sp 408 (715)
|+---.||+|.+||..++..+-.+..... ..+|.|.|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 88777899999999987765544443222 2467888865
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.26 E-value=0.00081 Score=76.71 Aligned_cols=226 Identities=15% Similarity=0.203 Sum_probs=124.2
Q ss_pred CeEEEEeCCCCc-eEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--Cceee-----eecCCCCCeEEEEE
Q 005096 166 GEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM--NNVKA-----NKSAHKESVRDLSF 236 (715)
Q Consensus 166 g~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~--~~~~~-----~~~~h~~~I~~l~~ 236 (715)
+-|++-|..+.- ....+++..+.|-.+.|...+ ..+. ..-|.+.|||++. +++.. ........+.-|.|
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 447777765432 223455677888888885432 2222 3347788998653 33222 22223344555666
Q ss_pred ec---CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC
Q 005096 237 CR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 237 sp---d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~ 313 (715)
++ +..++..+..+++|++.++++... ..+.+|...+..++|...|-+++.+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------- 242 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------- 242 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------
Confidence 65 556677777788888887765433 4455688888888776554322221
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEEC-----CCCeEEEEeecCCC-CeEEEEEccCCC---------CEEEEEeC-CC
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDI-----RAMKELESFRGHRK-DVTALAWHPFHE---------EYFVSGSL-DG 377 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl-----~t~~~~~~~~~h~~-~V~~l~~sp~~~---------~~l~sgs~-DG 377 (715)
+|+||..|++++.||.+++|.+ +.-+++..++.|++ .-.|.-|+. .. .+++++++ +.
T Consensus 243 ------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nr 315 (1283)
T KOG1916|consen 243 ------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNR 315 (1283)
T ss_pred ------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCCc
Confidence 7788888888888887777654 33345556666653 222222322 11 12344443 34
Q ss_pred cEEEEEcCCCCceEE-------EeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 378 SIFHWLVGHETPQVE-------IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
.+++|......+.+. +...|++.|+.+....- -..+++-+-|+.|++|-
T Consensus 316 e~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 316 EEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 588887665554422 22233334433221100 11244456677888884
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.26 E-value=1.6 Score=44.45 Aligned_cols=237 Identities=12% Similarity=0.011 Sum_probs=144.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee--
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN-- 223 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~-- 223 (715)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+..-++-+.. .|.-.|-++.+....
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44677888999888888888888888888888877766666777788888888766654333 444445544443221
Q ss_pred -ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 224 -KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 224 -~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
.+.-........|.+.+++-+++.. |.---.|-.+. .++.+.. ....-..|+..+||..-++...++.|...|..+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 2334556778889999988887753 21111222111 1222221 234567889999999888888888888888877
Q ss_pred CceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 302 GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 302 ~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
+.....- +......+.+--++.++.-++....+.+..||-.+..- ...+.+.+..-.++.+.. .++...+--..|.
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~aga 298 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADAGA 298 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeeccccCc
Confidence 6322211 22233345555667788777777778888888764331 122334444455555544 3344343334455
Q ss_pred EEEEEcCC
Q 005096 379 IFHWLVGH 386 (715)
Q Consensus 379 I~iwd~~~ 386 (715)
|.-+|-++
T Consensus 299 i~rfdpet 306 (353)
T COG4257 299 IGRFDPET 306 (353)
T ss_pred eeecCccc
Confidence 55555433
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=96.25 E-value=0.18 Score=57.21 Aligned_cols=181 Identities=13% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeecC
Q 005096 155 TGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 155 dg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~~~~~~~ 226 (715)
++..+++|+.++ ++..||..+.+....-.-.... -.+++ .-++.+.++|+.+ ..+..||..++.-...-.-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455566776543 4677887765433322111111 11222 2356777777754 4577888765533221111
Q ss_pred CCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCeeEE--EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~D---g~V~iwdl~~~~~~~--~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
...........-+++..+.|+.+ ..+..||.++.+-.. .+.........+++ ++++.+.| |.+.+||.++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCC
Confidence 11111112222366677777654 347788876543322 11111111222233 45666665 4577888876
Q ss_pred CceeE--EeccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 005096 302 GRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRA 343 (715)
Q Consensus 302 ~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t 343 (715)
.+-.. .+.........+.+ ++++.++|+.+ ..|.+||.++
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 54322 12211122222222 56667777644 2455555554
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.24 E-value=3.8 Score=49.34 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=96.1
Q ss_pred ccCCCEEEEEEc---C--C--CCEEEEEeCCCcEEEEeCCCC---------------ceeeeec---CCCCCeEEEEEec
Q 005096 184 AHDHAIRSMVWS---H--N--DNWMVSGDDGGAIKYWQNNMN---------------NVKANKS---AHKESVRDLSFCR 238 (715)
Q Consensus 184 ~h~~~V~~l~~s---p--d--g~~L~tgs~dg~I~iwd~~~~---------------~~~~~~~---~h~~~I~~l~~sp 238 (715)
.....|..|+|. . + .++|++= ....+.|+...-. ..+..+. .......+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 1 2355543 4456677762111 1122221 2344678899998
Q ss_pred -CCCEEEEEECCCcEEEEECCCCe-----eEEEeccc----------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005096 239 -TDLKFCSCSDDTTVKVWDFARCQ-----EERSLTGH----------GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 239 -d~~~Las~s~Dg~V~iwdl~~~~-----~~~~l~~~----------~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~ 302 (715)
+...||+....|...|||+.... ........ .+.-..|.|..+.+.|++++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 44679999999999999992111 11111111 123347889888888887766 66899999977
Q ss_pred ceeE--EeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCC
Q 005096 303 RELC--SFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 303 ~~~~--~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t 343 (715)
.... .......+|..+.-+++ -+++++-+ ...|.+.|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 5532 22335567889988876 23333333 36788888876
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.91 Score=49.14 Aligned_cols=151 Identities=9% Similarity=0.150 Sum_probs=92.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----
Q 005096 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---- 220 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~---- 220 (715)
+.+-|...++.|++..+ |.+.=|.++.. -.+..-...++.|.+|.|+.|.+.||+--.|.+|.+++....+.
T Consensus 26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 44555544554444443 34555543322 22223334567999999999999999999999999998743321
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKLW 297 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs--~Dg~I~iw 297 (715)
..+.+.....|...+|+.+ .-+|..++.| +-+|-+.. ...++..+.+...|+-..|.++.+.++.++ ..+++.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 2222344556899999865 5566666554 56665532 234555667788899999998887544433 33444444
Q ss_pred ECCC
Q 005096 298 DAKS 301 (715)
Q Consensus 298 Dl~s 301 (715)
-+++
T Consensus 183 ~~~~ 186 (657)
T KOG2377|consen 183 HFRA 186 (657)
T ss_pred EEee
Confidence 4443
No 446
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.15 E-value=1.8 Score=52.17 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----c-eeEEeccCC----------CceEEEEEcCCCCEEEEEECC
Q 005096 270 GWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG----R-ELCSFHGHK----------NMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 270 ~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~----~-~~~~~~~~~----------~~I~sl~~spdg~~Lasgs~d 333 (715)
+....+|+|+|.. +.||+....|+..|||+... . .+....... +.-..|.|..+.+.|++++ .
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence 4467899999854 58999999999999999211 1 111111111 2234788988888888886 5
Q ss_pred CeEEEEECCCCeEEE--EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 334 QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 334 g~I~iwDl~t~~~~~--~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..+.++|+++..... ........|.++.-++.+..+++.-+. ..|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 578899999776533 222345678889888854455444433 4677777766
No 447
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.09 E-value=0.72 Score=49.31 Aligned_cols=105 Identities=9% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce---eeeecCCCCCe--EEEEEecCCCEEEEEEC-----CCcEEEEECCCCe
Q 005096 197 NDNWMVSGDDG-----GAIKYWQNNMNNV---KANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQ 261 (715)
Q Consensus 197 dg~~L~tgs~d-----g~I~iwd~~~~~~---~~~~~~h~~~I--~~l~~spd~~~Las~s~-----Dg~V~iwdl~~~~ 261 (715)
++++++.|+.+ ..+..||+.+... ...+....... .+++. -++++++.|+. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777654 3466667665542 11211111111 12222 25566666654 2468888886543
Q ss_pred eE--EEecccCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 005096 262 EE--RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGR 303 (715)
Q Consensus 262 ~~--~~l~~~~~~I~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~ 303 (715)
-. ..+.... .....+..-++++++.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22 2221111 111222223467777777654 35688887654
No 448
>PRK05560 DNA gyrase subunit A; Validated
Probab=96.06 E-value=2.7 Score=50.66 Aligned_cols=232 Identities=11% Similarity=-0.024 Sum_probs=126.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCce---------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---C---
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNMNNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---R--- 259 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~~~~---------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~--- 259 (715)
..+...+++-+.+|.|+-.++..... ...+ ...+.+..+..+.....|+..+..|.+...... .
