Query 005096
Match_columns 715
No_of_seqs 1169 out of 3456
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 15:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6.3E-45 2.2E-49 401.4 44.0 287 139-427 103-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 4.4E-44 1.5E-48 381.6 43.9 290 136-427 24-319 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 2.1E-43 7.2E-48 378.9 47.4 288 136-426 47-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 1.7E-42 6E-47 374.3 45.5 289 136-426 56-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 1.9E-42 6.6E-47 365.4 43.0 290 137-429 6-302 (304)
6 4ery_A WD repeat-containing pr 100.0 9.8E-42 3.3E-46 360.0 46.3 292 136-428 15-311 (312)
7 1nr0_A Actin interacting prote 100.0 2.9E-42 1E-46 399.9 45.5 363 61-431 55-569 (611)
8 3iz6_a 40S ribosomal protein R 100.0 6E-43 2.1E-47 381.4 36.5 294 136-430 58-376 (380)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-42 1.7E-46 369.1 42.7 295 137-432 8-338 (345)
10 3frx_A Guanine nucleotide-bind 100.0 1.5E-41 5.3E-46 361.2 44.5 291 135-429 8-317 (319)
11 4gqb_B Methylosome protein 50; 100.0 4E-42 1.4E-46 370.4 39.4 285 142-430 28-332 (344)
12 4g56_B MGC81050 protein; prote 100.0 3.3E-42 1.1E-46 372.6 36.7 290 141-433 39-347 (357)
13 2hes_X YDR267CP; beta-propelle 100.0 3.6E-41 1.2E-45 360.1 41.9 289 137-429 7-328 (330)
14 1erj_A Transcriptional repress 100.0 1.8E-40 6.1E-45 363.5 46.1 284 142-429 62-389 (393)
15 2xzm_R RACK1; ribosome, transl 100.0 2.7E-40 9.2E-45 354.9 43.0 289 136-429 13-340 (343)
16 1nr0_A Actin interacting prote 100.0 8.7E-41 3E-45 387.5 42.1 288 138-428 184-610 (611)
17 4aow_A Guanine nucleotide-bind 100.0 1.4E-39 4.8E-44 345.5 43.9 292 136-430 30-338 (340)
18 3ow8_A WD repeat-containing pr 100.0 5.4E-40 1.9E-44 350.0 40.0 291 62-384 29-319 (321)
19 3zwl_B Eukaryotic translation 100.0 4.9E-39 1.7E-43 344.2 45.5 291 135-429 23-346 (369)
20 2ymu_A WD-40 repeat protein; u 100.0 2.3E-39 7.8E-44 370.8 45.4 282 137-426 296-577 (577)
21 1vyh_C Platelet-activating fac 100.0 6E-40 2E-44 361.6 35.4 287 61-385 104-410 (410)
22 1sq9_A Antiviral protein SKI8; 100.0 1.8E-39 6.1E-44 353.1 38.7 290 136-429 8-395 (397)
23 1gxr_A ESG1, transducin-like e 100.0 1.6E-38 5.6E-43 336.1 43.1 282 140-427 47-335 (337)
24 1k8k_C P40, ARP2/3 complex 41 100.0 5.8E-39 2E-43 345.2 37.9 287 141-429 5-361 (372)
25 2ymu_A WD-40 repeat protein; u 100.0 7.7E-38 2.6E-42 358.1 49.4 311 137-463 255-565 (577)
26 3dm0_A Maltose-binding peripla 100.0 1.8E-38 6.1E-43 373.4 44.6 291 136-429 374-693 (694)
27 3k26_A Polycomb protein EED; W 100.0 3.7E-39 1.3E-43 345.2 35.4 288 138-428 12-365 (366)
28 1r5m_A SIR4-interacting protei 100.0 1.2E-38 3.9E-43 348.1 39.7 284 141-428 105-424 (425)
29 2pm9_A Protein WEB1, protein t 100.0 4.6E-40 1.6E-44 359.7 27.9 289 142-430 65-415 (416)
30 3i2n_A WD repeat-containing pr 100.0 7.7E-39 2.6E-43 341.9 36.2 295 135-430 9-354 (357)
31 3ei3_B DNA damage-binding prot 100.0 2.1E-38 7.2E-43 344.2 38.4 287 136-429 65-382 (383)
32 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-37 3.6E-42 326.6 42.1 286 135-432 9-299 (313)
33 1got_B GT-beta; complex (GTP-b 100.0 8.5E-38 2.9E-42 335.2 39.3 286 59-383 49-340 (340)
34 3vl1_A 26S proteasome regulato 100.0 1.1E-37 3.7E-42 342.0 38.0 283 145-429 98-419 (420)
35 2ynn_A Coatomer subunit beta'; 100.0 2.4E-37 8.3E-42 326.3 38.9 254 176-430 3-260 (304)
36 4gqb_B Methylosome protein 50; 100.0 1.3E-37 4.5E-42 335.1 36.9 245 142-388 80-333 (344)
37 1r5m_A SIR4-interacting protei 100.0 1.4E-37 4.8E-42 339.5 37.4 286 141-431 42-363 (425)
38 3vl1_A 26S proteasome regulato 100.0 6E-38 2E-42 344.1 33.2 285 146-432 58-368 (420)
39 3dwl_C Actin-related protein 2 100.0 2.1E-39 7.2E-44 350.7 20.9 284 141-427 8-377 (377)
40 1pgu_A Actin interacting prote 100.0 1.8E-36 6.3E-41 348.2 44.8 344 82-429 78-614 (615)
41 3frx_A Guanine nucleotide-bind 100.0 1E-36 3.4E-41 324.0 38.8 291 61-386 13-317 (319)
42 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-36 9.9E-41 334.8 44.2 279 139-430 154-443 (445)
43 3gre_A Serine/threonine-protei 100.0 1.6E-37 5.5E-42 343.4 33.0 290 134-426 53-437 (437)
44 4e54_B DNA damage-binding prot 100.0 7.8E-38 2.7E-42 347.1 30.4 289 139-430 114-431 (435)
45 1gxr_A ESG1, transducin-like e 100.0 1.3E-36 4.6E-41 321.4 38.0 284 143-431 8-298 (337)
46 2pbi_B Guanine nucleotide-bind 100.0 1.1E-36 3.8E-41 328.8 37.5 286 60-383 59-354 (354)
47 2pm9_A Protein WEB1, protein t 100.0 5.3E-38 1.8E-42 343.4 27.1 289 143-433 11-341 (416)
48 4aez_A CDC20, WD repeat-contai 100.0 2E-36 6.9E-41 331.7 39.3 288 139-432 86-383 (401)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-36 4.6E-41 326.7 37.1 281 82-391 28-340 (345)
50 4g56_B MGC81050 protein; prote 100.0 5.9E-37 2E-41 331.4 33.6 250 141-392 91-349 (357)
51 3v7d_B Cell division control p 100.0 8.1E-36 2.8E-40 332.3 43.2 285 137-432 114-424 (464)
52 2xzm_R RACK1; ribosome, transl 100.0 3E-36 1E-40 323.4 37.8 297 61-386 17-340 (343)
53 4gga_A P55CDC, cell division c 100.0 4.1E-35 1.4E-39 323.5 46.0 283 143-432 104-398 (420)
54 4ery_A WD repeat-containing pr 100.0 1.3E-35 4.4E-40 313.0 40.0 287 61-385 19-311 (312)
55 3v7d_B Cell division control p 100.0 1.5E-35 5.2E-40 330.1 42.7 281 139-428 157-462 (464)
56 2hes_X YDR267CP; beta-propelle 100.0 3.9E-36 1.3E-40 321.1 35.9 273 84-386 26-328 (330)
57 1p22_A F-BOX/WD-repeat protein 100.0 4.7E-36 1.6E-40 332.5 37.1 278 140-432 129-417 (435)
58 3dw8_B Serine/threonine-protei 100.0 2.7E-36 9.3E-41 333.4 34.7 282 142-427 26-444 (447)
59 1erj_A Transcriptional repress 100.0 9.1E-36 3.1E-40 326.1 38.3 245 141-386 120-389 (393)
60 4a11_B DNA excision repair pro 100.0 1.7E-35 5.7E-40 321.6 39.6 293 139-433 38-369 (408)
61 3iz6_a 40S ribosomal protein R 100.0 5.3E-37 1.8E-41 334.3 27.4 291 60-388 61-377 (380)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-35 1.6E-39 325.0 43.1 279 138-431 112-393 (445)
63 2pm7_B Protein transport prote 100.0 1.3E-35 4.4E-40 312.0 36.5 252 180-431 3-287 (297)
64 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-35 3.8E-40 354.3 40.5 292 137-430 6-303 (814)
65 2pm7_B Protein transport prote 100.0 1.4E-35 4.7E-40 311.8 36.1 248 139-387 4-286 (297)
66 1yfq_A Cell cycle arrest prote 100.0 1.5E-35 5.2E-40 315.0 35.5 280 139-427 6-322 (342)
67 4h5i_A Guanine nucleotide-exch 100.0 5.5E-36 1.9E-40 324.9 32.5 281 144-429 14-343 (365)
68 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-35 6.4E-40 369.2 41.9 291 139-430 610-1035(1249)
69 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-35 1.3E-39 366.5 42.1 332 62-431 612-1118(1249)
70 4ggc_A P55CDC, cell division c 100.0 2.8E-34 9.5E-39 301.7 41.6 276 147-429 28-315 (318)
71 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-35 5.7E-40 312.8 32.4 293 138-432 5-340 (351)
72 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-36 8.2E-41 342.9 27.2 285 139-429 202-517 (524)
73 3bg1_A Protein SEC13 homolog; 100.0 7.8E-36 2.7E-40 316.7 28.3 252 135-387 4-294 (316)
74 1sq9_A Antiviral protein SKI8; 100.0 2.8E-35 9.5E-40 320.0 32.7 292 61-387 12-396 (397)
75 3dm0_A Maltose-binding peripla 100.0 7.2E-35 2.4E-39 342.7 38.7 291 61-385 378-692 (694)
76 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-34 3.9E-39 350.1 40.5 284 142-430 56-606 (902)
77 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-34 5E-39 344.7 40.1 331 61-429 9-386 (814)
78 4aow_A Guanine nucleotide-bind 100.0 7.5E-34 2.6E-38 301.3 40.2 294 61-388 34-339 (340)
79 1pgu_A Actin interacting prote 100.0 2.9E-34 1E-38 329.8 39.3 283 141-429 15-328 (615)
80 3bg1_A Protein SEC13 homolog; 100.0 2.5E-35 8.4E-40 312.9 26.6 251 181-431 8-295 (316)
81 3mmy_A MRNA export factor; mRN 100.0 2.9E-34 9.8E-39 307.0 34.7 285 138-428 33-345 (368)
82 3k26_A Polycomb protein EED; W 100.0 7.8E-35 2.7E-39 311.5 30.1 242 141-385 66-365 (366)
83 4aez_A CDC20, WD repeat-contai 100.0 1.1E-33 3.7E-38 310.0 38.7 260 142-405 132-399 (401)
84 3zwl_B Eukaryotic translation 100.0 1.8E-33 6.3E-38 300.8 39.6 288 61-388 28-348 (369)
85 3jrp_A Fusion protein of prote 100.0 5.3E-34 1.8E-38 306.6 34.8 252 138-390 5-291 (379)
86 2aq5_A Coronin-1A; WD40 repeat 100.0 8.6E-35 2.9E-39 318.5 28.1 281 146-429 36-342 (402)
87 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-34 1.5E-38 345.1 36.4 241 139-383 12-309 (902)
88 3jrp_A Fusion protein of prote 100.0 4.7E-34 1.6E-38 307.0 31.8 255 177-431 2-289 (379)
89 1k8k_C P40, ARP2/3 complex 41 100.0 9.6E-34 3.3E-38 304.4 32.5 275 83-388 21-363 (372)
90 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-33 1.5E-37 310.2 36.4 284 145-432 5-394 (450)
91 4gga_A P55CDC, cell division c 100.0 6.6E-33 2.3E-37 305.8 37.3 248 139-390 142-399 (420)
92 3i2n_A WD repeat-containing pr 100.0 2.7E-33 9.2E-38 298.8 32.2 245 142-388 63-355 (357)
93 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-32 3.7E-37 288.5 35.7 284 60-391 13-301 (313)
94 3ei3_B DNA damage-binding prot 100.0 5.5E-33 1.9E-37 301.5 32.8 267 83-386 87-382 (383)
95 3dwl_C Actin-related protein 2 100.0 3.9E-34 1.3E-38 309.3 23.0 271 82-384 23-377 (377)
96 3vu4_A KMHSV2; beta-propeller 100.0 9.2E-33 3.2E-37 298.2 31.8 284 139-435 14-342 (355)
97 2xyi_A Probable histone-bindin 100.0 2.2E-32 7.6E-37 302.8 35.0 250 180-429 122-410 (430)
98 4a11_B DNA excision repair pro 100.0 5.1E-32 1.8E-36 294.1 35.0 340 61-429 39-405 (408)
99 3gre_A Serine/threonine-protei 100.0 2E-33 6.9E-38 310.5 24.0 271 152-431 35-361 (437)
100 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-32 8.2E-37 302.6 32.3 239 139-390 168-418 (435)
101 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-33 1.4E-37 316.3 23.9 255 157-413 174-458 (524)
102 4ggc_A P55CDC, cell division c 100.0 5.3E-31 1.8E-35 276.6 37.9 245 139-387 62-316 (318)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 9.2E-32 3.1E-36 294.4 31.8 246 139-387 76-343 (402)
104 3jro_A Fusion protein of prote 100.0 1.3E-32 4.6E-37 326.5 26.7 251 138-389 3-288 (753)
105 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-32 7.7E-37 293.0 25.6 266 151-428 43-332 (343)
106 4e54_B DNA damage-binding prot 100.0 3.3E-32 1.1E-36 301.8 26.0 247 139-388 159-432 (435)
107 3dw8_B Serine/threonine-protei 100.0 1.1E-31 3.7E-36 296.4 30.0 244 185-431 27-375 (447)
108 2xyi_A Probable histone-bindin 100.0 1.8E-31 6E-36 295.6 31.1 253 134-386 118-410 (430)
109 3bws_A Protein LP49; two-domai 100.0 1.4E-30 4.6E-35 286.9 37.8 279 145-429 123-432 (433)
110 2j04_A TAU60, YPL007P, hypothe 100.0 3.5E-32 1.2E-36 303.6 25.1 265 139-428 10-296 (588)
111 4h5i_A Guanine nucleotide-exch 100.0 1.5E-31 5.1E-36 290.0 29.5 246 138-388 67-345 (365)
112 1yfq_A Cell cycle arrest prote 100.0 7.7E-31 2.6E-35 278.6 31.5 280 63-384 9-322 (342)
113 3jro_A Fusion protein of prote 100.0 3.9E-31 1.3E-35 313.9 28.0 254 179-432 2-288 (753)
114 3f3f_A Nucleoporin SEH1; struc 100.0 2E-30 6.8E-35 273.7 29.2 300 59-392 5-343 (351)
115 4gq1_A NUP37; propeller, trans 100.0 6.8E-31 2.3E-35 287.6 25.7 230 196-427 99-387 (393)
116 1l0q_A Surface layer protein; 100.0 5.9E-29 2E-33 269.9 40.8 266 157-430 3-276 (391)
117 1l0q_A Surface layer protein; 100.0 8.2E-29 2.8E-33 268.8 40.6 280 145-430 32-343 (391)
118 3mmy_A MRNA export factor; mRN 100.0 4E-29 1.4E-33 266.9 34.3 282 170-463 23-331 (368)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.4E-29 2.2E-33 276.4 34.6 246 140-388 98-393 (450)
120 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-29 4.5E-34 282.9 25.9 258 139-417 47-349 (588)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-28 3.8E-33 266.2 30.3 250 170-432 3-274 (355)
122 4gq1_A NUP37; propeller, trans 100.0 1.5E-29 5E-34 277.0 21.4 243 140-384 85-387 (393)
123 2w18_A PALB2, fancn, partner a 100.0 4.4E-28 1.5E-32 255.3 30.3 273 147-427 42-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 100.0 6.7E-29 2.3E-33 266.0 23.3 232 194-432 44-295 (343)
125 3bws_A Protein LP49; two-domai 100.0 3.9E-27 1.3E-31 259.2 36.1 282 143-429 59-390 (433)
126 2w18_A PALB2, fancn, partner a 100.0 1.1E-26 3.7E-31 244.8 29.0 217 141-384 108-355 (356)
127 1nir_A Nitrite reductase; hemo 100.0 8.9E-26 3E-30 257.5 37.9 281 147-431 181-516 (543)
128 2ecf_A Dipeptidyl peptidase IV 100.0 4.7E-26 1.6E-30 269.0 34.0 284 144-432 36-416 (741)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.1E-26 2.1E-30 250.3 32.7 247 156-411 143-410 (415)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-26 1E-30 252.7 27.3 277 144-428 62-386 (415)
131 1nir_A Nitrite reductase; hemo 99.9 3.9E-25 1.3E-29 252.2 33.7 279 151-433 144-462 (543)
132 3vgz_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 228.3 37.0 272 144-420 40-335 (353)
133 3u4y_A Uncharacterized protein 99.9 6.5E-24 2.2E-28 224.7 35.4 276 150-429 3-304 (331)
134 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-25 8.3E-30 261.9 26.1 283 146-431 18-395 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.9 9.8E-25 3.4E-29 256.3 31.1 280 144-430 81-436 (706)
136 2ecf_A Dipeptidyl peptidase IV 99.9 6.4E-25 2.2E-29 259.2 29.4 279 145-428 109-458 (741)
137 1ri6_A Putative isomerase YBHE 99.9 3.4E-24 1.2E-28 226.9 31.3 269 159-431 8-310 (343)
138 2ojh_A Uncharacterized protein 99.9 2.9E-24 1E-28 221.4 26.2 254 162-420 18-293 (297)
139 1pby_B Quinohemoprotein amine 99.9 2.5E-23 8.4E-28 219.6 29.9 266 157-431 2-312 (337)
140 1ri6_A Putative isomerase YBHE 99.9 5.9E-23 2E-27 217.3 32.7 263 143-410 36-334 (343)
141 1xfd_A DIP, dipeptidyl aminope 99.9 7.8E-24 2.7E-28 249.0 27.7 270 146-418 62-429 (723)
142 2ojh_A Uncharacterized protein 99.9 1.8E-23 6.3E-28 215.3 25.2 231 142-376 39-292 (297)
143 3o4h_A Acylamino-acid-releasin 99.9 4.3E-23 1.5E-27 237.1 26.8 268 144-427 21-313 (582)
144 3u4y_A Uncharacterized protein 99.9 5.8E-22 2E-26 209.7 31.9 240 144-387 40-305 (331)
145 1k32_A Tricorn protease; prote 99.9 1.8E-22 6.2E-27 248.0 30.8 277 143-431 294-639 (1045)
146 1k32_A Tricorn protease; prote 99.9 1.2E-22 3.9E-27 249.7 28.9 279 139-428 198-501 (1045)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-22 5.9E-27 237.2 28.4 274 147-428 28-390 (706)
148 3hfq_A Uncharacterized protein 99.9 2E-21 6.8E-26 207.5 33.6 271 158-430 4-318 (347)
149 1pby_B Quinohemoprotein amine 99.9 2.5E-21 8.7E-26 204.1 29.0 241 146-394 35-318 (337)
150 3hfq_A Uncharacterized protein 99.9 1.2E-20 4.2E-25 201.3 34.0 242 143-386 38-317 (347)
151 1z68_A Fibroblast activation p 99.9 3.9E-22 1.3E-26 234.7 24.2 275 149-429 20-391 (719)
152 3scy_A Hypothetical bacterial 99.9 2.2E-20 7.5E-25 200.7 35.5 271 157-431 14-339 (361)
153 1jmx_B Amine dehydrogenase; ox 99.9 3.8E-21 1.3E-25 204.0 29.1 274 149-430 4-326 (349)
154 3vgz_A Uncharacterized protein 99.9 1.2E-20 4.1E-25 200.8 32.2 241 186-430 40-304 (353)
155 3scy_A Hypothetical bacterial 99.9 3.7E-20 1.3E-24 198.9 36.1 261 143-407 48-360 (361)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-21 5.7E-26 216.1 26.2 199 144-344 36-279 (434)
157 3pe7_A Oligogalacturonate lyas 99.9 2.8E-21 9.5E-26 209.1 25.3 288 139-430 25-383 (388)
158 1z68_A Fibroblast activation p 99.9 2.6E-22 8.9E-27 236.3 18.6 281 146-430 61-444 (719)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-21 1E-25 214.1 21.8 254 166-429 23-333 (434)
160 3azo_A Aminopeptidase; POP fam 99.9 1E-20 3.4E-25 220.4 25.8 287 139-429 18-367 (662)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.5E-19 5E-24 195.3 29.6 271 158-430 4-342 (365)
162 3c5m_A Oligogalacturonate lyas 99.8 3.6E-20 1.2E-24 200.3 20.2 282 145-433 36-386 (396)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-18 3.8E-23 188.3 29.7 244 143-387 38-342 (365)
164 4a5s_A Dipeptidyl peptidase 4 99.8 3.3E-19 1.1E-23 210.9 27.3 278 146-431 18-400 (740)
165 3o4h_A Acylamino-acid-releasin 99.8 7.3E-20 2.5E-24 210.1 21.0 232 186-427 21-274 (582)
166 2gop_A Trilobed protease; beta 99.8 4.4E-18 1.5E-22 181.2 29.5 258 145-428 15-330 (347)
167 4a5s_A Dipeptidyl peptidase 4 99.8 8.7E-19 3E-23 207.3 25.3 278 147-428 64-448 (740)
168 1jmx_B Amine dehydrogenase; ox 99.8 5.8E-18 2E-22 179.4 28.5 240 146-393 44-332 (349)
169 3fvz_A Peptidyl-glycine alpha- 99.8 1.7E-17 5.8E-22 176.5 30.5 241 144-386 23-322 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 7.3E-17 2.5E-21 167.2 34.2 240 141-387 26-281 (286)
171 2dg1_A DRP35, lactonase; beta 99.8 2.7E-17 9.1E-22 174.3 29.6 269 145-420 6-301 (333)
172 2z2n_A Virginiamycin B lyase; 99.8 1.5E-15 5.1E-20 157.2 42.1 284 136-429 6-295 (299)
173 1q7f_A NHL, brain tumor CG1071 99.8 2.4E-16 8.4E-21 163.2 33.2 238 185-429 28-280 (286)
174 3pe7_A Oligogalacturonate lyas 99.8 6.4E-17 2.2E-21 174.7 28.4 259 169-429 13-329 (388)
175 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-16 1.2E-20 166.5 33.5 241 186-429 23-322 (329)
176 2oiz_A Aromatic amine dehydrog 99.8 2.2E-16 7.5E-21 170.5 32.2 255 149-411 54-360 (361)
177 2oiz_A Aromatic amine dehydrog 99.8 8.7E-17 3E-21 173.6 28.8 267 155-430 14-335 (361)
178 2xdw_A Prolyl endopeptidase; a 99.8 1.7E-16 6E-21 186.6 33.7 274 154-431 81-416 (710)
179 3azo_A Aminopeptidase; POP fam 99.8 2E-17 6.7E-22 192.6 24.6 272 149-427 81-409 (662)
180 2bkl_A Prolyl endopeptidase; m 99.8 4.3E-17 1.5E-21 191.4 24.1 273 154-431 77-399 (695)
181 2xdw_A Prolyl endopeptidase; a 99.7 2E-16 7E-21 186.1 28.8 245 142-388 122-416 (710)
182 2gop_A Trilobed protease; beta 99.7 4.5E-16 1.6E-20 165.5 28.7 223 145-385 59-330 (347)
183 3e5z_A Putative gluconolactona 99.7 8.6E-16 2.9E-20 160.2 30.2 241 176-429 17-284 (296)
184 2qc5_A Streptogramin B lactona 99.7 3.1E-14 1E-18 147.3 39.7 279 139-427 14-298 (300)
185 3e5z_A Putative gluconolactona 99.7 8.5E-16 2.9E-20 160.2 27.9 237 142-387 25-287 (296)
186 1rwi_B Serine/threonine-protei 99.7 6.1E-16 2.1E-20 158.3 25.6 241 146-388 25-266 (270)
187 2dg1_A DRP35, lactonase; beta 99.7 9.6E-15 3.3E-19 154.5 35.2 234 139-376 39-300 (333)
188 3c5m_A Oligogalacturonate lyas 99.7 6.3E-17 2.1E-21 174.8 18.5 255 169-430 13-330 (396)
189 1qks_A Cytochrome CD1 nitrite 99.7 1.7E-14 5.8E-19 164.5 39.1 283 145-430 197-539 (567)
190 1rwi_B Serine/threonine-protei 99.7 1.4E-15 4.8E-20 155.6 26.7 240 188-430 25-265 (270)
191 3dsm_A Uncharacterized protein 99.7 4.5E-15 1.5E-19 157.9 30.5 256 164-428 15-301 (328)
192 1qks_A Cytochrome CD1 nitrite 99.7 4.3E-14 1.5E-18 161.2 36.6 275 154-430 165-478 (567)
193 3no2_A Uncharacterized protein 99.7 7.4E-15 2.5E-19 152.4 27.7 212 155-373 4-230 (276)
194 3dsm_A Uncharacterized protein 99.7 1.3E-14 4.4E-19 154.3 29.9 251 146-406 45-319 (328)
195 2bkl_A Prolyl endopeptidase; m 99.7 3E-16 1E-20 184.2 18.8 243 141-388 117-399 (695)
196 3no2_A Uncharacterized protein 99.7 1.6E-14 5.6E-19 149.8 26.7 233 197-436 4-258 (276)
197 2mad_H Methylamine dehydrogena 99.7 3.8E-13 1.3E-17 145.7 37.1 271 152-432 28-353 (373)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 7.3E-14 2.5E-18 146.0 29.9 239 144-387 17-300 (314)
199 1yr2_A Prolyl oligopeptidase; 99.7 1.5E-14 5.3E-19 170.9 27.7 272 154-430 116-442 (741)
200 2z2n_A Virginiamycin B lyase; 99.6 5.9E-13 2E-17 137.5 35.0 239 184-427 12-253 (299)
201 3sjl_D Methylamine dehydrogena 99.6 1.8E-13 6.1E-18 147.4 30.5 273 151-431 39-365 (386)
202 1yr2_A Prolyl oligopeptidase; 99.6 5E-14 1.7E-18 166.5 27.1 242 143-388 161-443 (741)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6E-13 2E-17 139.0 32.2 240 186-431 17-301 (314)
204 3g4e_A Regucalcin; six bladed 99.6 2.7E-12 9.2E-17 134.1 31.9 230 142-375 10-262 (297)
205 3c75_H MADH, methylamine dehyd 99.6 8E-13 2.7E-17 144.7 28.4 272 154-433 82-406 (426)
206 3hrp_A Uncharacterized protein 99.6 1.5E-12 5.2E-17 142.8 30.1 234 145-384 131-408 (409)
207 2qc5_A Streptogramin B lactona 99.6 1.4E-11 4.8E-16 127.1 34.9 237 185-427 18-258 (300)
208 3hrp_A Uncharacterized protein 99.5 5E-12 1.7E-16 138.6 31.7 234 187-427 131-408 (409)
209 2mad_H Methylamine dehydrogena 99.5 2.1E-11 7E-16 132.0 35.5 237 149-393 70-357 (373)
210 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-13 6.2E-18 147.9 17.6 172 146-330 39-231 (388)
211 3g4e_A Regucalcin; six bladed 99.5 2.5E-11 8.6E-16 126.7 33.2 231 182-418 8-261 (297)
212 2ghs_A AGR_C_1268P; regucalcin 99.5 1.7E-11 5.8E-16 130.0 32.3 223 146-376 50-293 (326)
213 3sjl_D Methylamine dehydrogena 99.5 1.6E-12 5.4E-17 140.0 23.9 253 150-409 83-384 (386)
214 3iuj_A Prolyl endopeptidase; h 99.5 1.1E-12 3.8E-17 153.8 24.7 240 185-430 127-406 (693)
215 3iuj_A Prolyl endopeptidase; h 99.5 1.3E-12 4.5E-17 153.1 25.3 241 142-388 126-407 (693)
216 2qe8_A Uncharacterized protein 99.5 5.2E-13 1.8E-17 142.7 19.1 265 145-426 17-318 (343)
217 2ghs_A AGR_C_1268P; regucalcin 99.5 7.5E-11 2.6E-15 125.0 34.2 222 188-419 50-292 (326)
218 3q7m_A Lipoprotein YFGL, BAMB; 99.5 3E-11 1E-15 130.2 31.3 263 156-430 53-338 (376)
219 3dr2_A Exported gluconolactona 99.5 8.9E-12 3.1E-16 130.6 26.3 224 143-377 43-298 (305)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.4 7.4E-11 2.5E-15 127.1 31.6 257 155-427 102-376 (376)
221 3dr2_A Exported gluconolactona 99.4 3.8E-11 1.3E-15 125.8 27.4 234 179-423 37-301 (305)
222 1kb0_A Quinohemoprotein alcoho 99.4 1.7E-11 5.8E-16 143.1 26.8 270 155-428 127-566 (677)
223 1xip_A Nucleoporin NUP159; bet 99.4 2.6E-12 8.9E-17 138.8 17.4 172 188-373 39-231 (388)
224 3c75_H MADH, methylamine dehyd 99.4 1.9E-11 6.4E-16 133.8 24.1 239 149-393 122-409 (426)
225 1yiq_A Quinohemoprotein alcoho 99.4 1.8E-11 6.1E-16 143.2 24.9 271 156-432 70-508 (689)
226 1kb0_A Quinohemoprotein alcoho 99.4 1.5E-11 5E-16 143.6 23.7 271 156-432 77-510 (677)
227 3hxj_A Pyrrolo-quinoline quino 99.4 2.6E-11 8.9E-16 127.4 21.1 267 144-430 59-325 (330)
228 1yiq_A Quinohemoprotein alcoho 99.4 6.6E-11 2.3E-15 138.3 25.8 257 155-415 120-534 (689)
229 1mda_H Methylamine dehydrogena 99.3 1.8E-11 6.2E-16 131.7 18.6 250 167-432 47-349 (368)
230 2hz6_A Endoplasmic reticulum t 99.3 3.6E-13 1.2E-17 145.7 5.0 258 155-428 8-278 (369)
231 2ece_A 462AA long hypothetical 99.3 1.8E-09 6.1E-14 117.2 29.7 221 196-417 93-399 (462)
232 1npe_A Nidogen, entactin; glyc 99.3 5.9E-09 2E-13 106.6 32.2 251 157-411 2-263 (267)
233 3hxj_A Pyrrolo-quinoline quino 99.3 7.2E-11 2.5E-15 124.0 16.7 258 150-427 25-282 (330)
234 2hz6_A Endoplasmic reticulum t 99.2 2.1E-12 7.3E-17 139.6 4.5 204 197-411 8-216 (369)
235 1mda_H Methylamine dehydrogena 99.2 1.1E-10 3.7E-15 125.7 17.2 244 149-407 69-365 (368)
236 2ece_A 462AA long hypothetical 99.2 9.3E-09 3.2E-13 111.6 32.1 219 154-374 93-399 (462)
237 1kv9_A Type II quinohemoprotei 99.2 5E-10 1.7E-14 130.5 23.5 271 156-432 66-491 (668)
238 2qe8_A Uncharacterized protein 99.2 2.5E-10 8.6E-15 121.7 19.3 227 142-383 64-318 (343)
239 1fwx_A Nitrous oxide reductase 99.1 1.3E-09 4.5E-14 122.1 19.6 266 159-428 18-430 (595)
240 1kv9_A Type II quinohemoprotei 99.1 1.1E-08 3.8E-13 119.1 27.8 258 156-417 117-520 (668)
241 2fp8_A Strictosidine synthase; 99.1 3.3E-08 1.1E-12 104.0 28.8 238 145-387 19-314 (322)
242 2iwa_A Glutamine cyclotransfer 99.1 5.2E-08 1.8E-12 99.4 27.1 194 145-344 21-238 (266)
243 4a2l_A BT_4663, two-component 99.1 3.6E-07 1.2E-11 108.5 38.8 275 144-429 214-526 (795)
244 2ad6_A Methanol dehydrogenase 99.1 2.8E-08 9.6E-13 113.4 27.9 255 156-414 115-522 (571)
245 1w6s_A Methanol dehydrogenase 99.1 2.3E-08 8E-13 114.4 27.1 250 158-412 123-529 (599)
246 2ad6_A Methanol dehydrogenase 99.1 1.4E-08 4.6E-13 116.1 25.2 269 156-431 62-496 (571)
247 1npe_A Nidogen, entactin; glyc 99.1 1.5E-07 5E-12 96.1 30.6 216 146-364 37-260 (267)
248 1w6s_A Methanol dehydrogenase 99.1 2.4E-08 8E-13 114.3 27.0 272 156-432 62-506 (599)
249 2iwa_A Glutamine cyclotransfer 99.1 2.5E-08 8.4E-13 101.9 23.5 204 178-387 11-238 (266)
250 4a2l_A BT_4663, two-component 99.0 7.4E-07 2.5E-11 105.9 39.5 273 144-429 262-571 (795)
251 1fwx_A Nitrous oxide reductase 99.0 1E-08 3.4E-13 115.0 21.3 229 155-387 100-432 (595)
252 1flg_A Protein (quinoprotein e 99.0 1.7E-07 5.8E-12 107.2 31.7 255 156-413 117-543 (582)
253 2fp8_A Strictosidine synthase; 99.0 8.2E-08 2.8E-12 101.0 26.2 235 188-429 20-313 (322)
254 1flg_A Protein (quinoprotein e 99.0 1.2E-07 4E-12 108.5 29.3 273 156-432 68-519 (582)
255 3nol_A Glutamine cyclotransfer 99.0 3.3E-08 1.1E-12 99.9 21.7 189 178-373 33-243 (262)
256 3nol_A Glutamine cyclotransfer 99.0 1.1E-07 3.6E-12 96.2 24.0 182 144-332 42-244 (262)
257 3nok_A Glutaminyl cyclase; bet 99.0 6.9E-08 2.4E-12 97.6 22.2 177 189-374 57-254 (268)
258 2xe4_A Oligopeptidase B; hydro 98.9 6.6E-08 2.3E-12 114.2 24.7 190 188-382 175-394 (751)
259 2p4o_A Hypothetical protein; p 98.9 1.4E-06 4.7E-11 91.0 31.1 226 187-420 32-279 (306)
260 3v9f_A Two-component system se 98.9 1.4E-06 4.9E-11 103.1 34.9 275 144-429 257-568 (781)
261 3v64_C Agrin; beta propeller, 98.9 2.7E-06 9.3E-11 90.7 33.7 242 146-392 35-281 (349)
262 3v9f_A Two-component system se 98.9 3.4E-06 1.2E-10 99.9 37.0 273 144-428 312-610 (781)
263 3v65_B Low-density lipoprotein 98.9 2.5E-06 8.5E-11 92.4 32.3 242 147-393 79-325 (386)
264 3nok_A Glutaminyl cyclase; bet 98.9 5.4E-07 1.8E-11 91.1 24.6 181 144-331 54-253 (268)
265 3mbr_X Glutamine cyclotransfer 98.8 4.4E-07 1.5E-11 90.9 22.8 190 178-374 11-223 (243)
266 3mbr_X Glutamine cyclotransfer 98.8 1.3E-06 4.4E-11 87.5 25.5 183 144-332 20-223 (243)
267 1k3i_A Galactose oxidase precu 98.8 9.8E-08 3.3E-12 110.9 20.2 269 149-418 190-530 (656)
268 2p4o_A Hypothetical protein; p 98.8 2.1E-06 7.2E-11 89.5 28.2 224 145-375 32-277 (306)
269 1ijq_A LDL receptor, low-densi 98.8 2E-05 7E-10 82.6 35.7 228 158-391 3-243 (316)
270 2xe4_A Oligopeptidase B; hydro 98.8 3.7E-07 1.3E-11 107.7 23.9 243 142-388 170-460 (751)
271 3v64_C Agrin; beta propeller, 98.8 1.1E-05 3.9E-10 85.9 33.3 231 191-427 38-273 (349)
272 1ijq_A LDL receptor, low-densi 98.8 1.8E-05 6.2E-10 83.0 34.3 225 200-429 3-238 (316)
273 3p5b_L Low density lipoprotein 98.8 2E-05 6.9E-10 85.6 34.7 234 157-394 84-328 (400)
274 2xbg_A YCF48-like protein; pho 98.8 3.8E-05 1.3E-09 81.0 35.8 268 144-426 35-319 (327)
275 3tc9_A Hypothetical hydrolase; 98.7 3E-06 1E-10 93.1 26.4 236 146-385 138-429 (430)
276 3v65_B Low-density lipoprotein 98.7 9.3E-06 3.2E-10 87.8 29.9 225 199-427 88-316 (386)
277 3qqz_A Putative uncharacterize 98.7 1.2E-05 4.2E-10 81.3 28.1 202 137-341 19-251 (255)
278 3sov_A LRP-6, low-density lipo 98.7 2E-05 6.9E-10 82.8 30.7 232 158-393 6-245 (318)
279 3qqz_A Putative uncharacterize 98.7 1.2E-05 4.1E-10 81.4 26.9 201 223-427 21-251 (255)
280 4hw6_A Hypothetical protein, I 98.6 8.6E-06 2.9E-10 89.5 27.5 236 145-385 139-432 (433)
281 3tc9_A Hypothetical hydrolase; 98.6 7.2E-06 2.5E-10 90.1 26.9 236 188-428 138-429 (430)
282 3p5b_L Low density lipoprotein 98.6 4.9E-05 1.7E-09 82.6 32.7 228 199-429 84-320 (400)
283 4hw6_A Hypothetical protein, I 98.6 1.5E-05 5.1E-10 87.6 27.4 235 188-428 140-432 (433)
284 3m0c_C LDL receptor, low-densi 98.6 5.6E-05 1.9E-09 89.0 33.6 232 158-393 397-639 (791)
285 3sov_A LRP-6, low-density lipo 98.5 4.7E-05 1.6E-09 80.0 28.5 228 200-431 6-240 (318)
286 1k3i_A Galactose oxidase precu 98.5 1.7E-06 5.7E-11 100.5 17.8 239 191-429 190-497 (656)
287 3s94_A LRP-6, low-density lipo 98.5 0.00043 1.5E-08 79.4 37.4 282 145-428 84-466 (619)
288 3s94_A LRP-6, low-density lipo 98.4 0.00041 1.4E-08 79.6 35.4 202 145-348 40-248 (619)
289 3kya_A Putative phosphatase; s 98.4 4.4E-05 1.5E-09 84.5 26.0 241 146-389 140-478 (496)
290 3m0c_C LDL receptor, low-densi 98.4 0.0002 7E-09 84.2 32.9 227 200-429 397-632 (791)
291 3amr_A 3-phytase; beta-propell 98.4 6.6E-05 2.3E-09 78.9 24.9 192 155-351 39-272 (355)
292 3ei3_A DNA damage-binding prot 98.4 0.00052 1.8E-08 84.1 35.6 281 144-431 553-915 (1158)
293 2xbg_A YCF48-like protein; pho 98.3 0.00013 4.5E-09 76.7 26.1 229 144-384 79-320 (327)
294 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0014 4.8E-08 75.2 35.6 227 158-389 8-240 (628)
295 3kya_A Putative phosphatase; s 98.3 0.00024 8.3E-09 78.6 27.7 242 188-432 140-478 (496)
296 3ott_A Two-component system se 98.3 0.0017 5.8E-08 76.4 36.7 265 144-425 21-303 (758)
297 2p9w_A MAL S 1 allergenic prot 98.2 0.00027 9.3E-09 73.6 24.9 203 143-345 11-267 (334)
298 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0012 4E-08 75.9 32.8 227 199-430 7-238 (628)
299 2xzh_A Clathrin heavy chain 1; 98.2 0.003 1E-07 65.2 31.9 233 150-388 72-334 (365)
300 2vpj_A Kelch-like protein 12; 98.2 4.5E-05 1.5E-09 78.9 18.6 222 155-387 14-279 (301)
301 3amr_A 3-phytase; beta-propell 98.2 0.00031 1.1E-08 73.8 24.6 185 198-386 40-263 (355)
302 2p9w_A MAL S 1 allergenic prot 98.2 0.0004 1.4E-08 72.3 24.4 201 227-429 11-265 (334)
303 1n7d_A LDL receptor, low-densi 98.2 7.9E-06 2.7E-10 95.4 12.8 220 206-428 384-613 (699)
304 3ott_A Two-component system se 98.2 0.0026 8.9E-08 74.7 34.6 269 144-427 62-350 (758)
305 2ism_A Putative oxidoreductase 98.2 0.0012 4.2E-08 70.1 28.7 224 187-417 31-333 (352)
306 2xzh_A Clathrin heavy chain 1; 98.1 0.011 3.8E-07 61.0 36.0 257 165-431 48-334 (365)
307 2ism_A Putative oxidoreductase 98.1 0.0005 1.7E-08 73.1 25.0 223 145-373 31-332 (352)
308 1bpo_A Protein (clathrin); cla 98.1 0.0056 1.9E-07 65.6 31.9 232 150-387 71-332 (494)
309 2xn4_A Kelch-like protein 2; s 98.1 0.00011 3.7E-09 76.0 18.9 221 157-387 17-277 (302)
310 1n7d_A LDL receptor, low-densi 98.1 8.7E-06 3E-10 95.0 11.0 216 145-361 406-632 (699)
311 3a9g_A Putative uncharacterize 98.1 0.0025 8.6E-08 67.7 29.1 225 187-417 29-330 (354)
312 3a9g_A Putative uncharacterize 98.1 0.003 1E-07 67.1 29.5 228 144-374 28-330 (354)
313 1bpo_A Protein (clathrin); cla 98.1 0.022 7.6E-07 61.0 37.5 257 165-431 47-333 (494)
314 2vpj_A Kelch-like protein 12; 98.0 0.0002 6.7E-09 74.0 19.1 224 197-429 14-278 (301)
315 3ii7_A Kelch-like protein 7; p 98.0 0.00023 7.9E-09 73.7 19.4 222 158-388 14-274 (306)
316 3das_A Putative oxidoreductase 98.0 0.008 2.7E-07 63.4 30.2 229 185-417 30-326 (347)
317 1cru_A Protein (soluble quinop 97.9 0.0081 2.8E-07 66.1 31.0 105 186-290 26-163 (454)
318 3ii7_A Kelch-like protein 7; p 97.9 0.00058 2E-08 70.6 20.4 223 199-429 13-272 (306)
319 2xn4_A Kelch-like protein 2; s 97.9 0.00044 1.5E-08 71.4 19.0 221 199-429 17-276 (302)
320 2g8s_A Glucose/sorbosone dehyd 97.9 0.0047 1.6E-07 65.5 27.3 238 187-427 18-350 (353)
321 1zgk_A Kelch-like ECH-associat 97.9 0.00025 8.7E-09 73.6 16.9 222 155-387 24-288 (308)
322 3ei3_A DNA damage-binding prot 97.9 0.021 7.3E-07 69.9 36.0 232 191-431 697-1001(1158)
323 2g8s_A Glucose/sorbosone dehyd 97.9 0.0043 1.5E-07 65.8 26.2 226 145-373 18-340 (353)
324 4asc_A Kelch repeat and BTB do 97.8 0.0012 4E-08 68.7 20.5 208 159-376 8-253 (315)
325 3s25_A Hypothetical 7-bladed b 97.8 0.0086 3E-07 62.0 26.3 233 154-417 23-280 (302)
326 3sre_A PON1, serum paraoxonase 97.8 0.016 5.6E-07 61.2 28.5 202 146-351 51-308 (355)
327 3das_A Putative oxidoreductase 97.7 0.038 1.3E-06 58.2 29.5 227 143-372 30-324 (347)
328 1zgk_A Kelch-like ECH-associat 97.7 0.001 3.5E-08 68.9 17.5 222 197-428 24-286 (308)
329 3sre_A PON1, serum paraoxonase 97.7 0.0027 9.4E-08 67.3 20.7 174 206-383 81-295 (355)
330 2woz_A Kelch repeat and BTB do 97.6 0.0032 1.1E-07 65.4 20.6 202 167-376 25-263 (318)
331 1cru_A Protein (soluble quinop 97.6 0.04 1.4E-06 60.5 29.1 104 145-248 27-163 (454)
332 2uvk_A YJHT; unknown function, 97.5 0.0013 4.3E-08 69.7 15.8 233 155-393 19-349 (357)
333 3s25_A Hypothetical 7-bladed b 97.5 0.012 4E-07 61.0 22.0 215 196-436 23-260 (302)
334 3kci_A Probable E3 ubiquitin-p 97.5 0.12 4E-06 55.4 30.7 268 156-432 10-348 (389)
335 4asc_A Kelch repeat and BTB do 97.5 0.004 1.4E-07 64.6 18.4 189 151-345 41-279 (315)
336 2be1_A Serine/threonine-protei 97.4 0.0019 6.6E-08 67.9 15.4 189 157-348 11-236 (339)
337 2uvk_A YJHT; unknown function, 97.4 0.0035 1.2E-07 66.2 17.0 216 197-420 19-327 (357)
338 3b7f_A Glycosyl hydrolase, BNR 97.3 0.078 2.7E-06 56.7 27.3 261 157-423 23-366 (394)
339 2woz_A Kelch repeat and BTB do 97.2 0.0087 3E-07 62.0 17.8 189 152-346 53-290 (318)
340 3qhy_B Beta-lactamase inhibito 97.2 0.018 6.3E-07 58.9 19.8 226 187-432 24-249 (282)
341 2be1_A Serine/threonine-protei 97.2 0.0052 1.8E-07 64.6 15.8 146 199-345 11-185 (339)
342 3qhy_B Beta-lactamase inhibito 97.2 0.01 3.4E-07 60.9 17.1 223 146-387 25-247 (282)
343 3pbp_A Nucleoporin NUP82; beta 97.2 0.036 1.2E-06 59.4 21.4 145 279-425 29-208 (452)
344 1suu_A DNA gyrase subunit A; t 97.1 0.22 7.4E-06 51.6 26.8 187 154-343 6-231 (312)
345 1suu_A DNA gyrase subunit A; t 97.1 0.2 6.9E-06 51.9 26.4 229 196-428 6-282 (312)
346 3uc1_A DNA gyrase subunit A; D 97.1 0.18 6.3E-06 52.5 25.9 227 156-385 3-278 (327)
347 3sbq_A Nitrous-oxide reductase 97.1 0.12 4E-06 57.1 24.7 225 159-386 73-408 (638)
348 2wg3_C Hedgehog-interacting pr 97.0 0.35 1.2E-05 53.0 27.8 241 187-430 14-372 (463)
349 3pbp_A Nucleoporin NUP82; beta 97.0 0.051 1.7E-06 58.3 20.1 144 235-381 27-207 (452)
350 3b7f_A Glycosyl hydrolase, BNR 97.0 0.18 6.3E-06 53.7 25.4 257 144-407 54-391 (394)
351 1zi0_A DNA gyrase subunit A; b 97.0 0.4 1.4E-05 49.5 26.9 227 155-385 2-276 (307)
352 1xi4_A Clathrin heavy chain; a 96.9 0.054 1.8E-06 66.1 21.9 256 165-430 47-332 (1630)
353 3uc1_A DNA gyrase subunit A; D 96.9 0.14 4.8E-06 53.4 22.9 199 143-343 40-279 (327)
354 2zwa_A Leucine carboxyl methyl 96.7 0.048 1.7E-06 63.3 19.6 194 154-347 396-639 (695)
355 1wp5_A Topoisomerase IV; broke 96.7 0.44 1.5E-05 49.5 25.0 230 196-429 3-277 (323)
356 3l6v_A GYRA, DNA gyrase subuni 96.7 0.84 2.9E-05 48.3 28.6 228 153-384 4-314 (370)
357 1tl2_A L10, protein (tachylect 96.7 0.065 2.2E-06 52.3 16.7 149 271-430 41-209 (236)
358 1xi4_A Clathrin heavy chain; a 96.7 0.049 1.7E-06 66.5 19.0 204 152-360 73-306 (1630)
359 3no0_A DNA gyrase subunit A; D 96.6 0.24 8.2E-06 50.3 21.6 196 144-343 23-246 (276)
360 1tl2_A L10, protein (tachylect 96.6 0.054 1.9E-06 52.8 15.5 141 187-336 41-203 (236)
361 3no0_A DNA gyrase subunit A; D 96.6 0.42 1.4E-05 48.5 23.1 193 187-385 24-245 (276)
362 2wg3_C Hedgehog-interacting pr 96.6 0.5 1.7E-05 51.8 25.1 105 145-249 14-159 (463)
363 4hvt_A Ritya.17583.B, post-pro 96.5 0.35 1.2E-05 56.0 24.4 229 194-428 137-429 (711)
364 3l6v_A GYRA, DNA gyrase subuni 96.4 0.8 2.7E-05 48.5 25.1 231 195-429 4-316 (370)
365 3mvd_K Regulator of chromosome 96.4 1.4 4.8E-05 47.3 38.4 234 187-432 75-377 (423)
366 3iot_A Maltose-binding protein 96.4 0.00054 1.9E-08 75.3 -0.2 6 93-98 6-11 (449)
367 2zwa_A Leucine carboxyl methyl 96.4 0.083 2.8E-06 61.3 18.3 191 196-389 396-638 (695)
368 1wp5_A Topoisomerase IV; broke 96.3 0.71 2.4E-05 48.0 23.1 228 154-385 3-276 (323)
369 1zi0_A DNA gyrase subunit A; b 96.2 1.3 4.6E-05 45.5 27.6 229 197-429 2-277 (307)
370 3sbq_A Nitrous-oxide reductase 96.1 0.78 2.7E-05 50.7 22.7 228 201-429 73-408 (638)
371 3kci_A Probable E3 ubiquitin-p 96.1 1.9 6.5E-05 45.8 29.8 225 156-387 62-346 (389)
372 4hvt_A Ritya.17583.B, post-pro 96.0 0.82 2.8E-05 52.9 24.2 235 146-385 130-429 (711)
373 3mvd_K Regulator of chromosome 95.8 2.6 9E-05 45.1 33.1 228 146-386 76-374 (423)
374 4d9s_A UVB-resistance protein 95.7 2.8 9.7E-05 44.7 38.8 272 146-432 17-360 (406)
375 4d9s_A UVB-resistance protein 94.4 6.4 0.00022 41.9 32.6 233 187-432 16-308 (406)
376 1sqj_A OXG-RCBH, oligoxylogluc 94.4 6.4 0.00022 46.0 25.3 145 144-291 14-190 (789)
377 3q6k_A 43.2 kDa salivary prote 94.1 6.9 0.00023 41.4 22.8 167 251-417 124-342 (381)
378 2cn3_A Xyloglucanase, beta-1,4 94.0 11 0.00039 43.4 27.4 229 145-376 23-322 (737)
379 3of7_A Regulator of chromosome 93.8 9.2 0.00032 41.6 31.0 191 229-432 148-408 (473)
380 3q6k_A 43.2 kDa salivary prote 93.4 9.2 0.00032 40.4 25.7 187 144-330 86-341 (381)
381 4gq2_M Nucleoporin NUP120; bet 93.2 8.7 0.0003 45.9 23.8 71 314-384 237-315 (950)
382 1a12_A RCC1, regulator of chro 93.0 11 0.00037 40.1 38.0 231 187-432 59-368 (413)
383 4gq2_M Nucleoporin NUP120; bet 92.9 11 0.00039 44.9 24.3 38 272-309 237-274 (950)
384 1sqj_A OXG-RCBH, oligoxylogluc 92.1 22 0.00075 41.4 24.9 146 186-333 14-190 (789)
385 1a12_A RCC1, regulator of chro 91.4 16 0.00056 38.6 30.8 227 145-386 59-365 (413)
386 1zvt_A Topoisomerase IV subuni 90.6 14 0.00048 36.6 18.3 142 241-385 3-162 (256)
387 1zvt_A Topoisomerase IV subuni 89.3 5.4 0.00019 39.7 14.0 143 199-343 3-163 (256)
388 2zux_A YESW protein; beta-prop 88.2 35 0.0012 37.7 26.9 270 143-432 177-535 (591)
389 2cn3_A Xyloglucanase, beta-1,4 87.2 43 0.0015 38.6 21.9 200 230-431 24-283 (737)
390 3of7_A Regulator of chromosome 86.6 39 0.0013 36.5 29.6 188 187-386 148-405 (473)
391 3f7f_A Nucleoporin NUP120; nuc 77.1 56 0.0019 37.3 16.8 68 314-386 223-305 (729)
392 2zuy_A YESX protein; beta-prop 75.9 1E+02 0.0035 34.2 28.3 162 268-432 365-556 (620)
393 4fhn_B Nucleoporin NUP120; pro 74.4 58 0.002 39.6 17.4 38 314-351 239-276 (1139)
394 4fhn_B Nucleoporin NUP120; pro 73.0 69 0.0023 38.9 17.6 38 272-309 239-276 (1139)
395 1zvu_A Topoisomerase IV subuni 71.9 73 0.0025 36.1 15.8 147 238-386 470-633 (716)
396 1zvu_A Topoisomerase IV subuni 69.5 1.4E+02 0.0047 33.9 17.3 73 228-301 553-633 (716)
397 2zux_A YESW protein; beta-prop 69.3 1.4E+02 0.0048 32.9 22.3 177 167-353 152-410 (591)
398 3m7h_A Putidacin L1; monocot m 69.1 95 0.0033 30.9 17.0 98 147-257 35-133 (276)
399 4ftd_A Uncharacterized protein 66.2 1.4E+02 0.0048 31.8 15.9 156 189-346 191-380 (453)
400 1vyd_A Cytochrome C2; electron 63.9 2.6 8.8E-05 36.5 1.7 39 455-493 12-57 (116)
401 3hx6_A Type 4 fimbrial biogene 63.9 1.8E+02 0.0061 32.1 17.9 147 198-345 85-286 (570)
402 4a9v_A PHOX; hydrolase, beta-p 63.5 1E+02 0.0036 34.1 14.7 60 272-331 477-549 (592)
403 3a0f_A Xyloglucanase; beta-pro 59.7 2.4E+02 0.0083 32.3 24.1 149 227-377 19-203 (763)
404 1ofz_A Fucose-specific lectin; 57.5 1.7E+02 0.0057 29.7 17.2 112 186-299 60-196 (312)
405 3a0f_A Xyloglucanase; beta-pro 56.0 2.8E+02 0.0095 31.8 25.2 235 188-427 488-760 (763)
406 3zwu_A Alkaline phosphatase PH 53.6 1.7E+02 0.0057 32.7 14.5 58 273-330 478-548 (592)
407 3mez_B Mannose-specific lectin 52.4 70 0.0024 26.9 8.9 26 316-343 59-84 (113)
408 3zwu_A Alkaline phosphatase PH 50.0 51 0.0017 36.9 9.5 58 147-204 478-548 (592)
409 3mez_B Mannose-specific lectin 48.5 1.2E+02 0.0041 25.4 10.4 25 359-386 60-84 (113)
410 2bh4_X Cytochrome C-550; C-typ 44.2 8.4 0.00029 34.1 1.7 38 456-493 15-59 (134)
411 4a9v_A PHOX; hydrolase, beta-p 43.8 89 0.003 34.7 10.0 61 145-205 476-549 (592)
412 3hx6_A Type 4 fimbrial biogene 43.5 3.7E+02 0.013 29.6 19.3 148 240-388 85-286 (570)
413 4h3o_A Lectin; cadmium, plant 40.1 1.4E+02 0.0048 24.6 8.7 24 317-342 54-77 (105)
414 3elq_A Arylsulfate sulfotransf 38.1 4.5E+02 0.015 29.0 26.2 39 231-270 357-395 (571)
415 2zuy_A YESX protein; beta-prop 38.1 4.6E+02 0.016 29.1 23.7 105 250-360 296-421 (620)
416 3f7f_A Nucleoporin NUP120; nuc 37.9 43 0.0015 38.2 6.5 38 145-184 222-259 (729)
417 1xks_A Nuclear pore complex pr 37.1 4.1E+02 0.014 28.3 20.6 146 151-302 44-238 (450)
418 3llp_A Fascin; beta-trefoil, a 36.3 4.4E+02 0.015 28.4 16.1 268 153-436 225-492 (493)
419 155c_A Cytochrome C550; electr 35.7 11 0.00039 33.3 1.1 38 456-493 16-59 (135)
420 1cxc_A Cytochrome C2; electron 32.3 15 0.00052 31.9 1.3 39 455-493 14-61 (124)
421 3a0c_A Mannose/sialic acid-bin 31.1 2.3E+02 0.0077 23.5 10.4 24 316-342 22-45 (110)
422 3mez_A Mannose-specific lectin 29.5 2.4E+02 0.0083 23.4 8.9 91 197-301 19-109 (111)
423 4h3o_A Lectin; cadmium, plant 28.7 2.4E+02 0.0083 23.1 10.4 46 275-330 54-99 (105)
424 3dzw_A Agglutinin; lectin, man 28.1 2.5E+02 0.0086 23.1 9.8 24 317-342 53-76 (109)
425 1b2p_A Protein (lectin); manno 27.2 2.8E+02 0.0096 23.3 11.2 13 402-414 95-107 (119)
426 3m97_X Cytochrome C-552, cytoc 23.1 38 0.0013 30.1 2.3 38 454-493 52-90 (140)
427 3elq_A Arylsulfate sulfotransf 22.7 7.9E+02 0.027 27.0 27.4 38 273-312 357-395 (571)
428 2dpf_A Curculin; sweet taste, 22.7 3.3E+02 0.011 22.6 9.5 80 281-383 19-99 (115)
429 3a0c_A Mannose/sialic acid-bin 21.3 3.5E+02 0.012 22.3 10.8 44 275-328 54-97 (110)
430 3c2c_A Cytochrome C2; electron 20.1 56 0.0019 27.2 2.7 39 455-493 13-52 (112)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-45 Score=401.42 Aligned_cols=287 Identities=23% Similarity=0.423 Sum_probs=274.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|.+.|++++|++++++|++|+.||+|+|||+.+++....+.+|...|.+++|++++++|++|+.|++|+|||+.+.
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+.+..+..|...|.+++|++++++|++++.|++|++||++++..+..+.+|...|.+++|++++++|++++.|+.|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spd--------------------g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
+++++++..+..|...|.+++|+++ +.+|++|+.|+.|+|||+++++++..+.+|...|+
T Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 9999999999999999999999986 67899999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++|++ ++.+|++++.||.|+|||+.+..... .+..|...|++++|++++.+|++++.||+|+||++
T Consensus 343 ~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 343 GVLFHS-GGKFILSCADDKTLRVWDYKNKRCMK-TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECS-SSSCEEEEETTTEEEEECCTTSCCCE-EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCceEE-EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999 88999999999999999998776554 44579999999999999999999999999999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-44 Score=381.61 Aligned_cols=290 Identities=22% Similarity=0.348 Sum_probs=270.1
Q ss_pred EEEecCCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 136 VHTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
+...+.+|.+.|++|+|+++ +++|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.+|++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34578899999999999975 67899999999999999877654 4568899999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
|+|||+.+++.+..+..+...+.+++|++++++|++++.|+.|++||+++++....+..+...|.+++|++++++|++++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
.|+.|+|||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+.+|...|.+++|++ ++.+
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~ 262 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTH 262 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSE
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
|++++.|++|+|||+++...+.. +..|...|++++|++++.+|++++.||+|+|||.
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999988765544 4569999999999999999999999999999996
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-43 Score=378.85 Aligned_cols=288 Identities=24% Similarity=0.379 Sum_probs=267.2
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
....+.+|.+.|++++|++|+++|++|+.||+|+|||+.+++.+..+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC----ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~----~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.+. .....+..|...|.++.|++++ .|++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 875 3456677899999999999876 48999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~ 369 (715)
+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+.. +...|++++|++ ++.+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 284 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCE
Confidence 9999999999999999999999999999999999999999999999999999988877753 335799999999 8999
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|++|+.||.|++||+.+.... ..+.+|.+.|++++|++++.+|++++.|++|+|||
T Consensus 285 l~~g~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccCcEe-eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999876654 45567999999999999999999999999999996
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-42 Score=374.29 Aligned_cols=289 Identities=25% Similarity=0.407 Sum_probs=266.4
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
....+.+|.+.|++++|++++++|++|+.||+|+|||..+++....+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC--CCCEEEE
Q 005096 216 NMN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVS 287 (715)
Q Consensus 216 ~~~------~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp--dg~~L~s 287 (715)
... .....+..|...|.+++|++++..|++++.|++|++||+++++.+..+.+|...|.+++|++ ++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 643 23455668999999999999999999999999999999999999999999999999999987 4689999
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC--CCCeEEEEEccC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPF 365 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~ 365 (715)
++.|+.|++||+++++++..+..|...|++++|++++++|++++.|++|+|||+++.+.+..+..+ ...+.+++|++
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~- 294 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-
Confidence 999999999999999999999999999999999999999999999999999999999888777644 34789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++.+|++++.|+.|+|||+.+.... ..+.+|.+.|++++|++|+.+|++++.|++|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceE-EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 8999999999999999999877654 44557999999999999999999999999999995
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-42 Score=365.42 Aligned_cols=290 Identities=25% Similarity=0.401 Sum_probs=262.0
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..++.+|.+.|++++|+|++++|++++.||+|+|||+++++.+..+..|...|.+++|++++++|++|+.|+.|+|||++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I 294 (715)
+++.+..+..|...|.+++|++++++|++++.|++|++||+++. .....+.+|...|.+++|+| ++.+|++++.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999876 55677889999999999998 67899999999999
Q ss_pred EEEECCCCceeEEec-cCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 295 KLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~-~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
+|||+++.+....+. .+...+..++|++ ++.+|++++.|+.|+|||+++++++..+.+|...|.+++|++ ++.+|+
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~ 244 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEE
Confidence 999999877666554 4567899999987 778999999999999999999999999999999999999999 788999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC--EEEEEECCCeEEEEecCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~L~sgs~Dg~I~iWdl~~ 429 (715)
+++.||+|+|||+++.+... .+..|...+++++|++++. +|++++ |..+.+|++..
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEK-TLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp EEETTSCEEEEETTTCCEEE-EECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred EEcCCCeEEEEECCCCceee-eccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 99999999999998876554 4456888999999999874 567666 55577887754
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.8e-42 Score=360.00 Aligned_cols=292 Identities=26% Similarity=0.448 Sum_probs=268.8
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|...|++++|++++++|++++.||.|+|||+.+++....+..|...|.+++|++++++|++++.|+.|+|||+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+..|...|.+++|++++++|++++.|+.|+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE--EEEccCCCCEEEE
Q 005096 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA--LAWHPFHEEYFVS 372 (715)
Q Consensus 296 iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~--l~~sp~~~~~l~s 372 (715)
+||+++++.+..+. .+...+.+++|++++++|++++.|+.|++||+++++.+..+..|...+.+ ..++..++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999998887764 45667999999999999999999999999999999999999988765433 3455547899999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 428 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~Dg~I~iWdl~ 428 (715)
++.||.|++||+.+.... ..+.+|...|.+++|++++.+|++++ .|++|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhh-hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999876654 45567999999999999999999997 69999999875
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-42 Score=399.89 Aligned_cols=363 Identities=18% Similarity=0.338 Sum_probs=287.8
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceee-------
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA------- 133 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------- 133 (715)
+.+|.+.+....+. ....++++...+.+||+|+....+.... .....+...+..++|+.+.......
T Consensus 55 ~~~h~~~v~~~~~s-----pdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 55 YTEHSHQTTVAKTS-----PSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp ECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ecCCCCceEEEEEC-----CCCcEEEEEeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 45555555443332 2345677777889999999864332211 1111122334445555443322111
Q ss_pred -eE-------EEEecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE
Q 005096 134 -KF-------VHTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 204 (715)
Q Consensus 134 -~~-------~~~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg 204 (715)
.+ ....+.+|...|++++|+|++. +|++|+.|++|+|||..+++....+.+|...|++++|++|+++|+++
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 00 1235789999999999999987 69999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeeec-------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-------------
Q 005096 205 DDGGAIKYWQNNMNNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER------------- 264 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~~~-------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~------------- 264 (715)
+.|++|+|||+.+++....+. .|...|.+++|++++++|++++.|++|+|||+++++.+.
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999988877763 799999999999999999999999999999998776543
Q ss_pred ------------------------------EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-c----
Q 005096 265 ------------------------------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H---- 309 (715)
Q Consensus 265 ------------------------------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~---- 309 (715)
.+.+|...|++++|++++++|++++.|+.|++||+++++....+ .
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 33468889999999999999999999999999999876443221 0
Q ss_pred -----------------------------------------------------------------------------cCC
Q 005096 310 -----------------------------------------------------------------------------GHK 312 (715)
Q Consensus 310 -----------------------------------------------------------------------------~~~ 312 (715)
.+.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 012
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
..+.+++|++|+++|++|+.|+.|+|||+++++. +.. ..|...|++|+|+| ++++|++++.|++|++||+.+....
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCce
Confidence 3467899999999999999999999999987654 333 67999999999999 8999999999999999999763332
Q ss_pred EE--EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 391 VE--IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 391 ~~--~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.. ....|...|++++|++|+++|++++.|++|+||+++...
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 22 233499999999999999999999999999999997654
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6e-43 Score=381.37 Aligned_cols=294 Identities=22% Similarity=0.393 Sum_probs=265.8
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|.+.|++++|++++++|++|+.||+|+|||+.+++....+..|...|.+++|++++++|++|+.|+.|+|||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc-------eeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEe-----cccCCceEEEEEcC-C
Q 005096 216 NMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHP-T 281 (715)
Q Consensus 216 ~~~~-------~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l-----~~~~~~I~si~~sp-d 281 (715)
.+.. ....+.+|...|.++.|++++ ..|++++.|++|++||+++++.+..+ .+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 7532 345567899999999999864 57999999999999999999888777 57889999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-----
Q 005096 282 KSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK----- 355 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~----- 355 (715)
+++|++|+.|++|++||++ .++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8899999999999999998 4577888999999999999999999999999999999999999999888765432
Q ss_pred --CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe---eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 356 --DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 356 --~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++++|++ ++.+|++|+.||.|++||+........+. ..|.+.|++++|++|+.+|++|+.|++|+||++...
T Consensus 298 ~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 298 LPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred cCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 489999999 89999999999999999998776655442 568999999999999999999999999999998643
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=369.08 Aligned_cols=295 Identities=22% Similarity=0.443 Sum_probs=254.6
Q ss_pred EEecCCCCc-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE---EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 137 HTSLNKNRC-SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 137 ~~~l~~H~~-~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~---~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+.+|.. .|.+++|+|+|++||+|+.|++|+|||+++.+... ...+|...|.+++|++++++|++++.|+.|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 456788988 99999999999999999999999999998876432 23679999999999999999999999999999
Q ss_pred EeCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---eeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 213 WQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 213 wd~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~---~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
||++.+. .+..+.+|...|.+++|++++++|++++.|++|++||+++. ..+..+..|...|.+++|++++++|++
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 9988764 56778899999999999999999999999999999999765 345677889999999999999999999
Q ss_pred EeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC---------------CeEEEEe
Q 005096 288 GGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---------------MKELESF 350 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t---------------~~~~~~~ 350 (715)
++.|+.|++||+++++ ++..+.+|...|++++|++++++|++++.|++|+|||+.. .+++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999998775 4567889999999999999999999999999999999632 2344455
Q ss_pred ec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--------eEEEeeccCCCEEEEEEcCCC-CEEEEEECCC
Q 005096 351 RG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDH 420 (715)
Q Consensus 351 ~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg 420 (715)
.+ |...|.+++|++ ++.+|++++.|+.|++|+.+.... ......+|...|++++|++++ .+|++++.||
T Consensus 248 ~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp CSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred cCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 54 888999999999 788899999999999999875431 122335789999999999997 5999999999
Q ss_pred eEEEEecCCCCC
Q 005096 421 TTKFWCRNRPGD 432 (715)
Q Consensus 421 ~I~iWdl~~~~~ 432 (715)
+|+||++.....
T Consensus 327 ~v~~W~~~~~~~ 338 (345)
T 3fm0_A 327 EVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECC---
T ss_pred cEEEEEecCCCC
Confidence 999999976443
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-41 Score=361.20 Aligned_cols=291 Identities=19% Similarity=0.312 Sum_probs=261.0
Q ss_pred EEEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC-----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 135 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~-----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
.+..+|.+|.+.|++++|++++ ++|++|+.|++|+|||+.+ +..+..+.+|...|.+++|++++++|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456789999999999999965 8999999999999999764 234677899999999999999999999999999
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC------C
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------K 282 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd------g 282 (715)
+|+|||+.+++....+..|...|.+++|++++.+|++++.|++|++||++. ..+..+.+|...|.+++|+++ +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999964 577788899999999999985 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
.+|++++.|+.|++||+++.+....+.+|...|.+++|++++++|++++.|+.|+|||+++++.+..+.. ...|.+++|
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~ 245 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999988875 468999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe-------eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++ ++.+|++++.+ .|++|+++.......+. ..|...|.+++|++||++|++++.||.|+||++.+
T Consensus 246 sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 99 78888888755 59999997655443332 23566799999999999999999999999999854
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-42 Score=370.42 Aligned_cols=285 Identities=20% Similarity=0.292 Sum_probs=243.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------CCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~-----------~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
.|...|.+++|++||++|++++ |+++++||.. ..........++..|.+++|+++ +.|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEE
Confidence 4667799999999999998887 6677777622 11122233346778999999988 578899999999
Q ss_pred EEEeCCCCceeee----ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EE
Q 005096 211 KYWQNNMNNVKAN----KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LL 285 (715)
Q Consensus 211 ~iwd~~~~~~~~~----~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L 285 (715)
+|||+++++.... +.+|...|++|+|++++++|++++.|++|+|||+++++.+..+.+|...|++++|++++. +|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999998765433 457999999999999999999999999999999999999999999999999999999885 78
Q ss_pred EEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++++.|++|+|||+++++.+..+. .+...+++++|++ ++++|++|+.|+.|+|||+++++.+.++.+|...|++++|
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999999999999888764 3556799999998 5678899999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecCCC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~~~ 430 (715)
++++..+|++++.|++|+|||++++.. ....+|.+.|++++|++++. +|++++.|++|++|++..+
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~~--~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSEL--FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCEE--EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCcE--EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 996668999999999999999987653 33467999999999999975 6789999999999999754
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-42 Score=372.63 Aligned_cols=290 Identities=19% Similarity=0.287 Sum_probs=244.9
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQ------SGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~------dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..|...|++|+|||||++||+++. |+.|++|+..++. .......|...|.+++|+++++ +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 469999999999999999999997 7889999987654 3344567889999999999875 5567889999
Q ss_pred EEEeCCCCceee----eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EE
Q 005096 211 KYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LL 285 (715)
Q Consensus 211 ~iwd~~~~~~~~----~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L 285 (715)
+|||+.+++... ....|...|.+++|++++++|++++.|++|++||+++++.+..+..|...|++++|++++. +|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998875433 3347899999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCcEEEEECCCCceeEEe--ccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++++.|+.|+|||+++++.+..+ ..+...+++++|+++ +.+|++|+.|+.|+|||+++++.+..+..|...|++++|
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 99999999999999998876654 346678999999996 568999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEECCCeEEEEecCCCCCc
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
++++..+|++++.|++|+|||+++++.. .. ..|.+.|++|+|+| |+.+|++++.||+|++|++...++.
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVF-RD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEE-EE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEe-EE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9966789999999999999999876543 33 36999999999998 7999999999999999999765544
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-41 Score=360.06 Aligned_cols=289 Identities=20% Similarity=0.356 Sum_probs=242.8
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEEE-ec-cCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMIL-QA-HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~l-~~-h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+.+|.+.|++++|+++ +||+|+.|++|+|||+.+. +....+ .. |...|.+++|++++++|++++.|++|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4567899999999999988 9999999999999999875 445555 34 9999999999999999999999999999
Q ss_pred EeCCC-------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC----CeeEEEecccCCceEEEEEcCC
Q 005096 213 WQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 213 wd~~~-------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~----~~~~~~l~~~~~~I~si~~spd 281 (715)
||++. .+....+.+|...|.+++|++++++|++++.|++|+|||++. .+.+..+.+|...|.+++|+++
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 99853 345667789999999999999999999999999999999943 2566788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCC--------eEEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAM--------KELES 349 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spd--g~~Lasgs~dg~I~iwDl~t~--------~~~~~ 349 (715)
+++|++++.|++|+|||++++ +++..+.+|...|.+++|+++ +.+|++++.|++|+|||++++ ..+..
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence 999999999999999999876 678889999999999999998 678999999999999999754 34555
Q ss_pred eec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--eEEEeeccCC-CEEEEEEcC--CCCEEEEEECCCeEE
Q 005096 350 FRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--QVEIHNVHDN-TVWDLAWHP--IGYLLCSGSNDHTTK 423 (715)
Q Consensus 350 ~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--~~~~~~~h~~-~V~~l~~sp--dg~~L~sgs~Dg~I~ 423 (715)
+.. |...|.+++|++ +.+|++++.||.|+|||..++.. .......|.. .|++++|++ ++.+|++++.||+|+
T Consensus 245 ~~~~h~~~v~~v~~s~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp CCSCCSSCEEEEEECT--TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred cccccccceEEEEEcC--CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 554 889999999995 35899999999999999876532 2233456776 899999999 689999999999999
Q ss_pred EEecCC
Q 005096 424 FWCRNR 429 (715)
Q Consensus 424 iWdl~~ 429 (715)
||+++.
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999854
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-40 Score=363.50 Aligned_cols=284 Identities=23% Similarity=0.401 Sum_probs=254.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC------------------CEEEEEEcCCCCEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH------------------AIRSMVWSHNDNWMVS 203 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~------------------~V~~l~~spdg~~L~t 203 (715)
+|...|+|++|++||++||+|+ ++.++||++.+++.+..+..+.. .|++++|++++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 67899999999998888766542 3999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TK 282 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg 282 (715)
|+.|+.|+|||+++++.+..+..|...|.+++|++++++|++++.|++|++||+++++....+. +...+.+++|++ ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998887776 566899999999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEe-------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSF-------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------- 344 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~-------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----------- 344 (715)
++|++++.|+.|+|||+++++.+..+ .+|...|.+++|++++++|++++.|+.|+|||+++.
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 99999999999999999999887776 568889999999999999999999999999999763
Q ss_pred -eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC------CCCEEEEEE
Q 005096 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP------IGYLLCSGS 417 (715)
Q Consensus 345 -~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp------dg~~L~sgs 417 (715)
.+...+.+|...|.+++|++ ++.+|++++.|+.|++||+.++... ..+.+|.+.|.+++|++ ++.+|++++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~-~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL-LMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE-EEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 34567788999999999999 8899999999999999999887654 45567999999999986 678999999
Q ss_pred CCCeEEEEecCC
Q 005096 418 NDHTTKFWCRNR 429 (715)
Q Consensus 418 ~Dg~I~iWdl~~ 429 (715)
.||+|+||++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999999854
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-40 Score=354.92 Aligned_cols=289 Identities=18% Similarity=0.311 Sum_probs=248.7
Q ss_pred EEEecCCCCccEEEEEE-----cC-CCCEEEEEeCCCeEEEEeCCCC-------ceEEEEeccCCCEEEEEEcCCCCEEE
Q 005096 136 VHTSLNKNRCSINRVLW-----TP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMV 202 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~-----sp-dg~~Latgs~dg~I~Iwd~~~~-------~~~~~l~~h~~~V~~l~~spdg~~L~ 202 (715)
....+.+|.+.|++++| ++ |+++|++|+.|++|+|||+.+. .....+.+|...|.+++|++++.+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 34578899999999999 76 9999999999999999998753 35677889999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec---ccCCceEEEEEc
Q 005096 203 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWH 279 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~~I~si~~s 279 (715)
+++.|++|+|||+++++....+..|...|.+++|++++++|++++.|++|++||+.... ...+. .|...|.+++|+
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999997433 33332 678899999999
Q ss_pred CCC----------CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEE
Q 005096 280 PTK----------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELE 348 (715)
Q Consensus 280 pdg----------~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~ 348 (715)
+++ .+|++++.|+.|++||. +.+....+..|...|++++|++++++|++++.|+.|+|||+++.. ...
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 987 78999999999999994 466777888999999999999999999999999999999995443 334
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE--EEe----------eccCCCEEEEEEcCCCCEEEEE
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV--EIH----------NVHDNTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~--~~~----------~~h~~~V~~l~~spdg~~L~sg 416 (715)
.+ .+...|.+++|++ ++.+|+++ .|+.|++||+.+..... .+. .+|...|++++|++++.+|++|
T Consensus 251 ~~-~~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EF-DAGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EE-ECSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred ee-cCCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 43 3556799999999 67777655 57889999997765432 211 1577889999999999999999
Q ss_pred ECCCeEEEEecCC
Q 005096 417 SNDHTTKFWCRNR 429 (715)
Q Consensus 417 s~Dg~I~iWdl~~ 429 (715)
+.||.|++|+++.
T Consensus 328 ~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 328 FTDGVIRTFSFET 340 (343)
T ss_dssp ETTSEEEEEEEEE
T ss_pred cCCceEEEEEEEc
Confidence 9999999999853
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.7e-41 Score=387.51 Aligned_cols=288 Identities=19% Similarity=0.386 Sum_probs=250.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-------ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-------AHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.+|...|++++|++|+++|++++.|++|+|||+.+++.+..+. +|.+.|.+++|++++++|++++.|++|
T Consensus 184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 4578999999999999999999999999999999999999888884 799999999999999999999999999
Q ss_pred EEEeCCCCceee-------------------------------------------eecCCCCCeEEEEEecCCCEEEEEE
Q 005096 211 KYWQNNMNNVKA-------------------------------------------NKSAHKESVRDLSFCRTDLKFCSCS 247 (715)
Q Consensus 211 ~iwd~~~~~~~~-------------------------------------------~~~~h~~~I~~l~~spd~~~Las~s 247 (715)
+|||+.+++... .+.+|...|.+++|++++++|++++
T Consensus 264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343 (611)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 999998765432 2346889999999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEe-c-----------------------------------------------------------
Q 005096 248 DDTTVKVWDFARCQEERSL-T----------------------------------------------------------- 267 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~~~~l-~----------------------------------------------------------- 267 (715)
.|++|++||+.+++....+ .
T Consensus 344 ~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 423 (611)
T 1nr0_A 344 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 423 (611)
T ss_dssp TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS
T ss_pred CCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCC
Confidence 9999999998765432221 0
Q ss_pred ----------------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCC
Q 005096 268 ----------------------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 268 ----------------------~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spd 323 (715)
.+...+.+++|+||+++|++++.|++|+|||+++++. +.. ..|...|++++|++|
T Consensus 424 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspd 502 (611)
T 1nr0_A 424 DIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNN 502 (611)
T ss_dssp SCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTT
T ss_pred cEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCC
Confidence 0123467899999999999999999999999987643 233 568999999999999
Q ss_pred CCEEEEEECCCeEEEEECCC-CeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE-EEeecc-C
Q 005096 324 GNWVLTASKDQIIKLYDIRA-MKELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EIHNVH-D 398 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t-~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~-~~~~~h-~ 398 (715)
+++|++++.|++|++||+.+ ++.+.. +..|...|.+++|+| ++++|++++.|++|+|||+++..... .+..+| .
T Consensus 503 g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~ 581 (611)
T 1nr0_A 503 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581 (611)
T ss_dssp SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred CCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcc
Confidence 99999999999999999987 666554 345999999999999 89999999999999999998766443 667788 8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..|++++|++++. |++++.|++|++|++.
T Consensus 582 ~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 582 SSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999999998 9999999999999973
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-39 Score=345.49 Aligned_cols=292 Identities=21% Similarity=0.353 Sum_probs=257.6
Q ss_pred EEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
+..+|++|++.|++|+|+|+ +++||+|+.|++|+|||+.+.+ ....+.+|...|.+++|++++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 34579999999999999997 6899999999999999987643 46678899999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE-EEecccCCceEEEEEcCCC--CEEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTK--SLLV 286 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~-~~l~~~~~~I~si~~spdg--~~L~ 286 (715)
|++|+............+...+..+.+++++.+|++++.|+.+++||+...... ..+..|...|.+++|++++ .+++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999888888889999999999999999999999999999999765443 4456788899999998765 5788
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCC
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~ 366 (715)
+++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++.+.+..+.. ...|.+++|++ +
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~ 267 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP-N 267 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECS-S
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999988875 46799999998 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEE--------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 367 EEYFVSGSLDGSIFHWLVGHETPQVEI--------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~~~~~~~~--------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
+. +++++.|+.|+|||++.......+ ...|...|++++|++|+++|++|+.||.|+|||++..
T Consensus 268 ~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 268 RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 54 455667999999999876544332 2357889999999999999999999999999999754
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=349.96 Aligned_cols=291 Identities=16% Similarity=0.257 Sum_probs=260.9
Q ss_pred CCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecC
Q 005096 62 DAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLN 141 (715)
Q Consensus 62 ~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 141 (715)
.+|.+.+....+.... ....+++.+...+.+||+|+..... ......+.
T Consensus 29 ~~H~~~V~~v~~~~~~-~~~~~~l~tgs~D~~v~vW~~~~~~------------------------------~~~~~~l~ 77 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK-KENSETVVTGSLDDLVKVWKWRDER------------------------------LDLQWSLE 77 (321)
T ss_dssp TSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETTE------------------------------EEEEEEEC
T ss_pred ccCCCcEEEEEEecCC-CCCCCEEEEEcCCCCEEEEECCCCC------------------------------eeeeeeec
Confidence 4555555554442211 1223467777888999999864321 01223578
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
+|...|.+++|++++.+|++++.|++|+|||+.+++.+..+..|...+.+++|++++++|++++.|+.|++|++++++..
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
..+..+...|.+++|++++++|++++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++
T Consensus 158 ~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
++.+..+.+|...|.+++|++++++|++++.|+.|+|||+++++++..+..|...|.+++|++ ++.+|++++.||.|+|
T Consensus 238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHI 316 (321)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred EEc
Q 005096 382 WLV 384 (715)
Q Consensus 382 wd~ 384 (715)
||+
T Consensus 317 wd~ 319 (321)
T 3ow8_A 317 YDC 319 (321)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-39 Score=344.20 Aligned_cols=291 Identities=16% Similarity=0.234 Sum_probs=265.6
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.....+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+..|...|.+++|++++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCe-----------eEEEecccCC--ceEEE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQ-----------EERSLTGHGW--DVKSV 276 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~-----------~~~~l~~~~~--~I~si 276 (715)
+.+++.+..+. +...|.+++|++++++|++++.+ +.|++||+++.. .+..+..+.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99998888876 88899999999999999999999 999999986543 2334444555 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~ 355 (715)
+|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +..
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 9999999999999999999999998 78888888899999999999999999999999999999999999988888 788
Q ss_pred CeEEEEEccCCCCEEEEEeCCC--------------cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 356 DVTALAWHPFHEEYFVSGSLDG--------------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG--------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
.+.+++|++ ++.++++++.++ .|++||+.+...... +..|...|++++|++++++|++++.||.
T Consensus 261 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 261 PLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR-VQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp CEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh-eecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 899999999 888999998888 899999988765544 4568999999999999999999999999
Q ss_pred EEEEecCC
Q 005096 422 TKFWCRNR 429 (715)
Q Consensus 422 I~iWdl~~ 429 (715)
|+||+++.
T Consensus 339 v~iw~~~~ 346 (369)
T 3zwl_B 339 IRLHHFEK 346 (369)
T ss_dssp EEEEEECH
T ss_pred EEEEECcc
Confidence 99999965
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-39 Score=370.76 Aligned_cols=282 Identities=27% Similarity=0.494 Sum_probs=259.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...+.+|...|++++|++++++|++++.|+.|++||... +.+..+..|...|.+++|++++++|++++.|+.|++||.
T Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~- 373 (577)
T 2ymu_A 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR- 373 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-
Confidence 346789999999999999999999999999999999765 456678899999999999999999999999999999996
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+++.+..+..|...|.+++|++|+++|++++.|+.|++||. +++.+..+.+|...|++++|++|+++|++++.|+.|++
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence 45677778899999999999999999999999999999996 56778888999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||+ +++.+..+..|...|++++|++|+++|++++.|+.|+|||. +++.+..+.+|...|++|+|++ ++++|++++.|
T Consensus 453 w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d 529 (577)
T 2ymu_A 453 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 529 (577)
T ss_dssp EET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETT
T ss_pred EEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECc
Confidence 996 46788888999999999999999999999999999999995 6889999999999999999999 88999999999
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|.|+|||.. ......+.+|.+.|++++|++|+++|++++.|++|++||
T Consensus 530 g~v~lwd~~--~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 530 KTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEeCC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999963 344566678999999999999999999999999999997
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6e-40 Score=361.64 Aligned_cols=287 Identities=24% Similarity=0.472 Sum_probs=260.5
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ...++.+...+.+|++|+....+ ....+
T Consensus 104 l~gh~~~V~~~~~~p-----~~~~l~s~s~Dg~i~vwd~~~~~--------------------------------~~~~l 146 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHP-----VFSVMVSASEDATIKVWDYETGD--------------------------------FERTL 146 (410)
T ss_dssp EECCSSCEEEEEECS-----SSSEEEEEESSSCEEEEETTTCC--------------------------------CCEEE
T ss_pred ecccCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--------------------------------EEEEE
Confidence 455665555544433 23466777788999999875432 01256
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|.+.|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||+.++..
T Consensus 147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226 (410)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-------------------
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------------------- 281 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd------------------- 281 (715)
+..+..|...|.++++++++.+|++++.|++|++||+.+.+....+..|...|.+++|+++
T Consensus 227 ~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 1vyh_C 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306 (410)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 282 -KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 282 -g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+.+|++++.|+.|+|||+++++++..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+..|...|+++
T Consensus 307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+|++ ++.+|++|+.||+|+||+++
T Consensus 387 ~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 387 DFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECS-SSSCEEEEETTSEEEEEC--
T ss_pred EEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 9999 88899999999999999863
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-39 Score=353.09 Aligned_cols=290 Identities=17% Similarity=0.226 Sum_probs=262.2
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eEEEEeccCCCEEEEEEcCC----C---CEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHN----D---NWMV 202 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~------~~~~l~~h~~~V~~l~~spd----g---~~L~ 202 (715)
+...+.+|.+.|++|+|++ ++|++++.||.|+|||+.+.+ .+..+..|...|++++|+++ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4567889999999999998 799999999999999999887 78889999999999999999 9 9999
Q ss_pred EEeCCCcEEEEeCCCCce-----eeeecCC-----CCCeEEEEEe----cCCCE-EEEEECCCcEEEEECCC------Ce
Q 005096 203 SGDDGGAIKYWQNNMNNV-----KANKSAH-----KESVRDLSFC----RTDLK-FCSCSDDTTVKVWDFAR------CQ 261 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~-----~~~~~~h-----~~~I~~l~~s----pd~~~-Las~s~Dg~V~iwdl~~------~~ 261 (715)
+++.|+.|++||+.+++. ...+..| ...|.+++|+ +++++ |++++.|+.|++||+++ .+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999988876 7777788 5999999999 99999 99999999999999987 55
Q ss_pred eEE-----Ee-------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc---C---CCceEEEEEcCC
Q 005096 262 EER-----SL-------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---H---KNMVLCVKWNQN 323 (715)
Q Consensus 262 ~~~-----~l-------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~---~---~~~I~sl~~spd 323 (715)
.+. .+ ..|...|.+++|++++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 555 66 4478899999999999 999999999999999999999999988 8 899999999999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeEEEEeec-------------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 324 GNWVLTASKD---QIIKLYDIRAMKELESFRG-------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 324 g~~Lasgs~d---g~I~iwDl~t~~~~~~~~~-------------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+++|++++.| +.|++||+++++.+..+.. |...|.+++|++ ++.+|++++.||.|+|||+++.
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999 9999999999999999998 999999999999 8899999999999999999887
Q ss_pred CceEEEee-----cc---------------CCCEEEEEEcCCC----------CEEEEEECCCeEEEEecCC
Q 005096 388 TPQVEIHN-----VH---------------DNTVWDLAWHPIG----------YLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 388 ~~~~~~~~-----~h---------------~~~V~~l~~spdg----------~~L~sgs~Dg~I~iWdl~~ 429 (715)
.....+.. .| ...|++++|++++ .+|++++.||.|+||+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 66555441 46 8899999999998 7999999999999999864
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-38 Score=336.07 Aligned_cols=282 Identities=18% Similarity=0.303 Sum_probs=256.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---EEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~---~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..+|...|++++|++++++|++++ ||.|+|||+.+.+. ...+. .|...|.+++|++++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999999 99999999987653 33333 7889999999999999999999999999999
Q ss_pred CCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 215 NNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 215 ~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+++++ ....+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 99876 5667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.|++||+++++.+..+. +...+.+++|++++++|++++.|+.|++||+++.+. ..+..|...|.+++|++ ++++|++
T Consensus 206 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~ 282 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVS 282 (337)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEE
T ss_pred cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEE
Confidence 99999999998887775 678899999999999999999999999999998765 46678999999999999 8899999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++.||.|++||+.+...... ..|...|++++|++++++|++++.||.|++|++
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETTSEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEE--ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999988776533 347889999999999999999999999999997
No 24
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.8e-39 Score=345.21 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=255.2
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
..|.+.|++++|++++++|++++.|+.|+|||+.+.+ .+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4589999999999999999999999999999999887 88889999999999999999999999999999999999888
Q ss_pred ceeee--ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----EEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 219 NVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 219 ~~~~~--~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~----~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+.... +..|...|.+++|++++++|++++.|+.|++||++..+. ......|...|.+++|++++++|++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 64433 367889999999999999999999999999999987652 233356789999999999999999999999
Q ss_pred cEEEEECC------------------CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 293 LVKLWDAK------------------SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 293 ~I~iwDl~------------------s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
.|++||++ +++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 99999954 678888888899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC--CCc-------------------------------e-------EEEe
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH--ETP-------------------------------Q-------VEIH 394 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~--~~~-------------------------------~-------~~~~ 394 (715)
..|.+++|++ ++.+|+++ .|+.|++|+++. +.. . ..+.