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~kl-Ke~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKT-KEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCcccccc-CCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 34567788889999998876543211 0111 123456666666677778888888887776542 1
Q ss_pred ---CeeE---EEecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCC
Q 005096 260 ---CQEE---RSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 260 ---~~~~---~~l~~~~~~I~si~~sp--dg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg 324 (715)
+..+ ..+.....-|.++.+.. +..++++.+.+|.++..++.. +.....++. .+.+..+......
T Consensus 574 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~ 652 (805)
T PRK05560 574 TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGD 652 (805)
T ss_pred CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCC
Confidence 2222 11222233355555552 567899999999998876542 222333443 3344444444455
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------C
Q 005096 325 NWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T 388 (715)
Q Consensus 325 ~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~ 388 (715)
..|+..+..|.+..+.... |..+..+.. ...|.++.....++.+++..+..|.++...+..- .
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 6677777788777666532 222223322 2334444333323346788888898887764211 1
Q ss_pred ceEEEe-eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 389 PQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 389 ~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
....+. ....+.+..+....+...++..+.+|.+..++.+.
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 111111 11123443333333344566667788887777643
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.00 E-value=0.66 Score=49.63 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=51.4
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCee---EEEecccCCc--eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCc
Q 005096 239 TDLKFCSCSDD-----TTVKVWDFARCQE---ERSLTGHGWD--VKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGR 303 (715)
Q Consensus 239 d~~~Las~s~D-----g~V~iwdl~~~~~---~~~l~~~~~~--I~si~~spdg~~L~sgs~-----Dg~I~iwDl~s~~ 303 (715)
++.+++.|+.+ ..+..||+.+.+. ...+...... -.+++.. ++++++.|+. ...+.+||+++.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55566666654 3567777765442 1222111111 1122222 4666666664 2358888987654
Q ss_pred eeE--EeccCCCceEEEEEcCCCCEEEEEECCC----eEEEEECCCCe
Q 005096 304 ELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMK 345 (715)
Q Consensus 304 ~~~--~~~~~~~~I~sl~~spdg~~Lasgs~dg----~I~iwDl~t~~ 345 (715)
-.. .+.. .......+..-++++.+.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 221 1211 11112222223566777776653 35688887654
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.25 Score=48.15 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=94.2
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEeccCCCce
Q 005096 239 TDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 315 (715)
Q Consensus 239 d~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~-L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I 315 (715)
++.++.+.+. ...|++||+++++.+.+..-....+..=-...-+++ ....-.|+.-.+||.++-+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4455555544 457999999988877654422111111111111332 3334567888999999988887765 44445
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-----CCeEEEEEccCCCCEEE----------EEeCCCcEE
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-----KDVTALAWHPFHEEYFV----------SGSLDGSIF 380 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~----------sgs~DG~I~ 380 (715)
+.++. |++.|+.++...+++.-|-++...+.++.... ..++.+.|. ++.++| .--..|+|.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence 56553 45557777666778888877655544332111 122333333 233322 222334444
Q ss_pred EE-EcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEE
Q 005096 381 HW-LVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSG 416 (715)
Q Consensus 381 iw-d~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sg 416 (715)
-| |+..-.........+.+..+.|++.+++ ++++||
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33 4433333333334456678899999986 555555
No 451
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.96 E-value=5.3 Score=47.76 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=76.1
Q ss_pred CcEEEEECC-CCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCC
Q 005096 292 SLVKLWDAK-SGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFH 366 (715)
Q Consensus 292 g~I~iwDl~-s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~ 366 (715)
|.++.|++- .++.+.-+.. -...+ .++.+...++++| ....+++||+-..+.++..+ .....|+.+.+ .
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~ 985 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---Y 985 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee---c
Confidence 446666653 3333322221 12233 3445655566655 46799999998776655443 34566788887 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 367 EEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
...|++|...-.|.++..+.+......+.. -...|+++.+- |...++.+..-|.+.+-++-
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 677777776666766666554444333322 23356776665 44567777777777766653
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.94 E-value=1.2 Score=48.12 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCceeeeecCCCCCeEEE-EE-ecCCCEEEEEECC
Q 005096 197 NDNWMVSGDDG-----------GAIKYWQNNMNNVKANKSAHKESVRDL-SF-CRTDLKFCSCSDD 249 (715)
Q Consensus 197 dg~~L~tgs~d-----------g~I~iwd~~~~~~~~~~~~h~~~I~~l-~~-spd~~~Las~s~D 249 (715)
++++.++|+.+ ..+..||..+++-.............. +. .-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777753 246677877654332211111111111 11 2366777777654
No 453
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=95.92 E-value=2.7 Score=50.67 Aligned_cols=232 Identities=11% Similarity=-0.022 Sum_probs=128.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCce---------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----
Q 005096 194 WSHNDNWMVSGDDGGAIKYWQNNMNNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----- 259 (715)
Q Consensus 194 ~spdg~~L~tgs~dg~I~iwd~~~~~~---------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~----- 259 (715)
+.++...+++-+.+|.|+-.++.+... ...+ ...+.+..+..+.....|+..+.+|.+...+...
T Consensus 492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~kl-Ke~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADM-KDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCcccccc-CCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence 344566788889999998876543221 0111 1245666666677777788888888877765422
Q ss_pred ----CeeE---EEecccCCceEEEEEc--CCCCEEEEEeCCCcEEEEECCCCc-------eeEEeccCCCceEEEEEcCC
Q 005096 260 ----CQEE---RSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKLWDAKSGR-------ELCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 260 ----~~~~---~~l~~~~~~I~si~~s--pdg~~L~sgs~Dg~I~iwDl~s~~-------~~~~~~~~~~~I~sl~~spd 323 (715)
+..+ ..+.....-|.++.+. .++.+++..+.+|.++..+++.-+ ....+.. .+.+..+....+
T Consensus 571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~ 649 (800)
T TIGR01063 571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSG 649 (800)
T ss_pred cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCC
Confidence 1111 1222223334455543 245688899999999988765321 1222333 344544444445
Q ss_pred CCEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC-------C
Q 005096 324 GNWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH-------E 387 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~-------~ 387 (715)
...|+..+.+|.+..+.... |.....+. .+..|.++.... ++..|+..+..|.++...+.. .
T Consensus 650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~-~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVS-EESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEec-cccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 56677777788766665432 22222222 223355544443 455778888899888776531 1
Q ss_pred CceEEEe-eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 388 TPQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 388 ~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.....+. ....+.+..+....+...++..+.+|.+..++.+.
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
Confidence 1111111 11223444444444445567777788887777643
No 454
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.91 E-value=0.99 Score=49.48 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCCEEEEEeCCC-----------cEEEEeCCCCceeeeecCCCCCeE-EEEEe-cCCCEEEEEECC
Q 005096 197 NDNWMVSGDDGG-----------AIKYWQNNMNNVKANKSAHKESVR-DLSFC-RTDLKFCSCSDD 249 (715)
Q Consensus 197 dg~~L~tgs~dg-----------~I~iwd~~~~~~~~~~~~h~~~I~-~l~~s-pd~~~Las~s~D 249 (715)
++++++.|+.+. .+..||..++.-...-........ ..+.. -++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566667776532 466778776543332111111111 11222 366777777653
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=95.90 E-value=0.33 Score=55.04 Aligned_cols=180 Identities=9% Similarity=-0.028 Sum_probs=84.8
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC--CcEEEEECCCCeeE--EEec
Q 005096 197 NDNWMVSGDDGG-----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE--RSLT 267 (715)
Q Consensus 197 dg~~L~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D--g~V~iwdl~~~~~~--~~l~ 267 (715)
++.++++|+.++ .+..||..+++....-.-...........-++...++|+.+ ..+..||..+.+-. ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345567776543 46677777654322211111111111122366666777653 45788887554322 2222
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKDS---LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~Dg---~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
........+++ ++++.++|+.++ .+..||.++.+-... +.........++ -++++.++| |.+.+||.+
T Consensus 351 ~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 351 KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCC
Confidence 11112222333 477777777553 477888876532221 111111112222 245555555 457788887
Q ss_pred CCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCC-----cEEEEEcCC
Q 005096 343 AMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-----SIFHWLVGH 386 (715)
Q Consensus 343 t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~ 386 (715)
+.+- +..+.........+.+ ++.++++|+.++ .|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceEEEEECCC
Confidence 6433 2222222222222222 677777777542 345555543
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.67 Score=53.14 Aligned_cols=193 Identities=10% Similarity=0.106 Sum_probs=102.4
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee---ecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~spd~~~ 242 (715)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...+|+++||++........ .......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 347788765 44444444444588899999665 555667899999999764332221 12233345555555444
Q ss_pred EEEEECCCcEEEEECCCCeeEEEecc-cCCce--EEEEEcCCCC---EEEEEe-CCCcEEEEECCCC-ceeEEeccCCCc
Q 005096 243 FCSCSDDTTVKVWDFARCQEERSLTG-HGWDV--KSVDWHPTKS---LLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNM 314 (715)
Q Consensus 243 Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I--~si~~spdg~---~L~sgs-~Dg~I~iwDl~s~-~~~~~~~~~~~~ 314 (715)
+++-..+|.|.+.+-.....++++.. ..... +|-+...++. .|+-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 44444555555544322222233222 11111 2222222221 111111 111 112222211 112223333466
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-CeEEEEEc
Q 005096 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DVTALAWH 363 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~-~V~~l~~s 363 (715)
+..+++|++.++|+.-..+|.|.+-+++..+++..+..... .-..++|+
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 88899999999999999999999999988888877764332 22255665
No 457
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.88 E-value=0.29 Score=56.03 Aligned_cols=224 Identities=12% Similarity=0.183 Sum_probs=115.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.|-..++.+.|.-++--++....|-+ ..+. ..++..-+..|...+||.|.+.++....+..|.+++..-.-.
T Consensus 74 ~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~i 146 (1243)
T COG5290 74 KHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPI 146 (1243)
T ss_pred hhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccccc
Confidence 45666677776665544444444332 1111 222233457788899999999777777777888776321100
Q ss_pred ee-eec----CCCCCeEEEEEec-----------------------CCCEEEEEECCCcEEEE--ECCC--------C--
Q 005096 221 KA-NKS----AHKESVRDLSFCR-----------------------TDLKFCSCSDDTTVKVW--DFAR--------C-- 260 (715)
Q Consensus 221 ~~-~~~----~h~~~I~~l~~sp-----------------------d~~~Las~s~Dg~V~iw--dl~~--------~-- 260 (715)
.. .++ ..-+.-..+.|.. |...|.....+.++..| |.+- .
T Consensus 147 se~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~pr 226 (1243)
T COG5290 147 SEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPR 226 (1243)
T ss_pred chhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccc
Confidence 00 000 0000111222321 11223344445566667 3210 0
Q ss_pred eeEEEec------ccC----CceEEEEEcCCCCEEEEEeCCCc-----EEEEECC---CCceeEEeccCCCceEEEEEcC
Q 005096 261 QEERSLT------GHG----WDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAK---SGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 261 ~~~~~l~------~~~----~~I~si~~spdg~~L~sgs~Dg~-----I~iwDl~---s~~~~~~~~~~~~~I~sl~~sp 322 (715)
...+.+. ... +.-..++|-|.|..+++-..||. |.++.-+ -|+.-.. .+....+..++|+-
T Consensus 227 ra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~ 305 (1243)
T COG5290 227 RAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNL 305 (1243)
T ss_pred cceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhH
Confidence 0011111 111 11234899999999998775553 5555432 1221111 12344567778876
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
....++++ ..+.|++|-..+..-.......-..+.-+.|+|...+.|...+
T Consensus 306 ~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 306 LSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred HHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 66555554 4678999998776555444445566778888886555544433
No 458
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.86 E-value=3.8 Score=46.46 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=62.7
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC---ceEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 005096 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW---DVKSVDWHPTKSLLVSGGK-------------DSLVKLW 297 (715)
Q Consensus 234 l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~---~I~si~~spdg~~L~sgs~-------------Dg~I~iw 297 (715)
+...++|.+++... ..++.+|+. ++.+..+..... .-.++...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56667887776555 678888875 444444432221 1356778889998887772 1235666
Q ss_pred ECCCCceeEEecc--C-----------------------C--CceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEE
Q 005096 298 DAKSGRELCSFHG--H-----------------------K--NMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELES 349 (715)
Q Consensus 298 Dl~s~~~~~~~~~--~-----------------------~--~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t~~~~~~ 349 (715)
| .+|+.+..+.. | . --++++.+.+..+.|++.+. -..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 67776655421 1 0 12789999884444555554 55899999889888877
Q ss_pred eecC
Q 005096 350 FRGH 353 (715)
Q Consensus 350 ~~~h 353 (715)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 7544
No 459
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.89 Score=52.91 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCC
Q 005096 681 QMPMMPGYNPFQSGN 695 (715)
Q Consensus 681 ~~~~~~~~~~~~~~~ 695 (715)
-.++|++..|+++..
T Consensus 183 ~~~~~~~a~pp~a~~ 197 (1007)
T KOG1984|consen 183 RASGMPPAFPPGAQM 197 (1007)
T ss_pred cCCCCCCCCCCccCC
Confidence 334555555555444
No 460
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.79 E-value=2.6 Score=42.99 Aligned_cols=222 Identities=10% Similarity=0.017 Sum_probs=132.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE--
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-- 265 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-- 265 (715)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+..-++-+.. .|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34567778888888888888888888888888887776777777788888888776664444 455556555433321
Q ss_pred -ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 266 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 266 -l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.+.-........|+++|++-+++.. |.---.|-.+ ..+.++.. ....-..|+..+||...++.-.++.|-..|..+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1223456788899999998887753 2211112211 12233321 223356788889999888777778888888776
Q ss_pred CeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 344 MKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 344 ~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
+.. ..+. ........+-.++ -+...++....+.+..||-........-+.+.+..-.++.....++.-.
T Consensus 220 ~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 220 GHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred CCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 622 2221 1122333444444 5666677667777777776554432222222333344444444444333
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.38 Score=55.02 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=98.4
Q ss_pred CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE---ecccCCceEEEEEcCCCCE
Q 005096 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS---LTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~---l~~~~~~I~si~~spdg~~ 284 (715)
-.|+||++.. .+...+......+..+.|+.+ ..|++...||+++||++........ +......|..+.+..+|
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 4577777653 333333333447888999865 4577788999999999853322221 12223345444444344
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc-CCCce--EEEEEcCCCC---EEEEEE-CCCeEEEEECCCC-eEEEEeecCCCC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHG-HKNMV--LCVKWNQNGN---WVLTAS-KDQIIKLYDIRAM-KELESFRGHRKD 356 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~-~~~~I--~sl~~spdg~---~Lasgs-~dg~I~iwDl~t~-~~~~~~~~h~~~ 356 (715)
+++-..+|.|.+.+-.....++++.. ..... +|-+...++. .|+-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 33333445554443222222233221 11111 2222222211 111111 000 011111111 112223333467
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
+..+++|+ +..+|+--..+|.|.+-+++.......+.......-..++|..+.