T Consensus 245 ~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 9999999999 77777777 899999999977 210 0 1223
Q ss_pred eccCCCEEEEEEc-CCC---CEEEEEECCCeEEEEecCC
Q 005096 395 NVHDNTVWDLAWH-PIG---YLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 395 ~~h~~~V~~l~~s-pdg---~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+|...|++++|+ +++ .+|++++.||.|+||+++.
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 4799999999976 566 9999999999999999854
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.7e-38 Score=358.06 Aligned_cols=311 Identities=26% Similarity=0.431 Sum_probs=271.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...+.+|...|++++|++++++|++++.|+.|++||.. ++....+.+|...|.+++|++++++|++++.|+.|++||++
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 34678899999999999999999999999999999964 57788899999999999999999999999999999999987
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
... ...+..|...|.+++|++++++|++++.|+.|++||. +++.+..+..|...|++++|++++++|++++.|+.|++
T Consensus 334 ~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 334 GQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp SCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 554 4566789999999999999999999999999999995 56778888899999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||. +++.+..+..|...|++++|++|+++|++++.|+.|++||+ +++.+..+..|...|++++|++ ++++|++++.|
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d 488 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 488 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETT
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCC
Confidence 995 57788888999999999999999999999999999999996 5788899999999999999999 89999999999
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeec
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGR 456 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 456 (715)
+.|+|||.. ......+.+|...|++++|++|+++|++++.||.|+|||++ ++.. ....++......+.+.
T Consensus 489 ~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~~~~------~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 489 KTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLL------QTLTGHSSSVWGVAFS 558 (577)
T ss_dssp SEEEEEETT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEE------EEEECCSSCEEEEEEC
T ss_pred CEEEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--CCEE------EEEcCCCCCEEEEEEc
Confidence 999999963 33455667899999999999999999999999999999963 2211 1122344455555555
Q ss_pred CCCCccC
Q 005096 457 MPGNFPL 463 (715)
Q Consensus 457 ~~~~~~~ 463 (715)
.++.+++
T Consensus 559 ~dg~~l~ 565 (577)
T 2ymu_A 559 PDGQTIA 565 (577)
T ss_dssp TTSSCEE
T ss_pred CCCCEEE
Confidence 5555544
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-38 Score=373.37 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=254.3
Q ss_pred EEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-----ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~-----~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
+...+++|.+.|++|+|++++ ++|++|+.|++|+|||+.+. .....+.+|...|.+++|++++++|++|+.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445688999999999999875 79999999999999998763 346778999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEEEcCCC--CE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTK--SL 284 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~~spdg--~~ 284 (715)
|+|||+.++.....+..|...|.+++|++++++|++++.|++|+|||+......... .+|...|.+++|++++ .+
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999998665433332 3578889999999986 58
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
|++++.|++|+|||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+.. ...|.+++|++
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp 612 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSP 612 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999887764 56799999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCceEEEeec------------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 365 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 365 ~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------------------h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++.+|++++ |+.|+|||+++......+... +...|++++|++|+++|++|+.||+|+||+
T Consensus 613 -~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 613 -NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp -SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 777777765 556999999887654433211 112478999999999999999999999999
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
+.+
T Consensus 691 i~~ 693 (694)
T 3dm0_A 691 IGR 693 (694)
T ss_dssp C--
T ss_pred ccC
Confidence 853
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.7e-39 Score=345.15 Aligned_cols=288 Identities=19% Similarity=0.301 Sum_probs=255.4
Q ss_pred EecCCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEec-----cCCCEEEEEEcCC----CCEEEEE
Q 005096 138 TSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQA-----HDHAIRSMVWSHN----DNWMVSG 204 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~-----h~~~V~~l~~spd----g~~L~tg 204 (715)
....+|...|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+++ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 456799999999999984 55677777788999999998887777664 4578999999998 6799999
Q ss_pred eCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEEEcC
Q 005096 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHP 280 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~~sp 280 (715)
+.||.|+|||+.+++.+..+..|...|.+++|++ ++++|++++.|+.|++||+++++.+..+ ..|...|.+++|++
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 8999999999999999999999988888 67999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEec----------------------------cCCCceEEEEEcCCCCEEEEEEC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFH----------------------------GHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~----------------------------~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
++++|++++.|+.|++||+++++.+..+. .|...|.+++|+ +++|++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 99999999999999999999876544333 388999999998 789999999
Q ss_pred CCeEEEEECCCCe--------------EEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCc---eEEE
Q 005096 333 DQIIKLYDIRAMK--------------ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP---QVEI 393 (715)
Q Consensus 333 dg~I~iwDl~t~~--------------~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~---~~~~ 393 (715)
|+.|++||+++++ .+..+..|...|++++|++ + +.+|++++.||.|++||+++... ....
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 9999999998764 3788889999999999999 6 89999999999999999988753 3334
Q ss_pred eecc--CCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 394 HNVH--DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 394 ~~~h--~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..| ...|++++|++++++|++++.||.|+|||+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 4555 6899999999999999999999999999985
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=348.11 Aligned_cols=284 Identities=18% Similarity=0.326 Sum_probs=259.9
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|.+.|++++|++++++|++++.||.|+||| .+++.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 45788999999999999999999999999999 67788899999999999999999999999999999999999999998
Q ss_pred eeeecCCCCC---------------eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 221 KANKSAHKES---------------VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 221 ~~~~~~h~~~---------------I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+..+..+... +.+++|+++ ..+++++.|+.|++||+++.+.+..+..|...|.+++|++++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 8888777776 999999987 468899999999999999999988999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
++++.|+.|++||+++++.+..+..|...|.+++|++++ +|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~- 340 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ- 340 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-
Confidence 999999999999999999999999899999999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC-------------------ceEEEeeccCC--CEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHET-------------------PQVEIHNVHDN--TVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~-------------------~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
++.+|++++.||.|++||+++.. .....+..|.. .|++++|++++++|++++.||.|++
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 88999999999999999997665 13455556765 9999999999999999999999999
Q ss_pred EecC
Q 005096 425 WCRN 428 (715)
Q Consensus 425 Wdl~ 428 (715)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-40 Score=359.72 Aligned_cols=289 Identities=16% Similarity=0.324 Sum_probs=257.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~ 216 (715)
.|...|++++|++++++|++++.||.|+|||+.+ .+.+..+..|...|++++|+++ +++|++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999987 4588889999999999999998 8999999999999999998
Q ss_pred CCc------eee---eecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEeccc------CCceEEEEEcC
Q 005096 217 MNN------VKA---NKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------GWDVKSVDWHP 280 (715)
Q Consensus 217 ~~~------~~~---~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~------~~~I~si~~sp 280 (715)
+.+ ... .+..|...|.+++|+++ +.+|++++.|+.|++||+++.+.+..+..+ ...|.+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 322 23678899999999998 789999999999999999999998888876 78899999999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-ceeEEec-cCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 281 TK-SLLVSGGKDS---LVKLWDAKSG-RELCSFH-GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 281 dg-~~L~sgs~Dg---~I~iwDl~s~-~~~~~~~-~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
++ .+|++++.|+ .|++||++++ +.+..+. .|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 97 6899999998 9999999986 5667777 8999999999999 9999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE----------------------------------eeccCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI----------------------------------HNVHDN 399 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~----------------------------------~~~h~~ 399 (715)
...|++++|++++..+|++++.||.|+|||+......... ...|..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 9999999999954589999999999999999765432211 001566
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++++|++||++|++++.|+.|+||++..+
T Consensus 385 ~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 7889999999999999999999999998753
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=341.85 Aligned_cols=295 Identities=18% Similarity=0.309 Sum_probs=251.4
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEE-EEeC---CCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCC---CCEEEEEeC
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLI-TGSQ---SGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN---DNWMVSGDD 206 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~La-tgs~---dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spd---g~~L~tgs~ 206 (715)
++...+.+|...|++++|+++++.|+ +++. ||.|+|||+.+++..... ..|...|.+++|+++ +++|++++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 44556678999999999999997655 5555 899999999998776554 378999999999998 699999999
Q ss_pred CCcEEEEeCCCCc-eeeeecCCCCCeEEEEE------ecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCC----ceE
Q 005096 207 GGAIKYWQNNMNN-VKANKSAHKESVRDLSF------CRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW----DVK 274 (715)
Q Consensus 207 dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~------spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~----~I~ 274 (715)
||.|++||+.+++ ....+..|...|.+++| ++++++|++++.|+.|++||+++.+ .+..+..+.. .|.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999887 78888899999999965 6789999999999999999998876 5666655444 788
Q ss_pred EEE----EcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEE
Q 005096 275 SVD----WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 275 si~----~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp---dg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
+++ |++++++|++++.|+.|++||+++++.+.. ..+...|.+++|++ ++++|++++.|+.|++||+++++.+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 888 788999999999999999999999887544 45788999999999 9999999999999999999987765
Q ss_pred EEee-----cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc------------------eEEEeeccCCCEEEE
Q 005096 348 ESFR-----GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------------------QVEIHNVHDNTVWDL 404 (715)
Q Consensus 348 ~~~~-----~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~------------------~~~~~~~h~~~V~~l 404 (715)
..+. .|...|++++|++++..+|++++.||.|++||++.... .......|...|+++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 5554 89999999999994444899999999999999976432 345566789999999
Q ss_pred EEcCCCCEEE-EEECCCeEEEEecCCC
Q 005096 405 AWHPIGYLLC-SGSNDHTTKFWCRNRP 430 (715)
Q Consensus 405 ~~spdg~~L~-sgs~Dg~I~iWdl~~~ 430 (715)
+|++++.+|+ +++.||.|+||++.+.
T Consensus 328 ~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 328 DWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999999888 8999999999999754
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-38 Score=344.17 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=245.5
Q ss_pred EEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~sp-dg~~L~tgs~dg~I~ 211 (715)
+...+.+|...|++++|++++ ++|++|+.||.|+|||+.+.+....+. +|...|.+++|++ ++++|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 344778999999999999999 999999999999999999988887776 5999999999999 679999999999999
Q ss_pred EEeCCCCceeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEE
Q 005096 212 YWQNNMNNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVS 287 (715)
Q Consensus 212 iwd~~~~~~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~s 287 (715)
+||++... ...+. .+...|.+++|++++++|++++.|+.|++||+ +++.+..+..|...|.+++|+++++ +|++
T Consensus 145 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred EEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence 99999644 33333 34478999999999999999999999999999 5678888899999999999999999 9999
Q ss_pred EeCCCcEEEEECCC----CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCC--------
Q 005096 288 GGKDSLVKLWDAKS----GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------- 354 (715)
Q Consensus 288 gs~Dg~I~iwDl~s----~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------- 354 (715)
++.|+.|++||+++ ++.+..+ .|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 99999999999997 5566666 5899999999999 99999999999999999999988777766443
Q ss_pred ---------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-cCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 355 ---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 355 ---------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
..+..++|++ ++.+ +++.|+.|+|||+.+...+..+... |...+.+++|++++++|++++ |+.|+|
T Consensus 302 ~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp CCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred ceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 2334455555 3333 6678999999999888766555432 467788889999999999997 999999
Q ss_pred EecCC
Q 005096 425 WCRNR 429 (715)
Q Consensus 425 Wdl~~ 429 (715)
||++.
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99864
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=326.65 Aligned_cols=286 Identities=19% Similarity=0.301 Sum_probs=257.0
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+...+.+|.+.|++++| +++++|++++.||.|+|||+.+.+....+..|...|.+++|++++++|++++.|+.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 345678999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeC
Q 005096 215 NNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 290 (715)
Q Consensus 215 ~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~ 290 (715)
+... +....+..|...|.+++| ++++|++++.|+.|++|| ..+.+..+..|...|.+++|++ ++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 8764 456677889999999999 678999999999999999 6678888889999999999988 8999999999
Q ss_pred CCcEEEEECCCCceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 291 DSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
|+.|++|| ..+.+..+.. +...|.+++|++++. |++++.|+.|++||+++++.+..+..|...|++++|++ ++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-C
Confidence 99999999 4556667766 889999999999988 99999999999999999999999999999999999999 44 5
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|++++.||.|++||+++...... ...|...|++++|+++++ |++++.||.|++|+++....
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQV-ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEE-EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred EEEEecCCEEEEEECCCCceeEE-EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 88999999999999988765544 456888999999999998 66799999999999976443
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.5e-38 Score=335.21 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=251.9
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
..+.+|...+.+..+.. ...++.+...+++|++|+....+ ...
T Consensus 49 ~~l~gH~~~v~~~~~s~-----d~~~l~s~s~Dg~v~iWd~~~~~--------------------------------~~~ 91 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGT-----DSRLLLSASQDGKLIIWDSYTTN--------------------------------KVH 91 (340)
T ss_dssp EEECCCSSCEEEEEECT-----TSSEEEEEETTTEEEEEETTTCC--------------------------------EEE
T ss_pred eeecCCCCceEEEEECC-----CCCEEEEEeCCCcEEEEECCCCC--------------------------------cce
Confidence 34566766665544432 23466677788999999864322 112
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+..|...|.+++|++++++|++|+.|+.|+|||+.+. +....+.+|...|.++.|++++ .|++++.|+.|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEE
Confidence 35578899999999999999999999999999998875 4567788999999999999776 588999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+.+|...|++++|++++++|++++.|++|
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 295 KLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
+|||+++++.+..+.. +...|++++|++++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|++ ++.+|++
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s 329 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEE
Confidence 9999999888777652 234799999999999999999999999999999999999999999999999999 8899999
Q ss_pred EeCCCcEEEEE
Q 005096 373 GSLDGSIFHWL 383 (715)
Q Consensus 373 gs~DG~I~iwd 383 (715)
|+.|+.|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-37 Score=341.97 Aligned_cols=283 Identities=12% Similarity=0.172 Sum_probs=247.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
..+....|++++++|++++.||.|+|||+.+++....+..|...|++++|++++++|++++.|+.|++||+.+++....+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 34555678999999999999999999999999998888899999999999999999999999999999999999988899
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc---cC---------------------CceEEEEEcC
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HG---------------------WDVKSVDWHP 280 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~---~~---------------------~~I~si~~sp 280 (715)
..|...|.+++|++++++|++++.|++|++||+++++.+..+.. +. ..+.+++|++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999998888864 23 3444555678
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE-EEEeec-CCCC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKE-LESFRG-HRKD 356 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~~~-~~~~~~-h~~~ 356 (715)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.||.|++||+++++. +..+.. +...
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 99999999999999999999998877764 4788999999999998 999999999999999998754 677776 6677
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--------eEEEeeccCCCEEEEEEcCCCC---EEEEEECCCeEEEE
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIGY---LLCSGSNDHTTKFW 425 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg~---~L~sgs~Dg~I~iW 425 (715)
|.++.+. ++.+|++++.|+.|++||+..... .......|.+.|.+++|++++. .|++++.+|.+.+|
T Consensus 338 v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 338 INNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred ceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 8888665 578999999999999999976321 1234456888999999999998 78888889999999
Q ss_pred ecCC
Q 005096 426 CRNR 429 (715)
Q Consensus 426 dl~~ 429 (715)
+++.
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9864
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-37 Score=326.32 Aligned_cols=254 Identities=20% Similarity=0.370 Sum_probs=231.9
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iw 255 (715)
.+..+++.+|.+.|++++|++++++|++++.||.|+|||++++..+..+..|...|.+++|++++++|++++.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcC-CCCEEEEEECC
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD 333 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~d 333 (715)
|+++++.+..+.+|...|++++|++++++|++++.|++|+|||++++ .....+.+|...|.+++|++ ++.+|++++.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987 44567889999999999999 67899999999
Q ss_pred CeEEEEECCCCeEEEEee-cCCCCeEEEEEccC-CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 334 QIIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~-~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
+.|+|||+++.+....+. .+...|..+.|++. ++.+|++++.|++|+|||+++.... ..+.+|...|++++|++++.
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-eeeCCCCCCEEEEEECCCCC
Confidence 999999998877666554 56688999999874 5679999999999999999887654 44557999999999999999
Q ss_pred EEEEEECCCeEEEEecCCC
Q 005096 412 LLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~ 430 (715)
+|++++.||+|+|||+...
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 9999999999999998654
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=335.07 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=217.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE----EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~----l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.|...|++++|++++ .|++|+.||+|+|||+++++.+.. +.+|.+.|++|+|++++++|++|+.|++|+|||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 366789999999985 788999999999999998775443 458999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCC-CCEEEEEeCCCc
Q 005096 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPT-KSLLVSGGKDSL 293 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spd-g~~L~sgs~Dg~ 293 (715)
++.+..+.+|...|.+++|++++ .+|++++.|++|+|||+++++....+. .+...+.+++|+++ +++|++|+.|+.
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 99999999999999999999987 578999999999999999988887764 35567899999985 568899999999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
|+|||+++++++..+.+|...|++++|++++ ++|++++.|++|+|||+++++.+ .+.+|...|++|+|+|++..+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEE
Confidence 9999999999999999999999999999987 57999999999999999988755 578899999999999977788999
Q ss_pred EeCCCcEEEEEcCCCC
Q 005096 373 GSLDGSIFHWLVGHET 388 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~ 388 (715)
++.|++|++|++.++.
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999997653
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=339.49 Aligned_cols=286 Identities=15% Similarity=0.273 Sum_probs=254.6
Q ss_pred CCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeC----CCCc------eEEEEec----------cCCCEEEEEEcCCCC
Q 005096 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNG----QSFN------FEMILQA----------HDHAIRSMVWSHNDN 199 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~----~~~~------~~~~l~~----------h~~~V~~l~~spdg~ 199 (715)
..|.+.|++++|+++++ +||+++.||.|+|||+ .+++ ....+.. |...|++++|+++++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8877 4555554 678999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCc-------
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD------- 272 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~------- 272 (715)
+|++++.||.|+||| .+++....+..|...|.+++|++++++|++++.|+.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 667778888899999999999999999999999999999999999999888877766
Q ss_pred --------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 273 --------VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 273 --------I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
+.+++|+++ ..+++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999987 46888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
+.+..+..|...|.+++|++ ++ +|++++.|+.|++||+++..... ....|...|++++|++++.+|++++.||.|++
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEE-EEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeE-ecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 99999999999999999999 55 99999999999999998776544 44468889999999999999999999999999
Q ss_pred EecCCCC
Q 005096 425 WCRNRPG 431 (715)
Q Consensus 425 Wdl~~~~ 431 (715)
|++....
T Consensus 357 ~~~~~~~ 363 (425)
T 1r5m_A 357 YDLKKLN 363 (425)
T ss_dssp EECHHHH
T ss_pred EECCCCc
Confidence 9996543
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6e-38 Score=344.05 Aligned_cols=285 Identities=17% Similarity=0.248 Sum_probs=248.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.+++++|++++++|++++.||.|++||+.+.+....+..| ..+....|++++++|++++.|+.|+|||+++++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3458999999999999999999999999987766666555 445555789999999999999999999999999888888
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.|...|.+++|++++++|++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEecc---CCCceE---------------------EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEE
Q 005096 306 CSFHG---HKNMVL---------------------CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTAL 360 (715)
Q Consensus 306 ~~~~~---~~~~I~---------------------sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l 360 (715)
..+.. +...|. +++|++++++|++++.||.|++||+++++.+..+. .|...|+++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 88864 333444 45557899999999999999999999998877765 478899999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCce-EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQ-VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+|++++..+|++++.||.|++||+++.... ..+...|...|+++.|. ++.+|++++.|+.|++|++.....
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCC
Confidence 999944449999999999999999987664 44444477788888665 788999999999999999977433
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=350.69 Aligned_cols=284 Identities=15% Similarity=0.194 Sum_probs=236.6
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
..+.+.|++++|++++++|++++.|+.|+|||+.++ +.+..+..|...|.+++|++++++|++++.|+.|+|||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 346779999999999999999999999999999988 778888999999999999999999999999999999999987
Q ss_pred c---eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecc-cCCceEEEEEcCCCCEEEEEeCC
Q 005096 219 N---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTG-HGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 219 ~---~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~-~~~~I~si~~spdg~~L~sgs~D 291 (715)
+ ....+..|...|.+++|++++++|++++.|+.|++||+++.+ ....+.. |...|.+++|++++++|++++.|
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 6 566677899999999999999999999999999999998876 3677777 99999999999999999999999
Q ss_pred CcEEEEECCC------------------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE----EEE
Q 005096 292 SLVKLWDAKS------------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----LES 349 (715)
Q Consensus 292 g~I~iwDl~s------------------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~----~~~ 349 (715)
+.|++||+++ ++.+..+ .|...|++++|++++++|++++.|+.|+|||+++++. +..
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 9999999852 4455556 7899999999999999999999999999999999887 888
Q ss_pred eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC--------------------------------------ceE
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------------------------------------PQV 391 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--------------------------------------~~~ 391 (715)
+..|...|.+++|++ ++.+|++++.++.+ +|+..... ...
T Consensus 247 ~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 247 VKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp EECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred ecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 899999999999999 78888888766655 66654211 000
Q ss_pred E-------------EeeccCCCEEEEEEcCCC-C---EEEEEECCCeEEEEec
Q 005096 392 E-------------IHNVHDNTVWDLAWHPIG-Y---LLCSGSNDHTTKFWCR 427 (715)
Q Consensus 392 ~-------------~~~~h~~~V~~l~~spdg-~---~L~sgs~Dg~I~iWdl 427 (715)
. +...|.+.|+++++.++. . .|+|++.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 112388999999976543 3 6999999999999985
No 40
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-36 Score=348.16 Aligned_cols=344 Identities=16% Similarity=0.249 Sum_probs=270.7
Q ss_pred EeeehhhheeeEEEEEeccCC------CccccccCchhhhcCccceeecCCCCCceee---------------eEEEEec
Q 005096 82 VDYTSTVVRYMQIRMWQRDSR------DRTVLQATPAAAIDMLPTVAYTDNPSTSFAA---------------KFVHTSL 140 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~l 140 (715)
..++.+...++.|++|+.... +..... ........+..+.+.......+.. .-....+
T Consensus 78 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~ 156 (615)
T 1pgu_A 78 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS-EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV 156 (615)
T ss_dssp CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE-EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred CCEEEEecCCCEEEEEeCCCCcccccccccccc-hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceee
Confidence 345666667889999998533 111111 111122233334444333221111 1134567
Q ss_pred CCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCC---CEEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005096 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHN-DNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~---~V~~l~~spd-g~~L~tgs~dg~I~iwd~ 215 (715)
.+|...|++++|+++++ +|++++.|+.|+|||+.+++.+..+..|.. .|.+++|+++ +++|++++.|+.|++||+
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 89999999999999998 899999999999999999999999999999 9999999999 999999999999999999
Q ss_pred CCCceeeee-c---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-----------------------
Q 005096 216 NMNNVKANK-S---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------------------- 268 (715)
Q Consensus 216 ~~~~~~~~~-~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~----------------------- 268 (715)
.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence 999988888 6 899999999999 999999999999999999987655443322
Q ss_pred ----------------------cCCceE---------------------------------EEEEcCC------------
Q 005096 269 ----------------------HGWDVK---------------------------------SVDWHPT------------ 281 (715)
Q Consensus 269 ----------------------~~~~I~---------------------------------si~~spd------------ 281 (715)
|...|. +++| ++
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC
Confidence 222222 2222 11
Q ss_pred -------------------------------------------------------------CCEEEEEeC-CCcEEEEEC
Q 005096 282 -------------------------------------------------------------KSLLVSGGK-DSLVKLWDA 299 (715)
Q Consensus 282 -------------------------------------------------------------g~~L~sgs~-Dg~I~iwDl 299 (715)
+++|++++. |+.|++||+
T Consensus 395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence 334444444 555566665
Q ss_pred CCCcee-EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccC---------CCC
Q 005096 300 KSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPF---------HEE 368 (715)
Q Consensus 300 ~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~---------~~~ 368 (715)
.+++.. ..+..|...|++++|++++++|++++.|+.|+|||+++++.+..+.. |...|++++|++. ++.
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 554433 44566888999999999999999999999999999999999999988 9999999999983 688
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+|++++.||.|++||+.+.......+..|...|++++|++++. |++++.||.|++|+++.
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999988666777888999999999999999 99999999999999864
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-36 Score=324.01 Aligned_cols=291 Identities=18% Similarity=0.329 Sum_probs=249.2
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+....+... ...++.+...+.+|++|+....+.. .......+
T Consensus 13 l~gH~~~V~~l~~~~~----~~~~l~s~s~D~~v~~W~~~~~~~~---------------------------~~~~~~~~ 61 (319)
T 3frx_A 13 LEGHNGWVTSLATSAG----QPNLLLSASRDKTLISWKLTGDDQK---------------------------FGVPVRSF 61 (319)
T ss_dssp ECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEEEEEETTE---------------------------EEEEEEEE
T ss_pred EccccceEEEEEccCC----CccEEEEecCCccEEEecCCCCCcc---------------------------ccccceEE
Confidence 5567666655443221 1235667788899999987532210 01123467
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||++. ..
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~ 140 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QC 140 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CE
T ss_pred eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999974 56
Q ss_pred eeeecCCCCCeEEEEEecC------CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 221 KANKSAHKESVRDLSFCRT------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd------~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+..+..|...|.+++|+++ +..|++++.|++|++||+++.+....+.+|...|.+++|++++++|++++.|+.|
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 6677889999999999885 4589999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--------CCCCeEEEEEccCC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--------HRKDVTALAWHPFH 366 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--------h~~~V~~l~~sp~~ 366 (715)
+|||+++++.+..+.. ...|.+++|++++.+|++++. +.|++|++.....+..+.. +...+.+++|++ +
T Consensus 221 ~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d 297 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-D 297 (319)
T ss_dssp EEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-T
T ss_pred EEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-C
Confidence 9999999999888874 567999999999999998875 5699999998877776642 456799999999 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 005096 367 EEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~ 386 (715)
+++|++|+.||.|+|||+.+
T Consensus 298 g~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 298 GQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SSEEEEEETTSCEEEEEEEE
T ss_pred CCEEEEeecCceEEEEEEee
Confidence 99999999999999999864
No 42
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-36 Score=334.75 Aligned_cols=279 Identities=21% Similarity=0.367 Sum_probs=258.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|.+.|++++|+ +++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||+.++
T Consensus 154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 567899999999997 6699999999999999999999999999999999999995 678999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+....+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++||
T Consensus 230 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305 (445)
T ss_dssp CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence 999999999999999999 7889999999999999999999999999999999999999 689999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCeEEEEEccCCCCEEEEEeC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~---h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+++++.+..+..|...+.++.++ +++|++++.||.|++||+++++.+..+.. |...|++++|+ +++|++++.
T Consensus 306 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~ 380 (445)
T 2ovr_B 306 VETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSD 380 (445)
T ss_dssp TTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEET
T ss_pred CCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeC
Confidence 99999999999999999998884 67999999999999999999999999986 88899999994 589999999
Q ss_pred CCcEEEEEcCCCCceEEEe----eccCCCEEEEEEcCCCCEEEEEECCCe----EEEEecCCC
Q 005096 376 DGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCSGSNDHT----TKFWCRNRP 430 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~L~sgs~Dg~----I~iWdl~~~ 430 (715)
||.|++||+++++....+. ..|.+.|++++|++++.+|++++.||+ |.|||++.+
T Consensus 381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999887666553 357889999999999999999999998 999999764
No 43
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=343.36 Aligned_cols=290 Identities=13% Similarity=0.196 Sum_probs=245.3
Q ss_pred eEEEEecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---Cc---eEEEEeccCCCEEEEEEcCCCCEEEEEeC
Q 005096 134 KFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FN---FEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~---~~---~~~~l~~h~~~V~~l~~spdg~~L~tgs~ 206 (715)
+.+.+...+|.+.|++++|++ ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|++++++|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 444444489999999999999 999999999999999999766 32 23333 48999999999999999999999
Q ss_pred CCcEEEEeCC---CCceeeeec----------C--CCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCeeEEEecc-
Q 005096 207 GGAIKYWQNN---MNNVKANKS----------A--HKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (715)
Q Consensus 207 dg~I~iwd~~---~~~~~~~~~----------~--h~~~I~~l~--~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~- 268 (715)
||.|+|||++ .++...... . +...+.++. +++++.+|++++.|+.|++||+++++.+..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 9999999985 443333222 1 456677777 457889999999999999999999999999988
Q ss_pred -cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEc----CCCCEEEEEECCCeEEEEECC
Q 005096 269 -HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWN----QNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 269 -~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~s----pdg~~Lasgs~dg~I~iwDl~ 342 (715)
|...|++++|++++++|++++.|+.|+|||+++++.+..+. .+...|++++|+ +++.+|++++.|+.|+|||++
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 88999999999999999999999999999999999988886 678899999665 467899999999999999999
Q ss_pred CCeEEEEeecC--------------------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-
Q 005096 343 AMKELESFRGH--------------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN- 395 (715)
Q Consensus 343 t~~~~~~~~~h--------------------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~- 395 (715)
+++.+..+..| ...|++++|+ ++.+|++++.|+.|++||+.+......+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 99988887744 4457888888 468999999999999999988765544432
Q ss_pred -----------------------------------ccCCCEEEEEEcCC--CCEEEEEECCCeEEEEe
Q 005096 396 -----------------------------------VHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 396 -----------------------------------~h~~~V~~l~~spd--g~~L~sgs~Dg~I~iWd 426 (715)
.|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 28899999999998 78999999999999995
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.8e-38 Score=347.11 Aligned_cols=289 Identities=18% Similarity=0.231 Sum_probs=239.5
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEE--EEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEM--ILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~--~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd 214 (715)
....|...|+||+|+| ++++||+|+.||+|+|||+.+.+... .+.+|.+.|++|+|+| ++++|++++.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3457889999999998 56799999999999999998766444 4567999999999997 689999999999999999
Q ss_pred CCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCC
Q 005096 215 NNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKD 291 (715)
Q Consensus 215 ~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~D 291 (715)
++++....... .+...+.+++|++++++|++++.||.|++||++. +.+..+.+|...|++++|+++++ +|++++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 98775544433 3345678999999999999999999999999864 56777889999999999999876 78899999
Q ss_pred CcEEEEECCCCceeEE---eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC------CeEEEEE
Q 005096 292 SLVKLWDAKSGRELCS---FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAW 362 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~---~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------~V~~l~~ 362 (715)
+.|+|||+++.+.... ..+|...|++++|++++++|++++.|+.|+|||+++++....+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999998765433 356889999999999999999999999999999999988877765543 2345567
Q ss_pred ccCCCCEEEEEe------------CCCcEEEEEcCCCCceEEEeeccCCCEEEE-EEcCCCCEEEEEECCCeEEEEecCC
Q 005096 363 HPFHEEYFVSGS------------LDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 363 sp~~~~~l~sgs------------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++ ++.+++++. .++.|++||..++..+..+...|...|.++ +|+++|.+|++|+ |+.|+||+++.
T Consensus 353 ~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 353 HP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred cC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 76 445555443 345799999999888777777888889887 6999999999876 88999999865
Q ss_pred C
Q 005096 430 P 430 (715)
Q Consensus 430 ~ 430 (715)
.
T Consensus 431 g 431 (435)
T 4e54_B 431 A 431 (435)
T ss_dssp -
T ss_pred C
Confidence 3
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-36 Score=321.38 Aligned_cols=284 Identities=15% Similarity=0.239 Sum_probs=253.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
|.+.|.+++|++||++|+++..++.+.+|+............|...|++++|++++++|++++ ||.|+|||+.++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888888887766655666668999999999999999999998 9999999998765332
Q ss_pred ee-----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 223 NK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 223 ~~-----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
.+ ..|...|.+++|++++++|++++.|+.|++||+++.+ ....+..|...|.+++|++++++|++++.|+.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 22 2688999999999999999999999999999998876 5667788899999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +...+.+++|++ ++++|++++.
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~ 244 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGME 244 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEET
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999888875 778899999999 8899999999
Q ss_pred CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|+.|++||+++... .....|...|++++|++++++|++++.||.|++|+++...
T Consensus 245 ~~~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 245 SSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp TSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCcEEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 99999999987654 3445689999999999999999999999999999997644
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-36 Score=328.77 Aligned_cols=286 Identities=18% Similarity=0.301 Sum_probs=250.6
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...+.+..+.. ...++.+...+.+|++|+....+ ....
T Consensus 59 ~l~gH~~~V~~~~~s~-----d~~~l~s~s~Dg~v~vWd~~~~~--------------------------------~~~~ 101 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCK-----DKRRIVSSSQDGKVIVWDSFTTN--------------------------------KEHA 101 (354)
T ss_dssp EEECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCC--------------------------------EEEE
T ss_pred EecCCCCeEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCC--------------------------------cceE
Confidence 4566766666555433 23456677788999999854322 1123
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
+..|...|.+++|++++++|++++.|+.|++|++... .....+..|...|.+++|+++++.|++++.|++|+||
T Consensus 102 ~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lw 181 (354)
T 2pbi_B 102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181 (354)
T ss_dssp EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 4467888999999999999999999999999997643 3466778899999999999999999999999999999
Q ss_pred eCCCCceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
|+++++.+..+..|...|.+++|++ ++++|++++.|++|++||+++++.+..+..|...|++++|++++++|++++.|
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 9999999999999999999999987 46899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
++|+|||+++++.+..+..+ ...+.+++|++++++|++++.|+.|+|||+.+++.+..+.+|...|++++|++ ++.+
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~ 340 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTA 340 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSC
T ss_pred CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCE
Confidence 99999999998877776533 34789999999999999999999999999999999999999999999999999 8899
Q ss_pred EEEEeCCCcEEEEE
Q 005096 370 FVSGSLDGSIFHWL 383 (715)
Q Consensus 370 l~sgs~DG~I~iwd 383 (715)
|++++.|++|+||+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 99999999999996
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-38 Score=343.38 Aligned_cols=289 Identities=21% Similarity=0.389 Sum_probs=254.6
Q ss_pred CCccEEEEEEcCCCC-EEEEE----------eCCCeEEEEeCCCCce---EEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 143 NRCSINRVLWTPTGR-RLITG----------SQSGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latg----------s~dg~I~Iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
+...|.+++|+|+++ +|+++ +.|+.|+|||+.+.+. +.. ..|...|++++|++++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence 335688999999987 89999 8899999999998753 333 35889999999999999999999999
Q ss_pred cEEEEeCCC----CceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCe------eEEE---ecccCCceE
Q 005096 209 AIKYWQNNM----NNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ------EERS---LTGHGWDVK 274 (715)
Q Consensus 209 ~I~iwd~~~----~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~------~~~~---l~~~~~~I~ 274 (715)
.|+|||+.+ .+....+..|...|.+++|+++ +++|++++.|+.|++||+++.+ .... +..|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4577788899999999999998 8999999999999999998876 3322 356888999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEeccC------CCceEEEEEcCCC-CEEEEEECCC---eEEEEECCC
Q 005096 275 SVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRA 343 (715)
Q Consensus 275 si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~------~~~I~sl~~spdg-~~Lasgs~dg---~I~iwDl~t 343 (715)
+++|+++ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|++++ .+|++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 789999999999999999999998888766 7889999999987 6899999998 999999998
Q ss_pred C-eEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEEECCC
Q 005096 344 M-KELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDH 420 (715)
Q Consensus 344 ~-~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg 420 (715)
+ +.+..+. .|...|++++|++.++.+|++++.||.|++||+++...+. .+..|...|++++|++++ .+|++++.|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS-QFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE-EEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce-eecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 6 6677787 8999999999999788999999999999999998876554 445689999999999998 8999999999
Q ss_pred eEEEEecCCCCCc
Q 005096 421 TTKFWCRNRPGDT 433 (715)
Q Consensus 421 ~I~iWdl~~~~~~ 433 (715)
.|+||++......
T Consensus 329 ~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 329 KIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEEESCCCCCS
T ss_pred cEEEEEccCCCCC
Confidence 9999999765543
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-36 Score=331.74 Aligned_cols=288 Identities=21% Similarity=0.354 Sum_probs=251.9
Q ss_pred ecCCCCcc--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCS--INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~--I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+|... +.+++|+. ..|++++.|+.|+|||+.+++....+.. |...|++++|++++++|++++.||.|+|||+
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 34456554 56677775 4588899999999999999998888776 7889999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++++.+..+..|...|.+++| ++++|++++.|+.|++||++ ....+..+..|...|.+++|++++++|++++.|+.|
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 999999999999999999999 56799999999999999998 566778888999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGN-WVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~-~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++||+++++.+..+..|...|.+++|++++. +|++++ .|+.|++||+++++.+..+. +...|.+++|++ ++.+|+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~ 319 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIM 319 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEE
Confidence 9999999999999999999999999999764 555554 79999999999999988886 667899999999 778887
Q ss_pred EE--eCCCcEEEEEcCCCCceEE-EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 372 SG--SLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 372 sg--s~DG~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++ +.||.|+|||+.+...... ....|...|++++|++++.+|++++.||.|++|++.....
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred EEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 74 4899999999987644333 3457899999999999999999999999999999976443
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=326.68 Aligned_cols=281 Identities=20% Similarity=0.371 Sum_probs=233.7
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
..++.+...+.+|++|+...... ........+|...|++++|++++++|++
T Consensus 28 g~~las~~~D~~i~iw~~~~~~~-----------------------------~~~~~~~~~h~~~v~~~~~sp~g~~l~s 78 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGDSW-----------------------------ICKSVLSEGHQRTVRKVAWSPCGNYLAS 78 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEE-----------------------------EEEEEECSSCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCCcc-----------------------------eeeeeeccccCCcEEEEEECCCCCEEEE
Confidence 34566677788999998643210 0011234689999999999999999999
Q ss_pred EeCCCeEEEEeCCCC--ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecCCCCCeEEEEE
Q 005096 162 GSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSF 236 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~I~~l~~ 236 (715)
|+.|++|+|||+.+. +.+..+.+|...|.+++|++++++|++++.|+.|+|||+.+.. .+..+..|...|.+++|
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 999999999998766 4577889999999999999999999999999999999998753 45667889999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG------------ 302 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~------------ 302 (715)
++++++|++++.|++|++||+++.+ ....+.+|...|++++|++++++|++++.|++|+|||+...
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 9999999999999999999998765 45678899999999999999999999999999999996321
Q ss_pred ---ceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------EEEEeecCCCCeEEEEEccCCCCE
Q 005096 303 ---RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 303 ---~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---------~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
+++..+.+ |...|.+++|++++.+|++++.|+.|++||.+... ......+|...|++|+|+|++..+
T Consensus 239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 23344444 78899999999999999999999999999987542 122345799999999999965679
Q ss_pred EEEEeCCCcEEEEEcCCCCceE
Q 005096 370 FVSGSLDGSIFHWLVGHETPQV 391 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~ 391 (715)
|++++.||+|++|++.+.+...
T Consensus 319 laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 319 LASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEETTSCEEEEEECC-----
T ss_pred EEEcCCCCcEEEEEecCCCCcc
Confidence 9999999999999998776543
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.9e-37 Score=331.44 Aligned_cols=250 Identities=20% Similarity=0.350 Sum_probs=213.3
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE----EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~----~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+|...|++++|+++++ +++++.||+|+|||+.+++.. ....+|...|++|+|++++++|++++.|+.|+|||++
T Consensus 91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 46888999999999985 667888999999999887643 3345799999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCC-CEEEEEeCCC
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTK-SLLVSGGKDS 292 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg-~~L~sgs~Dg 292 (715)
+++.+..+..|...|.+++|++++. +|++++.|++|++||+++++.+..+. .+...+.+++|+|++ .+|++++.|+
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 9999999999999999999999874 78999999999999999887765543 466789999999974 6899999999
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
.|+|||+++++.+..+..|...|++++|++++ ++|++++.|++|+|||+++++.+..+ +|...|++|+|+|.++.+|+
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 99999999999999999999999999999987 67999999999999999998877665 79999999999987889999
Q ss_pred EEeCCCcEEEEEcCCCCceEE
Q 005096 372 SGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~ 392 (715)
+++.||+|++|++........
T Consensus 329 s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp EEETTSCEEEEECC-------
T ss_pred EEcCCCeEEEEECCCCCcccc
Confidence 999999999999976654433
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.1e-36 Score=332.33 Aligned_cols=285 Identities=21% Similarity=0.360 Sum_probs=256.1
Q ss_pred EEecCCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I-~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+.+|...| +++.+ ++++|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34678898885 66666 56799999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECCCCee-----------------------EEEecccC
Q 005096 216 NMNNVKANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-----------------------ERSLTGHG 270 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~s--pd~~~Las~s~Dg~V~iwdl~~~~~-----------------------~~~l~~~~ 270 (715)
++++....+..|...|.+++|+ +++++|++++.|++|++||+.+... +..+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999998 4778999999999999999977642 44567788
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
..|.++. +++++|++++.|+.|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+
T Consensus 271 ~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 8888774 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
..|...|.+++|+ +.+|++++.||.|++||+++....... .+...+..++|++++.+|++++ ||.|++||++..
T Consensus 349 ~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 349 QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 9999999999996 589999999999999999887654444 3566788899999999999998 999999999764
Q ss_pred CC
Q 005096 431 GD 432 (715)
Q Consensus 431 ~~ 432 (715)
..
T Consensus 423 ~~ 424 (464)
T 3v7d_B 423 KL 424 (464)
T ss_dssp CE
T ss_pred cE
Confidence 43
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3e-36 Score=323.41 Aligned_cols=297 Identities=17% Similarity=0.272 Sum_probs=240.2
Q ss_pred CCCcccchhhhhccccccc-ceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 61 YDAHGDSFAAKRMRKLTQR-RAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
+.+|.+.+....+...... ....++.+...+.+|++|+....+.... .......
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------------------~~~~~~~ 71 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------------------FGIPHKA 71 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------------------------SEEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------------------------cccccch
Confidence 4566666655444211111 1345677788899999999764331100 0112346
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+.+|...|++++|++++.+|++++.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|+.|+|||+....
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998443
Q ss_pred eeeee--cCCCCCeEEEEEecCC----------CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 220 VKANK--SAHKESVRDLSFCRTD----------LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 ~~~~~--~~h~~~I~~l~~spd~----------~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
..... ..|...|.+++|++++ .+|++++.|++|++||. +.+....+..|...|.+++|++++++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 32222 3688899999999986 78999999999999994 56777788899999999999999999999
Q ss_pred EeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--Eee-----------cC
Q 005096 288 GGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFR-----------GH 353 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~--~~~-----------~h 353 (715)
++.|+.|+|||+++. .....+. +...|.+++|++++.+|+++ .|+.|+|||+.+++... .+. +|
T Consensus 231 gs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308 (343)
T ss_dssp EETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred EcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence 999999999999543 3444443 45679999999999887765 57889999998776543 433 57
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
...|.+++|++ ++.+|++|+.||.|++|++++
T Consensus 309 ~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 309 NPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCEEEEEECS-SSCCEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECC-CCCeEEEecCCceEEEEEEEc
Confidence 78899999999 889999999999999999854
No 53
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.1e-35 Score=323.53 Aligned_cols=283 Identities=24% Similarity=0.429 Sum_probs=243.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..-.++.|+||.++ +|++|. |++|+|||..+++.+..+. .|...|++|+|++++++|++|+.||.|+|||+++++.
T Consensus 104 ~d~y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 104 NDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ccccceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 34467889999764 777775 8999999999999887765 5677899999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
+..+..|...|.++++ ++.+|++++.|+.+++||... ...+..+.+|...+..+.|++++++|++++.|+.|+|||+
T Consensus 182 ~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred EEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 9999999999998887 568999999999999999875 4456778899999999999999999999999999999999
Q ss_pred CCCc----eeEEeccCCCceEEEEEcCCC-CEEEEE--ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 300 KSGR----ELCSFHGHKNMVLCVKWNQNG-NWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 300 ~s~~----~~~~~~~~~~~I~sl~~spdg-~~Lasg--s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.+++ .+.....|...|.+++|++++ ++|+++ +.|++|+|||+++++.+..+..+ ..+.++.|++ +++.|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~ 337 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELIS 337 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC-CCCeEEE
Confidence 8765 345667789999999999965 555554 47999999999999999888754 5788999999 5555555
Q ss_pred Ee--CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 373 GS--LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 373 gs--~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++ .|+.|+|||+.+...+. .+.+|.+.|++++|++|+.+|+||+.|++|+|||+.+...
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~-~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVA-ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred EEecCCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 44 78999999998876654 4557999999999999999999999999999999965443
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-35 Score=313.05 Aligned_cols=287 Identities=21% Similarity=0.401 Sum_probs=249.7
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+....+.. ...++.+...+..|++|+....+ ....+
T Consensus 19 ~~gh~~~v~~~~~s~-----~~~~l~s~~~dg~i~iw~~~~~~--------------------------------~~~~~ 61 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGK--------------------------------FEKTI 61 (312)
T ss_dssp ECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCC--------------------------------EEEEE
T ss_pred EcccCCcEEEEEECC-----CCCEEEEeeCCCeEEEEeCCCcc--------------------------------cchhh
Confidence 456666665554433 23456666778899999764321 12246
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++++.|+.|+|||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
...+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. .+...+.+++|++++++|++++.|+.|++||+
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 99999999999999999999999999999999999999988777664 45667999999999999999999999999999
Q ss_pred CCCceeEEeccCCCceE---EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe--
Q 005096 300 KSGRELCSFHGHKNMVL---CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-- 374 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~---sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-- 374 (715)
++++.+..+..|...+. .....+++++|++++.||.|++||+++++.+..+.+|...|.+++|++ ++.+|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~ 300 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALE 300 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECT
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEcc
Confidence 99999999887765433 223346789999999999999999999999999999999999999999 888999887
Q ss_pred CCCcEEEEEcC
Q 005096 375 LDGSIFHWLVG 385 (715)
Q Consensus 375 ~DG~I~iwd~~ 385 (715)
.|+.|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999874
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-35 Score=330.12 Aligned_cols=281 Identities=17% Similarity=0.297 Sum_probs=250.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEc--CCCCEEEEEeCCCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--HNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s--pdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.+|.+.|++++|++++ +|++|+.||+|+|||+++++.+..+..|...|.+++|+ +++++|++++.|+.|++||+.
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 567899999999999988 99999999999999999999999999999999999998 577899999999999999998
Q ss_pred CCce-----------------------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce
Q 005096 217 MNNV-----------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV 273 (715)
Q Consensus 217 ~~~~-----------------------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I 273 (715)
+... ...+..|...|.++ ++++++|++++.|+.|++||+++++.+..+.+|...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence 7642 44566788888877 5678999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
.+++|++++++|++++.|+.|++||+++++.+..+.+|...|.+++|+ +++|++++.||.|++||+++.+....+. +
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~ 390 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-H 390 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-C
Confidence 999999999999999999999999999999999999999999999997 6899999999999999999987766664 6
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
...+..++|++ ++.+|++++ ||.|++||+++++.+......|...|++++|+ +..++++++.||.+.+|-++
T Consensus 391 ~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 391 TNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp TTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 67788889998 788999988 89999999999887666566789999999998 45566677778877776543
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-36 Score=321.05 Aligned_cols=273 Identities=19% Similarity=0.377 Sum_probs=220.6
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe-cCCCCccEEEEEEcCCCCEEEEE
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS-LNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~H~~~I~~l~~spdg~~Latg 162 (715)
++.+...+.+|++|+....+. +.+... ..+|...|++|+|++++++|+++
T Consensus 26 ~las~~~D~~i~lw~~~~~~~-----------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDF-----------------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCC-----------------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCEEEEEEecCCCe-----------------------------EEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 666777889999998753210 011111 23499999999999999999999
Q ss_pred eCCCeEEEEeCCC-------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeeecCCCCCe
Q 005096 163 SQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESV 231 (715)
Q Consensus 163 s~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I 231 (715)
+.|++|+|||++. .+.+..+.+|...|.+++|++++++|++|+.|++|+|||+... +.+..+..|...|
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 9999999999853 3567788999999999999999999999999999999999432 4566778999999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCC--eeEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCC-----
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSG----- 302 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~--~~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~----- 302 (715)
.+++|++++.+|++++.|++|++||+.+. +.+..+.+|...|.+++|+++ +.+|++++.|++|+|||++++
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 99999999999999999999999998765 577888999999999999998 678999999999999998754
Q ss_pred ---ceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEE-eecCCC-CeEEEEEccC-CCCEEEEE
Q 005096 303 ---RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELES-FRGHRK-DVTALAWHPF-HEEYFVSG 373 (715)
Q Consensus 303 ---~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~-~~~h~~-~V~~l~~sp~-~~~~l~sg 373 (715)
.++..+.. |...|.+++|++++ +|++++.||.|+|||..+++ .+.. +..|.. .|.+++|++. ++.+|+++
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 33444544 88899999999654 79999999999999998774 3333 356776 8999999985 57899999
Q ss_pred eCCCcEEEEEcCC
Q 005096 374 SLDGSIFHWLVGH 386 (715)
Q Consensus 374 s~DG~I~iwd~~~ 386 (715)
+.||+|+|||++.
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999854
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.7e-36 Score=332.46 Aligned_cols=278 Identities=22% Similarity=0.460 Sum_probs=250.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..+|...|+|++| ++++|++|+.||.|+|||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 4567888999988 7899999999999999999999999999999999999999 78999999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE---EEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~---~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.+..+..|...|.+++|+ +.+|++++.|+.|++||+++.+.. ..+.+|...|.+++| ++++|++++.|+.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 999999999999999996 569999999999999999877655 677889999999999 6889999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||+++++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++.+|++|+.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCC
Confidence 999999999999999999999999 4789999999999999999999999999999999999999 67899999999
Q ss_pred CcEEEEEcCCCCc--------eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 377 GSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 377 G~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|.|++||+.+... .......|.+.|++++| ++.+|++++.||.|++||+.....
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999999865431 45566789999999999 788899999999999999976543
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=333.36 Aligned_cols=282 Identities=15% Similarity=0.305 Sum_probs=237.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eEEEEeccC------------CCEEEEEEcCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----------FEMILQAHD------------HAIRSMVWSHND 198 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-----------~~~~l~~h~------------~~V~~l~~spdg 198 (715)
.|.+.|++|+|++++++||+|+.||.|+|||+.+.+ ....+.+|. ..|++++|++++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 578888998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEeCCCCcee----------------------------------------eeecCCCCCeEEEEE
Q 005096 199 --NWMVSGDDGGAIKYWQNNMNNVK----------------------------------------ANKSAHKESVRDLSF 236 (715)
Q Consensus 199 --~~L~tgs~dg~I~iwd~~~~~~~----------------------------------------~~~~~h~~~I~~l~~ 236 (715)
.+|++++.|+.|+|||+.++... .....|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764332 123679999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC-eeEE-------EecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARC-QEER-------SLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE--- 304 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~-~~~~-------~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~--- 304 (715)
++++++|+++ .|+.|++||+++. +.+. .+..|...|++++|++++ ++|++++.|+.|+|||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 8999999999843 3333 255788999999999998 9999999999999999999886
Q ss_pred -eEEeccCCC------------ceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCC--------------
Q 005096 305 -LCSFHGHKN------------MVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD-------------- 356 (715)
Q Consensus 305 -~~~~~~~~~------------~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~-------------- 356 (715)
+..+..+.. .|.+++|++++++|++++. +.|+|||+++ ++.+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 778887775 8999999999999999998 9999999997 8888888877532
Q ss_pred -eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe-------------------------------eccCCCEEEE
Q 005096 357 -VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-------------------------------NVHDNTVWDL 404 (715)
Q Consensus 357 -V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~-------------------------------~~h~~~V~~l 404 (715)
+..++|++ ++.+|++++.||.|+|||+.++....... ..+...|.++
T Consensus 344 ~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 33499999 88999999999999999998876532111 0234578999
Q ss_pred EEcCCCCEEEEEECCCeEEEEec
Q 005096 405 AWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+|+|++.+|++++.|+ +++|.-
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEEC
T ss_pred EECCCCCEEEEEecce-eeeecc
Confidence 9999999999998776 777754
No 59
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.1e-36 Score=326.07 Aligned_cols=245 Identities=27% Similarity=0.403 Sum_probs=222.4
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..+...|++++|++|+++|++|+.|+.|+|||+++++.+..+.+|...|.+++|++++++|++++.|++|++||+.+++.
T Consensus 120 ~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEe-------cccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 221 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-------TGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l-------~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
...+. +...+.+++|++ ++++|++++.|++|++||+++++.+..+ .+|...|.+++|++++++|++++.|+
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 76664 567899999999 8999999999999999999998877766 56888999999999999999999999
Q ss_pred cEEEEECCCC------------ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 293 LVKLWDAKSG------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 293 ~I~iwDl~s~------------~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
.|+|||+++. .+...+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+.+|...|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 9999999753 3456677899999999999999999999999999999999999999999999999999
Q ss_pred EEccC-----CCCEEEEEeCCCcEEEEEcCC
Q 005096 361 AWHPF-----HEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 361 ~~sp~-----~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+|++. ++.+|++|+.||+|+||++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99863 468999999999999999853
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=321.61 Aligned_cols=293 Identities=19% Similarity=0.242 Sum_probs=246.5
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEe-------------ccCCCEEEEEEcC-CCCEEEE
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQ-------------AHDHAIRSMVWSH-NDNWMVS 203 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~-------------~h~~~V~~l~~sp-dg~~L~t 203 (715)
.+.+|.+.|++++|++ ++++|++++.||.|+|||+.+.+....+. .|...|.+++|++ ++++|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 5678999999999999 99999999999999999999876554443 5899999999999 7789999
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
++.||.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 9999999999999988877765 6788999999884 45999999999999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCc-eeEEe---------------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 281 TKS-LLVSGGKDSLVKLWDAKSGR-ELCSF---------------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 281 dg~-~L~sgs~Dg~I~iwDl~s~~-~~~~~---------------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
+++ +|++++.|+.|++||+++++ .+..+ ..|...|++++|++++++|++++.|+.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 998 68999999999999998765 34443 46788999999999999999999999999999999
Q ss_pred CeEEEEeecCC----CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 344 MKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 344 ~~~~~~~~~h~----~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
++.+..+..+. .....+.+.......+++++.|+.|++||+.+..... .+..|...|++++|++++.+|++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT-MLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE-EECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee-eeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 88765543321 1112223333356677777889999999998876554 445799999999999999999999999
Q ss_pred CeEEEEecCCCCCc
Q 005096 420 HTTKFWCRNRPGDT 433 (715)
Q Consensus 420 g~I~iWdl~~~~~~ 433 (715)
|.|++|+++.....
T Consensus 356 g~i~iw~~~~~~~~ 369 (408)
T 4a11_B 356 CNILAWVPSLYEPV 369 (408)
T ss_dssp SCEEEEEECC----
T ss_pred CeEEEEeCCCCCcc
Confidence 99999999765543
No 61
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-37 Score=334.31 Aligned_cols=291 Identities=17% Similarity=0.306 Sum_probs=248.9
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...+.+..+.. ...++.+...+.+|++|+....+ ....
T Consensus 61 ~l~gH~~~V~~~~~sp-----~~~~l~s~s~D~~v~iWd~~~~~--------------------------------~~~~ 103 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTP-----EKNWIVSASQDGRLIVWNALTSQ--------------------------------KTHA 103 (380)
T ss_dssp EECCCSSCEEEEEECT-----TSSCEEEEETTSEEEEEETTTTE--------------------------------EEEE
T ss_pred cccccccEEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--------------------------------cceE
Confidence 3566766666555433 23466777788999999864322 1224
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------ceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIK 211 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-------~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~ 211 (715)
+..|...|.+++|++++++|++|+.|+.|+|||+.+. .....+.+|.+.|.++.|++++ .+|++|+.|++|+
T Consensus 104 ~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~ 183 (380)
T 3iz6_a 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCV 183 (380)
T ss_dssp EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEE
T ss_pred EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEE
Confidence 5679999999999999999999999999999998653 2455678999999999999874 5799999999999
Q ss_pred EEeCCCCceeeee-----cCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECC-CCeeEEEecccCCceEEEEEcCCCCE
Q 005096 212 YWQNNMNNVKANK-----SAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 212 iwd~~~~~~~~~~-----~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
+||+.+++.+..+ ..|...|.+++|++ ++++|++++.|++|++||++ ..+.+..+.+|...|++++|+|++++
T Consensus 184 ~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE
T ss_pred EEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe
Confidence 9999999877666 57889999999977 78999999999999999997 45677888999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCC-------CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe----ecC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHGHK-------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF----RGH 353 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-------~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~----~~h 353 (715)
|++++.|++|+|||+++++.+..+..+. ..|++++|++++++|++|+.||.|+|||+.+++.+..+ .+|
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999999999999999999888776432 24899999999999999999999999999999888777 679
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
...|++++|++ ++.+|++|+.|++|+||++....
T Consensus 344 ~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 344 EGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CCceEEEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999 89999999999999999997654
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.7e-35 Score=325.04 Aligned_cols=279 Identities=23% Similarity=0.425 Sum_probs=254.7
Q ss_pred EecCCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 138 TSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 138 ~~l~~H~~~I-~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..+.+|.+.| +|+.+ ++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||++
T Consensus 112 ~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3577898875 55555 68999999999999999999999999999999999999997 6799999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+++....+..|...|.+++|+ ++.|++++.|++|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999995 678999999999999999999999999999999999999 6889999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||+++++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...+.++.++ +++|++++.|
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d 338 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNAD 338 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETT
T ss_pred EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCC
Confidence 999999999999999999999999 78999999999999999999999999999999999999884 5799999999
Q ss_pred CcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 377 GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|.|++||+++......+.. .|...|++++|+ +.+|++++.||.|++||+....
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 9999999988776555442 378899999995 6899999999999999997643
No 63
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-35 Score=312.00 Aligned_cols=252 Identities=21% Similarity=0.365 Sum_probs=219.8
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iw 255 (715)
..+.+|...|++++|++++++|++|+.|++|+|||++.. +.+..+.+|...|.+++|++ ++++|++++.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999999999999999999999999753 56778899999999999986 48999999999999999
Q ss_pred ECCCCe--eEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCC------
Q 005096 256 DFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQN------ 323 (715)
Q Consensus 256 dl~~~~--~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spd------ 323 (715)
|+++++ .+..+..|...|.+++|+++ +.+|++++.|+.|++||++++. ....+..|...|.+++|+++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 55667789999999999997 8899999999999999998763 24567789999999999996
Q ss_pred -------CCEEEEEECCCeEEEEECCCCe----EEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCc-
Q 005096 324 -------GNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP- 389 (715)
Q Consensus 324 -------g~~Lasgs~dg~I~iwDl~t~~----~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~- 389 (715)
+++|++++.|+.|+|||+++++ .+..+.+|...|.+++|+|++ +.+|++++.|++|+|||++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 567888999999999999953 58999999999999999977532
Q ss_pred -eEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 -QVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 -~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
..... ..|...|++++|++++++|++++.|+.|+||+.+..+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 22333 4577899999999999999999999999999986543
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-35 Score=354.33 Aligned_cols=292 Identities=23% Similarity=0.369 Sum_probs=266.4
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|+|||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I 294 (715)
+++....+..|...|++++|++++.+|++++.|++|++||+.++ .....+..|...|.+++|++ ++++|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999876 67788888999999999999 88899999999999
Q ss_pred EEEECCCCceeEEeccCC-CceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 295 KLWDAKSGRELCSFHGHK-NMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~-~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++||+++++....+..+. ..+.+++|++ ++++|++++.|+.|++||+++++.+..+..|...|++++|++ ++.+|+
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 244 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 999999888777776554 8899999999 999999999999999999999999999999999999999999 888999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE-EEEEECCCeEEEEecCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL-LCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs~Dg~I~iWdl~~~ 430 (715)
+++.||.|++||+.+..... ....|...|++++|++++.. +++++.|+.+.+|++...
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEK-TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEETTSCEEEEETTTCSEEE-EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEeCCCeEEEEECCCCcEEE-EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999999998876554 44467889999999999863 244455778889987654
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-35 Score=311.81 Aligned_cols=248 Identities=19% Similarity=0.334 Sum_probs=217.8
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iwd 214 (715)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+ .+.+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5789999999999999999999999999999999874 4678899999999999999863 89999999999999999
Q ss_pred CCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcCC-------
Q 005096 215 NNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPT------- 281 (715)
Q Consensus 215 ~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~spd------- 281 (715)
+++++ .+..+..|...|.+++|+++ +.+|++++.|++|++||+++.. ....+.+|...|.+++|+++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 98764 45566789999999999997 7899999999999999997653 24567789999999999997
Q ss_pred ------CCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCceEEEEEcCCC---CEEEEEECCCeEEEEECCCCe---
Q 005096 282 ------KSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMK--- 345 (715)
Q Consensus 282 ------g~~L~sgs~Dg~I~iwDl~s~~----~~~~~~~~~~~I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~--- 345 (715)
+++|++++.|++|+|||+++++ .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++..
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~ 243 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc
Confidence 5799999999999999998766 566788999999999999984 899999999999999998643
Q ss_pred EEEEe--ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 346 ELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 346 ~~~~~--~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
....+ ..|...|.+++|++ ++++|++++.|+.|+||+....
T Consensus 244 ~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 244 KKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred ceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECCC
Confidence 12233 46788999999999 8899999999999999998644
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-35 Score=315.00 Aligned_cols=280 Identities=15% Similarity=0.138 Sum_probs=245.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd 214 (715)
...+|.+.|++++|++++++|++++.||.|+|||+.+.+ ....+..|...|.+++|+++++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 346899999999999999999999999999999998876 3455668999999999999999 999999999999999
Q ss_pred C-CCCceeeeecC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeeEEEecccCCceEEEEEcCCC
Q 005096 215 N-NMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 215 ~-~~~~~~~~~~~--h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---------~~~~~~l~~~~~~I~si~~spdg 282 (715)
+ ++++. ..+.. |...|.+++|++ +++|++++.|+.|++||+++ .+.+..+. +...|.+++|++++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 9 77755 56677 999999999999 99999999999999999987 66666666 88899999999876
Q ss_pred CEEEEEeCCCcEEEEECCC-Cce--eEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC------eEEEEeec
Q 005096 283 SLLVSGGKDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM------KELESFRG 352 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s-~~~--~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~------~~~~~~~~ 352 (715)
|++++.|+.|++||+++ +.. ......+...|.+++|++ ++++|++++.||.|+|||++.. +.+..+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 543 334456788999999999 9999999999999999999887 77788888
Q ss_pred CCC---------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEECCCe-
Q 005096 353 HRK---------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGSNDHT- 421 (715)
Q Consensus 353 h~~---------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~Dg~- 421 (715)
|.. .|.+++|++ ++++|++++.||.|++||+++...... +..| ...|++++ +++.+|++++.||.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEE-CCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhh-hhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 865 999999999 788999999999999999988766544 4456 89999999 89999999999998
Q ss_pred EEEEec
Q 005096 422 TKFWCR 427 (715)
Q Consensus 422 I~iWdl 427 (715)
.+.|..
T Consensus 317 ~~~~~~ 322 (342)
T 1yfq_A 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred cccccc
Confidence 555553
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.5e-36 Score=324.89 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=231.1
Q ss_pred CccEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCce----------EEEEeccCCCEEEEEEcCCCCEEEEEe-
Q 005096 144 RCSINRVLWTPTGRRLITGSQS-------GEFTLWNGQSFNF----------EMILQAHDHAIRSMVWSHNDNWMVSGD- 205 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~d-------g~I~Iwd~~~~~~----------~~~l~~h~~~V~~l~~spdg~~L~tgs- 205 (715)
..+|+|++|++|+++|++|+.+ +.|+||++..... ...+..|+..|.+++++ ++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999754 3599999765431 23456788888888775 56666653
Q ss_pred ----------CCCcEEEEeCCCCceeee---------ecCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEE
Q 005096 206 ----------DGGAIKYWQNNMNNVKAN---------KSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEER 264 (715)
Q Consensus 206 ----------~dg~I~iwd~~~~~~~~~---------~~~h~~~I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~ 264 (715)
.|+.|++|+++....... ...+...+.+++|++|+++|++++ .|++|+|||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 567899998765432111 123445689999999999987655 68999999999999988
Q ss_pred EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCC----eEEE
Q 005096 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKL 338 (715)
Q Consensus 265 ~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg----~I~i 338 (715)
.+. |...|.+|+|+||+++|++++.| .+++|+..+++.+.. ...|...|.+++|++++++|++++.|+ .|++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 77789999999999999998855 577777777776544 345788899999999999999999887 6889
Q ss_pred EECCCCeE----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 339 YDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 339 wDl~t~~~----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
||+..... ...+..|...|++++|+| ++++||+|+.|++|+|||+++.+.+..+..+|...|++|+|+||+++||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 99877654 356778999999999999 8999999999999999999998877777888999999999999999999
Q ss_pred EEECCCeEEEEecCC
Q 005096 415 SGSNDHTTKFWCRNR 429 (715)
Q Consensus 415 sgs~Dg~I~iWdl~~ 429 (715)
+++.|++|+||++..
T Consensus 329 S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 329 SVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEEcCC
Confidence 999999999999954
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-35 Score=369.25 Aligned_cols=291 Identities=19% Similarity=0.355 Sum_probs=264.3
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|.+.|++++|++++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|++++++|++++.|+.|+|||+.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 219 NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+.+..+..|...|.+++|++ ++.++++++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 99999999999999999999 5568999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEe-------------------------------------------------------ccCCCceEEEEEc
Q 005096 297 WDAKSGRELCSF-------------------------------------------------------HGHKNMVLCVKWN 321 (715)
Q Consensus 297 wDl~s~~~~~~~-------------------------------------------------------~~~~~~I~sl~~s 321 (715)
||+++++....+ ..|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 998776543322 1566788999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC--------------
Q 005096 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------------- 387 (715)
Q Consensus 322 pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------------- 387 (715)
++++++++++.|+.|++||+.++..+..+.+|...|++++|++ ++.+|++++.||.|++||+...
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 9999999999999999999999999999999999999999999 8889999999999999985320
Q ss_pred ----------------------------------------------------------------CceEEEeeccCCCEEE
Q 005096 388 ----------------------------------------------------------------TPQVEIHNVHDNTVWD 403 (715)
Q Consensus 388 ----------------------------------------------------------------~~~~~~~~~h~~~V~~ 403 (715)
.........|...|++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 1112233457888999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
++|++++++|++++.||.|++|++...
T Consensus 1009 l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 1009 IQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp EEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999999999999999999998654
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.8e-35 Score=366.48 Aligned_cols=332 Identities=20% Similarity=0.329 Sum_probs=274.2
Q ss_pred CCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecC
Q 005096 62 DAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLN 141 (715)
Q Consensus 62 ~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 141 (715)
.+|...+.+..+.. ...++.+...+++|++|+....+ ....+.
T Consensus 612 ~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~vw~~~~~~--------------------------------~~~~~~ 654 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ-----DGQRIASCGADKTLQVFKAETGE--------------------------------KLLDIK 654 (1249)
T ss_dssp CCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCC--------------------------------EEEEEC
T ss_pred ecccccEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCC--------------------------------EEEEec
Confidence 44555544433322 23355556677889999875332 122467
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCc
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+|.+.|++++|++++++|++++.||+|+|||+.+++.+..+..|...|.+++|++ ++.+|++++.|+.|++||+.+++
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 8999999999999999999999999999999999999999999999999999999 45689999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---------------------------------
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--------------------------------- 266 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l--------------------------------- 266 (715)
....+..|...|.+++|++++++|++++.||+|++||+.+++....+
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999998766543322
Q ss_pred ----------------------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC
Q 005096 267 ----------------------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 267 ----------------------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg 324 (715)
.+|...|.+++|+++++++++++.|+.|++||+++++.+..+.+|...|++++|++++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 1567789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECC--------------------------------------------------------------
Q 005096 325 NWVLTASKDQIIKLYDIR-------------------------------------------------------------- 342 (715)
Q Consensus 325 ~~Lasgs~dg~I~iwDl~-------------------------------------------------------------- 342 (715)
++|++++.|+.|++||++
T Consensus 895 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 974 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS
T ss_pred CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC
Confidence 999999999988888853
Q ss_pred -----------------CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---------------
Q 005096 343 -----------------AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ--------------- 390 (715)
Q Consensus 343 -----------------t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~--------------- 390 (715)
+++.+..+..|...|++++|++ ++++|++++.||.|++||+.++...
T Consensus 975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 1053 (1249)
T 3sfz_A 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053 (1249)
T ss_dssp EEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 2233444557888899999999 7888999999999999987653211
Q ss_pred ------------------------EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 391 ------------------------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 391 ------------------------~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
...+..|.+.|++++|++++.+|++++.|++|++||+....
T Consensus 1054 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp SSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred CCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 12233467778888899988889999999999999886544
No 70
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=301.66 Aligned_cols=276 Identities=23% Similarity=0.425 Sum_probs=235.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+++|+||+++ +||+| .|++|+|||+++++.+..+. .|...|++++|++++++|++|+.||+|+|||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999886 67766 48999999999999888775 56778999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
..|...+.++.+ ++..|++++.++.+++|+.... ..+..+.+|...+.++++++++++|++++.|+.|+|||+++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999988877665 5679999999999999998765 4556778899999999999999999999999999999998765
Q ss_pred e----eEEeccCCCceEEEEEcCCCCEE---EEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE--e
Q 005096 304 E----LCSFHGHKNMVLCVKWNQNGNWV---LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG--S 374 (715)
Q Consensus 304 ~----~~~~~~~~~~I~sl~~spdg~~L---asgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg--s 374 (715)
. +.....+...|.++++++++..+ ++++.++.|++||.+......... +...+..+.|++ .+..++++ +
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~ 261 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGF 261 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECT
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEc
Confidence 3 34456678889999999966533 355678999999999877766554 677899999999 55555444 4
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.|+.|+|||+++...+. .+.+|.+.|++++|++|+.+|++++.||+|+|||+.+
T Consensus 262 ~d~~i~iwd~~~~~~~~-~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVA-ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 79999999998876654 4567999999999999999999999999999999854
No 71
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-35 Score=312.76 Aligned_cols=293 Identities=17% Similarity=0.293 Sum_probs=224.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIK 211 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~ 211 (715)
..+.+|.+.|++++|++++++|++++.||.|+|||+.+. +....+..|...|++++|++ |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356899999999999999999999999999999999876 46777889999999999999 689999999999999
Q ss_pred EEeCCCC---------ceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEec-------------
Q 005096 212 YWQNNMN---------NVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLT------------- 267 (715)
Q Consensus 212 iwd~~~~---------~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~------------- 267 (715)
|||++++ +....+..|...|.+++|+++ +++|++++.|+.|++||+++.+.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 456777889999999999999 9999999999999999998766543332
Q ss_pred ccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCCC----CEEEEEECCCeEEE
Q 005096 268 GHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKL 338 (715)
Q Consensus 268 ~~~~~I~si~~spd---g~~L~sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg----~~Lasgs~dg~I~i 338 (715)
.+...+.+++|+++ +++|++++.|+.+.+|+...++. +..+.+|...|++++|++++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999997 89999999999998888887765 66778899999999999998 89999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC----CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~----DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
||++++............+.....+. ....++.+.. +..+.+|+.... ........|...|++++|++++++|+
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEECC----------------------------------------CCSEEE-EEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EeCCCCcCccccCCcccceeccCCCc-ccccccccccccccceeeeecccccc-cEEEEEecccccEEEEEEcCCCCEEE
Confidence 99987765554444444444444333 2333333332 233444443222 23344567899999999999999999
Q ss_pred EEECCCeEEEEecCCCCC
Q 005096 415 SGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 415 sgs~Dg~I~iWdl~~~~~ 432 (715)
+++.||.|+||+++....
T Consensus 323 s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEETTSCEEEEEECTTSC
T ss_pred EecCCCcEEEEecCcCcc
Confidence 999999999999976443
No 72
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=342.89 Aligned_cols=285 Identities=8% Similarity=0.061 Sum_probs=225.4
Q ss_pred ecCCCCccEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCce-----------EEEEeccCCCEEEEEEcCCCCEE
Q 005096 139 SLNKNRCSINRVLWTPT------GRRLITGSQSGEFTLWNGQSFNF-----------EMILQAHDHAIRSMVWSHNDNWM 201 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spd------g~~Latgs~dg~I~Iwd~~~~~~-----------~~~l~~h~~~V~~l~~spdg~~L 201 (715)
.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.+.+. ...+.+|...|++++|+++ +.|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35568899999999997 57999999999999999986542 2467889999999999975 589
Q ss_pred EEEeCCCcEEEEeCCCCc-eeeeecCCCCCeEEE--EEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCC--ceEE
Q 005096 202 VSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDL--SFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKS 275 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l--~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~--~I~s 275 (715)
++|+.||+|+|||++++. ....+..|...|.+| +|++++ .+|++++.|++|+|||+++.+.+..+.+|.. .|.+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 999999999999998764 445578899999999 567787 8999999999999999998877766666653 5889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--- 352 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--- 352 (715)
++|+|+++.|++++.|++|+|||++++.++..+.+|.+.|++|+|++++++|++|+.|++|+|||+... .+..++.
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~ 439 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSA 439 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcc
Confidence 999999999999999999999999999988888899999999999999999999999999999998653 2222211
Q ss_pred --CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC---CEEEEEECCCeEEEEec
Q 005096 353 --HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 353 --h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~L~sgs~Dg~I~iWdl 427 (715)
+...|.+++|++ ++..+ .... .+.+|+..........+.+|...|++++|++++ ..|++|+.||.|+||++
T Consensus 440 ~~~~~~v~~v~~sp-~g~~~-~~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 440 TQKSLRLWKWDYSI-KDDKY-RIDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp -CCCCEEEECBCCS-SSCEE-EECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred ceeeeEEEEeccCC-CCCeE-EccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 112467899999 45543 2222 233443332223344566799999999999995 49999999999999998
Q ss_pred CC
Q 005096 428 NR 429 (715)
Q Consensus 428 ~~ 429 (715)
..
T Consensus 516 ~~ 517 (524)
T 2j04_B 516 SL 517 (524)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.8e-36 Score=316.72 Aligned_cols=252 Identities=17% Similarity=0.312 Sum_probs=211.6
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAI 210 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I 210 (715)
++.+.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|++ ++++|++|+.|++|
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 4556788999999999999999999999999999999998764 4677899999999999986 48999999999999
Q ss_pred EEEeCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCee---EEEecccCCceEEEEEcCC--
Q 005096 211 KYWQNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT-- 281 (715)
Q Consensus 211 ~iwd~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~---~~~l~~~~~~I~si~~spd-- 281 (715)
+|||++++. ....+..|...|.+++|+++ +.+|++++.|++|++||+++... ...+..|...|.+++|+++
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 999998863 55667789999999999997 78999999999999999976532 3456678889999999987
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceEEEEEcCCC----CEEEEEECCCeEEEE
Q 005096 282 ---------------KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLY 339 (715)
Q Consensus 282 ---------------g~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~sl~~spdg----~~Lasgs~dg~I~iw 339 (715)
+++|++++.|+.|+|||+++. +.+..+.+|...|.+++|++++ ++|++++.|++|+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 468999999999999999865 4566788899999999999986 899999999999999
Q ss_pred ECCCC---e-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 340 DIRAM---K-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 340 Dl~t~---~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
|+++. + ....+..|...|.+++|++ ++.+|++++.|+.|+||+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECTT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECCC
Confidence 99762 1 2344567889999999999 7899999999999999997543
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-35 Score=319.99 Aligned_cols=292 Identities=14% Similarity=0.195 Sum_probs=251.2
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. +++.+...+..|++|+....+.... . .....+
T Consensus 12 ~~~h~~~i~~~~~~~-------~~l~s~~~dg~i~iw~~~~~~~~~~----------~----------------~~~~~~ 58 (397)
T 1sq9_A 12 GKAHDADIFSVSACN-------SFTVSCSGDGYLKVWDNKLLDNENP----------K----------------DKSYSH 58 (397)
T ss_dssp SSCSSSCEEEEEECS-------SEEEEEETTSEEEEEESBCCTTCCG----------G----------------GGEEEE
T ss_pred hhhhhcCeEEEEecC-------CeEEEEcCCCEEEEEECCCcccccC----------C----------------CcceEE
Confidence 456666666655532 5667777889999999865441110 0 011245
Q ss_pred CCCCccEEEEEEcCC----C---CEEEEEeCCCeEEEEeCCCCce-----EEEEecc-----CCCEEEEEEc----CCCC
Q 005096 141 NKNRCSINRVLWTPT----G---RRLITGSQSGEFTLWNGQSFNF-----EMILQAH-----DHAIRSMVWS----HNDN 199 (715)
Q Consensus 141 ~~H~~~I~~l~~spd----g---~~Latgs~dg~I~Iwd~~~~~~-----~~~l~~h-----~~~V~~l~~s----pdg~ 199 (715)
.+|...|++++|+++ + ++|++++.||.|+|||+.+.+. ...+..| ...|.+++|+ ++++
T Consensus 59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 589999999999999 9 9999999999999999998887 8888888 5999999999 9999
Q ss_pred E-EEEEeCCCcEEEEeCCC------Cceee-----ee-------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 200 W-MVSGDDGGAIKYWQNNM------NNVKA-----NK-------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 200 ~-L~tgs~dg~I~iwd~~~------~~~~~-----~~-------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
+ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++ +|++++.|+.|++||+++.
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9 99999999999999988 55544 55 4588899999999999 9999999999999999999
Q ss_pred eeEEEecc---c---CCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEecc-------------CCCceEEE
Q 005096 261 QEERSLTG---H---GWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHG-------------HKNMVLCV 318 (715)
Q Consensus 261 ~~~~~l~~---~---~~~I~si~~spdg~~L~sgs~D---g~I~iwDl~s~~~~~~~~~-------------~~~~I~sl 318 (715)
+.+..+.. | ...|.+++|++++++|++++.| +.|++||+++++.+..+.. |...|.++
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence 99999998 8 9999999999999999999999 9999999999999999988 99999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEee------cC---------------CCCeEEEEEccCCC----------
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------GH---------------RKDVTALAWHPFHE---------- 367 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~------~h---------------~~~V~~l~~sp~~~---------- 367 (715)
+|++++++|++++.|+.|+|||+++++.+..+. .| ...|++++|++ ++
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~ 376 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLN 376 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTS
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-cccccccccccc
Confidence 999999999999999999999999999999999 78 99999999999 54
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 005096 368 EYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~ 387 (715)
.+|++++.||.|++||++++
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC-
T ss_pred ceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998764
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.2e-35 Score=342.69 Aligned_cols=291 Identities=26% Similarity=0.425 Sum_probs=245.8
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|.+.+.+..+.. ...+++.+...+.+|++|++...+... ......+
T Consensus 378 l~~H~~~V~~v~~~~----~~~~~l~s~s~D~~i~~W~~~~~~~~~---------------------------~~~~~~~ 426 (694)
T 3dm0_A 378 MRAHTDMVTAIATPI----DNADIIVSASRDKSIILWKLTKDDKAY---------------------------GVAQRRL 426 (694)
T ss_dssp EECCSSCEEEEECCT----TCCSEEEEEETTSEEEEEECCCSTTCS---------------------------CEEEEEE
T ss_pred cccCCceeEEEEecC----CCCCEEEEEeCCCcEEEEEccCCCccc---------------------------cccccee
Confidence 456666665544322 123467778889999999876432110 1123457
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||+.....
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred eeee---cCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 221 KANK---SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 221 ~~~~---~~h~~~I~~l~~spd~--~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
.... ..|...|.+++|++++ ..|++++.|++|+|||+++.+....+.+|...|++++|++++++|++++.|+.|+
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3322 4688899999999986 6899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-------------------CC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------------------KD 356 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------------------~~ 356 (715)
|||+++++.+..+. +...|.+++|++++.+|++++ ++.|+|||+++++.+..+..+. ..
T Consensus 587 iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 587 LWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred EEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 99999999887776 456799999999998887765 6679999999999887775332 13
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+++++|++ ++++|++|+.||.|+|||+.
T Consensus 665 ~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred eeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 78999999 89999999999999999985
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=350.14 Aligned_cols=284 Identities=12% Similarity=0.157 Sum_probs=231.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
.|...|++|+|++ +++|++++.|++|+|||+.+++.+..+. |...|++++|++++++|++|+.||.|++||++++++.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999888886 6789999999999999999999999999999987753
Q ss_pred -----------eeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEeccc------------------CC
Q 005096 222 -----------ANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------------------GW 271 (715)
Q Consensus 222 -----------~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~------------------~~ 271 (715)
..+..|...|.+++|+++ +..|++++.|+.| +||+++.+.+..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 234678899999999996 4789999999999 9999999888887655 46
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--ec---c-------------CCCceEEEEE-------------
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FH---G-------------HKNMVLCVKW------------- 320 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~---~-------------~~~~I~sl~~------------- 320 (715)
.|++++|++++++|++++.|+.|+|||+++++++.. +. . +...|++++|
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999977654321 10 0 0111222222
Q ss_pred --------------------------------------------------------------------------------
Q 005096 321 -------------------------------------------------------------------------------- 320 (715)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (715)
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence
Q ss_pred -----------------------------------------------------------------------cCCCCEEEE
Q 005096 321 -----------------------------------------------------------------------NQNGNWVLT 329 (715)
Q Consensus 321 -----------------------------------------------------------------------spdg~~Las 329 (715)
++++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 344566777
Q ss_pred EECCCeEEEEECCCCeEE----EE--ee-----cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC----------
Q 005096 330 ASKDQIIKLYDIRAMKEL----ES--FR-----GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---------- 388 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~----~~--~~-----~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---------- 388 (715)
|+.|++|++||+.++... .. +. +|...|++|+|+| ++++||+|+.||+|+|||+.+.+
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 777777777777665321 11 11 6788999999999 89999999999999999997652
Q ss_pred ----------------------------------ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 389 ----------------------------------PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 389 ----------------------------------~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.....+..|.+.|++|+|++|| +||+|+.|++|+|||++..
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 1244566799999999999999 9999999999999998543
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-34 Score=344.70 Aligned_cols=331 Identities=18% Similarity=0.294 Sum_probs=278.1
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ...++.+...++.|++|+..... ....+
T Consensus 9 ~~~h~~~v~~i~~sp-----~~~~la~~~~~g~v~iwd~~~~~--------------------------------~~~~~ 51 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-----TEPWVLTTLYSGRVEIWNYETQV--------------------------------EVRSI 51 (814)
T ss_dssp EEEECSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTTE--------------------------------EEEEE
T ss_pred eecCCCceEEEEECC-----CCCEEEEEeCCCEEEEEECCCCc--------------------------------eEEEE
Confidence 344555554444433 23445555567889999864322 12345
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-c
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-N 219 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~ 219 (715)
.+|...|++++|++++++|++++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|++||+.++ .
T Consensus 52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999887 6
Q ss_pred eeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccC-CceEEEEEcC--CCCEEEEEeCCCcEE
Q 005096 220 VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHP--TKSLLVSGGKDSLVK 295 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-~~I~si~~sp--dg~~L~sgs~Dg~I~ 295 (715)
....+..|...|.+++|++ +++.|++++.|++|++||+.+.+....+..+. ..|.+++|++ ++++|++++.|+.|+
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 6777888999999999999 88899999999999999998887777776554 8899999999 999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||+++++.+..+..|...|++++|++++++|++++.||.|++||+.+++.+..+..+...|.+++|++++..++++++.
T Consensus 212 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999955554444455
Q ss_pred CCcEEEEEcCCCCceEEE------------------------------------------eeccCCCEEEEEEcCCCCEE
Q 005096 376 DGSIFHWLVGHETPQVEI------------------------------------------HNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~------------------------------------------~~~h~~~V~~l~~spdg~~L 413 (715)
++.+.+|++........+ ...+...+.+++|++++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 371 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV 371 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence 677888887654322211 12234467899999999999
Q ss_pred EEEECCCeEEEEecCC
Q 005096 414 CSGSNDHTTKFWCRNR 429 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~ 429 (715)
++++ |+.+.+|++..
T Consensus 372 a~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 372 TVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEEE-TTEEEEEETTT
T ss_pred EEec-CCEEEEEECcc
Confidence 9998 89999999753
No 78
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.5e-34 Score=301.33 Aligned_cols=294 Identities=23% Similarity=0.406 Sum_probs=250.9
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...|.+..+... ..+++.+...|.+|++|++...+... ......+
T Consensus 34 L~GH~~~V~~v~~sp~----~~~~l~S~s~D~~i~vWd~~~~~~~~---------------------------~~~~~~l 82 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQ----FPDMILSASRDKTIIMWKLTRDETNY---------------------------GIPQRAL 82 (340)
T ss_dssp ECCCSSCEEEEEECTT----CTTEEEEEETTSCEEEEEECCSSSCS---------------------------EEEEEEE
T ss_pred ECCccCCEEEEEEeCC----CCCEEEEEcCCCeEEEEECCCCCccc---------------------------ceeeEEE
Confidence 5678777777655431 12466777889999999976443111 1123467
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+.....
T Consensus 83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred -eeeecCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 221 -KANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 221 -~~~~~~h~~~I~~l~~spd~--~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
......|...|.+++|+.++ .++++++.|+.|++||+++.+.+..+.+|...|++++|++++++|++++.|+.|+||
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw 242 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 44556789999999998764 578899999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---------cCCCCeEEEEEccCCCC
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---------GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---------~h~~~V~~l~~sp~~~~ 368 (715)
|+++.+.+..+.. ...|.+++|++++.+ ++++.|+.|+|||++++..+..+. .|...|++++|++ +++
T Consensus 243 d~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~ 319 (340)
T 4aow_A 243 DLNEGKHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQ 319 (340)
T ss_dssp ETTTTEEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSS
T ss_pred EeccCceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCC
Confidence 9999999888874 567999999998765 455679999999999888776654 5788999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~ 388 (715)
+|++|+.||.|+|||++++.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999998764
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-34 Score=329.82 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=258.5
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEeccCCC-EEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHA-IRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h~~~-V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
..|.+.|++++|++|+++|++++ ++.|+|||+.++ +....+.+|... |++++|++ ++++|++++.||.|+||
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46899999999999999999998 789999999998 899999999999 99999999 99999999999999999
Q ss_pred eCCCC--------ceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEEecccCCceEEEEEcCC
Q 005096 214 QNNMN--------NVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 214 d~~~~--------~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~l~~~~~~I~si~~spd 281 (715)
|+.++ .....+..|...|.+++|++++++|++++.+ +.|++|| .++.+..+..|...|.+++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 99744 6667778899999999999999999999988 6888888 56678888999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceeEEeccCCC---ceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEe-e---c
Q 005096 282 KS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKN---MVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESF-R---G 352 (715)
Q Consensus 282 g~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~---~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~-~---~ 352 (715)
++ +|++++.|+.|++||+++++.+..+..|.. .|++++|+++ +++|++++.|+.|++||+++++.+..+ . .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 251 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccc
Confidence 98 899999999999999999999999999998 9999999999 999999999999999999999999999 6 8
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
|...|.+++|+ ++.+|++++.|+.|++||+++......+... +...+.++.|. ++.+|++++.||.|++||+..
T Consensus 252 ~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 252 VQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred cCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 99999999999 7899999999999999999887665554432 24678899997 889999999999999999865
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-35 Score=312.87 Aligned_cols=251 Identities=20% Similarity=0.360 Sum_probs=212.9
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEE
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwd 256 (715)
.+.+|.+.|++++|++++++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++ ++++|++++.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998764 4567889999999999985 488999999999999999
Q ss_pred CCCC--eeEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce---eEEeccCCCceEEEEEcCC------
Q 005096 257 FARC--QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQN------ 323 (715)
Q Consensus 257 l~~~--~~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~~---~~~~~~~~~~I~sl~~spd------ 323 (715)
++++ +....+.+|...|++++|+++ +.+|++++.|+.|++||++++.. ...+..|...|.+++|+++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 356677889999999999998 78999999999999999987642 3445678889999999987
Q ss_pred -----------CCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCeEEEEEccCC---CCEEEEEeCCCcEEEEEcCC
Q 005096 324 -----------GNWVLTASKDQIIKLYDIRAM---KELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 324 -----------g~~Lasgs~dg~I~iwDl~t~---~~~~~~~~h~~~V~~l~~sp~~---~~~l~sgs~DG~I~iwd~~~ 386 (715)
+++|++++.|+.|+|||+++. +.+..+.+|...|.+++|++++ +.+|++++.|++|+|||++.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999765 5677888999999999999943 38999999999999999976
Q ss_pred C---CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 387 E---TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 387 ~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
. ......+..|...|++++|++++.+|++++.|++|+||+.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 2 22223445688999999999999999999999999999986543
No 81
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=306.95 Aligned_cols=285 Identities=17% Similarity=0.190 Sum_probs=242.5
Q ss_pred EecCCCCccEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CceE-EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 138 TSLNKNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQS-FNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spd---g~~Latgs~dg~I~Iwd~~~-~~~~-~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
..+.+|.+.|++++|+++ |++|++|+.||.|+|||+++ ++.+ ..+..|...|++++|++++++|++++.||.|+|
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 367899999999999999 69999999999999999987 4444 788899999999999999999999999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEE--ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSF--CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~--spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
||+++++... +..|...|.+++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+. ...+++++.
T Consensus 113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 188 (368)
T 3mmy_A 113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATA 188 (368)
T ss_dssp EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEG
T ss_pred EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeC
Confidence 9999988766 4579999999999 8899999999999999999999998888887654 66677776 458889999
Q ss_pred CCcEEEEECCCCceeEEec--cCCCceEEEEEcCCCCE----EEEEECCCeEEEEECCCC---eEEEEeecCCC------
Q 005096 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAM---KELESFRGHRK------ 355 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~----Lasgs~dg~I~iwDl~t~---~~~~~~~~h~~------ 355 (715)
|+.+++||++......... .....+.++++..+... |++++.|+.|++||++.. +.+..+..|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 9999999998765443332 23445666666655544 999999999999999987 55777777776
Q ss_pred ------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 356 ------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 356 ------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.|++++|++ ++++|++++.||.|++||+++...+ ..+..|...|++++|++++.+|++++.|+..+.|++.