T Consensus 219 ~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 219 VVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 88899998 899999999999999988877666555443323333356665443
No 462
>PLN02193 nitrile-specifier protein
Probab=95.74 E-value=1.7 Score=49.19 Aligned_cols=189 Identities=8% Similarity=-0.029 Sum_probs=89.6
Q ss_pred CCCEEEEEeCC-------CeEEEEeCCCCceEEEEec--cC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 005096 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQA--HD--HAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs~d-------g~I~Iwd~~~~~~~~~l~~--h~--~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~ 218 (715)
++.+++.|+.+ ..+.+||+++.+....-.. .. ......+..-++++++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2477888877544321110 00 111111112245666777654 35778888775
Q ss_pred ceeeeecC---CCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEE
Q 005096 219 NVKANKSA---HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 219 ~~~~~~~~---h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L 285 (715)
+-...... ........+..-++++++.|+.+ ..+.+||+.+.+-...-. ........+.+ +++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEE
Confidence 43322111 01111111222355666666654 346778876654322110 01111122222 46777
Q ss_pred EEEeCC----CcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECC--------------CeEEEEECCC
Q 005096 286 VSGGKD----SLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIRA 343 (715)
Q Consensus 286 ~sgs~D----g~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~d--------------g~I~iwDl~t 343 (715)
+.++.+ ..|.+||+.+.+-...-.. ......+++ .-++++++.|+.+ ..+.+||+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 777655 4588999987653322110 111122222 2256677777643 2478888876
Q ss_pred CeE
Q 005096 344 MKE 346 (715)
Q Consensus 344 ~~~ 346 (715)
.+-
T Consensus 412 ~~W 414 (470)
T PLN02193 412 LQW 414 (470)
T ss_pred CEE
Confidence 543
No 463
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.73 E-value=2.7 Score=48.55 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=88.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE--Eecc-cC------CceEEEEEcCCCCEEEEEeC-C---Cc
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTG-HG------WDVKSVDWHPTKSLLVSGGK-D---SL 293 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--~l~~-~~------~~I~si~~spdg~~L~sgs~-D---g~ 293 (715)
.++.|..|.|..+++.+++...+|.|.+||........ .+.. +. .-|.........+++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 47789999999999999999999999999993322211 1111 11 11222221122345554444 3 24
Q ss_pred EEEEECC-CCceeEEec---cCCCce--EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-----C-CCeEEEE
Q 005096 294 VKLWDAK-SGRELCSFH---GHKNMV--LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-----R-KDVTALA 361 (715)
Q Consensus 294 I~iwDl~-s~~~~~~~~---~~~~~I--~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-----~-~~V~~l~ 361 (715)
++++.+. +...+..+. .+.... ..+++. +|.+... .+++|.+|++-..+...++... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777771 122222222 112222 233333 4543333 6889999999888776665422 1 2333443
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
--. .+++|++ .+..|++.|+.....+.++
T Consensus 285 ~~s-~nRvLLs--~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 285 PPS-PNRVLLS--VNNKIYLLDLKFESILSEF 313 (670)
T ss_pred cCC-CCeEEEE--cCCEEEEEeehhhhhhhhh
Confidence 222 3555553 3568999998765544333
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.24 Score=54.06 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=90.5
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE-------EEEEECCCcEEEEECCC-CeeEEEe
Q 005096 196 HNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFAR-CQEERSL 266 (715)
Q Consensus 196 pdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~-------Las~s~Dg~V~iwdl~~-~~~~~~l 266 (715)
.|.++|+ .+.....++-.|++.++++..+..+... -+.|.++.+. -++|-.+..|.-.|-+- +..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3445554 4555567777889999999888777665 4566664321 23344455555556532 2222221
Q ss_pred c----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 267 T----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 267 ~----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
. .......|..-. ...++++++..|.|++||--..+....+.+....|..|..+.+|++|++.| ...|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 1 112233333333 345899999999999999654444445566677899999999999998887 4577787875
No 465
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.62 E-value=0.16 Score=55.30 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=90.9
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC--------CEEEEEeCCCcEEEEeCCC-C-ceee
Q 005096 154 PTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--------NWMVSGDDGGAIKYWQNNM-N-NVKA 222 (715)
Q Consensus 154 pdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg--------~~L~tgs~dg~I~iwd~~~-~-~~~~ 222 (715)
.|..+|+ .|.....++-.|++.++.+..+..|+.. -+.|.|+. ..|+ |-.+..|.-.|-.. + ++..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444 4555667888899999999999988766 45666643 2343 44444444444332 2 2111
Q ss_pred ee-c--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 223 NK-S--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 223 ~~-~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.- + ..+....+..-. .+.+||+++..|.|++||--.......+.+.+..|..|..+.+|++|++.|. .+|.+-|+
T Consensus 554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 0 112222333222 4568999999999999996544445566777889999999999998887776 66778776
Q ss_pred C
Q 005096 300 K 300 (715)
Q Consensus 300 ~ 300 (715)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 5
No 466
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.49 E-value=6.2 Score=45.09 Aligned_cols=231 Identities=10% Similarity=0.067 Sum_probs=118.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCC-CCCeEEEEEecCC-CEEEEEEC--CCcEEEEECCCCeeEEEecc
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAH-KESVRDLSFCRTD-LKFCSCSD--DTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h-~~~I~~l~~spd~-~~Las~s~--Dg~V~iwdl~~~~~~~~l~~ 268 (715)
..++..++.+.++|.+.+..+.... ......+. ....+++++..++ .+|+.|+. |+.+..|.....+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4456788899999999988776544 22222222 4556677777655 36777776 4455556644445555554
Q ss_pred cCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCceeE----EeccC--CCceEEEEEcC-CCCEEE
Q 005096 269 HGWDVKSVDWHPT----KS------LLVSGG---KDSLVKLWDAKSGRELC----SFHGH--KNMVLCVKWNQ-NGNWVL 328 (715)
Q Consensus 269 ~~~~I~si~~spd----g~------~L~sgs---~Dg~I~iwDl~s~~~~~----~~~~~--~~~I~sl~~sp-dg~~La 328 (715)
.-+.|.++++... .. .|++++ .+|.|++.. .|-.+. ..... -..++.+.... +..+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4457888887531 11 455554 467788773 222222 11111 23455555433 256777
Q ss_pred EEECCCeEEEEECC---CCeEEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE
Q 005096 329 TASKDQIIKLYDIR---AMKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (715)
Q Consensus 329 sgs~dg~I~iwDl~---t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~ 403 (715)
++..+ .-+|+.+. ..+.+..+. +.......|......+..++=.... .|++.+....+............|.+
T Consensus 376 ~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 376 LSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp EEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SE
T ss_pred EEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 76655 44566553 333332221 2222222333222235566655544 57788876655544443334556666
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.+++ +.+++.+..++.+.++.++....
T Consensus 454 a~~~--~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 454 ASIN--DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEES--SSEEEEEE-TTEEEEEEEETTEE
T ss_pred EEEC--CCEEEEEEeCCcEEEEEEECCce
Confidence 6664 45677777789999998865444
No 467
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.39 E-value=4.1 Score=42.79 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=92.7
Q ss_pred cEEEEECCCCeeEEEecc------cCCceEEEEEcCCC-----CEEEEEe-CCCcEEEEECCCCceeEEeccC-------
Q 005096 251 TVKVWDFARCQEERSLTG------HGWDVKSVDWHPTK-----SLLVSGG-KDSLVKLWDAKSGRELCSFHGH------- 311 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~l~~------~~~~I~si~~spdg-----~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~~------- 311 (715)
+|.+||+.+.+.++++.- ....+..+.+.... .+++.+. ..+-|.|+|+++++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577888888887776642 24567788877632 2333333 3357999999998765554321
Q ss_pred ------------CCceEEEEEcC---CCCEEEEEECCC-eEEEEEC---CCCe---------EEEEeecCCCCeEEEEEc
Q 005096 312 ------------KNMVLCVKWNQ---NGNWVLTASKDQ-IIKLYDI---RAMK---------ELESFRGHRKDVTALAWH 363 (715)
Q Consensus 312 ------------~~~I~sl~~sp---dg~~Lasgs~dg-~I~iwDl---~t~~---------~~~~~~~h~~~V~~l~~s 363 (715)
...+..++.++ ++++|+.....+ .++-... ++.. .+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12356666655 667777766444 2222221 1111 112221112456677888
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCc---eEEEeecc--CCCEEEEEEcC--CCCEEEEEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETP---QVEIHNVH--DNTVWDLAWHP--IGYLLCSGS 417 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~---~~~~~~~h--~~~V~~l~~sp--dg~~L~sgs 417 (715)
+ ++.++++--..+.|..|+.+.... ...+.... -..+.++.+.. +|.+.+.+.