T Consensus 269 ~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 269 APQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKL-KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE-EECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEE-EEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 799999999 7889999999999999999876654 4455789999999999999999999999876666654
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.8e-35 Score=311.49 Aligned_cols=242 Identities=15% Similarity=0.266 Sum_probs=219.5
Q ss_pred CCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 005096 141 NKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 141 ~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~ 215 (715)
..|...|++++|+++ +++|++|+.||.|+|||+.+++.+..+..|...|.+++|++ ++++|++++.||.|+|||+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 358899999999999 67999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-------------------------
Q 005096 216 NMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------------------------- 267 (715)
Q Consensus 216 ~~~~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~------------------------- 267 (715)
++++....+ ..|...|.+++|++++++|++++.|+.|++||+++.+....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 999888877 6899999999999999999999999999999998765544333
Q ss_pred ---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------eEEeccCCCceEEEEEcCC--CCEEE
Q 005096 268 ---GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--------------LCSFHGHKNMVLCVKWNQN--GNWVL 328 (715)
Q Consensus 268 ---~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--------------~~~~~~~~~~I~sl~~spd--g~~La 328 (715)
.|...|.+++|+ +++|++++.|+.|++||+++++. +..+..|...|++++|+++ +++|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 388999999999 78999999999999999987654 6777888999999999999 99999
Q ss_pred EEECCCeEEEEECCCCe----EEEEeecC--CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 329 TASKDQIIKLYDIRAMK----ELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~----~~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+++.||.|+|||+++++ .+..+..| ...|++++|++ ++++|++++.||.|+|||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999875 34477777 78999999999 89999999999999999985
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-33 Score=310.02 Aligned_cols=260 Identities=20% Similarity=0.356 Sum_probs=221.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCce
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~-~~~~ 220 (715)
.|...|++++|++++++|++|+.||.|+|||+.+++.+..+..|...|.+++| ++++|++++.||.|++||++ ....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 48899999999999999999999999999999999999999999999999999 56899999999999999998 4567
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEe--CCCcEEEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGG--KDSLVKLW 297 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs--~Dg~I~iw 297 (715)
...+..|...|.+++|++++++|++++.|+.|++||+++.+.+..+..|...|.+++|++++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 778889999999999999999999999999999999999999999999999999999999775 666654 79999999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEE--EeecCCCCeEEEEEccCCCCEEEEE
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~--~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
|+++++.+..+. +...|++++|++++++|++++ .|+.|+|||+++++... .+..|...|.+++|++ ++.+|+++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 999999988886 667899999999999999954 89999999999866544 4678999999999999 89999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
+.||.|++||+.+..........+.....++.
T Consensus 368 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp CTTSEEEEEECCC-------------------
T ss_pred eCCCcEEEEECCCCccccccccccCCCcccee
Confidence 99999999999888766555444444444443
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=300.82 Aligned_cols=288 Identities=13% Similarity=0.178 Sum_probs=249.8
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ...++.+...+..|++|+....+ ....+
T Consensus 28 l~~h~~~v~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~~--------------------------------~~~~~ 70 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-----EGDLLFSCSKDSSASVWYSLNGE--------------------------------RLGTL 70 (369)
T ss_dssp EECCSSCEEEEEECT-----TSCEEEEEESSSCEEEEETTTCC--------------------------------EEEEE
T ss_pred EEEeeceEEEEEEcC-----CCCEEEEEeCCCEEEEEeCCCch--------------------------------hhhhh
Confidence 455555555544432 23455666677889999865332 12246
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQN 215 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~ 215 (715)
.+|...|++++|++++++|++++.||.|+|||+.+++.+..+. +...|.+++|++++++|++++.+ +.|++||+
T Consensus 71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 6899999999999999999999999999999999999988888 88999999999999999999998 99999998
Q ss_pred CCCc-----------eeeeecCCCC--CeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCC
Q 005096 216 NMNN-----------VKANKSAHKE--SVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 216 ~~~~-----------~~~~~~~h~~--~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spd 281 (715)
.... ....+..+.. .+.+++|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD 229 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC
Confidence 7653 2223344554 899999999999999999999999999998 7888889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC--------------eEEEEECCCCeEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--------------IIKLYDIRAMKEL 347 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg--------------~I~iwDl~t~~~~ 347 (715)
+++|++++.|+.|++||+++++.+..+. +...+.+++|++++++|++++.++ .|++||+.+++.+
T Consensus 230 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 230 LTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999999999999999999888887 778899999999999999999888 8999999999999
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..+..|...|++++|++ ++++|++++.||.|+||+++...
T Consensus 309 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 309 GRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred hheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 99999999999999999 88999999999999999997643
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=306.56 Aligned_cols=252 Identities=19% Similarity=0.324 Sum_probs=223.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iw 213 (715)
..+.+|.+.|++++|++++++|++++.||.|+|||+. +.+.+..+..|...|++++|+++ +++|++++.||.|+||
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4578999999999999999999999999999999988 66778889999999999999977 8999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcC-------
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHP------- 280 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~sp------- 280 (715)
|+.+++ ....+..|...|.+++|+++ +.+|++++.|+.|++||+++.. ....+..|...|.+++|++
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 999886 66777889999999999999 9999999999999999998763 4456678899999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005096 281 ------TKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (715)
Q Consensus 281 ------dg~~L~sgs~Dg~I~iwDl~s~~----~~~~~~~~~~~I~sl~~spd---g~~Lasgs~dg~I~iwDl~t~~-- 345 (715)
++++|++++.|+.|++||+++++ .+..+..|...|++++|+++ +++|++++.||.|+|||++++.
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 68999999999999999998765 34567789999999999999 8999999999999999999864
Q ss_pred ---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 346 ---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
.+.....+...|++++|++ ++.+|++++.||.|++|+++.....
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 2222334888999999999 7889999999999999999765443
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.6e-35 Score=318.48 Aligned_cols=281 Identities=18% Similarity=0.273 Sum_probs=239.8
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-
Q 005096 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN- 218 (715)
Q Consensus 146 ~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~- 218 (715)
....++++++...++ +++.||.|+|||+.+. +....+.+|...|++++|++ ++++|++++.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345688888875544 5788999999998664 23456778999999999999 8999999999999999999887
Q ss_pred ------ceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEe--cccCCceEEEEEcCCCCEEEEEe
Q 005096 219 ------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 219 ------~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l--~~~~~~I~si~~spdg~~L~sgs 289 (715)
+.+..+..|...|.+++|++++ ++|++++.|++|+|||+++++.+..+ ..|...|.+++|++++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5567788999999999999998 79999999999999999999999999 78999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEe-ccCCCc-eEEEEEcCCCCEEEEE---ECCCeEEEEECCCCeE-EEEee-cCCCCeEEEEE
Q 005096 290 KDSLVKLWDAKSGRELCSF-HGHKNM-VLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKE-LESFR-GHRKDVTALAW 362 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~-~~~~~~-I~sl~~spdg~~Lasg---s~dg~I~iwDl~t~~~-~~~~~-~h~~~V~~l~~ 362 (715)
.|+.|+|||+++++.+..+ ..|... +.+++|++++++|+++ +.|+.|++||+++++. +.... .+...|.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 677765 8999999999999999 7899999999998765 33333 46778999999
Q ss_pred ccCCCCEE-EEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 363 HPFHEEYF-VSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 363 sp~~~~~l-~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++ ++.+| ++++.||.|++||+.+.......+.. |...|++++|++++.++++ .|+.+++|++..
T Consensus 276 s~-~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 276 DP-DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ET-TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred cC-CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 99 56666 46668999999999988753333333 4589999999999988764 577999999975
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=345.11 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=202.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
...+|...|++++|++++++||+|+.||+|+|||..+.+....+ .|...|.+++|++ +++|++++.|++|+|||++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34589999999999999999999999999999999887665554 4788999999999 889999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE-----------EEecccCCceEEEEEcCC-CCEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-----------RSLTGHGWDVKSVDWHPT-KSLLV 286 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~-----------~~l~~~~~~I~si~~spd-g~~L~ 286 (715)
+.+..+. +...|++++|++++++|++|+.||+|++||+++.+.. ..+.+|...|++|+|+|+ +.+|+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 8887775 6689999999999999999999999999999887754 234568889999999996 46899
Q ss_pred EEeCCCcEEEEECCCCceeEEeccC------------------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHGH------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~~------------------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+++.|+.| |||+++++.+..+..+ ...|++++|++++++|++++.|+.|+|||+++++.+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999988888755 4679999999999999999999999999999988765
Q ss_pred E--ee---c-------------CCCCeEEEEEccC----CCCEEEEEeCC-----CcEEEEE
Q 005096 349 S--FR---G-------------HRKDVTALAWHPF----HEEYFVSGSLD-----GSIFHWL 383 (715)
Q Consensus 349 ~--~~---~-------------h~~~V~~l~~sp~----~~~~l~sgs~D-----G~I~iwd 383 (715)
. +. . +...|++++|++. +..+|++|+.| ..|++|+
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 4 21 1 2346899999542 23456666544 2455555
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=306.96 Aligned_cols=255 Identities=20% Similarity=0.367 Sum_probs=223.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTV 252 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V 252 (715)
+.+..+.+|...|++++|++++++|++++.||.|+|||+. +.+....+..|...|.+++|+++ +++|++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998 55677788899999999999976 8999999999999
Q ss_pred EEEECCCCe--eEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcC----
Q 005096 253 KVWDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ---- 322 (715)
Q Consensus 253 ~iwdl~~~~--~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~sp---- 322 (715)
++||+++++ .+..+..|...|.+++|+++ +++|++++.|+.|++||+++.. ....+..|...|.+++|++
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999887 67778889999999999999 8999999999999999999873 3445677899999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----EEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCC
Q 005096 323 ---------NGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 323 ---------dg~~Lasgs~dg~I~iwDl~t~~----~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~ 387 (715)
++++|++++.|+.|++||+++++ .+..+..|...|.+++|++++ +.+|++++.||.|+|||++..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998754 456778899999999999943 899999999999999999876
Q ss_pred Cce--EEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 388 TPQ--VEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 388 ~~~--~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
... ..+.. .|...|++++|++++.+|++++.||.|+||+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 432 22222 378899999999999999999999999999997543
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.6e-34 Score=304.41 Aligned_cols=275 Identities=16% Similarity=0.201 Sum_probs=235.4
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latg 162 (715)
.++.+...+..|++|+....+. .....+.+|...|++++|++++++|+++
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKW------------------------------VQVHELKEHNGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEE------------------------------EEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCEEEEEeCCCCcE------------------------------EeeeeecCCCCcccEEEEeCCCCEEEEE
Confidence 3455555678999998753320 0223566899999999999999999999
Q ss_pred eCCCeEEEEeCCCCceEEEE--eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeeeecCCCCCeEEEEE
Q 005096 163 SQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKSAHKESVRDLSF 236 (715)
Q Consensus 163 s~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~ 236 (715)
+.||.|+|||+++++....+ ..|...|.+++|++++++|++++.|+.|++||++... .......|...|.+++|
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 99999999999888755444 6688999999999999999999999999999998876 23344678899999999
Q ss_pred ecCCCEEEEEECCCcEEEEEC------------------CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 237 CRTDLKFCSCSDDTTVKVWDF------------------ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl------------------~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
++++++|++++.|+.|++||+ ..++.+..+..|...|.+++|++++++|++++.|+.|++||
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999999995 36778888888999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC--CeE--E---------------------------
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--MKE--L--------------------------- 347 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t--~~~--~--------------------------- 347 (715)
+++++.+..+..|...|.+++|++++++|+++ .|+.|++||+++ ++. +
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 99999999999999999999999999988887 899999999987 421 0
Q ss_pred ---------EEe-ecCCCCeEEEEEccCCC---CEEEEEeCCCcEEEEEcCCCC
Q 005096 348 ---------ESF-RGHRKDVTALAWHPFHE---EYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 348 ---------~~~-~~h~~~V~~l~~sp~~~---~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..+ .+|...|++++|++.++ .+|++++.||.|++||+++..
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 48999999999886566 999999999999999986543
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-33 Score=310.16 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=236.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEecc------------------------------------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAH------------------------------------ 185 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~---~~~~l~~h------------------------------------ 185 (715)
.+|.+++|++||++|+++ .++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 57799999999888 55555432
Q ss_pred ------------------CCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCceeeeec--CCCCCeEEEEEecCCCE
Q 005096 186 ------------------DHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNN--MNNVKANKS--AHKESVRDLSFCRTDLK 242 (715)
Q Consensus 186 ------------------~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~--~~~~~~~~~--~h~~~I~~l~~spd~~~ 242 (715)
...|++++|++++++| ++++.||.|+|||+. +++.+..+. .+...|.+++|++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 3369999999999996 889999999999998 777777665 56789999999999999
Q ss_pred EEEEECCCcEEEEECCCCeeEE----EecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-eccCCCc
Q 005096 243 FCSCSDDTTVKVWDFARCQEER----SLTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNM 314 (715)
Q Consensus 243 Las~s~Dg~V~iwdl~~~~~~~----~l~~~~~~I~si~~spd---g~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~ 314 (715)
|++++.|+.|++||+.+.+... .+.+|...|++++|+++ +++|++++.|+.|+|||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998776544 67789999999999999 89999999999999999999988877 5589999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-------------------------CCCCeEEEEEccCCCCE
Q 005096 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-------------------------HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-------------------------h~~~V~~l~~sp~~~~~ 369 (715)
|++++|+ ++++|++++.|+.|+|||+++++.+..+.. ....|.+++|++ ++.+
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPF 321 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCE
Confidence 9999999 999999999999999999999998888763 345799999999 7888
Q ss_pred EEEEe-CCCcEEEEEc--CCCC--ceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecCCCCC
Q 005096 370 FVSGS-LDGSIFHWLV--GHET--PQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNRPGD 432 (715)
Q Consensus 370 l~sgs-~DG~I~iwd~--~~~~--~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~~~~~ 432 (715)
|++++ .|+.|+||++ .... .....+..+ ..|++++|++++.++++++. +..|.||.++....
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence 88888 8999999999 4332 233344455 78999999996544444343 55689999876543
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.6e-33 Score=305.82 Aligned_cols=248 Identities=23% Similarity=0.409 Sum_probs=222.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|...|+||+|++||++||+|+.||+|+|||+++++.+..+.+|...|.+++|+ +.+|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 466899999999999999999999999999999999999999999999999999884 789999999999999998864
Q ss_pred -ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe----eEEEecccCCceEEEEEcCCCC-EEEEE--eC
Q 005096 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKS-LLVSG--GK 290 (715)
Q Consensus 219 -~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~----~~~~l~~~~~~I~si~~spdg~-~L~sg--s~ 290 (715)
..+..+..|...+..+.|++++++|++++.|+.|++||+.+++ .+.....|...|.+++|++++. +|+++ +.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 4566778999999999999999999999999999999997654 3456677889999999999765 55543 57
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
|++|+|||+++++++..+.. ...+.++.|+++++.|++++ .|+.|+|||+++++.+.++.+|...|++|+|++ ++.
T Consensus 300 D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~ 377 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 377 (420)
T ss_dssp TCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 99999999999999888874 45789999999999998876 789999999999999999999999999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCCCce
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
+|++|+.|++|+|||+......
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCeEEEEECCCCCcc
Confidence 9999999999999999765443
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=298.82 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=213.4
Q ss_pred CCCccEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-eEEEEeccCCCEEEEEE------cCCCCEEEEEeCCCcEE
Q 005096 142 KNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVW------SHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 142 ~H~~~I~~l~~spd---g~~Latgs~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~------spdg~~L~tgs~dg~I~ 211 (715)
+|...|++++|+++ +++|++++.||.|+|||+.+.+ .+..+..|...|.+++| ++++++|++++.|+.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68899999999999 6999999999999999999988 88899999999999965 67899999999999999
Q ss_pred EEeCCCCc-eeeeecCCCC----CeEEEE----EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC--
Q 005096 212 YWQNNMNN-VKANKSAHKE----SVRDLS----FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-- 280 (715)
Q Consensus 212 iwd~~~~~-~~~~~~~h~~----~I~~l~----~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-- 280 (715)
+||+.+++ ....+..+.. .|.+++ |++++++|++++.|+.|++||+++.+.... ..+...|.+++|++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 99999876 5666655444 788888 678999999999999999999999877544 55788999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceeEEec-----cCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC---------
Q 005096 281 -TKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM--------- 344 (715)
Q Consensus 281 -dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~--------- 344 (715)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.||.|+|||+++.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 89999999999999999998876655544 8999999999999998 8999999999999999753
Q ss_pred ----------eEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCCcEEEEEcCCCC
Q 005096 345 ----------KELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHET 388 (715)
Q Consensus 345 ----------~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG~I~iwd~~~~~ 388 (715)
+.+..+..|...|++++|++ ++.+|+ +++.||.|+|||+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 46778889999999999999 555555 89999999999997643
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=288.53 Aligned_cols=284 Identities=19% Similarity=0.285 Sum_probs=242.4
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...+.+..+ ....++.+...++.|++|+....+ ....
T Consensus 13 ~l~~h~~~v~~~~~------~~~~~l~s~~~dg~v~vw~~~~~~--------------------------------~~~~ 54 (313)
T 3odt_A 13 TLKGHDQDVRDVVA------VDDSKVASVSRDGTVRLWSKDDQW--------------------------------LGTV 54 (313)
T ss_dssp EECCCSSCEEEEEE------EETTEEEEEETTSEEEEEEESSSE--------------------------------EEEE
T ss_pred HhhCCCCCcEEEEe------cCCCEEEEEEcCCcEEEEECCCCE--------------------------------EEEE
Confidence 35566666655444 123345666778899999874321 1224
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
+..|...|++++|++++++|++++.||.|++|++.+. +.+..+..|...|.+++| ++++|++++.|+.|++||
T Consensus 55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-- 130 (313)
T 3odt_A 55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-- 130 (313)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--
T ss_pred eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--
Confidence 5578999999999999999999999999999997654 567788899999999999 678999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
..+....+..|...|.+++|++ ++++|++++.|+.|++|| ..+....+.. +...|.+++|++++. |++++.|+.|
T Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 207 (313)
T 3odt_A 131 EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI 207 (313)
T ss_dssp TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeE
Confidence 6677778888999999999998 899999999999999999 4456666666 889999999999988 9999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
++||+++++.+..+..|...|++++|++++ .|++++.|+.|++||+++++.+..+..|...|.+++|++ ++. +++++
T Consensus 208 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~ 284 (313)
T 3odt_A 208 KLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGS 284 (313)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEE
T ss_pred EEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEe
Confidence 999999999999999999999999999999 588999999999999999999999999999999999999 555 66799
Q ss_pred CCCcEEEEEcCCCCceE
Q 005096 375 LDGSIFHWLVGHETPQV 391 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~ 391 (715)
.||.|++||+++.....
T Consensus 285 ~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 285 SDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TTSCEEEEESCGGGCCC
T ss_pred CCCcEEEEeCCCCceee
Confidence 99999999998765443
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.5e-33 Score=301.45 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=221.7
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcC-CCCEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTP-TGRRLIT 161 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~sp-dg~~Lat 161 (715)
.++.+...+..|++|+....+.. ....+.+|...|++++|++ ++++|++
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKT------------------------------SFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCE------------------------------EEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCcccc------------------------------eeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 35556666778888887633211 1113457999999999999 7899999
Q ss_pred EeCCCeEEEEeCCCCceEEEEecc---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 238 (715)
++.|+.|+|||+.+ +.+..+..+ ...|.+++|++++++|++++.|+.|++||+ .++.+..+..|...|.+++|++
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999999986 555555544 478999999999999999999999999999 4667778889999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCC----CeeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 239 TDL-KFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 239 d~~-~Las~s~Dg~V~iwdl~~----~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
+++ +|++++.|++|++||+++ ...+..+ .|...|.+++|++ ++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 998 999999999999999987 5566666 6899999999999 99999999999999999999988776665432
Q ss_pred -----------------CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEE
Q 005096 313 -----------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 313 -----------------~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sg 373 (715)
..+.+++|++++++ +++.|+.|+|||+++++.+..+.. +...+.+++|++ ++.+|+++
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~ 370 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASG 370 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEe
Confidence 23444666666665 667899999999999999999987 457788889999 88899999
Q ss_pred eCCCcEEEEEcCC
Q 005096 374 SLDGSIFHWLVGH 386 (715)
Q Consensus 374 s~DG~I~iwd~~~ 386 (715)
+ ||.|+|||+++
T Consensus 371 s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 371 M-GFNILIWNRED 382 (383)
T ss_dssp E-TTEEEEEECC-
T ss_pred c-CCcEEEEecCC
Confidence 7 99999999864
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-34 Score=309.29 Aligned_cols=271 Identities=16% Similarity=0.206 Sum_probs=216.2
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
.+++.+...+..|++|+...... .....+.+|...|++++|++++++|++
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGW------------------------------KHARTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEE------------------------------EECCCBCCCSSCEEEEEECTTTCCEEE
T ss_pred CCEEEEecCCCEEEEEEccCCce------------------------------EEEEEEecCCceEEEEEEeCCCCEEEE
Confidence 34566666788899998753210 112256789999999999999999999
Q ss_pred EeCCCeEEEEeCCCCc---eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecC-CCCCeEEE
Q 005096 162 GSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSA-HKESVRDL 234 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~-h~~~I~~l 234 (715)
++.|++|+|||+.+++ ....+..|...|.+++|++++++|++++.|+.|++||+++++ ....+.. |...|.++
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999999999999876 677788899999999999999999999999999999999876 3566666 99999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECC------------------CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFA------------------RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~------------------~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+|++++++|++++.|++|++||++ .++.+..+ .|...|.+++|++++++|++++.|+.|+|
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999985 24455566 88999999999999999999999999999
Q ss_pred EECCCCce----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-E-------------------------
Q 005096 297 WDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E------------------------- 346 (715)
Q Consensus 297 wDl~s~~~----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~------------------------- 346 (715)
||+++++. +..+..|...|.+++|++++++|++++.++.+ +|+..... .
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99999887 77888899999999999999999998766655 66654211 0
Q ss_pred ----E------EEe----------------ecCCCCeEEEEEccCCCC---EEEEEeCCCcEEEEEc
Q 005096 347 ----L------ESF----------------RGHRKDVTALAWHPFHEE---YFVSGSLDGSIFHWLV 384 (715)
Q Consensus 347 ----~------~~~----------------~~h~~~V~~l~~sp~~~~---~l~sgs~DG~I~iwd~ 384 (715)
+ ..+ ..|...|+++++.+.++. .|++++.||.|+|||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 111 128899999998764444 7999999999999985
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.2e-33 Score=298.18 Aligned_cols=284 Identities=14% Similarity=0.171 Sum_probs=225.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~ 217 (715)
.+..|...|++++|++||++|++|+.++ ++|||+++++....... ..+..+++..+++++ ++++.|+.|+|||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4578999999999999999999998776 88999988766655443 357788888888887 5677889999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEE--EeCCCcE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVS--GGKDSLV 294 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~s--gs~Dg~I 294 (715)
++.+..+. +...|.+++|+++ .++++ .|+.|++||+.+. +.+..+.. ....+++++ +++++ ++.||.|
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred CcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 98888775 6678999999865 34444 4789999999887 66655554 344556665 66666 5789999
Q ss_pred EEEECCCCc----------------eeEEeccCCCceEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEee-c-CCC
Q 005096 295 KLWDAKSGR----------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFR-G-HRK 355 (715)
Q Consensus 295 ~iwDl~s~~----------------~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~-I~iwDl~t~~~~~~~~-~-h~~ 355 (715)
++||+++++ ++..+.+|...|++++|++++++|++++.|++ |+|||+++++.+..+. + |..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 999999865 26788999999999999999999999999998 9999999999999998 5 999
Q ss_pred CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE-EE---------------------eeccCCCEEEEEEcCCCCEE
Q 005096 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EI---------------------HNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~-~~---------------------~~~h~~~V~~l~~spdg~~L 413 (715)
.|++++|++ ++++|++++.|++|+|||++...... .. ..........++|++|+++|
T Consensus 242 ~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l 320 (355)
T 3vu4_A 242 DVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320 (355)
T ss_dssp CEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred cEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence 999999999 89999999999999999997643111 00 11112234678999999999
Q ss_pred EEEECCCeEEEEecCCCCCccc
Q 005096 414 CSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
++++.||.+++|++...+...+
T Consensus 321 ~~~~~dg~~~~~~~~~~~~~~~ 342 (355)
T 3vu4_A 321 VVWPHTRMIETFKVVFDDEMER 342 (355)
T ss_dssp EEETTTTEEEEEEEEEETTTTE
T ss_pred EEEeCCCeEEEEEEEcCCCCce
Confidence 9999999999999976554433
No 97
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.2e-32 Score=302.82 Aligned_cols=250 Identities=22% Similarity=0.414 Sum_probs=220.9
Q ss_pred EEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CceeeeecCCCCCeEEEEEecCCC-EEEEEE
Q 005096 180 MILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNM----------NNVKANKSAHKESVRDLSFCRTDL-KFCSCS 247 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~----------~~~~~~~~~h~~~I~~l~~spd~~-~Las~s 247 (715)
.....|.+.|++++|+++ +++|++++.||.|+|||+.. ......+..|...|.+++|++++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455679999999999997 67999999999999999876 466677789999999999999988 999999
Q ss_pred CCCcEEEEECCCCee-------EEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceE
Q 005096 248 DDTTVKVWDFARCQE-------ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVL 316 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~-------~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~ 316 (715)
.||+|++||+.+... ...+..|...|.+++|++ ++.+|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 456678999999999999 6789999999999999999987 56777888999999
Q ss_pred EEEEcCCCC-EEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC------
Q 005096 317 CVKWNQNGN-WVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------ 388 (715)
Q Consensus 317 sl~~spdg~-~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~------ 388 (715)
+++|++++. +|++++.||.|+|||+++ ...+..+..|...|++++|++++..+|++++.|+.|+|||+....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888999999999999999666789999999999999997632
Q ss_pred -------ceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecCC
Q 005096 389 -------PQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 389 -------~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~~ 429 (715)
.......+|...|++++|++++. +|++++.||.|+||+++.
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 45556667889999999999998 999999999999999853
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=294.06 Aligned_cols=340 Identities=16% Similarity=0.245 Sum_probs=236.6
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ....++.+...++.|++|+....+....... . ..........
T Consensus 39 ~~~h~~~v~~~~~s~----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~------------~~~~~~~~~~ 95 (408)
T 4a11_B 39 ERIHGGGINTLDIEP----VEGRYMLSGGSDGVIVLYDLENSSRQSYYTC-------K------------AVCSIGRDHP 95 (408)
T ss_dssp CCCCSSCEEEEEECT----TTCCEEEEEETTSCEEEEECCCCSSSSCEEE-------C------------EEEEECTTCT
T ss_pred eeccCCcEEEEEEec----CCCCEEEEEcCCCeEEEEECCCCcccceEec-------c------------cccccccccc
Confidence 344555554444322 0234566667788999999875542221100 0 0000001123
Q ss_pred CCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCC
Q 005096 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 141 ~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~tgs~dg~I~iwd~~ 216 (715)
.+|...|++++|++ ++++|++++.||.|+|||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 57999999999999 78899999999999999999998888776 7788999999885 4599999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCe-eEEEe---------------cccCCceEEEEEc
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQ-EERSL---------------TGHGWDVKSVDWH 279 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~-~~~~l---------------~~~~~~I~si~~s 279 (715)
+++....+..|...|.+++|++++. +|++++.|+.|++||+++.. .+..+ ..|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9998889999999999999999998 58999999999999997765 33333 4678899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
+++++|++++.|+.|++||+++++.+..+..+ ...+........+..+++++.|+.|++||+.+++.+..+.+|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 99999999999999999999988765544322 1122222223345567777889999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEECCCeEEEEecCC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..|++++|++ ++.+|++++.||.|++||+++...+...... .....+.+ +...+.+.+.|+.+++|+...
T Consensus 335 ~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 335 KTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDET----TTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred CeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCce----EeccccccccceeecccCccCceeecCCcc
Confidence 9999999999 8899999999999999999887654433221 11122333 344566777899999998753
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=310.46 Aligned_cols=271 Identities=17% Similarity=0.192 Sum_probs=226.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Cc---eeee
Q 005096 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNM---NN---VKAN 223 (715)
Q Consensus 152 ~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~---~~---~~~~ 223 (715)
|+++++.+++++ +|+ .+++.+..+ .+|.+.|++++|++ ++++|++|+.||.|+|||+.+ +. ....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 566777666654 487 456777888 88999999999999 999999999999999999876 32 1222
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeeEEEecc------------cCCceEEEE--EcCCCCEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTG------------HGWDVKSVD--WHPTKSLLV 286 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~~~~l~~------------~~~~I~si~--~spdg~~L~ 286 (715)
+ .|...|.+++|++++++|++++.|++|++||++ +++.+..+.. +...+.++. +++++++|+
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 2 589999999999999999999999999999994 4444333221 445566666 567899999
Q ss_pred EEeCCCcEEEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEc
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWH 363 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~s 363 (715)
+++.|+.|++||+++++.+..+.. |...|++++|++++++|++++.||.|+|||+++++.+..+. .|...|++++|+
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 999999999999999999999987 78999999999999999999999999999999999999886 788899999877
Q ss_pred cC---CCCEEEEEeCCCcEEEEEcCCCCceEEEee-------------------------ccCCCEEEEEEcCCCCEEEE
Q 005096 364 PF---HEEYFVSGSLDGSIFHWLVGHETPQVEIHN-------------------------VHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 364 p~---~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-------------------------~h~~~V~~l~~spdg~~L~s 415 (715)
+. ++.+|++++.||.|+|||+++......+.. .|...|++++|+ ++.+|++
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 62 567999999999999999988765544431 156679999999 8899999
Q ss_pred EECCCeEEEEecCCCC
Q 005096 416 GSNDHTTKFWCRNRPG 431 (715)
Q Consensus 416 gs~Dg~I~iWdl~~~~ 431 (715)
++.|+.|++||+....
T Consensus 346 ~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 346 DEATSSIVMFSLNELS 361 (437)
T ss_dssp EGGGTEEEEEETTCGG
T ss_pred cCCCCeEEEEECCCcc
Confidence 9999999999997644
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.4e-32 Score=302.59 Aligned_cols=239 Identities=26% Similarity=0.451 Sum_probs=216.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|...|++++| ++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||+.++
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC
Confidence 46789999999999 78899999999999999999999999999999999999996 569999999999999999887
Q ss_pred cee---eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 219 NVK---ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 219 ~~~---~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
... ..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++|+ +++|++++.|+.|+
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR 319 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred CCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence 654 667889999999999 78899999999999999999999999999999999999995 78999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------EEEEeecCCCCeEEEEEccCC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPFH 366 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---------~~~~~~~h~~~V~~l~~sp~~ 366 (715)
+||+++++.+..+.+|...|.+++| ++++|++++.||.|+|||+++++ .+..+..|...|++++| +
T Consensus 320 iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~ 394 (435)
T 1p22_A 320 LWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---D 394 (435)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---C
T ss_pred EEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---C
Confidence 9999999999999999999999999 78999999999999999998766 78899999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCce
Q 005096 367 EEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
+.+|++++.||.|++||+.+....
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SSCEEECCSSSEEEEEC-------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCc
Confidence 678999999999999999776543
No 101
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-33 Score=316.30 Aligned_cols=255 Identities=10% Similarity=0.076 Sum_probs=205.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceE----EEEeccCCCEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCce------
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHN------DNWMVSGDDGGAIKYWQNNMNNV------ 220 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~----~~l~~h~~~V~~l~~spd------g~~L~tgs~dg~I~iwd~~~~~~------ 220 (715)
+.|++++.|++|+|||+.+++.. ..+..|.+.|.+|+|+++ +.+||+++.||+|+|||+..+..
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 34444667899999998876642 346678899999999986 57999999999999999976532
Q ss_pred -----eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEE--EEcCCC-CEEEEEeCC
Q 005096 221 -----KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSV--DWHPTK-SLLVSGGKD 291 (715)
Q Consensus 221 -----~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si--~~spdg-~~L~sgs~D 291 (715)
...+..|...|++++|+++ ..|++|+.||+|++||++++. ....+.+|...|++| +|++++ ++|++++.|
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC
Confidence 2356778899999999976 589999999999999998763 445678899999999 578887 899999999
Q ss_pred CcEEEEECCCCceeEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
++|+|||+++++++..+.+|.. .|.+++|+|+++.|++++.|++|+|||++++.++..+.+|...|++|+|+| ++.+
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~ 411 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPM 411 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCB
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCe
Confidence 9999999999887777766543 588999999999999999999999999999998888999999999999999 7889
Q ss_pred EEEEeCCCcEEEEEcCCCCceE-E-Ee-eccCCCEEEEEEcCCCCEE
Q 005096 370 FVSGSLDGSIFHWLVGHETPQV-E-IH-NVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~-~-~~-~~h~~~V~~l~~spdg~~L 413 (715)
|++|+.||+|+|||+....... + .. ..+...|++++|++++..+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 412 VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999986542111 0 00 0112257899999998854
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-31 Score=276.60 Aligned_cols=245 Identities=22% Similarity=0.390 Sum_probs=216.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|...|++++|++++++|++|+.||+|+|||+++++.+..+.+|...+.++.+ ++++|++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence 45689999999999999999999999999999999999999999999999887766 5689999999999999998875
Q ss_pred -ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----EEEecccCCceEEEEEcCCCCEE---EEEeC
Q 005096 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLL---VSGGK 290 (715)
Q Consensus 219 -~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~----~~~l~~~~~~I~si~~spdg~~L---~sgs~ 290 (715)
..+..+..|...+..+.+++++++|++++.|++|++||+++++. ......+...|.++++++++..+ ++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 45567788999999999999999999999999999999987543 34455678889999999877633 35667
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
++.|++||.+......... +...+.++.|+++++.+++++ .|+.|+|||+++++.+.++.+|...|++|+|++ ++.
T Consensus 220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~ 297 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 297 (318)
T ss_dssp TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 8999999999887766654 677799999999999888765 799999999999999999999999999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~ 387 (715)
+|++++.||+|+|||+.+.
T Consensus 298 ~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTEEEEECCSCC
T ss_pred EEEEEecCCeEEEEECCCC
Confidence 9999999999999998653
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.2e-32 Score=294.40 Aligned_cols=246 Identities=15% Similarity=0.257 Sum_probs=215.2
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------ceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCc
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~-------~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~ 209 (715)
.+.+|.+.|++++|++ ++++|++|+.||+|+|||+.++ +.+..+.+|...|.+++|++++ ++|++++.|+.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 4678999999999999 9999999999999999999987 6688899999999999999998 69999999999
Q ss_pred EEEEeCCCCceeeee--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCc-eEEEEEcCCCCEE
Q 005096 210 IKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWD-VKSVDWHPTKSLL 285 (715)
Q Consensus 210 I~iwd~~~~~~~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~-I~si~~spdg~~L 285 (715)
|+|||+++++.+..+ ..|...|.+++|++++++|++++.|+.|++||+++++.+..+ ..|... +.+++|++++++|
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 999999999988888 789999999999999999999999999999999999998888 677765 8999999999999
Q ss_pred EEE---eCCCcEEEEECCCCce-eEEe-ccCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeE-EEEeec--CCCC
Q 005096 286 VSG---GKDSLVKLWDAKSGRE-LCSF-HGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKE-LESFRG--HRKD 356 (715)
Q Consensus 286 ~sg---s~Dg~I~iwDl~s~~~-~~~~-~~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~-~~~~~~--h~~~ 356 (715)
+++ +.|+.|++||+++++. +... ..+...|.+++|++++++|+++ +.|+.|++||+++++. +..+.. +...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7899999999998765 3332 2467789999999999999754 4799999999998773 444443 5689
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
|.+++|++ ++.++++ .++.+++|++.+.
T Consensus 316 v~~~~~sp-~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMP-KRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECC-GGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEec-cccccee--cceeEEEEEcCCC
Confidence 99999999 6666654 5669999998654
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=326.51 Aligned_cols=251 Identities=20% Similarity=0.328 Sum_probs=221.4
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iw 213 (715)
..+.+|.+.|++++|++++++|++|+.||.|+|||+. +.+.+..+.+|.+.|++++|+++ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999987 56778889999999999999988 8999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC--eeEEEecccCCceEEEEEcC-------
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHP------- 280 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~--~~~~~l~~~~~~I~si~~sp------- 280 (715)
|+.+++ ....+..|...|.+++|+++ +++|++++.||+|++||+++. .....+..|...|.+++|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 66777889999999999999 999999999999999999876 34456678899999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005096 281 ------TKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (715)
Q Consensus 281 ------dg~~L~sgs~Dg~I~iwDl~s~----~~~~~~~~~~~~I~sl~~spd---g~~Lasgs~dg~I~iwDl~t~~-- 345 (715)
++++|++++.||.|++||++++ ..+..+..|...|++++|+++ +++|++++.||.|+|||+++++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999877 455677889999999999999 8999999999999999999864
Q ss_pred ---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 346 ---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.+.....|...|++++|++ ++.+|++++.||.|++||++....
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSSC
T ss_pred ceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCCC
Confidence 3344456888999999999 788999999999999999986543
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=293.03 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=219.4
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcee
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---------MNNVK 221 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---------~~~~~ 221 (715)
.+..++++|++|+.||+|+|||+.+++.+..+. ...|.++.|+++ |++++.|++|++|+.+ +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344577899999999999999999999888876 466778888877 9999999999999765 44433
Q ss_pred eee-cCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 222 ANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 222 ~~~-~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
..+ ..|...|.+++|++ ++++|++++.|++|++||+++++.+..+. .+...|++++|++++.+|++|+.|+.|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 333 36678899999999 99999999999999999999988876664 345579999999999999999999999999
Q ss_pred ECCCCcee-EEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCeE--EEEEccCCCCEE
Q 005096 298 DAKSGREL-CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVT--ALAWHPFHEEYF 370 (715)
Q Consensus 298 Dl~s~~~~-~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~---h~~~V~--~l~~sp~~~~~l 370 (715)
|+++++.+ ..+.. |...|++++|++++.+|++++ |+.|+|||+++.+.+..+.. +...+. +++|++ ++.+|
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEE
Confidence 99999887 78887 999999999999999999999 55999999999877655443 334444 699999 88999
Q ss_pred EEEeC-CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC---CCCEEEEEECCCeEEEEecC
Q 005096 371 VSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP---IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sgs~-DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~L~sgs~Dg~I~iWdl~ 428 (715)
++++. |+.|+||+++........ ..+..++|.+ +...|++++.|+.++++-..
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99888 999999999776655444 4678888988 88899999999999998643
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-32 Score=301.80 Aligned_cols=247 Identities=17% Similarity=0.220 Sum_probs=203.2
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++.........+ ...+.+++|++++++|++|+.||.|++||+
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 4678999999999997 7899999999999999999876554444433 345789999999999999999999999998
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeeEEE---ecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERS---LTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~~~~~---l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
+. +.+..+..|...|.+++|++++. +|++++.|++|+|||+++.+.... ...|...|++++|++++++|++++.|
T Consensus 239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D 317 (435)
T 4e54_B 239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317 (435)
T ss_dssp SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence 75 45567788999999999999875 788999999999999987654433 35688999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCC------ceEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCeEEEEee-c
Q 005096 292 SLVKLWDAKSGRELCSFHGHKN------MVLCVKWNQNGNWVLTAS------------KDQIIKLYDIRAMKELESFR-G 352 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~------~I~sl~~spdg~~Lasgs------------~dg~I~iwDl~t~~~~~~~~-~ 352 (715)
+.|+|||++++++...+..|.. .+..+.|++++.++++++ .++.|+|||..+++.+..+. .
T Consensus 318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 9999999999988877765432 234556777777777664 33579999999999988765 6
Q ss_pred CCCCeEEE-EEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 353 HRKDVTAL-AWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 353 h~~~V~~l-~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|...|.++ +|+| ++.+|++|+ |+.|+|||+++++
T Consensus 398 ~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 398 ESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC---
T ss_pred CCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCe
Confidence 77888887 6999 788888876 7899999997764
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=296.40 Aligned_cols=244 Identities=19% Similarity=0.392 Sum_probs=206.1
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeecCCC------------CCeEEEEEecCC-
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----------VKANKSAHK------------ESVRDLSFCRTD- 240 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-----------~~~~~~~h~------------~~I~~l~~spd~- 240 (715)
+.+.|++++|++++++|++|+.||.|+|||+.+++ ....+..|. ..|.+++|++++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999998776 467778888 889999999998
Q ss_pred -CEEEEEECCCcEEEEECCCCeeE---------------------------------------EE-ecccCCceEEEEEc
Q 005096 241 -LKFCSCSDDTTVKVWDFARCQEE---------------------------------------RS-LTGHGWDVKSVDWH 279 (715)
Q Consensus 241 -~~Las~s~Dg~V~iwdl~~~~~~---------------------------------------~~-l~~~~~~I~si~~s 279 (715)
.+|++++.|++|++||+.+.... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764432 12 35789999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CceeEE-------eccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE----
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKS-GRELCS-------FHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKE---- 346 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s-~~~~~~-------~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~---- 346 (715)
+++++|+++ .|+.|+|||+++ ++.+.. +..|...|++++|++++ ++|++++.|+.|+|||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 899999999994 444442 45788999999999998 9999999999999999999887
Q ss_pred EEEeecCCC------------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC--------------
Q 005096 347 LESFRGHRK------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT-------------- 400 (715)
Q Consensus 347 ~~~~~~h~~------------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~-------------- 400 (715)
+..+..|.. .|.+++|++ ++.+|++++. +.|+|||++........+..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 899999999 8999999998 999999998744444444455431
Q ss_pred -EEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 401 -VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 401 -V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+..++|++++.+|++++.||.|+|||+....
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3349999999999999999999999997644
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.8e-31 Score=295.60 Aligned_cols=253 Identities=21% Similarity=0.414 Sum_probs=223.6
Q ss_pred eEEEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CceEEEEeccCCCEEEEEEcCCCC-EE
Q 005096 134 KFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDN-WM 201 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~----------~~~~~~l~~h~~~V~~l~~spdg~-~L 201 (715)
++....+..|.+.|++++|+++ +++|++++.||.|+|||+.+ .+.+..+..|...|++++|+++++ +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 4445566789999999999997 68999999999999999876 677888999999999999999988 99
Q ss_pred EEEeCCCcEEEEeCCCCce-------eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC---eeEEEecccC
Q 005096 202 VSGDDGGAIKYWQNNMNNV-------KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC---QEERSLTGHG 270 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~-------~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~---~~~~~l~~~~ 270 (715)
++|+.||.|+||++..... ...+..|...|.+++|++ ++.+|++++.|+.|++||+++. +.+..+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999999987322 345568999999999999 6789999999999999999876 5667777899
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceeEEeccCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCC----
Q 005096 271 WDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRA---- 343 (715)
Q Consensus 271 ~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t---- 343 (715)
..|++|+|++++. +|++++.|+.|+|||+++ ...+..+..|...|++++|+++++ +|++++.|+.|+|||+++
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999999987 789999999999999998 567888888999999999999885 789999999999999987
Q ss_pred ----------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 344 ----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 344 ----------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.+.+..+.+|...|++++|++++..+|++++.||.|+||++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3667788889999999999994444999999999999999864
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.4e-30 Score=286.93 Aligned_cols=279 Identities=12% Similarity=0.039 Sum_probs=238.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE-----EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~-----~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..+.+++|+++++++++++.++.|++||+.+++.+. .+..|...|.+++|+++++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456699999977778888889999999999998887 345788899999999999999999999999999999998
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe--------C
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG--------K 290 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs--------~ 290 (715)
.+..+..|...+.+++|+++++++++++ .|+.|++||+++++.+..+.. ...+.+++|++++++|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 8888888999999999999999886555 799999999999988887765 45699999999999999888 5
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~L-asgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
|+.|++||+++++.+..+. +...+.+++|++++++| ++++.|+.|++||+++++.+..+. +...+.+++|++ ++++
T Consensus 282 dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~ 358 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKY 358 (433)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSE
T ss_pred CCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCE
Confidence 8899999999988776663 55678999999999765 556889999999999999888876 677899999999 6777
Q ss_pred EEEEeC---------------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC-CCeEEEEecCC
Q 005096 370 FVSGSL---------------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNR 429 (715)
Q Consensus 370 l~sgs~---------------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~ 429 (715)
|++++. ||.|++||+.+.+....+. +...+.+++|++++++|++++. |+.|++|+++.
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 777665 5799999998876554443 2568999999999999998875 99999999863
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=303.64 Aligned_cols=265 Identities=12% Similarity=0.105 Sum_probs=220.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
..+.-...|.+|+|++||++||+++.|++|+ |.+..+ .+.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 3455668999999999999999999999999 755554 347899999999999998 4666666654332
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-----ceEEEEEcCCCCEEEEEeCCCc
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-----DVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-----~I~si~~spdg~~L~sgs~Dg~ 293 (715)
. ...+ .+...|.+++|+|||.+||+++.||+|+|||.+. .+..+. |.. .|.+++|+|||++|++|+.||+
T Consensus 78 ~-~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 78 G-LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp C-SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred e-Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 2 2222 4578999999999999999999999999999644 556666 554 5999999999999999999999
Q ss_pred EEEEECCCCce-------eEEe----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEe-ecCCCCeE
Q 005096 294 VKLWDAKSGRE-------LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESF-RGHRKDVT 358 (715)
Q Consensus 294 I~iwDl~s~~~-------~~~~----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~-~~h~~~V~ 358 (715)
|+|||+++++. +.++ .+|..+|.+++|+||+ |++++.|+.|++||+.+.+. ..++ ..|...|.
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99999998753 5665 5677899999999999 88889999999999988773 3456 37889999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE--cCCCCEEEEEECCCeEEEEecC
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+++|+ +.+|++++ ++.|++||+.......... +|.+.|++++| ++|+..|+++++||+ ++|..+
T Consensus 231 svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99998 47888887 6999999998766533333 69999999999 999999999999999 999985
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-31 Score=289.98 Aligned_cols=246 Identities=13% Similarity=0.155 Sum_probs=202.3
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEe-----------CCCeEEEEeCCCCceEEE----E-----eccCCCEEEEEEcCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGS-----------QSGEFTLWNGQSFNFEMI----L-----QAHDHAIRSMVWSHN 197 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs-----------~dg~I~Iwd~~~~~~~~~----l-----~~h~~~V~~l~~spd 197 (715)
..|.+|.+.|.+++++ ++.+++|+ .|+.|++|++.+.+.... . ..++..+.+++|++|
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4678899999998875 45677664 467899998765432211 1 123456899999999
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE--EecccCCce
Q 005096 198 DNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDV 273 (715)
Q Consensus 198 g~~L~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--~l~~~~~~I 273 (715)
|++|++++ .|++|+|||+++++.+..+. |...|.+|+|++|+++|++++.| .+++|+..+++.+. ....|...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence 99987554 78999999999998888775 77789999999999999999865 56667666665543 345678889
Q ss_pred EEEEEcCCCCEEEEEeCCC----cEEEEECCCCce----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 274 KSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~~----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
.+++|++++++|++++.|+ .|++||+..... ...+..|...|++++|+||+++||+|+.|+.|+|||+++++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999887 688899876643 34567788999999999999999999999999999999999
Q ss_pred EEEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 346 ELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 346 ~~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.+..+ .+|...|++|+|+| ++++|++++.|++|+|||+....
T Consensus 303 ~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 99885 68999999999999 89999999999999999996543
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.7e-31 Score=278.61 Aligned_cols=280 Identities=13% Similarity=0.143 Sum_probs=232.7
Q ss_pred CcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCC
Q 005096 63 AHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNK 142 (715)
Q Consensus 63 ~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 142 (715)
+|...+.+..+.. ...++.+...+..|++|+....+.. .....+.+
T Consensus 9 ~h~~~v~~~~~s~-----~~~~l~~~~~d~~v~iw~~~~~~~~-----------------------------~~~~~~~~ 54 (342)
T 1yfq_A 9 APKDYISDIKIIP-----SKSLLLITSWDGSLTVYKFDIQAKN-----------------------------VDLLQSLR 54 (342)
T ss_dssp CCSSCEEEEEEEG-----GGTEEEEEETTSEEEEEEEETTTTE-----------------------------EEEEEEEE
T ss_pred CCCCcEEEEEEcC-----CCCEEEEEcCCCeEEEEEeCCCCcc-----------------------------ccceeeee
Confidence 4555555544433 2234555567789999987643210 01122347
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeC-CCCceEEEEec--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNG-QSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM- 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~-~~~~~~~~l~~--h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~- 217 (715)
|...|++++|+++++ +|++++.||.|++||+ .+++. ..+.. |...|.+++|++ +++|++++.|+.|++||+.+
T Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~ 132 (342)
T 1yfq_A 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNY 132 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHH
T ss_pred cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccc
Confidence 899999999999999 9999999999999999 77654 77788 999999999999 99999999999999999887
Q ss_pred --------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-Ce--eEEEecccCCceEEEEEcC-CCCEE
Q 005096 218 --------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQ--EERSLTGHGWDVKSVDWHP-TKSLL 285 (715)
Q Consensus 218 --------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~--~~~~l~~~~~~I~si~~sp-dg~~L 285 (715)
.+.+..+. +...|.+++|++++ |++++.|+.|++||+++ .. .......+...|.+++|++ ++++|
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 133 GDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp TTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence 66555555 88999999999876 99999999999999987 43 3344556788999999999 99999
Q ss_pred EEEeCCCcEEEEECCCC------ceeEEeccCCC---------ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 286 VSGGKDSLVKLWDAKSG------RELCSFHGHKN---------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~------~~~~~~~~~~~---------~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++++.|+.|+|||++.. +.+..+..|.. .|++++|++++++|++++.||.|++||+++++.+..+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence 99999999999999877 77778877755 8999999999999999999999999999999999999
Q ss_pred ecC-CCCeEEEEEccCCCCEEEEEeCCCc-EEEEEc
Q 005096 351 RGH-RKDVTALAWHPFHEEYFVSGSLDGS-IFHWLV 384 (715)
Q Consensus 351 ~~h-~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~ 384 (715)
..| ...|++++ + ++.+|++++.||. .+.|..
T Consensus 290 ~~~h~~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 290 AKFNEDSVVKIA--C-SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CCCSSSEEEEEE--E-CSSEEEEEEECTHHHHCSSS
T ss_pred hcccCCCceEec--C-CCCeEEEEecCCcccccccc
Confidence 998 99999999 6 8899999999998 555553
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.9e-31 Score=313.93 Aligned_cols=254 Identities=20% Similarity=0.362 Sum_probs=220.8
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEE
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKV 254 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~i 254 (715)
+..+.+|.+.|++++|++++++|++|+.||.|+|||+. +......+..|...|.+++|+++ +++|++++.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999988 45677788899999999999987 899999999999999
Q ss_pred EECCCCe--eEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcC------
Q 005096 255 WDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ------ 322 (715)
Q Consensus 255 wdl~~~~--~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~sp------ 322 (715)
||+.+++ .+..+..|...|++++|+++ +++|++++.||.|++||++++. ....+..|...|.+++|++
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9998886 67778889999999999999 9999999999999999998773 4456678899999999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCc
Q 005096 323 -------NGNWVLTASKDQIIKLYDIRAM----KELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 323 -------dg~~Lasgs~dg~I~iwDl~t~----~~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
++++|++++.||.|++||++++ ..+..+..|...|++++|++++ +.+|++++.||.|++||+++...
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999877 5677888999999999999943 89999999999999999987642
Q ss_pred e----EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 390 Q----VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 390 ~----~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
. ......|...|++++|++++.+|++++.||.|+||+++..+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 1 122234788999999999999999999999999999985443
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2e-30 Score=273.73 Aligned_cols=300 Identities=15% Similarity=0.172 Sum_probs=222.1
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
..+.+|...+....+.. ...++.+...++.|++|+....... .....
T Consensus 5 ~~~~gH~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------~~~~~ 51 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF-----YGRHVATCSSDQHIKVFKLDKDTSN----------------------------WELSD 51 (351)
T ss_dssp CEECCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEECSSSCC----------------------------EEEEE
T ss_pred ccCcccccceeEEEEcC-----CCCEEEEeeCCCeEEEEECCCCCCc----------------------------ceecc
Confidence 34567777776655543 3346666777899999997643211 01233
Q ss_pred ecCCCCccEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC---------ceEEEEeccCCCEEEEEEcCC--CCEEEEEe
Q 005096 139 SLNKNRCSINRVLWTP--TGRRLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHN--DNWMVSGD 205 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp--dg~~Latgs~dg~I~Iwd~~~~---------~~~~~l~~h~~~V~~l~~spd--g~~L~tgs 205 (715)
.+.+|...|++++|++ |+++|++++.||.|+|||+.++ +.+..+..|...|.+++|+++ +++|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 5678999999999999 6999999999999999999876 567888899999999999999 99999999
Q ss_pred CCCcEEEEeCCCCceeeeec-------------CCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCee--EEEec
Q 005096 206 DGGAIKYWQNNMNNVKANKS-------------AHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQE--ERSLT 267 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~-------------~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~--~~~l~ 267 (715)
.|+.|++||+.+++....+. .+...+.+++|+++ +.+|++++.|+.+.+|+....+. +..+.
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP 211 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC
Confidence 99999999998776443332 57789999999997 89999999999998888877654 66778
Q ss_pred ccCCceEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE----ECCCeEEEE
Q 005096 268 GHGWDVKSVDWHPTK----SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA----SKDQIIKLY 339 (715)
Q Consensus 268 ~~~~~I~si~~spdg----~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg----s~dg~I~iw 339 (715)
+|...|++++|++++ ++|++++.|+.|++||++++............+....++.+...++.+ .....+.+|
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 899999999999998 899999999999999999776555444344444444444444433333 344567777
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 340 DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 340 Dl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
+..+.+.+..+.+|...|++++|++ ++++|++++.||.|+|||+.+......
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 292 SNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp CSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred ccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcchhh
Confidence 7777888999999999999999999 789999999999999999987765443
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.8e-31 Score=287.57 Aligned_cols=230 Identities=14% Similarity=0.189 Sum_probs=174.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcee-----eeecCCCCCeEEEEEec--------CCCEEEEEECCCcEEEEECCCCee
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMNNVK-----ANKSAHKESVRDLSFCR--------TDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~~~~-----~~~~~h~~~I~~l~~sp--------d~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
+++++|++++.|++|+|||+++++.. ..+.+|.+.|++++|++ |+++||+++.|++|+|||+++...
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence 34567999999999999999887543 34678999999999997 788999999999999999998888
Q ss_pred EEEecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEe-------------------------ccCCCceE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSF-------------------------HGHKNMVL 316 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~-------------------------~~~~~~I~ 316 (715)
+..+..|...|.+++|+|++. +|++++.|++|++||+++++..... .+|...+.
T Consensus 179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 888888999999999999874 8999999999999999887643322 24667788
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEE------------------Ecc-CCCCEEEEEeCC
Q 005096 317 CVKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA------------------WHP-FHEEYFVSGSLD 376 (715)
Q Consensus 317 sl~~s-pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~------------------~sp-~~~~~l~sgs~D 376 (715)
++.|+ +|++.|++++.|+.|++||+.+++....+..+...+..+. +++ .++.++++|+.|
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 89987 6999999999999999999998877666655544433332 332 234467788899
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
|.|+|||+.++....... .|...|++++|++||++||+++.|| +.+|++
T Consensus 339 g~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 999999998887765554 5788999999999999999998766 556654
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.9e-29 Score=269.94 Aligned_cols=266 Identities=14% Similarity=0.090 Sum_probs=224.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
.++++++.|+.|++||+++++.+..+..|. .+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788999999999999999998888765 58999999999987 677789999999999998888776555 899999
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCC
Q 005096 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 236 ~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~ 313 (715)
|++++++|++++ .|+.|++||+++++.+..+.. ...+.+++|++++++| ++++.|+.|++||+++++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999886555 679999999999988887774 4578999999999977 67778999999999999988887754 5
Q ss_pred ceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe---CCCcEEEEEcCCCCc
Q 005096 314 MVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETP 389 (715)
Q Consensus 314 ~I~sl~~spdg~~L-asgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs---~DG~I~iwd~~~~~~ 389 (715)
.+.+++|++++++| ++++.++.|++||+++++.+..+. +...+.+++|++ ++++|++++ .++.|++||+++...
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 57999999999988 566788999999999998887776 456899999999 677776666 789999999988765
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEE-EEEECCCeEEEEecCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLL-CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L-~sgs~Dg~I~iWdl~~~ 430 (715)
...+. .+ ..+.+++|++++++| ++++.|+.|++||+...
T Consensus 237 ~~~~~-~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 237 TARIP-VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEE-CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEe-cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 54443 33 468999999999877 66788999999999753
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=8.2e-29 Score=268.84 Aligned_cols=280 Identities=13% Similarity=0.097 Sum_probs=224.7
Q ss_pred ccEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~L-atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg~I~iwd~~~~~~~~ 222 (715)
..+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|++++++|++ ++.++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 348999999999987 566689999999999999988887665 9999999999998854 5567999999999998877
Q ss_pred eecCCCCCeEEEEEecCCCEE-EEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~L-as~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~ 300 (715)
.+.. ...+.+++|++++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|++++++| ++++.|+.|++||++
T Consensus 111 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 7654 4578999999999987 67778999999999999888887754 567999999999877 567788999999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
+++.+..+. +...+.+++|++++++|++++ .++.|++||+++++.+..+..+. .+.+++|++++..++++++.|+
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCC
Confidence 998887776 566799999999999999888 68999999999999988888654 5899999994444557888999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCE------E---------EEEEcCCC----------CEEEEEECCCeEEEEecCCC
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTV------W---------DLAWHPIG----------YLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V------~---------~l~~spdg----------~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++||+.+......+. .+.... . ...|+.+. ..|...+.|..+++|++...
T Consensus 267 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 267 TVSVIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred EEEEEECCCCcEEEEEE-CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 99999998876544433 222221 1 11122111 34566667889999998653
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=266.94 Aligned_cols=282 Identities=17% Similarity=0.293 Sum_probs=222.9
Q ss_pred EEeCCCCceEEEEeccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-Ccee-eeecCCCCCeEEEEEecCCCEEE
Q 005096 170 LWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNNM-NNVK-ANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 170 Iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~tgs~dg~I~iwd~~~-~~~~-~~~~~h~~~I~~l~~spd~~~La 244 (715)
.|+....+.+..+..|.+.|++++|+++ +++|++++.||.|+|||+++ +... ..+..|...|.+++|++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 4456677788889999999999999999 59999999999999999987 4443 67788999999999999999999
Q ss_pred EEECCCcEEEEECCCCeeEEEecccCCceEEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 245 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW--HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~--spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
+++.|+.|++||+++.+.+. +..|...|++++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~- 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI- 179 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE-
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec-
Confidence 99999999999999987766 4569999999999 8999999999999999999999999988887554 56777766
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCC----EEEEEeCCCcEEEEEcCCCC--ceEEEe
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEE----YFVSGSLDGSIFHWLVGHET--PQVEIH 394 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~----~l~sgs~DG~I~iwd~~~~~--~~~~~~ 394 (715)
...+++++.++.+++||++......... .+...+.++++.. +.. .+++++.||.|++||++... .....+
T Consensus 180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 180 -YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp -TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred -CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 4578899999999999998765443322 2345566666655 333 39999999999999998763 223334
Q ss_pred eccCC------------CEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCcc
Q 005096 395 NVHDN------------TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 462 (715)
Q Consensus 395 ~~h~~------------~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 462 (715)
..|.. .|++++|++++++|++++.||.|+|||++...... ...++......+.+..++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK-------TSEQLDQPISACCFNHNGNIF 330 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE-------ECCCCSSCEEEEEECTTSSCE
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE-------EecCCCCCceEEEECCCCCeE
Confidence 44554 69999999999999999999999999997532211 112333444555555555444
Q ss_pred C
Q 005096 463 L 463 (715)
Q Consensus 463 ~ 463 (715)
+
T Consensus 331 ~ 331 (368)
T 3mmy_A 331 A 331 (368)
T ss_dssp E
T ss_pred E
Confidence 3
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-29 Score=276.43 Aligned_cols=246 Identities=16% Similarity=0.141 Sum_probs=211.3
Q ss_pred cCCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQ--SFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~L-atgs~dg~I~Iwd~~--~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...|.+.|++++|++++++| ++++.||.|+|||+. +++.+..+. .|...|++++|++++++|++++.+|.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34688899999999999996 889999999999999 888888876 5678999999999999999999999999999
Q ss_pred CCCCceee----eecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCCCEEE
Q 005096 215 NNMNNVKA----NKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 215 ~~~~~~~~----~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg~~L~ 286 (715)
+.+..... .+..|...|.+++|+++ +++|++++.|++|++||+.+++.+.. +.+|...|.+++|+ ++++|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 98876543 66789999999999999 99999999999999999998887777 55899999999999 999999
Q ss_pred EEeCCCcEEEEECCCCceeEEecc-------------------------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHG-------------------------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYD 340 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~-------------------------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwD 340 (715)
+++.|+.|+|||+++++.+..+.. ....|.+++|++++++|++++ .|+.|+|||
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998887752 235689999999999999999 899999999
Q ss_pred C--CCC---eEEEEeecCCCCeEEEEEccCCCCEEEEEeC------CCcEEEEEcCCCC
Q 005096 341 I--RAM---KELESFRGHRKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHET 388 (715)
Q Consensus 341 l--~t~---~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~------DG~I~iwd~~~~~ 388 (715)
+ .++ +.+..+..+ ..|.+++|++ ++.++++++. +..|.+|.++...
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred eccCCCCceeeccEeccC-CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 9 555 777788877 8899999998 4433333332 4558888775443
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=282.85 Aligned_cols=258 Identities=12% Similarity=0.119 Sum_probs=207.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+++|...|.+++|+|+| .++.+.+|+.+. ...+. .|...|.+++|+|||++||+++.||.|+|||.+.
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~---~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ---NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS---SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCC---ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 347899999999999999 455555555432 22222 4578899999999999999999999999999654
Q ss_pred CceeeeecCCCC-----CeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------eEEEe----cccCCceEEEEEcCC
Q 005096 218 NNVKANKSAHKE-----SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EERSL----TGHGWDVKSVDWHPT 281 (715)
Q Consensus 218 ~~~~~~~~~h~~-----~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-------~~~~l----~~~~~~I~si~~spd 281 (715)
+...+. |.. .|.+++|++|+++||+|+.||+|+|||+.++. .+.++ .+|...|.+++|+||
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 555555 554 59999999999999999999999999998875 35665 567789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRE---LCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~---~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
+ |++++.|+.|++||+.+++. ..++ ..|...|.+++|+ +++||+++ ++.|++||+.+++......+|...|
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE
Confidence 9 88899999999999988773 3456 4788899999999 68899887 6999999999888755444799999
Q ss_pred EEEEE--ccCCCCEEEEEeCCCcEEEEEcCC-----CC-----------------ceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 358 TALAW--HPFHEEYFVSGSLDGSIFHWLVGH-----ET-----------------PQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 358 ~~l~~--sp~~~~~l~sgs~DG~I~iwd~~~-----~~-----------------~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
.+++| ++ ++..|+++++||+ ++|..+. .. ....... +...|++++|+|||++|
T Consensus 269 ~~va~~~s~-d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 269 HIIPLNHEK-ESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSI 345 (588)
T ss_dssp CEEEETTCS-SCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEE
T ss_pred EEEEeeeCC-CCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEE
Confidence 99999 98 7889999999999 9998742 00 0001111 23358999999999999
Q ss_pred EEEE
Q 005096 414 CSGS 417 (715)
Q Consensus 414 ~sgs 417 (715)
|+++
T Consensus 346 A~~~ 349 (588)
T 2j04_A 346 AIVY 349 (588)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-28 Score=266.17 Aligned_cols=250 Identities=10% Similarity=0.094 Sum_probs=193.8
Q ss_pred EEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE-EEEEC
Q 005096 170 LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSD 248 (715)
Q Consensus 170 Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L-as~s~ 248 (715)
||++.+.+.+..+..|...|++++|++|+++|++|+.++ ++||+++..+....... ..+..+++..+++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566677777777788999999999999999999998775 78999988766554432 257888888888877 45677
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEE
Q 005096 249 DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 249 Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
|++|+|||+.+++.+..+. +...|.+++|+++ .++++ .|+.|+|||++++ +.+..+.. ....+++++ +++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 8999999999999988887 6678999999865 34444 4789999999988 66666654 344555665 667
Q ss_pred EE--EECCCeEEEEECCCCe----------------EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-EEEEEcCCCC
Q 005096 328 LT--ASKDQIIKLYDIRAMK----------------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHET 388 (715)
Q Consensus 328 as--gs~dg~I~iwDl~t~~----------------~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~~~~~ 388 (715)
++ ++.||.|+|||+++++ .+..+.+|...|++++|++ ++.+|++++.|++ |+|||+++..
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Confidence 76 5789999999999865 2778899999999999999 8999999999998 9999999888
Q ss_pred ceEEEeec-cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 389 PQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 389 ~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.+..+..+ |...|++++|++++++|++++.|++|+|||++....
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 77666645 899999999999999999999999999999976543
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.5e-29 Score=276.97 Aligned_cols=243 Identities=9% Similarity=0.055 Sum_probs=180.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE-----EEeccCCCEEEEEEcC--------CCCEEEEEeC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSH--------NDNWMVSGDD 206 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~-----~l~~h~~~V~~l~~sp--------dg~~L~tgs~ 206 (715)
...|...+....+++++++|++++.|++|+|||+++++... .+.+|.+.|++|+|++ |+++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666677777788899999999999999998876543 3568999999999997 7899999999
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEE--------------------
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERS-------------------- 265 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~-------------------- 265 (715)
|++|+|||+.++.....+..|...|.+++|+|++ .+|++++.|++|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999888888888899999999999987 4799999999999999987654322
Q ss_pred -----ecccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEE------------------Ec
Q 005096 266 -----LTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK------------------WN 321 (715)
Q Consensus 266 -----l~~~~~~I~si~~s-pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~------------------~s 321 (715)
..+|...|.++.|+ +|++.|++++.|+.|++||+.+++....+..+...+..+. |+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 13566778899986 7999999999999999999998776666554444443333 32
Q ss_pred C--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 322 Q--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 322 p--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+ ++.++++|+.||.|+|||+.+++.+..+..|...|.+++|+| ++++||+++.+| |.+|.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 2 334667788999999999999999988889999999999999 899999999776 445543
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.4e-28 Score=255.31 Aligned_cols=273 Identities=13% Similarity=0.126 Sum_probs=197.0
Q ss_pred EEEEEEcCCCC---EEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcE-EEEeC--C
Q 005096 147 INRVLWTPTGR---RLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAI-KYWQN--N 216 (715)
Q Consensus 147 I~~l~~spdg~---~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I-~iwd~--~ 216 (715)
+.++-|-..+- .|+++++. .|++|+..+. +++.++..|+..|..|.+.+|.. ++.++-.+=.+ .|+.+ .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666655443 56677765 6999998887 89999999999999999999753 33332221111 12211 1
Q ss_pred CC----ceeeeecCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEEC-CCCeeEEEecccCCceEEEEEcC---CCCEEE
Q 005096 217 MN----NVKANKSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVWDF-ARCQEERSLTGHGWDVKSVDWHP---TKSLLV 286 (715)
Q Consensus 217 ~~----~~~~~~~~h~~~I~~l~~spd~~~Las~s--~Dg~V~iwdl-~~~~~~~~l~~~~~~I~si~~sp---dg~~L~ 286 (715)
.. .......++...|..+ ++++.+.++. .|+.|++|++ .+++.+..+..|...++.++|++ ++.+|+
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 11 1111112333334433 3555444433 4999999999 55888888889999999999999 779999
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCC---CceEEEEEcCCCCEE------------EEEECCCeEEEEECCCCeEEEEe-
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWV------------LTASKDQIIKLYDIRAMKELESF- 350 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~~~---~~I~sl~~spdg~~L------------asgs~dg~I~iwDl~t~~~~~~~- 350 (715)
+++.|++|+|||+++++++.++.+|. ..+.+++|+++++++ ++|+.|++|++||.++++.+..+
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~ 277 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML 277 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence 99999999999999999999997643 367888999999876 56778999999999999988765
Q ss_pred ----ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE-EEEEcCCCCEEEEEECCCeEEEE
Q 005096 351 ----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 351 ----~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.+|...+.+..+ ++.++++++.|++|+|||+.+++.+..+ .+|...+. +++|+|||++|++|+.|++|+||
T Consensus 278 ~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 278 YCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp ECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred eeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 355555554444 3778999999999999999988766554 45766554 68999999999999999999999
Q ss_pred ec
Q 005096 426 CR 427 (715)
Q Consensus 426 dl 427 (715)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 86
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-29 Score=265.95 Aligned_cols=232 Identities=7% Similarity=0.052 Sum_probs=191.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---------CCeeEE
Q 005096 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---------RCQEER 264 (715)
Q Consensus 194 ~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---------~~~~~~ 264 (715)
+..++++|++|+.||.|++||+++++.+..+. ...|.++.|+++ +++++.|++|++|+.. +.+.+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 44577899999999999999999988777665 567778888877 9999999999999765 444344
Q ss_pred Eec-ccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 265 SLT-GHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 265 ~l~-~~~~~I~si~~sp--dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
.+. .|...|.+++|++ ++++|++++.|+.|++||+++++.+..+. .+...|++++|++++++|++|+.|+.|+|||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 433 5667899999999 99999999999999999999998877664 3455799999999999999999999999999
Q ss_pred CCCCeEE-EEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe--eccCCCE--EEEEEcCCCCEEE
Q 005096 341 IRAMKEL-ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTV--WDLAWHPIGYLLC 414 (715)
Q Consensus 341 l~t~~~~-~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V--~~l~~spdg~~L~ 414 (715)
+++++.+ ..+.. |...|++++|++ ++.+|++++ |+.|++||+++......+. ..|...+ .+++|++++++|+
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 9999988 88888 999999999999 889999999 4599999998876543221 1122333 4699999999999
Q ss_pred EEEC-CCeEEEEecCCCCC
Q 005096 415 SGSN-DHTTKFWCRNRPGD 432 (715)
Q Consensus 415 sgs~-Dg~I~iWdl~~~~~ 432 (715)
+++. |+.|+||+++...+
T Consensus 277 ~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEETTTTEEEEEEECTTTC
T ss_pred EecCCCCcEEEEEEccccc
Confidence 9998 99999999976544
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.9e-27 Score=259.21 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=228.2
Q ss_pred CCccEEEEE---EcCCCCEEEEEeC--------------CC--eEEEEeCCCC--ceEEEEeccCCCEEEEEEcCCCCEE
Q 005096 143 NRCSINRVL---WTPTGRRLITGSQ--------------SG--EFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWM 201 (715)
Q Consensus 143 H~~~I~~l~---~spdg~~Latgs~--------------dg--~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L 201 (715)
....+..++ |+++++.+++.+. ++ .|.+||.+++ +.+..+..+ ..+.+++|++++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345567777 7777776665432 23 4444555434 455555544 446699999977778
Q ss_pred EEEeCCCcEEEEeCCCCceee-----eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 202 VSGDDGGAIKYWQNNMNNVKA-----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
++++.++.|++||+.+++... .+..|...|.+++|+++++++++++.|+.|++||+++++.+..+..+...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 888889999999999988776 445788899999999999999999999999999999999999888889999999
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--------CCCeEEEEECCCCeEE
Q 005096 277 DWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--------KDQIIKLYDIRAMKEL 347 (715)
Q Consensus 277 ~~spdg~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--------~dg~I~iwDl~t~~~~ 347 (715)
+|++++++|++++ .|+.|++||+++++.+..+.. ...+.+++|++++++|++++ .|+.|++||+++++.+
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 9999999885554 799999999999988887774 45699999999999999888 4889999999999887
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC---------
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN--------- 418 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~--------- 418 (715)
..+. +...+.+++|++++..++++++.|+.|++||+++.+....+ .+...+.+++|++++++|++++.
T Consensus 297 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 297 DTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp EEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred eecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence 7663 45588999999954457788899999999999876654433 26778999999999998888887
Q ss_pred ------CCeEEEEecCC
Q 005096 419 ------DHTTKFWCRNR 429 (715)
Q Consensus 419 ------Dg~I~iWdl~~ 429 (715)
||.|++||+..
T Consensus 374 ~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TSCCSSCCEEEEEETTT
T ss_pred ccccccceEEEEEECCC
Confidence 57999999865
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.1e-26 Score=244.75 Aligned_cols=217 Identities=11% Similarity=0.093 Sum_probs=167.3
Q ss_pred CCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEe
Q 005096 141 NKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD--DGGAIKYWQ 214 (715)
Q Consensus 141 ~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs--~dg~I~iwd 214 (715)
+-|...|++|+|++| +.++++++.+ ++||++. +++++.++. .|+.|++|+
T Consensus 108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~V~~~~ 163 (356)
T 2w18_A 108 NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQVEVMT 163 (356)
T ss_dssp SSSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCEEEEEE
T ss_pred cccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCcEEEEE
Confidence 345566777777777 6777776633 5666432 344444433 477888888
Q ss_pred C-CCCceeeeecCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCCeeEEEecccC---CceEEEEEcCCCCEE--
Q 005096 215 N-NMNNVKANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLL-- 285 (715)
Q Consensus 215 ~-~~~~~~~~~~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~---~~I~si~~spdg~~L-- 285 (715)
+ .+++.+..+..|...++.++|++ ++.+|++++.|++|+|||+++++.++++.+|. ..+.+++|+|+++++
T Consensus 164 ~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs 243 (356)
T 2w18_A 164 FAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIV 243 (356)
T ss_dssp ECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred ECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence 7 34666677778899999999999 77999999999999999999999999998654 367788999999876
Q ss_pred ----------EEEeCCCcEEEEECCCCceeEEe-----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 286 ----------VSGGKDSLVKLWDAKSGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 286 ----------~sgs~Dg~I~iwDl~s~~~~~~~-----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++|+.|++|++||.++++.+..+ .+|...+.+..++ +.++++++.|++|+|||+++++++.++
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 56788999999999999887665 3565555555554 889999999999999999999999999
Q ss_pred ecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 351 RGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 351 ~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.+|...+. +++|+| ++++|++|+.|++|+|||+
T Consensus 322 ~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 PPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 99887655 689999 8999999999999999996
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.9e-26 Score=257.54 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=228.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceEEEEeccCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCc
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSH----NDNWMVSGDD-GGAIKYWQNNMNN 219 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~--~~~~~~~~l~~h~~~V~~l~~sp----dg~~L~tgs~-dg~I~iwd~~~~~ 219 (715)
+.+++|++||++|++++.|++|++||+ .+++.+..+. +...+..++|++ |+++|++++. +++|.|||..+.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999999999999999999999999 8888888887 456689999999 9999988874 8999999999998
Q ss_pred eeeeecCC-----------CCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEE--EecccCCceEEEEEcCCCCEE
Q 005096 220 VKANKSAH-----------KESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 220 ~~~~~~~h-----------~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~--~l~~~~~~I~si~~spdg~~L 285 (715)
++..+..+ ...+.++.+++++.. +++...++.|.+||+.+.+.+. .+. +...+.+++|++++++|
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence 87776542 237899999997765 5566678999999998765433 333 56678899999999977
Q ss_pred EEEe-CCCcEEEEECCCCceeEEecc----CCCceEEEEEcCC-CCEEEEEE-CCCeEEEEECCC-------CeEEEEee
Q 005096 286 VSGG-KDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQN-GNWVLTAS-KDQIIKLYDIRA-------MKELESFR 351 (715)
Q Consensus 286 ~sgs-~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spd-g~~Lasgs-~dg~I~iwDl~t-------~~~~~~~~ 351 (715)
++++ .+++|.+||+++++++..+.. |......+ ++++ +.+++++. .|++|.|||+.+ ++++.++.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 6655 588999999999998887764 44334343 4676 55566665 579999999998 89999999
Q ss_pred cCCCCeEEEEEccCCCCEEEEEe-------CCCcEEEEEcCCCCceEEEe--------eccCCCEEEEEEcCCCCEEEEE
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGS-------LDGSIFHWLVGHETPQVEIH--------NVHDNTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs-------~DG~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~L~sg 416 (715)
.+...+..|+++| ++++|++++ .+++|.|||+.+.+...+.+ ..+...+..++|+++|+.|+++
T Consensus 418 ~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 418 GQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred cCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 9999999999999 788888876 26799999999888764443 2356789999999999988876
Q ss_pred E-----CCCeEEEEecCCCC
Q 005096 417 S-----NDHTTKFWCRNRPG 431 (715)
Q Consensus 417 s-----~Dg~I~iWdl~~~~ 431 (715)
. .|+.|.|||.++.+
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EECCTTSCCEEEEEETTTTE
T ss_pred eecCCCCCCeEEEEECCCce
Confidence 3 37999999986643
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=4.7e-26 Score=268.97 Aligned_cols=284 Identities=9% Similarity=0.045 Sum_probs=227.4
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CC-----eEEEEeCCCCceEEEEeccCCC------------------------EEEEE
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-SG-----EFTLWNGQSFNFEMILQAHDHA------------------------IRSMV 193 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-dg-----~I~Iwd~~~~~~~~~l~~h~~~------------------------V~~l~ 193 (715)
...|++++||+||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 8999999999888777665433 78999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC
Q 005096 194 WSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (715)
Q Consensus 194 ~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~ 271 (715)
|++|+++|++++. +.|++||+.++. ....+..+...+.+++|++|+++|++++. +.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence 9999999998886 999999999873 34456677788999999999999999885 5899999998876655443333
Q ss_pred c----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q 005096 272 D----------------VKSVDWHPTKSLLVSGGKDS---------------------------------LVKLWDAKS- 301 (715)
Q Consensus 272 ~----------------I~si~~spdg~~L~sgs~Dg---------------------------------~I~iwDl~s- 301 (715)
. +.+++|+|||++|++++.|+ .|++||+++
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999987765 789999998
Q ss_pred CceeEEec--cCCCceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecCCC----CeEEEEEccCCCCEE
Q 005096 302 GRELCSFH--GHKNMVLCVKWNQNGNWVLTASK-----DQIIKLYDIRAMKELESFRGHRK----DVTALAWHPFHEEYF 370 (715)
Q Consensus 302 ~~~~~~~~--~~~~~I~sl~~spdg~~Lasgs~-----dg~I~iwDl~t~~~~~~~~~h~~----~V~~l~~sp~~~~~l 370 (715)
++...... .+...+.+++| +||++|++++. +..|++||+.+++....+..+.. .+.+++|++ +++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~ 351 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-DGSIL 351 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-TSCEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-CCeEE
Confidence 77655443 36778999999 99999997764 56899999999988777765543 456899999 56699
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEE-EEcCCCCEEEEE-ECCC--eEEEEecCCCCC
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCSG-SNDH--TTKFWCRNRPGD 432 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L~sg-s~Dg--~I~iWdl~~~~~ 432 (715)
++++.||.+.||.++.... ...+..+...|.++ .|++|++.|+.. +.|+ .++||+++..+.
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 9999999888888764444 55566677788887 599999877554 4455 899999876443
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.1e-26 Score=250.27 Aligned_cols=247 Identities=14% Similarity=0.094 Sum_probs=199.4
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeeecC
Q 005096 156 GRRLITGSQS------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 156 g~~Latgs~d------g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg---~I~iwd~~~~~~~~~~~~ 226 (715)
+..|++++.+ ++|++||++. .....+..|...|.+++|++|+++|++++.++ .|++||+.+++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5566666554 7999999975 45677788999999999999999999998875 9999999988765 4566
Q ss_pred CCCCeEEEEEecCCCEEE-EEECCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECC
Q 005096 227 HKESVRDLSFCRTDLKFC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAK 300 (715)
Q Consensus 227 h~~~I~~l~~spd~~~La-s~s~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~ 300 (715)
+...+.+++|++|+++|+ +++.|+. |++||+++++. ..+..+...+.+++|+||+++|++++. ++ .|++||++
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 788999999999999888 5665554 99999988765 566778888999999999999888876 44 68888998
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
+++. ..+..+...+.+++|++||++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~ 375 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQG 375 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEET
T ss_pred CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCC
Confidence 7764 4455567789999999999999988764 58999999988764 455454 899999999 778777777666
Q ss_pred ---cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 378 ---SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 378 ---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
.|++||+... ....+..|.+.|.+++|+|...
T Consensus 376 ~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 376 MGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred CccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence 7999998643 3355667889999999998753
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=3.1e-26 Score=252.69 Aligned_cols=277 Identities=9% Similarity=0.044 Sum_probs=219.0
Q ss_pred CccEEEEEEcCCCC-EEEEEe----CCC----eEEEEeC--CCCceE--EEEeccCCCEEEEEEcC--------------
Q 005096 144 RCSINRVLWTPTGR-RLITGS----QSG----EFTLWNG--QSFNFE--MILQAHDHAIRSMVWSH-------------- 196 (715)
Q Consensus 144 ~~~I~~l~~spdg~-~Latgs----~dg----~I~Iwd~--~~~~~~--~~l~~h~~~V~~l~~sp-------------- 196 (715)
...|+..+|+..|. +|++|+ .|| +|+|||+ .+++.+ ..+.+|...+..++++.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888888775 555775 467 8999999 888876 55888888887777664
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeeEEEec
Q 005096 197 NDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLT 267 (715)
Q Consensus 197 dg~~L~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg---~V~iwdl~~~~~~~~l~ 267 (715)
.+..|+.++.+ +.|++||++.. ....+..|...|.+++|++|+++|++++.++ .|++||+++++.. .+.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 15566655543 79999999854 4556667889999999999999999999885 9999999988765 456
Q ss_pred ccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-C--eEEEEEC
Q 005096 268 GHGWDVKSVDWHPTKSLLV-SGGKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDI 341 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~-sgs~Dg~--I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-g--~I~iwDl 341 (715)
.+...+.+++|+||+++|+ +++.|+. |++||+++++. ..+..+...+.+++|++|+++|++++.+ + .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 6778899999999999887 5665554 99999998765 5667788899999999999999988864 4 6888899
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.+++. ..+..+...+.+++|++ ++++|++++.+ ..|++||+.++.. ..+..+. .+.+++|++||++|++++.
T Consensus 299 ~~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSCC-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCCE-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 87763 44556777899999999 67777766653 5899999987654 2333343 8999999999999999888
Q ss_pred CC---eEEEEecC
Q 005096 419 DH---TTKFWCRN 428 (715)
Q Consensus 419 Dg---~I~iWdl~ 428 (715)
|+ .|++||++
T Consensus 374 ~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 374 QGMGSVLNLVSTD 386 (415)
T ss_dssp ETTEEEEEEEETT
T ss_pred CCCccEEEEEECC
Confidence 77 78999875
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.9e-25 Score=252.20 Aligned_cols=279 Identities=12% Similarity=0.055 Sum_probs=228.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCceeeeecCCC
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN--NMNNVKANKSAHK 228 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~--~~~~~~~~~~~h~ 228 (715)
+|++++.++++++.|++|.+||..+++++.++..+.. +.+++|++|+++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889999999999999999999999999999884443 899999999999999999999999999 7888777776 45
Q ss_pred CCeEEEEEec----CCCEEEEEEC-CCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCC-EEEEEeCC
Q 005096 229 ESVRDLSFCR----TDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKS-LLVSGGKD 291 (715)
Q Consensus 229 ~~I~~l~~sp----d~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~-~L~sgs~D 291 (715)
..+..++|++ |+++|++++. +++|.|||..+.+.+..+..+ ...+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6689999999 9999998885 899999999999888877642 23688999999876 45566778
Q ss_pred CcEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec----CCCCeEEEEEcc
Q 005096 292 SLVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG----HRKDVTALAWHP 364 (715)
Q Consensus 292 g~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp 364 (715)
+.|.+||+.+.+.+. .+. +...+.++.|++++++|++++ .+++|.+||+++++++..+.. |......+ +++
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 999999998876544 343 556788999999999887665 588999999999999988874 44433333 467
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCC------CceEEEeeccCCCEEEEEEcCCCCEEEEEE-------CCCeEEEEecCCC
Q 005096 365 FHEEYFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCSGS-------NDHTTKFWCRNRP 430 (715)
Q Consensus 365 ~~~~~l~sgs-~DG~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs-------~Dg~I~iWdl~~~ 430 (715)
+++.+++++. .|++|.|||+++. ..++..+..|...+..+++++|+++|++++ .+++|.|||++..
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 5577778776 6899999999872 345566667878889999999999999987 3789999999876
Q ss_pred CCc
Q 005096 431 GDT 433 (715)
Q Consensus 431 ~~~ 433 (715)
...
T Consensus 460 ~~~ 462 (543)
T 1nir_A 460 DAK 462 (543)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.4e-24 Score=228.33 Aligned_cols=272 Identities=10% Similarity=0.067 Sum_probs=221.3
Q ss_pred CccEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQN 215 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~ 215 (715)
...+..++|++++++|++++. ++.|.+||..+++.+..+.. ...+..++|++++++|+ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 56899999999998888765 34578899999999665 4555799999999
Q ss_pred CCCceeeeecCCCCC---------eEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCE
Q 005096 216 NMNNVKANKSAHKES---------VRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~---------I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
.+++.+..+..+... +.+++|+++++++++++ .++.|.+||+++++.+..+..+...+.+++|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 999887776554322 78899999999888776 4788999999999998888766667899999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~d-g~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
|++++.++.|.+||+++++.+..+.. +...+.+++|++++++|++++.+ +.|.+||+.+++.+..+.... ...
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cce
Confidence 99999999999999999988877653 45568899999999988877654 899999999999888887544 367
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
++|++++..++++...++.|.+||..+.+....+.. ...+.+++|++|+++|+++..++
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence 999994444556666799999999988765544432 44789999999999877776654
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=6.5e-24 Score=224.68 Aligned_cols=276 Identities=9% Similarity=0.098 Sum_probs=205.9
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCce-eeeecC
Q 005096 150 VLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNV-KANKSA 226 (715)
Q Consensus 150 l~~spdg~~-Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~~~~-~~~~~~ 226 (715)
..|..++++ +++++.++.|++||.++++.+..+..+...+ +++|++++++|++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345555555 6677788999999999999988888777777 9999999997766655 89999999999887 666666
Q ss_pred CCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCc-EEEEECCC
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL-VKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg---~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~-I~iwDl~s 301 (715)
+...+.+++|++++++|+++..++ .|++||+++++.+..+.. .....+++|++|+++|+++ ..++. |.+||++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666665599999999999555553 899999999988887764 4467899999999855544 55688 99999986
Q ss_pred CceeE----EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE---EEEeecCCCCeEEEEEccCCCCEE-EE
Q 005096 302 GRELC----SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYF-VS 372 (715)
Q Consensus 302 ~~~~~----~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~---~~~~~~h~~~V~~l~~sp~~~~~l-~s 372 (715)
...+. ..........+++|++|+++|++++ .++.|++||+++++. +..+.. ...+..++|++ ++++| ++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEE
Confidence 44332 1123345689999999999776655 688999999998887 777664 46778999999 66655 44
Q ss_pred EeCCCcEEEEEcCCCCce--EEEeec---cC---CCEEEEEEcCCCCEEEEEEC-CCeEEEEecCC
Q 005096 373 GSLDGSIFHWLVGHETPQ--VEIHNV---HD---NTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNR 429 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~--~~~~~~---h~---~~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~ 429 (715)
...++.|.+||..+++.. ..+... +. ..+..++|++|+++|++++. ++.|.+||++.
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 456788999999876541 111111 11 12356899999998866655 66999999965
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.4e-25 Score=261.95 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=213.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDDG---------GAIKYW 213 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~tgs~d---------g~I~iw 213 (715)
.+.+++|++||++|++ +.||+|++||+.+++....+..|.. .|.+++|++||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999998888887765 49999999999999998764 778899
Q ss_pred eCCCCceeee--ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce------------------
Q 005096 214 QNNMNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV------------------ 273 (715)
Q Consensus 214 d~~~~~~~~~--~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I------------------ 273 (715)
|+++++.... ...+...+..++|+||++.|++++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9998875222 2234445889999999999999886 789999998887766555433333
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEeccC------CC
Q 005096 274 KSVDWHPTKSLLVSGGKDS----------------------------------LVKLWDAKSGRELCSFHGH------KN 313 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg----------------------------------~I~iwDl~s~~~~~~~~~~------~~ 313 (715)
.+++|+|||++|++++.|+ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999887553 7999999988866666543 56
Q ss_pred ceEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeEEEEeecC-CCCe----EEEEEccCCCCEEEE-EeCCC------
Q 005096 314 MVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKELESFRGH-RKDV----TALAWHPFHEEYFVS-GSLDG------ 377 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~----dg~I~iwDl~t~~~~~~~~~h-~~~V----~~l~~sp~~~~~l~s-gs~DG------ 377 (715)
.+.+++|++||++|++.+. +..|++||+.+++....+..+ ...+ ..++|+|++..++++ +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 7899999999998877653 357999999998877665433 3333 378999955555554 56777
Q ss_pred cEEEEEcCCCCc---eEEEeeccCCCEEE-EEEcCCCCEEEEEECC---CeEEEEecCCCC
Q 005096 378 SIFHWLVGHETP---QVEIHNVHDNTVWD-LAWHPIGYLLCSGSND---HTTKFWCRNRPG 431 (715)
Q Consensus 378 ~I~iwd~~~~~~---~~~~~~~h~~~V~~-l~~spdg~~L~sgs~D---g~I~iWdl~~~~ 431 (715)
.|++||+..... ...+. .+...+.. ++|++|++.|+..+.+ +.++||+++..+
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred EEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 466666323322 22222 23344554 6999999999877665 789999997654
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=9.8e-25 Score=256.32 Aligned_cols=280 Identities=11% Similarity=0.097 Sum_probs=213.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----C
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-----N 218 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-----~ 218 (715)
...|.+++||+| ++|+++. ++.|++||+.+++... +..+...+.+++|++||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 457999999999 6666664 5899999999876554 44567778999999999999885 679999999998 7
Q ss_pred ceeeeecCCCCC--------------eEEEEEecCCCEEEEEE---------------------------------CCCc
Q 005096 219 NVKANKSAHKES--------------VRDLSFCRTDLKFCSCS---------------------------------DDTT 251 (715)
Q Consensus 219 ~~~~~~~~h~~~--------------I~~l~~spd~~~Las~s---------------------------------~Dg~ 251 (715)
+.......+... +.+++|++|+++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 666544444433 48999999999999987 4467
Q ss_pred EEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEec--cCCC---ceEEEE
Q 005096 252 VKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFH--GHKN---MVLCVK 319 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg-----~I~iwDl~s~~~~~~~~--~~~~---~I~sl~ 319 (715)
|++||+.+++...... .+...+.+++|++|+++|++++.|+ .|++||+++++.+..+. .+.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887654442 4567799999999999999887775 89999999984443332 1222 246789
Q ss_pred EcC--CCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCC----cEEEEEcCCCCceE
Q 005096 320 WNQ--NGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG----SIFHWLVGHETPQV 391 (715)
Q Consensus 320 ~sp--dg~~Lasgs~dg~I~iwDl~-t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG----~I~iwd~~~~~~~~ 391 (715)
|++ |+++|++++.|+.++||+++ +++.+..+..+...+.+ ++|++++..++++++.++ .|+.||+.++. .