T Consensus 195 ~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 P-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp T-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred C-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 7 888888888899999999876321 11222221 24678888888 666555543
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.37 E-value=4.4 Score=43.96 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEe----cCCCE--EEEEE-CC---CcEEEEECC--CCeeEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC----RTDLK--FCSCS-DD---TTVKVWDFA--RCQEER 264 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s----pd~~~--Las~s-~D---g~V~iwdl~--~~~~~~ 264 (715)
...+|+....++-+.+||+....+.. +. ...++.+.+. -+++. |++++ .+ .+|++|.+. ++. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 45678888888999999998665433 32 2334444332 13333 44444 32 469999874 333 33
Q ss_pred Eecc-------cCCceEEEEEc--C-CCC-EEEEEeCCCcEEEEECC---CC----ceeEEeccCCCceEEEEEcCCCCE
Q 005096 265 SLTG-------HGWDVKSVDWH--P-TKS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 265 ~l~~-------~~~~I~si~~s--p-dg~-~L~sgs~Dg~I~iwDl~---s~----~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
.+.. ....+..+|+. + ++. ++++...+|.+..|.+. .+ +.+++|.. ...+..|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3221 22346677764 3 344 66677889988887664 33 34667763 457888888888889
Q ss_pred EEEEECCCeEEEEECCC-----CeEEEEeec--CCCCeEEEEEcc--CCC-CEEEEEeCCCcEEEEEcCCCC
Q 005096 327 VLTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHP--FHE-EYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t-----~~~~~~~~~--h~~~V~~l~~sp--~~~-~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|+++-++.-|+-|+.+- .+.+....+ ....|-.|++-. ++. .+|++.-.+++..||+.....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 99999999898888862 223333322 346788887753 222 355555567889999987543
No 469
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.36 E-value=2.1 Score=46.86 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=8.0
Q ss_pred cEEEEECCCCc
Q 005096 293 LVKLWDAKSGR 303 (715)
Q Consensus 293 ~I~iwDl~s~~ 303 (715)
.|.+||..+.+
T Consensus 190 ~v~~YD~~t~~ 200 (376)
T PRK14131 190 EVLSYDPSTNQ 200 (376)
T ss_pred eEEEEECCCCe
Confidence 47888987654
No 470
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.30 E-value=3 Score=47.25 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=60.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc---eEEEEEcCCCCEEEEEEC-------------CCeEEEE
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---VLCVKWNQNGNWVLTASK-------------DQIIKLY 339 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~---I~sl~~spdg~~Lasgs~-------------dg~I~iw 339 (715)
+...++|.+++... ..++.+|+. |+.+..+...... =..+...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66677888776555 788899986 6666655432211 245677889999888772 1246666
Q ss_pred ECCCCeEEEEeec--C----C---------------------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 340 DIRAMKELESFRG--H----R---------------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 340 Dl~t~~~~~~~~~--h----~---------------------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
| .+|+.+..+.. | . -.++++.+.+.++.+|+++-.-..|...|.++++..
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 7 77777666431 1 0 137889998866666666655557877776665443
No 471
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.29 E-value=0.062 Score=39.69 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=28.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNG 173 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~ 173 (715)
...|.+++|+|+.++||.++.+|.|.|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
No 472
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.29 E-value=4.6 Score=43.57 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=25.3
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeeEEEecccCCceE--EEEEcCCCCEEEEEeCC
Q 005096 239 TDLKFCSCSDD-----------TTVKVWDFARCQEERSLTGHGWDVK--SVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 239 d~~~Las~s~D-----------g~V~iwdl~~~~~~~~l~~~~~~I~--si~~spdg~~L~sgs~D 291 (715)
++++.+.|+.+ ..+..||..+.+-...-........ +.+..-++++.++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666666642 2477788766443222111111111 11112357777777754
No 473
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.19 E-value=0.56 Score=54.50 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCEEEEEECCCcEEEEECCC-------C----e---------eEEEecccCCceEEEEEc--CCCCEEEEEeCCCcEEE
Q 005096 239 TDLKFCSCSDDTTVKVWDFAR-------C----Q---------EERSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 239 d~~~Las~s~Dg~V~iwdl~~-------~----~---------~~~~l~~~~~~I~si~~s--pdg~~L~sgs~Dg~I~i 296 (715)
+...|++|.+||.|.+|.+++ . + ....+ .....++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 456788888888888886521 0 0 01111 234578899998 77788888888888888
Q ss_pred EECCC--CceeE-EeccCCCceEEEEEcCCC---C---EEEEEECCCeEEEEEC
Q 005096 297 WDAKS--GRELC-SFHGHKNMVLCVKWNQNG---N---WVLTASKDQIIKLYDI 341 (715)
Q Consensus 297 wDl~s--~~~~~-~~~~~~~~I~sl~~spdg---~---~Lasgs~dg~I~iwDl 341 (715)
|-+.. .+... .-..+...|-+|+|.++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75443 11111 111255678999997743 2 7888999999999888
No 474
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=5 Score=48.07 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=35.4
Q ss_pred EEcCCCCEEEEEeC---------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC
Q 005096 151 LWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (715)
Q Consensus 151 ~~spdg~~Latgs~---------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~ 206 (715)
.+++|.++++++.. .+...+|++.++..........+.+.++.|++.++.|+..-.
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence 66777777666644 345677777776622222223455789999999977765543
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.19 E-value=3.1 Score=43.69 Aligned_cols=185 Identities=10% Similarity=0.119 Sum_probs=100.8
Q ss_pred cEEEEEEcCCCCEEE--EEeC----------CCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCC-----CEEE
Q 005096 146 SINRVLWTPTGRRLI--TGSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHND-----NWMV 202 (715)
Q Consensus 146 ~I~~l~~spdg~~La--tgs~----------dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg-----~~L~ 202 (715)
.|..+....++++-+ +|.- .-+|.+||+.+.+.++++... .+.+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 366777777765433 2211 127999999999998887643 3457788876522 3444
Q ss_pred EEe-CCCcEEEEeCCCCceeeeecCC-------------------CCCeEEEEEec---CCCEEEEEECCC-cEEEEEC-
Q 005096 203 SGD-DGGAIKYWQNNMNNVKANKSAH-------------------KESVRDLSFCR---TDLKFCSCSDDT-TVKVWDF- 257 (715)
Q Consensus 203 tgs-~dg~I~iwd~~~~~~~~~~~~h-------------------~~~I~~l~~sp---d~~~Las~s~Dg-~V~iwdl- 257 (715)
.++ ..+.|.|+|+.+++..+.+..+ .+.+..++.++ +++.|+-..-.+ .++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 443 3468999999988766555321 12244555544 445555444332 2222221
Q ss_pred --CCCe---------eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEe--ccC-CCceEEEEE
Q 005096 258 --ARCQ---------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG---RELCSF--HGH-KNMVLCVKW 320 (715)
Q Consensus 258 --~~~~---------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~---~~~~~~--~~~-~~~I~sl~~ 320 (715)
.+.. .+..+-........++++++|.++++--..+.|..||.++. +....+ ... -.++..+++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence 1110 11122111235567888899998888889999999998861 112222 212 357788999
Q ss_pred cC--CCCEEEEE
Q 005096 321 NQ--NGNWVLTA 330 (715)
Q Consensus 321 sp--dg~~Lasg 330 (715)
.. ++.+.+.+
T Consensus 242 ~~~~~g~L~v~s 253 (287)
T PF03022_consen 242 DPEGDGYLWVLS 253 (287)
T ss_dssp -T--TS-EEEEE
T ss_pred ccccCceEEEEE
Confidence 88 66655444
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.12 E-value=6.1 Score=42.89 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEc----CCCCE--E-EEEeCC---CcEEEEeCCC--Cceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS----HNDNW--M-VSGDDG---GAIKYWQNNM--NNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~--L-~tgs~d---g~I~iwd~~~--~~~~~ 222 (715)
...+|+....++-+.+||++-. .+..+. .+.++.+..- -+++. | +++.++ ..|++|.+.. +.+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4567888888889999998754 444443 2344444332 13432 3 333333 4699997753 33322
Q ss_pred ee------cCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEECC---CC----eeEEEecccCCceEEEEEcCCCCEE
Q 005096 223 NK------SAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 223 ~~------~~h~~~I~~l~~sp---d~~-~Las~s~Dg~V~iwdl~---~~----~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
.. ......+..+|+.. ++. ++++...+|.+..|.+. ++ +.++.|.. ...+..|..+....+|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 11 11223467777743 344 56667889998888773 22 34666663 4578899999888899
Q ss_pred EEEeCCCcEEEEECCC--C---ceeEEec--cCCCceEEEEEcC--CC-CEEEEEE-CCCeEEEEECCC-CeEEEEee
Q 005096 286 VSGGKDSLVKLWDAKS--G---RELCSFH--GHKNMVLCVKWNQ--NG-NWVLTAS-KDQIIKLYDIRA-MKELESFR 351 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s--~---~~~~~~~--~~~~~I~sl~~sp--dg-~~Lasgs-~dg~I~iwDl~t-~~~~~~~~ 351 (715)
+++-+|.-|.-|+.+- + +.+.... .....|..|++-. ++ .||++++ .+++..|||.+. ...+..|.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 9999998888888762 1 2222222 2345677777743 33 3666555 567899999874 34444443
No 477
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.08 E-value=1.8 Score=51.26 Aligned_cols=95 Identities=12% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
-.-.|..|.++++|++|+..+..| |.|..+-. +.....+..-...|.|-.+.=+..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc--------------------
Confidence 345799999999999999998877 44444321 11111222222223332222111111
Q ss_pred eeecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCC
Q 005096 222 ANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.......|..+.|+|. +..|++-+.|++||+||+...
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123445677788775 578888888999999998643
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.06 E-value=5.9 Score=42.46 Aligned_cols=142 Identities=10% Similarity=0.172 Sum_probs=82.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCc------EEEEeCCCC-----cee----eeecCCC--------CCeEEEEEecCCCEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGA------IKYWQNNMN-----NVK----ANKSAHK--------ESVRDLSFCRTDLKF 243 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~------I~iwd~~~~-----~~~----~~~~~h~--------~~I~~l~~spd~~~L 243 (715)
+.++.|.+.+++..+++.+++|. +..+++... ... ..+.... ....+|++..++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55677888755555555566666 554444331 000 0111111 144578887788777
Q ss_pred EEEECC------CcEEEEECCCCeeEEEec---------------ccCCceEEEEEcCCCCEEEEEeCC-----C--c--
Q 005096 244 CSCSDD------TTVKVWDFARCQEERSLT---------------GHGWDVKSVDWHPTKSLLVSGGKD-----S--L-- 293 (715)
Q Consensus 244 as~s~D------g~V~iwdl~~~~~~~~l~---------------~~~~~I~si~~spdg~~L~sgs~D-----g--~-- 293 (715)
++.-.+ ..|+.+|.. ++.+..+. ..+..+.+|++++|++.|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 778888865 44433331 134568899999999977766432 2 1
Q ss_pred -----EEEE--ECCC-CceeE----Eecc-----CCCceEEEEEcCCCCEEEE
Q 005096 294 -----VKLW--DAKS-GRELC----SFHG-----HKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 294 -----I~iw--Dl~s-~~~~~----~~~~-----~~~~I~sl~~spdg~~Las 329 (715)
++|+ |..+ ++... .+.. ....|+.+.+.+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4454 5544 22222 2222 3567889999999886664
No 479
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.05 E-value=0.21 Score=51.57 Aligned_cols=10 Identities=50% Similarity=1.169 Sum_probs=6.2
Q ss_pred CCCCCCCCCC
Q 005096 580 PHISRPPPQM 589 (715)
Q Consensus 580 ~~~~~~~~~~ 589 (715)
|||+-++|.+
T Consensus 299 phl~gppPga 308 (498)
T KOG4849|consen 299 PHLMGPPPGA 308 (498)
T ss_pred cccCCCCCCC
Confidence 6776666554
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.03 E-value=2.8 Score=48.45 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=86.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--eec-CCCC------CeEEEEEecCCCEEEEEEC-C---CcE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKS-AHKE------SVRDLSFCRTDLKFCSCSD-D---TTV 252 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~--~~~-~h~~------~I~~l~~spd~~~Las~s~-D---g~V 252 (715)
++.|..|.|..+++.+++...+|.|.+||...+.... .+. .+.. -|..........++++.+. + -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6788999999999999999999999999993332211 111 1111 1222221112344444443 2 246
Q ss_pred EEEEC-CCCeeEEEec---ccCCce--EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----C-CceEEEEE
Q 005096 253 KVWDF-ARCQEERSLT---GHGWDV--KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----K-NMVLCVKW 320 (715)
Q Consensus 253 ~iwdl-~~~~~~~~l~---~~~~~I--~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-----~-~~I~sl~~ 320 (715)
+++.+ .+...+..+. .+.... ..+++. +|.+... .+++|.+|++-+-+...++.-. . ..+.++.-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 67776 1112222221 122222 233333 4543333 6789999999776655544311 1 23444432
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
+..++++.+. ++.|++.|+.-...+.++.
T Consensus 286 -~s~nRvLLs~-~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 -PSPNRVLLSV-NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -CCCCeEEEEc-CCEEEEEeehhhhhhhhhh
Confidence 2333444443 6789999997665555554
No 481
>PLN02193 nitrile-specifier protein
Probab=95.01 E-value=3.8 Score=46.37 Aligned_cols=187 Identities=9% Similarity=-0.036 Sum_probs=88.0
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCceeeeecC--CCC--CeEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 005096 197 NDNWMVSGDDG-------GAIKYWQNNMNNVKANKSA--HKE--SVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARC 260 (715)
Q Consensus 197 dg~~L~tgs~d-------g~I~iwd~~~~~~~~~~~~--h~~--~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~ 260 (715)
++.+++.|+.+ ..+.+||+++.+-...... ... ........-++++++.|+.+ +.+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2466778776543321110 011 11111122245566666654 45888998765
Q ss_pred eeEEEecc----cCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEec-----cCCCceEEEEEcCCCCE
Q 005096 261 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 261 ~~~~~l~~----~~~~I~si~~spdg~~L~sgs~Dg-----~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~~ 326 (715)
+-...-.. ....-.+++.. ++++++.|+.++ .+..||+.+.+-...-. ........+.+ ++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gki 331 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKV 331 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcE
Confidence 43221110 11111222222 456677776543 46778887654221100 01111112222 5667
Q ss_pred EEEEECC----CeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEEEEEeCC--------------CcEEEEEc
Q 005096 327 VLTASKD----QIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYFVSGSLD--------------GSIFHWLV 384 (715)
Q Consensus 327 Lasgs~d----g~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l~sgs~D--------------G~I~iwd~ 384 (715)
++.++.+ ..|.+||+.+.+-...-.. ......+++.. ++++++.|+.+ ..+.+||.
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 7776654 4689999987654322111 11112222222 66777777753 14677777
Q ss_pred CCCC
Q 005096 385 GHET 388 (715)
Q Consensus 385 ~~~~ 388 (715)
.+..
T Consensus 410 ~t~~ 413 (470)
T PLN02193 410 ETLQ 413 (470)
T ss_pred CcCE
Confidence 6553
No 482
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=94.93 E-value=13 Score=45.61 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=83.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEE----E--EeccCCCEEEEEEcCCCCEEEEEeCCCcE---EEEeCCCCc-
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEM----I--LQAHDHAIRSMVWSHNDNWMVSGDDGGAI---KYWQNNMNN- 219 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~----~--l~~h~~~V~~l~~spdg~~L~tgs~dg~I---~iwd~~~~~- 219 (715)
-.+-++...+++.+.+|.|+-.+.++.+... . +.. ++.+..+.-....++|+.-+..|.+ .+|++....
T Consensus 510 edlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke-~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~ 588 (957)
T PRK13979 510 EELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYRE-GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKW 588 (957)
T ss_pred hHcCCCcceEEEEecCCEEEEccccccccccccccccccCC-CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCc
Confidence 3456677889999999999988765432111 1 122 2444444444444555555556765 455554432
Q ss_pred -----eeeeec---C-CCCCeEEE-EEe--cCCCEEEEEECCCcEEEEECCCCe------eEEEecccCCceEEEEEcCC
Q 005096 220 -----VKANKS---A-HKESVRDL-SFC--RTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 220 -----~~~~~~---~-h~~~I~~l-~~s--pd~~~Las~s~Dg~V~iwdl~~~~------~~~~l~~~~~~I~si~~spd 281 (715)
.+..+. . ....|..+ .+. .++.+|+.++.+|.|+...++... ....+. ..+.+.++.+...