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~ 394 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--T 394 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--C
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--c
Confidence 999 99999999999999999886 67778888888888877 799994444555555555 56666766544 2
Q ss_pred EEeeccCCCEEEEEEcCCCCEEEEEECC----CeEEEEecCCC
Q 005096 392 EIHNVHDNTVWDLAWHPIGYLLCSGSND----HTTKFWCRNRP 430 (715)
Q Consensus 392 ~~~~~h~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~~~ 430 (715)
..+. +...+.+++|++|+++|+..+.+ +.|++||++..
T Consensus 395 ~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 395 KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 3332 56789999999999988876544 56999998653
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=6.4e-25 Score=259.25 Aligned_cols=279 Identities=11% Similarity=0.070 Sum_probs=217.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
..|.+++|||||++|++++. +.|++||+.+++ ....+..+...+.+++|++||++|++++. +.|++||+.+++...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 45889999999999999987 899999999873 44556778889999999999999998874 689999999887665
Q ss_pred eecCCCCC----------------eEEEEEecCCCEEEEEECCC---------------------------------cEE
Q 005096 223 NKSAHKES----------------VRDLSFCRTDLKFCSCSDDT---------------------------------TVK 253 (715)
Q Consensus 223 ~~~~h~~~----------------I~~l~~spd~~~Las~s~Dg---------------------------------~V~ 253 (715)
....+... +.+++|++|+++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55444332 47899999999999988765 789
Q ss_pred EEECCC-CeeEEEec--ccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEeccCCC----ceEEEEEc
Q 005096 254 VWDFAR-CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGRELCSFHGHKN----MVLCVKWN 321 (715)
Q Consensus 254 iwdl~~-~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~-----Dg~I~iwDl~s~~~~~~~~~~~~----~I~sl~~s 321 (715)
+||+.+ ++...... .+...+.+++| +|+++|++++. +..|++||+++++....+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 76554433 36678999999 99999887764 56799999999987776654432 35689999
Q ss_pred CCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCeEEE-EEccCCCCEEEEEeCCC--cEEEEEcCCCCceEEEeecc
Q 005096 322 QNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVH 397 (715)
Q Consensus 322 pdg~~Lasgs~dg~I~iwDl~-t~~~~~~~~~h~~~V~~l-~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~~~~~~~~h 397 (715)
+||++|++++.|+.++||.+. +++ +..+..+...|..+ .|++++..++++++.++ .++||+++........+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 999988899999988888765 345 77788888888887 59994444555666666 8999998754333334433
Q ss_pred CCCEEEEEEcCCCCEEEEEECC----CeEEEEecC
Q 005096 398 DNTVWDLAWHPIGYLLCSGSND----HTTKFWCRN 428 (715)
Q Consensus 398 ~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~ 428 (715)
...+.+++|++|+++|+....+ ..+.+|+.+
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 5678999999999988776544 467888764
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=3.4e-24 Score=226.85 Aligned_cols=269 Identities=10% Similarity=0.088 Sum_probs=193.8
Q ss_pred EEEEeCCCeEEEEeCC-CCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCce--eeeecCCCCCe
Q 005096 159 LITGSQSGEFTLWNGQ-SFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNN--MNNV--KANKSAHKESV 231 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~-~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g~I~iwd~~--~~~~--~~~~~~h~~~I 231 (715)
+++++.|+.|++||++ +++. ......+...+.+++|++++++|++++.+ +.|.+|+++ +++. +..+..+ ..+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCC
Confidence 4444779999999985 3322 22223467789999999999999888876 999999987 4443 3333333 388
Q ss_pred EEEEEecCCCEEEEEEC-CCcEEEEECC---CCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ccee
Q 005096 232 RDLSFCRTDLKFCSCSD-DTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GREL 305 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~-Dg~V~iwdl~---~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s-~~~~ 305 (715)
.+++|++++++|++++. ++.|++||+. ..+.+..+. ....+.+++|++++++|++++ .++.|++||+++ ++..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 99999999998877765 8889999994 334444444 334689999999999888877 889999999987 5443
Q ss_pred E----Eec-cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCC--CeE--EEEeec---C---CCCeEEEEEccCCCCE
Q 005096 306 C----SFH-GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA--MKE--LESFRG---H---RKDVTALAWHPFHEEY 369 (715)
Q Consensus 306 ~----~~~-~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t--~~~--~~~~~~---h---~~~V~~l~~sp~~~~~ 369 (715)
. .+. .....+.+++|++++++|++++ .++.|++||++. ++. +..+.. . ...+.+++|++ ++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~ 244 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH 244 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCE
Confidence 2 222 2345788999999999877665 789999999953 332 223321 1 23577899999 5555
Q ss_pred E-EEEeCCCcEEEEEcCCC--C-ceEEEeeccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 370 F-VSGSLDGSIFHWLVGHE--T-PQVEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 370 l-~sgs~DG~I~iwd~~~~--~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
| +++..++.|.+||++.. . ........+. .+.+++|++++++|++++ .|+.|.+|+++...
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 4 46668999999999842 2 2222232233 488999999999888887 68999999886543
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.9e-24 Score=221.35 Aligned_cols=254 Identities=10% Similarity=0.103 Sum_probs=199.0
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeeecCC-CCCeEEEEEecC
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAH-KESVRDLSFCRT 239 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-~~~~~~~~~h-~~~I~~l~~spd 239 (715)
++.|++|++||+.+++.. .+..|...|.+++|++++++|++++ ++.|++||+++ ++.......+ ...|.+++|+++
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 456889999999988766 4556889999999999999999886 78999999998 7776666555 367899999999
Q ss_pred CCEEEEEEC--CCcEEEE--ECCCCeeEEEecccCCceEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CceeEEeccCCC
Q 005096 240 DLKFCSCSD--DTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSLVKLWDAKS-GRELCSFHGHKN 313 (715)
Q Consensus 240 ~~~Las~s~--Dg~V~iw--dl~~~~~~~~l~~~~~~I~si~~spdg~~L~-sgs~Dg~I~iwDl~s-~~~~~~~~~~~~ 313 (715)
+++|++++. ++.+.|| |+.+++ ...+..+ ..+.+++|++++++|+ ++..|+.++||+++. +.....+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 999999983 3445554 555544 3444433 3488999999999777 677899999998642 334556666788
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC-----------CcEE
Q 005096 314 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-----------GSIF 380 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs-~dg~I~iwDl~-t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-----------G~I~ 380 (715)
.+.+++|++++++|++++ .++.++||+++ .+..+..+..+...+.+++|++ ++++|++++.+ +.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence 899999999999888776 58899999986 5666777877888899999999 77777777655 5699
Q ss_pred EEEcCCCCceEE-EeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 381 HWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 381 iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+||+.+...... ....|...|.+++|++++++|++++.|.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999987654322 2335778899999999999998887664
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=2.5e-23 Score=219.64 Aligned_cols=266 Identities=6% Similarity=0.007 Sum_probs=209.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCC--CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCC-----C
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH--AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH-----K 228 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h-----~ 228 (715)
++|++++.++.|++||..+++.+..+..... .+.+++|++++++|+ ++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887764332 578999999998764 5566789999999998877655432 2
Q ss_pred CCeEEEEEecCCCEEEEEE------------CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 229 ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s------------~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
..+.+++|++++++|++++ .++.|++||+.+++.+..+.. ...+.+++|++++++|+++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2678899999999998886 579999999999888777764 4568899999999988887 688999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC------------------------eEEEEECCCCeEE-EEee
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------------------------IIKLYDIRAMKEL-ESFR 351 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg------------------------~I~iwDl~t~~~~-~~~~ 351 (715)
||+++++.+..+..... ...+.|++++++|++.+.++ .|.+||+++++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 99999988877764331 11337889888766554332 4789999988764 3344
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.+...+.+++|++ ++++|+++ ++.|++||+.+.+....+. ....+.+++|++|+++|++++.|+.|++||++...
T Consensus 238 ~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 5667788999999 77777777 6899999998776554443 23568899999999999999999999999997644
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=5.9e-23 Score=217.27 Aligned_cols=263 Identities=8% Similarity=0.099 Sum_probs=187.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCce--EEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQ--SFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNN 216 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~d-g~I~Iwd~~--~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~ 216 (715)
|...+.+++|++++++|++++.+ +.|++|+++ +++. +..+..+. .+.+++|++++++|++++. ++.|.+||++
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 55678899999999999998887 999999987 4443 34444433 7889999999998876654 7899999994
Q ss_pred ---CCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC-CeeEE----Eec-ccCCceEEEEEcCCCCEEE
Q 005096 217 ---MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-CQEER----SLT-GHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 217 ---~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~-~~~~~----~l~-~~~~~I~si~~spdg~~L~ 286 (715)
..+....+. ....+.+++|++++++|++++ .++.|++||+.+ ++... .+. .....+.+++|++++++|+
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 115 DGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp TTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 333444433 344689999999999888887 899999999987 54432 222 2345788999999999776
Q ss_pred EEe-CCCcEEEEECCC--Cce--eEEecc------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECC----CCeEEEEe
Q 005096 287 SGG-KDSLVKLWDAKS--GRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR----AMKELESF 350 (715)
Q Consensus 287 sgs-~Dg~I~iwDl~s--~~~--~~~~~~------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~----t~~~~~~~ 350 (715)
+++ .++.|++||++. ++. +..+.. ....+.+++|++++++|+++. .++.|++||++ +.+.+..+
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 555 789999999953 432 222221 123577899999999888655 78999999998 34555556
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCce---EEEeeccCCCEEEEEEcCCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg 410 (715)
..+.. +.+++|++ ++++|++++ .++.|.+|+++..... ..... ......+++|.++.
T Consensus 274 ~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 274 PTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA-VGQGPMWVVVNAHE 334 (343)
T ss_dssp ECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE-CSSSCCEEEEEEEC
T ss_pred cCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEccccc-cCCCCeeEEEEccc
Confidence 55544 89999999 667666666 6899999976533211 11121 12345566666543
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=7.8e-24 Score=249.04 Aligned_cols=270 Identities=12% Similarity=0.081 Sum_probs=197.7
Q ss_pred cEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 146 SINRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~d---------g~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
.|.+++|||||++|++++.+ +.|+|||+.+++. ..+. .|...+.+++|+|||++|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48999999999999999874 7888999998876 3333 34445889999999999998876 799999
Q ss_pred eCCCCceeeeecCCCCCe------------------EEEEEecCCCEEEEEECCC-------------------------
Q 005096 214 QNNMNNVKANKSAHKESV------------------RDLSFCRTDLKFCSCSDDT------------------------- 250 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I------------------~~l~~spd~~~Las~s~Dg------------------------- 250 (715)
|+.+++.......+...+ .+++|++|+++|++++.|+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999887766555444333 7899999999999887553
Q ss_pred ---------cEEEEECCCCeeEEEeccc------CCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEecc-
Q 005096 251 ---------TVKVWDFARCQEERSLTGH------GWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHG- 310 (715)
Q Consensus 251 ---------~V~iwdl~~~~~~~~l~~~------~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~~~~~~~- 310 (715)
.|++||+.+++....+..+ ...+.+++|+|||++|++.+. +..|++||+.++++...+..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 7999999888765555543 567899999999998877653 35799999999887666543
Q ss_pred CCCce----EEEEEcCCCCEEEE--EECCC------eEEEEE-CCCCe--EEEEeecCCCCeEE-EEEccCCCCEEEEEe
Q 005096 311 HKNMV----LCVKWNQNGNWVLT--ASKDQ------IIKLYD-IRAMK--ELESFRGHRKDVTA-LAWHPFHEEYFVSGS 374 (715)
Q Consensus 311 ~~~~I----~sl~~spdg~~Las--gs~dg------~I~iwD-l~t~~--~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs 374 (715)
+...+ .+++|++||++|++ +..++ .|++|| ..+++ ++..+......+.. ++|++ +++.|+..+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~ 378 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLS 378 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEE
Confidence 33433 37899999997775 44666 577777 34443 14555544445554 69999 566665544
Q ss_pred -CC--CcEEEEEcCCCCc-eEEEeec---cCCCEEEEEEcCCCCEEEEEEC
Q 005096 375 -LD--GSIFHWLVGHETP-QVEIHNV---HDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 375 -~D--G~I~iwd~~~~~~-~~~~~~~---h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.+ +.++||+++.... ....+.. |...+..++|++|+++|+....
T Consensus 379 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 44 7899999875432 1222222 5667889999999988877543
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.8e-23 Score=215.34 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=182.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEeccC-CCEEEEEEcCCCCEEEEEe--CCCcEEEEe--C
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHD-HAIRSMVWSHNDNWMVSGD--DGGAIKYWQ--N 215 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs--~dg~I~iwd--~ 215 (715)
.|...|.+++|++|+++|++++ ++.|++||+.+ ++....+..+. ..|.+++|++++++|++++ .++.+.||. +
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 4678899999999999999987 78999999999 88777766663 6789999999999999988 334555554 4
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECC-CCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDS 292 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg 292 (715)
.++.. ..+.. ...+.+++|++++++|+ +++.|+.++||+++ .......+..+...+.+++|++++++|++++ .++
T Consensus 118 ~~~~~-~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 118 TGGTP-RLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp TCCCC-EECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCce-EEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 54443 23333 33489999999999877 77789999999863 2234456666778899999999999887766 589
Q ss_pred cEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeE--EEEeecCCCCeE
Q 005096 293 LVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-----------QIIKLYDIRAMKE--LESFRGHRKDVT 358 (715)
Q Consensus 293 ~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-----------g~I~iwDl~t~~~--~~~~~~h~~~V~ 358 (715)
.++||+++ .+..+..+..+...+.+++|++++++|++++.+ +.|++||+++++. +..+..|...+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 99999886 566677777788889999999999999988765 5699999988765 444557888999
Q ss_pred EEEEccCCCCEEEEEeCC
Q 005096 359 ALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~D 376 (715)
+++|++ ++++|++++.+
T Consensus 276 ~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 276 SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp SCCBCT-TSSEEEEEEEC
T ss_pred cceECC-CCCEEEEEEec
Confidence 999999 66666665544
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4.3e-23 Score=237.07 Aligned_cols=268 Identities=12% Similarity=0.007 Sum_probs=204.0
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC-
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNM- 217 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~- 217 (715)
...|++++|++||++||+++. ||+++||++++++.. .+..+. ..|.+++|++| +++++++. +....||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999998887 999999998666554 444554 68999999998 77777765 45566665433
Q ss_pred -CceeeeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC----
Q 005096 218 -NNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (715)
Q Consensus 218 -~~~~~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---- 291 (715)
......+.. ...+...+|++|++. +++.+.++.+.+||+++++......... .+++|+|||++|++++.|
T Consensus 99 ~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 211123322 223456788888854 3444455556699998887655554333 889999999999988877
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCeEEEE--------
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRAMKELESFRGHRKDVTALA-------- 361 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg--~I~iwDl~t~~~~~~~~~h~~~V~~l~-------- 361 (715)
..|++||+++++.. .+..+...+.+++|+|||++|+++..++ .|++||+.+++.. .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 78999999988755 6677888899999999999999888888 8999999998887 7777877777777
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCe---EEEEec
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT---TKFWCR 427 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~---I~iWdl 427 (715)
|+++ +.++++++.|++++||++ ++. .. ...+.|.+++|+ +++++++++.+.. |.+|+.
T Consensus 253 ~spd-g~~~~~~~~~g~~~l~~~--g~~-~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 253 YLPD-GRLAVVARREGRSAVFID--GER-VE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp ECTT-SCEEEEEEETTEEEEEET--TEE-EC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EcCC-CcEEEEEEcCCcEEEEEE--CCe-ec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 9994 599999999999999999 321 11 345678999999 9999988887754 555554
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5.8e-22 Score=209.66 Aligned_cols=240 Identities=8% Similarity=0.075 Sum_probs=182.4
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMN 218 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~dg---~I~iwd~~~~ 218 (715)
...+ +++|++|+++|++++. ++.|++||..+++. ...+..+...+.+++|++++++|+++..++ .|.+||++++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 4455 9999999997777666 88999999999988 777777766666699999999999655553 8999999998
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEE-ECCCc-EEEEECCCCeeE----EEecccCCceEEEEEcCCCCEEEEEe-CC
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTT-VKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGG-KD 291 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~-V~iwdl~~~~~~----~~l~~~~~~I~si~~spdg~~L~sgs-~D 291 (715)
+.+..+.. .....+++|++|+++|+++ ..++. |.+|++.....+ .........+.+++|++++++|++++ .+
T Consensus 119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence 88776654 4557899999999865554 55688 999998754332 12223455689999999999665554 68
Q ss_pred CcEEEEECCCCce---eEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE--EEEeecC----CC---CeE
Q 005096 292 SLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LESFRGH----RK---DVT 358 (715)
Q Consensus 292 g~I~iwDl~s~~~---~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~--~~~~~~h----~~---~V~ 358 (715)
+.|++||+++++. +..+.. ...+.+++|++|+++|++++ .++.|.+||+.+++. +..+... .. .+.
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred CeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 8999999999888 766663 46678999999999887665 477899999999887 4444322 22 235
Q ss_pred EEEEccCCCCEE-EEEeCCCcEEEEEcCCC
Q 005096 359 ALAWHPFHEEYF-VSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 359 ~l~~sp~~~~~l-~sgs~DG~I~iwd~~~~ 387 (715)
.++|++ ++++| +++..++.|.+||+...
T Consensus 277 ~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 277 QMALNK-TETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CEEECT-TSSEEEEEETTTTEEEEEETTSC
T ss_pred ceEECC-CCCEEEEecCCCCcEEEEEecCC
Confidence 689999 55555 55556779999999754
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.8e-22 Score=247.96 Aligned_cols=277 Identities=8% Similarity=-0.018 Sum_probs=224.8
Q ss_pred CCccEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCCc
Q 005096 143 NRCSINRVLWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIK-YWQNNMNN 219 (715)
Q Consensus 143 H~~~I~~l~~s-pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~tgs~dg~I~-iwd~~~~~ 219 (715)
|...|.+++|+ |||++|++++ ++.|++|++.+++.. .+..|.. .+.+++|+ |++.|++++.++.|. +|++.+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 44579999999 9999999888 789999999887654 4666777 89999999 999999988888888 99998876
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC-------
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS------- 292 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg------- 292 (715)
..... .+...+.+++|++|+++|++++.++.|++||+.+++....+..|...+.+++|+||+++|++++.++
T Consensus 371 ~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 371 AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 65444 7778999999999999999999999999999999888887778888999999999999998887654
Q ss_pred ---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----------------------
Q 005096 293 ---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----------------------- 346 (715)
Q Consensus 293 ---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~----------------------- 346 (715)
.|++||+.+++ +..+..+...+.+++|++||++|++++.++...+|+......
T Consensus 450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 528 (1045)
T ss_dssp CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence 89999999877 667777888899999999999999999887777776433211
Q ss_pred --------------------EEEeecCCCCeEEEEEccCCCCEEEE-------------EeCCCcEEEEEcCCCCceEEE
Q 005096 347 --------------------LESFRGHRKDVTALAWHPFHEEYFVS-------------GSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 347 --------------------~~~~~~h~~~V~~l~~sp~~~~~l~s-------------gs~DG~I~iwd~~~~~~~~~~ 393 (715)
+..+..+...+..+++++ ++.++++ ...+..|++||+.+.... .
T Consensus 529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~--~ 605 (1045)
T 1k32_A 529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--E 605 (1045)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--E
T ss_pred CcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcEE--E
Confidence 122333556788999999 6666664 123446788888776532 2
Q ss_pred eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 394 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+. ..+.+++|++||++|++++.| .|++||++...
T Consensus 606 l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 606 VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 22 468899999999999999866 89999997655
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.2e-22 Score=249.67 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=228.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+.+|...|.+++|+++ +++++++.|+.+.||++.. +.....+..|. .+.+++|++|+++|+++ .++.|++|++..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 45789999999999988 6667788889999997653 33455555555 45677999999998887 489999999955
Q ss_pred CceeeeecC-----------CCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-ceEEEEEcCCCCE
Q 005096 218 NNVKANKSA-----------HKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSL 284 (715)
Q Consensus 218 ~~~~~~~~~-----------h~~~I~~l~~s-pd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-~I~si~~spdg~~ 284 (715)
..+. .+.. +...+.+++|+ +|+++|++++ ++.|++||+.+++.. .+..+.. .+.+++|+ |++.
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCe
Confidence 4443 4433 23468999999 9999999888 789999999877644 4556666 89999999 9999
Q ss_pred EEEEeCCCcEE-EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 285 LVSGGKDSLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 285 L~sgs~Dg~I~-iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
|++++.++.|. +||+.+++.. .+..+...+.+++|++||++|++++.++.|++||+.+++....+..|...+.+++|+
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 99999888898 9999876644 444677889999999999999999999999999999999888887899999999999
Q ss_pred cCCCCEEEEEeCCC----------cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 364 PFHEEYFVSGSLDG----------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 364 p~~~~~l~sgs~DG----------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
| ++++|++++.++ .|++||+.++. ...+..|...+.+++|++||++|++++.++...+|+..
T Consensus 430 p-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 430 D-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp T-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred C-CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9 778777776543 89999998765 34455677889999999999999999999888888754
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.7e-22 Score=237.17 Aligned_cols=274 Identities=11% Similarity=0.121 Sum_probs=199.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE-EEEeccC-----------------CCEEEEEEcCCCCEEEEEeCCC
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-MILQAHD-----------------HAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~-~~l~~h~-----------------~~V~~l~~spdg~~L~tgs~dg 208 (715)
+..+.|+ |+.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|++| ++|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557888 66788888888 8 9999998873 3333332 46999999999 6666554 59
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----CeeEEEecccCCc-----------
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEERSLTGHGWD----------- 272 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-----~~~~~~l~~~~~~----------- 272 (715)
.|++||+.+++.... ..+...+.+++|++|+++|+++ .|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 999999998866544 4456778999999999999985 678999999988 7665544433332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEec--cCCCc
Q 005096 273 ---VKSVDWHPTKSLLVSGG---------------------------------KDSLVKLWDAKSGRELCSFH--GHKNM 314 (715)
Q Consensus 273 ---I~si~~spdg~~L~sgs---------------------------------~Dg~I~iwDl~s~~~~~~~~--~~~~~ 314 (715)
+.+++|+|||++|++++ .+..|++||+++++...... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48999999999999987 44679999999887654432 45677
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEee-c-CCC---CeEEEEEcc-CCCCEEEEEeCCCcEEEEE
Q 005096 315 VLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR-G-HRK---DVTALAWHP-FHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~-~-h~~---~V~~l~~sp-~~~~~l~sgs~DG~I~iwd 383 (715)
+.+++|++|+++|++++.++ .|++||+.+++.+..+. . +.. .+.+++|++ .++++|++++.|+.++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988775 89999999984333332 2 222 246789998 2455888899999999998
Q ss_pred cCCCCceEEEeeccCCCEEE-EEEcCCCCEEEEEECC-C----eEEEEecC
Q 005096 384 VGHETPQVEIHNVHDNTVWD-LAWHPIGYLLCSGSND-H----TTKFWCRN 428 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~-l~~spdg~~L~sgs~D-g----~I~iWdl~ 428 (715)
++........+..+...|.+ ++|++|++.|+.++.+ + .|..|+++
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 87444445555566777876 7999999887766554 3 45555543
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2e-21 Score=207.49 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=189.3
Q ss_pred EEEEEeC----CCeEEEEeC--CCCceEE-EEeccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCce--eeeec
Q 005096 158 RLITGSQ----SGEFTLWNG--QSFNFEM-ILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNV--KANKS 225 (715)
Q Consensus 158 ~Latgs~----dg~I~Iwd~--~~~~~~~-~l~~h~~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~~~~--~~~~~ 225 (715)
+|++|+. ++.|++|++ ++++... ....+...+..++|++|++ |++++. ++.|++|++.+++. +..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 3555533 445777654 4555543 3344567788899999999 555443 68999999977653 33334
Q ss_pred CCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC-C--eeEEEeccc---------CCceEEEEEcCCCCEEEEEeCCC
Q 005096 226 AHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-C--QEERSLTGH---------GWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~-~--~~~~~l~~~---------~~~I~si~~spdg~~L~sgs~Dg 292 (715)
.+...+..++|++|+++|++++ .++.|.+||+.. + +.+..+... ...+.+++|++|++++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5677889999999999998888 678999999963 2 233333221 22488999999999666666788
Q ss_pred cEEEEECC-CCceeE--Eecc-CCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCC--CeE--EEEeecCC------CCe
Q 005096 293 LVKLWDAK-SGRELC--SFHG-HKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA--MKE--LESFRGHR------KDV 357 (715)
Q Consensus 293 ~I~iwDl~-s~~~~~--~~~~-~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t--~~~--~~~~~~h~------~~V 357 (715)
.|++||++ +++... .+.. ....+..++|++||++|+++ ..++.|++||++. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 454322 2222 23467889999999977765 5678999999874 543 23333322 358
Q ss_pred EEEEEccCCCCEE-EEEeCCCcEEEEEcCCCCc--eEEEeeccCCCEEEEEEcCCCCEEEEEECC-CeEEEEecCCC
Q 005096 358 TALAWHPFHEEYF-VSGSLDGSIFHWLVGHETP--QVEIHNVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRP 430 (715)
Q Consensus 358 ~~l~~sp~~~~~l-~sgs~DG~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl~~~ 430 (715)
..++|++ ++++| ++...++.|.+|+++.... .......+...+.+++|++|+++|++++.+ +.|.+|+++..
T Consensus 243 ~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 243 AAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp EEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence 8999999 56654 6777789999999974322 222333445578999999999988888764 89999988654
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.5e-21 Score=204.12 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=189.3
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceEEEEeccC-----CCEEEEEEcCCCCEEEEEe------------CC
Q 005096 146 SINRVLWTPTGRRLIT-GSQSGEFTLWNGQSFNFEMILQAHD-----HAIRSMVWSHNDNWMVSGD------------DG 207 (715)
Q Consensus 146 ~I~~l~~spdg~~Lat-gs~dg~I~Iwd~~~~~~~~~l~~h~-----~~V~~l~~spdg~~L~tgs------------~d 207 (715)
.+.+++|++++++|++ +..++.|++||+.+++.+..+.... ..+.+++|++++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 4778999999987654 4557899999999998887766421 2567899999999998886 57
Q ss_pred CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+.|.+||+.+++....+.. ...+.+++|++++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+++++.|++
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 9999999998887766654 4568889999999988887 68899999999988777764431 123478898886655
Q ss_pred EeCCC------------------------cEEEEECCCCcee-EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 288 GGKDS------------------------LVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 288 gs~Dg------------------------~I~iwDl~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
.+.++ .|.+||+++++.. ..+..+...+.+++|++|+++|+++ ++.|++||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 44332 4689999988764 2234455678899999999999988 7999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 343 t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+++.+..+.. ...+.+++|++ ++++|++++.++.|++||+.+.+....+.
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 269 KNASIKRVPL-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTEEEEEEEC-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCcCcceecC-CCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9998887764 35688999999 67777778889999999998876554443
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.2e-20 Score=201.30 Aligned_cols=242 Identities=9% Similarity=0.095 Sum_probs=175.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNN 216 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~---dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~ 216 (715)
+...+..++|++||+ |++++. ++.|++||+.+++ .+..+..+...+..++|++|+++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 445677899999999 665554 6899999997765 3444455777889999999999888877 67999999986
Q ss_pred C-Cc--eeeeecC---------CCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEE--Eecc-cCCceEEEEEcC
Q 005096 217 M-NN--VKANKSA---------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEER--SLTG-HGWDVKSVDWHP 280 (715)
Q Consensus 217 ~-~~--~~~~~~~---------h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~--~l~~-~~~~I~si~~sp 280 (715)
. +. .+..+.. ....+.+++|++|++++++...++.|++||+. +++... .+.. ....+..++|++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3 22 2222211 12348899999999966666668899999998 443322 2222 234678899999
Q ss_pred CCCEEEE-EeCCCcEEEEECCC--Cce--eEEeccCC------CceEEEEEcCCCCEEEE-EECCCeEEEEECC---CCe
Q 005096 281 TKSLLVS-GGKDSLVKLWDAKS--GRE--LCSFHGHK------NMVLCVKWNQNGNWVLT-ASKDQIIKLYDIR---AMK 345 (715)
Q Consensus 281 dg~~L~s-gs~Dg~I~iwDl~s--~~~--~~~~~~~~------~~I~sl~~spdg~~Las-gs~dg~I~iwDl~---t~~ 345 (715)
|+++|++ ...++.|++||++. ++. +..+.... ..+..++|++||++|++ ...++.|.+||+. +.+
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996665 45678999999874 432 22222222 45889999999998854 5568999999997 335
Q ss_pred EEEEeecCCCCeEEEEEccCCCCEEEEEeC-CCcEEEEEcCC
Q 005096 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGH 386 (715)
Q Consensus 346 ~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG~I~iwd~~~ 386 (715)
.+..+..+...+..++|++ ++++|++++. ++.|.+|+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred EeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence 6666776677889999999 6776666664 58999997654
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=234.75 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=202.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEeCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDD---------GGAIKYWQNN 216 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~tgs~---------dg~I~iwd~~ 216 (715)
+++|++||+ +++.+.|++|++||+.+++....+..+.. .|.+++||+||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 678999995 45455799999999999998877776644 4899999999999998876 6899999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCce-----------------EEEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV-----------------KSVDW 278 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I-----------------~si~~ 278 (715)
+++.+... .....+..++|+|||+.|+++. |+.|++||+.+++..... .++...| .+++|
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 88763111 1135688999999999999886 779999999887665432 2222212 58999
Q ss_pred cCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EE------eccCCCceE
Q 005096 279 HPTKSLLVSGGKDS----------------------------------LVKLWDAKSGREL--CS------FHGHKNMVL 316 (715)
Q Consensus 279 spdg~~L~sgs~Dg----------------------------------~I~iwDl~s~~~~--~~------~~~~~~~I~ 316 (715)
+|||++|++++.|. .|++||+.+++.+ .. +..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999987652 7889999987653 12 235777899
Q ss_pred EEEEcCCCCEEEEEECC----CeEEEEE----CCCCeEEEEe----ecCCCCeE-----EEEEccCCCCEEE-EEeCCCc
Q 005096 317 CVKWNQNGNWVLTASKD----QIIKLYD----IRAMKELESF----RGHRKDVT-----ALAWHPFHEEYFV-SGSLDGS 378 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d----g~I~iwD----l~t~~~~~~~----~~h~~~V~-----~l~~sp~~~~~l~-sgs~DG~ 378 (715)
+++|++|++++++.... ..|++|| +.+++....+ ..+...+. .++|++++..+++ +...+|.
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 99999998777664432 2488999 8887766555 46666676 8899995444444 4556664
Q ss_pred --EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC-----CeEEEEecCC
Q 005096 379 --IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-----HTTKFWCRNR 429 (715)
Q Consensus 379 --I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~ 429 (715)
|++||+..+. ...+..+...|..+.++ +++.|+..+.+ +.++||.++.
T Consensus 337 ~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 337 KHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 5666665544 23444455668888777 88777777665 8899999876
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=2.2e-20 Score=200.66 Aligned_cols=271 Identities=8% Similarity=0.093 Sum_probs=188.8
Q ss_pred CEEEEEeC----CCeEEEEeC--CCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--Cce--ee
Q 005096 157 RRLITGSQ----SGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNM--NNV--KA 222 (715)
Q Consensus 157 ~~Latgs~----dg~I~Iwd~--~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd~~~--~~~--~~ 222 (715)
.++++|+. ++.|++|++ ++++.......+...+..++|++|+++|++++.+ +.|.+|+++. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 35566643 567888865 4555544333367778899999999999988875 7999998765 433 22
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEe------cc--------cCCceEEEEEcCCCCEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSL------TG--------HGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l------~~--------~~~~I~si~~spdg~~L~s 287 (715)
....+......+++ ++++|++++ .++.|.+|++.....+..+ .+ +...+.+++|+||+++|++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 33335566777887 888877776 5789999999754332211 11 1223578999999997766
Q ss_pred Ee-CCCcEEEEECCCCce------e-------EEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE--EEEe
Q 005096 288 GG-KDSLVKLWDAKSGRE------L-------CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LESF 350 (715)
Q Consensus 288 gs-~Dg~I~iwDl~s~~~------~-------~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~--~~~~ 350 (715)
++ .++.|++|+++.... + .........+.+++|++|+++|++++ .++.|.+||+++++. +..+
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 55 478999998875431 1 11223455688999999999888877 689999999987754 3333
Q ss_pred e---cCCCCeEEEEEccCCCCEEEEEeC--CCcEEEEEcCC--CCc-eEEEeeccCCCEEEEEEcCCCCEEEEEE-CCCe
Q 005096 351 R---GHRKDVTALAWHPFHEEYFVSGSL--DGSIFHWLVGH--ETP-QVEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHT 421 (715)
Q Consensus 351 ~---~h~~~V~~l~~sp~~~~~l~sgs~--DG~I~iwd~~~--~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~ 421 (715)
. .+......++|++ ++++|++++. ++.|.+|+++. +.. ....... ...+.+++|++||++|++++ .++.
T Consensus 252 ~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 252 AADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp ESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred ecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence 2 2335578999999 6776655554 58999999963 221 1222222 45788999999999888887 6799
Q ss_pred EEEEecCCCC
Q 005096 422 TKFWCRNRPG 431 (715)
Q Consensus 422 I~iWdl~~~~ 431 (715)
|.+|+++...
T Consensus 330 v~v~~~d~~~ 339 (361)
T 3scy_A 330 IQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEEECCC
Confidence 9999886543
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=3.8e-21 Score=204.03 Aligned_cols=274 Identities=10% Similarity=0.013 Sum_probs=193.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
.++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|++++++++ ++..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999999888877544 2578999999998665 555789999999999887766543
Q ss_pred C------CCCeEEEEEecCCCEEEEEECC------------CcEEEEECCCCee---EEEecccCCceEEEEEcCCCCEE
Q 005096 227 H------KESVRDLSFCRTDLKFCSCSDD------------TTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 227 h------~~~I~~l~~spd~~~Las~s~D------------g~V~iwdl~~~~~---~~~l~~~~~~I~si~~spdg~~L 285 (715)
. ...+.+++|++|+++|++++.+ +.|.+||+.+++. +..+. +...+.+++|++|++ |
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 2 2347889999999999998865 8999999987433 33333 334688999999999 5
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCC------------------------ceEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKN------------------------MVLCVKWNQNGNWVLTAS-KDQIIKLYD 340 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~------------------------~I~sl~~spdg~~Lasgs-~dg~I~iwD 340 (715)
++++ +.|++||+++++.+..+..... ...++++++++....... ....+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 5554 3499999999988777653320 344566665542211100 011122245
Q ss_pred CCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 341 IRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 341 l~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
+.+++. +..+..+...+.+++|++.++++|+++ ++.|.+||+.+.+....+.. ...+.+++|++++++|++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCC
Confidence 444432 122233566788999998345566666 88999999988765444432 3457899999999888888889
Q ss_pred CeEEEEecCCC
Q 005096 420 HTTKFWCRNRP 430 (715)
Q Consensus 420 g~I~iWdl~~~ 430 (715)
+.|++||++..
T Consensus 316 ~~v~v~d~~~~ 326 (349)
T 1jmx_B 316 NDLAVFNPDTL 326 (349)
T ss_dssp SEEEEEETTTT
T ss_pred CeEEEEecccc
Confidence 99999998653
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.2e-20 Score=200.78 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=193.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEC
Q 005096 186 DHAIRSMVWSHNDNWMVSGDD-------GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDF 257 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~-------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~V~iwdl 257 (715)
...+..++|++++++|++++. ++.|.+||..+++.+..+.. ...+..++|++++++++++ ..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999887774 56899999999887777654 3457889999999966555 45799999999
Q ss_pred CCCeeEEEecccCC---------ceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE
Q 005096 258 ARCQEERSLTGHGW---------DVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 258 ~~~~~~~~l~~~~~---------~I~si~~spdg~~L~sgs--~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
++++.+..+..+.. .+.+++|++++++|++++ .++.|.+||+++++.+..+..+...+.+++|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 99988877765432 278999999999877776 4788999999999988888756666889999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE
Q 005096 327 VLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~ 402 (715)
|++++.++.|.+||+.+++.+..+.. +...+.+++|++++..++++...++.|.+||..+.+....+.... ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~ 275 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SL 275 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---Cc
Confidence 99999999999999999999888765 455688999999444445555556999999998877655554322 25
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEecCCC
Q 005096 403 DLAWHPIGYLLCSGS-NDHTTKFWCRNRP 430 (715)
Q Consensus 403 ~l~~spdg~~L~sgs-~Dg~I~iWdl~~~ 430 (715)
+++|++++++|++++ .++.|.+||++..
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 799999998666555 6999999998653
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=3.7e-20 Score=198.87 Aligned_cols=261 Identities=6% Similarity=0.030 Sum_probs=184.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC--Cce--EEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQS----GEFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW 213 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~d----g~I~Iwd~~~--~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iw 213 (715)
+...+..++|++||++|++++.+ +.|.+|+++. ++. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999886 7999998765 433 3333445567888888 788777665 57899999
Q ss_pred eCCCCceeeee------c--------CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCee-------------EEE
Q 005096 214 QNNMNNVKANK------S--------AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE-------------ERS 265 (715)
Q Consensus 214 d~~~~~~~~~~------~--------~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~-------------~~~ 265 (715)
++.....+..+ . .+...+.+++|++|+++|++++. ++.|++|+++.... ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 98754322211 1 11234588999999997766654 78999999865431 122
Q ss_pred ecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eEEec---cCCCceEEEEEcCCCCEEEEEECC--CeEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRE--LCSFH---GHKNMVLCVKWNQNGNWVLTASKD--QIIK 337 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~~--~~~~~---~~~~~I~sl~~spdg~~Lasgs~d--g~I~ 337 (715)
.......+..++|++|+++|++++ .++.|.+||+++++. +..+. .+.....+++|++|+++|++++.+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233456688999999999887777 689999999987654 22222 233457899999999999877765 8999
Q ss_pred EEECC--CCe--EEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEc
Q 005096 338 LYDIR--AMK--ELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWH 407 (715)
Q Consensus 338 iwDl~--t~~--~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s 407 (715)
||++. +++ .+..+.. ...+.+++|++ ++++|++++ .++.|.+|+++......... ..+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 344 4555554 56788999999 677666666 67899998776433322322 2345678899886
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.7e-21 Score=216.09 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=158.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceEE-----EEeccCCCEEEEEEcCCCCEEE----EE
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----------NFEM-----ILQAHDHAIRSMVWSHNDNWMV----SG 204 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----------~~~~-----~l~~h~~~V~~l~~spdg~~L~----tg 204 (715)
...++.+++++++.+|++++.|+ |+||+..+. ..+. ....+...|++++|++++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578899999999999999988 888863211 0111 1123566799999999999999 78
Q ss_pred eCCCcEEEEeCCCC--------c---eeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEecccCCc
Q 005096 205 DDGGAIKYWQNNMN--------N---VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272 (715)
Q Consensus 205 s~dg~I~iwd~~~~--------~---~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~ 272 (715)
+.|+.|+|||+.+. + ....+..|...|.+++|+++ +++|++++.|++|++||++++..+.....|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999997654 1 13455678999999999998 789999999999999999988777777778889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-------CCceEEEEEcCCCCEEEEE-ECCC------eEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-------KNMVLCVKWNQNGNWVLTA-SKDQ------IIKL 338 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-------~~~I~sl~~spdg~~Lasg-s~dg------~I~i 338 (715)
|++++|++++++|++++.|+.|++||++ ++....+..+ ...|.+++|++++.++++. +.|| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 5555555433 2379999999988777553 3443 3899
Q ss_pred EECCCC
Q 005096 339 YDIRAM 344 (715)
Q Consensus 339 wDl~t~ 344 (715)
||+++.
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999865
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=2.8e-21 Score=209.14 Aligned_cols=288 Identities=12% Similarity=0.055 Sum_probs=202.9
Q ss_pred ecCCCCccEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 139 SLNKNRCSINR-----VLWTPTGRRLITGSQ-SG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 139 ~l~~H~~~I~~-----l~~spdg~~Latgs~-dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
.+..|...+.. .+|||||++|++++. ++ .|++||+.+++.......+...+..++|++|+++|++++.++.|
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l 104 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL 104 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence 34455555555 889999999998887 66 48889999988877776666666678899999999999999999
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEE--EecCCCEEEEEE----------------------CCCcEEEEECCCCeeEEEe
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCS----------------------DDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~--~spd~~~Las~s----------------------~Dg~V~iwdl~~~~~~~~l 266 (715)
++||+.+++.......+...+.... +++++++++... .+..|++||+.+++... +
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l 183 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-I 183 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-E
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-e
Confidence 9999999887766666665554444 478998887432 34679999998876544 4
Q ss_pred cccCCceEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEeccCC--CceEEEEEcCCCCEEEEEEC-CC--
Q 005096 267 TGHGWDVKSVDWHP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHK--NMVLCVKWNQNGNWVLTASK-DQ-- 334 (715)
Q Consensus 267 ~~~~~~I~si~~sp-dg~~L~sgs~D------g~I~iwDl~s~~~~~~~~~~~--~~I~sl~~spdg~~Lasgs~-dg-- 334 (715)
..+...+..++|+| |++.|+.+..+ ..|.++|+.+++. ..+..+. ..+..++|++||+.|+..+. ++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 44667789999999 99988887753 3788888876543 3444333 35788999999997766443 22
Q ss_pred --eEEEEECCCCeEEE--EeecCCC---CeEEEEEccCCCCEEEEE--------eCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 335 --IIKLYDIRAMKELE--SFRGHRK---DVTALAWHPFHEEYFVSG--------SLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 335 --~I~iwDl~t~~~~~--~~~~h~~---~V~~l~~sp~~~~~l~sg--------s~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
.|++||+.+++... .+..+.. ....++|++++..++++. ..+..|++||+.++.. ..+..+..
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~ 340 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDT 340 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCC
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccC
Confidence 39999999887433 3322100 012236888444444333 4566899999987543 22333444
Q ss_pred -----------CEEEEEEcCCCCEEEEEE-CCCeEEEEecCCC
Q 005096 400 -----------TVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRP 430 (715)
Q Consensus 400 -----------~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~ 430 (715)
.+.+++|++||+.|+..+ .+|...||.++..
T Consensus 341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 578899999998887666 5788888887653
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=236.29 Aligned_cols=281 Identities=7% Similarity=0.014 Sum_probs=198.7
Q ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 146 SINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~---------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.|.+++|||||++|++++. ++.|+|||+++++.+.... ....+.+++|||||++|+++. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4789999999999998876 7899999999887621011 135688999999999999885 7899999998
Q ss_pred CCceeeee-cCCCCCe-----------------EEEEEecCCCEEEEEECCC----------------------------
Q 005096 217 MNNVKANK-SAHKESV-----------------RDLSFCRTDLKFCSCSDDT---------------------------- 250 (715)
Q Consensus 217 ~~~~~~~~-~~h~~~I-----------------~~l~~spd~~~Las~s~Dg---------------------------- 250 (715)
+++..... ..+...| .+++|+||+++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 87765433 2222222 4899999999999987652
Q ss_pred ------cEEEEECCCCeeE--------EEecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceeEEe
Q 005096 251 ------TVKVWDFARCQEE--------RSLTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWD----AKSGRELCSF 308 (715)
Q Consensus 251 ------~V~iwdl~~~~~~--------~~l~~~~~~I~si~~spdg~~L~sgs~D----g~I~iwD----l~s~~~~~~~ 308 (715)
.|++||+.+++.+ ..+..+...+.+++|+||++++++.... ..|.+|| ++++++...+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999887642 1233577789999999998777664432 2488899 8777665444
Q ss_pred ----ccCCCceE-----EEEEcCCCCEEEE--EECCC--eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 309 ----HGHKNMVL-----CVKWNQNGNWVLT--ASKDQ--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 309 ----~~~~~~I~-----sl~~spdg~~Las--gs~dg--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
..+...+. +++|++||+.|+. ...++ .|.+||+.+++ ...+..+...+..+.++ +++.+++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 35666666 8899999996654 33455 57778887665 45566666678887777 45555555554
Q ss_pred ----CCcEEEEEcCC--CCceEEEeec----cCCCEEEEEEcCCCCEEEE-EECC--CeEEEEecCCC
Q 005096 376 ----DGSIFHWLVGH--ETPQVEIHNV----HDNTVWDLAWHPIGYLLCS-GSND--HTTKFWCRNRP 430 (715)
Q Consensus 376 ----DG~I~iwd~~~--~~~~~~~~~~----h~~~V~~l~~spdg~~L~s-gs~D--g~I~iWdl~~~ 430 (715)
++.+++|.+.. +......+.. +...+..+.|++|+++|+. ++.+ ..+.+||++..
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 58889998765 2211222221 4567889999999876664 4433 46888987543
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=3e-21 Score=214.08 Aligned_cols=254 Identities=13% Similarity=0.189 Sum_probs=181.7
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------ceee----eecCCCCC
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-----------NVKA----NKSAHKES 230 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-----------~~~~----~~~~h~~~ 230 (715)
+.|++|+.... .....++.+++++++.+|++++.++ |+||+.... .... ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864321 1344678999999999999999888 888864211 1110 01234567
Q ss_pred eEEEEEecCCCEEE----EEECCCcEEEEECCCC--------e---eEEEecccCCceEEEEEcCC-CCEEEEEeCCCcE
Q 005096 231 VRDLSFCRTDLKFC----SCSDDTTVKVWDFARC--------Q---EERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLV 294 (715)
Q Consensus 231 I~~l~~spd~~~La----s~s~Dg~V~iwdl~~~--------~---~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I 294 (715)
|.+++|++++++|+ +++.|++|+|||+++. + .+..+.+|...|++++|+|+ +++|++++.|++|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 7788999999998654 1 24556678899999999998 7899999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEccCCC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHE 367 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------~~V~~l~~sp~~~ 367 (715)
+|||++++..+.....|...|++++|++++++|++|+.||.|++||++ ++....+..+. ..|.+++|++ +.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TY 252 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TT
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-Cc
Confidence 999999987776777788899999999999999999999999999998 56565554432 3799999998 55
Q ss_pred CEEE-EEeCCCc------EEEEEcCCCCc----eEEEee-------ccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecC
Q 005096 368 EYFV-SGSLDGS------IFHWLVGHETP----QVEIHN-------VHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRN 428 (715)
Q Consensus 368 ~~l~-sgs~DG~------I~iwd~~~~~~----~~~~~~-------~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~ 428 (715)
.+++ +.+.||. +++|++++... ...... ........+.+.++.++|++++ ..+.|.|+...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 5554 3445543 89999976531 111111 1122223344446655555544 45557776654
Q ss_pred C
Q 005096 429 R 429 (715)
Q Consensus 429 ~ 429 (715)
.
T Consensus 333 ~ 333 (434)
T 2oit_A 333 S 333 (434)
T ss_dssp T
T ss_pred C
Confidence 3
No 160
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=1e-20 Score=220.43 Aligned_cols=287 Identities=9% Similarity=-0.037 Sum_probs=205.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceEEEEeccCCCEE---------EEEEc--CCCCE-EEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITG--SQSGEFTLWNGQSFNFEMILQAHDHAIR---------SMVWS--HNDNW-MVSG 204 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latg--s~dg~I~Iwd~~~~~~~~~l~~h~~~V~---------~l~~s--pdg~~-L~tg 204 (715)
.+.+|...|.+++|++++-+++.. +.++...||....+...+.+..+...+. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788999999999876666666 5578899998655556677777776666 66666 89988 7665
Q ss_pred eC-CCcEEEEeCC--C-CceeeeecC-----CCCCeEEEEEecCCCEEEEEECC----------CcEEEEECCC------
Q 005096 205 DD-GGAIKYWQNN--M-NNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD----------TTVKVWDFAR------ 259 (715)
Q Consensus 205 s~-dg~I~iwd~~--~-~~~~~~~~~-----h~~~I~~l~~spd~~~Las~s~D----------g~V~iwdl~~------ 259 (715)
+. +..|.+|++. . ++ ...+.. +...+.+++|++|++.|++++.| ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 43 5667777765 2 33 333444 56778999999999999998876 5899999987
Q ss_pred CeeEEEec-ccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEeccCCCceEEEEEcCCCCE
Q 005096 260 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAK-SG---RELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 260 ~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~D--------g~I~iwDl~-s~---~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
++. ..+. .+...+..++|+|||++|++++.+ ..|++||++ ++ +.......+...+..++|++||++
T Consensus 177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 443 4454 556778899999999999887755 379999999 56 333344445678999999999997
Q ss_pred EEEEECCC--eEEEEECCCCeEEEEeecCCCC--------eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec
Q 005096 327 VLTASKDQ--IIKLYDIRAMKELESFRGHRKD--------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (715)
Q Consensus 327 Lasgs~dg--~I~iwDl~t~~~~~~~~~h~~~--------V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~ 396 (715)
+++++.++ .|.+||+.+++.......+... +.+++|++ ++.++++++. +.++||.++........+..
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~ 333 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAAG 333 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECCS
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEecC
Confidence 77887788 6777777666654333322221 56788888 7889999988 99999965443333455556
Q ss_pred cCCCEEEE-EEcCCCCEEEEEECCCeEEEEecCC
Q 005096 397 HDNTVWDL-AWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 397 h~~~V~~l-~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+...+..+ +++.+..++++++.+....||.++.
T Consensus 334 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 334 PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 67777777 6654444555666676667776654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.5e-19 Score=195.27 Aligned_cols=271 Identities=12% Similarity=0.084 Sum_probs=187.1
Q ss_pred EEEEEeCC--CeEEEEeC--CCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeeecC-CC
Q 005096 158 RLITGSQS--GEFTLWNG--QSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANKSA-HK 228 (715)
Q Consensus 158 ~Latgs~d--g~I~Iwd~--~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~-~~~~~~~~~~-h~ 228 (715)
+|++|+.. +.|.+|++ +++++..... .....+..++|++|+++|++++.+ .|.+|+++ ++++...... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 46777664 4555433222 233467899999999999998887 99999987 6665433221 11
Q ss_pred CCeEEEEEecCCCE--EEEEE-------------CCCcEEEEECC-CCeeEEEec----ccCCceEEEEEcCCCCEEEEE
Q 005096 229 ESVRDLSFCRTDLK--FCSCS-------------DDTTVKVWDFA-RCQEERSLT----GHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 229 ~~I~~l~~spd~~~--Las~s-------------~Dg~V~iwdl~-~~~~~~~l~----~~~~~I~si~~spdg~~L~sg 288 (715)
..+.+++|++|+++ +++++ .++++.+|+++ +++....+. .+...+.+++|++||++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23567899999984 44543 68999999997 455444333 245679999999999988877
Q ss_pred eC-CCcEEEEECC-CCcee--EEec--cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEeec----
Q 005096 289 GK-DSLVKLWDAK-SGREL--CSFH--GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIR--AMKEL---ESFRG---- 352 (715)
Q Consensus 289 s~-Dg~I~iwDl~-s~~~~--~~~~--~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~--t~~~~---~~~~~---- 352 (715)
+. ++.|++||++ +++.. ..+. .+...+..++|++||++|++++. ++.|.+|+++ +++.. ..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6799999998 67643 2333 23567899999999999988875 6899999875 45542 22221
Q ss_pred ---CCC------CeEEEE-EccCCCCEEEEEeC-CC-----cEEEEEcCCCCceEE---EeeccCCCEEEEEEcC---CC
Q 005096 353 ---HRK------DVTALA-WHPFHEEYFVSGSL-DG-----SIFHWLVGHETPQVE---IHNVHDNTVWDLAWHP---IG 410 (715)
Q Consensus 353 ---h~~------~V~~l~-~sp~~~~~l~sgs~-DG-----~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~sp---dg 410 (715)
+.. .+..++ |++ ++++|++++. +. .|.+|+++....+.. ....+...+..++|++ ||
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 121 488999 999 6666665543 23 899999964333332 1222444567889999 89
Q ss_pred CEEEEEECC-CeEEEEecCCC
Q 005096 411 YLLCSGSND-HTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sgs~D-g~I~iWdl~~~ 430 (715)
++|++++.+ +.|++|+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998864 89999999754
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=3.6e-20 Score=200.33 Aligned_cols=282 Identities=10% Similarity=0.005 Sum_probs=192.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 145 CSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
..+.+++|+|||++|+++..+ ..|++||+.+++.......+...+..+.|++|+++|+.++.++.|++||+.+++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 346788999999998877653 46889999887765443333322334789999999999999999999999988766
Q ss_pred eeecCCCCCeEE-------------------EEEecCCCEEEEE-----ECCCcEEEEECCCCeeEEEecccCCceEEEE
Q 005096 222 ANKSAHKESVRD-------------------LSFCRTDLKFCSC-----SDDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 222 ~~~~~h~~~I~~-------------------l~~spd~~~Las~-----s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~ 277 (715)
.....+...... ++|+++++.++.+ ..+..|++||+.+++..... .+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 555434332222 3456666665543 35668999999887665444 4667789999
Q ss_pred EcC-CCCEEEEEeCC------CcEEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 005096 278 WHP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRA 343 (715)
Q Consensus 278 ~sp-dg~~L~sgs~D------g~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t 343 (715)
|++ +++.|+.++.+ ..|.+||+.+++.. .+..+ ...+..++|++|+++|++++.+ +.|++||+.+
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 999 78877766553 36888998765533 33322 3358889999999988777544 4599999988
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCEEEEEe----------------CCCcEEEEEcCCCCceEEEeeccCC--------
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGS----------------LDGSIFHWLVGHETPQVEIHNVHDN-------- 399 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs----------------~DG~I~iwd~~~~~~~~~~~~~h~~-------- 399 (715)
++....... . ... +.|++.++++|++++ .+..|++||+.++... .+. .+..
T Consensus 274 g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~ 348 (396)
T 3c5m_A 274 LENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGD 348 (396)
T ss_dssp CCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTB
T ss_pred CCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-Ecc-CCCCcccccccc
Confidence 765443321 1 233 889883445666544 3468999999776543 222 2333
Q ss_pred ---CEEEEEEcCCCCEEEEEEC-CCeEEEEecCCCCCc
Q 005096 400 ---TVWDLAWHPIGYLLCSGSN-DHTTKFWCRNRPGDT 433 (715)
Q Consensus 400 ---~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~~~~~ 433 (715)
.+..++|++||+.|+.++. ++...||.++..+..
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 2567899999988877764 677777777644433
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.1e-18 Score=188.34 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=176.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceEEEEecc-CCCEEEEEEcCCCCE--EEEEe-------------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAH-DHAIRSMVWSHNDNW--MVSGD------------- 205 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~--L~tgs------------- 205 (715)
....+..++|++||++|++++.+ .|.+||+. +++........ .+.+.+++|++|+++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33467889999999999999888 89999987 77665443311 133556899999994 44553
Q ss_pred CCCcEEEEeCCC-Cceeeeec----CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECC-CCeeE--EEec--ccCCceE
Q 005096 206 DGGAIKYWQNNM-NNVKANKS----AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFA-RCQEE--RSLT--GHGWDVK 274 (715)
Q Consensus 206 ~dg~I~iwd~~~-~~~~~~~~----~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~-~~~~~--~~l~--~~~~~I~ 274 (715)
.++.+.+|+++. +++...+. .+...+.+++|++|+++|++++. ++.|++||++ +++.. ..+. .+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974 55443332 24567999999999998887764 6799999998 66543 2333 2356789
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECC--CCceeE---Eecc-------CCC------ceEEEE-EcCCCCEEEEEECCC
Q 005096 275 SVDWHPTKSLLVSGGK-DSLVKLWDAK--SGRELC---SFHG-------HKN------MVLCVK-WNQNGNWVLTASKDQ 334 (715)
Q Consensus 275 si~~spdg~~L~sgs~-Dg~I~iwDl~--s~~~~~---~~~~-------~~~------~I~sl~-~spdg~~Lasgs~dg 334 (715)
.++|++|+++|++++. ++.|.+|+++ +++... .+.. +.. .+.+++ |++||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999888775 6899999765 455421 2211 121 588999 999999988776432
Q ss_pred ------eEEEEECC-CCeEEE---EeecCCCCeEEEEEccC--CCCEEEEEeC-CCcEEEEEcCCC
Q 005096 335 ------IIKLYDIR-AMKELE---SFRGHRKDVTALAWHPF--HEEYFVSGSL-DGSIFHWLVGHE 387 (715)
Q Consensus 335 ------~I~iwDl~-t~~~~~---~~~~h~~~V~~l~~sp~--~~~~l~sgs~-DG~I~iwd~~~~ 387 (715)
.|.+||+. +++... .+..+...+..++|+|. ++++|++++. ++.|.||+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 565443 23345556778999995 5777777765 589999998765
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=3.3e-19 Score=210.94 Aligned_cols=278 Identities=11% Similarity=0.077 Sum_probs=194.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC-----EEEEEEcCCCCEEEEEeCC---------CcEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGDDG---------GAIK 211 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~-----V~~l~~spdg~~L~tgs~d---------g~I~ 211 (715)
...+++|++||++|+++ |++|++||+.+++....+..|... ...++||+|+++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999888886 899999999999988888877643 2448899999999988875 5677
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCce-----------------
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV----------------- 273 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I----------------- 273 (715)
+||+.+++... +..+...+...+|||||+.||.+. |+.|++||+.+++..... .++...+
T Consensus 96 ~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 99999987654 556777899999999999999885 679999999887654322 1222222
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEec---
Q 005096 274 KSVDWHPTKSLLVSGGKDS------------------------------------LVKLWDAKS---GR--ELCSFH--- 309 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg------------------------------------~I~iwDl~s---~~--~~~~~~--- 309 (715)
.++.|||||+.|+.++.|. .|+|||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3589999999998875321 488899988 73 233443
Q ss_pred ---cCCCceEEEEEcCCCCEEEEEEC----CCeEEEEECCCCe----EE--EEe--ecCCCCeE-----EEEEccCCCCE
Q 005096 310 ---GHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMK----EL--ESF--RGHRKDVT-----ALAWHPFHEEY 369 (715)
Q Consensus 310 ---~~~~~I~sl~~spdg~~Lasgs~----dg~I~iwDl~t~~----~~--~~~--~~h~~~V~-----~l~~sp~~~~~ 369 (715)
++...+..++|++|+++++.... +..|++||+.+++ +. ..+ ..+...|. .++|++ +++.
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~ 332 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNS 332 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCE
Confidence 26778999999999997766543 2379999999887 22 112 34555544 789999 5555
Q ss_pred EE-EEe-CCC--cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC-----CeEEEEecCCCC
Q 005096 370 FV-SGS-LDG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-----HTTKFWCRNRPG 431 (715)
Q Consensus 370 l~-sgs-~DG--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~~~ 431 (715)
|+ ..+ .+| .|++||+..+.. .. +......|..+.+ .|++.|+..+.. +...||.++..+
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~-~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDC-TF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSC-EE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EEEEEEcCCCceEEEEEECCCCce-Ee-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 44 554 444 477778765443 23 3333445665542 235555544433 456777765544
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=7.3e-20 Score=210.11 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=176.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCC--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFAR-- 259 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~-- 259 (715)
...|.+++|++||++|++++. ||+++||+++.++.......+...+..++|++| +++++++. +...+||++..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 467999999999999998876 999999999766655544434368999999998 77777775 45556655432
Q ss_pred -CeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC----
Q 005096 260 -CQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---- 333 (715)
Q Consensus 260 -~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---- 333 (715)
+... .+... ..+..++|++|++ .+++.+.++.+.|||+++++....... .. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33322 2345668888875 334444455566999998876555443 33 789999999999988777
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCCceEEEeeccCCCEEEEE------
Q 005096 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDNTVWDLA------ 405 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~~~~~~~~h~~~V~~l~------ 405 (715)
+.|++||+.+++.. .+..+...+..++|+| ++++|++++.++ .|++||++++... +...|...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccc
Confidence 78999999887754 6677888899999999 788888888888 8999999877654 5556666676677
Q ss_pred --EcCCCCEEEEEECCCeEEEEec
Q 005096 406 --WHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 406 --~spdg~~L~sgs~Dg~I~iWdl 427 (715)
|++||.++++++.|++++||++
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999998
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=4.4e-18 Score=181.17 Aligned_cols=258 Identities=11% Similarity=0.067 Sum_probs=185.6
Q ss_pred ccEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---C--cE
Q 005096 145 CSINRVLWTPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G--AI 210 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs---------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g--~I 210 (715)
..|..++| ||++|+... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34677788 898888653 25679999999876543 3 568899999999999877653 3 37
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC---------------------------CcEEEEECCCCeeE
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---------------------------TTVKVWDFARCQEE 263 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D---------------------------g~V~iwdl~~~~~~ 263 (715)
.+|++.+++........ . +..++|++|++.|+.++.+ ..|++||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 78888887665544433 3 9999999999998887642 57999999888764
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--- 333 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg-------~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--- 333 (715)
..+.. . .+..++|++|+ +++++..+. ...||.+++++ +..+..+ ..+.++ ++||++|++++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 55544 3 78899999999 777776542 34444444444 3344334 445544 8999998887754
Q ss_pred -----CeEEEEECCCCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 334 -----QIIKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 334 -----g~I~iwDl~t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++|| +++ .....+. .+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~-g~~~~~~-~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWD-GEIKPIA-KGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EES-SSEEEEE-CSSSEEEEEEES
T ss_pred CccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcC-CceEEEe-cCCCeEEeeeee
Confidence 3688888 55554444556677886 8998 44 88999999999999 873 3343444 357789999999
Q ss_pred CCCCEEEEEECCCeE-EEEecC
Q 005096 408 PIGYLLCSGSNDHTT-KFWCRN 428 (715)
Q Consensus 408 pdg~~L~sgs~Dg~I-~iWdl~ 428 (715)
+ .++++++.++.. .||.++
T Consensus 311 ~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 311 E--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S--SEEEEEECSSSCCEEEEES
T ss_pred C--cEEEEEcCCCChHHheEeC
Confidence 8 677777777765 888876
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=8.7e-19 Score=207.33 Aligned_cols=278 Identities=8% Similarity=0.015 Sum_probs=188.9
Q ss_pred EEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 147 INRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~d---------g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
...++|||||++|++++.+ +.++|||+.+++.. .+..+...+..++|||||+.||.+. ++.|++|++.+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3568999999999998876 56789999998754 4666778899999999999998874 68999999988
Q ss_pred Cceeeeec-CCCCCe-----------------EEEEEecCCCEEEEEECCC-----------------------------
Q 005096 218 NNVKANKS-AHKESV-----------------RDLSFCRTDLKFCSCSDDT----------------------------- 250 (715)
Q Consensus 218 ~~~~~~~~-~h~~~I-----------------~~l~~spd~~~Las~s~Dg----------------------------- 250 (715)
++...... ++...+ ..+.|||||++||.++.|.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 76554322 222222 3589999999999875322
Q ss_pred -------cEEEEECCC---Ce--eEEEec------ccCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----e
Q 005096 251 -------TVKVWDFAR---CQ--EERSLT------GHGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR----E 304 (715)
Q Consensus 251 -------~V~iwdl~~---~~--~~~~l~------~~~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~----~ 304 (715)
+|++||+.+ ++ ....+. ++...+..++|+||+++++.... +..|++||+++++ +
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 488899987 63 223333 26777999999999997665543 2369999999887 2
Q ss_pred e--EEe--ccCCCceE-----EEEEcCCCCEEE-EEEC-C--CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 305 L--CSF--HGHKNMVL-----CVKWNQNGNWVL-TASK-D--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 305 ~--~~~--~~~~~~I~-----sl~~spdg~~La-sgs~-d--g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
. ..+ ..+...|. .++|++||+.|+ ..+. + ..|++||+.+++.. .+......|..+.+ .+++.+++
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEE
Confidence 2 222 34555554 789999999877 6653 3 36888998865544 44444556666553 32455555
Q ss_pred EEeC----CCcEEEEEcCCCCceEE-Eeec----cCCCEEEEEEcCCCCEEEEEECC---CeEEEEecC
Q 005096 372 SGSL----DGSIFHWLVGHETPQVE-IHNV----HDNTVWDLAWHPIGYLLCSGSND---HTTKFWCRN 428 (715)
Q Consensus 372 sgs~----DG~I~iwd~~~~~~~~~-~~~~----h~~~V~~l~~spdg~~L~sgs~D---g~I~iWdl~ 428 (715)
+++. .+...||.++....... .+.. ....+..+.|++++++++....+ ..+.+++.+
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred EEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 5554 24455665543332221 2221 23568899999999877665543 356677664
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=5.8e-18 Score=179.38 Aligned_cols=240 Identities=8% Similarity=0.030 Sum_probs=167.5
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceEEEEeccC------CCEEEEEEcCCCCEEEEEeCC-----------
Q 005096 146 SINRVLWTPTGRRLIT-GSQSGEFTLWNGQSFNFEMILQAHD------HAIRSMVWSHNDNWMVSGDDG----------- 207 (715)
Q Consensus 146 ~I~~l~~spdg~~Lat-gs~dg~I~Iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~L~tgs~d----------- 207 (715)
.+..++|++|++++++ +..++.|++||+.+++.+..+.... ..+.+++|++|+++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 4678999999987664 4568999999999998887776432 237789999999999988865
Q ss_pred -CcEEEEeCCCCcee---eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC------------
Q 005096 208 -GAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW------------ 271 (715)
Q Consensus 208 -g~I~iwd~~~~~~~---~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~------------ 271 (715)
+.|.+||+.+++.. ..+. +...+.+++|++|++ +++++. .|++||+.+++.+..+.....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 89999999875432 2222 344688999999999 655543 499999998887776653320
Q ss_pred ------------ceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcee-EEeccCCCceEEEEEcC-CCCEEEEEECCCeE
Q 005096 272 ------------DVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQ-NGNWVLTASKDQII 336 (715)
Q Consensus 272 ------------~I~si~~spdg~~L~sgs~D-g~I~iwDl~s~~~~-~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I 336 (715)
...++++++++......... ..+..+|+.+++.. ..+......+.+++|++ |+++|+++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 23456666554211111001 11223555544321 12223456788999999 99999988 8899
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
.+||+++++.+..+.. ...+.+++|++ ++++|++++.++.|++||.++.+.+..+
T Consensus 278 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 9999999998888764 34578999999 5666666788899999999877654443
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.7e-17 Score=176.54 Aligned_cols=241 Identities=7% Similarity=0.042 Sum_probs=188.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQS------------------------GEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND 198 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~d------------------------g~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg 198 (715)
-+.|.+|+++++|+++++...+ ++|++||..+++.+..+. .+-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999988888777 479999999888877665 344678999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCc-eeeee---------cCCCCCeEEEEEec-CCCEEEEEE-CCCcEEEEECCCCeeEEEe
Q 005096 199 NWMVSGDDGGAIKYWQNNMNN-VKANK---------SAHKESVRDLSFCR-TDLKFCSCS-DDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~-~~~~~---------~~h~~~I~~l~~sp-d~~~Las~s-~Dg~V~iwdl~~~~~~~~l 266 (715)
+++++...++.|++|+.+... .+..+ ..+......|++++ ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986552 33333 23445789999999 777777776 689999999 556666666
Q ss_pred cccC----------CceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC------CCCEE
Q 005096 267 TGHG----------WDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGNWV 327 (715)
Q Consensus 267 ~~~~----------~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp------dg~~L 327 (715)
.... .....|+++++ ++++++...++.|++||.++++.+..+. .+...+.+++|++ +++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 4322 34889999998 6677777788899999999888888874 3556788999998 23222
Q ss_pred EEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 328 LTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
++...+..|++||+.+++.+..+. .+...+.+|++++ ++.++++...+++|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 222344589999999999998874 5667799999999 668888888999999999854
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=7.3e-17 Score=167.18 Aligned_cols=240 Identities=10% Similarity=0.118 Sum_probs=183.0
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec------cCCCEEEEEEc-CCCCEEEEEeC-CCcEEE
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA------HDHAIRSMVWS-HNDNWMVSGDD-GGAIKY 212 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~------h~~~V~~l~~s-pdg~~L~tgs~-dg~I~i 212 (715)
.++-..+.+|+++++++++++...++.|.+||.+ ++.+..+.. +...+.+++++ .+++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3456679999999999988888889999999987 556655542 34578999994 66666665533 789999
Q ss_pred EeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEe
Q 005096 213 WQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 213 wd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs 289 (715)
|| .+++.+..+. .+...+.+++++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 4555555443 344678999999999988877788999999964 45555553 3445689999999999888777
Q ss_pred CCCcEEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEeecCCC--CeEEEEEcc
Q 005096 290 KDSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRK--DVTALAWHP 364 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~dg-~I~iwDl~t~~~~~~~~~h~~--~V~~l~~sp 364 (715)
.++.|++||.+ ++.+..+... ...+..|+++++++++++...++ .|.+||. +++.+..+..+.. .+.++++++
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 88999999975 5666666433 35789999999999888887776 9999995 4677777765443 478999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 005096 365 FHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 365 ~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+++++++ +.|++|++|++...
T Consensus 261 -~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 -DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCcEEEE-CCCCeEEEEEcccc
Confidence 6677776 67999999998553
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=2.7e-17 Score=174.30 Aligned_cols=269 Identities=7% Similarity=0.023 Sum_probs=195.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
..|.+++|++++..++..+.++.+++| ..+....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346778888888878777888899999 34456667777778899999999998888888999999999888766554
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeC------CC
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK------DS 292 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~------Dg 292 (715)
..+...+.+++++++++++++...+ +.|.+||.++.+....+. .....+.+++++++++++++... ++
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 4566789999999999888777666 689999998766543332 23457899999999987776653 35
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCC-CeEEEEe-----ecC--CCCeEEEEEc
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA-MKELESF-----RGH--RKDVTALAWH 363 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t-~~~~~~~-----~~h--~~~V~~l~~s 363 (715)
.|..||.++++... +......+..++|++++++|+++ +.++.|.+||+++ +..+..+ ... ...+..++++
T Consensus 163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 56777766554433 32233457899999999876655 4578999999964 3322211 111 1467889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC------CEEEEEEcCCCCEEEEEECCC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------TVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~------~V~~l~~spdg~~L~sgs~Dg 420 (715)
+ +++++++...++.|.+||.+ +... ..+..+.. .+.+++|++|+..|++++.++
T Consensus 242 ~-~G~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 S-DDNLYVAMYGQGRVLVFNKR-GYPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp T-TCCEEEEEETTTEEEEECTT-SCEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred C-CCCEEEEEcCCCEEEEECCC-CCEE-EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 8 67888888888999999984 3332 33322222 688999999987776666553
No 172
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.80 E-value=1.5e-15 Score=157.24 Aligned_cols=284 Identities=7% Similarity=-0.040 Sum_probs=204.8
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
....+..+...+.+++++++|+++++...++.|.+||.. ++..... ......+.+++++++++++++...++.|..||
T Consensus 6 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 6 QELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp EEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 344566677889999999999977776668899999988 5544322 23457799999999999888777788999999
Q ss_pred CCCCceee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 215 NNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 215 ~~~~~~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
.+ ++... .+......+.++++.++++++++...++.|.+||. +++.... +......+.+++++++++++++...++
T Consensus 85 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 85 KK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 76 33322 22234567899999999988887777889999998 4443322 233456789999999998877777778
Q ss_pred cEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l 370 (715)
.|.+||. +++.... +......+.+++++++++++++...++.|.+||. +++.... +......+.++++++ +++++
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~ 239 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLW 239 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEE
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEE
Confidence 9999998 6654432 2334456889999999987666666889999999 6654332 233456789999998 67777
Q ss_pred EEEeCCCcEEEEEcCCCCceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++...++.|.+||.+ + ....+ ...+...+.++++ +++.++++.+ .+.|..++.+.
T Consensus 240 v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 240 FTEWGANKIGRLTSN-N-IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEETTTTEEEEEETT-T-EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred EeccCCceEEEECCC-C-ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 776678899999983 3 22222 2234567999999 8887766655 56676776643
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=2.4e-16 Score=163.20 Aligned_cols=238 Identities=11% Similarity=0.132 Sum_probs=177.6
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec------CCCCCeEEEEEe-cCCCEEEEEEC-CCcEEEEE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDLSFC-RTDLKFCSCSD-DTTVKVWD 256 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~------~h~~~I~~l~~s-pd~~~Las~s~-Dg~V~iwd 256 (715)
+-..+.+++++++++++++...++.|.+||.+ ++....+. .+...+.++++. .+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44678999999999988888889999999987 44444442 234578899995 56655555433 88999999
Q ss_pred CCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcCCCCEEEEEECC
Q 005096 257 FARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 257 l~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
.+++.+..+.. +...+.+|+++++++++++...++.|++||.+ ++.+..+. .+...+.+|+++++++++++...+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 55666666543 34578999999999988877788999999965 55565553 344568999999999977777788
Q ss_pred CeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCEEEEEeCCC-cEEEEEcCCCCceEEEeec-cCCCEEEEEEcCC
Q 005096 334 QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPI 409 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~DG-~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spd 409 (715)
+.|++||.. ++.+..+... ...+..|++++ +++++++...++ .|.+||.+. ..+..+... ....+.+++++++
T Consensus 185 ~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 185 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETT
T ss_pred CEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCC
Confidence 999999974 5666666543 36789999998 678888887776 999999643 333233221 2234789999999
Q ss_pred CCEEEEEECCCeEEEEecCC
Q 005096 410 GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~ 429 (715)
|+++++ +.|++|++|++..
T Consensus 262 g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 262 GSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TEEEEE-ETTTEEEEEECSC
T ss_pred CcEEEE-CCCCeEEEEEccc
Confidence 987776 6799999999854
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=6.4e-17 Score=174.75 Aligned_cols=259 Identities=11% Similarity=-0.005 Sum_probs=184.4
Q ss_pred EEEeCCCCceEEEEeccCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 169 TLWNGQSFNFEMILQAHDHAIRS-----MVWSHNDNWMVSGDD-GGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 169 ~Iwd~~~~~~~~~l~~h~~~V~~-----l~~spdg~~L~tgs~-dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
..+|..++..+..+..|...+.. .+|++|+++|++++. ++. |.+||+.+++.......+...+..++|++|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34577788888888888877776 889999999988877 663 8888999888877776666666678899999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEE--EcCCCCEEEEEe----------------------CCCcEEE
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD--WHPTKSLLVSGG----------------------KDSLVKL 296 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~--~spdg~~L~sgs----------------------~Dg~I~i 296 (715)
+.|+.++.++.|++||+.+++....+..+...+.... +++++++|+... .+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999887776666665554444 489999887432 3467999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEeecCC--CCeEEEEEccCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD------QIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHE 367 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~d------g~I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~ 367 (715)
||+.+++... +..+...+..++|+| |+++|+.+..+ ..|.++|+..++ +..+..+. ..+..++|+|++.
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCC
Confidence 9999886544 444667799999999 99999887753 378888887544 34444343 3578899999444
Q ss_pred CEEEEEeCCC----cEEEEEcCCCCceEEEe-eccCCC---EEEEEEcCCCCEEEEE---------ECCCeEEEEecCC
Q 005096 368 EYFVSGSLDG----SIFHWLVGHETPQVEIH-NVHDNT---VWDLAWHPIGYLLCSG---------SNDHTTKFWCRNR 429 (715)
Q Consensus 368 ~~l~sgs~DG----~I~iwd~~~~~~~~~~~-~~h~~~---V~~l~~spdg~~L~sg---------s~Dg~I~iWdl~~ 429 (715)
.++++...++ .|++||+.++....... ..+... ...++|++||+.|+.. ..+..|++||++.
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 4444444332 39999998776422211 110000 1123689999877754 4566899999865
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=3.4e-16 Score=166.46 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=185.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCceeeeec-CCCCCeEEEEEecCC
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDG------------------------GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTD 240 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~d------------------------g~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~ 240 (715)
-+.+.+|+++++++++++...+ +.|.+||.+++++...+. .+......|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3678999999999998887776 479999998888766553 344578999999999
Q ss_pred CEEEEEECCCcEEEEECCCCe-eEEEe---------cccCCceEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceeEEe
Q 005096 241 LKFCSCSDDTTVKVWDFARCQ-EERSL---------TGHGWDVKSVDWHP-TKSLLVSGG-KDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~-~~~~l---------~~~~~~I~si~~sp-dg~~L~sgs-~Dg~I~iwDl~s~~~~~~~ 308 (715)
+++++...++.|++||.+... .+..+ ..+......|++++ +++++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 44444 23344688999999 788777776 689999999 557777666
Q ss_pred ccC----------CCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCCEEEEEe-
Q 005096 309 HGH----------KNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGS- 374 (715)
Q Consensus 309 ~~~----------~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs- 374 (715)
... -.....|+++++ ++++++...++.|++||..+++.+..+. .+...+.+++++| +.++++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 422 234889999998 6666666788899999999899888874 4556788999987 33333332
Q ss_pred ------CCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 375 ------LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 375 ------~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+..|++||..++..+..+. ..+...+.+|+++++|.++++...++.|++|+++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 34589999998876554442 34566799999999998888888999999999864
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=2.2e-16 Score=170.45 Aligned_cols=255 Identities=10% Similarity=0.064 Sum_probs=186.2
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCCCEEEEEeC--CCcE
Q 005096 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWMVSGDD--GGAI 210 (715)
Q Consensus 149 ~l~~spdg~~Latgs~----------dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~L~tgs~--dg~I 210 (715)
.++|++|+++|++++. ++.|.+||..+++.+..+... ......++|++|+++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999998873 567999999999988887643 234667999999999998864 5899
Q ss_pred EEEeCCCCceeee-ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC-CeeEEE------ecccCCceEEEEEcCC
Q 005096 211 KYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR-CQEERS------LTGHGWDVKSVDWHPT 281 (715)
Q Consensus 211 ~iwd~~~~~~~~~-~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~-~~~~~~------l~~~~~~I~si~~spd 281 (715)
.+||+.+++.+.. +... ....+.+.+++ ..+++.+.||.+.+|+++. ++.... +...... ..+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEEC
T ss_pred EEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEeccc
Confidence 9999999988766 4322 22335566665 6788889999999999865 444311 1111111 12334566
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee--EEeccC------C----CceEEEEEcCCCCEEEEEEC-----------CCeEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGREL--CSFHGH------K----NMVLCVKWNQNGNWVLTASK-----------DQIIKL 338 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~--~~~~~~------~----~~I~sl~~spdg~~Lasgs~-----------dg~I~i 338 (715)
+..++..+.++.|.++|+...+.. ..+... . .....++|+++++.++++.. ++.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 777777888999999999755422 222110 0 11112789999888887653 348999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC--CceEEEeeccCCCEEEEEEcCCCC
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--TPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
||+.+++.+.++..+. +.+|+|++ ++++|++++. +.|.+||..+. +.+..+ .........++++|+|.
T Consensus 291 iD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred EECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCCC
Confidence 9999999999998877 99999999 6778887776 99999999887 544333 24566788999999975
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=8.7e-17 Score=173.60 Aligned_cols=267 Identities=9% Similarity=0.024 Sum_probs=190.9
Q ss_pred CCCEEEEEe------CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCC
Q 005096 155 TGRRLITGS------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~----------dg~I~iwd~~~~ 218 (715)
+++++++.. .|+.|++||..+++.+..+..+... .++|++|+++|++++. ++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666654 3679999999999998888776544 8999999999988763 577999999988
Q ss_pred ceeeeecCC------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCC-CEEEEE
Q 005096 219 NVKANKSAH------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLLVSG 288 (715)
Q Consensus 219 ~~~~~~~~h------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg-~~L~sg 288 (715)
+.+..+... ......+++++|+++|+++.. +++|.+||+++.+.+.. +... ....+.+.+++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEE
Confidence 877766432 345678999999999998874 58999999999988877 5432 22335677765 578888
Q ss_pred eCCCcEEEEECCC-CceeEE------eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCC-----
Q 005096 289 GKDSLVKLWDAKS-GRELCS------FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGHR----- 354 (715)
Q Consensus 289 s~Dg~I~iwDl~s-~~~~~~------~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h~----- 354 (715)
+.||.+.+|+++. ++.... +...... ..+.+++++..++..+.++.|.++|+.... .+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 9999999999875 554412 1111222 123345677778888889999999997543 222222111
Q ss_pred -----CCeEEEEEccCCCCEEEEEe----------CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 355 -----KDVTALAWHPFHEEYFVSGS----------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 355 -----~~V~~l~~sp~~~~~l~sgs----------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
.....++++++++.++++.. .++.|.+||+.+.+.+..+.. +. +++++|++||++|++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-
Confidence 11223788994455555444 134799999988876655543 34 999999999999998886
Q ss_pred CeEEEEecCCC
Q 005096 420 HTTKFWCRNRP 430 (715)
Q Consensus 420 g~I~iWdl~~~ 430 (715)
+.|.+||....
T Consensus 325 ~~v~v~D~~t~ 335 (361)
T 2oiz_A 325 GNVNVYDISQP 335 (361)
T ss_dssp SCEEEEECSSS
T ss_pred CeEEEEECCCC
Confidence 99999998653
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=1.7e-16 Score=186.65 Aligned_cols=274 Identities=7% Similarity=-0.040 Sum_probs=190.1
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCceEEEEe------ccCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCC
Q 005096 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDGG-----AIKYWQNNM 217 (715)
Q Consensus 154 pdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~------~h~~~V~~l~~spdg~~L~tgs~dg-----~I~iwd~~~ 217 (715)
+||++++....+ +.|++.+...++....+. .+...+..++||+||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 678877765433 245555655554443332 2334688999999999998765433 899999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCc----------------EEEEECCCCeeE--EEecc--cCCceEEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT----------------VKVWDFARCQEE--RSLTG--HGWDVKSVD 277 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~----------------V~iwdl~~~~~~--~~l~~--~~~~I~si~ 277 (715)
++....... ...+..++|++|++.|+.++.++. |++|++.++... ..+.. +...+..++
T Consensus 161 g~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 887653322 223678999999999999988766 999999876522 22222 345578999
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeEEeccCCCceEEEEEcCCCCEEEEEECC----CeEEEEEC
Q 005096 278 WHPTKSLLVSGGK-----DSLVKLWDAKS------GR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDI 341 (715)
Q Consensus 278 ~spdg~~L~sgs~-----Dg~I~iwDl~s------~~-~~~~~~~~~~~I~sl~~spdg~~Lasgs~d----g~I~iwDl 341 (715)
|++|+++|++++. +..|++||+.+ ++ .+..+..+...+.. .|+++|+.|+..+.+ +.|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999888765 56899999986 43 35556555555554 488899988877653 36999999
Q ss_pred CCCe--EEEEeecCCC--CeEEEEEccCCCCEEEEEeCCCc--EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 342 RAMK--ELESFRGHRK--DVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 342 ~t~~--~~~~~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
.++. ....+..+.. .+..++|++ ++.++++...|+. |++||+.++..... +..+.+.|..+++++++..|+.
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~-l~~~~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKI-FPLEVGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEE-ECCCSSEEEEEECCTTCSEEEE
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEe-cCCCCceEEEEecCCCCCEEEE
Confidence 8764 2344444443 688899985 7788888888885 55566645543333 3445778899999999876654
Q ss_pred E-E---CCCeEEEEecCCCC
Q 005096 416 G-S---NDHTTKFWCRNRPG 431 (715)
Q Consensus 416 g-s---~Dg~I~iWdl~~~~ 431 (715)
. + ..++|++||+....
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 3 3 24789999986544
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=2e-17 Score=192.60 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=180.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--C-CceEEEEec-----cCCCEEEEEEcCCCCEEEEEeCC---------
Q 005096 149 RVLWT--PTGRR-LITGSQ-SGEFTLWNGQ--S-FNFEMILQA-----HDHAIRSMVWSHNDNWMVSGDDG--------- 207 (715)
Q Consensus 149 ~l~~s--pdg~~-Latgs~-dg~I~Iwd~~--~-~~~~~~l~~-----h~~~V~~l~~spdg~~L~tgs~d--------- 207 (715)
...|+ |||++ |+.++. +..|++|++. . + ....+.. |...+.+++|++||++|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 44454 99998 776654 5678888876 3 3 3445555 56778999999999999988776
Q ss_pred -CcEEEEeCCC------Cceeeeec-CCCCCeEEEEEecCCCEEEEEECC--------CcEEEEECC-CC---eeEEEec
Q 005096 208 -GAIKYWQNNM------NNVKANKS-AHKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFA-RC---QEERSLT 267 (715)
Q Consensus 208 -g~I~iwd~~~------~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~D--------g~V~iwdl~-~~---~~~~~l~ 267 (715)
..|++||+.+ ++.. .+. .+...+..++|++|+++|+.++.+ ..|++||++ ++ +......
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999988 5544 344 555678889999999999988754 379999998 56 4444444
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEeccCCCc--------eEEEEEcCCCCEEEEEECCCeEE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFHGHKNM--------VLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~Dg--~I~iwDl~s~~~~~~~~~~~~~--------I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
.+...+..++|++||++++++..++ .|.+||+++++....+..+... +.+++|+++++++++++. +.++
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV 317 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence 4578899999999999888888888 6667777666644333322221 567899999999999988 9989
Q ss_pred EE--ECCCCeEEEEeecCCCCeEEE-EEccCCCCEE-EEEeCCCc--EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 338 LY--DIRAMKELESFRGHRKDVTAL-AWHPFHEEYF-VSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 338 iw--Dl~t~~~~~~~~~h~~~V~~l-~~sp~~~~~l-~sgs~DG~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
|| |+.+++ +..+..+...+..+ +++ ++.++ ++++.+.. |++||+.++.. ..+...+...+....+.....
T Consensus 318 l~~~d~~~~~-~~~l~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~ 393 (662)
T 3azo_A 318 LGILDPESGE-LVDAAGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRA-RTIGARHTDPVDPAYYPEPQI 393 (662)
T ss_dssp EEEEETTTTE-EEECCSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCE-EEEESCCCCSSCGGGSCCCEE
T ss_pred EEEEECCCCc-EEEecCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCce-EEeecCCcccCCccccCcceE
Confidence 98 665555 67777777778777 554 34444 44455544 44455545432 233333333332222332233
Q ss_pred EEEEEECCCeEEEEec
Q 005096 412 LLCSGSNDHTTKFWCR 427 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl 427 (715)
+.+....+..|..|-+
T Consensus 394 ~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 394 RTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEE
Confidence 3333333345666654
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=4.3e-17 Score=191.36 Aligned_cols=273 Identities=7% Similarity=-0.110 Sum_probs=184.1
Q ss_pred CCCCEEEEEeCCC-----eEEEEeCCCCceEEEEe------ccCCCEEEEEEcCCCCEEEEE-----eCCCcEEEEeCCC
Q 005096 154 PTGRRLITGSQSG-----EFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSG-----DDGGAIKYWQNNM 217 (715)
Q Consensus 154 pdg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~------~h~~~V~~l~~spdg~~L~tg-----s~dg~I~iwd~~~ 217 (715)
++|++++....++ .|++.+...++....+. +|...+.+++||+||++|+.+ +.+..|++||+++
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6888888766543 34555555555444443 244468999999999999843 3346899999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCc-------------EEEEECCCCee----EEEecccCCceEEEEEcC
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------------VKVWDFARCQE----ERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-------------V~iwdl~~~~~----~~~l~~~~~~I~si~~sp 280 (715)
++.+............++|++|++.|+.++.|.. |++|++.++.. +.....+...+.++.|++
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp 236 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence 8764111111112268999999999999998776 99999987652 222233445788999999
Q ss_pred CCCEEEEEeCCC----cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE--EEEe
Q 005096 281 TKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKE--LESF 350 (715)
Q Consensus 281 dg~~L~sgs~Dg----~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~----dg~I~iwDl~t~~~--~~~~ 350 (715)
||++|++++.++ .|++||..+++ ...+..+...+....| ++++ |+..+. ++.|.+||+.+++. ...+
T Consensus 237 DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 313 (695)
T 2bkl_A 237 DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI 313 (695)
T ss_dssp TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence 999888877665 67777766554 3444445555666666 5666 554443 57899999987653 2333
Q ss_pred ecC--CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEE----CCCeEE
Q 005096 351 RGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGS----NDHTTK 423 (715)
Q Consensus 351 ~~h--~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs----~Dg~I~ 423 (715)
..+ ...|..++|+ ++.++++...|+..+||.++........+..+ .+.|..+++++++..|+... ..++|+
T Consensus 314 ~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 314 VPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp ECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred ecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 333 4557888887 67888999999998888765333233333333 56788889999987666333 247899
Q ss_pred EEecCCCC
Q 005096 424 FWCRNRPG 431 (715)
Q Consensus 424 iWdl~~~~ 431 (715)
+||+....