T Consensus 589 ~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~-e~DeLV~v~~~~~ 667 (957)
T PRK13979 589 KEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLK-KGEKLIKVKLVDR 667 (957)
T ss_pred CCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcC-CCCEEEEEEEcCC
Confidence 122221 1 23444443 332 244678999999999998874322 122233 2445555555543
Q ss_pred C---CEEEEEeCCCcEEEEECC
Q 005096 282 K---SLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 282 g---~~L~sgs~Dg~I~iwDl~ 300 (715)
+ ..++..+.+|.+..|+.+
T Consensus 668 ~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 668 TREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CCCCCEEEEEeCCCcEEEEEHH
Confidence 2 467888888888888764
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.86 E-value=0.56 Score=53.34 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...+..+++|.-+|.+..++.++.||.|++|+.......++... ...-..+.|...| |++...|..+.-|.
T Consensus 11 ~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 11 PKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEeccchhheee
Confidence 34455678888889999999999999999999765444332221 1222344554333 55555666666664
No 484
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.86 E-value=0.14 Score=58.28 Aligned_cols=6 Identities=67% Similarity=1.381 Sum_probs=3.3
Q ss_pred CCCCCC
Q 005096 651 GGFPNG 656 (715)
Q Consensus 651 ~~~~~~ 656 (715)
|||++|
T Consensus 589 ~g~~Gg 594 (1102)
T KOG1924|consen 589 GGFLGG 594 (1102)
T ss_pred CCCCCC
Confidence 555554
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.85 E-value=0.0045 Score=66.77 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=101.3
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEecc
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
....|.+++..++.++.+..|..||-.. +....+. ..+...+++|+-++..+ +.+-..+.+++||+++...-..-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3455667776788888888999999533 3333332 34456678888877644 4556678999999986432111111
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 311 ~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
.+..-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|.. +++.+.++.|..+.+-
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVT 185 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHHHHHh
Confidence 122222378998888899999999999999988887777767999999999986 5566666666555443
No 486
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=2.2 Score=52.08 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=86.3
Q ss_pred eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEeCCCC----ce-----eeeec
Q 005096 163 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--------NDNWMVSGDDGGAIKYWQNNMN----NV-----KANKS 225 (715)
Q Consensus 163 s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp--------dg~~L~tgs~dg~I~iwd~~~~----~~-----~~~~~ 225 (715)
+.|+.+.+|+.+++.....+.+.+..|..|.+-. .=++|++-..--.|.|+-+... .. ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 3467899999999888888888777777776532 2234444444455666533211 11 11222
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CC------Cee--------------EEEec-ccCCceEEEEEcC
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR------CQE--------------ERSLT-GHGWDVKSVDWHP 280 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl----~~------~~~--------------~~~l~-~~~~~I~si~~sp 280 (715)
.....|+|+....+|+.|++|- || .||.+ .+ +.. +..+. .+.+.|..|+++.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 3356788888777777666554 55 44443 11 111 01122 4567899999998
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s 301 (715)
..+++.+-++.++|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999976
No 487
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.71 E-value=0.0066 Score=65.52 Aligned_cols=135 Identities=12% Similarity=0.217 Sum_probs=93.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
...|-+++.-|+.++.+..|..||-... ....+ ...+....++|..++..+ +.+-..+.+.|||+++......-.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3456666666888888888888985432 22222 234556678888877655 45667799999998875332222222
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
...-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|...+..+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 2222337888888888999899999999988776666666688899999998876543
No 488
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.70 E-value=0.98 Score=52.57 Aligned_cols=113 Identities=8% Similarity=0.041 Sum_probs=74.4
Q ss_pred ceEEEEEcC--CCCEEEEEECCCeEEEEECCC-------C----e---------EEEEeecCCCCeEEEEEc--cCCCCE
Q 005096 314 MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRA-------M----K---------ELESFRGHRKDVTALAWH--PFHEEY 369 (715)
Q Consensus 314 ~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t-------~----~---------~~~~~~~h~~~V~~l~~s--p~~~~~ 369 (715)
.|+.+.... +...|+++..||.|.+|.+++ . + ....+. ....+++|+++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 355555443 557889999999999997632 1 0 011111 33467888887 5 6778
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEE--eeccCCCEEEEEEcCCC---C---EEEEEECCCeEEEEecC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEI--HNVHDNTVWDLAWHPIG---Y---LLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spdg---~---~L~sgs~Dg~I~iWdl~ 428 (715)
||++++...|.||-+......... ...+...|-+|+|.++. . .|++++-.|.+.+|+++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888888888888866542111111 11255678899987653 2 78889999999999884
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=3.5 Score=50.78 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF 176 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~ 176 (715)
+-......++|++...++|.++.+|.|+++-...-
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccce
Confidence 33446778999999999999999999999976543
No 490
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.60 E-value=0.95 Score=52.20 Aligned_cols=112 Identities=14% Similarity=0.255 Sum_probs=72.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcC--CCCEEEEEECCCeEEEEECC-----
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIR----- 342 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~----- 342 (715)
....-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|.. |+..|++.+....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555545555555555679999999876444322 3467899999965 88888888889999988531
Q ss_pred ----CCeEEEEe--ecCC-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 343 ----AMKELESF--RGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 343 ----t~~~~~~~--~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+...++++ ..+. ..|.+..|.. ++.+++.+ ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECCC
Confidence 12233333 2333 6789999997 56555544 3478887653
No 491
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.59 E-value=0.11 Score=38.40 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
...|.+++|+|..++||.++.||.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
No 492
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.59 E-value=2 Score=42.55 Aligned_cols=138 Identities=7% Similarity=0.099 Sum_probs=78.5
Q ss_pred CEEEEEeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---C---cEEEE-eCCC----Cceee-
Q 005096 157 RRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G---AIKYW-QNNM----NNVKA- 222 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g---~I~iw-d~~~----~~~~~- 222 (715)
+.|+.+...++|.+|++.+ ......+.. -+.|..+.++..|+||+|--++ . .+++| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4566657778899999883 334444443 3789999999999999986432 2 56665 2211 11111
Q ss_pred eec---------------------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-E-----EEec----c--c
Q 005096 223 NKS---------------------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-E-----RSLT----G--H 269 (715)
Q Consensus 223 ~~~---------------------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~-----~~l~----~--~ 269 (715)
.+- .......+++.++....|++|+. +++.||.+..... . ..|. . .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 111 12345677888875555666654 4788887743322 1 1111 1 1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
+-....+++. ++++|..++ ..++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1224455665 566766654 55666654
No 493
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.58 E-value=0.87 Score=52.48 Aligned_cols=110 Identities=14% Similarity=0.235 Sum_probs=71.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECC------
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFA------ 258 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~s--pd~~~Las~s~Dg~V~iwdl~------ 258 (715)
...-+.-+.-++..++-+....+.|||...+.+..... ...+.|.++.|. +|+..+++.+..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444444554555555789999998876444332 457889999996 478888888889899988531
Q ss_pred ---CCeeEEEe--cccC-CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 259 ---RCQEERSL--TGHG-WDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 259 ---~~~~~~~l--~~~~-~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
+...++.+ ..+. ..|.+..|..+|.+++.++ +.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11122222 2233 5789999998887655443 56888864
No 494
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.54 E-value=2.2 Score=42.17 Aligned_cols=140 Identities=15% Similarity=0.226 Sum_probs=83.1
Q ss_pred CEEEEEeCCCcEEEEECCC--CceeEEeccCCCceEEEEEcCCCCEEEEEECCC------eEEEE-ECCCC----eEEE-
Q 005096 283 SLLVSGGKDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------IIKLY-DIRAM----KELE- 348 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s--~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg------~I~iw-Dl~t~----~~~~- 348 (715)
+.|+.+...+.|.+||+.. .+.+.+|. .-+.|..+.++..|+||++--.+. .+|+| +.+.. ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4454546678899999983 34455665 347899999999999999865332 55664 22211 1111
Q ss_pred Eeec---------------------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc------eEEE----eecc
Q 005096 349 SFRG---------------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEI----HNVH 397 (715)
Q Consensus 349 ~~~~---------------------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~------~~~~----~~~h 397 (715)
.+.+ -...+.+++..+..|++|+.+ ++.+.+|.+..... ...+ ...|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 234578889999788887754 55888887643322 0111 0111
Q ss_pred C-CCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 398 D-NTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 398 ~-~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