T Consensus 392 ~~d~~~g~ 399 (695)
T 2bkl_A 392 KTSVSTGK 399 (695)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99986543
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=2e-16 Score=186.08 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=180.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc-------
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~------- 209 (715)
+|...+.+++|||||++||.+..++ .|+|||+.+++.+.....+ ..+..++|++|++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555789999999999999776543 8999999998877643322 23668999999999998887765
Q ss_pred ---------EEEEeCCCCce----eeeecCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECCC------Ce-eEE
Q 005096 210 ---------IKYWQNNMNNV----KANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFAR------CQ-EER 264 (715)
Q Consensus 210 ---------I~iwd~~~~~~----~~~~~~h~~~I~~l~~spd~~~Las~s~-----Dg~V~iwdl~~------~~-~~~ 264 (715)
|++|++.++.. +.....+...+..+.|++|+++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988652 2222234556889999999999888765 56899999976 42 355
Q ss_pred EecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCc--eeEEeccCCC--ceEEEEEcCCCCEEEEEECCC--
Q 005096 265 SLTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQ-- 334 (715)
Q Consensus 265 ~l~~~~~~I~si~~spdg~~L~sgs~D----g~I~iwDl~s~~--~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg-- 334 (715)
.+..+...+.. .|+++++.|+..+.+ ..|.+||+.++. ....+..+.. .+..++|++++.++++...|+
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 55555555554 478889887776653 359999998764 2344443433 688899997777788888887
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 335 ~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
.|++||+.+++.+..+..+...|..+++++++..++++.+. .++|++||+.++.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46677887788778888777788999999844445555443 4689999998765
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=4.5e-16 Score=165.48 Aligned_cols=223 Identities=10% Similarity=0.075 Sum_probs=160.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC------------
Q 005096 145 CSINRVLWTPTGRRLITGSQS---G--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------------ 207 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~d---g--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d------------ 207 (715)
..+.+++|||||++|++++.+ + .|++||+.+++........ . +.+++|++|++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357889999999999987754 3 4888899887766555543 3 9999999999998877632
Q ss_pred ---------------CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-------cEEEEECCCCeeEEE
Q 005096 208 ---------------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-------TVKVWDFARCQEERS 265 (715)
Q Consensus 208 ---------------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-------~V~iwdl~~~~~~~~ 265 (715)
..|.+||+.+++.+..+.. . .+..++|++|+ +++++..+. ...||.+.+++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 5689999988876344444 3 88899999999 777776542 334444444443 33
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEeccCCCceEE-EEEcCCCCEEEEEECCCeE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLC-VKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~D--------g~I~iwDl~s~~~~~~~~~~~~~I~s-l~~spdg~~Lasgs~dg~I 336 (715)
+..+ ..+.++ ++||++|++++.+ ..|.+|| +++....+..+...+.. +.|+ |+ ++++++.++.+
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 4334 445444 8999988877754 3688888 55544444555677886 9999 88 88899999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEEcC
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI-FHWLVG 385 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I-~iwd~~ 385 (715)
+|| +.+++. ..+..+...|.+++|++ .++++++.++.. .||.++
T Consensus 286 ~l~-~~~g~~-~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEI-KPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSE-EEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCce-EEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999 876655 34444577899999987 677777777765 777775
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=8.6e-16 Score=160.16 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=175.2
Q ss_pred CceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
...+..+..+.....+++|+++++ +++++..++.|.+|+..++ ...+..+...+.+++++++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 334455556667788999999998 7788888999999999887 4555567778999999999998877777789999
Q ss_pred EECCCCeeEEEeccc----CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeEEeccCCC
Q 005096 255 WDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 255 wdl~~~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~-----------------Dg~I~iwDl~s~~~~~~~~~~~~ 313 (715)
||..+++........ ...+.+++++++|+++++.+. .+.|..||.. ++ +..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 999777654433221 234678999999998887321 2456666655 43 444444566
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeE---EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKE---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~~~---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
....++|++++++|++.+.++.|++||+. +++. ...+..+...+.++++++ +++++++. ++.|.+||.+ +.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~- 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GD- 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SC-
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CC-
Confidence 78999999999998777778999999997 4544 333333455678899998 66766665 7899999986 33
Q ss_pred eEEEeeccCCCEEEEEE-cCCCCEEEEEECCCeEEEEecCC
Q 005096 390 QVEIHNVHDNTVWDLAW-HPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~-spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
....+..+.. +++++| .++++.|++++.++ +|.++.
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 3344444555 899999 57888888888763 455444
No 184
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.73 E-value=3.1e-14 Score=147.35 Aligned_cols=279 Identities=7% Similarity=-0.013 Sum_probs=199.6
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE-EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+......+.+|+++++|+++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|.+||..
T Consensus 14 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 344556789999999999977777778999999988 554432 22234679999999999888777778899999987
Q ss_pred Cceee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-EecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 218 NNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 218 ~~~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
++... ........+.++++.++++++++...++.|..||.. ++... .+......+.+++++++++++++...++.|.
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 54432 222234678999999999887777768899999987 44432 2333456789999999999766666678899
Q ss_pred EEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEEEccCCCCEEEEE
Q 005096 296 LWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 296 iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+||. +++.... .......+.+++++++++++++...++.|.+||. +++.... +......+.+|++++ +++++++.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEec
Confidence 9998 4554332 2233456899999999987766666778999998 4544332 334456789999998 56777776
Q ss_pred eCCCcEEEEEcCCCCceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 374 SLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
..++.|.+||.. +. ...+ .......+.+++++++|+++++.. + .|..++.
T Consensus 248 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITND-NT-IQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTTTEEEEECTT-SC-EEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cCCCeEEEECCC-Cc-EEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 677899999983 32 2222 222345688999999998666554 4 6666654
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=8.5e-16 Score=160.21 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=176.7
Q ss_pred CCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+.....+++|+++++ +++++..++.|++||..++ ...+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 4556688999999998 7778888999999999887 666777788899999999999888777778999999977765
Q ss_pred eeeecC----CCCCeEEEEEecCCCEEEEEEC-----------------CCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 221 KANKSA----HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 221 ~~~~~~----h~~~I~~l~~spd~~~Las~s~-----------------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
...... ....+.+++++++++++++.+. .+.|..+|.. + ....+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecCCCCCccEEEC
Confidence 443321 1235678999999998887321 2456666554 3 334444566678899999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCce---eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC
Q 005096 280 PTKSLLVSGGKDSLVKLWDAK-SGRE---LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~-s~~~---~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~ 355 (715)
+++++|++.+.++.|++||++ +++. ...+......+.+++++++|+++++. ++.|.+||.. ++.+..+..+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence 999988777778999999997 4544 23333345567789999999866555 8899999986 788888887777
Q ss_pred CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+++++|...+++.|++++.+ .|..++.++.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 99999953267777777765 4444555444
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=6.1e-16 Score=158.30 Aligned_cols=241 Identities=9% Similarity=-0.037 Sum_probs=175.0
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 146 ~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
...+++++++|++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||.+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998666 446788999999776544332233345688999999998666655 889999998776544332
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~ 304 (715)
......+.+++++++++++++...++.|.+||..+.............+.+|+++++++++++...++.|.+||.++...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999998777777788999998765544333223334678999999999777777788999999887654
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 305 ~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
..........+.+|+++++++++++...++.|.+||............+...+.++++++ +++++++...+++|++|+.
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcC
Confidence 433333336789999999997777776788999999876544332223346789999998 6688888889999999998
Q ss_pred CCCC
Q 005096 385 GHET 388 (715)
Q Consensus 385 ~~~~ 388 (715)
....
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6544
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=9.6e-15 Score=154.52 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=171.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd 214 (715)
.+..+...+.+++|+++|++++++..++.|++||.++++.......+...+.+++|+++++++++...+ +.|.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 445666778999999999988888889999999999887766655667889999999999988877666 6899999
Q ss_pred CCCCceeeeec--CCCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 215 NNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 215 ~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
.+++.....+. .....+.+++++++++++++... ++.|..||.++++... +......+..++|++++++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence 88876553332 24467899999999987776654 3556666665544333 222334578999999998665
Q ss_pred EE-eCCCcEEEEECCC-CceeEEe--------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-
Q 005096 287 SG-GKDSLVKLWDAKS-GRELCSF--------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK- 355 (715)
Q Consensus 287 sg-s~Dg~I~iwDl~s-~~~~~~~--------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~- 355 (715)
++ +.++.|++||+++ ++.+..+ .. ...+..++++++++++++...++.|.+||. +++.+..+.....
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~ 275 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 275 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCc
Confidence 44 5578999999964 3333211 11 146788999999998888778899999998 4677777664443
Q ss_pred -----CeEEEEEccCCCCEEEEEeCC
Q 005096 356 -----DVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 356 -----~V~~l~~sp~~~~~l~sgs~D 376 (715)
.+.+++|++ ++..|++++.+
T Consensus 276 ~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 276 EGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp GTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred cccccCcceEEECC-CCCEEEEEeCc
Confidence 689999998 44445444443
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=6.3e-17 Score=174.78 Aligned_cols=255 Identities=10% Similarity=0.004 Sum_probs=175.4
Q ss_pred EEEeCCCCceEEEEeccCCC-----EEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 169 TLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 169 ~Iwd~~~~~~~~~l~~h~~~-----V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
..+|..+++.+..+..+... +.+++|++||++|+....+ ..|.+||+.+++...........+..+.|++|+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577777777777665444 6778999999998766443 468888998887655443333333447899999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEE-------------------EEEcCCCCEEEEE-----eCCCcEEE
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS-------------------VDWHPTKSLLVSG-----GKDSLVKL 296 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~s-------------------i~~spdg~~L~sg-----s~Dg~I~i 296 (715)
++|+.++.++.|++||+.+++....+..+...... ++|+++++.++++ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999887766555544333222 3567777766554 35668999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD------QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHE 367 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~d------g~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~ 367 (715)
||+.+++..... .+...+..+.|++ +++.|+..+.+ ..|.+||+.+++.. .+..+ ...+..++|++ ++
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg 249 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DG 249 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TS
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECC-CC
Confidence 999988765544 4667799999999 78877776643 36889998765433 33323 23578899999 55
Q ss_pred CEEEEEeCC-----CcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEE----------------CCCeEEEE
Q 005096 368 EYFVSGSLD-----GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGS----------------NDHTTKFW 425 (715)
Q Consensus 368 ~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs----------------~Dg~I~iW 425 (715)
++|+.++.+ +.|++||+.++.... +.. .. .+. +.|++ |+++|++++ .+..|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEE-VMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEE-EEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEE-eee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 555444332 349999997765332 221 12 233 89999 999888765 34789999
Q ss_pred ecCCC
Q 005096 426 CRNRP 430 (715)
Q Consensus 426 dl~~~ 430 (715)
|++..
T Consensus 326 d~~~~ 330 (396)
T 3c5m_A 326 NTKAK 330 (396)
T ss_dssp ETTTT
T ss_pred ecccC
Confidence 98643
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.7e-14 Score=164.47 Aligned_cols=283 Identities=12% Similarity=0.105 Sum_probs=205.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEeCCC
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWS----HNDNWMVSGDD-GGAIKYWQNNM 217 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~s----pdg~~L~tgs~-dg~I~iwd~~~ 217 (715)
..+..++|++||++|++++.|+.|.+||+. +.+.+..+... .....++|+ +||+++++++. ++.|.|+|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356799999999999999999999999996 77888777653 346799999 69998877654 59999999999
Q ss_pred CceeeeecCC-----------CCCeEEEEEecCCCEE-EEEECCCcEEEEECCCCeeEEEe-cccCCceEEEEEcCCCCE
Q 005096 218 NNVKANKSAH-----------KESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 218 ~~~~~~~~~h-----------~~~I~~l~~spd~~~L-as~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~~spdg~~ 284 (715)
.+.+..+... ...+..+..++++..+ +....+|.|.++|..+.+..... ........++.|++++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 8877665422 1267888888876654 44556799999999775432221 123445778999999998
Q ss_pred EEEEe-CCCcEEEEECCCCceeEEecc-----CCCceEEEEEcCCCCEEE-EEE-CCCeEEEEECCC-------CeEEEE
Q 005096 285 LVSGG-KDSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVL-TAS-KDQIIKLYDIRA-------MKELES 349 (715)
Q Consensus 285 L~sgs-~Dg~I~iwDl~s~~~~~~~~~-----~~~~I~sl~~spdg~~La-sgs-~dg~I~iwDl~t-------~~~~~~ 349 (715)
|++++ .++.|.++|+++++.+..+.. |.+.-..+ +++++..++ ++. .++.|.++|..+ ++.+.+
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence 87765 578899999999987766643 22111122 577755554 443 468999999988 778888
Q ss_pred eecCCCCeEEEEEccCCCCEEEEEeC-------CCcEEEEEcCCC-----CceEEEeec--------cCCCEEEEEEcCC
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSGSL-------DGSIFHWLVGHE-----TPQVEIHNV--------HDNTVWDLAWHPI 409 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sgs~-------DG~I~iwd~~~~-----~~~~~~~~~--------h~~~V~~l~~spd 409 (715)
+......-..|..+| ++++|.+... ...|.|+|+.+. ....+++.. ....+..+.|+++
T Consensus 435 i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 435 FPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp EECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred EecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 886655556678899 6666666552 359999999876 333333321 2357899999999
Q ss_pred CCEEEEEEC-----CCeEEEEecCCC
Q 005096 410 GYLLCSGSN-----DHTTKFWCRNRP 430 (715)
Q Consensus 410 g~~L~sgs~-----Dg~I~iWdl~~~ 430 (715)
|+.|.++.. ++.|.|+|.++.
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCc
Confidence 988777643 799999997653
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=1.4e-15 Score=155.65 Aligned_cols=240 Identities=10% Similarity=-0.033 Sum_probs=174.3
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 188 AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 188 ~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
...++++++++++++ +...++.|.+|+..+.............+.+++++++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998776 446788999998766554333233445788999999988655555 889999998765443222
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
......+.+++++++++++++...++.|.+||..+.............+.+++++++++++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 22335789999999999777777788999998765544332223334678999999999777766788999999987665
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
..........+.+|++++ ++.++++...++.|.+||.+...... ....+...+.+++++++|+++++...++.|++|+
T Consensus 184 ~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp EECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 443333446789999998 56888887788899999986654322 2222335789999999999888988999999999
Q ss_pred cCCC
Q 005096 427 RNRP 430 (715)
Q Consensus 427 l~~~ 430 (715)
+...
T Consensus 262 ~~~~ 265 (270)
T 1rwi_B 262 SLEH 265 (270)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 8653
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=4.5e-15 Score=157.85 Aligned_cols=256 Identities=8% Similarity=0.002 Sum_probs=188.2
Q ss_pred CCCeEEEEeCCCCceEEEEec------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEe
Q 005096 164 QSGEFTLWNGQSFNFEMILQA------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (715)
Q Consensus 164 ~dg~I~Iwd~~~~~~~~~l~~------h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 237 (715)
.++.|.+||.++++....+.. .......+++. +++++++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 378999999999887654421 12446778774 44555666678999999999999877774 35678899998
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEec
Q 005096 238 RTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 238 pd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs--~Dg~I~iwDl~s~~~~~~~~ 309 (715)
++++ |+++. .++.|.+||..+++....+.... .....+++ +++.|+++. .++.|.+||+++++.+..+.
T Consensus 93 ~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 8884 55554 89999999999998877665332 15567777 355555555 48899999999998887776
Q ss_pred cCCCceEEEEEcCCCCEEEEEECC----------CeEEEEECCCCeEEEEeecC-CCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKD----------QIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~d----------g~I~iwDl~t~~~~~~~~~h-~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
. ......+++++++++++++..+ +.|.+||.++++.+..+... ......+++++ ++++|+++.. .
T Consensus 170 ~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~ 245 (328)
T 3dsm_A 170 I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--D 245 (328)
T ss_dssp C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--S
T ss_pred c-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--E
Confidence 4 3346788999999877666554 78999999999988777643 34789999999 5666665544 8
Q ss_pred EEEEEcCCCCceEE-EeeccCCCEEEEEEcC-CCCEEEEE----ECCCeEEEEecC
Q 005096 379 IFHWLVGHETPQVE-IHNVHDNTVWDLAWHP-IGYLLCSG----SNDHTTKFWCRN 428 (715)
Q Consensus 379 I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-dg~~L~sg----s~Dg~I~iWdl~ 428 (715)
|.+||..+.+.... +..........+++++ ++.++++. ..++.|.+||.+
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999977654311 1111245789999998 56666666 578999999986
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=4.3e-14 Score=161.16 Aligned_cols=275 Identities=11% Similarity=0.043 Sum_probs=200.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeeeecCCCCCe
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESV 231 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I 231 (715)
+++.++++...+++|.+||..+++.+..+.. ...+..+.|++|+++|++++.|+.|.+||+. +.+.+..+.. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 3445666777889999999999999988874 3467799999999999999999999999996 6777666654 3346
Q ss_pred EEEEEe----cCCCEEEEEEC-CCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCCEE-EEEeCCCcE
Q 005096 232 RDLSFC----RTDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLL-VSGGKDSLV 294 (715)
Q Consensus 232 ~~l~~s----pd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~~L-~sgs~Dg~I 294 (715)
..++|+ +|++++++++. +++|.|+|..+.+.+..+... ...+..+..++++..+ +....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69998887765 589999999998888776532 1257788888886644 445567999
Q ss_pred EEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec-CCCC--eEEEE-EccCCCC
Q 005096 295 KLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG-HRKD--VTALA-WHPFHEE 368 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~-h~~~--V~~l~-~sp~~~~ 368 (715)
.++|..+.+.+.... .......++.|++++++|++++ .++.|.++|+.+++.+..+.. .... -..+. ++++.+.
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 999998754332211 2344577899999999988776 578999999999998877764 2211 11222 4664455
Q ss_pred EEEEEe-CCCcEEEEEcCCC------CceEEEeeccCCCEEEEEEcCCCCEEEEEEC-------CCeEEEEecCCC
Q 005096 369 YFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN-------DHTTKFWCRNRP 430 (715)
Q Consensus 369 ~l~sgs-~DG~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~-------Dg~I~iWdl~~~ 430 (715)
+++++. .++.|.++|.+.. ...+..+......-..+..++++++|.+... .++|.++|++..
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 666654 4689999999873 2233333332233345778999999988763 459999999765
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=7.4e-15 Score=152.39 Aligned_cols=212 Identities=9% Similarity=0.037 Sum_probs=171.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC-CCCeE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVR 232 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~ 232 (715)
.+++|++++.|+.|.+||.++++.+..+..+. ..++++.++++|++|+ +.++.|..||. +++.+..+... ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998876 5789999999999888 35778999999 78888777664 35788
Q ss_pred EEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEecc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 233 DLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 233 ~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
++.+.+|+++|++.+. ++.|..+|. +++.+..+.. +......+++.+++++|++...++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 8999999999999887 778888885 6666665542 11235567789999999999999999999998 9999
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC------CCeEEEEEccCCCCEEEEE
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR------KDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~------~~V~~l~~sp~~~~~l~sg 373 (715)
.++... ....++.+.+++++|++++.+++|..+|..+++.+.++.... ..+..+...+ +++++++.
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~ 230 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICN 230 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEe
Confidence 888754 456678888999999999888899999999999999987432 2266777776 66666665
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.3e-14 Score=154.29 Aligned_cols=251 Identities=11% Similarity=-0.015 Sum_probs=183.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
....+++. +++++++...++.|.+||..+++.+..+. .......++++++++++++...++.|.+||..++++...+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34566664 34455555667999999999999988885 34678899998888544444488999999999988776654
Q ss_pred CCC-----CCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-------
Q 005096 226 AHK-----ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD------- 291 (715)
Q Consensus 226 ~h~-----~~I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D------- 291 (715)
... .....+++ ++..|+++. .++.|.+||+++++.+..+.. ......+++++++++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccc
Confidence 332 14566777 455555555 488999999999988877764 3456789999999877766554
Q ss_pred ---CcEEEEECCCCceeEEeccC-CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--eecCCCCeEEEEEccC
Q 005096 292 ---SLVKLWDAKSGRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPF 365 (715)
Q Consensus 292 ---g~I~iwDl~s~~~~~~~~~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~ 365 (715)
+.|.+||.++++.+..+... ......++|++++++|+++.. .|.+||..+++.... +.........++++++
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 78999999998877666532 346899999999999988765 899999988775421 1112467899999997
Q ss_pred CCCEEEEE----eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE
Q 005096 366 HEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 366 ~~~~l~sg----s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (715)
++.++++. ..++.|.+||.+ ++.+..+.. ...-..++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV--GIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE--EESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe--ccCcceEEE
Confidence 78888887 678899999997 554444432 223345554
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=3e-16 Score=184.20 Aligned_cols=243 Identities=10% Similarity=-0.031 Sum_probs=170.5
Q ss_pred CCCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceEEEEeccCCCE--EEEEEcCCCCEEEEEeCCCc----
Q 005096 141 NKNRCSINRVLWTPTGRRLITG-----SQSGEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDGGA---- 209 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latg-----s~dg~I~Iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~L~tgs~dg~---- 209 (715)
.+|...+.+++|||||++||.+ +.+.+|+|||+.+++.+. ..+...+ ..++|++|++.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 3566789999999999999944 334689999999987641 1121222 68999999999999888766
Q ss_pred ---------EEEEeCCCCc----eeeeecCCCCCeEEEEEecCCCEEEEEECCC----cEEEEECCCCeeEEEecccCCc
Q 005096 210 ---------IKYWQNNMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQEERSLTGHGWD 272 (715)
Q Consensus 210 ---------I~iwd~~~~~----~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg----~V~iwdl~~~~~~~~l~~~~~~ 272 (715)
|++|++.++. ++.....+...+..+.|++|+++|++.+.++ .|++||..+++ ...+..+...
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~ 273 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGA 273 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCc
Confidence 9999998875 3333334556789999999999998877665 67777765554 3444445556
Q ss_pred eEEEEEcCCCCEEEEEe---CCCcEEEEECCCCce---eEEeccC-CCceEEEEEcCCCCEEEEEECCCeEEEEECC-CC
Q 005096 273 VKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRE---LCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AM 344 (715)
Q Consensus 273 I~si~~spdg~~L~sgs---~Dg~I~iwDl~s~~~---~~~~~~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~ 344 (715)
+....| +++++++++. .++.|.+||+++++. ...+..+ ...|..++|+ ++.++++...|+..+||.+. ++
T Consensus 274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 666666 4566444443 257899999987653 3333333 4568888998 67788888889988887654 45
Q ss_pred eEEEEeecC-CCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 345 KELESFRGH-RKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 345 ~~~~~~~~h-~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
+.+..+..+ ...|..+++++++..++++.+. .++|++||+.++.
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666666655 5667888888844444444433 4679999998765
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=1.6e-14 Score=149.79 Aligned_cols=233 Identities=11% Similarity=0.042 Sum_probs=185.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCceE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVK 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~I~ 274 (715)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+++++++|+ +.++.|+.||. +++.+..+... ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46889999999999999999999998887765 5789999999999888 45788999998 78888888764 35788
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEecc------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 275 SVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 275 si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~~~~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
++.+.++|++|++.+. ++.|..+|. +++.+.++.. +......+++.++|++|++...++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 778888885 6777776642 11234566788999999999999999999998 9999
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-----CCCEEEEEEcCCCCEEEEEECC---
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-----DNTVWDLAWHPIGYLLCSGSND--- 419 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~L~sgs~D--- 419 (715)
.++... ..+.++.+.+ ++++|++++.+++|..+|..+++.+.++.... ...+..+...++|.++++....
T Consensus 159 w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT
T ss_pred EEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccc
Confidence 998865 3456677777 78899988888899999998888777765321 1237889999999988887522
Q ss_pred -----CeEEEEecCCCCCcccc
Q 005096 420 -----HTTKFWCRNRPGDTARD 436 (715)
Q Consensus 420 -----g~I~iWdl~~~~~~~~~ 436 (715)
+..++++++..++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEE
T ss_pred cccccCCceEEEECCCCCEEEE
Confidence 24578888777766544
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.66 E-value=3.8e-13 Score=145.69 Aligned_cols=271 Identities=9% Similarity=-0.068 Sum_probs=188.3
Q ss_pred EcCCCCEEEEEeC--CC---eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 005096 152 WTPTGRRLITGSQ--SG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNN 216 (715)
Q Consensus 152 ~spdg~~Latgs~--dg---~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~ 216 (715)
..+++++++++.. .. +|.+||..+++.+..+...... .+++++|+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777777664 22 7899999999988877754444 999999999998875 36789999999
Q ss_pred CCceeeeecCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCC-CEE
Q 005096 217 MNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLL 285 (715)
Q Consensus 217 ~~~~~~~~~~h-------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg-~~L 285 (715)
+.+.+..+... ...-..++|++|+++|++++. ++.|.++| .+++.+.. +.... ++.+.+++ +.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceE
Confidence 88777665432 133458999999999998874 47899999 99888777 54322 24445554 456
Q ss_pred EEEeCCCcEEEEECCCCceeEEec-----cCCCc-eEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEeecC----
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFH-----GHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH---- 353 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~-I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h---- 353 (715)
++.+.||.+.+||+ +++.+.... ..... .....+.+++..++..+.++.|.+.|+.+.. .+..+...
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 67778999999999 877663322 11111 2334566666655555578899999997542 23333211
Q ss_pred ------CCCeEEEEEccCCCCEEEEEe---------CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE
Q 005096 354 ------RKDVTALAWHPFHEEYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS 417 (715)
Q Consensus 354 ------~~~V~~l~~sp~~~~~l~sgs---------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs 417 (715)
......+++++++++++++.. .++.|.++|..+.+.+..+.. ....++++|++||+ +|+++.
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEc
Confidence 122344788884444444433 135799999988877666643 33689999999998 777777
Q ss_pred -CCCeEEEEecCCCCC
Q 005096 418 -NDHTTKFWCRNRPGD 432 (715)
Q Consensus 418 -~Dg~I~iWdl~~~~~ 432 (715)
.++.|.+||....+.
T Consensus 338 ~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 338 AGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCeEEEEECCCCCE
Confidence 589999999875443
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=7.3e-14 Score=145.97 Aligned_cols=239 Identities=10% Similarity=0.092 Sum_probs=172.7
Q ss_pred CccEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceEEEEe----ccCCCEEEEEEcCC-CCEEEEEeCCCcEE
Q 005096 144 RCSINRVLWTPTGRRLIT-------GSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHN-DNWMVSGDDGGAIK 211 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Lat-------gs~dg~I~Iwd~~~~~~~~~l~----~h~~~V~~l~~spd-g~~L~tgs~dg~I~ 211 (715)
-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++++++ +.++.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence 345789999999987777 5778899999988877654332 24567999999998 655554 4445789
Q ss_pred EEeCCCCceeee-ecC----CCCCeEEEEEecCCCEEEEEECC---------------CcEEEEECCCCeeEEEecccCC
Q 005096 212 YWQNNMNNVKAN-KSA----HKESVRDLSFCRTDLKFCSCSDD---------------TTVKVWDFARCQEERSLTGHGW 271 (715)
Q Consensus 212 iwd~~~~~~~~~-~~~----h~~~I~~l~~spd~~~Las~s~D---------------g~V~iwdl~~~~~~~~l~~~~~ 271 (715)
+||.+ ++.... ... ....+.++++.++++++++...+ +.|..||.. ++.... .....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCC
Confidence 99988 665433 221 12458899999999887776554 567777765 443332 22334
Q ss_pred ceEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCc-----eeEEeccCC-CceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 272 DVKSVDWH----PTKSLLVSG-GKDSLVKLWDAK-SGR-----ELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 272 ~I~si~~s----pdg~~L~sg-s~Dg~I~iwDl~-s~~-----~~~~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
....++|+ ++++.|+++ ..++.|.+||++ +++ ....+..+. ..+..++++++|+++++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 56889999 999766555 467899999986 443 222233333 568899999999988888788999999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCC
Q 005096 340 DIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 340 Dl~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~ 387 (715)
|.++++.+..+..+...+.++++++ +++ ++++...++.|.+|++...
T Consensus 253 d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred cCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 9987887777777778899999988 566 5566666789999998653
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=1.5e-14 Score=170.91 Aligned_cols=272 Identities=10% Similarity=0.013 Sum_probs=180.4
Q ss_pred CCCCEEEEEeCCC-----eEEEEeCC---CCceEEEEe------ccCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEe
Q 005096 154 PTGRRLITGSQSG-----EFTLWNGQ---SFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQ 214 (715)
Q Consensus 154 pdg~~Latgs~dg-----~I~Iwd~~---~~~~~~~l~------~h~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd 214 (715)
+||++++....++ .|++.+.. .++....+. .++..+..++||+||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 7888888665543 23444444 333333222 223368899999999999876543 3599999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCc--------------EEEEECCCCee--EEEecc--cCCceEEE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT--------------VKVWDFARCQE--ERSLTG--HGWDVKSV 276 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~--------------V~iwdl~~~~~--~~~l~~--~~~~I~si 276 (715)
+++++.+... .....+..++|++| +.|+.++.|+. |++|++.+... ...+.. +...+.++
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9998875431 12222467899999 99988887654 89999976652 223332 23358899
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeEEeccCCCceEEEEEcCCCCEEEEEECC----CeEEEEECCCC-
Q 005096 277 DWHPTKSLLVSGGKDS-----LVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDIRAM- 344 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg-----~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d----g~I~iwDl~t~- 344 (715)
.|++||++|++.+.++ .|++||+.++ ++...+..+...+.... +++++.|+..+.+ +.|.+||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999888877544 8999999876 41445544444455553 4889988887754 45999999874
Q ss_pred -eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-cCCCEEEEEEcCCCCEEE-EEE---C
Q 005096 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLC-SGS---N 418 (715)
Q Consensus 345 -~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~-sgs---~ 418 (715)
+....+..+...+..++|+ ++.++++...|+..+||.++........+.. ..+.|..+++++++..|+ +.+ .
T Consensus 353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3334444444556677876 5778889999998888766532333333332 356788999999886555 333 2
Q ss_pred CCeEEEEecCCC
Q 005096 419 DHTTKFWCRNRP 430 (715)
Q Consensus 419 Dg~I~iWdl~~~ 430 (715)
.++|++||+...
T Consensus 431 P~~i~~~d~~tg 442 (741)
T 1yr2_A 431 PATVLALDPATA 442 (741)
T ss_dssp EEEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 478999998653
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=5.9e-13 Score=137.51 Aligned_cols=239 Identities=6% Similarity=-0.040 Sum_probs=175.8
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee
Q 005096 184 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 184 ~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
.+...+.+++++++++++++...++.|.+||.. +...... ......+.++++.++++++++...++.|..||......
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 90 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIK 90 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEE
Confidence 345679999999999988777668899999988 5543322 23456799999999998887777788999999863222
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
...+......+.+++++++++++++...++.|.+||. +++.... .......+.+++++++++++++...++.|.+||.
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 2222234567899999999988887777889999998 5544332 2234467899999999987777767789999998
Q ss_pred CCCeEEEE-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 342 RAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 342 ~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+++.... +......+.++++++ +++++++...++.|.+||. ++.........+...+.+++++++|+++++...++
T Consensus 170 -~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 246 (299)
T 2z2n_A 170 -SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN 246 (299)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred -CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence 6655432 333456788999998 6777777767889999998 44422221223456799999999998777766789
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
.|.+|+.
T Consensus 247 ~i~~~d~ 253 (299)
T 2z2n_A 247 KIGRLTS 253 (299)
T ss_dssp EEEEEET
T ss_pred eEEEECC
Confidence 9999987
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=1.8e-13 Score=147.41 Aligned_cols=273 Identities=10% Similarity=0.013 Sum_probs=193.8
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeC
Q 005096 151 LWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQN 215 (715)
Q Consensus 151 ~~spdg~~Latgs~-----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~ 215 (715)
...|++++|++... ++.|.++|..+++.+..+..-... . +++++|+++|++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 44688998888876 679999999999999988865565 4 99999999887765 3678999999
Q ss_pred CCCceeeeecCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 216 NMNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 216 ~~~~~~~~~~~h-------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
.+.+.+..+... ...-..++|++|+++|+++.. ++.|.++|+.+.+.+.++..... ...+....+.++
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~ 193 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFF 193 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeE
Confidence 999887776432 124567999999999998874 68999999999999888854321 222333456777
Q ss_pred EEeCCCcEEEEECCC-CceeEEeccC----CCce-EEEEEc-CCCCEEEEEECCCeEEEEECCCCe--EEEEeec-----
Q 005096 287 SGGKDSLVKLWDAKS-GRELCSFHGH----KNMV-LCVKWN-QNGNWVLTASKDQIIKLYDIRAMK--ELESFRG----- 352 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s-~~~~~~~~~~----~~~I-~sl~~s-pdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~----- 352 (715)
+.+.||.+.+.++.+ ++.+...... ...+ ....|. ++|++++ .+.+|.|++.|+.+.. .+..+..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence 888899999999976 5543322111 1112 124564 5775544 5668999999997653 3333320
Q ss_pred -----CCCCeEEEEEccCCCCEEEEEeC---------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE
Q 005096 353 -----HRKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS 417 (715)
Q Consensus 353 -----h~~~V~~l~~sp~~~~~l~sgs~---------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs 417 (715)
.......++++++.++++++... .++|.++|..+.+.+.++..++ .++.|++++|++ +|+++.
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEE
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEc
Confidence 11234457778844444444321 2479999999988887776643 788999999986 666654
Q ss_pred -CCCeEEEEecCCCC
Q 005096 418 -NDHTTKFWCRNRPG 431 (715)
Q Consensus 418 -~Dg~I~iWdl~~~~ 431 (715)
.++.|.++|....+
T Consensus 351 ~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 351 TGDKTLYIHDAESGE 365 (386)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEECCCCc
Confidence 58999999987544
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=5e-14 Score=166.53 Aligned_cols=242 Identities=10% Similarity=-0.047 Sum_probs=168.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA-------- 209 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~-------- 209 (715)
|...+.+++|||||++||.++.+ ..|+|||+++++.+... .+...+..++|++| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578999999999999987654 36999999998876542 12222357899999 98888776554
Q ss_pred ------EEEEeCCCCce--eeee--cCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCCe-e-EEEecccCCc
Q 005096 210 ------IKYWQNNMNNV--KANK--SAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQ-E-ERSLTGHGWD 272 (715)
Q Consensus 210 ------I~iwd~~~~~~--~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~~-~-~~~l~~~~~~ 272 (715)
|++|++.++.. ...+ ..+...+..+.|++|+++|+..+.++ .|++||+.++. . ...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 88999877642 2222 22334588999999999988877543 89999998762 2 4455545545
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCe
Q 005096 273 VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMK 345 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~D----g~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~~ 345 (715)
+.... +++++.|++.+.+ +.|.+||++++ +....+..+...+..++|+ ++.++++...|+..+||.+. +++
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 55553 4788888887764 45999999874 3333444455567788887 56677788888887777554 466
Q ss_pred EEEEeec-CCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 346 ELESFRG-HRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 346 ~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
.+..+.. ....|..+++++++..++++.+. .++|++||+.++.
T Consensus 397 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6666654 35678899999955555555443 3689999997654
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=6e-13 Score=138.98 Aligned_cols=240 Identities=10% Similarity=0.065 Sum_probs=168.8
Q ss_pred CCCEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCceeeeec----CCCCCeEEEEEecC-CCEEEEEECCCcEE
Q 005096 186 DHAIRSMVWSHNDNWMVS-------GDDGGAIKYWQNNMNNVKANKS----AHKESVRDLSFCRT-DLKFCSCSDDTTVK 253 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~t-------gs~dg~I~iwd~~~~~~~~~~~----~h~~~I~~l~~spd-~~~Las~s~Dg~V~ 253 (715)
-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++ |++++.++.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEE
Confidence 345679999988888777 5678899999988776543322 24467899999998 55 44455455799
Q ss_pred EEECCCCeeEEE-ecc----cCCceEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeEEeccCCC
Q 005096 254 VWDFARCQEERS-LTG----HGWDVKSVDWHPTKSLLVSGGKD---------------SLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 254 iwdl~~~~~~~~-l~~----~~~~I~si~~spdg~~L~sgs~D---------------g~I~iwDl~s~~~~~~~~~~~~ 313 (715)
+||.+ ++.... ... ....+.+++++++++++++...+ +.|..||.+ ++..... ....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence 99988 654433 221 12458899999999887776654 567777766 5443322 2334
Q ss_pred ceEEEEEc----CCCCEEEEEE-CCCeEEEEECC-CCeE-----EEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 314 MVLCVKWN----QNGNWVLTAS-KDQIIKLYDIR-AMKE-----LESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 314 ~I~sl~~s----pdg~~Lasgs-~dg~I~iwDl~-t~~~-----~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
....++|+ ++++.|+++. .++.|.+||++ +++. +..+..+. ..+..+++++ +++++++...++.|.+
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEE
Confidence 56889999 9997666654 67899999986 4442 23333333 5688999998 7788888888899999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEE-EEEECCCeEEEEecCCCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L-~sgs~Dg~I~iWdl~~~~ 431 (715)
||.+++.....+ ..+...+.+++|+++++.| ++...++.|..|+++..+
T Consensus 252 ~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 252 FGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp ECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 998755544333 3455789999999999855 455566899999987543
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.57 E-value=2.7e-12 Score=134.10 Aligned_cols=230 Identities=9% Similarity=0.109 Sum_probs=160.5
Q ss_pred CCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+..-..+..|++++. ++++...++.|+.||..+++.. .+ .....+.+++++++++++++ . ++.|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3444567899999655 5556667889999999887653 23 24578999999999995554 4 56899999988765
Q ss_pred eeeecC----CCCCeEEEEEecCCCEEEEEECC---------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 221 KANKSA----HKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 221 ~~~~~~----h~~~I~~l~~spd~~~Las~s~D---------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
...... ....+++++++++++++++...+ ....||.+........+.......+.++|++|++.|++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 443322 22458899999999976654322 23455555432222333333445689999999987654
Q ss_pred -EeCCCcEEEEEC--CCCce-----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 288 -GGKDSLVKLWDA--KSGRE-----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 288 -gs~Dg~I~iwDl--~s~~~-----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
.+.++.|.+||+ .+++. +..+.........++++++|++.++...++.|.+||.++++.+..+......+++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~ 245 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS 245 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence 455788999987 45543 2222333456889999999988887778889999999999999999888888999
Q ss_pred EEEc-cCCCCEEEEEeC
Q 005096 360 LAWH-PFHEEYFVSGSL 375 (715)
Q Consensus 360 l~~s-p~~~~~l~sgs~ 375 (715)
++|. ++.+.++++...
T Consensus 246 ~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 246 CCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEESGGGCEEEEEEBC
T ss_pred EEEeCCCCCEEEEEcCC
Confidence 9998 644445555543
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.57 E-value=8e-13 Score=144.71 Aligned_cols=272 Identities=10% Similarity=0.041 Sum_probs=194.4
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCC
Q 005096 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMN 218 (715)
Q Consensus 154 pdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~~~ 218 (715)
+++++++++... +.|.++|..+.+.+..+..-... .+++++|+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466777766553 69999999999999998876666 899999999888776 4678999999999
Q ss_pred ceeeeecCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCC-CEEEEE
Q 005096 219 NVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSG 288 (715)
Q Consensus 219 ~~~~~~~~h-------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg-~~L~sg 288 (715)
+.+..+... ......+.|++|+++|+++.. ++.|.++|+.+.+.+..+..... ....+++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 887766432 234567899999999999875 57899999999998888764321 2233333 566777
Q ss_pred eCCCcEEEEECCCCceeEE----eccCCCc-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEeecC--------
Q 005096 289 GKDSLVKLWDAKSGRELCS----FHGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGH-------- 353 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~----~~~~~~~-I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~--~~~~~h-------- 353 (715)
+.||.+.+.|+.+++.... +...... ...+.|.++++.++..+.++.|.+.|+...... ..+...
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 7888888888866655432 1111111 123567889888888888999999999754421 111110
Q ss_pred --CCCeEEEEEccCCCCEEEEEeC---------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCC
Q 005096 354 --RKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDH 420 (715)
Q Consensus 354 --~~~V~~l~~sp~~~~~l~sgs~---------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg 420 (715)
......+++++++.+++++... ++.|.++|..+.+.+..+..+. ..+++.|++|++ +|++.. .++
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTT
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCC
Confidence 1112237889854555554431 3579999999988777765433 588999999998 888888 599
Q ss_pred eEEEEecCCCCCc
Q 005096 421 TTKFWCRNRPGDT 433 (715)
Q Consensus 421 ~I~iWdl~~~~~~ 433 (715)
.|.++|.......
T Consensus 394 ~VsVID~~t~kvv 406 (426)
T 3c75_H 394 TLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEETTTCCEE
T ss_pred eEEEEECCCCCEE
Confidence 9999999765443
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=1.5e-12 Score=142.76 Aligned_cols=234 Identities=9% Similarity=0.034 Sum_probs=168.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~ 222 (715)
.....|+|+++++++++...++.|++||.+++........... .. ++|++++++|++++.++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4688999999998777777789999999998877666555333 33 99999999998888766 78888877654433
Q ss_pred ee----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE----ecccCCce--EEEEEcCC-CCEEEEEeCC
Q 005096 223 NK----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS----LTGHGWDV--KSVDWHPT-KSLLVSGGKD 291 (715)
Q Consensus 223 ~~----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~----l~~~~~~I--~si~~spd-g~~L~sgs~D 291 (715)
.+ ......+.++++++++..|+++..++.|+.||..+...... ..+..... ..++|+++ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456788999999666666677788999999987654332 22222222 29999995 5555555667
Q ss_pred CcEEEEECCCCceeEEeccC---------------CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecC--
Q 005096 292 SLVKLWDAKSGRELCSFHGH---------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGH-- 353 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~---------------~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h-- 353 (715)
+.|+.||.+.. +..+.++ -.....++|+++++++++-. .++.|++||+.+++.. .+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCC
Confidence 88999997643 3333222 13478999999999777766 7889999998877643 33333
Q ss_pred -------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 354 -------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 354 -------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
-.....|++++ ++.++++-..+++|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 24578999998 5788888888888888765
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=1.4e-11 Score=127.15 Aligned_cols=237 Identities=6% Similarity=-0.067 Sum_probs=173.0
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~ 263 (715)
....+.++++.++++++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|.+||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 35678999999999988877778999999988 554432 22334678999999999877776668899999987 4443
Q ss_pred E-EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 264 R-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 264 ~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
. .+......+.+++++++++++++...++.|..||.+ ++.... +......+.+++++++++++++...++.|.+||.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 2 222234678999999999888777768899999987 554422 2334567899999999996666656789999998
Q ss_pred CCCeEEEE-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 342 RAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 342 ~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+++.... .......+.++++++ +++++++...++.|.+||. ++.............+.+++++++|+++++...++
T Consensus 175 -~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 175 -TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred -CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 4554432 223446789999998 6777777777778999998 33322222223456789999999998777766679
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
.|.+|+.
T Consensus 252 ~i~~~~~ 258 (300)
T 2qc5_A 252 QIGRITN 258 (300)
T ss_dssp EEEEECT
T ss_pred eEEEECC
Confidence 9999987
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=5e-12 Score=138.61 Aligned_cols=234 Identities=9% Similarity=0.045 Sum_probs=168.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeeEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--~V~iwdl~~~~~~~ 264 (715)
.....|+|+++++++++...++.|++||.+++.+....... .... ++|+++++.|+++..++ .|.+||........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999999987777777899999999988776555443 3334 99999999999988866 79999886654433
Q ss_pred Ee----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE----eccCCCce--EEEEEcCC-CCEEEEEECC
Q 005096 265 SL----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS----FHGHKNMV--LCVKWNQN-GNWVLTASKD 333 (715)
Q Consensus 265 ~l----~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~----~~~~~~~I--~sl~~spd-g~~Lasgs~d 333 (715)
.+ ......+.++++++++..|+++..++.|+.||.+++..... ..+..... ..++|+++ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456788999999666666677788999999987764332 22222222 28999995 4545555567
Q ss_pred CeEEEEECCCCeEEEEeecCC---------------CCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEeecc
Q 005096 334 QIIKLYDIRAMKELESFRGHR---------------KDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVH 397 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~---------------~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~~h 397 (715)
+.|+.||.... +..+.++. .....|++++ +++++++-. .+++|++|++.++.. ..+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v--~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYV--STVAGQ 363 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEE--EEEEEC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEE--EEEeCC
Confidence 89999997643 33333322 3478999999 677888877 889999999765542 222222
Q ss_pred ---------------CCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 398 ---------------DNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 398 ---------------~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
-.....|++++++.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246899999999988888888899998876
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.1e-11 Score=132.02 Aligned_cols=237 Identities=7% Similarity=-0.063 Sum_probs=168.6
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.++|++||++|+++. .++.|.+||..+.+.+..+... ...-..++|++|+++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776542 123458999999999998874 478
Q ss_pred EEEEeCCCCceeee-ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEec-----ccCCc-eEEEEEcCC
Q 005096 210 IKYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWD-VKSVDWHPT 281 (715)
Q Consensus 210 I~iwd~~~~~~~~~-~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~-I~si~~spd 281 (715)
|.++| .+++.+.. +... . ++.+.+++ ..+++.+.||.+.+||. +++.+.... ..... .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888766 4322 2 24444554 45677788999999999 776663322 11111 123456666
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--eeEEecc----------CCCceEEEEEcCCCCEEEEEEC----------CCeEEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLY 339 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~----------~~~~I~sl~~spdg~~Lasgs~----------dg~I~iw 339 (715)
+..++..+.++.|.+.|+.+.. .+..+.. .......+.+++|++.|+++.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6655555578899999997553 2222211 0122344789999998888653 3579999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEe-CCCcEEEEEcCCCCceEEE
Q 005096 340 DIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 340 Dl~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs-~DG~I~iwd~~~~~~~~~~ 393 (715)
|+.+++.+.++.. .....+++|++ +++ +++++. .++.|.+||..+.+.+..+
T Consensus 304 D~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 304 TGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999998863 44689999999 555 777776 5899999999888766553
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.52 E-value=1.8e-13 Score=147.86 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=137.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------eEE-EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---------FEM-ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~---------~~~-~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.++.++++++..+|++|+.++ ++||++++.+ ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 7779855433 111 2223556 999999 89999998 8899999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
.+.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+++| +++|..||+|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 877655566667778888877654 38899999999999998776643 34589999999999 77899999999
Q ss_pred EEECCCCce--eEEe------c---cCCCceEEEEEcCCCCEEEEE
Q 005096 296 LWDAKSGRE--LCSF------H---GHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 296 iwDl~s~~~--~~~~------~---~~~~~I~sl~~spdg~~Lasg 330 (715)
+|+.+.++. ..++ . +|...|.+|.|.+++.+|++=
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999887765 5555 2 367889999999999888763
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=2.5e-11 Score=126.68 Aligned_cols=231 Identities=7% Similarity=0.058 Sum_probs=157.2
Q ss_pred EeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 182 LQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 182 l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
+.....-..+..|+++++ ++++...++.|..||..++.... + .....+.+++++++++++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 333445567899998655 55666678999999998876532 2 24567999999999995544 4 568999999877
Q ss_pred eeEEEecc----cCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEE
Q 005096 261 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 261 ~~~~~l~~----~~~~I~si~~spdg~~L~sgs~D---------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
+....... ....+++++++++|+++++...+ ....||.+.....+..+.......+.++|++|++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 65433322 12457899999999966654321 233455444322233333334457899999999977
Q ss_pred EEE-ECCCeEEEEEC--CCCeE-----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 328 LTA-SKDQIIKLYDI--RAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 328 asg-s~dg~I~iwDl--~t~~~-----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
+++ +.++.|.+||+ .++.. +..+.........+++++ +++++++...++.|.+||.++++....+. .+..
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~ 241 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVD 241 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCC
Confidence 655 45789999997 45543 223333445688999998 67888888888899999987666554443 4556
Q ss_pred CEEEEEEc-CCCCEEEEEEC
Q 005096 400 TVWDLAWH-PIGYLLCSGSN 418 (715)
Q Consensus 400 ~V~~l~~s-pdg~~L~sgs~ 418 (715)
.+++++|. +|++.|++++.
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEeCCCCCEEEEEcC
Confidence 89999998 78777666554
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.51 E-value=1.7e-11 Score=129.96 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=155.0
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 146 SINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 146 ~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
-..+.+|++++. ++++...++.|.+||.++++... +. ....+.+++|+++++++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356789999755 45566678899999998775433 32 35689999999998877754 44 4999998887754332
Q ss_pred cC----CCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCc
Q 005096 225 SA----HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL 293 (715)
Q Consensus 225 ~~----h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~ 293 (715)
.. ....+.+++++++++++++... .+.|..+| +++.. .+.........++|++|++.|+++ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987665542 24566666 44433 332233456799999999877655 45688
Q ss_pred EEEEECC--CC-ce-----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc-c
Q 005096 294 VKLWDAK--SG-RE-----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-P 364 (715)
Q Consensus 294 I~iwDl~--s~-~~-----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s-p 364 (715)
|.+||++ ++ +. +..+.........++++.+|+++++...++.|.+||. +++.+..+......+++++|+ +
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 31 2223333456788999999987777767789999998 577778887777789999998 6
Q ss_pred CCCCEEEEEeCC
Q 005096 365 FHEEYFVSGSLD 376 (715)
Q Consensus 365 ~~~~~l~sgs~D 376 (715)
+.+.++++...+
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 334444554444
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=1.6e-12 Score=140.00 Aligned_cols=253 Identities=8% Similarity=-0.002 Sum_probs=174.7
Q ss_pred EEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccC-------CCEEEEEEcCCCCEEEEEeC--CCcE
Q 005096 150 VLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGAI 210 (715)
Q Consensus 150 l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~-------~~V~~l~~spdg~~L~tgs~--dg~I 210 (715)
+++++||++|++++ .++.|.+||..+.+.+..+.... ..-..++|++||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999998876 36789999999999988875422 23457899999999988864 6899
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEeccc----CCce-EEEEEc-CCCC
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGH----GWDV-KSVDWH-PTKS 283 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I-~si~~s-pdg~ 283 (715)
.|+|+.+++.+..+.... + ...+....+.+++.+.||++.++++.+ ++........ ...+ ...+|. ++|+
T Consensus 163 sVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~ 239 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 239 (386)
T ss_dssp EEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence 999999999888774322 1 233444556778888899999999876 4443221111 1122 124554 5665
Q ss_pred EEEEEeCCCcEEEEECCCCce--eEEecc----------CCCceEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005096 284 LLVSGGKDSLVKLWDAKSGRE--LCSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~--~~~~~~----------~~~~I~sl~~spdg~~Lasgs~----------dg~I~iwDl 341 (715)
+++ .+.+|.|+++|+.+... +..+.. ....+..++++++++.|++... .+.|.++|+
T Consensus 240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 444 66689999999976542 222210 1122345777899998888753 257999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
++++.+.++... ..+..|++++++..+|+++ ..++.|.++|..+.+.+..+.. .+.-+.|.+++|
T Consensus 319 ~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 319 KTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 999999888743 3688999999554466554 5589999999998876655543 223344555544
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=1.1e-12 Score=153.75 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=159.5
Q ss_pred cCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCc--------
Q 005096 185 HDHAIRSMVWSHNDNWMVSGD-----DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------- 251 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-------- 251 (715)
+...+..++||+|+++|+.+. .+..|+|||+++++.+... ........++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 445788899999999887432 2256999999998865431 111123578999 9999999887743
Q ss_pred -----EEEEECCCCee--EEEec--c-cCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eeEEeccCCCceE
Q 005096 252 -----VKVWDFARCQE--ERSLT--G-HGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR-ELCSFHGHKNMVL 316 (715)
Q Consensus 252 -----V~iwdl~~~~~--~~~l~--~-~~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~-~~~~~~~~~~~I~ 316 (715)
|++|++.+... ...+. . +...+.++.|++|+++|+.... ++.|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 99999976543 22222 2 3345788999999998765443 2589999998764 4455555555555
Q ss_pred EEEEcCCCCEEEEEEC-C---CeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCC
Q 005096 317 CVKWNQNGNWVLTASK-D---QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 388 (715)
Q Consensus 317 sl~~spdg~~Lasgs~-d---g~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~ 388 (715)
.. |+++++.|+..+. + +.|.++|+.++.. ...+..+...+. .|+++++.++++...++ .|++||++..
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 55 6666766665543 2 5799999987654 345555666655 77874444555555565 5788887643
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEECC----CeEEEEecCCC
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSND----HTTKFWCRNRP 430 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~~~ 430 (715)
....+.....+.+..+.+++++..|+....+ ++|..||++..
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 2333333345567788888887766655544 78888988643
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.50 E-value=1.3e-12 Score=153.13 Aligned_cols=241 Identities=9% Similarity=0.045 Sum_probs=162.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc-------
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~-----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~------- 209 (715)
+|...|..++|||||++||.+.. +.+|+|||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 46668999999999999985432 257999999999865431 111112567999 9999988877743
Q ss_pred ------EEEEeCCCCce----eeeecC-CCCCeEEEEEecCCCEEEEEEC----CCcEEEEECCCCe-eEEEecccCCce
Q 005096 210 ------IKYWQNNMNNV----KANKSA-HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQ-EERSLTGHGWDV 273 (715)
Q Consensus 210 ------I~iwd~~~~~~----~~~~~~-h~~~I~~l~~spd~~~Las~s~----Dg~V~iwdl~~~~-~~~~l~~~~~~I 273 (715)
|++|++.+... +..... +...+..+.|++|+++|+.... ++.|++||+.+.. ....+..+...+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999887542 222223 3445788999999998865443 3589999997653 344555555555
Q ss_pred EEEEEcCCCCEEEEEeC-C---CcEEEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCCC
Q 005096 274 KSVDWHPTKSLLVSGGK-D---SLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAM 344 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~-D---g~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t~ 344 (715)
... |+++++.|+..+. + +.|.++|+.++.. ...+..+...+. .|++++++|+....++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 554 5666665555443 3 5799999987654 344554555554 8888898888766544 6899998854
Q ss_pred eEEEEee-cCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005096 345 KELESFR-GHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHET 388 (715)
Q Consensus 345 ~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~ 388 (715)
....+. .....+..+.+++++..++++.+.. ++|+.||+.++.
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 444443 2445677778887555666655432 689999987654
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.49 E-value=5.2e-13 Score=142.70 Aligned_cols=265 Identities=11% Similarity=0.023 Sum_probs=175.1
Q ss_pred ccEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceEEEE-------eccCCCEEEEEEcCCCCEEEEEeC-----CCcE
Q 005096 145 CSINRVLWTPTGRRLITGSQ--SGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHNDNWMVSGDD-----GGAI 210 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~--dg~I~Iwd~~~~~~~~~l-------~~h~~~V~~l~~spdg~~L~tgs~-----dg~I 210 (715)
..+..|+++++|+++++... ++.++||.+.+++. ..+ ..+-..+..|+++++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 34355555544443 222 124467999999999876665433 5789
Q ss_pred EEEeCCCCceeeeecCC------CCCeEEEEEecCCCEEEEE-E---CCCcEEEEECCCCeeEEEecccCCceE-EEEEc
Q 005096 211 KYWQNNMNNVKANKSAH------KESVRDLSFCRTDLKFCSC-S---DDTTVKVWDFARCQEERSLTGHGWDVK-SVDWH 279 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h------~~~I~~l~~spd~~~Las~-s---~Dg~V~iwdl~~~~~~~~l~~~~~~I~-si~~s 279 (715)
.+||+.+++++..+... ...+..+++++++..++.+ . .++.|.+||+.+++..+.+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988866555322 2356899999765555444 4 578999999988877776654322110 13344
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC-eEEEEECC---CCe-----EEE--
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIR---AMK-----ELE-- 348 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg-~I~iwDl~---t~~-----~~~-- 348 (715)
.++..|.+.+.++.++.|. ..+..|+|++|+++|+++..++ .|..+|.. .+. ...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 4676777777777776553 2367899999999999888766 55555532 110 000
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...++......+++++ +++++++...++.|.+||..++.. ..+.. .+...+++++|.+++.++++.+..+.+.+|.
T Consensus 242 ~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 242 ERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1112344567899998 688999988899999999844432 22222 2245689999999998888877655554443
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.48 E-value=7.5e-11 Score=124.96 Aligned_cols=222 Identities=9% Similarity=-0.024 Sum_probs=151.0
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 188 AIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 188 ~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
...+.+|++++. ++++...++.|.+||.++++.... . ....+.+++|+++++++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-A-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-E-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 456788999755 556666788999999988765432 2 34679999999998876654 44 4999999877654332
Q ss_pred cc----cCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCe
Q 005096 267 TG----HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (715)
Q Consensus 267 ~~----~~~~I~si~~spdg~~L~sgs~------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~ 335 (715)
.. ....+.+++++++|+++++... .+.|..+| +++. ..+.........++|++|+++|+++. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999997665542 24566666 4443 33322334578999999999776654 5689
Q ss_pred EEEEECC--CC-e-----EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 336 IKLYDIR--AM-K-----ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 336 I~iwDl~--t~-~-----~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
|.+||+. ++ + .+..+.........+++++ +++++++...++.|.+||.+ +. ....+..+...+++++|+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~-~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GN-HIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CC-EEEEEECSCSBEEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-CC-EEEEEECCCCCcEEEEEe
Confidence 9999986 55 3 2223333345678899988 67777777777899999883 33 333344455679999998
Q ss_pred -CCCCEEEEEECC
Q 005096 408 -PIGYLLCSGSND 419 (715)
Q Consensus 408 -pdg~~L~sgs~D 419 (715)
+++..|++++..
T Consensus 280 g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 280 GPDASRLLVTSAR 292 (326)
T ss_dssp STTSCEEEEEEBC
T ss_pred cCCCCEEEEEecC
Confidence 787766655543
No 218
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.48 E-value=3e-11 Score=130.23 Aligned_cols=263 Identities=8% Similarity=-0.014 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC---------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD---------HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
+..|++++.++.|+.||.++++.+..+.... ..+.+.. .-++..|++++.++.|..+|.++++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5678888889999999999998877665432 2232222 22456788888999999999999988766654
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-----~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
.........+. +..+++++.++.|..+|.++++.+..+....... ...... +..+++++.++.|..+|.++
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 43322222232 4578888899999999999998877765432211 222232 45788888899999999999
Q ss_pred CceeEEeccCCCc----eE---EEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 302 GRELCSFHGHKNM----VL---CVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 302 ~~~~~~~~~~~~~----I~---sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
++.+..+...... +. .+...+ .+..|++++.++.|..+|.++++.+..... .....+.. .+..|++
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~---~~~~l~~ 282 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV---DGNRIYL 282 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE---ETTEEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE---ECCEEEE
Confidence 9988776532110 00 011111 356788888899999999999998877653 33445544 3567777
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
++.++.|..+|..+++............+...... +..|++++.+|.|.+||.+..
T Consensus 283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCC
Confidence 88899999999998887665542222233333333 567888999999999998653
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=8.9e-12 Score=130.57 Aligned_cols=224 Identities=9% Similarity=0.023 Sum_probs=156.5
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
........+|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.+ ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 445677899999998 5566677899999998 444 45555667789999999999977766666889999986 4433
Q ss_pred eeecC----CCCCeEEEEEecCCCEEEE----EEC-------------CCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 222 ANKSA----HKESVRDLSFCRTDLKFCS----CSD-------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 222 ~~~~~----h~~~I~~l~~spd~~~Las----~s~-------------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
..... ....+.++++.++++++++ +.. .+.|+.||..+++..... .......++|++
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp 197 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP 197 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC
Confidence 22211 1235678999999998876 321 246777887666544333 334568899999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeE---Ee-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 281 TKSLLVSGGKD------SLVKLWDAKSGRELC---SF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 281 dg~~L~sgs~D------g~I~iwDl~s~~~~~---~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
|++.|+++..+ +.|++||+..+. +. .+ .........++++++|++ .+++.+ .|.+||. +++.+..+
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEE
Confidence 99988877665 689999987554 21 11 112344567899999994 444444 5999998 57777777
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.... .+.+++|++ +++.|+.++.++
T Consensus 274 ~~~~-~~~~~~f~~-d~~~L~it~~~~ 298 (305)
T 3dr2_A 274 PTPG-TASNCTFDQ-AQQRLFITGGPC 298 (305)
T ss_dssp ECSS-CCCEEEECT-TSCEEEEEETTE
T ss_pred ECCC-ceeEEEEeC-CCCEEEEEcCCe
Confidence 7555 589999996 666666666554
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=7.4e-11 Score=127.10 Aligned_cols=257 Identities=13% Similarity=0.019 Sum_probs=176.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCe---
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I--- 231 (715)
++..|++++.++.|+.+|.++++.+................ +..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45578889999999999999999887766543322222222 4578888899999999999998777664432211
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCc----------e-EEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----------V-KSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 232 --~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~----------I-~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
....+. +..+++++.++.|..+|..+++.+......... + ....+ .+..+++++.++.|..+|
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEE
Confidence 122222 456888888999999999998887665432110 1 11111 256788888899999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.++++.+..... ....++.. ++..|++++.++.|..+|.++++.+..... ....+..... .+..|++++.+|
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g 328 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEG 328 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTS
T ss_pred CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCC
Confidence 999998877652 23444544 366788888999999999999998887763 2233333343 246788888999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCEE-EEEEcCCCCEEEEEECCCeEEEEec
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.|+++|.++++.+.+.... ...+. ..... +..|++++.||.|+.|+.
T Consensus 329 ~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~~--~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVD-SSGFQTEPVAA--DGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEEEETTTCCEEEEEECC-TTCBCSCCEEE--TTEEEEEBTTSCEEEEEC
T ss_pred eEEEEECCCCcEEEEEecC-CCcceeCCEEE--CCEEEEEeCCCEEEEEeC
Confidence 9999999888766555432 22222 22222 457888999999999873
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=3.8e-11 Score=125.76 Aligned_cols=234 Identities=7% Similarity=-0.074 Sum_probs=157.2
Q ss_pred EEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 179 EMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
+..+..........+|+++++ ++++...++.|..|+.. ++. ..+......+..++++++++++++...++.|.+||.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 333444456678899999998 55677778999999884 443 344455677899999999996666556688999998
Q ss_pred CCCeeEEEecc----cCCceEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEeccCCCceE
Q 005096 258 ARCQEERSLTG----HGWDVKSVDWHPTKSLLVS----GGK-------------DSLVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 258 ~~~~~~~~l~~----~~~~I~si~~spdg~~L~s----gs~-------------Dg~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
+ ++....... ....+.+++++++|+++++ +.. .+.|+.||.++++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 443322211 1234678999999998776 321 256888888766654433 344578
Q ss_pred EEEEcCCCCEEEEEECC------CeEEEEECCCCeE--EEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 317 CVKWNQNGNWVLTASKD------QIIKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d------g~I~iwDl~t~~~--~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.++|++|+++|+++... +.|++||+..... ...+ .........+++++ +++++++. .+ .|.+|+.+ +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~-g 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD-G 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-S
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-C
Confidence 89999999988887765 7899999876541 1111 11234456788888 66655443 44 48889874 3
Q ss_pred CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEE
Q 005096 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~ 423 (715)
+.. ..+.... .+.+++|+++++.|+.++.++..+
T Consensus 268 ~~~-~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLL-GHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEE-EEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEE-EEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 333 3333333 588999998888888888765433
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.43 E-value=1.7e-11 Score=143.07 Aligned_cols=270 Identities=10% Similarity=0.022 Sum_probs=189.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEecc-C----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH-D----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~ 222 (715)
++..|++++.|+.|+.+|.++++.+..+... . ..+.+ ... .+..+++++. ++.|+.||.++++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4568899999999999999999998888765 2 11211 111 2345555543 6899999999998877
Q ss_pred eecCCCCC--------------------------------eEEEEEecCCCEEEEEECCC-------------------c
Q 005096 223 NKSAHKES--------------------------------VRDLSFCRTDLKFCSCSDDT-------------------T 251 (715)
Q Consensus 223 ~~~~h~~~--------------------------------I~~l~~spd~~~Las~s~Dg-------------------~ 251 (715)
.+...... ...+++++++..|++++.++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 66432211 13577888888988887664 5
Q ss_pred EEEEECCCCeeEEEecccC---------CceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC-------
Q 005096 252 VKVWDFARCQEERSLTGHG---------WDVKSVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~---------~~I~si~~spdg---~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------- 312 (715)
|..+|.++++.+..+.... .....+....+| +.|++++.+|.|+++|.++++.+..+....
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 9999999999887765321 112223333366 688999999999999999999887664211
Q ss_pred ----Cce------------------------EEEEEcCCCCEEEEEECC-------------------------------
Q 005096 313 ----NMV------------------------LCVKWNQNGNWVLTASKD------------------------------- 333 (715)
Q Consensus 313 ----~~I------------------------~sl~~spdg~~Lasgs~d------------------------------- 333 (715)
..+ ..++|+++..+|++...+
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 011 146788888888876432
Q ss_pred ------------CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 334 ------------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 334 ------------g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
+.|..||+++++.+.++... ..+....+.. .+.++++++.||.|++||.++++.+..+...+....
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 78999999999999888743 3333444444 567788889999999999999998888776554444
Q ss_pred EEEEEcCCCCEEEEE-EC----------------CCeEEEEecC
Q 005096 402 WDLAWHPIGYLLCSG-SN----------------DHTTKFWCRN 428 (715)
Q Consensus 402 ~~l~~spdg~~L~sg-s~----------------Dg~I~iWdl~ 428 (715)
.-+.|..+|+.+++. +. .+.+.+|.+.
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 556666777644443 32 3678888886
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=2.6e-12 Score=138.81 Aligned_cols=172 Identities=10% Similarity=0.029 Sum_probs=135.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------eee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---------VKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---------~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
.++.+++++...+|++|+.++ +.||+++... ... ....+.. |..|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999875 5569854332 111 1223455 999999 88999998 8899999999
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEE
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
.+......+..+...+.++.+.+. .+++++.||.|.+||++++.... +...|+|++||++| +++|..||.|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 877666666667778888887754 38889999999999999877643 34579999999999 78899999999
Q ss_pred EEECCCCeE--EEEe------e---cCCCCeEEEEEccCCCCEEEEE
Q 005096 338 LYDIRAMKE--LESF------R---GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 338 iwDl~t~~~--~~~~------~---~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+|+....+. ..++ . .|...|.+|.|.+ ++.++++-
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 999988775 5556 2 3678899999998 67777654
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=1.9e-11 Score=133.82 Aligned_cols=239 Identities=6% Similarity=-0.002 Sum_probs=171.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.+++++|+++|+++. .++.|.++|..+++.+..+..- ......++|++|+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998886 3678999999999998887532 123457899999999998874 578
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEE----ecccCCc-eEEEEEcCCCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERS----LTGHGWD-VKSVDWHPTKS 283 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~----l~~~~~~-I~si~~spdg~ 283 (715)
|.++|+.+.+++..+..... ....++ ...+++.+.||++.+.++.+++.... +...... ...+.|.+++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 99999999998877654221 223333 35667778888888888865554422 1111111 12457788988
Q ss_pred EEEEEeCCCcEEEEECCCCcee--EEecc----------CCCceEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005096 284 LLVSGGKDSLVKLWDAKSGREL--CSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~--~~~~~----------~~~~I~sl~~spdg~~Lasgs~----------dg~I~iwDl 341 (715)
.++..+.++.|.+.|+.+.... ..+.. .......+++++++++|++... ++.|.++|+
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 8888888899999998754421 11110 0011223689999988887653 357999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEe-CCCcEEEEEcCCCCceEEE
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs-~DG~I~iwd~~~~~~~~~~ 393 (715)
.+.+.+.++... .....|+|++ +++ ++++.. .++.|.|+|..+.+.+..+
T Consensus 358 ~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 358 ETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999988643 2588999999 555 777776 5899999999988876665
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=1.8e-11 Score=143.19 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=182.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC----------E-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~----------V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.++.|+.+|.++++.+-.+...... + ..+++ ++..|++++.|+.|..+|.++++++..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557888888999999999999998887643221 0 11222 3568888999999999999999887766
Q ss_pred cCC--C---CCeEEEEEecCCCEEEEEE------CCCcEEEEECCCCeeEEEecccC-----------------------
Q 005096 225 SAH--K---ESVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG----------------------- 270 (715)
Q Consensus 225 ~~h--~---~~I~~l~~spd~~~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~----------------------- 270 (715)
... . ..+.+.-...++ .+++++ .++.|+.||.++++.+-.+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 442 1 111111111144 444443 36899999999999887664210
Q ss_pred --------CceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEecc--CC-------Cc
Q 005096 271 --------WDVKSVDWHPTKSLLVSGGKDSL-------------------VKLWDAKSGRELCSFHG--HK-------NM 314 (715)
Q Consensus 271 --------~~I~si~~spdg~~L~sgs~Dg~-------------------I~iwDl~s~~~~~~~~~--~~-------~~ 314 (715)
.....++++++.++|++++.++. |..||.++++.+..+.. +. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788888899999887763 99999999999988753 21 11
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEeecCCC------------------------------------
Q 005096 315 VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK------------------------------------ 355 (715)
Q Consensus 315 I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------------------------------------ 355 (715)
+....+..+|+ .|++++.+|.|+++|.++++.+........
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222223564 788999999999999999998854432110
Q ss_pred ---CeEEEEEccCCCCEEEEEeC---------------------------------------------CCcEEEEEcCCC
Q 005096 356 ---DVTALAWHPFHEEYFVSGSL---------------------------------------------DGSIFHWLVGHE 387 (715)
Q Consensus 356 ---~V~~l~~sp~~~~~l~sgs~---------------------------------------------DG~I~iwd~~~~ 387 (715)
.-..+++++ +..+|++... +|.|+.||+.++
T Consensus 387 Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 387 GAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp CSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred cccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 011267787 4455554421 377999999999
Q ss_pred CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.+.++.. ...+....+...+.+|++++.||.|+.||.++.+.
T Consensus 466 ~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 466 QAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CeEeEccC--CCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 87777654 22333445566788999999999999999976443
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.40 E-value=1.5e-11 Score=143.62 Aligned_cols=271 Identities=8% Similarity=0.049 Sum_probs=187.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCC-----------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----------AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.++.|+.+|.++++.+-.+..... ....+++ ++..|++++.|+.|..+|..+++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45788888889999999999998887764421 0122333 4678888899999999999999988777
Q ss_pred cCC-C----CCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCc---------------------
Q 005096 225 SAH-K----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD--------------------- 272 (715)
Q Consensus 225 ~~h-~----~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~--------------------- 272 (715)
... . ..+.+--.. .+..+++++. ++.|+.||.++++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 112211111 2345555543 689999999999988766532211
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEecc--CC-------C
Q 005096 273 -----------VKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------N 313 (715)
Q Consensus 273 -----------I~si~~spdg~~L~sgs~Dg-------------------~I~iwDl~s~~~~~~~~~--~~-------~ 313 (715)
...+++++++++|++++.++ .|..+|.++++.+..+.. +. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 13578888899888887664 499999999999887753 21 1
Q ss_pred ceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEeecCCCC-----------e----------------------
Q 005096 314 MVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKD-----------V---------------------- 357 (715)
Q Consensus 314 ~I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-----------V---------------------- 357 (715)
....+....+| +.|++++.+|.|+++|.++++.+..+...... +
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 12223333467 68899999999999999999998776532110 1
Q ss_pred --EEEEEccCCCCEEEEEeC-------------------------------------------CCcEEEEEcCCCCceEE
Q 005096 358 --TALAWHPFHEEYFVSGSL-------------------------------------------DGSIFHWLVGHETPQVE 392 (715)
Q Consensus 358 --~~l~~sp~~~~~l~sgs~-------------------------------------------DG~I~iwd~~~~~~~~~ 392 (715)
..+++++ +..++++... .|.|..||+.+++.+.+
T Consensus 394 ~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 394 NWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp CSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred CCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 1467888 4555555432 27899999999887776
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.. ...++...+..++.+|++++.||.|++||....+.
T Consensus 473 ~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 473 VEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 653 33455555666788899999999999999976443
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.37 E-value=2.6e-11 Score=127.38 Aligned_cols=267 Identities=11% Similarity=0.032 Sum_probs=179.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
...+.++.+..++. |++++.+ |..+|. +++....+......+....+. +..|++++.++.|..+|.+ ++....
T Consensus 59 ~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 59 EIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp GEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred CCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence 34467777777775 5555555 888886 554433333222222333333 5667788888999999988 766666
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.......+.++....++. |++++.++.|..||.. ++.+..+......+.++.+..++.+++ ++ +.|..|| .+++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT 205 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc
Confidence 555555667777766666 6667788999999998 777666665566777888877777444 44 7899999 7777
Q ss_pred eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.+..+......+.++.+..++. |.+++.++.|..+|. +++.+..+......+.++.+.. +..|..++.+|.|..+|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEEC
T ss_pred EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEEC
Confidence 7777765666788888887775 566777888888884 5777777665555555566643 44566778888899998
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
. ++...... ......+.++....++. |..++.+|.+++...+..
T Consensus 282 ~-~g~~~~~~-~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 282 P-DGTEKWNF-ETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp T-TSCEEEEE-ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred C-CCcEEEEE-EcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 5 44433333 33455677777777776 566889999999877543
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.36 E-value=6.6e-11 Score=138.33 Aligned_cols=257 Identities=9% Similarity=0.013 Sum_probs=175.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEecc-C-C---CEEE-EEEcCCCCEEEEEe------CCCcEEEEeCCCCceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH-D-H---AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-~-~---~V~~-l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~ 222 (715)
++..|++++.|+.|+.+|.++++.+..+... . . .+.+ ..+. ++ .+++++ .++.|+.||.++++++.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3567899999999999999999988777642 1 1 1111 1111 34 444443 36899999999998876
Q ss_pred eecCCC-------------------------------CCeEEEEEecCCCEEEEEECCCc-------------------E
Q 005096 223 NKSAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDTT-------------------V 252 (715)
Q Consensus 223 ~~~~h~-------------------------------~~I~~l~~spd~~~Las~s~Dg~-------------------V 252 (715)
.+.... .....+++++++.+|++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 654210 01125778888889999887764 9
Q ss_pred EEEECCCCeeEEEecccCC---------ceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC-Cce----
Q 005096 253 KVWDFARCQEERSLTGHGW---------DVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMV---- 315 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~---------~I~si~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-~~I---- 315 (715)
..||.++++.+-.+..... .+....+..+++ .|+.++.+|.|+++|.++++.+....... .+.
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999998877754211 111222222454 78889999999999999999875432111 000
Q ss_pred ----------------------------------EEEEEcCCCCEEEEEEC-----------------------------
Q 005096 316 ----------------------------------LCVKWNQNGNWVLTASK----------------------------- 332 (715)
Q Consensus 316 ----------------------------------~sl~~spdg~~Lasgs~----------------------------- 332 (715)
..++|+++..+|++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 12678888887777532
Q ss_pred ----------------CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec
Q 005096 333 ----------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (715)
Q Consensus 333 ----------------dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~ 396 (715)
+|.|+.||+++++.+.++..+.... .-.+.. .+.++++++.||.|+.||.++++.+.++...
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN-GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc-CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 3779999999999999887654332 223443 5778888999999999999999988887665
Q ss_pred cCCCEEEEEEcCCCCEEEE
Q 005096 397 HDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 397 h~~~V~~l~~spdg~~L~s 415 (715)
+.....-+.|..+|+.+++
T Consensus 516 ~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SCCCSCCEEEEETTEEEEE
T ss_pred CCcccCceEEEECCEEEEE
Confidence 4443445667778764433
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=1.8e-11 Score=131.71 Aligned_cols=250 Identities=10% Similarity=-0.071 Sum_probs=169.5
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceeeeecCC-------CC
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAH-------KE 229 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~ 229 (715)
+|.++|..+++.+..+..-... .+.+++|+++|+++. .++.|.+||..+.+.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999998876666 799999999998876 3688999999999988887543 13
Q ss_pred CeEEEEEecCCCEEEEEEC--CCcEEE--EECCCCeeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC---
Q 005096 230 SVRDLSFCRTDLKFCSCSD--DTTVKV--WDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKS--- 301 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s~--Dg~V~i--wdl~~~~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s--- 301 (715)
....+++++|+++|+++.. +..|.+ +|+.+ +..+.... . +.+.+++ ..+++.+.|+.+.+.|+++
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 4568999999999999875 467888 88876 33443211 1 1223444 3555667788888888886
Q ss_pred --CceeEE----eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCC----------CCeEEEEEc
Q 005096 302 --GRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHR----------KDVTALAWH 363 (715)
Q Consensus 302 --~~~~~~----~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--~~~~~~~~h~----------~~V~~l~~s 363 (715)
++.+.. +....... . ++++..++..+. +.|.+.|+.+. +.+..+.... .....++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 333211 11112233 3 556666666666 99999999753 2333332111 112226899
Q ss_pred cCCCCEEEEEe-C-------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCCeEEEEecCCCCC
Q 005096 364 PFHEEYFVSGS-L-------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRPGD 432 (715)
Q Consensus 364 p~~~~~l~sgs-~-------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg~I~iWdl~~~~~ 432 (715)
+++++++++.. . ++.+.++|..+.+.+..+..+. ..++|+|++|++ ++++.. .++.|.++|+...+.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 95455555444 2 2356699999887665555432 688999999987 566666 599999999976443
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=3.6e-13 Score=145.67 Aligned_cols=258 Identities=9% Similarity=-0.006 Sum_probs=145.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCC-CeE-
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE-SVR- 232 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~- 232 (715)
++.+|++++.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999888876 4455555556777888888999999999988877655443221 110
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 233 ~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
+..+. ++..|++++.|+.|+.||.++++.+..+..+. .+.+++++..|++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 01111 34567888889999999999998887766443 23455678889999999999999999998876664221
Q ss_pred CceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE----EEEeCCCcEEEEEcC
Q 005096 313 NMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF----VSGSLDGSIFHWLVG 385 (715)
Q Consensus 313 ~~I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l----~sgs~DG~I~iwd~~ 385 (715)
....+++.+. ..+++++.||.|+.||.++++.+.++......+....++. ++.+. +.+ ++.++++|..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~-dg~~~v~~~~~~--~~~l~~ld~~ 235 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR-EGLRKVMHINVA--VETLRYLTFM 235 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT-SSCEEECCEEEE--HHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC-CceEeccceeec--ccceeeeehh
Confidence 2233343332 5677888999999999999999888774333233333333 33221 111 3344555543
Q ss_pred CCC----ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 386 HET----PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 386 ~~~----~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+++ ...+.... +.+... .-.+..|++++.||.|+.++..
T Consensus 236 tG~~~~~~~W~~~~~--~~~~sp--~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 236 SGEVGRITKWKYPFP--KETEAK--SKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHTSCCCCC--CHHHHH--HHSEEEECBEECSSCEECCEEE
T ss_pred cCCcccceeeeeccC--cccccc--ccccceEEEecccCCEEecCcc
Confidence 333 22221111 111100 0124578888889999888775
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=1.8e-09 Score=117.15 Aligned_cols=221 Identities=10% Similarity=0.021 Sum_probs=148.7
Q ss_pred CCCCEEEE-EeCCCcEEEEeCCCC----ceeeeec-------CCCCCeEEEEEecCCCEEEEEECC------CcEEEEEC
Q 005096 196 HNDNWMVS-GDDGGAIKYWQNNMN----NVKANKS-------AHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDF 257 (715)
Q Consensus 196 pdg~~L~t-gs~dg~I~iwd~~~~----~~~~~~~-------~h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl 257 (715)
.++++|++ +..++.|.|+|+.+. ++..++. .....-..+.+++++ .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777754 567789999999765 4555442 111234567788999 66666555 78999999
Q ss_pred CCCeeEEEecccCC---ceEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeEEeccC-C-C
Q 005096 258 ARCQEERSLTGHGW---DVKSVDWHPTKSLLVSGG-------------------KDSLVKLWDAKSGRELCSFHGH-K-N 313 (715)
Q Consensus 258 ~~~~~~~~l~~~~~---~I~si~~spdg~~L~sgs-------------------~Dg~I~iwDl~s~~~~~~~~~~-~-~ 313 (715)
++.+.+..+..... .-..+.|+++++.+++.. .+.+|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999888863322 234688899999888874 3689999999998878777642 1 2
Q ss_pred ceEEEEE--cCCCCEEEEEEC------CCeEEEEECCCCeE--EEEe--ecC----------------CCCeEEEEEccC
Q 005096 314 MVLCVKW--NQNGNWVLTASK------DQIIKLYDIRAMKE--LESF--RGH----------------RKDVTALAWHPF 365 (715)
Q Consensus 314 ~I~sl~~--spdg~~Lasgs~------dg~I~iwDl~t~~~--~~~~--~~h----------------~~~V~~l~~sp~ 365 (715)
....|.| +++++++++++. +++|.+|..+.++. +..+ ... ......|.++++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3455655 999999888774 56888776654432 1111 110 245788999994
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccC-------------CCEEEEEEcCCCCEEEEEE
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHD-------------NTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~-------------~~V~~l~~spdg~~L~sgs 417 (715)
+..++++.-..+.|.+||+...... ..+..+-. +.-..+++++||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4444455556789999999643222 22222100 1247899999999999888
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.28 E-value=5.9e-09 Score=106.63 Aligned_cols=251 Identities=6% Similarity=-0.039 Sum_probs=160.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCce-----EEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCC
Q 005096 157 RRLITGSQSGEFTLWNGQSFNF-----EMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES 230 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~ 230 (715)
.+|+.+.. +.|+.++++.... ...+......+..++|+++++.|+.+ ..++.|.+++.+.......+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555554 4688888765432 12222223467899999876666554 45689999998876544433333357
Q ss_pred eEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeE
Q 005096 231 VRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELC 306 (715)
Q Consensus 231 I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~~~ 306 (715)
...+++++++..|+.+. .++.|.++|++.......+.........+++++++..|+++.. .+.|..++++......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 88999998766666554 4678999998654332223323356789999997666666554 3688888886433222
Q ss_pred EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 307 SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 307 ~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...........+++++++++|+++. ..+.|.++|+........+. .......|++. ++.++++...++.|.++|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 2222335678999999887776665 45799999997544333333 23445667653 45566666667899999998
Q ss_pred CCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 386 HETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
+++....+..+.......+++.+++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 77665555433222467777777754
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.26 E-value=7.2e-11 Score=123.99 Aligned_cols=258 Identities=13% Similarity=0.056 Sum_probs=172.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCC
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE 229 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 229 (715)
+.+..++ .|++++.++.|..|| .+++....+......+.++....++. |++++.+ |..+|. +++....+.....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 3444455 467777888899999 88877666555555567777776665 5555554 888885 5554444333333
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 230 SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+....+. +..|.+++.++.|..+|.+ ++....+......+.++....++. |++++.++.|..||.+ ++.+..+.
T Consensus 99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 99 IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp --CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence 33334443 5668888889999999988 666666655555667777777776 6667788999999998 87777776
Q ss_pred cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.....+.++.+..++.++ +++ +.|..|| .+++.+..+......+.++.... ++ .|..++.++.|..+|. ++..
T Consensus 174 ~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~ 246 (330)
T 3hxj_A 174 TNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTE 246 (330)
T ss_dssp CSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCE
T ss_pred cCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCE
Confidence 556667778887777744 444 7899999 78888877776667788888875 34 4555677788888874 3333
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
..... .....+.++.+..++ .|.+++.+|.|..+|.
T Consensus 247 ~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 247 KWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred eEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 33332 233334455665555 4667788888888874
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=139.55 Aligned_cols=204 Identities=11% Similarity=0.031 Sum_probs=118.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-ceE-
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVK- 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-~I~- 274 (715)
++..|++++.|+.|+.||..+++.+..+.. ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999998877765 4555555566777788888999999999988877655543211 111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
+..+. ++..|++++.|+.|+.||.++|+.+..+..+. .+.+++++..|++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34567888889999999999999888776443 23455688889999999999999999998877665321
Q ss_pred CCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE-EEEcCCCC
Q 005096 355 KDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGY 411 (715)
Q Consensus 355 ~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~ 411 (715)
....+++.+. +..+++++.||.|+.||.++++.+.+.. ....+.. ..++.++.
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGL 216 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSC
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCce
Confidence 1222222210 1556778899999999999887765544 2344433 34444554
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.1e-10 Score=125.66 Aligned_cols=244 Identities=9% Similarity=-0.054 Sum_probs=164.1
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccC-------CCEEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~-------~~V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.+++++|+++|+++. .++.|.+||..+++.+.++.... .....+++++|+++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999999886 36889999999999999986541 23568899999999998874 467
Q ss_pred EEE--EeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC-----CeeEEE----ecccCCceEEEE
Q 005096 210 IKY--WQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR-----CQEERS----LTGHGWDVKSVD 277 (715)
Q Consensus 210 I~i--wd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~-----~~~~~~----l~~~~~~I~si~ 277 (715)
|.+ +|..+ +..+... .. +.+.+++ ..+++.+.|+.+.+.|+++ ++.... +....... +
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~ 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q 218 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence 888 88876 2333211 11 1223333 4456667788888899876 333211 11112222 3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccC----------CCceEEEEEcCCCCEEEEEEC-C--------CeE
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH----------KNMVLCVKWNQNGNWVLTASK-D--------QII 336 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~----------~~~I~sl~~spdg~~Lasgs~-d--------g~I 336 (715)
++++..++..+. +.|.+.|+.+.. .+..+... ......++|++|+++|+++.. + +.+
T Consensus 219 -~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 219 -ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp -ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred -cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 556666666666 999999997542 22222110 011122789999998887643 2 356
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
.++|+.+.+.+.++.... ....|+|++++..++++.. .++.|.++|+.+.+.+..+.. ....+.+++.
T Consensus 297 ~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v--g~~P~~i~~~ 365 (368)
T 1mda_H 297 SSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL--DKGPESLSVQ 365 (368)
T ss_dssp EEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC--CSCCCEEECC
T ss_pred EEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC--CCCCCEEEee
Confidence 799999999988887443 6899999995556788888 699999999998876655443 2344555554
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=9.3e-09 Score=111.58 Aligned_cols=219 Identities=12% Similarity=0.063 Sum_probs=151.9
Q ss_pred CCCCEEEEE-eCCCeEEEEeCCCC----ceEEEEe------c-cCCCEEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 005096 154 PTGRRLITG-SQSGEFTLWNGQSF----NFEMILQ------A-HDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (715)
Q Consensus 154 pdg~~Latg-s~dg~I~Iwd~~~~----~~~~~l~------~-h~~~V~~l~~spdg~~L~tgs~d------g~I~iwd~ 215 (715)
.++++|++. ..+++|+|+|+.+. +.+++++ . -...-..+..++++ +++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788887765 55788999999765 6677763 1 11245667888999 66665554 78999999
Q ss_pred CCCceeeeecCCCC---CeEEEEEecCCCEEEEEE-------------------CCCcEEEEECCCCeeEEEecccC--C
Q 005096 216 NMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCS-------------------DDTTVKVWDFARCQEERSLTGHG--W 271 (715)
Q Consensus 216 ~~~~~~~~~~~h~~---~I~~l~~spd~~~Las~s-------------------~Dg~V~iwdl~~~~~~~~l~~~~--~ 271 (715)
++.+++..+..... .-..+.|+++++.+++.. .+.+|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99998888763322 234578899999888885 36899999999988887776431 2
Q ss_pred ceEEEEE--cCCCCEEEEEe------CCCcEEEEECCCCce--eEEe--ccC----------------CCceEEEEEcCC
Q 005096 272 DVKSVDW--HPTKSLLVSGG------KDSLVKLWDAKSGRE--LCSF--HGH----------------KNMVLCVKWNQN 323 (715)
Q Consensus 272 ~I~si~~--spdg~~L~sgs------~Dg~I~iwDl~s~~~--~~~~--~~~----------------~~~I~sl~~spd 323 (715)
....|.| +|+++++++++ .+++|.+|..+.++. +..+ ... ......|.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 99999888776 456787766554321 1111 110 244788999999
Q ss_pred CCEEEEEEC-CCeEEEEECC---CCeEEEEeecCCC--------------CeEEEEEccCCCCEEEEEe
Q 005096 324 GNWVLTASK-DQIIKLYDIR---AMKELESFRGHRK--------------DVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 324 g~~Lasgs~-dg~I~iwDl~---t~~~~~~~~~h~~--------------~V~~l~~sp~~~~~l~sgs 374 (715)
+++|+++.. .+.|.+||+. +.+.+..+..... .-..+++++ ++++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 999998875 6799999986 3455555543311 357899999 666666665
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=5e-10 Score=130.45 Aligned_cols=271 Identities=10% Similarity=0.079 Sum_probs=179.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC----------E-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~----------V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.++.|+.+|.++++.+-.+...... + ..+++ ++..|++++.|+.|..+|.++++++..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457888888999999999999988877543211 0 11233 3567888889999999999999887766
Q ss_pred cCCC----CCeEE-EEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccC-----------------------
Q 005096 225 SAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG----------------------- 270 (715)
Q Consensus 225 ~~h~----~~I~~-l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~----------------------- 270 (715)
.... ..+.+ ..+ .++ .+++++. ++.|+.||.++++.+-.+....
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 111 133 4555433 5899999999999887764210
Q ss_pred --------CceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEecc--CC-------Cc
Q 005096 271 --------WDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------NM 314 (715)
Q Consensus 271 --------~~I~si~~spdg~~L~sgs~Dg-------------------~I~iwDl~s~~~~~~~~~--~~-------~~ 314 (715)
.....++++++.+++++++.++ .|..+|.++++.+..+.. |. ..
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112478888888888887766 399999999999888763 21 22
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEeecCCC------------C-----------------------
Q 005096 315 VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK------------D----------------------- 356 (715)
Q Consensus 315 I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------------~----------------------- 356 (715)
.....+..+++ +|++++.+|.|+++|.++++.+..+..... .
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22233333665 688999999999999999998854432210 0
Q ss_pred -eEEEEEccCCCCEEEEE-----------------------------------eCCCcEEEEEcCCCCceEEEeeccCCC
Q 005096 357 -VTALAWHPFHEEYFVSG-----------------------------------SLDGSIFHWLVGHETPQVEIHNVHDNT 400 (715)
Q Consensus 357 -V~~l~~sp~~~~~l~sg-----------------------------------s~DG~I~iwd~~~~~~~~~~~~~h~~~ 400 (715)
-..++++++.+.+++.. ..+|.|..||..+++.+.+.... ..
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~ 459 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--TH 459 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SS
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CC
Confidence 01256676333333211 12478999999998877766542 23
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 401 VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+....+...+.+|++++.|+.|++||.+..+.
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 33334445678899999999999999865443
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=2.5e-10 Score=121.74 Aligned_cols=227 Identities=7% Similarity=-0.038 Sum_probs=153.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCCCEE-EEEe---C
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWM-VSGD---D 206 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~-----dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~L-~tgs---~ 206 (715)
.|...+.+|+|+++++++++-.. ++.|.+||+++++.+..+... ...+..+++++++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 56678999999999876555443 578999999999877776542 2346889999765555 4444 5
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeE-EEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVR-DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~-~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
++.|.+||+.+++....+..|..... ...+..++..+.+.+.++.++.|. ..+..|+|++|++.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999998887766644322111 134455777777777888776653 236789999999988
Q ss_pred EEEeCCC-cEEEEECC---CCc-----ee--EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-C
Q 005096 286 VSGGKDS-LVKLWDAK---SGR-----EL--CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-H 353 (715)
Q Consensus 286 ~sgs~Dg-~I~iwDl~---s~~-----~~--~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h 353 (715)
+++..++ .|..+|.. .+. .. ....++......++++++|+++++...++.|.+||.++++....... .
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 8887766 45555432 111 00 01112333456799999999888888899999999856764433332 2
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.....++++.+ ++.++++.+..+.+.+|.
T Consensus 290 ~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 290 LSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred eecCCeeEECC-CCcEEEEeCccccccccc
Confidence 45688999988 577777776555554443
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=1.3e-09 Score=122.13 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=182.3
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEec---------------------------------c------CCCEEEEEEcC---
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQA---------------------------------H------DHAIRSMVWSH--- 196 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~---------------------------------h------~~~V~~l~~sp--- 196 (715)
+.+|+..|.|+|+-+-+.+.++.+.. + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 45677788888887777766665410 0 12223355555
Q ss_pred --CCCEEEEEeC-CCcEEEEeCCCCceeeeecC-CCCCeEEEEE-e-cCCCEEEEEEC------------------CCcE
Q 005096 197 --NDNWMVSGDD-GGAIKYWQNNMNNVKANKSA-HKESVRDLSF-C-RTDLKFCSCSD------------------DTTV 252 (715)
Q Consensus 197 --dg~~L~tgs~-dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~-s-pd~~~Las~s~------------------Dg~V 252 (715)
||++|+++.. +..|.+.|+.+.++...+.. ....+..+++ + ++++++++++. ++.|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7888877655 46799999999987775543 2356888887 4 89999988852 4579
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--------------------------------------LV 294 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg--------------------------------------~I 294 (715)
.++|.++.+....+.... .-..++++++|+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999988888776433 456788999999999888653 36
Q ss_pred EEEECCC--Cce-eEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------EEEEeecCCCCeE
Q 005096 295 KLWDAKS--GRE-LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK------------ELESFRGHRKDVT 358 (715)
Q Consensus 295 ~iwDl~s--~~~-~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~------------~~~~~~~h~~~V~ 358 (715)
.+.|.++ ++. +..+. -.....++.++|||+++++++ .+.+|.++|+++.+ .+..+ .-.....
T Consensus 257 ~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred EEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence 6677776 444 33443 223467899999999888776 67799999998653 22222 2445688
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCC---------CceEEEeeccCCCE-----EEEEEcCCCCEEEEEEC---CCe
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQVEIHNVHDNTV-----WDLAWHPIGYLLCSGSN---DHT 421 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---------~~~~~~~~~h~~~V-----~~l~~spdg~~L~sgs~---Dg~ 421 (715)
.++|++ ++..+++...|+.|.+||+... ...+.....|-..- .++.+++||++|+++.. |..
T Consensus 335 h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 999999 4566777788999999999761 23333333333221 12245789999998865 332
Q ss_pred ----------EEEEecC
Q 005096 422 ----------TKFWCRN 428 (715)
Q Consensus 422 ----------I~iWdl~ 428 (715)
-.++|+.
T Consensus 414 ~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDIS 430 (595)
T ss_dssp CCCCSSCCEEEEEEECS
T ss_pred ccCCCCCCCcceEEEcC
Confidence 2788884
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=1.1e-08 Score=119.05 Aligned_cols=258 Identities=8% Similarity=0.049 Sum_probs=168.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+ .+..++++.. +|.|..+|.++++++..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5578889999999999999999887776531 11111 111 1345555543 589999999999887766
Q ss_pred cCCC-------------------------------CCeEEEEEecCCCEEEEEECCC-------------------cEEE
Q 005096 225 SAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDT-------------------TVKV 254 (715)
Q Consensus 225 ~~h~-------------------------------~~I~~l~~spd~~~Las~s~Dg-------------------~V~i 254 (715)
.... .....+++.++...++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 0112467888888888887766 3999
Q ss_pred EECCCCeeEEEeccc--C-------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC----------
Q 005096 255 WDFARCQEERSLTGH--G-------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------- 312 (715)
Q Consensus 255 wdl~~~~~~~~l~~~--~-------~~I~si~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---------- 312 (715)
+|.++++.+-.+... . ..+....+..+++ .|++++.+|.|+++|.++|+.+..+....
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999988777542 1 1222222223564 68889999999999999999875432111
Q ss_pred --Cce------------------------EEEEEcCCCCEEEEEE-----------------------------------
Q 005096 313 --NMV------------------------LCVKWNQNGNWVLTAS----------------------------------- 331 (715)
Q Consensus 313 --~~I------------------------~sl~~spdg~~Lasgs----------------------------------- 331 (715)
..+ ..++++++..++++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1256777766665421
Q ss_pred -CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 332 -KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 332 -~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
.+|.|..||+++++.+.++...... ....+.. .+.++++++.||.|++||.++++.+.++.........-+.+..+|
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~~-~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTHW-NGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CccceEEEEeCCCCcEEEEccCCCCC-cCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence 2378999999999999887754332 2222333 567888889999999999999988777665322111233444566
Q ss_pred C-EEEEEE
Q 005096 411 Y-LLCSGS 417 (715)
Q Consensus 411 ~-~L~sgs 417 (715)
+ ++++++
T Consensus 513 ~~yva~~~ 520 (668)
T 1kv9_A 513 RQYVAIMA 520 (668)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 444443
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.12 E-value=3.3e-08 Score=104.03 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=155.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-------------------cCCCEEEEEEcCCCCEEEEEe
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------------------HDHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-------------------h~~~V~~l~~spdg~~L~tgs 205 (715)
....+++|++++++|+++..++.|..||..+.+....... ....+..+++.+++..|++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4467788999998888888999999999876554332210 113578999997334555565
Q ss_pred CCCcEEEEeCCCCceeeeecC----CCCCeEEEEEec-CCCEEEEEEC-----------------CCcEEEEECCCCeeE
Q 005096 206 DGGAIKYWQNNMNNVKANKSA----HKESVRDLSFCR-TDLKFCSCSD-----------------DTTVKVWDFARCQEE 263 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~sp-d~~~Las~s~-----------------Dg~V~iwdl~~~~~~ 263 (715)
..+.|.++|..++........ .......+++.+ +++++++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 555688888775543222111 123578899999 8876665432 367888998766543
Q ss_pred EEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCEEEEEEC--------
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASK-------- 332 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~Lasgs~-------- 332 (715)
.... .......|+|++++++|+++ ..++.|.+||+.... ....+..... ...+++.++|+++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 3322 22345689999999866655 456889999987531 1222221223 788999999986666544
Q ss_pred --CCeEEEEECCCCeEEEEeecCC----CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 333 --DQIIKLYDIRAMKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 333 --dg~I~iwDl~t~~~~~~~~~h~----~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.+.|.++|.. ++.+..+.... ..++++++. +++++++...++.|.++++...
T Consensus 257 ~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 257 RVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred CCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 4678888874 77777776442 346677663 5667776667788999987543
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=5.2e-08 Score=99.45 Aligned_cols=194 Identities=7% Similarity=-0.016 Sum_probs=139.8
Q ss_pred ccEEEEEEcCCCCEEEEEe-C--CCeEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCc
Q 005096 145 CSINRVLWTPTGRRLITGS-Q--SGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-~--dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~ 219 (715)
.....++|++|+ .|+.++ . ++.|.++|..+++.+..+..... ....+++. ++.| ++.-.++.|.++|..+.+
T Consensus 21 ~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 21 AFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 446899999987 455443 2 57999999999999988764222 23355664 4455 555567999999999998
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.+..+..... ....+++|++.|+++..++.|.++|.++.+.+..+.... ..++.+.|. ++.+++....++.|
T Consensus 98 v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 98 NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 8887754311 123456688888877788999999999988887776322 236788888 67555555567899
Q ss_pred EEEECCCCceeEEeccC-------------CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCC
Q 005096 295 KLWDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM 344 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~-------------~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~ 344 (715)
.+.|.++++.+..+... ....+.|+|+++++.|++++ ..++|.+.|+...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999998887532 13568999999987666554 6778888887653
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.08 E-value=3.6e-07 Score=108.51 Aligned_cols=275 Identities=12% Similarity=0.097 Sum_probs=180.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...|.++....++. |.+++.++-|.+||..+.+....... ....|.++....++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 46788998888876 44555443499999887665443322 135699999988877555 4455 58889987
Q ss_pred CCceeeeec-------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec------ccCCceEEEEEcCCCC
Q 005096 217 MNNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDWHPTKS 283 (715)
Q Consensus 217 ~~~~~~~~~-------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~------~~~~~I~si~~spdg~ 283 (715)
++....... .....|.+|....++. |.+|+.++-|.+||..+........ .....|.++..+.+++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 776544321 1345799999988876 5557777779999875543222111 1245699999988876
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecc--------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee----
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---- 351 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~~--------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---- 351 (715)
|.+|+.++-|.+||.++++....... ....|.++....++++|.+|+.++-|.+||.++++......
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp -EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred -EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 55677777799999887654332211 23568999998888867778887889999998766433321
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee------ccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.....|.++.... ++.+++. +. +-|.+||..+.... .+.. .....|.++....++.+.+.. . +-|.+|
T Consensus 449 l~~~~v~~i~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~ 522 (795)
T 4a2l_A 449 LVNENVYAILPDG-EGNLWLG-TL-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVF 522 (795)
T ss_dssp CSCSCEEEEEECS-SSCEEEE-ES-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEE
T ss_pred cCCCeeEEEEECC-CCCEEEE-ec-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEE
Confidence 2345788888876 5555544 44 45888887654321 1111 123579999999888765544 4 457777
Q ss_pred ecCC
Q 005096 426 CRNR 429 (715)
Q Consensus 426 dl~~ 429 (715)
+.+.
T Consensus 523 ~~~~ 526 (795)
T 4a2l_A 523 KQEG 526 (795)
T ss_dssp EEET
T ss_pred eCCC
Confidence 7643
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.07 E-value=2.8e-08 Score=113.45 Aligned_cols=255 Identities=9% Similarity=0.029 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.|+.|..+|.++++.+..+.... ..+.+ .... + ..+++++. ++.|..+|.++++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888999999999999999887765322 01211 1111 3 45665554 789999999999887665
Q ss_pred cCCCCC--------------------------------------eEEEEEecCCCEEEEEECC----------------C
Q 005096 225 SAHKES--------------------------------------VRDLSFCRTDLKFCSCSDD----------------T 250 (715)
Q Consensus 225 ~~h~~~--------------------------------------I~~l~~spd~~~Las~s~D----------------g 250 (715)
...... ...+++.++...|+.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0135566666677766542 3
Q ss_pred cEEEEECCCCeeEEEecccCC------ceEE---EEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC------
Q 005096 251 TVKVWDFARCQEERSLTGHGW------DVKS---VDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK------ 312 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~l~~~~~------~I~s---i~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------ 312 (715)
.|..+|.++++.+-.+..... .+.. +....+|+ .|++++.+|.|+++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 599999999998877653211 1111 22223563 57788899999999999999887654221
Q ss_pred -------Cce--------------------------EEEEEcCCCCEEEEEE----------------------------
Q 005096 313 -------NMV--------------------------LCVKWNQNGNWVLTAS---------------------------- 331 (715)
Q Consensus 313 -------~~I--------------------------~sl~~spdg~~Lasgs---------------------------- 331 (715)
..+ ..++++++..+|++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2356788777777654
Q ss_pred ---------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE
Q 005096 332 ---------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (715)
Q Consensus 332 ---------~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~ 402 (715)
.++.|..||+++++.+.++..... +.+..+.. .+.++++++.||.|++||.++++.+.++.........
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 247899999999999888764332 22222222 4567777899999999999999888777654322222
Q ss_pred EEEEcCCCCEEE
Q 005096 403 DLAWHPIGYLLC 414 (715)
Q Consensus 403 ~l~~spdg~~L~ 414 (715)
-+.+..+|++++
T Consensus 511 p~~~~~~G~~yv 522 (571)
T 2ad6_A 511 PMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEETTEEEE
T ss_pred eEEEEECCEEEE
Confidence 233445665443
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.07 E-value=2.3e-08 Score=114.35 Aligned_cols=250 Identities=10% Similarity=0.001 Sum_probs=161.7
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCC----CEEE-EEEcCCCCEEEEEe------CCCcEEEEeCCCCceeeeecC
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----~V~~-l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~~~~~ 226 (715)
+|++++.|+.|+.+|.++++.+-....... .+.+ ..+. ++ .|++++ .++.|+.+|.++++++..+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 388889999999999999998877654320 1211 1111 33 555554 379999999999988766543
Q ss_pred CCCC-------------------------------------e-EEEEEecCCCEEEEEECC----------------CcE
Q 005096 227 HKES-------------------------------------V-RDLSFCRTDLKFCSCSDD----------------TTV 252 (715)
Q Consensus 227 h~~~-------------------------------------I-~~l~~spd~~~Las~s~D----------------g~V 252 (715)
.... + ..+++.++..+|+.++.+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2211 0 134566677778877765 379
Q ss_pred EEEECCCCeeEEEecccCCce---------EEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC-------
Q 005096 253 KVWDFARCQEERSLTGHGWDV---------KSVDWH-PTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I---------~si~~s-pdg---~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------- 312 (715)
..+|.++++.+-.+....... .-+... .+| +.|+.++.+|.|+++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999887765432211 112222 457 467778899999999999999887654211
Q ss_pred ------Cce--------------------------EEEEEcCCCCEEEEEE-----------------------------
Q 005096 313 ------NMV--------------------------LCVKWNQNGNWVLTAS----------------------------- 331 (715)
Q Consensus 313 ------~~I--------------------------~sl~~spdg~~Lasgs----------------------------- 331 (715)
..+ ..++++++..+|++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 011 1345666666555431
Q ss_pred ----------CCCeEEEEECCCCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC
Q 005096 332 ----------KDQIIKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (715)
Q Consensus 332 ----------~dg~I~iwDl~t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~ 400 (715)
.+|.|..||+++++.+.+.......... +.. .+.+++.++.||.|+.||.++++.+.+........
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 3478999999999998887632221112 222 46677779999999999999999888775433222
Q ss_pred EEEEEEcCCCCE
Q 005096 401 VWDLAWHPIGYL 412 (715)
Q Consensus 401 V~~l~~spdg~~ 412 (715)
..-+.|..+|+.
T Consensus 518 ~~P~~y~~~G~q 529 (599)
T 1w6s_A 518 GYPMTYTHKGTQ 529 (599)
T ss_dssp SCCEEEEETTEE
T ss_pred eccEEEEeCCEE
Confidence 233455556653
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.07 E-value=1.4e-08 Score=116.08 Aligned_cols=269 Identities=11% Similarity=0.070 Sum_probs=172.6
Q ss_pred CCEEEEEeC-CCeEEEEeC-CCCceEEEEeccCCC-----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDHA-----------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 156 g~~Latgs~-dg~I~Iwd~-~~~~~~~~l~~h~~~-----------V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
+..|++++. ++.|+.+|. ++++.+-.+...... ...+++ ++..|++++.|+.|..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446777777 889999999 899888776533210 011233 35678888889999999999998876
Q ss_pred eecCCCC----CeEE-EEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCc-------------------
Q 005096 223 NKSAHKE----SVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD------------------- 272 (715)
Q Consensus 223 ~~~~h~~----~I~~-l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~------------------- 272 (715)
....... .+.+ ..+. + ..+++++. ++.|+.+|.++++.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6543220 1211 1111 3 45555554 789999999999988766532211
Q ss_pred -------------------eEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeccCC--C--
Q 005096 273 -------------------VKSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGHK--N-- 313 (715)
Q Consensus 273 -------------------I~si~~spdg~~L~sgs~D----------------g~I~iwDl~s~~~~~~~~~~~--~-- 313 (715)
...++++++..+|+.+..+ +.|..+|.++++.+..+.... .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0235667766777776532 259999999999988775321 1
Q ss_pred -----ceEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEeecCC-------------CCe---------------
Q 005096 314 -----MVLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHR-------------KDV--------------- 357 (715)
Q Consensus 314 -----~I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------------~~V--------------- 357 (715)
...-+....+|+ .|++++.+|.|+++|.++++.+..+.... ..+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 111122223674 57788899999999999999987765322 011
Q ss_pred -----------EEEEEccCCCCEEEEEe-------------------------------------CCCcEEEEEcCCCCc
Q 005096 358 -----------TALAWHPFHEEYFVSGS-------------------------------------LDGSIFHWLVGHETP 389 (715)
Q Consensus 358 -----------~~l~~sp~~~~~l~sgs-------------------------------------~DG~I~iwd~~~~~~ 389 (715)
..++++++ ..+|++.+ .+|.|..||..+++.
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPE-SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp ESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred ECCCCccccCCCCceECCC-CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 23567773 34444332 357899999988887
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.+.... ..+....+...+.+|++++.||.|+.||.+..+
T Consensus 457 ~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 457 KWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 7666532 223333333346678889999999999986533
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=1.5e-07 Score=96.13 Aligned_cols=216 Identities=7% Similarity=-0.023 Sum_probs=144.7
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeee
Q 005096 146 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~ 223 (715)
.+.+++|+++++.|+.+. .++.|.+++.+.......+.........+++++++..|+.+ ..++.|.+++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 478999999776666555 56899999988765544443333578899999876666544 5567899999875443333
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDA 299 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl 299 (715)
..........+++++++..|+.+.. .+.|.+++++.................++++++++.|+++. ..+.|.++|+
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 3222356789999997777666654 36888888764332222222334678999999877665554 5678999999
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCC-CCeEEEEEcc
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-KDVTALAWHP 364 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp 364 (715)
+.......+.. ......+++. +..|+++. .++.|.++|..+++.+..+.... .....|++.+
T Consensus 197 ~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 197 AQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp TEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 85443333332 2334566664 45565555 56899999999999988886443 2467777776
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.07 E-value=2.4e-08 Score=114.31 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=173.2
Q ss_pred CCEEEEEeC-CCeEEEEeC-CCCceEEEEeccCCC-----------EEEEEEcCCCCE----EEEEeCCCcEEEEeCCCC
Q 005096 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDHA-----------IRSMVWSHNDNW----MVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 156 g~~Latgs~-dg~I~Iwd~-~~~~~~~~l~~h~~~-----------V~~l~~spdg~~----L~tgs~dg~I~iwd~~~~ 218 (715)
+..|++++. ++.|+-+|. ++++.+-.+...... ...+++++.+.. |++++.|+.|..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446777777 888999999 899888776543211 123455333333 788889999999999999
Q ss_pred ceeeeecCCCC----CeEE-EEEecCCCEEEEEE------CCCcEEEEECCCCeeEEEecccCCc---------------
Q 005096 219 NVKANKSAHKE----SVRD-LSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGWD--------------- 272 (715)
Q Consensus 219 ~~~~~~~~h~~----~I~~-l~~spd~~~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~~~--------------- 272 (715)
+.+........ .+.+ ..+ .++ .|++++ .++.|+.+|.++++.+-.+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 88766543220 1221 112 144 455554 3799999999999988766532211
Q ss_pred ----------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeccCCC
Q 005096 273 ----------------------V-KSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 273 ----------------------I-~si~~spdg~~L~sgs~D----------------g~I~iwDl~s~~~~~~~~~~~~ 313 (715)
+ ..++++++..+|+.+..+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 135666777788877765 3799999999999887754321
Q ss_pred ---------ceEEEEEc-CCC---CEEEEEECCCeEEEEECCCCeEEEEeecCC-------------CCe----------
Q 005096 314 ---------MVLCVKWN-QNG---NWVLTASKDQIIKLYDIRAMKELESFRGHR-------------KDV---------- 357 (715)
Q Consensus 314 ---------~I~sl~~s-pdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------------~~V---------- 357 (715)
...-+... .+| +.|+.++.+|.|+++|.++++.+..+.... ..+
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 11112222 467 467778899999999999999987765221 001
Q ss_pred ----------------EEEEEccCCCCEEEEE---------------------------------e------CCCcEEEE
Q 005096 358 ----------------TALAWHPFHEEYFVSG---------------------------------S------LDGSIFHW 382 (715)
Q Consensus 358 ----------------~~l~~sp~~~~~l~sg---------------------------------s------~DG~I~iw 382 (715)
..++++|+ ..++++. + .+|.|..|
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPK-RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCccEeccCcccccCCCCccCCCC-CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 13455552 3333221 1 34788899
Q ss_pred EcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 383 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|+.+++.+.+..... .+..-.+...+.+|++++.||.|+.||.+..+.
T Consensus 459 D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 459 NAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 998888776664321 222111223466788899999999999976443
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=2.5e-08 Score=101.88 Aligned_cols=204 Identities=13% Similarity=0.074 Sum_probs=144.2
Q ss_pred eEEEEeccCC--CEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeeecCCCC-CeEEEEEecCCCEEEEEE-CCCc
Q 005096 178 FEMILQAHDH--AIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHKE-SVRDLSFCRTDLKFCSCS-DDTT 251 (715)
Q Consensus 178 ~~~~l~~h~~--~V~~l~~spdg~~L~tgs~--dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~spd~~~Las~s-~Dg~ 251 (715)
.+.++. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+..... ....+++. ++.|+.++ .++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 445553 443 3689999988644444443 58999999999998887643222 23345554 55555555 5789
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCE
Q 005096 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNW 326 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~ 326 (715)
|.++|..+.+.+..+......-.. +++|++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. ++..
T Consensus 88 v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999998888633122223 44467777777778999999999988887775321 236788888 6754
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeecC-------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 327 VLTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~~~~~~h-------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
++....++.|.+.|..+++.+..+... ....+.|+|+++++++++++...+.|.+.++...
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 444446789999999999998888642 1356899999977778888888889988887543
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.04 E-value=7.4e-07 Score=105.85 Aligned_cols=273 Identities=13% Similarity=0.103 Sum_probs=180.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...|.++....+|. |.+|+.+| |.+||..+.+....... ....|.++....+++ |.+|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 45799999998887 44555555 89999887765543321 235799999988876 4556777778888866
Q ss_pred CCceeeeec------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc--------cCCceEEEEEcCCC
Q 005096 217 MNNVKANKS------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------HGWDVKSVDWHPTK 282 (715)
Q Consensus 217 ~~~~~~~~~------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~--------~~~~I~si~~spdg 282 (715)
+........ .....|.++....+++ |.+|+.++-|.+||..+.+....... ....|.+++.+.++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 554332211 1245689998887776 55577777799999876654332211 23578999998888
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEec----cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee------c
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSFH----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------G 352 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~~----~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~------~ 352 (715)
++|.+|+.++-|.+||.++++...... .....|.++....++++.+ |+. +-|.+||..+++...... .
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcccccccccc
Confidence 867778887789999998776433221 1345799999988887544 444 458889988765433221 1
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe------eccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~------~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
....|.++.... ++.+.+.. . +-|.+||..+... .+. ......|.++....+|.+.++ +.+ -|..||
T Consensus 496 ~~~~i~~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d 568 (795)
T 4a2l_A 496 VSKQITTLFRDS-HKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFN 568 (795)
T ss_dssp CCCCEEEEEECT-TCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEE
T ss_pred CCceEEEEEECC-CCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeEC
Confidence 235688888876 55555544 4 4588888765543 221 123457999999988886554 444 567777
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
.+.
T Consensus 569 ~~~ 571 (795)
T 4a2l_A 569 EKD 571 (795)
T ss_dssp TTT
T ss_pred CCC
Confidence 643
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=1e-08 Score=114.98 Aligned_cols=229 Identities=13% Similarity=0.053 Sum_probs=161.2
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceEEEEecc-CCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 005096 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVW-S-HNDNWMVSGD------------------DGGAIKY 212 (715)
Q Consensus 155 dg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~-s-pdg~~L~tgs------------------~dg~I~i 212 (715)
||++|+++.. ++.|.+.|+++.++.+++..- ......+++ + ++++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888887766 457999999999988877543 356889998 5 8999998884 3457999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--------------------------------------cEEE
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--------------------------------------TVKV 254 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--------------------------------------~V~i 254 (715)
+|.++.+....+.... .-..++++++++++++++.+. .|.|
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999988877775433 456788999999998888653 3666
Q ss_pred EECCC--Cee-EEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eeEEeccCCCceEEE
Q 005096 255 WDFAR--CQE-ERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGR------------ELCSFHGHKNMVLCV 318 (715)
Q Consensus 255 wdl~~--~~~-~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~------------~~~~~~~~~~~I~sl 318 (715)
.|..+ ++. +..+. ......++.++|||+++++++ .+.+|.++|+++.+ .+..+. -......+
T Consensus 259 ID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 66665 333 33333 223566899999999877765 57889999998653 222232 34557899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCC----------CeEEEEeecCCCCe-----EEEEEccCCCCEEEEEeCC--CcE--
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRA----------MKELESFRGHRKDV-----TALAWHPFHEEYFVSGSLD--GSI-- 379 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t----------~~~~~~~~~h~~~V-----~~l~~sp~~~~~l~sgs~D--G~I-- 379 (715)
+|+++|...++...|+.|.+||+.+ .+.+.++..|-..- ..+.+++ ++++|++...- .++
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCcccccc
Confidence 9999994444566899999999977 55677776554321 1224466 77887777532 233
Q ss_pred ---------EEEEcCCC
Q 005096 380 ---------FHWLVGHE 387 (715)
Q Consensus 380 ---------~iwd~~~~ 387 (715)
.++|+..+
T Consensus 416 ~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCSSCCEEEEEEECSSS
T ss_pred CCCCCCCcceEEEcCCC
Confidence 77888443
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.03 E-value=1.7e-07 Score=107.18 Aligned_cols=255 Identities=10% Similarity=0.054 Sum_probs=162.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCC----CEE-EEEEcC---CCC-EEEEEe------CCCcEEEEeCCCCce
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIR-SMVWSH---NDN-WMVSGD------DGGAIKYWQNNMNNV 220 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----~V~-~l~~sp---dg~-~L~tgs------~dg~I~iwd~~~~~~ 220 (715)
+..|++++.|+.|+.+|.++++.+-....... .+. ...+.. +++ .|++++ .++.|..+|.+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55788899999999999999998877654321 111 111111 233 566654 378999999999887
Q ss_pred eeeecCCCCCe-----------------------------------------EEEEEecCCCEEEEEEC-----------
Q 005096 221 KANKSAHKESV-----------------------------------------RDLSFCRTDLKFCSCSD----------- 248 (715)
Q Consensus 221 ~~~~~~h~~~I-----------------------------------------~~l~~spd~~~Las~s~----------- 248 (715)
+.........+ ..+++.++..+|++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 76543211000 12455666677777663
Q ss_pred ---------C----CcEEEEECCCCeeEEEecc--cCC----ceE---EEEEc-CCCC---EEEEEeCCCcEEEEECCCC
Q 005096 249 ---------D----TTVKVWDFARCQEERSLTG--HGW----DVK---SVDWH-PTKS---LLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 249 ---------D----g~V~iwdl~~~~~~~~l~~--~~~----~I~---si~~s-pdg~---~L~sgs~Dg~I~iwDl~s~ 302 (715)
| +.|..+|.++++.+-.+.. |.. .+. -+... .+|+ .|+.++.+|.|+++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5899999999998877653 210 111 12221 4564 7888999999999999999
Q ss_pred ceeEEeccCC--Cce-------------------------------------------EEEEEcCCCCEEEEEE------
Q 005096 303 RELCSFHGHK--NMV-------------------------------------------LCVKWNQNGNWVLTAS------ 331 (715)
Q Consensus 303 ~~~~~~~~~~--~~I-------------------------------------------~sl~~spdg~~Lasgs------ 331 (715)
+.+..+.... ... ..++++++..+|++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9887654321 000 1245566555555432
Q ss_pred ---------------------------CCCeEEEEECCCCeEEEEeecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 332 ---------------------------KDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 332 ---------------------------~dg~I~iwDl~t~~~~~~~~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.+|.|..||+++++.+.++........ .+.. .+.++++++.||.|+.||
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---agglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT---AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE---TTTEEEEECTTSEEEEEE
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe---CCCEEEEECCCCcEEEEE
Confidence 257899999999999888764332211 1222 466777899999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
.++++.+.++.........-+.|..+|+..
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 999998887765332222235566677533
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.01 E-value=8.2e-08 Score=101.00 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=147.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC-------------------CCCCeEEEEEecCCCEEEEEEC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-------------------HKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~-------------------h~~~I~~l~~spd~~~Las~s~ 248 (715)
...+++|++++++|+++..++.|..|+..++........ ....+..|++.+++..|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 455788998988788888899999998876544322110 1135788999874445666666
Q ss_pred CCcEEEEECCCCeeEEEecc-----cCCceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcee
Q 005096 249 DTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHP-TKSLLVSGGK-----------------DSLVKLWDAKSGREL 305 (715)
Q Consensus 249 Dg~V~iwdl~~~~~~~~l~~-----~~~~I~si~~sp-dg~~L~sgs~-----------------Dg~I~iwDl~s~~~~ 305 (715)
.+.|.++|..+++. ..+.. .......+++++ +|+++++... ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66688888765432 22211 123468899999 8886665432 367888998766543
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe--EEEEeecCCCCeEEEEEccCCCCEEEEEeC-------
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFHEEYFVSGSL------- 375 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~--~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~------- 375 (715)
.... .......|+|++++++|+++. .++.|.+||+.... ....+..... ...+++.+ +++++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTT
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCccccccc
Confidence 3222 223456799999999777664 56899999987421 1112211223 78899988 5666666544
Q ss_pred ---CCcEEEEEcCCCCceEEEeecc----CCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 376 ---DGSIFHWLVGHETPQVEIHNVH----DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 376 ---DG~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+.|.++|.+ ......+... ...++++++. ++.++++...++.|.+++++.
T Consensus 256 ~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 3567777653 3333333222 2356677763 566666666788999998754
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.01 E-value=1.2e-07 Score=108.48 Aligned_cols=273 Identities=11% Similarity=0.042 Sum_probs=171.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC---------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA---------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~---------V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
+..|++++.++.|+.+|.++++.+-.+...... ...+++ .+..|++++.|+.|.-+|.++++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 345666666455999999999988777644321 012222 356788888999999999999988766543
Q ss_pred CCC----CeE-EEEEecC---CC-EEEEEE------CCCcEEEEECCCCeeEEEecccCCc-------------------
Q 005096 227 HKE----SVR-DLSFCRT---DL-KFCSCS------DDTTVKVWDFARCQEERSLTGHGWD------------------- 272 (715)
Q Consensus 227 h~~----~I~-~l~~spd---~~-~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~~~------------------- 272 (715)
... .+. ...+..+ ++ .|++++ .++.|+.+|.++++.+-........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 1112212 23 555554 3789999999998887654321100
Q ss_pred ----------------------eEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeE
Q 005096 273 ----------------------VKSVDWHPTKSLLVSGGK--------------------D----SLVKLWDAKSGRELC 306 (715)
Q Consensus 273 ----------------------I~si~~spdg~~L~sgs~--------------------D----g~I~iwDl~s~~~~~ 306 (715)
-..++++++..+|+++.. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 013566677777777663 2 579999999999998
Q ss_pred Eecc--CCC-------ceEEEEEc-CCCC---EEEEEECCCeEEEEECCCCeEEEEeecCCC--Ce--------------
Q 005096 307 SFHG--HKN-------MVLCVKWN-QNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK--DV-------------- 357 (715)
Q Consensus 307 ~~~~--~~~-------~I~sl~~s-pdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~--~V-------------- 357 (715)
.+.. |.. ...-+... .+|+ .|+.++.+|.|+++|.++++.+..+..... ..
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 8753 211 11112221 4664 788899999999999999999877654320 00
Q ss_pred -----------------------------EEEEEccCCCCEEEEEe--------------------------------CC
Q 005096 358 -----------------------------TALAWHPFHEEYFVSGS--------------------------------LD 376 (715)
Q Consensus 358 -----------------------------~~l~~sp~~~~~l~sgs--------------------------------~D 376 (715)
..+++++..+.+++... .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 12455663344433221 25
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|.|..||..+++.+.+..... .+..-.....+.+|++++.||.|+.||.+..+.
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 789999999988777665422 222212222466788899999999999865443
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.00 E-value=3.3e-08 Score=99.95 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=132.2
Q ss_pred eEEEEeccCCC--EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcE
Q 005096 178 FEMILQAHDHA--IRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTV 252 (715)
Q Consensus 178 ~~~~l~~h~~~--V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V 252 (715)
.+.++ .|+.. ...|.|+ ++.++++++.+| .|+++|+++++.+..+... .......+..+++.|+... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 44555 34433 4788888 666666666665 8999999999988877543 3343333333455666555 48899
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCEE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWV 327 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~L 327 (715)
.+||.++.+.+.++.... .-..++ .|++.|+.+..++.|.++|.++.+.+.++.... ..++.+.|. +|++.
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999999999998887533 223444 457777777667889999999998887765321 335567776 67655
Q ss_pred EEEECCCeEEEEECCCCeEEEEeecC------------CCCeEEEEEccCCCCEEEEE
Q 005096 328 LTASKDQIIKLYDIRAMKELESFRGH------------RKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~~~~~~~h------------~~~V~~l~~sp~~~~~l~sg 373 (715)
+..-.++.|.+.|.++++.+..+... ....+.|+|+++.++++++|
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 55546889999999999998887642 23568999999656666655
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.97 E-value=1.1e-07 Score=96.19 Aligned_cols=182 Identities=8% Similarity=0.077 Sum_probs=131.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg--~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~ 219 (715)
+.-...|.|+ ++.++++.+.+| .|+++|+++++.+..+...... -..+++ +++.|+ +.-.++.+.+||.++.+
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc
Confidence 3445788898 676666666665 8999999999999888754322 123444 344554 44568999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.+.++.... ....++.|++.|+.+..++.|.++|.++.+.+..+.... ..++.+.|. +|++++..-.++.|
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence 888876533 223444577777777778889999999988888765421 335567887 67666555568899
Q ss_pred EEEECCCCceeEEeccC------------CCceEEEEEcCCCCEEEEEEC
Q 005096 295 KLWDAKSGRELCSFHGH------------KNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~------------~~~I~sl~~spdg~~Lasgs~ 332 (715)
.+.|.++++.+..+... ....+.|+|+++++.|++.+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999998877531 135689999999888887774
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.96 E-value=6.9e-08 Score=97.57 Aligned_cols=177 Identities=10% Similarity=0.096 Sum_probs=129.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEE--EEEecCCCEEEE-EECCCcEEEEECCCCeeEEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD--LSFCRTDLKFCS-CSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~--l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...|.|+ ++.++++.+.+|.|+++|+++++.+..+ ....... +++ +++.|+. .-.++.+.+||.++.+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 5678887 4566677888899999999999988777 3334333 444 4444444 44588999999999999998
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+.... .-..+++ |++.|+.+..++.|.++|.++.+.+.++.-.. ..++.+.|. +|++++....+..|.+.|
T Consensus 132 i~~~~-eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRYSG-EGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EECSS-CCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EeCCC-ceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 87533 2244554 57888888778999999999998888775322 245677877 776554444688999999
Q ss_pred CCCCeEEEEeecC-------------CCCeEEEEEccCCCCEEEEEe
Q 005096 341 IRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 341 l~t~~~~~~~~~h-------------~~~V~~l~~sp~~~~~l~sgs 374 (715)
.++++.+..+... ....+.|++++..+++++||-
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999998887632 235789999997777777763
No 258
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.94 E-value=6.6e-08 Score=114.15 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=116.6
Q ss_pred CEEEEEEc-CCCCEEEEEe-CCC----cEEEEeCCCC-ceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEE
Q 005096 188 AIRSMVWS-HNDNWMVSGD-DGG----AIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVW 255 (715)
Q Consensus 188 ~V~~l~~s-pdg~~L~tgs-~dg----~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iw 255 (715)
.+...+|| +||++|+.+. .+| .|+++|++++ +.+.. ........++|++|++.|+....| ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 9999887543 333 4999999988 63211 011124568999999888777665 368888
Q ss_pred ECCCCee--EEEec-ccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--EEec-cCCCceEEEEEcCCCC
Q 005096 256 DFARCQE--ERSLT-GHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGR-EL--CSFH-GHKNMVLCVKWNQNGN 325 (715)
Q Consensus 256 dl~~~~~--~~~l~-~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~-~~--~~~~-~~~~~I~sl~~spdg~ 325 (715)
++.+... ...+. ........+.|++|+++|+..+. ...|+++|+.++. .. ..+. .......++.|+. ++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~ 331 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS 331 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence 9876532 22322 22334668899999998887653 3468889998752 22 3333 2344456666654 55
Q ss_pred EEEEEE-CC----CeEEEEECCCCeEEEE-eecCCC--CeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 326 WVLTAS-KD----QIIKLYDIRAMKELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 326 ~Lasgs-~d----g~I~iwDl~t~~~~~~-~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
.|+..+ .+ ..|.++|+.+...... +..+.. .+..+.+. ++.++++...++..+||
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 555444 33 3677778765322222 223333 34555554 56677778888865544
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.91 E-value=1.4e-06 Score=90.96 Aligned_cols=226 Identities=11% Similarity=0.058 Sum_probs=141.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeeEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--~V~iwdl~~~~~~~ 264 (715)
.....++|+++++++++...++.|..||.+.. ....+ ........+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 46778999999987777667899999987754 32222 2345688999999998666554432 47777777766543
Q ss_pred Eecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEec---------cCCCceEEEEEcCCCCEEEEEE-C
Q 005096 265 SLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFH---------GHKNMVLCVKWNQNGNWVLTAS-K 332 (715)
Q Consensus 265 ~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-~~~~~~---------~~~~~I~sl~~spdg~~Lasgs-~ 332 (715)
.... .......++...++..+++...++.|+++|..+++ .+.... ..-.....| ++++++|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 12233455555555445544458899999987643 121111 111234555 77887776665 5
Q ss_pred CCeEEEEECCC-CeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE--eeccCCCEEEEEEc
Q 005096 333 DQIIKLYDIRA-MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI--HNVHDNTVWDLAWH 407 (715)
Q Consensus 333 dg~I~iwDl~t-~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s 407 (715)
.+.|.+||+.. ++. ...+.. ......+++++ +++++++....+.|.++|.+ +. ...+ ........++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CC-EEEEECGGGTCTTEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CC-EEEEeecccccCCceEEEEe
Confidence 67899999874 321 112211 13467788988 67887777778899999875 22 2222 22223568999998
Q ss_pred ---CCCCEEEEEECCC
Q 005096 408 ---PIGYLLCSGSNDH 420 (715)
Q Consensus 408 ---pdg~~L~sgs~Dg 420 (715)
++++.|++++..+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 7877777766543
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.4e-06 Score=103.13 Aligned_cols=275 Identities=11% Similarity=0.087 Sum_probs=173.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe--------------ccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--------------AHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--------------~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
...|.+|....+|. |.+|+..+-|.++|..+.+...... .....|.++....+++ |.+|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 6667764558999987765433221 2346799999988776 556776777
Q ss_pred EEEEeCCCCceeeee---------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEE
Q 005096 210 IKYWQNNMNNVKANK---------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVD 277 (715)
Q Consensus 210 I~iwd~~~~~~~~~~---------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~ 277 (715)
|..|+.......... ......|.+++...++. |.+|+.++-|.+||..+....... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 888887765443321 11345688888877766 556666667999997654332211 12346789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH- 353 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h- 353 (715)
...+++ |.+|+.++-|.+||.++++.. .+. .....|.++....+++ |.+|+. +-|.+||..+++........
T Consensus 414 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 414 KDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp ECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred ECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 887776 455777677999998776533 332 1346799998887776 555555 56889998876543332222
Q ss_pred ----CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 354 ----RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 354 ----~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...|.++.... ++.+.+ |+.++-|..||.++... ..+... ....|.++....+|.+.++ +.+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 35788888876 555544 44434477787755432 122111 2357899999888875554 4467657777
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
.+.
T Consensus 566 ~~~ 568 (781)
T 3v9f_A 566 ARN 568 (781)
T ss_dssp TTT
T ss_pred CCC
Confidence 644
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.91 E-value=2.7e-06 Score=90.73 Aligned_cols=242 Identities=11% Similarity=-0.003 Sum_probs=155.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~ 224 (715)
..+|.+..++. +|+.+.. ..|+..++...+....+.. ...+..++|++.++.|+.+ ...+.|..++++.......+
T Consensus 35 ~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 34566655543 5554443 4588888877665555443 3458899999766666544 46688999998876554444
Q ss_pred cCCCCCeEEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CC-CcEEEEECCC
Q 005096 225 SAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KD-SLVKLWDAKS 301 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~D-g~I~iwDl~s 301 (715)
.........+++.+.+..|+. -...+.|.+++++.......+.........|++++++..|+.+. .+ +.|..++++.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 333455678999876555544 44567899999875544444444445678999998766555554 34 6788888874
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
......+...-.....|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEE
Confidence 333222233345678999998777777665 45789999987433333333344566778873 566666666777888
Q ss_pred EEEcCCCCceEE
Q 005096 381 HWLVGHETPQVE 392 (715)
Q Consensus 381 iwd~~~~~~~~~ 392 (715)
.++..++.....
T Consensus 270 ~~~~~~G~~~~~ 281 (349)
T 3v64_C 270 SANKFTGKNQEI 281 (349)
T ss_dssp EEETTTCCSCEE
T ss_pred EEEccCCCccEE
Confidence 887545544333
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=3.4e-06 Score=99.88 Aligned_cols=273 Identities=12% Similarity=0.091 Sum_probs=173.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...|.++....+|. |.+|+.++-|..|+..+........ .....|.+++...+++ |.+|+.++-|.+|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 45799999999886 6677766669999987655443211 1235699999887776 44566666688888
Q ss_pred CCCCceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEe
Q 005096 215 NNMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 215 ~~~~~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs 289 (715)
..++...... ......|.++....++.+ .+++.++-|.++|..+++...... .....|.++....+++ |.+++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE
Confidence 7655433211 123467888888777664 447776779999987665433221 1346789999887776 55555
Q ss_pred CCCcEEEEECCCCceeEEeccC-----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEE
Q 005096 290 KDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTAL 360 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~-----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l 360 (715)
. +-|.+||.++++........ ...|.++....++++ .+|+.++-|..||.++.+.. .+.. ....|.++
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQI 544 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEE
Confidence 5 55899998876544333222 357999999888875 44555445778998766543 3321 23468888
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.... ++.+.++ +.+|.|..||..+.... .+... ....|.++....+|.+.++ +.+| |..|+.+
T Consensus 545 ~~d~-~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 545 YRSS-KGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp EECT-TSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETT
T ss_pred EECC-CCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECC
Confidence 8876 5555444 44666588887655422 22111 1246788888888875554 4555 5556654
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.88 E-value=2.5e-06 Score=92.39 Aligned_cols=242 Identities=12% Similarity=0.011 Sum_probs=157.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.+|.+..++ .+|+.+.. ..|+.+++...+....+.. ...+..++|++.+..|+ +-...+.|..++++.......+.
T Consensus 79 ~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCcccc-ceeEeecC-ccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 345555553 34554443 5699999887666555543 45688999997666555 44566889999988766544444
Q ss_pred CCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-C-CcEEEEECCCC
Q 005096 226 AHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-D-SLVKLWDAKSG 302 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~-s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-D-g~I~iwDl~s~ 302 (715)
........|++.+.+..|+.+ ...+.|.+++++.......+.........|++++++..|+.+.. + +.|..++++..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 334456788888765555544 45678998888655444444444466789999987776665543 3 67888888754
Q ss_pred ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 303 RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
.....+...-.....|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++....+.|..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEE
Confidence 43333333445678999998777676665 45789999987433333333344566788883 5667777777788888
Q ss_pred EEcCCCCceEEE
Q 005096 382 WLVGHETPQVEI 393 (715)
Q Consensus 382 wd~~~~~~~~~~ 393 (715)
++..++.....+
T Consensus 314 ~~~~~G~~~~~i 325 (386)
T 3v65_B 314 ANKFTGKNQEII 325 (386)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCcceEEE
Confidence 885555444343
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.87 E-value=5.4e-07 Score=91.07 Aligned_cols=181 Identities=7% Similarity=0.002 Sum_probs=130.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
+.-...|.|+ ++.++++.+.+|.|+++|+++++.+..+ .... .-..+++. .++++++.-.++.+.+||.++.+.+.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3445678887 4556667777889999999999998887 3222 12335554 23444556678999999999999888
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
++..... -..++ .|++.|+.+..++.|.++|.++.+.+..+.... ..++.+.|. +|++++....++.|.+.
T Consensus 131 ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 8765332 23344 578888888889999999999998888775422 245677887 67655555568899999
Q ss_pred ECCCCceeEEeccC-------------CCceEEEEEcCCCCEEEEEE
Q 005096 298 DAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 298 Dl~s~~~~~~~~~~-------------~~~I~sl~~spdg~~Lasgs 331 (715)
|.++++.+..+... .+..+.|+|+++++.|++.+
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999988877521 13568999999776666655
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.84 E-value=4.4e-07 Score=90.87 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=131.0
Q ss_pred eEEEEeccC--CCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEE-ECCCcE
Q 005096 178 FEMILQAHD--HAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTV 252 (715)
Q Consensus 178 ~~~~l~~h~--~~V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~V 252 (715)
.+.++ .|+ .-...+.|+. +.++.+.+.+ ..|+++|+++++.+..+.... ......+..+++.|+.. -.++.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEE
Confidence 44555 454 3466888874 5555666654 489999999999888775433 22222223334555544 458899
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCEE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWV 327 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~L 327 (715)
.+||.++.+.+.++..... -..+++ |++.|+++..++.|.++|.++.+.+.++.-.. ..++.+.|. +|+.+
T Consensus 88 ~v~D~~tl~~~~ti~~~~~-Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGE-GWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEETTTTEEEEEEECSSC-CCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCC-ceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 9999999999998875432 245554 56767777778899999999998888775322 345667776 66655
Q ss_pred EEEECCCeEEEEECCCCeEEEEeecC-------------CCCeEEEEEccCCCCEEEEEe
Q 005096 328 LTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~~~~~~~h-------------~~~V~~l~~sp~~~~~l~sgs 374 (715)
+..-.+..|.+.|.++++.+..+... ....+.|++++..+++++||-
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55546889999999999998887622 135689999996666666663
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.82 E-value=1.3e-06 Score=87.48 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=130.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQS--GEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~d--g~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..-.-.+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... -..+++. +++++++.-.++.+.+||.++.+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcE
Confidence 34466888876 4445555554 48999999999999888654332 1234443 234445556789999999999998
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+.++...... ..+ +.|+..|+.+..++.|.++|.++.+.+..+.... ..++.+.|. ++++++..-.+..|.
T Consensus 98 ~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 98 RARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 8887654332 334 4577777777778999999999998888776432 345677776 666565555678999
Q ss_pred EEECCCCceeEEeccC-------------CCceEEEEEcCCCCEEEEEEC
Q 005096 296 LWDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~-------------~~~I~sl~~spdg~~Lasgs~ 332 (715)
+.|.++++.+..+... .+..+.|+|+++++.|++.+.
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999988877521 235689999998887777663
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.82 E-value=9.8e-08 Score=110.95 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=154.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCceEE--EEe-ccCCCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 005096 149 RVLWTP-TGRRLITGSQSG-----------EFTLWNGQSFNFEM--ILQ-AHDHAIRSMVWSHNDNWMVSGDD-GGAIKY 212 (715)
Q Consensus 149 ~l~~sp-dg~~Latgs~dg-----------~I~Iwd~~~~~~~~--~l~-~h~~~V~~l~~spdg~~L~tgs~-dg~I~i 212 (715)
++++.+ ++++++.|+.+. .+.+||..+.+... .+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 888888887643 58899988765432 222 12333445677789999999884 468999
Q ss_pred EeCCCCceeeeecCCCCC-eEEEEEecCCCEEEEEE-CC-----CcEEEEECCCCeeEEEe----cccCCceEEEEEcCC
Q 005096 213 WQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCS-DD-----TTVKVWDFARCQEERSL----TGHGWDVKSVDWHPT 281 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~-I~~l~~spd~~~Las~s-~D-----g~V~iwdl~~~~~~~~l----~~~~~~I~si~~spd 281 (715)
||..+++-...-...... -.++++.+++++++.|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998876543332222222 23455566889988888 34 57999999876543320 000000000112234
Q ss_pred CCEEEEEeCC---------CcEEEEECCCCceeEEeccCC---------CceEEEEEcC-CCCEEEEEECCC--------
Q 005096 282 KSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQ-NGNWVLTASKDQ-------- 334 (715)
Q Consensus 282 g~~L~sgs~D---------g~I~iwDl~s~~~~~~~~~~~---------~~I~sl~~sp-dg~~Lasgs~dg-------- 334 (715)
+++++.++.| ..+.+||.++........... ..-.++.|.. +++++++|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 356788988765443322111 1234555543 677777877532
Q ss_pred ---eEEEEECCCCeEEEEe--ecCCCC-eEEEEEccCCCCEEEEEeCC-----------CcEEEEEcCCCCceEEE-eec
Q 005096 335 ---IIKLYDIRAMKELESF--RGHRKD-VTALAWHPFHEEYFVSGSLD-----------GSIFHWLVGHETPQVEI-HNV 396 (715)
Q Consensus 335 ---~I~iwDl~t~~~~~~~--~~h~~~-V~~l~~sp~~~~~l~sgs~D-----------G~I~iwd~~~~~~~~~~-~~~ 396 (715)
.|.+||..+..-.... ...... -.++++.+ ++++++.|+.+ ..+.+||..+....... ...
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~ 508 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence 6888888766544332 222222 23445555 78888888754 46889998664321110 001
Q ss_pred cCCCEEEEEEcCCCCEEEEEEC
Q 005096 397 HDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 397 h~~~V~~l~~spdg~~L~sgs~ 418 (715)
......+..+.+|+++++.|+.
T Consensus 509 ~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 509 VRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCTTEEEEECTTSCEEEEECC
T ss_pred ccccccHhhcCCCcEEEecCCC
Confidence 1112234556789999999885
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.81 E-value=2.1e-06 Score=89.54 Aligned_cols=224 Identities=8% Similarity=-0.003 Sum_probs=138.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~ 222 (715)
.....++|+++++++++-..++.|..||.+.. ....+. .......+++.++++++++..... .|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56789999999987667668899999997753 333333 345688999999999666554332 46667777776543
Q ss_pred eecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEec---------ccCCceEEEEEcCCCCEEEEE-eC
Q 005096 223 NKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT---------GHGWDVKSVDWHPTKSLLVSG-GK 290 (715)
Q Consensus 223 ~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~---------~~~~~I~si~~spdg~~L~sg-s~ 290 (715)
.... .......++...++..+++-..++.|+++|..+++. +.... ......+.| ++++++|+++ ..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 122334555544444444444588999999875431 21110 111234455 6777766555 45
Q ss_pred CCcEEEEECCC-Cce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EeecCCCCeEEEEEc--
Q 005096 291 DSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGHRKDVTALAWH-- 363 (715)
Q Consensus 291 Dg~I~iwDl~s-~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~--~~~~h~~~V~~l~~s-- 363 (715)
.+.|.+||++. ++. ...+.. ......++++++|+++++....+.|.++|.. ++... .+.......++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~ 265 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT 265 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence 67899999874 321 112211 1345678899999877776677899999975 55432 333334678999998
Q ss_pred -cCCCCEEEEEeC
Q 005096 364 -PFHEEYFVSGSL 375 (715)
Q Consensus 364 -p~~~~~l~sgs~ 375 (715)
+ +++.|++++.
T Consensus 266 ~~-d~~~LyVt~~ 277 (306)
T 2p4o_A 266 EG-DCTAIYVVTN 277 (306)
T ss_dssp TT-TTTEEEEEEC
T ss_pred cC-CCCEEEEECC
Confidence 6 4444444433
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.81 E-value=2e-05 Score=82.61 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=146.4
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC----CceeeeecCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNM----NNVKANKSAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~----~~~~~~~~~h~~~I~ 232 (715)
+|+.+.. ..|+..|+.+.+....+. .......++|+++++.|+.+ ..++.|..++++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444444 458999998877666554 34568899999876666544 4568899999876 222222322334567
Q ss_pred EEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEe-
Q 005096 233 DLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--SLVKLWDAKSGRELCSF- 308 (715)
Q Consensus 233 ~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D--g~I~iwDl~s~~~~~~~- 308 (715)
.|++...+..|+ +-..++.|.++|++.......+.........|++++++..|+.+... +.|..++++. +....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 899987555554 44567899999987554433344344567899999877766655543 6788888864 333333
Q ss_pred ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
...-.....|+|++++..|+.+. ..+.|..+|+.. .....+. ........|++. ++.++++-...+.|..++.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 33345678999998877777665 456899999874 3333332 123456778874 4666666667778888887
Q ss_pred CCCCceE
Q 005096 385 GHETPQV 391 (715)
Q Consensus 385 ~~~~~~~ 391 (715)
.+++...
T Consensus 237 ~~g~~~~ 243 (316)
T 1ijq_A 237 LTGSDVN 243 (316)
T ss_dssp TTCCCCE
T ss_pred CCCcceE
Confidence 6554433
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.79 E-value=3.7e-07 Score=107.72 Aligned_cols=243 Identities=9% Similarity=-0.028 Sum_probs=137.6
Q ss_pred CCCc-cEEEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-ceEE-EEeccCCCEEEEEEcCCCCEEEEEeCC-----
Q 005096 142 KNRC-SINRVLWT-PTGRRLITGSQ-SG----EFTLWNGQSF-NFEM-ILQAHDHAIRSMVWSHNDNWMVSGDDG----- 207 (715)
Q Consensus 142 ~H~~-~I~~l~~s-pdg~~Latgs~-dg----~I~Iwd~~~~-~~~~-~l~~h~~~V~~l~~spdg~~L~tgs~d----- 207 (715)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|++|++.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 4443 78899999 99999886543 33 4999999988 6321 111 113468899999888776654
Q ss_pred CcEEEEeCCCCce--eeeec-CCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCe-eE--EEe-cccCCceEEEE
Q 005096 208 GAIKYWQNNMNNV--KANKS-AHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQ-EE--RSL-TGHGWDVKSVD 277 (715)
Q Consensus 208 g~I~iwd~~~~~~--~~~~~-~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~~~-~~--~~l-~~~~~~I~si~ 277 (715)
..|+++++.++.. ...+. ........+.|++|+++|+..+. ...|+++|+.+.. .. ..+ ........++.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 2577788877532 22222 22345678899999999887653 3468889987652 12 333 33344556666
Q ss_pred EcCCCCEEEEEeCC----CcEEEEECCCC-ceeE-EeccC-CCceEEEEEcCCCCEEEEEECCCe--EEEEEC-------
Q 005096 278 WHPTKSLLVSGGKD----SLVKLWDAKSG-RELC-SFHGH-KNMVLCVKWNQNGNWVLTASKDQI--IKLYDI------- 341 (715)
Q Consensus 278 ~spdg~~L~sgs~D----g~I~iwDl~s~-~~~~-~~~~~-~~~I~sl~~spdg~~Lasgs~dg~--I~iwDl------- 341 (715)
|+.++.+++....+ ..|.++|+.+. +... .+... ...+..+.+. ++.++++...++. |.++|+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVF 405 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccc
Confidence 65444444444443 25777787653 2222 23221 2245666665 3344555666775 556675
Q ss_pred CCCeEEEEeecCC-CCeEEEEE----ccCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005096 342 RAMKELESFRGHR-KDVTALAW----HPFHEEYFVSGSLD---GSIFHWLVGHET 388 (715)
Q Consensus 342 ~t~~~~~~~~~h~-~~V~~l~~----sp~~~~~l~sgs~D---G~I~iwd~~~~~ 388 (715)
.+++.+..+.... ..+..+.+ +.++..++++.+.. ..|+.+|+.++.
T Consensus 406 ~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 406 KAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3333133332111 22333332 33455566665543 346666765544
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.79 E-value=1.1e-05 Score=85.89 Aligned_cols=231 Identities=5% Similarity=-0.079 Sum_probs=148.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEeccc
Q 005096 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 191 ~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
|.+..+ ..+|+.+. ...|+..+++.......+. ....+..++|.+.+..|+.+. .++.|+.++++.......+...
T Consensus 38 C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 38 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp EEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 444444 33444443 3457778877665544433 344588999997666666554 5788999998766544444433
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCeE
Q 005096 270 GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KD-QIIKLYDIRAMKE 346 (715)
Q Consensus 270 ~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~d-g~I~iwDl~t~~~ 346 (715)
......++++..+..| ++-...+.|.+++++.......+.........|++++.+.+|+... .+ +.|..+|+.. ..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~ 193 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SG 193 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CS
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CC
Confidence 4456788998755544 5555567899999885544444444445678999998766666554 34 7898888864 33
Q ss_pred EEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 347 LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 347 ~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
...+ ...-...+.|+++++++.++++-...+.|..+|++..... .+..........|++. ++.++++-...+.|..+
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEE
Confidence 3333 2334567899999866777777777788999998754432 3333334566788884 45555665567777777
Q ss_pred ec
Q 005096 426 CR 427 (715)
Q Consensus 426 dl 427 (715)
+.
T Consensus 272 ~~ 273 (349)
T 3v64_C 272 NK 273 (349)
T ss_dssp ET
T ss_pred Ec
Confidence 64
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.78 E-value=1.8e-05 Score=83.00 Aligned_cols=225 Identities=8% Similarity=-0.028 Sum_probs=144.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC----CeeEEEecccCCceE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR----CQEERSLTGHGWDVK 274 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~----~~~~~~l~~~~~~I~ 274 (715)
+|+.+.. ..|+..|++..+....+. .......++|++++..|+.+. .++.|..+|++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444443 568889988876555443 345678999998766665554 468999999875 222223332334567
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEe-
Q 005096 275 SVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESF- 350 (715)
Q Consensus 275 si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~- 350 (715)
.|+++..+. ++++-..++.|.++|++.......+.........+++++++.+|+.+... +.|..+++. ++....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE
Confidence 899986555 44555667889999987544333333334567899999877767666543 688888886 4333333
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
...-.....|+++++++.++++-+..+.|..+|++..... .+... .......|++. .+.++++-...+.|..++..
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 2334567899999866666677667789999999754332 22221 23456788885 35566666667888888764
Q ss_pred C
Q 005096 429 R 429 (715)
Q Consensus 429 ~ 429 (715)
.
T Consensus 238 ~ 238 (316)
T 1ijq_A 238 T 238 (316)
T ss_dssp T
T ss_pred C
Confidence 3
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.76 E-value=2e-05 Score=85.62 Aligned_cols=234 Identities=10% Similarity=-0.024 Sum_probs=153.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCC----ceeeeecCCCCCe
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMN----NVKANKSAHKESV 231 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~----~~~~~~~~h~~~I 231 (715)
.+|+.+.. ..|+..+++.......+. ....+..|+|+..++.|+.+ ..++.|+.++++.. .....+.......
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 35555544 579999998776655544 45678899999876666555 45678888888752 2333333345567
Q ss_pred EEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEe
Q 005096 232 RDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 232 ~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~ 308 (715)
..|++...+..|+. -...+.|.+.|++.......+.........|++++.+.+|+.+.. .+.|...+++.......+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 88999875555554 455788999998766555455445556889999997776666653 368999998754444344
Q ss_pred ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...-.....|++++++..|+.+. ..+.|..+|+........+.. .......|++. ++.++++-...+.|..+|..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 43446789999998877777765 457899999874333222222 23455677773 56677777777888888866
Q ss_pred CCCceEEEe
Q 005096 386 HETPQVEIH 394 (715)
Q Consensus 386 ~~~~~~~~~ 394 (715)
++.....+.
T Consensus 320 ~G~~~~~i~ 328 (400)
T 3p5b_L 320 TGSDVNLLA 328 (400)
T ss_dssp SCCCCEEEE
T ss_pred CCCceEEEe
Confidence 665554443
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.75 E-value=3.8e-05 Score=80.97 Aligned_cols=268 Identities=7% Similarity=0.002 Sum_probs=149.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe----ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~----~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
...|.+|.|..++..++ ++.+|.|.. ..+.++.-..+. .....+.+|.|.+ ++.++ ++.++.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 45799999988877777 456776533 333332222211 1244688999875 44444 455665443 233333
Q ss_pred eeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEE-EECCCCeeE-EEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 220 VKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 220 ~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~i-wdl~~~~~~-~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
...... .+...+..|.+..++..+++ +.++.|.. .| .++.- .........+.++++.+++.+++++...+.+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~ 186 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY 186 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEE-eCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 222221 22345777887766665554 45665432 23 22222 2223345578899999988877766543333
Q ss_pred EEEEC--CCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCC
Q 005096 295 KLWDA--KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEE 368 (715)
Q Consensus 295 ~iwDl--~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~ 368 (715)
+-+|- .+.+.+. ......+..+.+.++++++ +++.+|.|++.+...++.-..+.. ....+.++++.+ ++.
T Consensus 187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~ 262 (327)
T 2xbg_A 187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNE 262 (327)
T ss_dssp EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSC
T ss_pred EEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCE
Confidence 33442 2223321 2345678899999888755 455688887775333443333321 224588899887 566
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+++++ .+|.| ++..+.+..-..+... ....+.++.|..++ .+++++.+|.|.-++
T Consensus 263 ~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 VWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 66654 46766 3444434333222211 23567888887544 577777899776664
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=3e-06 Score=93.07 Aligned_cols=236 Identities=9% Similarity=0.059 Sum_probs=142.3
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCc
Q 005096 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-G----AIKYWQNNMNN 219 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g----~I~iwd~~~~~ 219 (715)
....|+|++ ++..|+++...+.|+++|.++........ .......|+|++++++|+++... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457899998 45667777666889999998766555443 45668899999999977666542 2 2333333 222
Q ss_pred ee--eeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEE-eCCCcE
Q 005096 220 VK--ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSG-GKDSLV 294 (715)
Q Consensus 220 ~~--~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sg-s~Dg~I 294 (715)
.. ..+. .......+++++ ++.++++-..++.|+.||............ ....-..|+|++++++|+++ ..++.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 1221 234467788999 566566655678999999987654222221 22456789999999955544 566789
Q ss_pred EEEECCC--Cce--eEEeccC---------------CCceE-EEEEc--------CCCCEEEEEECCCeEEEEECCCCeE
Q 005096 295 KLWDAKS--GRE--LCSFHGH---------------KNMVL-CVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 295 ~iwDl~s--~~~--~~~~~~~---------------~~~I~-sl~~s--------pdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
..+|.+. ++. +..+.+. -..-. .+++. .+++++++-...+.|+.+| .+++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 9987653 211 1222111 01122 44443 3355444444567888888 44654
Q ss_pred EEEeec----C-------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 347 LESFRG----H-------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 347 ~~~~~~----h-------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...... . -.....|+++++++.++++-..+.+|+.++.+
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 333321 0 11467888887456666666666778777653
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.71 E-value=9.3e-06 Score=87.82 Aligned_cols=225 Identities=5% Similarity=-0.102 Sum_probs=147.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~ 277 (715)
.+|+.+. ...|+.+++.......... ....+..++|.+.+..|+.+. .++.|+.++++.......+.........|+
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 4454443 3578888887765544443 345688999997666665554 567899999877654444443344567888
Q ss_pred EcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCeEEEEeecCC
Q 005096 278 WHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-D-QIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 278 ~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~-d-g~I~iwDl~t~~~~~~~~~h~ 354 (715)
+++.+..| ++-...+.|.+++++.......+.........|++++++.+|+.+.. + +.|..+|+............-
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 245 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 245 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 88755544 45555678989888755444444444466889999987776666553 3 688888887433333333344
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
...+.|+|+++++.++++-+..+.|..+|++.... ..+..........|++. ++.++++....+.|..++.
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence 56789999986677777777778899999865443 23333334567788884 4556666666788877774
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.69 E-value=1.2e-05 Score=81.34 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=137.3
Q ss_pred EEecCCCCccEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+.+.+-.+.+..++|+++++.|+ +...++.|...|.. ++.++.+... ......|++..++.++++.-.++.|.+++
T Consensus 19 ~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 19 GKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 356777777899999999876555 57788899999998 7777777432 35688899998887767766778899988
Q ss_pred CCCCce---eeee------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeeEEEec-------ccCCceEE
Q 005096 215 NNMNNV---KANK------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLT-------GHGWDVKS 275 (715)
Q Consensus 215 ~~~~~~---~~~~------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~~~~l~-------~~~~~I~s 275 (715)
+..... .... ...+.....|+|+++++.|+++.......||.+. ....+..+. .....+.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 765432 1111 1234457899999999888777766555555553 111112221 13346789
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCC---------CceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 276 VDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 276 i~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---------~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
+++++... +++....+..|.++|.+ ++.+..+.-.. ..-..|+|.++|+ |++.++.+.+++|.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 99999765 55555566788889976 55555543221 2568999999998 555577777777754
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.68 E-value=2e-05 Score=82.83 Aligned_cols=232 Identities=10% Similarity=0.009 Sum_probs=146.4
Q ss_pred EEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcee-eeecCCCCCeEE
Q 005096 158 RLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVK-ANKSAHKESVRD 233 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~-~~~~~h~~~I~~ 233 (715)
+|+.+. ...|+.+|++... ....+. ....+..++|...+..|+ +-..++.|..++.+..... ..+.........
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344443 4568999988753 222222 224567899988655554 4456688999988766321 222222345678
Q ss_pred EEEecCCCEEE-EEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEecc
Q 005096 234 LSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 234 l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~~ 310 (715)
+++...+..|+ +-...+.|.+++++.......+.........|++++.+.+|+.+.. .+.|..++++.......+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 88987555554 4455778999998754433334345566789999987666666653 57888888874333333333
Q ss_pred CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 311 HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 311 ~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.-..-+.|+|++++..|+.+. ..+.|..+|+........+.........|++. .+.++++-...+.|..++..++..
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCc
Confidence 345678999999777777665 56789999987433222223344566778775 456666766778888888866655
Q ss_pred eEEE
Q 005096 390 QVEI 393 (715)
Q Consensus 390 ~~~~ 393 (715)
...+
T Consensus 242 ~~~i 245 (318)
T 3sov_A 242 LREI 245 (318)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4443
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.66 E-value=1.2e-05 Score=81.43 Aligned_cols=201 Identities=8% Similarity=0.097 Sum_probs=136.1
Q ss_pred eecCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
.+.+....+..|+|+++++.|+ +...++.|...|.. ++.++.+. ........|++..++.++++.-.++.|.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445566899999999776555 56778899999987 77777764 223578899999888766666567889999886
Q ss_pred CCcee---EEec------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECC---CCeEEEEee-------cCCCCeEEEE
Q 005096 301 SGREL---CSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR---AMKELESFR-------GHRKDVTALA 361 (715)
Q Consensus 301 s~~~~---~~~~------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~---t~~~~~~~~-------~h~~~V~~l~ 361 (715)
....+ .... ..+.....|+|+++++.|+++.......||.++ ....+..+. .....+.+|+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54422 2221 134457899999999888887766555555553 111122221 2345689999
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC---------CCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD---------NTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~---------~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++..+++++....+..|.++|.... ......-.. ..-..|+|.++|+ |+..++-+.+++|+.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 99988888888888888999987654 223222111 2568999999998 455577776655543
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.64 E-value=8.6e-06 Score=89.52 Aligned_cols=236 Identities=10% Similarity=0.081 Sum_probs=142.5
Q ss_pred ccEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC----c-EEEEeCCC
Q 005096 145 CSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG----A-IKYWQNNM 217 (715)
Q Consensus 145 ~~I~~l~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg----~-I~iwd~~~ 217 (715)
..-..|+|+++ +..|+++...+.|+.+|..+++..... ........|+|+++++ |++++..+ . +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999984 455666655588999999877665544 3455689999999999 54444321 1 33333221
Q ss_pred Cce-eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEe-cc-cCCceEEEEEcCCCCEEEEE-eCCC
Q 005096 218 NNV-KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-TG-HGWDVKSVDWHPTKSLLVSG-GKDS 292 (715)
Q Consensus 218 ~~~-~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~-~~~~I~si~~spdg~~L~sg-s~Dg 292 (715)
... ...+. .......+++.+ ++.++++-..++.|+.+|..++.....+ .. ....-..|+|++++++|+++ ..++
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 234456788888 5665555556788999998866552222 21 12223469999999955555 4567
Q ss_pred cEEEEECC--CCce--eEEeccC---------------CCceEEEEE---------cCCCCEEEEEECCCeEEEEECCCC
Q 005096 293 LVKLWDAK--SGRE--LCSFHGH---------------KNMVLCVKW---------NQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 293 ~I~iwDl~--s~~~--~~~~~~~---------------~~~I~sl~~---------spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
.|+.+|++ +++. ...+.+. -..-..+++ ..+++++++-...+.|+.+|. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2321 1122111 123567888 666766666666788999985 46
Q ss_pred eEEEEeecC------------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 345 KELESFRGH------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 345 ~~~~~~~~h------------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
... ++.+. -.....|++++.++.++++-..+++|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 443 33221 12356788884366666666666777777653
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.2e-06 Score=90.07 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=144.0
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-C----cEEEEECCCCe
Q 005096 188 AIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T----TVKVWDFARCQ 261 (715)
Q Consensus 188 ~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g----~V~iwdl~~~~ 261 (715)
....|+|++ ++..|+++...+.|+.+|++.+.+..... .......|+|++++++|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 456889997 45667666666889999988776554433 45668899999999977666652 2 23334432 21
Q ss_pred eE--EEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEE-CCCeE
Q 005096 262 EE--RSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTAS-KDQII 336 (715)
Q Consensus 262 ~~--~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs-~dg~I 336 (715)
.. ..+. .......+++++ ++.++++-..++.|..||..++....... ........|+|++++++|+++. .++.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 2222 234467889999 66666666677899999998665422222 2234578999999999666554 56789
Q ss_pred EEEECCC--CeE--EEEeecC---------------CCCeE-EEEEcc-------CCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 337 KLYDIRA--MKE--LESFRGH---------------RKDVT-ALAWHP-------FHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 337 ~iwDl~t--~~~--~~~~~~h---------------~~~V~-~l~~sp-------~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.++|... ++. +..+.+. -..-. .+++.. .++.++++-...++|+.++. .+ .
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-R 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS-E
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC-c
Confidence 9987653 222 1222211 01122 455432 13455565556677888873 22 2
Q ss_pred eEEEeec-----------------cCCCEEEEEEcCC-CCEEEEEECCCeEEEEecC
Q 005096 390 QVEIHNV-----------------HDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 390 ~~~~~~~-----------------h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~ 428 (715)
+..+... .-..-+.|+++++ +.++++-..++.|+.++++
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2222211 0125789999984 6666666677888888764
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.62 E-value=4.9e-05 Score=82.56 Aligned_cols=228 Identities=7% Similarity=-0.033 Sum_probs=147.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC----eeEEEecccCCce
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC----QEERSLTGHGWDV 273 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~----~~~~~l~~~~~~I 273 (715)
.+|+.+. ...|+..+++........ .....+..|+|+..+..|+.+. .++.|+.++++.. .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3444444 467888888876554443 3456788999998766666655 4678999998652 2333333344567
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEe
Q 005096 274 KSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 350 (715)
Q Consensus 274 ~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~ 350 (715)
..|+++..+. ++++-...+.|.+.|++.......+.........|++++.+.+|+.... .+.|...++........+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 8899987444 5555556788999998865544444444556889999997777776653 368999998744333333
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
...-.....|++++.+++++++-...+.|..+|++.......+.. ........|++. .+.++++-...+.|..++...
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC
Confidence 334467899999985666666666778899999865443322221 122455677774 345566666677888887543
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.59 E-value=1.5e-05 Score=87.56 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=145.0
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 005096 188 AIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC 260 (715)
Q Consensus 188 ~V~~l~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~ 260 (715)
....|+|+++ +..|+++...+.|+.+|..++.+.... .......+|+++++++ |+++...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3568999984 556666665589999999877665543 3455689999999999 55554322 1333332211
Q ss_pred ee-EEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEe-c-cCCCceEEEEEcCCCCEEEEEE-CCCe
Q 005096 261 QE-ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSF-H-GHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (715)
Q Consensus 261 ~~-~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~-~~~~~I~sl~~spdg~~Lasgs-~dg~ 335 (715)
.. ...+. .......+++++ +++++++-..++.|+.+|..+++....+ . .....-..|+|++++++|+++. ..+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11121 234456788999 6666666556788999999877652222 2 1223345799999999666655 5678
Q ss_pred EEEEECC--CCeE--EEEeecC---------------CCCeEEEEE---------ccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 336 IKLYDIR--AMKE--LESFRGH---------------RKDVTALAW---------HPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 336 I~iwDl~--t~~~--~~~~~~h---------------~~~V~~l~~---------sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
|+.+|+. ++.. ...+.+. -.....+++ .. +++++++-...++|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CC
Confidence 9998865 2321 1222211 123566888 44 6667777667788888874 22
Q ss_pred CceEEEeec-----------------cCCCEEEEEEc-CCCCEEEEEECCCeEEEEecC
Q 005096 388 TPQVEIHNV-----------------HDNTVWDLAWH-PIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 388 ~~~~~~~~~-----------------h~~~V~~l~~s-pdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.+..+... .-.....|+++ .++.++++-..++.|+.++++
T Consensus 375 -~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 01246789999 677777777778889888774
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.58 E-value=5.6e-05 Score=88.98 Aligned_cols=232 Identities=10% Similarity=-0.014 Sum_probs=147.5
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC----ceeeeecCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMN----NVKANKSAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~ 232 (715)
+|+.+. ...|+..++...+....+. ....+..|+|...+..|+ +-...+.|+.++++.. .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4568888888766555544 356678999998665555 4455678888888753 22333333445677
Q ss_pred EEEEecCCCEEEEE-ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEec
Q 005096 233 DLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 233 ~l~~spd~~~Las~-s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~ 309 (715)
.|++...+..|+.+ ...+.|.+.+++.......+.........|++++.+.+|+.+.. .+.|.+.+++.......+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 89998877655554 45789999999765544444445556889999998776666653 2678889987554444444
Q ss_pred cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..-.....|++++.+..|+.+. ....|..+|+........+.. .-....+|++. ++.++++-...+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 4446789999998777777665 456899999864433333332 22344566663 445555655667777777655
Q ss_pred CCceEEE
Q 005096 387 ETPQVEI 393 (715)
Q Consensus 387 ~~~~~~~ 393 (715)
+.....+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 5444333
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.54 E-value=4.7e-05 Score=79.98 Aligned_cols=228 Identities=6% Similarity=-0.011 Sum_probs=143.8
Q ss_pred EEEEEeCCCcEEEEeCCCCc-eeeeecCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCee-EEEecccCCceEEE
Q 005096 200 WMVSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQE-ERSLTGHGWDVKSV 276 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si 276 (715)
+|+.+. ...|+.++++... ...........+..++|...+..|+.+ ..++.|..++++.... ...+.........+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 4678888887753 111111223456788998866555554 4567899999876532 12222233456788
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEe-ec
Q 005096 277 DWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF-RG 352 (715)
Q Consensus 277 ~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~-~~ 352 (715)
+++..+. ++++-...+.|.+++++.......+.........|++.+.+.+|+.+.. .+.|..+++.. +....+ ..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC
Confidence 8886554 4455556778999998754433334344556789999987777776663 57898888863 333333 33
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-..-+.|+++++++.++++-+..+.|..+|++..... .+..........+++.. +.++++-...+.|..++.....
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 34567899999866667777777788999998754332 23332345667888763 4555665667888888875443
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.50 E-value=1.7e-06 Score=100.49 Aligned_cols=239 Identities=9% Similarity=0.023 Sum_probs=136.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCceeee--e-cCCCCCeEEEEEecCCCEEEEEEC-CCcEEE
Q 005096 191 SMVWSH-NDNWMVSGDDGG-----------AIKYWQNNMNNVKAN--K-SAHKESVRDLSFCRTDLKFCSCSD-DTTVKV 254 (715)
Q Consensus 191 ~l~~sp-dg~~L~tgs~dg-----------~I~iwd~~~~~~~~~--~-~~h~~~I~~l~~spd~~~Las~s~-Dg~V~i 254 (715)
++++.+ ++++++.|+.+. .+.+||..+++.... + ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 788888887543 588999887753322 1 122333445777789999998884 568999
Q ss_pred EECCCCeeEEEeccc-CCceEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCceeEEe----ccCCCceEEEEEcCC
Q 005096 255 WDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGG-KD-----SLVKLWDAKSGRELCSF----HGHKNMVLCVKWNQN 323 (715)
Q Consensus 255 wdl~~~~~~~~l~~~-~~~I~si~~spdg~~L~sgs-~D-----g~I~iwDl~s~~~~~~~----~~~~~~I~sl~~spd 323 (715)
||..+.+-...-... ...-.++++.++++++++|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998766433221111 11223556667899999988 34 56999999876533220 000000000122234
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeEEEEeecCC---------CCeEEEEEccCCCCEEEEEeCCC--------
Q 005096 324 GNWVLTASKD---------QIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDG-------- 377 (715)
Q Consensus 324 g~~Lasgs~d---------g~I~iwDl~t~~~~~~~~~h~---------~~V~~l~~sp~~~~~l~sgs~DG-------- 377 (715)
++.++.++.+ ..|.+||..+........... ..-.++.+...++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 357788887765433322211 12344555444778888887532
Q ss_pred ---cEEEEEcCCCCceEEE-eeccCCCE-EEEEEcCCCCEEEEEECC-----------CeEEEEecCC
Q 005096 378 ---SIFHWLVGHETPQVEI-HNVHDNTV-WDLAWHPIGYLLCSGSND-----------HTTKFWCRNR 429 (715)
Q Consensus 378 ---~I~iwd~~~~~~~~~~-~~~h~~~V-~~l~~spdg~~L~sgs~D-----------g~I~iWdl~~ 429 (715)
.|.+||..+....... ........ .+++..++++++++|+.+ ..+.+||...
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 5677777655432211 01122222 344567799999999865 4578888743
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.49 E-value=0.00043 Score=79.44 Aligned_cols=282 Identities=7% Similarity=-0.038 Sum_probs=152.9
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcee
Q 005096 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVK 221 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~--dg~I~iwd~~~~~~~ 221 (715)
.....|++...++.|+.+ ..++.|.+.+++.......+...-.....|++.+.+.+|+.++. .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 568899999866666655 45788999998765544444344455778999987666666553 356766676654444
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
......-.....|++++++..|+.+. ..+.|..+|++.......+.........|++..+ .++++-..++.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 33333455678999998777776665 4567888887653332222211112234444432 222222233444444443
Q ss_pred CCceeEEec-----------------------------------------------------------------------
Q 005096 301 SGRELCSFH----------------------------------------------------------------------- 309 (715)
Q Consensus 301 s~~~~~~~~----------------------------------------------------------------------- 309 (715)
+++.+..+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 332211110
Q ss_pred -----------------------cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 310 -----------------------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 310 -----------------------~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
..-..+..|+|++.+..|+.+. ..+.|+.+++........+.........|++...
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 0001123344444333333322 2344444444432222222222345678888765
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC--CCeEEEEecC
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN--DHTTKFWCRN 428 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~--Dg~I~iWdl~ 428 (715)
+++++++-+..+.|.+.+++..... .+....-....+|++.+...+|+.+.. ...|...+++
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~~-~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMRK-ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCE-EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeEE-EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 6777777777889999998765432 333333457889999997445544443 2455555543
No 288
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.44 E-value=0.00041 Score=79.59 Aligned_cols=202 Identities=4% Similarity=-0.098 Sum_probs=125.2
Q ss_pred ccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcee
Q 005096 145 CSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~ 221 (715)
.....|+|++.+..|+.+.. .+.|..++++.... ...+...-.....|++...++.| ++-...+.|.+.+++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 45778999987777776654 67888898876532 33344333678899999866555 45556789999998865544
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwD 298 (715)
..+...-.....|++.+.+.+|+.+.. .+.|...+++.......+.........|+++++++.|+.+. ..+.|..+|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 443344556788999987777766654 35777777754433333333445678999998776666554 456788888
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEE
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELE 348 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~ 348 (715)
++.......+.........|++..+ .|+.+. .++.|...|..+++.+.
T Consensus 200 ~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 200 LDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp SSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccE
Confidence 8754332222212222346676544 455444 56788888987765433
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=4.4e-05 Score=84.48 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=143.0
Q ss_pred cEEEEEEcC-CCCEEEEE-eCCCeEEEEeCCCCceEEEEecc---CCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 005096 146 SINRVLWTP-TGRRLITG-SQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVW-------SHNDNWMVSGDDGG----- 208 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h---~~~V~~l~~-------spdg~~L~tgs~dg----- 208 (715)
.-..|+|+| +...|+++ ...+.|++.|++++.+...+... ......|+| +.++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34445554 44567999999887777665432 235899999 99999776666554
Q ss_pred --cEEEEeCCC-Ccee-----eeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECC-------CCee----------
Q 005096 209 --AIKYWQNNM-NNVK-----ANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFA-------RCQE---------- 262 (715)
Q Consensus 209 --~I~iwd~~~-~~~~-----~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~-------~~~~---------- 262 (715)
.|.+++... +... ..+. .......+++++++.. +++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 256665443 2221 1221 1234567888985544 4555567889999987 4443
Q ss_pred -EEE-ec-ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCce--eEEeccC---C------------CceE-EE
Q 005096 263 -ERS-LT-GHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAK--SGRE--LCSFHGH---K------------NMVL-CV 318 (715)
Q Consensus 263 -~~~-l~-~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~--s~~~--~~~~~~~---~------------~~I~-sl 318 (715)
... +. .....-..|+|++++++|+++ +....|+.+|.. ++.. ...+.+. . ..-. .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 21 223446799999999965555 456788886653 3321 1222211 0 1233 44
Q ss_pred EEc-------CCCCEEEEEECCCeEEEEECCCCeEEEEeecC------------------------CCCeEEEEEccCCC
Q 005096 319 KWN-------QNGNWVLTASKDQIIKLYDIRAMKELESFRGH------------------------RKDVTALAWHPFHE 367 (715)
Q Consensus 319 ~~s-------pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h------------------------~~~V~~l~~sp~~~ 367 (715)
+.. .+++++++=..+.+|+.+| .++. +.++.+. -.....|+++++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 443 4556555555678899998 4553 4444322 01256788877336
Q ss_pred CEEEEEeCCCcEEEEEcCCCCc
Q 005096 368 EYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.++++-..+.+|+.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 6666666677788887765543
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.0002 Score=84.22 Aligned_cols=227 Identities=7% Similarity=-0.032 Sum_probs=142.4
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC----eeEEEecccCCceE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC----QEERSLTGHGWDVK 274 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~----~~~~~l~~~~~~I~ 274 (715)
+|+.+ ....|+..++........+ .....+..|+|...+..|+.+. ..+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44444 3456888888766544433 3456678999998666655554 4678999998653 22333443445677
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEee
Q 005096 275 SVDWHPTKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 275 si~~spdg~~L~-sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~~ 351 (715)
.|+++..++.|+ +-...+.|.+.+++.......+.........|++++...+|+.+.. .+.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899987775454 4456788999999855444444444556889999998777776653 2689999987544444444
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..-.....|++++.+++++++-...+.|..++++.......+.. ..-.....|++.. ++++++-...+.|...+...
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCC
Confidence 44467899999985666666666677899999865544333221 1123455777643 34444444567777666533
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.40 E-value=6.6e-05 Score=78.89 Aligned_cols=192 Identities=9% Similarity=0.143 Sum_probs=129.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC----CC---EEEEEeC---CCcEEEEeCC--CCceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN----DN---WMVSGDD---GGAIKYWQNN--MNNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~---~L~tgs~---dg~I~iwd~~--~~~~~~ 222 (715)
...+++....++-|.+||+ +++.+..+.. +.++.+.+-++ ++ ++++... +++|++|+++ ++.+ .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l-~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-Q 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-e
Confidence 3456777777888999999 7888888754 56777666552 22 3333333 5789999773 4432 2
Q ss_pred eecC------CC-CCeEEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CCeeEEEecccCCceEEEEEcCCCCE
Q 005096 223 NKSA------HK-ESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 223 ~~~~------h~-~~I~~l~~--spd-~~-~Las~s~Dg~V~iwdl~-------~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
.+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++.. ...+..+.+++....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 2211 11 56677887 553 43 67888889999999982 3355666663 457889999988889
Q ss_pred EEEEeCCCcEEEEECC-----CCceeEEec--cCCCceEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCeEEEEee
Q 005096 285 LVSGGKDSLVKLWDAK-----SGRELCSFH--GHKNMVLCVKW--NQNGN-WVLTAS-KDQIIKLYDIR-AMKELESFR 351 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~-----s~~~~~~~~--~~~~~I~sl~~--spdg~-~Lasgs-~dg~I~iwDl~-t~~~~~~~~ 351 (715)
|+++-+|.-|..||.+ +++.+..+. .....+..|++ ..+++ ||++++ .+..+.|||.. +.+.+..|.
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999998777777755 234454442 22346888887 45555 777776 56799999996 566666664
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.36 E-value=0.00052 Score=84.11 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=162.3
Q ss_pred CccEEEEEEcCC------CCEEEEEeC-CCeEEEEeCCCCceEEEEecc-CCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 144 RCSINRVLWTPT------GRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 144 ~~~I~~l~~spd------g~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
...|.|+++.+. ++++++|.. |++|+|+++.+.+.+...... +....++.+.. ...+|.+|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 479999997 999999999987766543321 22344444432 33578889999998766
Q ss_pred eCC--CCceeee--ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-EEEEEcCC--CCEEE
Q 005096 214 QNN--MNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-KSVDWHPT--KSLLV 286 (715)
Q Consensus 214 d~~--~~~~~~~--~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-~si~~spd--g~~L~ 286 (715)
.++ ++.+... ...-...+.-..+...+..-+.+..+....++.-+. +....-. ....+ ....|+.+ .+-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s~l-~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFSNV-NLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEEEEEB-SSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEecc-ChHHhceEeccCcccCCCcEE
Confidence 544 3433322 112234555444544444444444455555555432 2221111 11223 23345432 23455
Q ss_pred EEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECC-------------------------------
Q 005096 287 SGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKD------------------------------- 333 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~d------------------------------- 333 (715)
..+ ++.++|..+.+... ++++. -...+..++++++.+.++++..+
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred EEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 444 45699887754322 22232 34567888888876655543311
Q ss_pred ------------------CeEEEEECCCCeEEEEeecCC-CCeEEEEE---ccCCCCEEEEEe----------CCCcEEE
Q 005096 334 ------------------QIIKLYDIRAMKELESFRGHR-KDVTALAW---HPFHEEYFVSGS----------LDGSIFH 381 (715)
Q Consensus 334 ------------------g~I~iwDl~t~~~~~~~~~h~-~~V~~l~~---sp~~~~~l~sgs----------~DG~I~i 381 (715)
+.|+++|-.+++.+..+.-.. ..+.+++. ..+...+|++|+ ..|+|++
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v 868 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV 868 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence 247788888888776665333 33555543 332357888876 3578999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|++...+.........++.|++++-- +|++|++. ..+|++|++...+
T Consensus 869 f~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 869 FQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTS
T ss_pred EEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCc
Confidence 99974432222233457789998755 35444433 4799999997654
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.34 E-value=0.00013 Score=76.72 Aligned_cols=229 Identities=8% Similarity=0.008 Sum_probs=130.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
...+.+|.|++ + .+++++.++.|+.- .+.++.-..+. .+...+..|.+..+++.++++ .++.|..- .+.++.
T Consensus 79 ~~~~~~i~~~~-~-~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-T-EEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-C-eEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCC
Confidence 44688999975 4 34445566755543 22233222222 233567888887676666655 45544322 222322
Q ss_pred -eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC--CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 221 -KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 221 -~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl--~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
..........+..+++.+++.+++++...+.++-+|- .+.+.+. ......+..+++.++++++ +++.+|.|+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFS 230 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEe
Confidence 2222344567889999998887766544443444442 2333332 2345678899999888755 45567888777
Q ss_pred ECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCeEEEEEccCCCCEE
Q 005096 298 DAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 298 Dl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~---h~~~V~~l~~sp~~~~~l 370 (715)
+.+.++.-..+.. ....+.++++.+++.+++++ .++.| ++..+.++.-..+.. ....+.++.|.. +..+
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~~~ 306 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS--PDQG 306 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE--TTEE
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC--CCce
Confidence 5333333222221 22358899999887766665 46766 444444544333332 345688888874 4456
Q ss_pred EEEeCCCcEEEEEc
Q 005096 371 VSGSLDGSIFHWLV 384 (715)
Q Consensus 371 ~sgs~DG~I~iwd~ 384 (715)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 67778898776654
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.31 E-value=0.0014 Score=75.23 Aligned_cols=227 Identities=6% Similarity=-0.052 Sum_probs=150.6
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
+|+.+ ....|+..|+++.+....+.. .-..+..|+|+++++.|+.+ ..++.|..++++.......+.........|+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 45554 456799999987665444332 23568899999877666544 4568899998876554444443335678899
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeccCC
Q 005096 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 236 ~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
+...+..|+.+. ..+.|.+.+++.......+.........|+++|....|+.+.. .+.|...+++.......+. .-
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CC
Confidence 987666665554 4678999998654433333344456789999986666666653 5678888887544333333 45
Q ss_pred CceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 313 NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.....|+++++++.|+.+. ..+.|..+|+..... ..+.........|++. ++.++++-...+.|...|..++..