. -....+++. +.++|..+ |..++++++.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 1 224566665 55676665 6678887763
No 495
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=94.53 E-value=16 Score=44.83 Aligned_cols=113 Identities=10% Similarity=-0.052 Sum_probs=64.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeE---EEEeCCCCc------eEEEE----eccCCCEEE-EEEc--CCCCEEEEEeCCC
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEF---TLWNGQSFN------FEMIL----QAHDHAIRS-MVWS--HNDNWMVSGDDGG 208 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I---~Iwd~~~~~------~~~~l----~~h~~~V~~-l~~s--pdg~~L~tgs~dg 208 (715)
+.|..+.......+|+.-+..|.+ ++|++...+ .+..+ ...+..|.+ +.+. .++.+|+.++.+|
T Consensus 552 D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G 631 (957)
T PRK13979 552 DFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSG 631 (957)
T ss_pred CceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCC
Confidence 555566666666677777777765 455655432 11112 111334443 3442 2345788889999
Q ss_pred cEEEEeCCCCc------eeeeecCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECC
Q 005096 209 AIKYWQNNMNN------VKANKSAHKESVRDLSFCRTD---LKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 209 ~I~iwd~~~~~------~~~~~~~h~~~I~~l~~spd~---~~Las~s~Dg~V~iwdl~ 258 (715)
.|+...++... ....+. ..+.+.++.+..++ ..++..+.+|.+..|+.+
T Consensus 632 ~VKrt~L~ef~~~r~~~~aikL~-e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 632 GIKKTSLDKFVTNYTKLMALKLK-KGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred eEEEEehhhccccccceEEEEcC-CCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHH
Confidence 99988764321 111222 24455555555432 468888888888888764
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.42 Score=57.93 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=92.1
Q ss_pred eCCCcEEEEECCCCceeEEeccCCCceEEEEEc--------CCCCEEEEEECCCeEEEEECCCCeE---------EEEee
Q 005096 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE---------LESFR 351 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~s--------pdg~~Lasgs~dg~I~iwDl~t~~~---------~~~~~ 351 (715)
+.|+.|.+|+.+++.....+.+....|..|.+- +.=+++++.+.--.|.|+-+...+. ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457889999999988888888777777776542 3334555555555666664432111 12222
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC----------------------ceEEEeeccCCCEEEEEEcCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET----------------------PQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~----------------------~~~~~~~~h~~~V~~l~~spd 409 (715)
.....|+++.... +|++|++|- ||.|+-.-..... .+..+...+.++|..+.+...
T Consensus 176 ~dg~~V~~I~~t~-nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTE-NGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEecc-CCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 3456688888554 777777665 4444322111110 011122245778999999988
Q ss_pred CCEEEEEECCCeEEEEecCCCCCccc
Q 005096 410 GYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
..+|.+-+..|+|.+|++...+....
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred cceeeeeccCceEEEEEccCCCccce
Confidence 99999999999999999988665433
No 497
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=1.5 Score=47.60 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=67.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA- 343 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t- 343 (715)
..+.|.+|.|++|++.|++--.|++|.+++....+.. .+.+.....|...+|+.+ .-+|..+..| |.+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4568999999999999999999999999987432221 122334456899999866 4455555443 66665543
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
.+.++..+.++..|.-..|++ +.++
T Consensus 143 krslRlVks~~~nvnWy~yc~-et~v 167 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCP-ETAV 167 (657)
T ss_pred hhhhhhhhhcccCccEEEEcc-ccce
Confidence 344566677888888888888 4443
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=94.23 E-value=0.89 Score=50.66 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEEC-------CCCeeEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEE-E
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDF-------ARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW-D 298 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl-------~~~~~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw-D 298 (715)
.....+..+...+..+++. |..++||+. +++.....+ .+....+.+| +++....|.|+.| +
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~ 95 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWES 95 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEeccc
Q ss_pred CCCCceeEEec-----------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCC
Q 005096 299 AKSGRELCSFH-----------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 299 l~s~~~~~~~~-----------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~ 367 (715)
+.....+.+.. ..........-.-+..-++++..+|+|.....+....+.++......-.+-.+.....
T Consensus 96 I~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~ 175 (422)
T PF08801_consen 96 ISHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSS 175 (422)
T ss_dssp TT-TT--EEEE------------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT-------------
T ss_pred chhhhhcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccC
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccc
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 440 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~ 440 (715)
.++...... ....+..|..+++.+..++|++.+.+|.|.+|++...+.....+...
T Consensus 176 ~~~~~~~p~-----------------~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~~~~~~~~ 231 (422)
T PF08801_consen 176 SIFSSLLPS-----------------FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGSTLVSKVDI 231 (422)
T ss_dssp ---------------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEEEEEH
T ss_pred ceeccccCC-----------------cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCceeeehhH
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.22 E-value=8.8 Score=40.65 Aligned_cols=222 Identities=10% Similarity=0.011 Sum_probs=105.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCC--CceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCee-----------
Q 005096 197 NDNWMVSGDDGGAIKYWQNNM--NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE----------- 262 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~----------- 262 (715)
++++|+.|+++|...+. ++. .+... ..+...|+.+......+.|++-+. ...|+++|+.....
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~k--l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEK--LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEE--ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 33689999999866555 544 22332 235668999999987777666553 34499999843221
Q ss_pred -----EEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----ceeEEe---c-cCCCceEEEEEcC--CCCE
Q 005096 263 -----ERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG----RELCSF---H-GHKNMVLCVKWNQ--NGNW 326 (715)
Q Consensus 263 -----~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~----~~~~~~---~-~~~~~I~sl~~sp--dg~~ 326 (715)
...+ .+......+++.... ..++++.....|.++..... ..++.+ . .....+..+..+. +...
T Consensus 89 ~~~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 89 IRKNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred ccccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 1111 222222333333222 23344445566777644321 112110 0 1112233333333 2456
Q ss_pred EEEEECCCeEEEEECCC--CeEEE----E-eecCC-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC-CCceEEEeecc
Q 005096 327 VLTASKDQIIKLYDIRA--MKELE----S-FRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH-ETPQVEIHNVH 397 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t--~~~~~----~-~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~-~~~~~~~~~~h 397 (715)
|.+|+..+...++++.. ..... . ..... ..+..+.+. ++.+|++ -++ ...+.|... .......+ .-
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~--~~e~Llc-~~~-~~v~Vn~~G~~~~r~~~l-~w 242 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVP--RDEFLLC-YDE-FGVFVNLYGKRRSRNPIL-HW 242 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEEC--CCeEEEE-ECc-EEEEEeCCCCccccceEE-Ec
Confidence 77777653344455432 11000 0 01111 233333332 3444443 333 344444433 11111111 13
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 398 DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 398 ~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.....++++. ..+|+.-. +..|.||++...
T Consensus 243 ~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 243 EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 4456777776 35566555 556999999764
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=94.21 E-value=18 Score=44.20 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=84.5
Q ss_pred CEEEEEeC---------CCcEEEEECCC-----Cc-----eeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 283 SLLVSGGK---------DSLVKLWDAKS-----GR-----ELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 283 ~~L~sgs~---------Dg~I~iwDl~s-----~~-----~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
.+|++|.. -|.+.|||+-. ++ .++.+ +..++.|..++=. +|. |+++ ..-+|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~-l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGH-LLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccE-EEEc-cCcEEEEEEe
Confidence 36777643 37899998632 21 22222 2345667666532 454 4444 3568999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc--CCCEEEEEEcCCC--CEEEEEE
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH--DNTVWDLAWHPIG--YLLCSGS 417 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg--~~L~sgs 417 (715)
.....+.-..--+-.+....... -+++|+.|.--..|.+..+..+.....+.... .-.+.++.|--|| -.++++.
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~-vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKV-VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhh-hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 43333222111222222222222 35677777766777777766655544444322 2357788887775 4678888
Q ss_pred CCCeEEEEecCCCCCcc
Q 005096 418 NDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 418 ~Dg~I~iWdl~~~~~~~ 434 (715)
.|++|++|-...+..+.
T Consensus 1203 a~rNi~vy~Y~Pe~~eS 1219 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPENIES 1219 (1366)
T ss_pred CCCcEEEEEeCCCCccc
Confidence 99999999886554433
Done!