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCc
Confidence 6788999999877777665 457899999875433 3344444556788875 355666666678888888655543
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.00024 Score=78.57 Aligned_cols=242 Identities=10% Similarity=0.079 Sum_probs=146.9
Q ss_pred CEEEEEEcC-CCCEEEEE-eCCCcEEEEeCCCCceeeeecCC---CCCeEEEEE-------ecCCCEEEEEECCC-----
Q 005096 188 AIRSMVWSH-NDNWMVSG-DDGGAIKYWQNNMNNVKANKSAH---KESVRDLSF-------CRTDLKFCSCSDDT----- 250 (715)
Q Consensus 188 ~V~~l~~sp-dg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~-------spd~~~Las~s~Dg----- 250 (715)
....|+|+| ++..|+++ ...+.|+++|++.+.+....... ......|+| +.++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34445444 44477889998887776554332 235899999 99999777776654
Q ss_pred --cEEEEECCC-CeeE-----EEecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q 005096 251 --TVKVWDFAR-CQEE-----RSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK-------SGRE---------- 304 (715)
Q Consensus 251 --~V~iwdl~~-~~~~-----~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~-------s~~~---------- 304 (715)
.|.+++... +... ..+.. ......++++++ +.++++-..++.|..+|++ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 12221 224567888995 4555566677889999987 5543
Q ss_pred -eEE-e-ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEEC--CCCeE--EEEeecC---C------------CCeE-EE
Q 005096 305 -LCS-F-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDI--RAMKE--LESFRGH---R------------KDVT-AL 360 (715)
Q Consensus 305 -~~~-~-~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl--~t~~~--~~~~~~h---~------------~~V~-~l 360 (715)
... + .........|+|++++++|+++. ....|+.+|. .++.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 2 12334568999999999766654 5678888654 33332 1222221 1 1233 34
Q ss_pred EEcc------CCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-----------------------cCCCEEEEEEcCC-C
Q 005096 361 AWHP------FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----------------------HDNTVWDLAWHPI-G 410 (715)
Q Consensus 361 ~~sp------~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-----------------------h~~~V~~l~~spd-g 410 (715)
+... .+++++++-..+.+|+.++. ++ .+..+... .-..-+.|+++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 4431 25667777777788998883 33 22222211 0124678999997 7
Q ss_pred CEEEEEECCCeEEEEecCCCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.++++-..++.|+.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 7777777788999998865443
No 296
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.29 E-value=0.0017 Score=76.36 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=156.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
...|+||.-..+| +|..|+.+| |..||..+.+..... ......|.++....++ .|.+++.+| +.+||..+.....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 5679999999888 466777887 777885432211000 1123568888776655 566666665 7889987765433
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
........|.++.. .++ .|..++.+ -|.++|..+.+...... .....|.++..+.++.+.+ ++.+ -|..||
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~ 171 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYI 171 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCc
Confidence 21122345777654 344 56666766 58889987654432211 1235688888887777554 5554 478888
Q ss_pred CCCCceeEEecc------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 299 AKSGRELCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 299 l~s~~~~~~~~~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
..+++.. .+.. ....|.++....+++.|.+|+. +-|..+|..+++...........|.++.... ++.+.+
T Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi- 247 (758)
T 3ott_A 172 PSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLA- 247 (758)
T ss_dssp TTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEE-
T ss_pred cCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEE-
Confidence 8765432 2211 1234888888777776666664 4688899877654322112234577777765 444444
Q ss_pred EeCCCcEEEEEcCCCCceEEEee-------ccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHN-------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
|+.+ -|.+++..+.... .+.. .....|.++....+|.+ ..|+..| |.++
T Consensus 248 gT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~ 303 (758)
T 3ott_A 248 GTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLS 303 (758)
T ss_dssp EETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEE
T ss_pred EeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-cccc
Confidence 4444 5777877554322 2211 12346899988877764 4455566 4444
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.24 E-value=0.00027 Score=73.62 Aligned_cols=203 Identities=8% Similarity=0.051 Sum_probs=127.4
Q ss_pred CCccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceEEEEecc-----C--CCEEEEEE---cCCCCEEEEEeC-----
Q 005096 143 NRCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAH-----D--HAIRSMVW---SHNDNWMVSGDD----- 206 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~~~~~~~l~~h-----~--~~V~~l~~---spdg~~L~tgs~----- 206 (715)
...--.+++|......|++++ .+++|..||...+..+...... + ..+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 333445788987666666666 7899999998865544432211 1 13678999 578767665442
Q ss_pred --------CCcEEEEeCC---CCceeeeecC-------------CCCCeEEEEEecCCCEEEEEECC-CcEEEEECCCCe
Q 005096 207 --------GGAIKYWQNN---MNNVKANKSA-------------HKESVRDLSFCRTDLKFCSCSDD-TTVKVWDFARCQ 261 (715)
Q Consensus 207 --------dg~I~iwd~~---~~~~~~~~~~-------------h~~~I~~l~~spd~~~Las~s~D-g~V~iwdl~~~~ 261 (715)
+..|..||+. +++.+..... ....+.+++..++|+..++++.. +.|..++.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999998 6665543321 11248899999999999999888 888777765432
Q ss_pred eEEEec-----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEec--cC---CCceEEE-EEcCCCCEEE-
Q 005096 262 EERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFH--GH---KNMVLCV-KWNQNGNWVL- 328 (715)
Q Consensus 262 ~~~~l~-----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~-~~~~~--~~---~~~I~sl-~~spdg~~La- 328 (715)
....+. ......+.|+++|++++|++...++.|..+|+++... ...+. +. -.....| ..-.+|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 221211 1122467999999999998887799999999985332 01111 11 1123332 3334677644
Q ss_pred EEECCCeEEEEECCCCe
Q 005096 329 TASKDQIIKLYDIRAMK 345 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~ 345 (715)
+....+.+.+.+.+.++
T Consensus 251 ~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 251 GARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEETTEEEEEECSSTTS
T ss_pred EcCCCCEEEEECCCCcc
Confidence 44455666666555443
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.23 E-value=0.0012 Score=75.90 Aligned_cols=227 Identities=7% Similarity=-0.058 Sum_probs=148.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
.+|+.+ ....|+..+++.......+. ..-..+..|+|.+++..|+.+. .++.|+.++++.......+.........|
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 345444 45788999998765433322 2234688999998776666554 57889999987654444444333457788
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecC
Q 005096 277 DWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 277 ~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~~~h 353 (715)
+++..++.| ++-...+.|.+.|++.......+...-.....|++.+...+|+.... .+.|...++... ....+...
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~~~~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-ERTTLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-ceEEEECC
Confidence 888665545 44455678999998755433333344456789999986667776653 568888888643 33333335
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
-.....|++++.+++++++-...+.|..+|++.... ++..........|++.. +.++++-...+.|...|....
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 567889999986666666667778899999976544 23333344567888864 445555555788888776443
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.23 E-value=0.003 Score=65.18 Aligned_cols=233 Identities=10% Similarity=0.113 Sum_probs=151.6
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCC-
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h- 227 (715)
.-.+|..+.||.-. ...+.|+|+++...++.+... ..|.-=.|..+ +.|+..+ +..|+-|+++.. ...+.+..|
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 34467777666555 578999999999999888764 46666677644 4454443 358999998753 333333322
Q ss_pred ---CCCeEEEEEecCCCEEEEEEC-------CCcEEEEECCCCeeEEEecccCCceEEEEEcCC---CCEEEEEeCC---
Q 005096 228 ---KESVRDLSFCRTDLKFCSCSD-------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT---KSLLVSGGKD--- 291 (715)
Q Consensus 228 ---~~~I~~l~~spd~~~Las~s~-------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd---g~~L~sgs~D--- 291 (715)
...|.....+++.++++..+- .|.+.+|..+.. ....+++|......+.+.-+ .++|+.+...
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 346777777888888665432 367889988664 55667777655544444322 1244444332
Q ss_pred CcEEEEECCCC---c-----eeEE-ec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 292 SLVKLWDAKSG---R-----ELCS-FH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 292 g~I~iwDl~s~---~-----~~~~-~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
++++|.++... . .... +- ...+--.++..+..-..++..+.-|.|++||++++.++..-+.....|..
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 58999988532 1 1111 11 12344567888888889999999999999999999999988877777766
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
-+-+. ...=+++...+|.|.-..++...
T Consensus 307 ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 307 TAPHE-ATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEG-GGTEEEEEETTCEEEEEEECTTT
T ss_pred ecccC-CCCcEEEEcCCCEEEEEEECccc
Confidence 66554 33344445577777666665543
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.21 E-value=4.5e-05 Score=78.86 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=115.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc--
Q 005096 155 TGRRLITGS-QS-----GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNN-- 219 (715)
Q Consensus 155 dg~~Latgs-~d-----g~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~~-- 219 (715)
++.+++.|+ .+ ..+.+||..+.+....-... ......+. -++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555665 22 36889998876543322111 11112222 256677777754 468899988765
Q ss_pred -eeeeec--CCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEe
Q 005096 220 -VKANKS--AHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 220 -~~~~~~--~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs 289 (715)
-...-. ........+. -+++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 322211 1111122222 256666666543 3688999876543322 2211122223333 567777776
Q ss_pred CC-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEee--cCCC
Q 005096 290 KD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELESFR--GHRK 355 (715)
Q Consensus 290 ~D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~~~--~h~~ 355 (715)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+++.+-...-. ....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4588999887643322 1111111223333 56677777654 468999998765433221 1111
Q ss_pred CeEEEEEccCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005096 356 DVTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~~ 387 (715)
....+.+ ++.+++.|+.++ .|.+||.++.
T Consensus 246 ~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2222222 566777776553 4677777654
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.20 E-value=0.00031 Score=73.82 Aligned_cols=185 Identities=10% Similarity=0.130 Sum_probs=123.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC----CC---EEEEEEC---CCcEEEEECC-CCeeEEEe
Q 005096 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----DL---KFCSCSD---DTTVKVWDFA-RCQEERSL 266 (715)
Q Consensus 198 g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd----~~---~Las~s~---Dg~V~iwdl~-~~~~~~~l 266 (715)
..+++....++-|.+||+ .++.+..+.. ..++.+.+-++ ++ ++++... +++|.+|++. ....+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 456777777889999999 7777777643 56677766553 22 2333333 5789999873 22234444
Q ss_pred cc------cC-CceEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 267 TG------HG-WDVKSVDW--HPT-KS-LLVSGGKDSLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 267 ~~------~~-~~I~si~~--spd-g~-~L~sgs~Dg~I~iwDl~-------s~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
.. .. ..+..+|+ ++. ++ ++++...+|.+..|++. +.+.++++.. ...+..+...+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 56677887 664 44 68888889999999883 2355667663 45788888988888999
Q ss_pred EEECCCeEEEEECC-----CCeEEEEee--cCCCCeEEEEEc--cCCCCEE-EEEeCCCcEEEEEcCC
Q 005096 329 TASKDQIIKLYDIR-----AMKELESFR--GHRKDVTALAWH--PFHEEYF-VSGSLDGSIFHWLVGH 386 (715)
Q Consensus 329 sgs~dg~I~iwDl~-----t~~~~~~~~--~h~~~V~~l~~s--p~~~~~l-~sgs~DG~I~iwd~~~ 386 (715)
++-++.-|..+|.+ +.+.+..+. .....+..|++. .++..+| +++-.+.++.+||...
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 99999888888865 355665553 223478888884 3222244 4544677999999963
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.0004 Score=72.32 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=128.3
Q ss_pred CCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEE-ecc----c--CCceEEEEE---cCCCCEEEEEeC-----
Q 005096 227 HKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-LTG----H--GWDVKSVDW---HPTKSLLVSGGK----- 290 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~-l~~----~--~~~I~si~~---spdg~~L~sgs~----- 290 (715)
....-.+++|......|+.++ .+++|..||...+..... +.. . ...+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 344456788988666766666 689999999975543333 221 0 113579999 688777665442
Q ss_pred --------CCcEEEEECC---CCceeEEecc-------------CCCceEEEEEcCCCCEEEEEECC-CeEEEEECCCCe
Q 005096 291 --------DSLVKLWDAK---SGRELCSFHG-------------HKNMVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMK 345 (715)
Q Consensus 291 --------Dg~I~iwDl~---s~~~~~~~~~-------------~~~~I~sl~~spdg~~Lasgs~d-g~I~iwDl~t~~ 345 (715)
+..|..||+. +++.+....- .......++..++|+..++++.. +.|..+|... +
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~ 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-K 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-C
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-C
Confidence 6779999999 7877665531 11247899999999999988888 8888888663 3
Q ss_pred EEEEee------cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-eEEEee-c---cCCCEEEE-EEcCCCCE-
Q 005096 346 ELESFR------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-QVEIHN-V---HDNTVWDL-AWHPIGYL- 412 (715)
Q Consensus 346 ~~~~~~------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-~~~~~~-~---h~~~V~~l-~~spdg~~- 412 (715)
.+..+. ......+.|+++| ++++|++...+|.|..+|+++... .+.+.. + .-.....| ..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 333222 1223477999999 666666665599999999985332 121110 1 11223443 44446777
Q ss_pred EEEEECCCeEEEEecCC
Q 005096 413 LCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~ 429 (715)
|++.+..+.+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 55555677666666544
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.16 E-value=7.9e-06 Score=95.36 Aligned_cols=220 Identities=8% Similarity=-0.047 Sum_probs=133.5
Q ss_pred CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC----CeeEEEecccCCceEEEEEcC
Q 005096 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~----~~~~~~l~~~~~~I~si~~sp 280 (715)
....|++.++...+....+.. ...+..|+|.+.+..|+.+. .++.|+.+++.. ......+.........|+++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 345788888877665444333 34567899998777766654 457899999875 222222222223456788875
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCe
Q 005096 281 TK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 281 dg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
.+ +++++-...+.|.++|++.......+.........|++++++.+|+.+.. .+.|.++++........+...-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 44 44454456678999998855444333333345678899987666665543 2678888876332222222233456
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+.|+|+++++.++++-+..+.|.+++++..... .+... .......|++..+ .++++....+.|..++..
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 789999867778887777889999998653332 23221 1123445666543 455555566788888753
No 304
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.16 E-value=0.0026 Score=74.72 Aligned_cols=269 Identities=11% Similarity=0.073 Sum_probs=154.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
...|.++....+| .|.+|+.+| |.+||..+.+...........|.++... ++ .|.+++.+ -|..+|..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568888887776 577777766 8899988765433111123457777543 44 56666665 577888876654432
Q ss_pred e----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-----cCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 224 K----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 224 ~----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-----~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
. ......|.++....++.+.+ ++.+ -|..+|..+.+....... ....|.++....++..|.+++. +-|
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 1 11235688888877776554 5554 477888776554322111 1234888888877776666664 458
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-------cCCCCeEEEEEccCCC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHE 367 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-------~h~~~V~~l~~sp~~~ 367 (715)
..||..+++...........|.++....++.+. +|+. +-|.++|..+.+...... .....|.++.... ++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g 290 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EH 290 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CC
Confidence 889987664322211123458888888777654 4554 458888887654322211 1234588887765 44
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEe----eccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+ ..|+..| |.++............ ......|.++.-..+|.+.+ |+.+| +..++.
T Consensus 291 ~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~ 350 (758)
T 3ott_A 291 NI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTD 350 (758)
T ss_dssp CE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESC
T ss_pred CE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecc
Confidence 44 4445556 5444332211111100 01134688888887776554 45555 444543
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.15 E-value=0.0012 Score=70.08 Aligned_cols=224 Identities=10% Similarity=0.092 Sum_probs=124.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--eee---cCCCCCeEEEEEecC---CCEEEEEEC-C-----CcE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKESVRDLSFCRT---DLKFCSCSD-D-----TTV 252 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~--~~~---~~h~~~I~~l~~spd---~~~Las~s~-D-----g~V 252 (715)
..-..|+|.+++++++ +..+|.|++++ .++.. ..+ .........|+|+++ +..|+++.. + +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998555 45679999998 33321 111 122456889999998 555555543 2 678
Q ss_pred EEEECCCCe-----eE-EEec---ccCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC--------
Q 005096 253 KVWDFARCQ-----EE-RSLT---GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG-------- 302 (715)
Q Consensus 253 ~iwdl~~~~-----~~-~~l~---~~~~~I~si~~spdg~~L~sgs~-------------Dg~I~iwDl~s~-------- 302 (715)
..|++.... .+ ..+. ........|+|.+||.++++.+. .+.|..+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 11 1122 11123468999999976666432 145666665430
Q ss_pred ----ceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeE------EEEECCCCe------------------EEEEeecC
Q 005096 303 ----RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQII------KLYDIRAMK------------------ELESFRGH 353 (715)
Q Consensus 303 ----~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I------~iwDl~t~~------------------~~~~~~~h 353 (715)
.....+...-.....++|++ +++++++-.....+ .|.-+..+. .+..+ ..
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQ 266 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TT
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CC
Confidence 01111111123356789999 56655443322221 122222222 11222 12
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc------eEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
......++|. ++.++++.-..+.|...+++.... ...++ .....+.++++.+||.++++..
T Consensus 267 ~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 GFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence 2345677773 566777666677788877764432 12222 2245789999999997766654
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.15 E-value=0.011 Score=61.04 Aligned_cols=257 Identities=11% Similarity=0.098 Sum_probs=166.1
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEE
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~La 244 (715)
+..|.|.|+.+.+...+..-. ..+...+|..+.||.-. ...+.|+|+++...+....- .+.|.-=.|..+ +.|+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~ 121 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 121 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEE
T ss_pred CCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEE
Confidence 347889998886554332211 11344578888877665 68899999999987777654 456666667644 4555
Q ss_pred EEECCCcEEEEECCC-CeeEEEeccc----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeccCC
Q 005096 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~-------Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
..+ +..|+.|+++. ....+.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 199 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 199 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee
Confidence 555 44799999964 3455555543 356778888999997765542 36788999874 4456677776
Q ss_pred CceEEEEEcCC---CCEEEEEEC---CCeEEEEECCCC---e------EEEEee---cCCCCeEEEEEccCCCCEEEEEe
Q 005096 313 NMVLCVKWNQN---GNWVLTASK---DQIIKLYDIRAM---K------ELESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 313 ~~I~sl~~spd---g~~Lasgs~---dg~I~iwDl~t~---~------~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.....+.+.-+ ..+|+.+.. .++++|.++... . .+..+- ...+--.++.++. ...++..-+
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviT 278 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 278 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEe
Confidence 65544443321 123333332 258999998432 1 111111 1234456777777 677888889
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-|.|++||+.++..+..-.. ..+.|...+-+.+..=++....+|.|.--.+++..
T Consensus 279 K~G~ihlyDleTgt~i~~nrI-S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CCcEEEEEEcccCcEEEEecc-CCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 999999999999988766554 35566666665554556777789988888876544
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.13 E-value=0.0005 Score=73.14 Aligned_cols=223 Identities=9% Similarity=0.095 Sum_probs=119.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE--Ee---ccCCCEEEEEEcCC---CCEEEEEeCC------CcE
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQ---AHDHAIRSMVWSHN---DNWMVSGDDG------GAI 210 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~--l~---~h~~~V~~l~~spd---g~~L~tgs~d------g~I 210 (715)
..-..++|.+||+ |+++..+|.|++++ +++.... +. ........|+|+++ +..|+++... +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999998 55556779999998 3332221 11 12456889999998 5566554432 567
Q ss_pred EEEeCCCCce------eeeec---CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCC--------
Q 005096 211 KYWQNNMNNV------KANKS---AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC-------- 260 (715)
Q Consensus 211 ~iwd~~~~~~------~~~~~---~h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~-------- 260 (715)
..|+...... ...+. ........|+|.+|+.++++.+. .+.|..+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 7787764311 11122 11123468999999976665432 145666655420
Q ss_pred ----eeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcE------EEEECCCCc------------------eeEEeccC
Q 005096 261 ----QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV------KLWDAKSGR------------------ELCSFHGH 311 (715)
Q Consensus 261 ----~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I------~iwDl~s~~------------------~~~~~~~~ 311 (715)
.....+.........++|++ +++++++-.....+ .|.-+..+. .+..+. .
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-Q 266 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-T
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-C
Confidence 01111111123356789999 56655543332221 122222221 122222 2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------EEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE------LESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~------~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
......++| .+++++++....+.|...+++.... ...+......+..+++.+ ++.++++.
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEE
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEE
Confidence 234567777 3666665555667788777753321 122222335688888888 45555544
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.11 E-value=0.0056 Score=65.57 Aligned_cols=232 Identities=10% Similarity=0.120 Sum_probs=148.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCC-
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h- 227 (715)
.-.+|..+.||.-. ..++.|+|+++...++.+...+. |.-=.|..+ +.|+..+ +..|+-|+++.. .....+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 34566666666554 67899999999999988886554 444466544 4454443 468999998753 233333322
Q ss_pred ---CCCeEEEEEecCCCEEEEEEC-------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCC---CEEEEEeCC---
Q 005096 228 ---KESVRDLSFCRTDLKFCSCSD-------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGGKD--- 291 (715)
Q Consensus 228 ---~~~I~~l~~spd~~~Las~s~-------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg---~~L~sgs~D--- 291 (715)
...|.....+++.++++..+- .|.+.+|..+. +....+.+|......+.+.-+. ++|+.+...
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 356777777888888765432 46788998865 4556777777666555554322 245555443
Q ss_pred CcEEEEECCCC--------ceeEEe----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 292 SLVKLWDAKSG--------RELCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 292 g~I~iwDl~s~--------~~~~~~----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
+.+.|.++... +....+ +...+--.++..++.-..++..+.-|.|.+||+.++.++..-+.....|..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 78999998542 111111 112344567888888889999999999999999999999888766666655
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
-+.+. ...=+++...+|.|.-..++..
T Consensus 306 t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 306 TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 55444 3333344445565555544433
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.11 E-value=0.00011 Score=76.00 Aligned_cols=221 Identities=11% Similarity=0.079 Sum_probs=112.4
Q ss_pred CEEEEEeCC----CeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeeec
Q 005096 157 RRLITGSQS----GEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 157 ~~Latgs~d----g~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~~~~~~~~ 225 (715)
.+++.|+.+ ..+.+||..+.+....-.... ..-..+.+ ++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 345555543 458889988765443311111 11112222 56677777654 358888988765333221
Q ss_pred CCCCCe-EEEEEecCCCEEEEEECCC-----cEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeCC------
Q 005096 226 AHKESV-RDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD------ 291 (715)
Q Consensus 226 ~h~~~I-~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~D------ 291 (715)
...... .+++. -+++.++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 95 MRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred CCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence 111111 12222 2566777776543 578889876543322 1111112222333 46666766542
Q ss_pred -CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEE--eecCCCCeEEEE
Q 005096 292 -SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKDVTALA 361 (715)
Q Consensus 292 -g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~--~~~h~~~V~~l~ 361 (715)
..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+++.+-... +.........+.
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 3588999987643322 1111112222333 56777777654 4689999987654322 211111112222
Q ss_pred EccCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005096 362 WHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG-----~I~iwd~~~~ 387 (715)
+ ++.+++.|+.++ .|.+||..+.
T Consensus 250 ~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 250 V---NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E---CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 567777777553 4777777654
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.08 E-value=8.7e-06 Score=95.02 Aligned_cols=216 Identities=6% Similarity=-0.078 Sum_probs=128.3
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005096 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~ 218 (715)
..+..|+|++++..|+.+. .++.|+.+++.. ......+.........|++...+ +++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899998777776664 457899998875 22222222112234567777544 44455456688999998766
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 295 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~ 295 (715)
.....+.........|++.+.+.+|+.+.. .+.|.++++........+.......+.|+|+++++.|+++ ...+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 554444333455678899886665555443 2678888875433222222233456789999876655444 4567899
Q ss_pred EEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 005096 296 LWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (715)
Q Consensus 296 iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~ 361 (715)
++|++.......+.. .......|++..+ .++++....+.|..+|..+++.+..+.........|+
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 999874333222221 1223445566433 3444445667899999888888777654333344443
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.07 E-value=0.0025 Score=67.71 Aligned_cols=225 Identities=10% Similarity=0.062 Sum_probs=127.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeee---cCCCCCeEEEEEecC---CCEEEEEEC----C----Cc
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VKANK---SAHKESVRDLSFCRT---DLKFCSCSD----D----TT 251 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-~~~~~---~~h~~~I~~l~~spd---~~~Las~s~----D----g~ 251 (715)
.....|+|.+++++ +++..+|.|++++. .++ .+..+ .........|+++++ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45679999999874 44566799999873 333 22211 122356889999997 555555443 2 56
Q ss_pred EEEEECCCC-------eeE-EEecc-cCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 005096 252 VKVWDFARC-------QEE-RSLTG-HGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG------- 302 (715)
Q Consensus 252 V~iwdl~~~-------~~~-~~l~~-~~~~I~si~~spdg~~L~sgs~-------------Dg~I~iwDl~s~------- 302 (715)
|..|+.... +.+ ..+.. .......|+|.+||.++++.+. .+.|..+|.+..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 788887543 111 11221 1123467999999987666443 245555555421
Q ss_pred --ceeEEeccCCCceEEEEEcC-CCCEEEEEECCC---eEEEEECCCCe------------------EEEEeecCCCCeE
Q 005096 303 --RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQ---IIKLYDIRAMK------------------ELESFRGHRKDVT 358 (715)
Q Consensus 303 --~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg---~I~iwDl~t~~------------------~~~~~~~h~~~V~ 358 (715)
..+.. .++ .....++|++ +++++++-.... .|.+.. .+. .+..+........
T Consensus 187 ~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 11221 122 2356799999 566444432211 243332 221 1222211234577
Q ss_pred EEEEcc------CCCCEEEEEeCCCcEEEEEcCCCCceE---EEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 359 ALAWHP------FHEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 359 ~l~~sp------~~~~~l~sgs~DG~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
.++|.. .++.++++.-..+.|...+++...... .++......+.++++.+||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 888832 256677776667788888887543222 23322245789999999997666654
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.06 E-value=0.003 Score=67.09 Aligned_cols=228 Identities=9% Similarity=0.077 Sum_probs=125.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eEEEEe---ccCCCEEEEEEcCC---CCEEEEEeC----C----C
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQ---AHDHAIRSMVWSHN---DNWMVSGDD----G----G 208 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-~~~~l~---~h~~~V~~l~~spd---g~~L~tgs~----d----g 208 (715)
-..-..|+|.+||+ |+++..+|.|+++|. +++ .+..+. ........|+|+++ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997 556667799999973 444 111111 12356889999997 556655443 2 5
Q ss_pred cEEEEeCCCC--c---e--e-eeec-CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe-----
Q 005096 209 AIKYWQNNMN--N---V--K-ANKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ----- 261 (715)
Q Consensus 209 ~I~iwd~~~~--~---~--~-~~~~-~h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~~----- 261 (715)
.|..|+.... . . + ..+. ........|+|.+|+.++++.+. .+.|..+|.+..-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543 1 1 1 1111 11123467999999987666432 2455555543210
Q ss_pred --eEEEecccCCceEEEEEcC-CCCEEEEEeCCC---cEEEEECCC--------C--------ceeEEeccCCCceEEEE
Q 005096 262 --EERSLTGHGWDVKSVDWHP-TKSLLVSGGKDS---LVKLWDAKS--------G--------RELCSFHGHKNMVLCVK 319 (715)
Q Consensus 262 --~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg---~I~iwDl~s--------~--------~~~~~~~~~~~~I~sl~ 319 (715)
....+.........|+|++ +++++++-.... .|.+..... + ..+..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 0111111123456899999 566444432221 243332110 0 12223311234577888
Q ss_pred Ec-------CCCCEEEEEECCCeEEEEECCCC-eEE--EEee-cCCCCeEEEEEccCCCCEEEEEe
Q 005096 320 WN-------QNGNWVLTASKDQIIKLYDIRAM-KEL--ESFR-GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 320 ~s-------pdg~~Lasgs~dg~I~iwDl~t~-~~~--~~~~-~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
|. .+++++++....+.|...++... +.. ..+. .....+..|++.+ ++.++++..
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 83 46766666666778988888753 222 2232 2245688899888 455555543
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.05 E-value=0.022 Score=61.02 Aligned_cols=257 Identities=11% Similarity=0.094 Sum_probs=169.3
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEE
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~La 244 (715)
+..|.|.|+.+...+.+..-. ..+...+|..+.|+.-. ..++.|+|+++...+....-. +.|.-=.|..+ +.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEE
Confidence 347899998886554332211 12445677778777654 689999999998877776543 45666666644 4455
Q ss_pred EEECCCcEEEEECCC-CeeEEEeccc----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeccCC
Q 005096 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~-------Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
..+ +..|+.|+++. ...++.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence 544 45799999964 3455555543 356788888999997765432 36788999874 4456677777
Q ss_pred CceEEEEEcCCC---CEEEEEECC---CeEEEEECCCC--------eEEEE-ee---cCCCCeEEEEEccCCCCEEEEEe
Q 005096 313 NMVLCVKWNQNG---NWVLTASKD---QIIKLYDIRAM--------KELES-FR---GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 313 ~~I~sl~~spdg---~~Lasgs~d---g~I~iwDl~t~--------~~~~~-~~---~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.....+.+.-+. .+++.+... ++++|.++... +.... +- ...+--.++.+++ ...++...+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviT 277 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEe
Confidence 666555544321 234444432 78999998542 11111 11 1234456778887 677888889
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-|.|++||+.++..+..-.. ..+.|...+.+.+..=++....+|.|.--.+++..
T Consensus 278 K~G~i~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCceEEEEecccceeeeeecc-cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 999999999999988766553 45567666666666667777789998888886544
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.03 E-value=0.0002 Score=73.97 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=113.1
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCe----
Q 005096 197 NDNWMVSGD-DG-----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQ---- 261 (715)
Q Consensus 197 dg~~L~tgs-~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~---- 261 (715)
++.+++.|+ .+ ..+.+||..+.+-...-..........+..-++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 344555555 22 467888887765333211111111111222356667777654 468999987654
Q ss_pred -eEEEecccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 262 -EERSLTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 262 -~~~~l~~~~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
.+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+......-.++.+ ++++++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 22222222222223333 56777777643 358899988764322 22211112222232 56677777654
Q ss_pred -----CeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeec-cCCC
Q 005096 334 -----QIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 334 -----g~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||..+.......... ....
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 4689999887654332 2111112222222 56777777764 46888998765432211100 1111
Q ss_pred EEEEEEcCCCCEEEEEECC-----CeEEEEecCC
Q 005096 401 VWDLAWHPIGYLLCSGSND-----HTTKFWCRNR 429 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~ 429 (715)
...+.+ ++++++.|+.+ ..|.+||.+.
T Consensus 247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 122222 56777777765 3466676643
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.02 E-value=0.00023 Score=73.68 Aligned_cols=222 Identities=9% Similarity=0.087 Sum_probs=115.2
Q ss_pred EEEEEeC--CCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceeeeecCCCC
Q 005096 158 RLITGSQ--SGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNMNNVKANKSAHKE 229 (715)
Q Consensus 158 ~Latgs~--dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd~~~~~~~~~~~~h~~ 229 (715)
+++.|+. ...+.+||..+.+....-. .......++.+ ++++++.|+.+ ..+.+||..+++-...-.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 3578999988765443211 11112222222 56677777754 6688899887754332211111
Q ss_pred CeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC---------CC
Q 005096 230 SVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK---------DS 292 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~---------Dg 292 (715)
.....+..-++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+. ..
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence 11111122266677777654 4689999877653332 1111112222333 4666666653 34
Q ss_pred cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEE--EeecCCCCeEEEEEc
Q 005096 293 LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELE--SFRGHRKDVTALAWH 363 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~--~~~~h~~~V~~l~~s 363 (715)
.+.+||+.+.+-... +......-.++.+ ++++++.|+.+ ..|.+||+.+.+-.. .+........++.+
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 588999987643222 1111111222222 56666666543 468899998754322 22211222233333
Q ss_pred cCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005096 364 PFHEEYFVSGSLD-----GSIFHWLVGHET 388 (715)
Q Consensus 364 p~~~~~l~sgs~D-----G~I~iwd~~~~~ 388 (715)
++.+++.|+.+ ..|.+||..+..
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 66788888754 457777776643
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.97 E-value=0.008 Score=63.42 Aligned_cols=229 Identities=10% Similarity=0.109 Sum_probs=128.1
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee--e----cCCCCCeEEEEEecC---CCEEEEE-E--CCCcE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--K----SAHKESVRDLSFCRT---DLKFCSC-S--DDTTV 252 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~--~----~~h~~~I~~l~~spd---~~~Las~-s--~Dg~V 252 (715)
.-..-..|+|.+|+++|++--..|.|++++...+..... + .........|+++++ +..|++. + .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 345678999999999777765589999998655543211 1 123456789999985 4455443 2 34566
Q ss_pred EEEECCCC----------eeEE-Eec-ccCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-----
Q 005096 253 KVWDFARC----------QEER-SLT-GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG----- 302 (715)
Q Consensus 253 ~iwdl~~~----------~~~~-~l~-~~~~~I~si~~spdg~~L~sgs~-------------Dg~I~iwDl~s~----- 302 (715)
.-|.+... +.+. .+. ........|+|.+||.++++.++ .|.|.-++.+..
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66766541 1111 121 11223567999999987777543 244555554422
Q ss_pred ----ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE------------------EEEeecCCCCeEE
Q 005096 303 ----RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------------LESFRGHRKDVTA 359 (715)
Q Consensus 303 ----~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~------------------~~~~~~h~~~V~~ 359 (715)
..+.. .++. ....++|+++++++++=. .|+.-.|.-++.+.. +..+..+......
T Consensus 190 Pf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 190 PFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp SSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 11111 2333 356789999877554432 222222222222211 1222222235567
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCC---ceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
++|. ++.+++..-..+.|....++... ....++......+.+|+..+||.++++.+
T Consensus 268 ~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 7776 45666666566677666665442 12334444456789999999887666544
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.94 E-value=0.0081 Score=66.05 Aligned_cols=105 Identities=10% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--eecC------CCCCeEEEEEecC---CCEEEEEEC------
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKSA------HKESVRDLSFCRT---DLKFCSCSD------ 248 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~--~~~~------h~~~I~~l~~spd---~~~Las~s~------ 248 (715)
-.....|+|.++++++++-...+.|++++..++.... .+.. ....+..|+|+++ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999977765544578888765444322 2211 2456779999996 555555442
Q ss_pred -------CCcEEEEECCCC--e---eEEE---ec-ccCCceEEEEEcCCCCEEEEEeC
Q 005096 249 -------DTTVKVWDFARC--Q---EERS---LT-GHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 249 -------Dg~V~iwdl~~~--~---~~~~---l~-~~~~~I~si~~spdg~~L~sgs~ 290 (715)
...|..|++... + .... +. ........|+|.+||+++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 1 1111 21 11234789999999997776553
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.93 E-value=0.00058 Score=70.57 Aligned_cols=223 Identities=8% Similarity=0.013 Sum_probs=112.8
Q ss_pred CEEEEEeC--CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEE--ecccC
Q 005096 199 NWMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERS--LTGHG 270 (715)
Q Consensus 199 ~~L~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~--l~~~~ 270 (715)
.+++.|+. ...+.+||..+++-...-..........+..-++.+++.|+.+ ..+.+||+.+.+-... +....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 34455654 3578889988765432211111111111122366667777654 6788999877653322 22112
Q ss_pred CceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEEC---------C
Q 005096 271 WDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK---------D 333 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~D------g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~---------d 333 (715)
.....+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+. .
T Consensus 93 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 93 DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 22223333 56777777765 4588999987653322 1111111222222 5666666653 3
Q ss_pred CeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEe-eccCCCEEEEEE
Q 005096 334 QIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIH-NVHDNTVWDLAW 406 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~ 406 (715)
..+.+||+.+.+-...-.... ..-.+++.. ++.+++.|+.+ ..|.+||..+........ ........++.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 458899998765332211111 111222222 56777777653 357888887653221100 001112223333
Q ss_pred cCCCCEEEEEECC-----CeEEEEecCC
Q 005096 407 HPIGYLLCSGSND-----HTTKFWCRNR 429 (715)
Q Consensus 407 spdg~~L~sgs~D-----g~I~iWdl~~ 429 (715)
++++++.|+.+ ..|.+||.+.
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 67778888754 4577777644
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.91 E-value=0.00044 Score=71.36 Aligned_cols=221 Identities=12% Similarity=0.087 Sum_probs=109.3
Q ss_pred CEEEEEeCC----CcEEEEeCCCCceeeeecCCCCCe-EEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEE--e
Q 005096 199 NWMVSGDDG----GAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--L 266 (715)
Q Consensus 199 ~~L~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~--l 266 (715)
.+++.|+.+ ..+.+||..+.+-...-....... .+++. -++..++.|+.+ ..+.+||..+.+-... +
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 344555533 357788877765332211111111 12222 256666666644 3588999877643322 1
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEEC-------
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK------- 332 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg-----~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~------- 332 (715)
.........+.+ ++++++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 96 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 96 RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence 111122223333 467777777553 478889887643322 1111111222222 5666666653
Q ss_pred CCeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeecc-CCCEEEE
Q 005096 333 DQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNVH-DNTVWDL 404 (715)
Q Consensus 333 dg~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~h-~~~V~~l 404 (715)
...+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||..+........... ......+
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 24588999987654332 2211112222222 67777777754 368888887654321111000 1111122
Q ss_pred EEcCCCCEEEEEECCC-----eEEEEecCC
Q 005096 405 AWHPIGYLLCSGSNDH-----TTKFWCRNR 429 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg-----~I~iWdl~~ 429 (715)
.+ ++++++.|+.++ .|.+||.+.
T Consensus 249 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 249 AV--NGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEECCcCCCcccccEEEEcCCC
Confidence 22 567777777653 367777643
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.90 E-value=0.0047 Score=65.53 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=127.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-------cCCCCCeEEEEEecC---CCEEEEEEC--------
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-------SAHKESVRDLSFCRT---DLKFCSCSD-------- 248 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~I~~l~~spd---~~~Las~s~-------- 248 (715)
.....|+|.+++++|+++..+|.|++++.+ +.....+ .........|+++++ +..|+++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456799999999834455667999999853 2221111 112345689999996 555554432
Q ss_pred CCcEEEEECCCC----eeEE-Eecc------cCCceEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCc-
Q 005096 249 DTTVKVWDFARC----QEER-SLTG------HGWDVKSVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGR- 303 (715)
Q Consensus 249 Dg~V~iwdl~~~----~~~~-~l~~------~~~~I~si~~spdg~~L~sgs~D-------------g~I~iwDl~s~~- 303 (715)
...|..|++... .... .+.. .......|+|.+||.++++.+.. +.|.-+|.+..-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766432 1111 1211 11224679999999766554432 457667765320
Q ss_pred -----------eeEEeccCCCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeE------------------------
Q 005096 304 -----------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRAMKE------------------------ 346 (715)
Q Consensus 304 -----------~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg--~I~iwDl~t~~~------------------------ 346 (715)
....+.........++|+++...|+++.... .=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1112221223477899999433444443221 112222221111
Q ss_pred -------EEEeecCCCCeEEEEEccC------CCCEEEEEeCCCcEEEEEcCCCCceE--EEeeccCCCEEEEEEcCCCC
Q 005096 347 -------LESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQV--EIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 347 -------~~~~~~h~~~V~~l~~sp~------~~~~l~sgs~DG~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spdg~ 411 (715)
+..+. +......++|... .+.++++.-..+.|...+++...... .++......+..+++.+||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 11111 2235677787642 35677776677788888876542221 12222335799999999998
Q ss_pred EEEEEECCCeEEEEec
Q 005096 412 LLCSGSNDHTTKFWCR 427 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl 427 (715)
++++.. +..=+||.+
T Consensus 336 lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 336 LYVLTD-ESSGELLKV 350 (353)
T ss_dssp EEEEEC-STTEEEEEE
T ss_pred EEEEEe-CCCCEEEEE
Confidence 666433 223355655
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.89 E-value=0.00025 Score=73.60 Aligned_cols=222 Identities=10% Similarity=0.084 Sum_probs=113.9
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeC----C-----CcEEEEeCCCCc
Q 005096 155 TGRRLITGSQS----GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDD----G-----GAIKYWQNNMNN 219 (715)
Q Consensus 155 dg~~Latgs~d----g~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~----d-----g~I~iwd~~~~~ 219 (715)
++.+++.|+.+ ..+.+||..+.+....-... .... +++.. ++++++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 55666777632 36889998876544331111 1111 22222 5666677665 2 468888988765
Q ss_pred eeeeecCC--CCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC
Q 005096 220 VKANKSAH--KESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 220 ~~~~~~~h--~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
-...-... ......+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 33322111 111222222 56666666533 4688999877543322 1111122223333 5677777765
Q ss_pred C-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEE--eecCCCC
Q 005096 291 D-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKD 356 (715)
Q Consensus 291 D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~--~~~h~~~ 356 (715)
+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+.+.+-... +......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4588999887543221 1111112223333 56677777654 5699999987653322 1111111
Q ss_pred eEEEEEccCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~~ 387 (715)
. +++.. ++.+++.|+.++ .|.+||..+.
T Consensus 256 ~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 L-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred e-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 22222 567777776443 4666776554
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.88 E-value=0.021 Score=69.94 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=135.1
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEeCCCCc-eeeeecCCCCCeEEEEEecCCCEEEEEECC------------------
Q 005096 191 SMVWSHN--DNWMVSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDLSFCRTDLKFCSCSDD------------------ 249 (715)
Q Consensus 191 ~l~~spd--g~~L~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~spd~~~Las~s~D------------------ 249 (715)
...|+.. .+-++..+ ++.++|..++... ...........+..++++++.+.++.+..+
T Consensus 697 ~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 775 (1158)
T 3ei3_A 697 MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAS 775 (1158)
T ss_dssp EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred EeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhh
Confidence 3445432 23455444 4558888765432 222222344577788888777665443311
Q ss_pred -------------------------------CcEEEEECCCCeeEEEeccc-CCceEEEE---EcCC-CCEEEEEe----
Q 005096 250 -------------------------------TTVKVWDFARCQEERSLTGH-GWDVKSVD---WHPT-KSLLVSGG---- 289 (715)
Q Consensus 250 -------------------------------g~V~iwdl~~~~~~~~l~~~-~~~I~si~---~spd-g~~L~sgs---- 289 (715)
+.|+++|-.+.+.+..+.-. ...+.+++ |..+ ..+|++|+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~ 855 (1158)
T 3ei3_A 776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVY 855 (1158)
T ss_dssp HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecC
Confidence 23666676666655544322 22344444 4333 46888876
Q ss_pred ------CCCcEEEEECCCCceeEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeE--E
Q 005096 290 ------KDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVT--A 359 (715)
Q Consensus 290 ------~Dg~I~iwDl~s~~~~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~--~ 359 (715)
..|.|++|++..++..... +..++.+++++-- +| +|+++- ..+|+|||+...+.+. ...... .|. .
T Consensus 856 ~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~ 931 (1158)
T 3ei3_A 856 PEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALY 931 (1158)
T ss_dssp TTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEE
T ss_pred CCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEE
Confidence 3478999998744322111 2346778888744 35 455543 5789999998665444 111122 233 4
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.. .+++|++|+.-..|.++.++......... ......++++.+-.+ ..++.+..+|.|.+...+...
T Consensus 932 l~~---~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 932 LKT---KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp EEE---ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTC
T ss_pred Eec---cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCC
Confidence 433 46788888887788777665443333332 234567888888755 467889999999999887643
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.86 E-value=0.0043 Score=65.84 Aligned_cols=226 Identities=10% Similarity=0.094 Sum_probs=122.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-------eccCCCEEEEEEcCC---CCEEEEEe-C-------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHN---DNWMVSGD-D------- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-------~~h~~~V~~l~~spd---g~~L~tgs-~------- 206 (715)
..-..|+|.++|++|+++..+|.|++++.. ++....+ .........|+|+++ +.+|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356899999999845566678999999853 2221111 122346789999996 55555443 2
Q ss_pred CCcEEEEeCCCC-----ceeeeecC------CCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe-
Q 005096 207 GGAIKYWQNNMN-----NVKANKSA------HKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ- 261 (715)
Q Consensus 207 dg~I~iwd~~~~-----~~~~~~~~------h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~~- 261 (715)
...|..|+++.. .....+.. .......|+|.+|+.++++.+. .++|..+|.+...
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 234666665432 11111111 1122467999999965555433 2457667654320
Q ss_pred -----------eEEEecccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCc-------------------------
Q 005096 262 -----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGR------------------------- 303 (715)
Q Consensus 262 -----------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg--~I~iwDl~s~~------------------------- 303 (715)
....+.........++|+++...|+++.... .=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1112221223467899999444444443321 11222121111
Q ss_pred ------eeEEeccCCCceEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeEEEE--e-ecCCCCeEEEEEccCCC
Q 005096 304 ------ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES--F-RGHRKDVTALAWHPFHE 367 (715)
Q Consensus 304 ------~~~~~~~~~~~I~sl~~sp-------dg~~Lasgs~dg~I~iwDl~t~~~~~~--~-~~h~~~V~~l~~sp~~~ 367 (715)
.+..+. +......++|.. +++++++....+.|...+++.++.+.. + ......+..|++.+ ++
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG 334 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DG 334 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TS
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CC
Confidence 111222 223466777753 466666666778888888876654433 2 22345788999998 55
Q ss_pred CEEEEE
Q 005096 368 EYFVSG 373 (715)
Q Consensus 368 ~~l~sg 373 (715)
.++++.
T Consensus 335 ~lyv~t 340 (353)
T 2g8s_A 335 YLYVLT 340 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 655543
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.82 E-value=0.0012 Score=68.67 Aligned_cols=208 Identities=10% Similarity=0.064 Sum_probs=104.5
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeC-----C------CcEEEEeCCCCceeeeecC
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD-----G------GAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~-----d------g~I~iwd~~~~~~~~~~~~ 226 (715)
++.|+ ..+.+||..+.+-...- ..........+...++++++.|+. . ..+.+||..+.+-...-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44555 56999999887754311 111122223333447778888773 1 1267788877653322111
Q ss_pred CCCCe-EEEEEecCCCEEEEEECC--------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC-C---
Q 005096 227 HKESV-RDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK-D--- 291 (715)
Q Consensus 227 h~~~I-~~l~~spd~~~Las~s~D--------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~-D--- 291 (715)
..... .+++.. +++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+. +
T Consensus 86 p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRK 162 (315)
T ss_dssp SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSC
T ss_pred CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCc
Confidence 11111 112222 55666666632 4589999977543221 1111122222332 4667777765 2
Q ss_pred --CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEee--cCCCCeEEE
Q 005096 292 --SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR--GHRKDVTAL 360 (715)
Q Consensus 292 --g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~--~h~~~V~~l 360 (715)
..+.+||+.+.+-... +........++.+ ++++++.|+.++ .+.+||+.+.+-...-. ........+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 4689999887542221 1111111222333 567777777554 58899998764333221 111122222
Q ss_pred EEccCCCCEEEEEeCC
Q 005096 361 AWHPFHEEYFVSGSLD 376 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~D 376 (715)
.+ ++.+++.|+.+
T Consensus 241 ~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 241 SL---VGTLYAIGGFA 253 (315)
T ss_dssp EE---TTEEEEEEEEE
T ss_pred EE---CCEEEEECCcc
Confidence 22 56777777653
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.79 E-value=0.0086 Score=62.04 Aligned_cols=233 Identities=6% Similarity=0.006 Sum_probs=126.7
Q ss_pred CCCCEEEEEeC--CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEEeCCC
Q 005096 154 PTGRRLITGSQ--SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------------GAIKYWQNNM 217 (715)
Q Consensus 154 pdg~~Latgs~--dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--------------g~I~iwd~~~ 217 (715)
.++.+|+.... ++.|+..+.+..+..+.... . +--++.++++|+.+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC---c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 46777776642 56677777665444433321 1 33456788888766442 3567777776
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEE----CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCS----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS 292 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s----~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg 292 (715)
.+...... .. +..|+.++++|+-.. .+..|+..+++... ...+..+.. .+|+++++.|+..+. ..
T Consensus 98 ~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65333221 11 235677888888776 34456666665433 333433322 345667887776665 56
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
.|.+.++..+.....+.+ ... ..++|++++|+....+ ..|..-++.... ...+. ...+.. |++ ++.+|
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~~~--~~~-~g~~I 237 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANIEH--YNV-YGSLI 237 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCEEE--EEE-ETTEE
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCcce--EEE-CCCEE
Confidence 788888876654444432 222 3356889998877644 367676776443 33332 223333 556 45555
Q ss_pred EEEeC--CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 371 VSGSL--DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 371 ~sgs~--DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
+-++. .+.|..-+++.... ..+... .+..+.. .+.+|+-..
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~~i~i--~~d~Iy~td 280 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGF-KELAKG---EFCNINV--TSQYVYFTD 280 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCC-EEEEES---CEEEEEE--CSSEEEEEE
T ss_pred EEEECCCCcEEEEEECCCCcc-EEeeCC---ccceEEE--eCCEEEEEE
Confidence 54432 34555555544332 233321 3444444 445555444
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.77 E-value=0.016 Score=61.24 Aligned_cols=202 Identities=9% Similarity=0.103 Sum_probs=117.4
Q ss_pred cEEEEEEcCCCCEEEEE------------eCCCeEEEEeCCCC--ceE-EEEec-----cCCCEEEEEEcC--CCC-EEE
Q 005096 146 SINRVLWTPTGRRLITG------------SQSGEFTLWNGQSF--NFE-MILQA-----HDHAIRSMVWSH--NDN-WMV 202 (715)
Q Consensus 146 ~I~~l~~spdg~~Latg------------s~dg~I~Iwd~~~~--~~~-~~l~~-----h~~~V~~l~~sp--dg~-~L~ 202 (715)
..-.|++.++|..++++ ..+|.|.++|.++. +.. ..+.+ .......|.+.. +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566678887544443 16899999998742 221 12222 224677777755 343 454
Q ss_pred EEe-C--CCcEEEEeCCCCc----eeeeecC-CCCCeEEEEEecCCCEEEEEEC-----------------CCcEEEEEC
Q 005096 203 SGD-D--GGAIKYWQNNMNN----VKANKSA-HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDF 257 (715)
Q Consensus 203 tgs-~--dg~I~iwd~~~~~----~~~~~~~-h~~~I~~l~~spd~~~Las~s~-----------------Dg~V~iwdl 257 (715)
++. . +..|.||+++... .+..+.. .-...+++++.+++.++++... .|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 442 2 4678888766532 1222222 2346789999999987776541 244555554
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--eEEeccCCCceEEEEEcC-CCCEEEEEEC
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASK 332 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s-~~~--~~~~~~~~~~I~sl~~sp-dg~~Lasgs~ 332 (715)
++ +..+...-..-+.|+|++|++.|+++. ..+.|..||++. ++. ...+ ........+++.. +|++.+++..
T Consensus 211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 32 222222334568999999998777665 567899999863 322 1233 2345678899998 5987776654
Q ss_pred C-CeEEEEECC--CCeEEEEee
Q 005096 333 D-QIIKLYDIR--AMKELESFR 351 (715)
Q Consensus 333 d-g~I~iwDl~--t~~~~~~~~ 351 (715)
+ +.|..||-. .+..+..+.
T Consensus 287 ~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 287 NGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CHHHHHSCCTTSCCCEEEEEEE
T ss_pred CceEEEEECCCCCCCCEEEEEE
Confidence 4 344444443 244444443
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.69 E-value=0.038 Score=58.24 Aligned_cols=227 Identities=10% Similarity=0.108 Sum_probs=123.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE------eccCCCEEEEEEcCC---CCEEEEE---eCCCcE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHN---DNWMVSG---DDGGAI 210 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l------~~h~~~V~~l~~spd---g~~L~tg---s~dg~I 210 (715)
.-..-..|+|.+||++|++-...|.|++++..+++..... .........|+|+++ +.+|++. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 3456789999999987666655899999987655543221 123466889999985 4455443 234556
Q ss_pred EEEeCCCC--------ceee---eec-CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe----
Q 005096 211 KYWQNNMN--------NVKA---NKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ---- 261 (715)
Q Consensus 211 ~iwd~~~~--------~~~~---~~~-~h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~~---- 261 (715)
.-|.+..+ +... .+. ........|+|.+|+.++++.++ .|.|.-++.+..-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 55655431 1111 111 11223467999999987776543 3555555553220
Q ss_pred ---eEEEe-cccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------------eeEEeccCCCceEEE
Q 005096 262 ---EERSL-TGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGR------------------ELCSFHGHKNMVLCV 318 (715)
Q Consensus 262 ---~~~~l-~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~------------------~~~~~~~~~~~I~sl 318 (715)
....+ .++ .....++|++++.++++-. .|+.-.|.-++.+. .+..+..+......+
T Consensus 190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 01122 233 3456899999877555432 22222222222221 122222222345667
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeE----EEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t~~~----~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
+|. ++..++..-..+.|....++.... ...+.+....+..|+..+ ++.++++
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~ 324 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLV 324 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEE
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEE
Confidence 776 455555555566777677665432 222333346788888887 4444443
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.68 E-value=0.001 Score=68.88 Aligned_cols=222 Identities=10% Similarity=0.010 Sum_probs=109.3
Q ss_pred CCCEEEEEeC----CCcEEEEeCCCCceeeeecCCCCCe-EEEEEecCCCEEEEEEC----C-----CcEEEEECCCCee
Q 005096 197 NDNWMVSGDD----GGAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSD----D-----TTVKVWDFARCQE 262 (715)
Q Consensus 197 dg~~L~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~----D-----g~V~iwdl~~~~~ 262 (715)
++.+++.|+. -..+.+||..+.+-...-....... .+++. -++.+++.|+. + ..+.+||+.+.+-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 4555566653 2457888877765333211111111 12222 25666666654 2 4688999877643
Q ss_pred EEE--ecccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC
Q 005096 263 ERS--LTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 263 ~~~--l~~~~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 322 1111122223333 56777776643 3588999887543221 1111112223333 56666776654
Q ss_pred -----CeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeec-cCCC
Q 005096 334 -----QIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 334 -----g~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||+.+.......... ....
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4689999887653322 1111112222232 66777777654 46888998765322111000 0111
Q ss_pred EEEEEEcCCCCEEEEEECC-----CeEEEEecC
Q 005096 401 VWDLAWHPIGYLLCSGSND-----HTTKFWCRN 428 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~D-----g~I~iWdl~ 428 (715)
...+.+ ++++++.|+.+ ..|.+||.+
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCC
Confidence 122222 56777777654 345666654
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.68 E-value=0.0027 Score=67.26 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=101.5
Q ss_pred CCCcEEEEeCCCC--cee-eeecC-----CCCCeEEEEEec--CCC-EEEEEEC---CCcEEEEECCCC--ee--EEEec
Q 005096 206 DGGAIKYWQNNMN--NVK-ANKSA-----HKESVRDLSFCR--TDL-KFCSCSD---DTTVKVWDFARC--QE--ERSLT 267 (715)
Q Consensus 206 ~dg~I~iwd~~~~--~~~-~~~~~-----h~~~I~~l~~sp--d~~-~Las~s~---Dg~V~iwdl~~~--~~--~~~l~ 267 (715)
.+|.|.++|.++. +.. ..+.+ ..-....|.+.. ++. +|+++.. +.+|.+|+++.. .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998742 211 11121 223566777765 343 4555533 467888877542 21 22333
Q ss_pred cc-CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 268 GH-GWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 268 ~~-~~~I~si~~spdg~~L~sgs~-----------------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
+. -...+++++.++|.++++... .|.|+.||. ++ +..+...-..-+.|+|++|+++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 22 245789999999987776541 244555554 33 2233323345789999999998887
Q ss_pred EE-CCCeEEEEECCC-CeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCC-CcEEEEE
Q 005096 330 AS-KDQIIKLYDIRA-MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWL 383 (715)
Q Consensus 330 gs-~dg~I~iwDl~t-~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-G~I~iwd 383 (715)
+. ..+.|+.||+.. ++. ...+ ........+++...++++++++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 76 567999999863 322 2333 2345667888876336777766544 3444444
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.64 E-value=0.0032 Score=65.38 Aligned_cols=202 Identities=12% Similarity=0.124 Sum_probs=98.3
Q ss_pred eEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeC----CC-------cEEEEeCCCCceeeeecCCCC-CeEE
Q 005096 167 EFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD----GG-------AIKYWQNNMNNVKANKSAHKE-SVRD 233 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~----dg-------~I~iwd~~~~~~~~~~~~h~~-~I~~ 233 (715)
.+.+||..+.+....- ..........+...++++++.|+. ++ .+.+||..+.+-...-..... .-.+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 3889998887654421 111112222233456778888873 12 167788776654332111111 1112
Q ss_pred EEEecCCCEEEEEECC-------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 005096 234 LSFCRTDLKFCSCSDD-------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWD 298 (715)
Q Consensus 234 l~~spd~~~Las~s~D-------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~------Dg~I~iwD 298 (715)
++.. +++.++.|+.+ ..+.+||+.+.+-... +........++. -++++++.|+. ...+.+||
T Consensus 105 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 105 LGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp EEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred eEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEc
Confidence 2222 56667777653 3588889876543322 111111112222 25667777654 23589999
Q ss_pred CCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEE--EEeecCCCCeEEEEEccCCCCE
Q 005096 299 AKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 299 l~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~--~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+++.+-. ..+.........+.+ ++.+
T Consensus 182 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i 256 (318)
T 2woz_A 182 PKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL---AGSL 256 (318)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE---TTEE
T ss_pred CCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE---CCEE
Confidence 987643222 1111111222332 56777777643 35778998765432 222211112222222 5677
Q ss_pred EEEEeCC
Q 005096 370 FVSGSLD 376 (715)
Q Consensus 370 l~sgs~D 376 (715)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7776643
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.58 E-value=0.04 Score=60.50 Aligned_cols=104 Identities=12% Similarity=0.203 Sum_probs=62.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec--------cCCCEEEEEEcCC---CCEEEEEeC-------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHN---DNWMVSGDD------- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spd---g~~L~tgs~------- 206 (715)
..-.+|+|.+||+++++-...+.|++++..+++....... ....+..|+|+++ +.+|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4567999999998666654445799998665544332211 2456789999996 556654432
Q ss_pred ------CCcEEEEeCCCC--c---eeee---ec-CCCCCeEEEEEecCCCEEEEEEC
Q 005096 207 ------GGAIKYWQNNMN--N---VKAN---KS-AHKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 207 ------dg~I~iwd~~~~--~---~~~~---~~-~h~~~I~~l~~spd~~~Las~s~ 248 (715)
...|.-|+++.. . .... +. ........|+|.+|+.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554321 1 1111 11 12234788999999987776553
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.53 E-value=0.0013 Score=69.66 Aligned_cols=233 Identities=10% Similarity=0.029 Sum_probs=112.3
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC--CceEEE--Ee-ccCCCEEEEEEcCCCCEEEEEeC-C---------CcEEEEeCCCC
Q 005096 155 TGRRLITGSQ-SGEFTLWNGQS--FNFEMI--LQ-AHDHAIRSMVWSHNDNWMVSGDD-G---------GAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs~-dg~I~Iwd~~~--~~~~~~--l~-~h~~~V~~l~~spdg~~L~tgs~-d---------g~I~iwd~~~~ 218 (715)
++++++.|+. ...+.+||..+ .+.... +. .......++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666666654 34688999864 222221 11 11111222222 5666677765 2 46888998876
Q ss_pred ceeeeecCC-CCCeEEEEEecCCCEEEEEECC---------------------------------------CcEEEEECC
Q 005096 219 NVKANKSAH-KESVRDLSFCRTDLKFCSCSDD---------------------------------------TTVKVWDFA 258 (715)
Q Consensus 219 ~~~~~~~~h-~~~I~~l~~spd~~~Las~s~D---------------------------------------g~V~iwdl~ 258 (715)
+-....... .......+..-++++++.|+.+ ..|.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 543322211 1111222222467777777754 578999987
Q ss_pred CCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC------CCcEEEEEC--CCCcee--EEeccCCCceEEEEEcCCCCE
Q 005096 259 RCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDA--KSGREL--CSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 259 ~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~------Dg~I~iwDl--~s~~~~--~~~~~~~~~I~sl~~spdg~~ 326 (715)
+.+-... +......-.+++.. ++++++.|+. ...+.+||+ ++.+-. ..+........+.+..-++++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence 7543322 22111111233333 4666666653 345777887 333211 111111111111112225666
Q ss_pred EEEEECC----------------------CeEEEEECCCC--eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC-----
Q 005096 327 VLTASKD----------------------QIIKLYDIRAM--KELESFRGHRKDVTALAWHPFHEEYFVSGSLDG----- 377 (715)
Q Consensus 327 Lasgs~d----------------------g~I~iwDl~t~--~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG----- 377 (715)
++.|+.+ ..+.+||+++. +.+..+......-.++.+ ++.+++.|+.++
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAV 332 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEE
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEe
Confidence 6666532 25778998754 344443332222233332 677888887543
Q ss_pred -cEEEEEcCCCCceEEE
Q 005096 378 -SIFHWLVGHETPQVEI 393 (715)
Q Consensus 378 -~I~iwd~~~~~~~~~~ 393 (715)
.|.++++++++.....
T Consensus 333 ~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEC-CCSCEEEC
T ss_pred eeEEEEEEcCcEeEeee
Confidence 3555677766654443
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.49 E-value=0.012 Score=61.02 Aligned_cols=215 Identities=7% Similarity=0.019 Sum_probs=115.1
Q ss_pred CCCCEEEEEe--CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC--------------CcEEEEECCC
Q 005096 196 HNDNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--------------TTVKVWDFAR 259 (715)
Q Consensus 196 pdg~~L~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D--------------g~V~iwdl~~ 259 (715)
.++++|+... .++.|...+.+....... .. .. +--++.++++|+-+..+ ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l-~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKL-SN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEE-EE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEc-cC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3566665543 245565555544432222 21 11 23456788887766543 3677777766
Q ss_pred CeeEEEecccCCceEEEEEcCCCCEEEEEe--C--CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC-CC
Q 005096 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--K--DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQ 334 (715)
Q Consensus 260 ~~~~~~l~~~~~~I~si~~spdg~~L~sgs--~--Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~-dg 334 (715)
.+...... .. +..|+++++.|+... . +..|+..+++... ...+..+.. ..|+++++.|+..+. +.
T Consensus 98 ~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 54333222 11 235666788888776 2 3456666776433 334433322 456678888887765 57
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC-cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG-SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 335 ~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
.|.+.++..+.....+. .... ..++| ++.+|+-... ++ .|..-+++... ...+. ...+. .|++++..
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt--~~~~~--~~~~~g~~ 236 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPN--PVVLT--EANIE--HYNVYGSL 236 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCC--CEECS--CSCEE--EEEEETTE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCC--eEEEe--CCCcc--eEEECCCE
Confidence 88888987665444333 2222 34557 4445444443 32 45444554433 23332 23343 36777888
Q ss_pred EEEEECCCeEEEEecCCCCCcccc
Q 005096 413 LCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
|+.++..+.-.|+.++.++...+.
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~ 260 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKE 260 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEE
T ss_pred EEEEECCCCcEEEEEECCCCccEE
Confidence 876644333456666665654433
No 334
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=97.48 E-value=0.12 Score=55.42 Aligned_cols=268 Identities=12% Similarity=0.114 Sum_probs=140.1
Q ss_pred CCEEEEEeCCCeEEEEeCCC--------CceEEE---Eec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----
Q 005096 156 GRRLITGSQSGEFTLWNGQS--------FNFEMI---LQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----- 218 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~--------~~~~~~---l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----- 218 (715)
.+.++.-..||+|+.|=... ...... +.. ....|..|+. .....+.-..||.|..|-.+..
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 34566667778888884222 111111 111 1224555543 3455556678899999954321
Q ss_pred ---c---eeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----------eeEEEecc-cCCceEEEEEc
Q 005096 219 ---N---VKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----------QEERSLTG-HGWDVKSVDWH 279 (715)
Q Consensus 219 ---~---~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-----------~~~~~l~~-~~~~I~si~~s 279 (715)
+ ....+. .....+..++++....+.+..+.||.|+.|-.+.. .....+.. ....|..|+..
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 0 111111 12334556677767778888889999999965321 11122222 12356677665
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c----------eeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~-~----------~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--- 344 (715)
....++...||.|+.|-.... + ....+.. ....|..|+......+.++...||.|+.|-....
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 445566678899999965321 1 0111111 2335677766543456777778999999964321
Q ss_pred --------eEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC--------ce---EEEeeccCCCEEEE
Q 005096 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------PQ---VEIHNVHDNTVWDL 404 (715)
Q Consensus 345 --------~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--------~~---~~~~~~h~~~V~~l 404 (715)
.....+.. ....|..|+. +....++-..||.|+.|-.+... .. ..+.......|..|
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~i 322 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAI 322 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEE
Confidence 11112221 2234666665 45566666889999999664311 11 11111122356666
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 405 AWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.. ....+....||.|+.|-.+..+.
T Consensus 323 a~G--~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 323 ATG--SLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp EEC--SSEEEEEETTCCEEEEECCTTST
T ss_pred Eec--cCeEEEECCCCCEEEeeCCCCCc
Confidence 654 44566678899999998876554
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.47 E-value=0.004 Score=64.58 Aligned_cols=189 Identities=9% Similarity=0.027 Sum_probs=96.4
Q ss_pred EEcCCCCEEEEEeC-----C------CeEEEEeCCCCceEEEEeccCC--CEEEEEEcCCCCEEEEEeCC--------Cc
Q 005096 151 LWTPTGRRLITGSQ-----S------GEFTLWNGQSFNFEMILQAHDH--AIRSMVWSHNDNWMVSGDDG--------GA 209 (715)
Q Consensus 151 ~~spdg~~Latgs~-----d------g~I~Iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~L~tgs~d--------g~ 209 (715)
+..-++++++.|+. . ..+.+||..+.+....-..... ....+.+ ++++++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 33457778888873 1 2377888887654332111111 1112222 56666777632 45
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-C-----CcEEEEECCCCeeEEE--ecccCCceEEEEEcCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPT 281 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-D-----g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spd 281 (715)
+.+||..+.+-...-..........+..-+++.++.|+. + ..+.+||+.+.+-... +........++.+ +
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 196 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D 196 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C
Confidence 888998876533222111111111122235666677665 2 4689999877543322 1111112223333 5
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCceeEEe--ccCCCceEEEEEcCCCCEEEEEECC--------------CeEEEEE
Q 005096 282 KSLLVSGGKDS-----LVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYD 340 (715)
Q Consensus 282 g~~L~sgs~Dg-----~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~d--------------g~I~iwD 340 (715)
+++++.|+.++ .+.+||+++.+-...- ........++.+ ++++++.|+.+ ..|.+||
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd 274 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYN 274 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEec
Confidence 67777777654 4888999876433221 111112223333 56677777653 2366778
Q ss_pred CCCCe
Q 005096 341 IRAMK 345 (715)
Q Consensus 341 l~t~~ 345 (715)
+++.+
T Consensus 275 ~~~~~ 279 (315)
T 4asc_A 275 EEEKK 279 (315)
T ss_dssp TTTTE
T ss_pred CCCCh
Confidence 77654
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0019 Score=67.86 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=109.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEE---cCCCCEEEEE-eCCCcEEEEeCCCCceeeeecC----C
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVW---SHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSA----H 227 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~---spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~----h 227 (715)
.++++++.||.|+-+|.++++..-.+.... ..+....- ..++..++.. +.||.|..++.+++..+..+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 378999999999999999999988887641 12211110 0122333333 5899999999887754433321 1
Q ss_pred CCCeEE---EEE-----ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-------ceEEEEEc-----CCCCEEEE
Q 005096 228 KESVRD---LSF-----CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWH-----PTKSLLVS 287 (715)
Q Consensus 228 ~~~I~~---l~~-----spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-------~I~si~~s-----pdg~~L~s 287 (715)
...+.. ..+ ...+..+++++.++++...|+.+++.+..+..... ...|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111211 000 01456789999999999999999999988864321 01111111 12456777
Q ss_pred EeCCCcEEEEECCCCceeEEec-----cCCCc--e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 288 GGKDSLVKLWDAKSGRELCSFH-----GHKNM--V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~-----~~~~~--I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+..+..|.+.+ ++++ +..++ ..... + .+-..+.|+.+ ++++.||.|..+|.++++.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777 4453 22211 00000 0 00001224565 557889999999999998876
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.39 E-value=0.0035 Score=66.22 Aligned_cols=216 Identities=11% Similarity=-0.029 Sum_probs=100.2
Q ss_pred CCCEEEEEeC-CCcEEEEeCCC-CceeeeecCCC--CCe-EEEEEecCCCEEEEEEC-C---------CcEEEEECCCCe
Q 005096 197 NDNWMVSGDD-GGAIKYWQNNM-NNVKANKSAHK--ESV-RDLSFCRTDLKFCSCSD-D---------TTVKVWDFARCQ 261 (715)
Q Consensus 197 dg~~L~tgs~-dg~I~iwd~~~-~~~~~~~~~h~--~~I-~~l~~spd~~~Las~s~-D---------g~V~iwdl~~~~ 261 (715)
++++++.|+. ...+.+||..+ ......+.... ... .+++. -++++++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4555566553 34688888764 11122221111 111 12222 25666666654 2 468899987764
Q ss_pred eEEEe--c-ccCCceEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 005096 262 EERSL--T-GHGWDVKSVDWHPTKSLLVSGGKD---------------------------------------SLVKLWDA 299 (715)
Q Consensus 262 ~~~~l--~-~~~~~I~si~~spdg~~L~sgs~D---------------------------------------g~I~iwDl 299 (715)
-...- . .......++. -++++++.|+.+ ..+.+||+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 33221 1 1111222233 357778888754 57889999
Q ss_pred CCCceeEE--eccCCCceEEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCe--EEEEeecCCCCeE-EEEEccCC
Q 005096 300 KSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK------DQIIKLYDI--RAMK--ELESFRGHRKDVT-ALAWHPFH 366 (715)
Q Consensus 300 ~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~------dg~I~iwDl--~t~~--~~~~~~~h~~~V~-~l~~sp~~ 366 (715)
.+.+-... +......-.+++.. ++++++.|+. ...+.+||+ .+.+ .+..+........ +++.. +
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~ 252 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--N 252 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE--T
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE--C
Confidence 87643322 22111111223322 5566666553 345777887 3322 2222211111111 12222 5
Q ss_pred CCEEEEEeCC----------------------CcEEEEEcCCCCceEEEe-eccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 367 EEYFVSGSLD----------------------GSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 367 ~~~l~sgs~D----------------------G~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+.+++.|+.+ ..+.+||..+......-. ......-.++ .-++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCC
Confidence 6777777632 247788887654332211 1111111222 23677888888653
No 338
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=97.35 E-value=0.078 Score=56.67 Aligned_cols=261 Identities=10% Similarity=-0.025 Sum_probs=124.7
Q ss_pred CEEEEEeCCCeEEEEeCCC-CceEEEE--eccCCCEEEEEEcC-CCCEEEEEeCCC----cEEEEeCCCCceeeeecC--
Q 005096 157 RRLITGSQSGEFTLWNGQS-FNFEMIL--QAHDHAIRSMVWSH-NDNWMVSGDDGG----AIKYWQNNMNNVKANKSA-- 226 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~-~~~~~~l--~~h~~~V~~l~~sp-dg~~L~tgs~dg----~I~iwd~~~~~~~~~~~~-- 226 (715)
..|++|+..| +.+++... ++.-..+ ......|.+|++.+ +...|+++...| .|...+ +.++....+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 4677888877 55554332 2211111 12346799999998 333444444444 343332 22221111110
Q ss_pred ------------CCCCeEEEEEec-C-CCEEEEEECCCcEEEEECCCCeeEEEecc-------------------cCCce
Q 005096 227 ------------HKESVRDLSFCR-T-DLKFCSCSDDTTVKVWDFARCQEERSLTG-------------------HGWDV 273 (715)
Q Consensus 227 ------------h~~~I~~l~~sp-d-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-------------------~~~~I 273 (715)
....|.+|++.+ + ...|++++..+.|...+- .++.-..+.. ....|
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112577888876 2 455666665665555432 2222122210 12357
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEeccC-------------CCceEEEEEcCC-CCEEEEEECCCeEEE
Q 005096 274 KSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGH-------------KNMVLCVKWNQN-GNWVLTASKDQIIKL 338 (715)
Q Consensus 274 ~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-------------~~~I~sl~~spd-g~~Lasgs~dg~I~i 338 (715)
.+|.+++. .+.|+++..++.|...+ +.++.-..+... ...+.+|.++++ ...|++++..+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 89999873 34455555445444432 223332222110 134889999885 46677776544 544
Q ss_pred EECCCCeEEEEeec--CC---CCeEEEEEccCCCCEEEEEeC-----------CCcEEEEEcCCCCceEEEe-eccC--C
Q 005096 339 YDIRAMKELESFRG--HR---KDVTALAWHPFHEEYFVSGSL-----------DGSIFHWLVGHETPQVEIH-NVHD--N 399 (715)
Q Consensus 339 wDl~t~~~~~~~~~--h~---~~V~~l~~sp~~~~~l~sgs~-----------DG~I~iwd~~~~~~~~~~~-~~h~--~ 399 (715)
.+- .++.-..+.. .. ..+.+|++++.+...|+++.. ++...||............ ..-. .
T Consensus 258 s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~ 336 (394)
T 3b7f_A 258 MDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQ 336 (394)
T ss_dssp EET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSS
T ss_pred eCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCcc
Confidence 442 2332222221 11 345678887655454544432 3334566554433322222 1111 0
Q ss_pred -----CEEEEEEcCC-CCEEEEEECCCeEE
Q 005096 400 -----TVWDLAWHPI-GYLLCSGSNDHTTK 423 (715)
Q Consensus 400 -----~V~~l~~spd-g~~L~sgs~Dg~I~ 423 (715)
....+++++. ...|+.++.++.|.
T Consensus 337 ~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 337 AWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred ccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 1135777764 34466666565543
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.25 E-value=0.0087 Score=62.05 Aligned_cols=189 Identities=10% Similarity=0.066 Sum_probs=93.6
Q ss_pred EcCCCCEEEEEeC----CC-------eEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCC-------CcEE
Q 005096 152 WTPTGRRLITGSQ----SG-------EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-------GAIK 211 (715)
Q Consensus 152 ~spdg~~Latgs~----dg-------~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~d-------g~I~ 211 (715)
...++++++.|+. ++ .+.+||..+.+....-... ......+.+ ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456777778873 12 2778888776544321111 111122222 56677777654 3477
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCC
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~ 283 (715)
+||..+.+-...-..........+..-++++++.|+. ...+.+||+.+.+-... +........++.+ +++
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK 208 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE
Confidence 8888776543321111111111112235666666653 24589999977643322 1111112223333 467
Q ss_pred EEEEEeCC-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 005096 284 LLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIR 342 (715)
Q Consensus 284 ~L~sgs~D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d--------------g~I~iwDl~ 342 (715)
+++.|+.+ ..+.+||+++.+-... +........++.+ ++++++.|+.+ ..|.+||++
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence 77777643 3477899887643221 1111111222222 45666666543 356777777
Q ss_pred CCeE
Q 005096 343 AMKE 346 (715)
Q Consensus 343 t~~~ 346 (715)
+.+-
T Consensus 287 ~~~W 290 (318)
T 2woz_A 287 KKEW 290 (318)
T ss_dssp TTEE
T ss_pred CCEe
Confidence 6543
No 340
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.24 E-value=0.018 Score=58.89 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=121.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
..|..|+.... ..++. . ||.|+.|-.+....+..-......|..|+...+. .++. . ||.|+.|-.+....+-.-
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 35666665432 22333 4 8999999755432211111223467777665332 2333 5 899999987543222111
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
......|..|+...+ ..++.. ||.|+.|-......+-.-......|..|+...+ ..++-. ||.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence 112346888877643 333344 899999976542222111122345777765433 333334 79999997654322
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+..-......|..|+.. ....+.- .||.|+.|-.+....+-. .......|..|+...+. .++. . ||.|+.|-
T Consensus 172 lg~p~~~~~~v~~i~~G---~~hs~al-~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG 243 (282)
T 3qhy_B 172 TTVPAEAQSGVDDVAGG---IFHSLAL-KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY-SLAL-K-NGKVIAWG 243 (282)
T ss_dssp TSCCGGGGSSEEEEEEC---SSEEEEE-ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC-EEEE-E-TTEEEEES
T ss_pred CCCceecCCCeEEEEec---CCEEEEE-ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCE-EEEE-E-CCEEEEec
Confidence 22111223567777764 3333333 599999997655433211 11123457777765433 3333 3 99999998
Q ss_pred cCCCCC
Q 005096 427 RNRPGD 432 (715)
Q Consensus 427 l~~~~~ 432 (715)
.+..+.
T Consensus 244 ~n~~gq 249 (282)
T 3qhy_B 244 SSRTAP 249 (282)
T ss_dssp TTCCCC
T ss_pred CCCCcc
Confidence 776544
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0052 Score=64.61 Aligned_cols=146 Identities=7% Similarity=0.042 Sum_probs=87.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCC-CCeEEEEEe--cCCCEEEEE--ECCCcEEEEECCCCeeEEEeccc----
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFC--RTDLKFCSC--SDDTTVKVWDFARCQEERSLTGH---- 269 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~s--pd~~~Las~--s~Dg~V~iwdl~~~~~~~~l~~~---- 269 (715)
.++++++.||.|.-+|.++++.+..+.... ..+....-. ..+..++.+ +.||.|..+|.+++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 578889999999999999998888775541 122211100 112234433 68999999999887555443311
Q ss_pred CCceEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC-------ceEEEEEc-----CCCCEEEE
Q 005096 270 GWDVKS---VDW-----HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-------MVLCVKWN-----QNGNWVLT 329 (715)
Q Consensus 270 ~~~I~s---i~~-----spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~-------~I~sl~~s-----pdg~~Las 329 (715)
...+.. ..+ ..++..+++++.++.+...|+++|+.+.++..... ...|.... ..+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 001 01356788999999999999999999998863321 11122211 12456777
Q ss_pred EECCCeEEEEECCCCe
Q 005096 330 ASKDQIIKLYDIRAMK 345 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~ 345 (715)
+..+..|.+.+ ++++
T Consensus 171 g~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA 185 (339)
T ss_dssp EEEEEECEECC-TTSC
T ss_pred ecceEEEEEEC-CCCC
Confidence 77777777776 4453
No 342
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.18 E-value=0.01 Score=60.91 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=116.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|..|+..... .+.-. ||+|+.|-......+-.-......|..|+...+ ..++. . ||.|..|-.+....+..-.
T Consensus 25 ~i~~ia~G~~h--~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE--EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe--EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 35555554332 22224 888999965432211111112335666666533 23333 4 8999999755432111111
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.....|..|+...+ +.+..+ ||.|+.|-.+....+-.-......|..|+...+. .++ -. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCC
Confidence 12346777766543 444445 9999999875432222112233457777765332 222 33 799999976542222
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
..-......|..|+...+. .++. .||.|+.|-......+-.-......|..|+.. ....++-. ||.|+.|-.+
T Consensus 173 g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G---~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASG---EWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEC---SSCEEEEE-TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcC---CCEEEEEE-CCEEEEecCC
Confidence 1111123457777665332 2333 59999999765432221111123457777764 33333334 9999999765
Q ss_pred CC
Q 005096 386 HE 387 (715)
Q Consensus 386 ~~ 387 (715)
..
T Consensus 246 ~~ 247 (282)
T 3qhy_B 246 RT 247 (282)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 343
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.17 E-value=0.036 Score=59.35 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=97.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEeccC----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------
Q 005096 279 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--------- 345 (715)
Q Consensus 279 spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--------- 345 (715)
..++..|+++- ++.||.-++.....-+.++.. -..|..+..+++|++||..+ +..|.|..+-.+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 33455555543 477888887754444444422 23688899999999999886 5688888886321
Q ss_pred ---EEEEeec------CCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCceEEEe---------eccCCCEEEEE
Q 005096 346 ---ELESFRG------HRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQVEIH---------NVHDNTVWDLA 405 (715)
Q Consensus 346 ---~~~~~~~------h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~ 405 (715)
..+.+.. ....|..+.|+|.+ +..|++-..|+.|++||+......-..+ ......|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 1223332 24679999999964 4589999999999999997632211111 11225789999
Q ss_pred EcCCCCEEEEEE--CCCeEEEE
Q 005096 406 WHPIGYLLCSGS--NDHTTKFW 425 (715)
Q Consensus 406 ~spdg~~L~sgs--~Dg~I~iW 425 (715)
|..++-.|+..+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999987777766 77887654
No 344
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=97.12 E-value=0.22 Score=51.62 Aligned_cols=187 Identities=8% Similarity=0.074 Sum_probs=113.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCce-------EEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---C----
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNF-------EMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---N---- 218 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~-------~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~---~---- 218 (715)
++..++++.+.+|.|+--.+.+.+. ...+. ...+.+..+......+.++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4566789999999999886554322 11111 1234455555555566777778888877765431 1
Q ss_pred --ce---eeeecCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCCC
Q 005096 219 --NV---KANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 219 --~~---~~~~~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg~ 283 (715)
.. ...+ ...+.|.++.... ++.+|+..+.+|.++...+... .....+.. .+.+..+....++.
T Consensus 86 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 10 0111 1234565554443 4678999999999999987432 22223333 45566655555566
Q ss_pred EEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 284 LLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.|+..+.+|.+..+++.. |.....+. ....|.++....++..|++.+..|.++..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788888999998887643 11222233 244566666555667788899999999988753
No 345
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=97.11 E-value=0.2 Score=51.88 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=132.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcee--------eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE----
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMNNVK--------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---- 263 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~~~~--------~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~---- 263 (715)
++..++++.+.+|.|+-..+...... .......+.+..+..+.....++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45677888999999998765432111 111123456667777777788889999999887776321110
Q ss_pred --------EEecccCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCCC
Q 005096 264 --------RSLTGHGWDVKSVDWHP---TKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGN 325 (715)
Q Consensus 264 --------~~l~~~~~~I~si~~sp---dg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg~ 325 (715)
..+. ....|.++.... ++.+|+..+.+|.++...+.. |.....+.. .+.+..+....+..
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 1122 223454443332 456788889999999987742 222333443 45566666655566
Q ss_pred EEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC------ce
Q 005096 326 WVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------PQ 390 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~------~~ 390 (715)
.|+..+.+|.+..++... |.....+.. ...|.++.... ++..|++.+.+|.++..++..-. .=
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 788899999999888743 222233332 44566665554 45678888999999988874311 11
Q ss_pred EEEee---ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 391 VEIHN---VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 391 ~~~~~---~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..... .....+.++....+...|...+..|.+.-...+
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 11111 122344443333344556666667765545543
No 346
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=97.10 E-value=0.18 Score=52.53 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=130.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-------EEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe---CCCC------
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNF-------EMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMN------ 218 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~-------~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd---~~~~------ 218 (715)
...+++.+.+|.|+--.+.+.+. ...+. .....+..+........|+.-+..|.++... +...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34678888889888765332111 11111 1234455555555556666666677766554 3221
Q ss_pred ceeeee-c-CCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCCe-------eEEEecccCCceEEEEEcCCCCEEE
Q 005096 219 NVKANK-S-AHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARCQ-------EERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 219 ~~~~~~-~-~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~~-------~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
..+..+ . ...+.|..+.... ++.++++++.+|.|+...+.+.. ....+.. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 111111 1 1345566655444 47899999999999999875422 2223333 34555555555566788
Q ss_pred EEeCCCcEEEEECC--C----Cc-----eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------EEE
Q 005096 287 SGGKDSLVKLWDAK--S----GR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELE 348 (715)
Q Consensus 287 sgs~Dg~I~iwDl~--s----~~-----~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-------~~~ 348 (715)
..+.+|.+..+... . ++ ....+. ....|.++....++.+|++.+..|.++.-.+.... -+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88889998888766 2 11 112232 34557776666667789999999999988764322 122
Q ss_pred --EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 349 --SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 349 --~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.+......+..+.... ++..|+..+.+|.+..++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 2222234455555444 45566667778888777664
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.09 E-value=0.12 Score=57.14 Aligned_cols=225 Identities=10% Similarity=0.139 Sum_probs=133.6
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEecc-------------------------CCCEE--EEEEc---CCCCEEEEEe-CC
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQAH-------------------------DHAIR--SMVWS---HNDNWMVSGD-DG 207 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~h-------------------------~~~V~--~l~~s---pdg~~L~tgs-~d 207 (715)
+.+|+..|.|+|+-+-+.+.++.+... .+... .+.+. .||+||++-+ .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 567888899999998888887775321 11112 23332 2578888776 45
Q ss_pred CcEEEEeCCCCceeeeecC-CCCCeEEEEEe--cCCCEEEEEEC-------CCcEE---------E---EECCCCeeEEE
Q 005096 208 GAIKYWQNNMNNVKANKSA-HKESVRDLSFC--RTDLKFCSCSD-------DTTVK---------V---WDFARCQEERS 265 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~-h~~~I~~l~~s--pd~~~Las~s~-------Dg~V~---------i---wdl~~~~~~~~ 265 (715)
..|...+++..++...+.. ....+.+++|- ++..++++++. ||... + .|.++.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 7788889888876655543 45577888886 57788887765 33211 1 12222222111
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCC---------------cEEEEECC-------CCc-------eeEEecc------
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDS---------------LVKLWDAK-------SGR-------ELCSFHG------ 310 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg---------------~I~iwDl~-------s~~-------~~~~~~~------ 310 (715)
+. -.+....+..++++++.++.+.+. .|.++|++ .|+ -+..+.+
T Consensus 233 v~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 11 112233445566777777766532 24555431 010 1112211
Q ss_pred ---------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE-------------EEEeecCCCCeEEEEEccCCC
Q 005096 311 ---------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE-------------LESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 311 ---------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~-------------~~~~~~h~~~V~~l~~sp~~~ 367 (715)
-......+.++|||+++++++ .+.+|.|+|+++... +.... -.......+|.. ++
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G 389 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RG 389 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CC
Confidence 122345688999999998876 567999999875221 11222 344567889988 56
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 005096 368 EYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~ 386 (715)
+...+.-.|..|..|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 6666777899999999864
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.96 E-value=0.35 Score=53.01 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=121.3
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc---eeeeec---------CCCCCeEEEEEecC---CCEEEEE-EC-
Q 005096 187 HAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNN---VKANKS---------AHKESVRDLSFCRT---DLKFCSC-SD- 248 (715)
Q Consensus 187 ~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~---~~~~~~---------~h~~~I~~l~~spd---~~~Las~-s~- 248 (715)
..-..|+|.+|++ .|+++...|.|++++.+... .+..+. ........|+|+++ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4557899999986 55566788999999754321 111111 11356788999986 3333332 21
Q ss_pred -C----------CcEEEEECCC----------CeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCC-------------
Q 005096 249 -D----------TTVKVWDFAR----------CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS------------- 292 (715)
Q Consensus 249 -D----------g~V~iwdl~~----------~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg------------- 292 (715)
+ ..|.-|.+.. .+.+..+. ........|+|.+||.++++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1454566532 12222222 1223467899999998777766533
Q ss_pred ----cEEEEECCCC---------------------ceeEEeccCCCceEEEEEcCC-----CC-EEEEEECCC----eEE
Q 005096 293 ----LVKLWDAKSG---------------------RELCSFHGHKNMVLCVKWNQN-----GN-WVLTASKDQ----IIK 337 (715)
Q Consensus 293 ----~I~iwDl~s~---------------------~~~~~~~~~~~~I~sl~~spd-----g~-~Lasgs~dg----~I~ 337 (715)
.|.-.|.+.. ..+.. .++. ....++|++. |+ +++.+...| .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333333321 01111 1222 2456889886 34 444433212 123
Q ss_pred EEECCCCe------EEEEeecCC-CCeEEEEEccC------CCCEEEEEeCCCcEEEEEcCCCCc--eEEEe-ec-----
Q 005096 338 LYDIRAMK------ELESFRGHR-KDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETP--QVEIH-NV----- 396 (715)
Q Consensus 338 iwDl~t~~------~~~~~~~h~-~~V~~l~~sp~------~~~~l~sgs~DG~I~iwd~~~~~~--~~~~~-~~----- 396 (715)
|..+..+. .+..+..+. ..++.+.|-.. .+. ++++...+.|....++.... ....+ ..
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 33333222 233333221 46778877541 122 44455557776666544321 11122 11
Q ss_pred ---cCCCEEEEEEcCCCCEEEEEECC-----CeEEEEecCCC
Q 005096 397 ---HDNTVWDLAWHPIGYLLCSGSND-----HTTKFWCRNRP 430 (715)
Q Consensus 397 ---h~~~V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~~ 430 (715)
....+.++.+.+||.++++.... ..=+||++...
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p 372 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDP 372 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECT
T ss_pred cccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCc
Confidence 13578999999999888877521 23456777543
No 349
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.96 E-value=0.051 Score=58.25 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=94.8
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------- 303 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~------- 303 (715)
..+.++..|+++- ++.||.-++.....-+.+... -..|..+..+++|++|+..+. ..|.|..+-.+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3445666666554 367887787644333344332 236888999999999998865 578888876321
Q ss_pred -----eeEEecc------CCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCe--EE--------EEeecCCCCeEE
Q 005096 304 -----ELCSFHG------HKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMK--EL--------ESFRGHRKDVTA 359 (715)
Q Consensus 304 -----~~~~~~~------~~~~I~sl~~sp---dg~~Lasgs~dg~I~iwDl~t~~--~~--------~~~~~h~~~V~~ 359 (715)
..+.+.- ....|..+.|+| ++..|++-..|+.|++||+.... .. ..+......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1122321 246799999999 45789999999999999998521 11 111223367899
Q ss_pred EEEccCCCCEEEEEe--CCCcEEE
Q 005096 360 LAWHPFHEEYFVSGS--LDGSIFH 381 (715)
Q Consensus 360 l~~sp~~~~~l~sgs--~DG~I~i 381 (715)
++|.. ++-.|...+ .+|.|+-
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEE
Confidence 99998 565555544 7787764
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.96 E-value=0.18 Score=53.69 Aligned_cols=257 Identities=10% Similarity=0.028 Sum_probs=121.2
Q ss_pred CccEEEEEEcC-CCCEEEEEeCCC----eEEEEeCCCCceEEEEec--------------cCCCEEEEEEcCC--CCEEE
Q 005096 144 RCSINRVLWTP-TGRRLITGSQSG----EFTLWNGQSFNFEMILQA--------------HDHAIRSMVWSHN--DNWMV 202 (715)
Q Consensus 144 ~~~I~~l~~sp-dg~~Latgs~dg----~I~Iwd~~~~~~~~~l~~--------------h~~~V~~l~~spd--g~~L~ 202 (715)
...|.+|++.+ +...|.+++..| .|...+ +.++.-..+.. ....|.+|++.+. .+.|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35689999998 333455555444 454443 22221111110 1125778888862 45565
Q ss_pred EEeCCCcEEEEeCCCCceeeeec-------------------CCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCee
Q 005096 203 SGDDGGAIKYWQNNMNNVKANKS-------------------AHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~~~~~~-------------------~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
++...+.|...+-. ++....+. .....|.+|.+.+. ...|+++..++.|...+- .++.
T Consensus 133 ~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 55555555444322 22111111 11235788888873 345555554444444321 2222
Q ss_pred EEEecc-------------cCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEecc--CC---CceEEEEEcC-
Q 005096 263 ERSLTG-------------HGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQ- 322 (715)
Q Consensus 263 ~~~l~~-------------~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~--~~---~~I~sl~~sp- 322 (715)
-..+.. ....+.+|+++++ ...|+++...+ |...+- .++.-..+.. .. ..+.+|++++
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 222211 0134889999986 35677676544 544442 2333322221 11 3456788876
Q ss_pred CCCEEEEEEC-----------CCeEEEEECCC-CeEEEEee-cCCC-------CeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 323 NGNWVLTASK-----------DQIIKLYDIRA-MKELESFR-GHRK-------DVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 323 dg~~Lasgs~-----------dg~I~iwDl~t-~~~~~~~~-~h~~-------~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
+...|+++.. ++...||...+ ++.-..+. +... ....+++++.+...|+.++.++.|.+-
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3344555432 23345555443 22222221 1110 124578887555556666666665433
Q ss_pred EcCCCCceEEEeeccCCCEEEEEEc
Q 005096 383 LVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
............+--.|.++.|.
T Consensus 369 --~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 369 --ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp --SSTTSBCEEEECSCSCEEEEEEE
T ss_pred --CCCCCCceEcccCCCCeeEEEEe
Confidence 22222233333334457777664
No 351
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=96.96 E-value=0.4 Score=49.50 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=126.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEE---------EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---CC-----
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMI---------LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN---NM----- 217 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~---------l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~---~~----- 217 (715)
+..++++.+.+|.|+--.+.+.+..+. ++. ++.+..+......+.|+..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 455788999999998877665432211 222 234444444445566766777787666543 22
Q ss_pred -Cceee-ee-cCCCCCeEEEEEe---cCCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCCCE
Q 005096 218 -NNVKA-NK-SAHKESVRDLSFC---RTDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 218 -~~~~~-~~-~~h~~~I~~l~~s---pd~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
+..+. .+ -...+.|.++... .++.+|+.++.+|.++...+.+. .....+... +.+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 11111 11 1234456665443 35668999999999999987422 122223333 45555555445567
Q ss_pred EEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---------eE
Q 005096 285 LVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM---------KE 346 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~---------~~ 346 (715)
|+..+.+|.+..++... |.....+. ....|.++....++..|++.+..|.++..++... ..
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 77888889888887532 11112232 3445666665555677888999999998877322 11
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...+....+.+..+.... ++..|+..+.+|.+..+++.
T Consensus 239 ~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGG
T ss_pred eeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEecc
Confidence 222332334454444433 34445566667776666653
No 352
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.91 E-value=0.054 Score=66.14 Aligned_cols=256 Identities=10% Similarity=0.092 Sum_probs=149.6
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEE
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~La 244 (715)
+..|.|.|+.+...+.+.. -...+...+|..+.|+.-. ..++.|+|+++...+....- ...|.-=.|..+ +.|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeE
Confidence 3478899988765442211 1112344567777776554 68999999998876665543 345655566544 3444
Q ss_pred EEECCCcEEEEECCC-CeeEEEeccc----CCceEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCceeEEeccCC
Q 005096 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGG-------KDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I~si~~spdg~~L~sgs-------~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
..+ +..|+.|++.. ...++.+..| ...|..-..+++.++++..+ -.|.+.+|..+.+ .-..+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 444 44799999964 2333444433 45677888888888776544 3477889987743 334455565
Q ss_pred CceEEEEEcC---CCCEEEEEEC---CCeEEEEECCCC---eE------EEEee---cCCCCeEEEEEccCCCCEEEEEe
Q 005096 313 NMVLCVKWNQ---NGNWVLTASK---DQIIKLYDIRAM---KE------LESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 313 ~~I~sl~~sp---dg~~Lasgs~---dg~I~iwDl~t~---~~------~~~~~---~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.....+.+.- ...+++.+.. .++++|.++... .. +..+- ....--.++..++ ...++...+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEe
Confidence 5444444321 1123332222 368888888542 11 11111 1122345566666 566777888
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.-|.|.+||+.++..+..-.. ....|...+.+....-++.....|.|.--.+++.
T Consensus 278 k~G~~~~~d~~t~~~i~~~ri-s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cCceEEEEecccchhhhhccc-cCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 999999999999876654332 3445554444444333555556777666666543
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=96.90 E-value=0.14 Score=53.44 Aligned_cols=199 Identities=8% Similarity=0.030 Sum_probs=119.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCC------ceEEE-Ee-ccCCCEEEEEEcC---CCCEEEEEeCCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSF------NFEMI-LQ-AHDHAIRSMVWSH---NDNWMVSGDDGG 208 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd---~~~~------~~~~~-l~-~h~~~V~~l~~sp---dg~~L~tgs~dg 208 (715)
..+.+..+........|+.-+..|.++... +... ..+.. +. .....|.++.... ++.++++.+.+|
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 344566666666666788788888766554 3322 11111 11 1234555554433 478999999999
Q ss_pred cEEEEeCCCCc-------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC--CCee---------EEEecccC
Q 005096 209 AIKYWQNNMNN-------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQE---------ERSLTGHG 270 (715)
Q Consensus 209 ~I~iwd~~~~~-------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~--~~~~---------~~~l~~~~ 270 (715)
.|+...+.... ....+. ..+.+..+........|+..+.+|.+..+... .-.. ...+. ..
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-ID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TT
T ss_pred EEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CC
Confidence 99998765421 111222 24566666666677789999999999888876 3211 11222 34
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-------RELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-------~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
..|.++....++..|++.+..|.++.-.+..- +-+.. +......+..+....+...|+..+.+|.+..++.
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 55777766666778999999999998875421 22222 2222344555544445556777777888777776
Q ss_pred CC
Q 005096 342 RA 343 (715)
Q Consensus 342 ~t 343 (715)
..
T Consensus 278 ~~ 279 (327)
T 3uc1_A 278 RQ 279 (327)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.73 E-value=0.048 Score=63.27 Aligned_cols=194 Identities=8% Similarity=0.031 Sum_probs=105.6
Q ss_pred CCCCEEEEEeCC----CeEEEEeCCCCceEEEE-e------cc-CCCEEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 005096 154 PTGRRLITGSQS----GEFTLWNGQSFNFEMIL-Q------AH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (715)
Q Consensus 154 pdg~~Latgs~d----g~I~Iwd~~~~~~~~~l-~------~h-~~~V~~l~~spdg~~L~tgs~d------g~I~iwd~ 215 (715)
-++.+++.|+.+ ..+.+||..+.+....- . .. .....++.+..++++++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889998876655443 1 11 1122233332266777777654 35788888
Q ss_pred CCCceeeeecCCCCCe-EEEEEecCCCEEEEEECCC--cEEEEECCCCeeEEEec-----ccCCceEEEEEcCC-CCEEE
Q 005096 216 NMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEERSLT-----GHGWDVKSVDWHPT-KSLLV 286 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~Dg--~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spd-g~~L~ 286 (715)
.+..-...-....... .+++...+++.++.|+.++ .+.+||+.+.+-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8764333211111111 1222323778888877654 79999997765332211 11222334555555 66777
Q ss_pred EEeC--C-----CcEEEEECCCCce-----eEEecc---CCCceEEEEEcCCCCEEEEEEC--------CCeEEEEECCC
Q 005096 287 SGGK--D-----SLVKLWDAKSGRE-----LCSFHG---HKNMVLCVKWNQNGNWVLTASK--------DQIIKLYDIRA 343 (715)
Q Consensus 287 sgs~--D-----g~I~iwDl~s~~~-----~~~~~~---~~~~I~sl~~spdg~~Lasgs~--------dg~I~iwDl~t 343 (715)
.|+. + +.+.+||+.+.+. ...+.. ....-.+++...++++++.|+. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 4588999987761 112211 1111122233333677777764 34689999987
Q ss_pred CeEE
Q 005096 344 MKEL 347 (715)
Q Consensus 344 ~~~~ 347 (715)
.+-.
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 6544
No 355
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=96.73 E-value=0.44 Score=49.54 Aligned_cols=230 Identities=7% Similarity=-0.004 Sum_probs=132.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC----ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------Cee
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQE 262 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---------~~~ 262 (715)
++..++++.+.+|.|+--.+... .....+ ...+.+..+..+.....|+..+..|.++-+...+ +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l-ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM-KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC-CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcccccc-CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 45677888999999987754321 111112 2345666677777778888889999877776521 221
Q ss_pred EE---EecccCCceEEE-EEcC--CCCEEEEEeCCCcEEEEECCC--------CceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 263 ER---SLTGHGWDVKSV-DWHP--TKSLLVSGGKDSLVKLWDAKS--------GRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 263 ~~---~l~~~~~~I~si-~~sp--dg~~L~sgs~Dg~I~iwDl~s--------~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
+. .+. ....|.++ .+.. ++.+|+.++.+|.++...+.. +.....+... +.+..+....+...|+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 11 122 23345544 4432 256889999999999987642 2222233323 5555555555566788
Q ss_pred EEECCCeEEEEECCCC---------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------CceEE
Q 005096 329 TASKDQIIKLYDIRAM---------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------TPQVE 392 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~---------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~~~~~ 392 (715)
..+.+|.+..++...- .....+. ....|.++.....+...|++.+..|..+..++..- .-...
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 8889999888876432 1222222 23456666554423327888888998888776431 11111
Q ss_pred E--eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 393 I--HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 393 ~--~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+ .......+..+....++..|+..+.+|.+...+++.
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1 111122455443333445677777888877777754
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=96.69 E-value=0.84 Score=48.32 Aligned_cols=228 Identities=10% Similarity=0.016 Sum_probs=128.7
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC---------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---C---
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQS---------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M--- 217 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---~--- 217 (715)
-++..++++.+.+|.|+--.+.+ +.....++ ....+..+........|+..+..|.++-+... .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999999865322 12222333 34556666666566777777778887665432 1
Q ss_pred ---Cceeeee--cCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCC
Q 005096 218 ---NNVKANK--SAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 218 ---~~~~~~~--~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg 282 (715)
+..+..+ -...+.|.++.... ++.+|+.++.+|.++...+... .....+.. .+.+..+....+.
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 1111111 12345566655432 4568999999999999987432 22223332 3445555554455
Q ss_pred CEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcC-------------------------------
Q 005096 283 SLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQ------------------------------- 322 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~sp------------------------------- 322 (715)
..|+..+.+|.+..|+... |.....+. ....|.++....
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6777888889888886532 11111222 233455444433
Q ss_pred ----CCCEEEEEECCCeEEEEECCCCeE-------EE--EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 323 ----NGNWVLTASKDQIIKLYDIRAMKE-------LE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 323 ----dg~~Lasgs~dg~I~iwDl~t~~~-------~~--~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
++.+|++.+..|..+...+..... +. .+....+.+..+.+.. ++..|+..+..|.+.-..+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~-~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG-STDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEETTCCEEEEEG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeC-CCceEEEEcCCCeEEEeeH
Confidence 446889999999998887743221 22 2222334455544443 4445555566676655554
No 357
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.68 E-value=0.065 Score=52.27 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee------EEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL------CSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~------~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+++++|+|++.+.++ .+|.|+-.+..+.... ..+ ...-....++.|.++|.+.++ .||.|+-++--+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 46789999999886666 6787777776542221 111 001111478999999987777 569988777533
Q ss_pred CeE-------EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC------ceEEEeeccCCCEEEEEEcCCC
Q 005096 344 MKE-------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------PQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 344 ~~~-------~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg 410 (715)
... ...-...-..+..|.+.| ++.+.++. |+.++-+.--... ....+....-.....+.|.+++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 111 111111224678999999 77777666 7775433222111 0111111222344557789888
Q ss_pred CEEEEEECCCeEEEEecCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.+.++. +| +||....+
T Consensus 194 ~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CEEEEE--TT--EEEEESCC
T ss_pred cEEEEe--CC--eEEecCCc
Confidence 777666 66 55665443
No 358
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.66 E-value=0.049 Score=66.47 Aligned_cols=204 Identities=9% Similarity=0.100 Sum_probs=124.5
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCC---
Q 005096 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH--- 227 (715)
Q Consensus 152 ~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h--- 227 (715)
.+|..+.||.-. ..++.|+|+++...++.+...+ .|.-=.|..+. .|+..+ +..|.-|+++.. ..+..+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 455555555443 6789999999988888777644 45555676444 443333 457999999653 222223222
Q ss_pred -CCCeEEEEEecCCCEEEEEE-------CCCcEEEEECCCCeeEEEecccCCceEEEEEcCC---CCEEEEEeC---CCc
Q 005096 228 -KESVRDLSFCRTDLKFCSCS-------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT---KSLLVSGGK---DSL 293 (715)
Q Consensus 228 -~~~I~~l~~spd~~~Las~s-------~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd---g~~L~sgs~---Dg~ 293 (715)
...|.....+++.++++..+ -.|.+.+|.++.. ....+.+|......+.+..+ ..+++.+.. .+.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 45677777788888876543 2478888887653 44556666655544444311 223333322 268
Q ss_pred EEEEECCCC---cee------EEec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 294 VKLWDAKSG---REL------CSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 294 I~iwDl~s~---~~~------~~~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+.|.++... ... ..+. ...+--.++..++.-..++..+.-|.|.+||+.|+.++..-+.....|...
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (1630)
T ss_pred EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence 888888542 111 1111 112334567778877888899999999999999999887666444444333
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=96.61 E-value=0.24 Score=50.31 Aligned_cols=196 Identities=9% Similarity=0.014 Sum_probs=118.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCCceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd---~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
.+.|.++.......+|+.-+.+|.++--. +...+....+ ..+..|..+.... ++.++++.+.+|.|+...+..-.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34566665555666788888888776543 2222111112 2355666664422 56789999999999998765431
Q ss_pred -----e-eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeeEEEecccCCceEEEEEcCCCCE
Q 005096 220 -----V-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 220 -----~-~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---------~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
. ...+. ..+.+..+....+...|+..+.+|.+..++..+ +.....+. ....|.++....++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 1 11122 345676776666777899999999999888632 11222232 2345666555556678
Q ss_pred EEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE--EECCC
Q 005096 285 LVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL--YDIRA 343 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i--wDl~t 343 (715)
|+..+..|.++..++.. ++-+..+. ..+.+..+....+...|+..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 88899999999887642 22233332 3344554444334456677777787777 76543
No 360
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.60 E-value=0.054 Score=52.84 Aligned_cols=141 Identities=8% Similarity=-0.023 Sum_probs=81.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCC--------eEEEEEecCCCEEEEEECCCcEEEEECC
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES--------VRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--------I~~l~~spd~~~Las~s~Dg~V~iwdl~ 258 (715)
..+++++|++++.+.++ .+|.+.-.+..+.....-+. .... ..++.|.+++.+.++ .||.|+-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999987776 66776666654421111111 1122 478899999987777 56888887752
Q ss_pred CCeeE------EEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEE-eccCCCceEEEEEcCCC
Q 005096 259 RCQEE------RSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE------LCS-FHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 259 ~~~~~------~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~------~~~-~~~~~~~I~sl~~spdg 324 (715)
+.... ..+ ...=..+..|.+.|+|.+.++. |+.++-+..-++.. ... ....-...+.+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 21111 111 1112467999999999977766 77754432221110 111 11223345567788888
Q ss_pred CEEEEEECCCeE
Q 005096 325 NWVLTASKDQII 336 (715)
Q Consensus 325 ~~Lasgs~dg~I 336 (715)
.++++. ++.|
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 766665 6644
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=96.57 E-value=0.42 Score=48.48 Aligned_cols=193 Identities=12% Similarity=0.086 Sum_probs=112.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEe---CCCCceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCe
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ 261 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd---~~~~~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~ 261 (715)
+.+..+.-....++|+.-+++|.++... +........+ ...+.|..+.. . ++.+++.++.+|.|+...+.+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3455554444445555566677766443 2222111112 23556666654 4 56789999999999999875532
Q ss_pred ------eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCE
Q 005096 262 ------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 262 ------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
....+. ..+.+..+....+...|+..+.+|.++.++... |.....+.. ...|.++....++.+
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 122233 344566666665666888888999988886532 112222332 345666655556678
Q ss_pred EEEEECCCeEEEEECCCC-------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE--EEcC
Q 005096 327 VLTASKDQIIKLYDIRAM-------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH--WLVG 385 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~-------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i--wd~~ 385 (715)
|++.+..|.++..++... +-+..+ ...+.+..+.... ++..++..+.+|.+.. ++.+
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 999999999998886432 222233 2233444444333 4456666777777777 7653
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.56 E-value=0.5 Score=51.76 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=61.0
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---eEEEEe---------ccCCCEEEEEEcCC---CCEEEEE-eC-
Q 005096 145 CSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN---FEMILQ---------AHDHAIRSMVWSHN---DNWMVSG-DD- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~---~~~~l~---------~h~~~V~~l~~spd---g~~L~tg-s~- 206 (715)
..-..|+|.+||+ +|+++...|.|++++..... .+..+. ........|+|+++ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 57777889999999754321 122221 11456889999986 3344332 21
Q ss_pred -C----------CcEEEEeCCCC----------ceeeeec--CCCCCeEEEEEecCCCEEEEEECC
Q 005096 207 -G----------GAIKYWQNNMN----------NVKANKS--AHKESVRDLSFCRTDLKFCSCSDD 249 (715)
Q Consensus 207 -d----------g~I~iwd~~~~----------~~~~~~~--~h~~~I~~l~~spd~~~Las~s~D 249 (715)
+ ..|.-|.+... +.+..+. ........|+|.+|+.++++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444554321 1222221 222346789999999877766553
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=96.47 E-value=0.35 Score=55.96 Aligned_cols=229 Identities=10% Similarity=0.063 Sum_probs=119.4
Q ss_pred EcCCCCEEEEE-eC----CCcEEEEeCCCCceeee-ec-CCCC------CeEEEEEecCCCEEEEEEC-----------C
Q 005096 194 WSHNDNWMVSG-DD----GGAIKYWQNNMNNVKAN-KS-AHKE------SVRDLSFCRTDLKFCSCSD-----------D 249 (715)
Q Consensus 194 ~spdg~~L~tg-s~----dg~I~iwd~~~~~~~~~-~~-~h~~------~I~~l~~spd~~~Las~s~-----------D 249 (715)
+++++++++.+ +. ...|+++|+++++.+.. +. ..+. ....++|..+ +.++.+.. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCC
Confidence 78888877643 22 24689999999876532 11 0011 1244578744 44444321 2
Q ss_pred CcEEEEECCCCe--eEEEecccCCce-EEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceeEEeccCCCceE
Q 005096 250 TTVKVWDFARCQ--EERSLTGHGWDV-KSVDWHPTKS-----LLVSGGKD---SLVKLWDAKS--GRELCSFHGHKNMVL 316 (715)
Q Consensus 250 g~V~iwdl~~~~--~~~~l~~~~~~I-~si~~spdg~-----~L~sgs~D---g~I~iwDl~s--~~~~~~~~~~~~~I~ 316 (715)
.+|+.|.+.+.. -...+.+....+ .+...+.+++ .+++.+.+ ..+.+.|+.. ++ +..+..... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~-~- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD-A- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT-C-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc-c-
Confidence 468999886542 233344333332 3455566666 24443322 4566667653 32 233322222 1
Q ss_pred EEEEcCCCCEEEEE----------ECCCeEEEEECCCCe-------EEEE-ee-cCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 317 CVKWNQNGNWVLTA----------SKDQIIKLYDIRAMK-------ELES-FR-GHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 317 sl~~spdg~~Lasg----------s~dg~I~iwDl~t~~-------~~~~-~~-~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.+..+.++.+++.. ...+.|.+.|+.+.. .... +. ..+..+..+.|.. +.++++...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~ 370 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK--DRVFLATYDNV 370 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS--SCEEEEEEETT
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC--CEEEEEEEECC
Confidence 12233355444422 246789999987631 2222 22 2344677888874 57888888887
Q ss_pred c--EEEEEcCCCC-ceEE-EeeccCCCEEEEEEcCCC-CEEEEEEC---CCeEEEEecC
Q 005096 378 S--IFHWLVGHET-PQVE-IHNVHDNTVWDLAWHPIG-YLLCSGSN---DHTTKFWCRN 428 (715)
Q Consensus 378 ~--I~iwd~~~~~-~~~~-~~~~h~~~V~~l~~spdg-~~L~sgs~---Dg~I~iWdl~ 428 (715)
. |.++|+.++. .... +.....+.|..+.++.++ .++++.+. -+.+..+|+.
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5 5666654442 1222 221123467666666665 45555443 2456666654
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=96.44 E-value=0.8 Score=48.48 Aligned_cols=231 Identities=10% Similarity=0.011 Sum_probs=134.6
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC---------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC------
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNM---------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------ 259 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~------ 259 (715)
-++..++++.+.+|.|+--.+.. +.....+ ...+.+..+..+.....|+..+..|.++.+....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999998765322 1122222 3456777777777778888888999887776421
Q ss_pred ---CeeEEE---ecccCCceEEEE-Ec--CCCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCC
Q 005096 260 ---CQEERS---LTGHGWDVKSVD-WH--PTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 260 ---~~~~~~---l~~~~~~I~si~-~s--pdg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spd 323 (715)
+..+.. +. ....|.++. +. .++.+|+.++..|.++...+.. +.....++. ...+..+....+
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 222111 22 234455544 33 2456899999999999987642 222223333 344555555555
Q ss_pred CCEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccC-----------------------------
Q 005096 324 GNWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPF----------------------------- 365 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~----------------------------- 365 (715)
...|+..+.+|.+..++... |.....+. ....|.++.....
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 66788888899888887643 21222222 2334544444331
Q ss_pred -----CCCEEEEEeCCCcEEEEEcCCC-------CceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 366 -----HEEYFVSGSLDGSIFHWLVGHE-------TPQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 366 -----~~~~l~sgs~DG~I~iwd~~~~-------~~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++..|++.+..|..+...+..- .-+..+ +....+.+..+.+..+...|+..+..|.+.-..++.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 3457888899999888876321 111111 111234555555545556677777788777766643
No 365
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=96.39 E-value=1.4 Score=47.34 Aligned_cols=234 Identities=11% Similarity=-0.068 Sum_probs=126.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
..|..|+.. +.+.+.-..||.|+.|-.+... ..-........|..|+. ...+.++.+.||.|+.
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~--G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--GDSHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc--CcCeEEEEeCCCeEEE
Confidence 346666553 4566666788999999543211 00011112345655554 4456667788999999
Q ss_pred EEC--CC-Cee---------EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------
Q 005096 255 WDF--AR-CQE---------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------------------- 303 (715)
Q Consensus 255 wdl--~~-~~~---------~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~------------------- 303 (715)
|-. +. ++. ..........|..|+.. ....++...||.|+.|-....-
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 985 22 111 11111233457777765 3455666788999999643210
Q ss_pred ----eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----------CeEEEEeecCCCCeEEEEEccCCCC
Q 005096 304 ----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-----------MKELESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 304 ----~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-----------~~~~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
...........|..|+... ...++.-..|+.|+.|-... .............|..|+. +..
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~---G~~ 304 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG---GQH 304 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE---CSS
T ss_pred cccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc---ccC
Confidence 0111111223455555432 22233335788888886432 1111122222456777765 566
Q ss_pred EEEEEeCCCcEEEEEcCCCC--------c---eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~--------~---~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
..+.-..||.|+.|-.+... . ...........|..|+.. ....++...||.|+.|=.+..+.
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~~Gq 377 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGVNNQ 377 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCTTSC
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCCCCC
Confidence 66777889999999653211 1 111222222367777765 34455558899999998776554
No 366
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.36 E-value=0.00054 Score=75.33 Aligned_cols=6 Identities=17% Similarity=0.949 Sum_probs=3.1
Q ss_pred EEEEEe
Q 005096 93 QIRMWQ 98 (715)
Q Consensus 93 ~irvW~ 98 (715)
+|.+|.
T Consensus 6 tltvw~ 11 (449)
T 3iot_A 6 KLVIWI 11 (449)
T ss_dssp SEEEEC
T ss_pred eEEEEe
Confidence 455553
No 367
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.36 E-value=0.083 Score=61.27 Aligned_cols=191 Identities=9% Similarity=0.056 Sum_probs=102.4
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCceeeee-c------CCCCCeEEEEEec-CCCEEEEEECC------CcEEEEEC
Q 005096 196 HNDNWMVSGDDG----GAIKYWQNNMNNVKANK-S------AHKESVRDLSFCR-TDLKFCSCSDD------TTVKVWDF 257 (715)
Q Consensus 196 pdg~~L~tgs~d----g~I~iwd~~~~~~~~~~-~------~h~~~I~~l~~sp-d~~~Las~s~D------g~V~iwdl 257 (715)
-++.+++.|+.+ ..+.+||..+++..... . .....-.+++... +++.++.|+.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356777777753 46888888776543322 1 1111122333333 66677777643 35889998
Q ss_pred CCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEec-----cCCCceEEEEEcCC-CCEE
Q 005096 258 ARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQN-GNWV 327 (715)
Q Consensus 258 ~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~Dg--~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spd-g~~L 327 (715)
.+.+-... +....... +++...++++++.|+.++ .+.+||+.+.+-...-. .......++.+..+ ++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 77543222 22111222 333323788888887654 68999998764322111 01122233555554 5666
Q ss_pred EEEEC--C-----CeEEEEECCCCe--------EEEEee-cCCCCeEEEEEccCCCCEEEEEeC--------CCcEEEEE
Q 005096 328 LTASK--D-----QIIKLYDIRAMK--------ELESFR-GHRKDVTALAWHPFHEEYFVSGSL--------DGSIFHWL 383 (715)
Q Consensus 328 asgs~--d-----g~I~iwDl~t~~--------~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~--------DG~I~iwd 383 (715)
+.|+. + ..|.+||+.+.+ .+.... ........+.+. ++.+++.|+. ...|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77765 2 468899998765 122211 111122233331 2777777774 34588999
Q ss_pred cCCCCc
Q 005096 384 VGHETP 389 (715)
Q Consensus 384 ~~~~~~ 389 (715)
..+...
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 877643
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=96.28 E-value=0.71 Score=47.96 Aligned_cols=228 Identities=11% Similarity=0.098 Sum_probs=126.3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---C------Cce
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M------NNV 220 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---~------~~~ 220 (715)
++..++++.+.+|.|+--.+.+.+ ....+.. .+.+..+......+.|+..+..|.++-+... . +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678899999999877543211 1111222 3345455555556667777778887665432 1 111
Q ss_pred eee-ec-CCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCC--------eeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 221 KAN-KS-AHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARC--------QEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 221 ~~~-~~-~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~--------~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+.. +. ...+.|.++....+ +.+|+.++.+|.++...+... .....+.. .+.+..+....+...|+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEE
Confidence 111 11 12345665544332 568999999999999987422 22222332 245555555545567888
Q ss_pred EeCCCcEEEEECCC----Cc-----eeEEeccCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC-------eEEEEe
Q 005096 288 GGKDSLVKLWDAKS----GR-----ELCSFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-------KELESF 350 (715)
Q Consensus 288 gs~Dg~I~iwDl~s----~~-----~~~~~~~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~-------~~~~~~ 350 (715)
.+.+|.+..++... ++ ....+. ....|.++....++. .|++.+..|..+..++... +-+..+
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 88899988887642 11 112222 234466665444445 7888889999888877532 112222
Q ss_pred e---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 351 R---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 351 ~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+ .....+..+.... ++..|+..+.+|.+..+.++
T Consensus 240 ~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGG
T ss_pred eecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhh
Confidence 2 2222444333222 34556666777777666654
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=96.23 E-value=1.3 Score=45.47 Aligned_cols=229 Identities=10% Similarity=-0.012 Sum_probs=130.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeee--------ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKAN--------KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--------- 259 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~--------~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~--------- 259 (715)
+..++++.+.+|.|+--.+...+.... .....+.+..+..+.....|+..+..|.++-+...+
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 456788889999998776654221110 012345566666666777888888999877766521
Q ss_pred CeeEE---EecccCCceEEEEE-c--CCCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCCCE
Q 005096 260 CQEER---SLTGHGWDVKSVDW-H--PTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 260 ~~~~~---~l~~~~~~I~si~~-s--pdg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
+..+. .+. ....|.++.. . .++.+|+..+.+|.++...+.. +.....+... +.+..+....+...
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22111 122 3344555543 2 3456888999999999987642 2122223333 55555555555567
Q ss_pred EEEEECCCeEEEEECCCC---------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC---c---eE
Q 005096 327 VLTASKDQIIKLYDIRAM---------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---P---QV 391 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~---------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---~---~~ 391 (715)
|+..+.+|.+..++...- .....+. ....|.++.... ++..|++.+..|.++..++..-. . -.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 888888998888876432 2222232 334566665543 45678888999999888763211 0 01
Q ss_pred EE--eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 392 EI--HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 392 ~~--~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.. +....+.+..+....+...|+..+.+|.+.-++++.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11 111224555554444455667777788877777654
No 370
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.10 E-value=0.78 Score=50.69 Aligned_cols=228 Identities=10% Similarity=0.062 Sum_probs=130.0
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecCC-------------------------CCCe--EEEEEe---cCCCEEEEEEC-C
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKSAH-------------------------KESV--RDLSFC---RTDLKFCSCSD-D 249 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~I--~~l~~s---pd~~~Las~s~-D 249 (715)
|.+|+..|.|+|+-+-+.+++..+-.. .+.. -.+++. -||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 467788888998887777665554110 1111 123332 25677777664 6
Q ss_pred CcEEEEECCCCeeEEEecc-cCCceEEEEEc--CCCCEEEEEeC-------CCcE---------EE---EECCCCceeEE
Q 005096 250 TTVKVWDFARCQEERSLTG-HGWDVKSVDWH--PTKSLLVSGGK-------DSLV---------KL---WDAKSGRELCS 307 (715)
Q Consensus 250 g~V~iwdl~~~~~~~~l~~-~~~~I~si~~s--pdg~~L~sgs~-------Dg~I---------~i---wDl~s~~~~~~ 307 (715)
..|...+++..++...+.. ....+..++|- |+..+++++++ ||.. .+ .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6788889988877665543 34567888886 57778888765 2221 11 12222222222
Q ss_pred eccCCCceEEEEEcCCCCEEEEEECCC---------------eEEEEECCC-------C--e-----EEEEeec------
Q 005096 308 FHGHKNMVLCVKWNQNGNWVLTASKDQ---------------IIKLYDIRA-------M--K-----ELESFRG------ 352 (715)
Q Consensus 308 ~~~~~~~I~sl~~spdg~~Lasgs~dg---------------~I~iwDl~t-------~--~-----~~~~~~~------ 352 (715)
+. -......+....+++|.++.|.+. .|.++|+.. + + -+..+.+
T Consensus 233 v~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 11 012233344566777777765432 455665421 1 0 1112222
Q ss_pred ---------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-----------ceEEEeeccCCCEEEEEEcCCCCE
Q 005096 353 ---------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 353 ---------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-----------~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
.......+.++|++..+++++-.+.+|.++|++.-. ..+.....-.......+|..+|..
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence 123345678899444445555567899999987411 111111112345678999999966
Q ss_pred EEEEECCCeEEEEecCC
Q 005096 413 LCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~ 429 (715)
..|...|..|.-|+++.
T Consensus 392 YTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EeeeeecceEEEEeccH
Confidence 66777899999999964
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=96.07 E-value=1.9 Score=45.78 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=124.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--------c---eEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----
Q 005096 156 GRRLITGSQSGEFTLWNGQSF--------N---FEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---- 219 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~--------~---~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---- 219 (715)
....+.-..||+|+.|-.... + ....+.. ....+..++++......+.-..||.|+.|-.+...
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 345666677888888853221 1 1112221 23346666777666777777889999999543210
Q ss_pred -------eeeeecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----------e-eEEEecc-cCCceEEEEEc
Q 005096 220 -------VKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----------Q-EERSLTG-HGWDVKSVDWH 279 (715)
Q Consensus 220 -------~~~~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~----------~-~~~~l~~-~~~~I~si~~s 279 (715)
....+.. ....|..|+. ...+.++...||.|+.|-.... . ....+.. ....|..|+..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 1111111 1224555554 4556677788999999975321 0 1111111 23457777765
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c----------eeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~-~----------~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--- 344 (715)
......++...|+.|+.|-.... + ....+.. ....|..|+.. ..+.++-..||.|+.|-....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Confidence 43456666778999999964321 1 1111221 12246665543 344555678999999965321
Q ss_pred --------eEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 345 --------~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.....+.. ....|..|+. +....++...||.|+.|-.+..
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTCCEEEEECCTT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECCCCCEEEeeCCCC
Confidence 11112221 2345666665 5566666788999999976543
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=96.01 E-value=0.82 Score=52.88 Aligned_cols=235 Identities=10% Similarity=0.082 Sum_probs=125.5
Q ss_pred cEEEEE-EcCCCCEEEEEeC-C----CeEEEEeCCCCceEEE-Ee-ccCC------CEEEEEEcCCCCEEEEEe------
Q 005096 146 SINRVL-WTPTGRRLITGSQ-S----GEFTLWNGQSFNFEMI-LQ-AHDH------AIRSMVWSHNDNWMVSGD------ 205 (715)
Q Consensus 146 ~I~~l~-~spdg~~Latgs~-d----g~I~Iwd~~~~~~~~~-l~-~h~~------~V~~l~~spdg~~L~tgs------ 205 (715)
....+. +++|+++++.+-+ . .+|+++|+.+++.+.. +. .-+. ....++|. |++.++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCC
Confidence 345555 8899998876532 2 3699999999877631 11 0000 11344887 444444432
Q ss_pred -----CCCcEEEEeCCCC--ceeeeecCCCCCe-EEEEEecCCC-----EEEEEECC---CcEEEEECCC--CeeEEEec
Q 005096 206 -----DGGAIKYWQNNMN--NVKANKSAHKESV-RDLSFCRTDL-----KFCSCSDD---TTVKVWDFAR--CQEERSLT 267 (715)
Q Consensus 206 -----~dg~I~iwd~~~~--~~~~~~~~h~~~I-~~l~~spd~~-----~Las~s~D---g~V~iwdl~~--~~~~~~l~ 267 (715)
....|+.|.+-+. +-...+......+ .....+.++. .+++.+.+ ..+++.|... ++ ...+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEee
Confidence 1246888887654 2223333333332 3344555655 24443322 4566667653 33 22232
Q ss_pred ccCCceEEEEEcCCCCEEEEE----------eCCCcEEEEECCCC-------ceeEE-e-ccCCCceEEEEEcCCCCEEE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSG----------GKDSLVKLWDAKSG-------RELCS-F-HGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sg----------s~Dg~I~iwDl~s~-------~~~~~-~-~~~~~~I~sl~~spdg~~La 328 (715)
.... . .+..+.++.+++.. ...+.|.+.|+.+. +.... + ......+..+.|..+ .+++
T Consensus 288 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSD-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTT-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCc-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 2221 1 12233345544432 23567889998763 22222 3 223456788888865 5666
Q ss_pred EEECCC--eEEEEECCCCe-EEEE-eecC-CCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcC
Q 005096 329 TASKDQ--IIKLYDIRAMK-ELES-FRGH-RKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVG 385 (715)
Q Consensus 329 sgs~dg--~I~iwDl~t~~-~~~~-~~~h-~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~ 385 (715)
+...++ .|.++|+.+++ .+.. +... ...+..+.+.++++.++++.+.. +.+..+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 776676 46777776665 2333 3222 34566666666556677666543 467777775
No 373
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=95.78 E-value=2.6 Score=45.11 Aligned_cols=228 Identities=7% Similarity=0.037 Sum_probs=121.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-------------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.|..|+.. +.+.+.-..||.|+.|-.... .....+. ....|..|+.. ..+.+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEEE
Confidence 36555554 456777788899999953221 0111111 23456666654 345555578899999
Q ss_pred EeC--CC-Cce---------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------------------
Q 005096 213 WQN--NM-NNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------------------- 261 (715)
Q Consensus 213 wd~--~~-~~~---------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~------------------- 261 (715)
|-. +. +.+ ..........|..|+. ...+.++...||.|+.|-.+..-
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 975 22 211 1111122335655554 34566777889999999643211
Q ss_pred ----eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEeccCCCceEEEEEcCCCCE
Q 005096 262 ----EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----------ELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 262 ----~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-----------~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
...........|..|+... ...++....|+.|+.|-..... ...........|..|+.- ..+
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSE
T ss_pred cccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCe
Confidence 1111111223455665542 2233333578899999543211 111111113346666543 345
Q ss_pred EEEEECCCeEEEEECCCC------------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 327 VLTASKDQIIKLYDIRAM------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~------------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.++...||.|+.|-.... .....+......|..|+. +....++...||.|+.|=.+.
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~---G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGC---GEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEE---ETTEEEEEETTSCEEEEECCT
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEc---CCCeEEEEcCCCCEEEECCCC
Confidence 566678899999964321 112223333336777776 345555558899999997654
No 374
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=95.67 E-value=2.8 Score=44.70 Aligned_cols=272 Identities=11% Similarity=0.069 Sum_probs=145.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------ceEEEEec-cCCCEEEEEEcCCCCEEEEEeCC-CcEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF-----------NFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG-GAIKY 212 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-----------~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~d-g~I~i 212 (715)
.|..|+.. ..+.++-..||+|+.|-.... .....+.. ....|..|+.. ..+.+.-..| +.|+.
T Consensus 17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEE
T ss_pred ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEE
Confidence 45555554 345566677888888853221 11122221 23457777654 2333333344 58999
Q ss_pred EeCCCC---------cee--eeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-----------eEEEecc-
Q 005096 213 WQNNMN---------NVK--ANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------EERSLTG- 268 (715)
Q Consensus 213 wd~~~~---------~~~--~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-----------~~~~l~~- 268 (715)
|-.+.. ... ..+. .....|..|+. ...+.++.+.||.|+.|-.+..- ....+..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 953321 000 1111 12235666655 45566777889999999754311 1111221
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eEEecc-CCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-----------LCSFHG-HKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~-----------~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
....|..|+.. ....++...||.|+.|-...... ...+.. ....|..|+.. ..+.++.+.||.|
T Consensus 171 ~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v 246 (406)
T 4d9s_A 171 EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGAL 246 (406)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCE
T ss_pred CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCE
Confidence 12356777665 34556667889999996432110 111111 12346555543 3455666788999
Q ss_pred EEEECCCCe-----------EEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-----------eEEE
Q 005096 337 KLYDIRAMK-----------ELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----------QVEI 393 (715)
Q Consensus 337 ~iwDl~t~~-----------~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-----------~~~~ 393 (715)
+.|-....- ....+. .....|..|+. +....++-..||.|+.|-.+.... ...+
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG---GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe---cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 999643211 111222 12334666665 556666678899999996543211 1112
Q ss_pred eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 394 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.......|..++.. ....++...||.|+.|=.+..+.
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~~Gq 360 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGTNGQ 360 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCCCCc
Confidence 21223457666654 44566677899999998766544
No 375
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=94.37 E-value=6.4 Score=41.90 Aligned_cols=233 Identities=10% Similarity=0.101 Sum_probs=124.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-c----------eeeeec-CCCCCeEEEEEecCCCEEEEEECC-CcEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-N----------VKANKS-AHKESVRDLSFCRTDLKFCSCSDD-TTVK 253 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~----------~~~~~~-~h~~~I~~l~~spd~~~Las~s~D-g~V~ 253 (715)
..|..|+.. ..+.+.-..||.|+.|=.+.. . ....+. .....|..|+.. ..+.++...| +.|+
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEE
Confidence 455555543 344455566788888853321 0 111111 122356666553 3444444555 4899
Q ss_pred EEECCCC--------e---eEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eeEEecc
Q 005096 254 VWDFARC--------Q---EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG 310 (715)
Q Consensus 254 iwdl~~~--------~---~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~----------~~~~~~~ 310 (715)
.|-.+.. . ....+.. ....|..|+.. ....++...||.|+.|-.... + ....+..
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 9964321 0 1111111 22357777765 445566678999999965431 1 0111211
Q ss_pred -CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----------eE-EEEee-cCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 311 -HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------KE-LESFR-GHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 311 -~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----------~~-~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
....|..|+.. ..+.++...||.|+.|-.... .. ...+. .....|..|+. +....++.+.||
T Consensus 170 ~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~G 244 (406)
T 4d9s_A 170 FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYSG 244 (406)
T ss_dssp GTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETTC
T ss_pred cCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCCC
Confidence 12246666543 445666678999999964321 11 11111 12245666665 556667778899
Q ss_pred cEEEEEcCCCCce-----------EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 378 SIFHWLVGHETPQ-----------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 378 ~I~iwd~~~~~~~-----------~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.|+.|-.+....+ ..+.......|..|+.. ....+....||.|+.|-.+..+.
T Consensus 245 ~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~Gq 308 (406)
T 4d9s_A 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQ 308 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred CEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCC
Confidence 9999975432211 11111122346666654 44566667899999998776554
No 376
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=94.36 E-value=6.4 Score=46.01 Aligned_cols=145 Identities=11% Similarity=0.144 Sum_probs=74.3
Q ss_pred CccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCCC-CEEEEEeCCCc----E
Q 005096 144 RCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHND-NWMVSGDDGGA----I 210 (715)
Q Consensus 144 ~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spdg-~~L~tgs~dg~----I 210 (715)
...|.+|+++|+ ...+++++..+.|...+-. ++.-..+..+ ...|.+|++.+.. +.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999986 3567777777777666522 2222222221 2469999998743 44544432211 3
Q ss_pred EEEe-CCCCceeeeecC---------CCCCeEEEEEecCC-CEEEEEECCCcEEEEEC-CCCeeEEEecc------cCCc
Q 005096 211 KYWQ-NNMNNVKANKSA---------HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDF-ARCQEERSLTG------HGWD 272 (715)
Q Consensus 211 ~iwd-~~~~~~~~~~~~---------h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl-~~~~~~~~l~~------~~~~ 272 (715)
.||. .+.++.-..+.. ....+..|++++.+ +.++.+...+.| |.. +.++.-..+.. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 3443 333332222211 01135567887643 455555534433 322 22222222221 1245
Q ss_pred eEEEEEcCC-CCEEEEEeCC
Q 005096 273 VKSVDWHPT-KSLLVSGGKD 291 (715)
Q Consensus 273 I~si~~spd-g~~L~sgs~D 291 (715)
+..|.+++. .+.|+++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999874 4456666554
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.13 E-value=6.9 Score=41.36 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=95.7
Q ss_pred cEEEEECCCC--eeEEEecc------cCCceEEEEEc---CC----CCEEEEEe-CCCcEEEEECCCCceeEEecc----
Q 005096 251 TVKVWDFARC--QEERSLTG------HGWDVKSVDWH---PT----KSLLVSGG-KDSLVKLWDAKSGRELCSFHG---- 310 (715)
Q Consensus 251 ~V~iwdl~~~--~~~~~l~~------~~~~I~si~~s---pd----g~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~---- 310 (715)
+|.+||+.+. +.++.+.- ....+..|.++ ++ +.+++.+. .+.-|.+||+++++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677788777 66666542 23457778877 22 23444443 456799999998876555420
Q ss_pred C--------------CCceEEEEEcCC----CCEEEEEECCC-eEEEEE---CCCC---eEEEEeecC--CCCeEEEEEc
Q 005096 311 H--------------KNMVLCVKWNQN----GNWVLTASKDQ-IIKLYD---IRAM---KELESFRGH--RKDVTALAWH 363 (715)
Q Consensus 311 ~--------------~~~I~sl~~spd----g~~Lasgs~dg-~I~iwD---l~t~---~~~~~~~~h--~~~V~~l~~s 363 (715)
. ...|..|+++++ +++|+.....+ .+.-.. +++. ..+..+-.. ......+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 235788999997 78888777555 233222 1221 112222111 1334455665
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC-CC--ceEEEe-ec-cCCCEEEEEEcCCCCEEEEEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGH-ET--PQVEIH-NV-HDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~-~~--~~~~~~-~~-h~~~V~~l~~spdg~~L~sgs 417 (715)
+.++.++++--....|..|+..+ .. ....++ .. .-..+..+.+..++.+.++.+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 33677788878888999999876 22 122222 11 122467777766665555443
No 378
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=94.01 E-value=11 Score=43.45 Aligned_cols=229 Identities=11% Similarity=0.057 Sum_probs=107.8
Q ss_pred ccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCC-CCEEEEEeCC-------C
Q 005096 145 CSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHN-DNWMVSGDDG-------G 208 (715)
Q Consensus 145 ~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spd-g~~L~tgs~d-------g 208 (715)
+.|.+|+++++. ..|+++...+.|+.++-....-.. +..+ ...|.+|++++. .+.|+++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~-i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIP-LLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEE-CCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEE-CcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 489999999864 456667766767666533222222 2221 246999999983 3444443321 1
Q ss_pred cEEEEeCCC-Cceeeeec-CC--------CCCeEEEEEecCC-CEEEEEECCCcEEEEECC-C---CeeEEEecc-----
Q 005096 209 AIKYWQNNM-NNVKANKS-AH--------KESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA-R---CQEERSLTG----- 268 (715)
Q Consensus 209 ~I~iwd~~~-~~~~~~~~-~h--------~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~-~---~~~~~~l~~----- 268 (715)
...||.... ++.-..+. .. ...+..|++++.+ +.|+++...+ ..||... . .+.+..+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g-~gl~~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCG-NGLWRSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTT-CCEEEESSTTSSCEECTTCCCCCCCB
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccC-CcEEEeCCCCcceecccCCCCCcccc
Confidence 245555333 32211111 11 1124678888754 5566665331 1233222 2 222211111
Q ss_pred ---------cCCceEEEEEcCCC-------CEEEEEeCCCcEEEEE-CCCCceeEEeccCC-C-ceEEEEEcCCCCEEEE
Q 005096 269 ---------HGWDVKSVDWHPTK-------SLLVSGGKDSLVKLWD-AKSGRELCSFHGHK-N-MVLCVKWNQNGNWVLT 329 (715)
Q Consensus 269 ---------~~~~I~si~~spdg-------~~L~sgs~Dg~I~iwD-l~s~~~~~~~~~~~-~-~I~sl~~spdg~~Las 329 (715)
....+..+.+++.. ..|+++..++...||- .+.++.-..+.... . ....+.+++++.++++
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~ 260 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYIT 260 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEE
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEE
Confidence 11246778887643 2555565554322343 33343333332211 1 2245667776655554
Q ss_pred EE---------CCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEccCCCCEEEEEeCC
Q 005096 330 AS---------KDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 330 gs---------~dg~I~iwDl~t~~~~~~~~~h~-------~~V~~l~~sp~~~~~l~sgs~D 376 (715)
.. ..+.|...+-. ++.-..+.... -....|++++.+.+.|++++.+
T Consensus 261 ~~d~~g~y~~~~~g~v~~s~d~-G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 261 YGDTCGPYDGNGKGQVWKFNTR-TGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp EESSCCSSCCSCCEEEEEEETT-TCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred ecCCCCccccccCceEEEEeCC-CCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEecc
Confidence 43 22344444432 22222222111 1134688888776666666543
No 379
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=93.77 E-value=9.2 Score=41.58 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=104.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECC---CCee------------EEEecc-cCCceEEEEEcCCCCEEEEEeCCC
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQE------------ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~------------~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
..|..|+. .....++.+.||.|+.|-.. .+.. ...+.. ....|..|+.. ....++...||
T Consensus 148 ~~i~~va~--G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAA--TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEE--CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEc--cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 45555554 34566667889999999751 1110 111111 12247777765 44566667889
Q ss_pred cEEEEECCCCcee---------------EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC------------e
Q 005096 293 LVKLWDAKSGREL---------------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------K 345 (715)
Q Consensus 293 ~I~iwDl~s~~~~---------------~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~------------~ 345 (715)
.|+.|-......+ ..+ ....|..|+.. ....++.+.+|.|+.|-.... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 9999965431110 111 11346666543 445566667889999864321 1
Q ss_pred EE---EEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---------------------EEE--eeccC
Q 005096 346 EL---ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---------------------VEI--HNVHD 398 (715)
Q Consensus 346 ~~---~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---------------------~~~--~~~h~ 398 (715)
.+ ..+.. ....|..|+. +....++...||.|+.|-.+....+ ... .....
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~---G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~ 376 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAA---GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV 376 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEE---CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS
T ss_pred eeeccccccccCCccEEEEEe---CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC
Confidence 11 11111 2245666665 4556666688999999965432111 001 10011
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
..|..|+.. ....++...||.|+.|=.+..+.
T Consensus 377 ~~v~~Ia~G--~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 377 PKFKSVAAG--SHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTCT
T ss_pred CceEEEEeC--CCeEEEEeCCCcEEEeeCCCCCC
Confidence 156666654 44566668899999998776544
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.39 E-value=9.2 Score=40.37 Aligned_cols=187 Identities=10% Similarity=0.084 Sum_probs=109.9
Q ss_pred CccEEEEEEcCCCCEEEE--EeC-------------CCeEEEEeCCCC--ceEEEEecc------CCCEEEEEEc-C--C
Q 005096 144 RCSINRVLWTPTGRRLIT--GSQ-------------SGEFTLWNGQSF--NFEMILQAH------DHAIRSMVWS-H--N 197 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Lat--gs~-------------dg~I~Iwd~~~~--~~~~~l~~h------~~~V~~l~~s-p--d 197 (715)
--.|..+....++++-+. |.. .-+|.+||+.+. ++++++... ...+..+++. . +
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346778888777754332 211 125889999999 888887653 3457888887 2 1
Q ss_pred ----CCEEEEEe-CCCcEEEEeCCCCceeeeec----CC--------------CCCeEEEEEecC----CCEEEEEECCC
Q 005096 198 ----DNWMVSGD-DGGAIKYWQNNMNNVKANKS----AH--------------KESVRDLSFCRT----DLKFCSCSDDT 250 (715)
Q Consensus 198 ----g~~L~tgs-~dg~I~iwd~~~~~~~~~~~----~h--------------~~~I~~l~~spd----~~~Las~s~Dg 250 (715)
+.+++.++ .+..|.|+|+.+++..+.+. .. ...|..|+++++ ++.|+.....+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 34554444 46789999999887655442 00 246788888887 66776665544
Q ss_pred -cEEEEEC---CCC---eeEEEecccC--CceEEEEEc-CCCCEEEEEeCCCcEEEEECCC-C---ceeEEe--ccCCCc
Q 005096 251 -TVKVWDF---ARC---QEERSLTGHG--WDVKSVDWH-PTKSLLVSGGKDSLVKLWDAKS-G---RELCSF--HGHKNM 314 (715)
Q Consensus 251 -~V~iwdl---~~~---~~~~~l~~~~--~~I~si~~s-pdg~~L~sgs~Dg~I~iwDl~s-~---~~~~~~--~~~~~~ 314 (715)
.++-... ++. ..+..+-... ..-..++++ .+|.++++--.++.|..|+.++ . +....+ ...-.+
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~ 325 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF 325 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence 3333321 111 1122221111 233456675 6777777777888999999875 1 122222 122335
Q ss_pred eEEEEEcCCCCEEEEE
Q 005096 315 VLCVKWNQNGNWVLTA 330 (715)
Q Consensus 315 I~sl~~spdg~~Lasg 330 (715)
...+++..++.+.++.
T Consensus 326 pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 326 GTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cCeEEECCCCeEEEEE
Confidence 6777777666544444
No 381
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=93.20 E-value=8.7 Score=45.90 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-----CCeEEEEEccCCCCEEEEE---eCCCcEEEEEc
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSG---SLDGSIFHWLV 384 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~sg---s~DG~I~iwd~ 384 (715)
.+.+++...+..+|++-+.|+++|||++.+++++.+..... .........+..+.+|++. ..+|.+++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 46778888888999999999999999999999988754211 1122233344344444433 24567777765
No 382
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=92.98 E-value=11 Score=40.07 Aligned_cols=231 Identities=11% Similarity=0.011 Sum_probs=126.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
..|..|+.. ..+.+.-..||.|+.|-.+... ..-........|..|+. ...+.++.+.||.|+.
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~--G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEec--CCCeEEEEcCCCcEEE
Confidence 556666654 3455556688999999644310 00000112335655554 3456677788999999
Q ss_pred EEC--CCCee------------EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ce---------------
Q 005096 255 WDF--ARCQE------------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RE--------------- 304 (715)
Q Consensus 255 wdl--~~~~~------------~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~--------------- 304 (715)
|-. +..-. ...+ .....|..|+.. ....++...||.|+.|-.... +.
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred eeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 975 21110 1111 123457677665 345556668899999965431 10
Q ss_pred ------eEEecc------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------EEEEeecC---CCCeE
Q 005096 305 ------LCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-----------ELESFRGH---RKDVT 358 (715)
Q Consensus 305 ------~~~~~~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-----------~~~~~~~h---~~~V~ 358 (715)
...+.. ....|..|+.. ..+.++...||.|+.|-....- ....+... ...|.
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 000111 12346666654 3345555688999999754311 11112211 13466
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCC--------CceE---EEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHE--------TPQV---EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~--------~~~~---~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.|+. +....++-..||.|+.|-.+.. .... .... ....|..|+.. ....+....||.|+.|-.
T Consensus 290 ~ia~---G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G--~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 290 GFSG---GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACG--ASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp EEEE---CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred EEec---ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEEC--cceEEEEeCCCCEEEecC
Confidence 6665 5566666778999999965321 1111 1111 12367777654 445666678999999987
Q ss_pred CCCCC
Q 005096 428 NRPGD 432 (715)
Q Consensus 428 ~~~~~ 432 (715)
+..+.
T Consensus 364 n~~gq 368 (413)
T 1a12_A 364 GTNYQ 368 (413)
T ss_dssp CTTST
T ss_pred CCCCC
Confidence 76543
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.93 E-value=11 Score=44.91 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.|.+++...+..++++.+.|+++|||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999999887753
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=92.07 E-value=22 Score=41.43 Aligned_cols=146 Identities=7% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeecC-------CCCCeEEEEEecCC-CEEEEEECCCc----E
Q 005096 186 DHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTD-LKFCSCSDDTT----V 252 (715)
Q Consensus 186 ~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~~~~-------h~~~I~~l~~spd~-~~Las~s~Dg~----V 252 (715)
.+.|.+|++++. ...++++...+.|...+- .++.-..+.. ....|.+|++.+.+ +.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999986 356666776676655542 2332222222 12469999998743 44555543311 3
Q ss_pred EEEEC-CCCeeEEEecc---------cCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEecc------CCCce
Q 005096 253 KVWDF-ARCQEERSLTG---------HGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG------HKNMV 315 (715)
Q Consensus 253 ~iwdl-~~~~~~~~l~~---------~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~------~~~~I 315 (715)
.||.. +.++.-..+.. ....+..|++++.. +.++++...+.|. ...+.++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 34433 33332222211 01135678888753 4566665444332 22233333333321 12457
Q ss_pred EEEEEcC-CCCEEEEEECC
Q 005096 316 LCVKWNQ-NGNWVLTASKD 333 (715)
Q Consensus 316 ~sl~~sp-dg~~Lasgs~d 333 (715)
..|.+++ +.+.|+++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899987 44566666654
No 385
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=91.42 E-value=16 Score=38.65 Aligned_cols=227 Identities=8% Similarity=0.014 Sum_probs=122.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------c-eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------N-FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------------~-~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~ 211 (715)
..|..|+... .+.+.-..||.|+.|-.... . ....+ .....|..|+.. ..+.+.-..||.|+
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEE
Confidence 4577776643 35566678889999954321 0 01111 113466666653 34555567789999
Q ss_pred EEeC--CCC-ce----------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE---------------
Q 005096 212 YWQN--NMN-NV----------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--------------- 263 (715)
Q Consensus 212 iwd~--~~~-~~----------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~--------------- 263 (715)
.|-. +.. .+ .-........|..|+. -..+.++.+.||.|+.|-....-.+
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 9964 211 10 0011122345555554 3456667778999999976432110
Q ss_pred -------EEecc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEeccCC---CceE
Q 005096 264 -------RSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----------ELCSFHGHK---NMVL 316 (715)
Q Consensus 264 -------~~l~~------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-----------~~~~~~~~~---~~I~ 316 (715)
..+.. ....|..|+... ...++...||.|+.|-..... ....+.... ..|.
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 00110 123566666653 344455688999999654311 011121111 2366
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC---------e---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAM---------K---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~---------~---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.|+.. ..+.++...||.|+.|-.... + ....+.. ...|..|+. +....++...||.|+.|-.
T Consensus 290 ~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~---G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 290 GFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC---GASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp EEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE---CSSEEEEEETTSCEEEEEC
T ss_pred EEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE---CcceEEEEeCCCCEEEecC
Confidence 66543 345556668899999964321 1 1112222 226777765 5566666778999999976
Q ss_pred CC
Q 005096 385 GH 386 (715)
Q Consensus 385 ~~ 386 (715)
+.
T Consensus 364 n~ 365 (413)
T 1a12_A 364 GT 365 (413)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=90.65 E-value=14 Score=36.64 Aligned_cols=142 Identities=13% Similarity=-0.014 Sum_probs=81.6
Q ss_pred CEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE---CCC----Ccee---EEec
Q 005096 241 LKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD---AKS----GREL---CSFH 309 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD---l~s----~~~~---~~~~ 309 (715)
..+++.+.+|.|+--....... ...+. ..+.+..+........|+..+..|.++-+. +.. |+.+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3466778888887766543211 11222 233444444433444566667778766654 421 2211 1122
Q ss_pred cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
....|.++....++.+|+.++.+|.++...+.. +.....++.. ..+..+....+++..|+..+.+|.+..+
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234566664444667788999999999988743 3444445433 3454444442245678888999999888
Q ss_pred EcC
Q 005096 383 LVG 385 (715)
Q Consensus 383 d~~ 385 (715)
.++
T Consensus 160 ~~~ 162 (256)
T 1zvt_A 160 PVS 162 (256)
T ss_dssp EGG
T ss_pred EHH
Confidence 774
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=89.28 E-value=5.4 Score=39.68 Aligned_cols=143 Identities=8% Similarity=0.024 Sum_probs=83.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-------CeeE---EEecc
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEE---RSLTG 268 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-------~~~~---~~l~~ 268 (715)
..+++.+.+|.|+--...............+.+..+..+.....|+..+..|.++-+...+ +..+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 3456667778777655433211111112345566666666666788888889877765522 1111 1122
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEc-CCCCEEEEEECCCeEEEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWN-QNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~s-pdg~~Lasgs~dg~I~iwD 340 (715)
....|.++....++.+|+.++.+|.++...+.. +.....++. .+.+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566665444567788899999999987632 233333443 2345444454 3456788888899888888
Q ss_pred CCC
Q 005096 341 IRA 343 (715)
Q Consensus 341 l~t 343 (715)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 388
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=88.24 E-value=35 Score=37.71 Aligned_cols=270 Identities=9% Similarity=0.067 Sum_probs=139.4
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCe----------------------------EEEEeCCCCceEEEEecc--CCC---
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGE----------------------------FTLWNGQSFNFEMILQAH--DHA--- 188 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~----------------------------I~Iwd~~~~~~~~~l~~h--~~~--- 188 (715)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+++.+.++... .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 556688888888885 4777766665 778888888777665432 111
Q ss_pred ------------EEEEEEcCCC--CEEEEEe---CCCcEEEEeCCCCceeeeec--CCC-----------CCeEEEEEec
Q 005096 189 ------------IRSMVWSHND--NWMVSGD---DGGAIKYWQNNMNNVKANKS--AHK-----------ESVRDLSFCR 238 (715)
Q Consensus 189 ------------V~~l~~spdg--~~L~tgs---~dg~I~iwd~~~~~~~~~~~--~h~-----------~~I~~l~~sp 238 (715)
..++++. |+ -.++.+. ....|..||...+++..... ... ..+....+.-
T Consensus 257 WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred cccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 2333432 22 2233322 12347778877765543321 110 1233333444
Q ss_pred CCCE-EEEE----ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC--CEEEEEeCCC----cEEEEECCCCceeEE
Q 005096 239 TDLK-FCSC----SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK--SLLVSGGKDS----LVKLWDAKSGRELCS 307 (715)
Q Consensus 239 d~~~-Las~----s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg--~~L~sgs~Dg----~I~iwDl~s~~~~~~ 307 (715)
||+- |+.+ ..||++ +|... .+|...+....|.|+. ..++.+.+++ -..+.|.++++.+..
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~ 406 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWG 406 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEE
Confidence 4432 3322 223332 44432 2688888888888874 4666665542 356789999999988
Q ss_pred eccC--CCceEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 308 FHGH--KNMVLCVKWNQNGN--WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 308 ~~~~--~~~I~sl~~spdg~--~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.... .+......|.++.. -+.+ +. .||+.+ ++.+.... ....-..|-|.-+..+.|+- .+.|.-|+
T Consensus 407 ~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 407 VYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp ECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred cCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 7543 33444444555422 2222 22 466654 44443221 11122346666544344443 23677787
Q ss_pred cCCCCce--EEEee------ccCCCEEEEEEcCCC-CEEEEEE-CCCeEEEEecCCCCC
Q 005096 384 VGHETPQ--VEIHN------VHDNTVWDLAWHPIG-YLLCSGS-NDHTTKFWCRNRPGD 432 (715)
Q Consensus 384 ~~~~~~~--~~~~~------~h~~~V~~l~~spdg-~~L~sgs-~Dg~I~iWdl~~~~~ 432 (715)
...+... +.+.. ....++.+..+.-|. .-|+..+ .+..|+||.......
T Consensus 477 ~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 477 YQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp TTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred cCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 6554321 11110 012233444555552 3444444 455799998865544
No 389
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=87.17 E-value=43 Score=38.55 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=96.9
Q ss_pred CeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc-------CCceEEEEEcCC-CCEEEEEeCC-------Cc
Q 005096 230 SVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH-------GWDVKSVDWHPT-KSLLVSGGKD-------SL 293 (715)
Q Consensus 230 ~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-------~~~I~si~~spd-g~~L~sgs~D-------g~ 293 (715)
.|..|++++++ ..|+++...+.|+.++-. ++.-..+..+ ...|.+|+++|. .+.|+++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 78999999864 556667766777666532 2222222221 245899999983 3444444321 12
Q ss_pred EEEEEC-CCCceeEEecc-C--------CCceEEEEEcCC-CCEEEEEECC-CeEEEEECC---CCeEEEEeec------
Q 005096 294 VKLWDA-KSGRELCSFHG-H--------KNMVLCVKWNQN-GNWVLTASKD-QIIKLYDIR---AMKELESFRG------ 352 (715)
Q Consensus 294 I~iwDl-~s~~~~~~~~~-~--------~~~I~sl~~spd-g~~Lasgs~d-g~I~iwDl~---t~~~~~~~~~------ 352 (715)
..||.. +.++.-..+.. . ...+.+|+++|. .+.|+++... ..|. ...+ +++.+..+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~-~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLW-RSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEE-EESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEE-EeCCCCcceecccCCCCCccccc
Confidence 445543 33433222211 1 112467889884 4666666633 2222 2222 2333222111
Q ss_pred --------CCCCeEEEEEccCCC------CEEEEEeCCCcEEEEEcCCCCceEEEeec-cCC-CEEEEEEcCCCCEEEEE
Q 005096 353 --------HRKDVTALAWHPFHE------EYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDN-TVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 353 --------h~~~V~~l~~sp~~~------~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-h~~-~V~~l~~spdg~~L~sg 416 (715)
....+..+.+++.+. ..|+++..++...||.............. ... ....+.+++++.++++.
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~ 261 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYITY 261 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEEE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEEe
Confidence 113477788877442 25555555543234544443333333221 111 22455677766655554
Q ss_pred EC-------CCeEEEEecCCCC
Q 005096 417 SN-------DHTTKFWCRNRPG 431 (715)
Q Consensus 417 s~-------Dg~I~iWdl~~~~ 431 (715)
.. +..-.||..+..+
T Consensus 262 ~d~~g~y~~~~~g~v~~s~d~G 283 (737)
T 2cn3_A 262 GDTCGPYDGNGKGQVWKFNTRT 283 (737)
T ss_dssp ESSCCSSCCSCCEEEEEEETTT
T ss_pred cCCCCccccccCceEEEEeCCC
Confidence 32 1344566554433
No 390
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=86.57 E-value=39 Score=36.49 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=99.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCce------------eeeec-CCCCCeEEEEEecCCCEEEEEECCC
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---MNNV------------KANKS-AHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---~~~~------------~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
..|..|+.. ....++-..||.|+.|-.. .+.+ ...+. .....|..|+. ...+.++.+.+|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCCC
Confidence 456666654 3445555678999999641 1110 01111 11223666555 445677778899
Q ss_pred cEEEEECCCCeeEE-------------EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c-----------ee
Q 005096 251 TVKVWDFARCQEER-------------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R-----------EL 305 (715)
Q Consensus 251 ~V~iwdl~~~~~~~-------------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~-----------~~ 305 (715)
.|+.|-......+- ........|..|+.. ....++...||.|+.|-.... + .+
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCcee
Confidence 99999754321100 000011356667665 345555667899999954321 1 11
Q ss_pred ---EEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--------------------eE--E---EEeecCCCC
Q 005096 306 ---CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--------------------KE--L---ESFRGHRKD 356 (715)
Q Consensus 306 ---~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--------------------~~--~---~~~~~h~~~ 356 (715)
..+.. ....|..|+.. ....++...||.|+.|-.... +. + ..+. ....
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~-~~~~ 378 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN-NVPK 378 (473)
T ss_dssp EEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-SSCC
T ss_pred eccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-CCCc
Confidence 11111 12346666543 334455567888888864321 00 0 1111 1125
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
|..|+. +....++...||.|+.|-.+.
T Consensus 379 v~~Ia~---G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 379 FKSVAA---GSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred eEEEEe---CCCeEEEEeCCCcEEEeeCCC
Confidence 666665 556666668899999997654
No 391
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=77.05 E-value=56 Score=37.29 Aligned_cols=68 Identities=9% Similarity=0.167 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-------------CeEEEEEccCCCCEEEEEe--CCCc
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-------------DVTALAWHPFHEEYFVSGS--LDGS 378 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~-------------~V~~l~~sp~~~~~l~sgs--~DG~ 378 (715)
.|.++.+ +..+|++-+.|.++|+||+++++++.+...... .-.-+... +.++++-. .+|.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~---~~~lv~y~P~~~G~ 297 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY---NNTLVTLLPLENGL 297 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEES---SSEEEEEETTTTCE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhe---eeEEEEEecCCCCe
Confidence 4666555 477999999999999999999998877664211 00111111 24555443 5678
Q ss_pred EEEEEcCC
Q 005096 379 IFHWLVGH 386 (715)
Q Consensus 379 I~iwd~~~ 386 (715)
.++|++..
T Consensus 298 Fk~~~l~~ 305 (729)
T 3f7f_A 298 FQMGTLLV 305 (729)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 99998844
No 392
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=75.88 E-value=1e+02 Score=34.19 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=85.7
Q ss_pred ccCCceEEEEEcCCC--CEEEEEeCC----CcEEEEECCCCceeEEeccCC--CceEEEEEcCCC--CEEEEEEC---CC
Q 005096 268 GHGWDVKSVDWHPTK--SLLVSGGKD----SLVKLWDAKSGRELCSFHGHK--NMVLCVKWNQNG--NWVLTASK---DQ 334 (715)
Q Consensus 268 ~~~~~I~si~~spdg--~~L~sgs~D----g~I~iwDl~s~~~~~~~~~~~--~~I~sl~~spdg--~~Lasgs~---dg 334 (715)
+|...+..-.|.|+. -.++.+.++ .-+.++|.++++.+....... +....-.|.++. --+.+... ++
T Consensus 365 gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~~pG~E~w~~~~~~~~~ 444 (620)
T 2zuy_A 365 GHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGIDPPGNDG 444 (620)
T ss_dssp CCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTTSSSCEEEEECCTTSCC
T ss_pred CCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCCCCceEEEEeccccccc
Confidence 678888888888873 355555554 246789999999998875433 333344455542 22333220 11
Q ss_pred -eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeec---------cCC
Q 005096 335 -IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNV---------HDN 399 (715)
Q Consensus 335 -~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~---------h~~ 399 (715)
.-.||+.. ++.+.... ....-..|-|.-+-.+.|+-++.+ +.|.-|+...+... .++.. ...
T Consensus 445 ~~~~l~~~~-G~~i~~~~-p~~~N~~i~WdGDl~re~ld~~~~~~~~~~~i~k~~~~~~~~~-~l~t~~g~~snngTk~~ 521 (620)
T 2zuy_A 445 MSYGLFTSK-GEKISDKA-PSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGCLK-TIFQPAGVLSNNGTKGN 521 (620)
T ss_dssp CEEEEEETT-CCEEESSC-CSCCSEEECCSSSSSCEEEEEEECSSCEEEEEEEEETTTTEEE-EEECCTTEECBSGGGCB
T ss_pred CCCceECCC-CCCccCCC-CCCcceEEEECCCccHhhhCCccccccCCceEEeccCCCCcee-EEEEeecccccCCCcCC
Confidence 23577764 55554221 112233566765555566655444 56777776544321 22211 112
Q ss_pred CEEEEEEcCC-CCEEEEE-ECCCeEEEEecCCCCC
Q 005096 400 TVWDLAWHPI-GYLLCSG-SNDHTTKFWCRNRPGD 432 (715)
Q Consensus 400 ~V~~l~~spd-g~~L~sg-s~Dg~I~iWdl~~~~~ 432 (715)
+.....+.-| .+-|+.- ..+..|+||.......
T Consensus 522 P~l~aDi~GDWREEvi~~t~D~~~LrIYtt~~pT~ 556 (620)
T 2zuy_A 522 PVLQANLFGDWREEVIWRTEDSSALRIYTTTHLTR 556 (620)
T ss_dssp CSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred cceeecccccCeeeEEEEcCCCCeEEEEeCCCCCC
Confidence 2333344444 2344444 4456799998766544
No 393
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.37 E-value=58 Score=39.62 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
.+.+++...+..+|++-+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34555666788899999999999999999999988754
No 394
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.97 E-value=69 Score=38.94 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+.+++...+..+|++.+.|+++||||+++++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556666778899999999999999999999987754
No 395
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=71.88 E-value=73 Score=36.14 Aligned_cols=147 Identities=11% Similarity=-0.048 Sum_probs=77.9
Q ss_pred cCCCEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE---ECCCC----ceeEEec
Q 005096 238 RTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW---DAKSG----RELCSFH 309 (715)
Q Consensus 238 pd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw---Dl~s~----~~~~~~~ 309 (715)
++...+++.+.+|.|+--.-.... ....+. ..+.+..+........|+.-++.|.++.. ++..+ +.+..+-
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k-~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ll 548 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL 548 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC----------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTS
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccC-CCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHhcc
Confidence 455667888889988762110000 001111 22334344333344455555666765443 33222 2221111
Q ss_pred --cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 310 --GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 310 --~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
.....|.++....+..+|+.++..|.|+...+.. +.....+... ..+..+....+++..++..+.+|.+.
T Consensus 549 ~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~-d~lv~~~~~~~~~~~v~l~t~~g~~l 627 (716)
T 1zvu_A 549 TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRML 627 (716)
T ss_dssp CCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEE
T ss_pred CCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCC-CEEEEEEEecCCCCEEEEEeCCCeEE
Confidence 1234566665555678899999999999987743 3333444433 33444444422566788889999999
Q ss_pred EEEcCC
Q 005096 381 HWLVGH 386 (715)
Q Consensus 381 iwd~~~ 386 (715)
.|+...
T Consensus 628 rf~~~~ 633 (716)
T 1zvu_A 628 MFPVSD 633 (716)
T ss_dssp EEESTT
T ss_pred EEEHHH
Confidence 998754
No 396
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=69.51 E-value=1.4e+02 Score=33.93 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=48.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEc-CCCCEEEEEeCCCcEEEEEC
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~s-pdg~~L~sgs~Dg~I~iwDl 299 (715)
...|..+....++.+|+.++.+|.|+...+... .....+.. .+.+..+... ..+..++..+.+|.+..|+.
T Consensus 553 ~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 553 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEES
T ss_pred CCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEH
Confidence 456666655557788999999999999887432 22233332 3344444444 34557888899999999987
Q ss_pred CC
Q 005096 300 KS 301 (715)
Q Consensus 300 ~s 301 (715)
..
T Consensus 632 ~~ 633 (716)
T 1zvu_A 632 SD 633 (716)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 397
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=69.35 E-value=1.4e+02 Score=32.94 Aligned_cols=177 Identities=8% Similarity=0.074 Sum_probs=94.5
Q ss_pred eEEEEeCCCCceEEEEec--------cCCCEEEEEEcCCCC-EEEEEeCCCc----------------------------
Q 005096 167 EFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHNDN-WMVSGDDGGA---------------------------- 209 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~-~L~tgs~dg~---------------------------- 209 (715)
.|.+|+++ ++.+..+.. |...+....|.-||+ -|++...+|+
T Consensus 152 ~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 46677775 444444432 333455666666663 4555555554
Q ss_pred EEEEeCCCCceeeeecCC--CCC---------------eEEEEEec-CCCEEEEEE---CCCcEEEEECCCCeeEEEe--
Q 005096 210 IKYWQNNMNNVKANKSAH--KES---------------VRDLSFCR-TDLKFCSCS---DDTTVKVWDFARCQEERSL-- 266 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h--~~~---------------I~~l~~sp-d~~~Las~s---~Dg~V~iwdl~~~~~~~~l-- 266 (715)
|.|+|-.+++.+.+.... ... ..++++.. +.-.++.+- ....|..||.+.++.....
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 778887777766554321 111 12333321 112233332 1235888888776654332
Q ss_pred cccC-----------CceEEEEEcCCCC-EEEEEe----CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC--CEEE
Q 005096 267 TGHG-----------WDVKSVDWHPTKS-LLVSGG----KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG--NWVL 328 (715)
Q Consensus 267 ~~~~-----------~~I~si~~spdg~-~L~sgs----~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg--~~La 328 (715)
.... ..+....++-||+ -|+.|+ .||++ +|... .+|...+....|.|+. --++
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~ 381 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVF 381 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEE
Confidence 2110 2344445555554 343332 33333 44432 2677778888888863 4566
Q ss_pred EEECCC----eEEEEECCCCeEEEEeecC
Q 005096 329 TASKDQ----IIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 329 sgs~dg----~I~iwDl~t~~~~~~~~~h 353 (715)
.+.+++ -..+.|.++++.+......
T Consensus 382 ~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 382 QVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp EECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred EEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 665542 3557899999999887643
No 398
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=69.07 E-value=95 Score=30.85 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg~I~iwd~~~~~~~~~~~ 225 (715)
..++-|-+++++++.. ... .||-......+....++... .+.++.+|++++. ...++. .||........ .
T Consensus 35 ~F~lgf~~~~~~~ly~--~~~-vvW~Anr~~p~~~~~~~~~~--~l~l~~~G~Lvl~~~~~~~~-~vWst~~~~~~---~ 105 (276)
T 3m7h_A 35 RFKLLLQGDGNLVIQD--NGA-TVWVANEQQPFSSTIPLRNK--KAPLAFYVQYGAFLDDYSRR-RVWLTDNSTFT---S 105 (276)
T ss_dssp SEEEEECTTSCEEEEE--TTE-EEEECSTTSTTEEEEECCCT--TCCSEEEESSSEEEEEGGGT-EEEEECCCCCC---C
T ss_pred cEEEEEECCCCeEEEC--CCC-eEEECCCCCCcCCcccccce--EEEEeCCCcEEEEEeCCCCC-EEEEeCCCccc---c
Confidence 3455555555543332 334 67866554433322111111 1334446665553 233344 37765432100 0
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
........+.+..+|++++.. .-.+|.-
T Consensus 106 ~~~~~~~~a~L~d~GNlVl~~----~~~lWqS 133 (276)
T 3m7h_A 106 NDQWNRTHLVLQDDGNIVLVD----SLALWNG 133 (276)
T ss_dssp TTHHHHEEEEECTTSCEEEEE----EEEEEES
T ss_pred cccCCceEEEEeCCCCEEecC----CceeeCc
Confidence 000123455666677766653 3457764
No 399
>4ftd_A Uncharacterized protein; 6-bladed-beta-propeller, immunoglobulin-like, carbohydrate metabolism, structural genomics; 1.91A {Bacteroides eggerthii}
Probab=66.17 E-value=1.4e+02 Score=31.76 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=76.0
Q ss_pred EEEEEEcCCCCEEEE---EeCCCcEEEEeCCCC----ceeeeecCC---C-----CCeEEEEEecCCCEEEEEECC--Cc
Q 005096 189 IRSMVWSHNDNWMVS---GDDGGAIKYWQNNMN----NVKANKSAH---K-----ESVRDLSFCRTDLKFCSCSDD--TT 251 (715)
Q Consensus 189 V~~l~~spdg~~L~t---gs~dg~I~iwd~~~~----~~~~~~~~h---~-----~~I~~l~~spd~~~Las~s~D--g~ 251 (715)
+.++.-..++..|++ +...+.++||.+.+. +++..+... . +.-.++.-..+++-+++.... ..
T Consensus 191 ~~~m~a~~~G~Iy~anLsg~~gs~fkIYrW~~~ts~Pe~i~s~~v~~~~gTg~R~Gd~isv~GD~~gNa~I~~~~n~s~~ 270 (453)
T 4ftd_A 191 DYNMGALINGHVYLSSLSGGKVSPFKIYYWETPTSNPEVIANINVGNIPGAGNRHGDNASYNIDENGNGFIFFGDNAATE 270 (453)
T ss_dssp EEEEEEEETTEEEEEEEBCSTTSCEEEEEESSTTSCCEEEEEECGGGSTTCCSCBCSCCEEEECTTSCEEEEEEBTTSSE
T ss_pred EEEEEEecCCCEEEEeccCCCCCceEEEEeCCCCCCceeEEEeccccCCcccccccceEEEEEcCCCCEEEEECCCCcee
Confidence 344555556766654 234456777765542 222222210 0 112344555555554444443 35
Q ss_pred EEEEECCCCeeE-------EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC
Q 005096 252 VKVWDFARCQEE-------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ 322 (715)
Q Consensus 252 V~iwdl~~~~~~-------~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp 322 (715)
+.+|.+..+... ............+.+--+-.+.+..+.+-.+.+++.. +....... ........+.|+
T Consensus 271 ~~rwtVtng~l~~~~~~~v~~~~~~g~~~~~v~~~gnT~~y~~sg~~~p~~Ly~~~-g~~~~~sai~~~a~~~~vv~FN- 348 (453)
T 4ftd_A 271 FLKVPISGHKTVDIGNIKVLPSKSDATMVTNVYRVGDTDQYLWSGIRVPVTLVDES-LGEKYKSKIAGEAVAPKVVTFN- 348 (453)
T ss_dssp EEEEEEETTTEECGGGCEEEECCGGGCSSEEEEECTTSSCEEEEETTEEEEEECTT-CCEEEECSCCTTEEEEEEEEET-
T ss_pred EEEEEEECCeEcCCCCceeeccCCCceeeeeeEEcCcccceeeccccCceeEEecC-CCEEEeeeccccCCCcceEEEc-
Confidence 778887665442 1112223334555554332333344444567777755 33322211 112234445565
Q ss_pred CCCEEEEEE--------CCCeEEEEECCCCeE
Q 005096 323 NGNWVLTAS--------KDQIIKLYDIRAMKE 346 (715)
Q Consensus 323 dg~~Lasgs--------~dg~I~iwDl~t~~~ 346 (715)
..+||++++ .+..|+|||+.++..
T Consensus 349 ~~rYLi~~~~~~~g~~~~~~~l~vYDIS~g~~ 380 (453)
T 4ftd_A 349 EERYLLVCTAGQGAASKASIALEVYDLTKGET 380 (453)
T ss_dssp TEEEEEEEECCBSTTCCCCCEEEEEECCSSSS
T ss_pred cccEEEEEEecccCccCCCceEEEEECCCCcc
Confidence 456666543 233899999987664
No 400
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=63.94 E-value=2.6 Score=36.48 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=31.2
Q ss_pred ecCCCCccCCC------CCCCCCCCCCCC-CCCCCCCCCcccCCCc
Q 005096 455 GRMPGNFPLPE------GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 493 (715)
Q Consensus 455 ~~~~~~~~~~~------~~~~~g~~~~g~-gr~~gtv~Gy~~~~~l 493 (715)
.|..||.+... ...+.|+.|.|+ +|..++++||.|+.+|
T Consensus 12 ~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l 57 (116)
T 1vyd_A 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSI 57 (116)
T ss_dssp GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHH
T ss_pred cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHH
Confidence 35567766654 456789999999 9999999999998765
No 401
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=63.94 E-value=1.8e+02 Score=32.13 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeec-------------------CC----CC--CeEEEEEecCCCEEEEEEC---C
Q 005096 198 DNWMVSGDDGGAIKYWQNNMNNVKANKS-------------------AH----KE--SVRDLSFCRTDLKFCSCSD---D 249 (715)
Q Consensus 198 g~~L~tgs~dg~I~iwd~~~~~~~~~~~-------------------~h----~~--~I~~l~~spd~~~Las~s~---D 249 (715)
...|++|+.||.++.+|.. ++++..+. .| .. .+..+.+....+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3577888899999988766 43322220 01 01 1222322211133444442 2
Q ss_pred CcEEEEECCC---CeeEEEeccc-------CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeccCC
Q 005096 250 TTVKVWDFAR---CQEERSLTGH-------GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 250 g~V~iwdl~~---~~~~~~l~~~-------~~~I~si~~spdg~~L~sgs~-------Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
..++..|+.+ .+.+.++... .-.--.|.--.+++.+++-+. ...|+|+|++++..+.++....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 3577777754 3333343311 111112333335665443322 3479999999999988875221
Q ss_pred -----CceEEEEE-cCC--C--CEEEEEECCCeEEEEECCCCe
Q 005096 313 -----NMVLCVKW-NQN--G--NWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 313 -----~~I~sl~~-spd--g--~~Lasgs~dg~I~iwDl~t~~ 345 (715)
..+..++. ..| + .+++++...|.|.-+|+....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 22334433 223 3 579999999999999997643
No 402
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.51 E-value=1e+02 Score=34.15 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCceeEEecc-CCCceEEEEEcCCCCEEEEEE
Q 005096 272 DVKSVDWHPTKSLLVSGGK------------DSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~------------Dg~I~iwDl~s~~~~~~~~~-~~~~I~sl~~spdg~~Lasgs 331 (715)
....|+|+++|.+.++... .+.|..+|..+++....+.. ....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567999999987664322 12567777777776555543 246799999999999888764
No 403
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=59.75 E-value=2.4e+02 Score=32.29 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=74.6
Q ss_pred CCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecc------------cCCceEEEEEcCC-CCEEEEEeCC-
Q 005096 227 HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTG------------HGWDVKSVDWHPT-KSLLVSGGKD- 291 (715)
Q Consensus 227 h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~------------~~~~I~si~~spd-g~~L~sgs~D- 291 (715)
....|.+|++++.+ +.++++...+.|...+= .++.-..+.. ....|.+|++++. .+.|+++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999866 56777776666655442 2222222211 2245889999883 3444443321
Q ss_pred ----CcEEEE-ECCCCceeEEecc-C------CC--ceEEEEEcCC-CCEEEEEECCCeEEEEECCCC---eEEEEeec-
Q 005096 292 ----SLVKLW-DAKSGRELCSFHG-H------KN--MVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM---KELESFRG- 352 (715)
Q Consensus 292 ----g~I~iw-Dl~s~~~~~~~~~-~------~~--~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~---~~~~~~~~- 352 (715)
....|| ..+.++.-..+.. . .. ....|++++. .+.++++..++.|.. ..+.+ +.+..+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCccc
Confidence 123344 3333433222211 0 11 1146788774 345555555443332 22222 33221111
Q ss_pred --CCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 353 --HRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 353 --h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
....+..|++++.+...|+++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1134778899886666566666555
No 404
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=57.48 E-value=1.7e+02 Score=29.70 Aligned_cols=112 Identities=8% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCCEEEEEEcCCC---CEEEEEeCCCcEE--EEeCCCCceeeee------cCCCCCeEEEEEecC---CCEE--EEE---
Q 005096 186 DHAIRSMVWSHND---NWMVSGDDGGAIK--YWQNNMNNVKANK------SAHKESVRDLSFCRT---DLKF--CSC--- 246 (715)
Q Consensus 186 ~~~V~~l~~spdg---~~L~tgs~dg~I~--iwd~~~~~~~~~~------~~h~~~I~~l~~spd---~~~L--as~--- 246 (715)
...+.++.|..++ -.|+.-+.|+.|. +|+. .+=....+ ......+.+++|..+ ...| +.-
T Consensus 60 ~SplAAv~~~~~~~~~i~Vfy~~~dn~l~e~~~~~-~~W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~ 138 (312)
T 1ofz_A 60 FSPLAAVTWKSAQGIQIRVYCVNKDNILSEFVYDG-SKWITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSN 138 (312)
T ss_dssp TCCCEEEEEEETTEEEEEEEEECTTCBEEEEEEES-SCEEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCC
T ss_pred CCCceEEEecCCCCCEEEEEEECCCCcEEEEEecC-CCccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEecc
Confidence 3466677664322 2345556677664 3443 11111111 124567777777533 2233 322
Q ss_pred ECCCcEEE--EECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCCcEE--EEEC
Q 005096 247 SDDTTVKV--WDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVK--LWDA 299 (715)
Q Consensus 247 s~Dg~V~i--wdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg~I~--iwDl 299 (715)
..|+.|.. ||-. ...-..+. .....+.++.|.++.-.|+..+.|+.|+ .||-
T Consensus 139 ~~dn~I~e~~~~g~-W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~dn~i~~~~~d~ 196 (312)
T 1ofz_A 139 LSGSSIHEYVWSGK-WTAGASFGSTAPGTGIGATAIGPGRLRIYYQATDNKIREHCWDS 196 (312)
T ss_dssp STTEEEEEEEESSS-EEEEEEEEEESTTCCEEEEEEETTEEEEEEEBTTSEEEEEEESS
T ss_pred CCCCeEEEEEccCC-cccCCCcCCccCCCCcceeecCCCCEEEEEEcCCCcEEEEEecC
Confidence 34555533 3322 22222221 1234577777765444555666777774 5553
No 405
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=55.97 E-value=2.8e+02 Score=31.79 Aligned_cols=235 Identities=9% Similarity=-0.062 Sum_probs=102.9
Q ss_pred CEEEEEEcCCC--CEEEEEeCC---------CcEEEEeCCCCceeeeecCC-----CCCeEEEEEecCCC-EEEEEEC--
Q 005096 188 AIRSMVWSHND--NWMVSGDDG---------GAIKYWQNNMNNVKANKSAH-----KESVRDLSFCRTDL-KFCSCSD-- 248 (715)
Q Consensus 188 ~V~~l~~spdg--~~L~tgs~d---------g~I~iwd~~~~~~~~~~~~h-----~~~I~~l~~spd~~-~Las~s~-- 248 (715)
.+..++|++.. .++.++..| +.|.+- .+.++........ ...+..+++++++. .+.+++.
T Consensus 488 ~~~~i~~a~~~~~~~~~vG~~d~~~~~~~~~g~i~~S-~DgG~tW~~~~~~~~g~~~~~~~~i~v~~~~~~~~~~~~~~~ 566 (763)
T 3a0f_A 488 STDGLDFAGRAANVLARVGRNDHPDAGVAGCTQGAYT-TNSGDSWTLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKAD 566 (763)
T ss_dssp EEEEEEEETTEEEEEEEEEECSSCCTTCCSCTTEEEE-SSTTSSCEECSSCCTTCBTTBCCEEEECTTSSCEEEECSSCC
T ss_pred cccceEeccCCCcEEEEEeCCCcccccccCCCcEEEE-CCCCcCCccCCCCCcccccCCcceEEEecCCCcEEEEecccC
Confidence 46788888653 355666664 666543 3333322222111 23466778887654 4555542
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEec-cCC---CceEEEEEcC-
Q 005096 249 DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFH-GHK---NMVLCVKWNQ- 322 (715)
Q Consensus 249 Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~---~~I~sl~~sp- 322 (715)
++.|. ...+.++.-..+......+..|+.++. .+.|+++ .++.|++ ..+.++.-..+. ... .....|..++
T Consensus 567 ~~~v~-~S~D~G~tW~~~~~l~~~~~~i~~d~~~~~~~y~g-~~g~v~~-S~DgG~tW~~~~~~lp~~~~~~~~i~~~~~ 643 (763)
T 3a0f_A 567 GKGPY-TSSDYGKTWTAPSGLSKQTTGIAADRVQANTFYVY-VEGDFFV-STDGGKSYTKKGNGLPCCWTYTGTPVTSNL 643 (763)
T ss_dssp SSCCE-EESSTTSCCBCCBSCCCCCSCEEECSSSTTCEEEE-ETTEEEE-ESSTTSBCEEECBTSCCSSCCCEEEEECSS
T ss_pred CCceE-EeCCCCCCCeecCCCCCCcceEEEeccCCCEEEEE-cCCCEEE-EeCCCcCccccccCCCcccCccccEEECCC
Confidence 43332 122222222222222222355666664 3455555 4565543 334444433332 111 1111267776
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCe-EEEEE----ccC-CCCEEEEE--eCCCcEEEEEcCCCCceEEE
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDV-TALAW----HPF-HEEYFVSG--SLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V-~~l~~----sp~-~~~~l~sg--s~DG~I~iwd~~~~~~~~~~ 393 (715)
+...|+++...+.|..- ...++....+.... ... ..+.| ... ...+++++ ..++...||...........
T Consensus 644 ~~~~l~~~~~~~~l~~S-~D~G~tW~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~~~~~~~gl~~S~D~G~tW~~ 722 (763)
T 3a0f_A 644 RAGELWVSVKGVGIYHS-TDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIPSASQPEGLYMSTDNGGLWTR 722 (763)
T ss_dssp STTCEEEEETTTEEEEE-SSTTSBCEECTTBTTTBEEEEEEEECCSSTTSSCEEEEEEECSTTSCSEEEEESSTTSCCEE
T ss_pred CCCcEEEEcCCCeEEEE-cCCCCCceEccCCCcccccceeEEeeecCCCCCceEEEEEEcccCCCcEEEEeCCCCCCcEe
Confidence 33344445555544332 22334444443211 121 01222 111 23455555 22222334444333333333
Q ss_pred eec--c-CCCEEEEEEcCCC-CEEEEEECCCeEEEEec
Q 005096 394 HNV--H-DNTVWDLAWHPIG-YLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 394 ~~~--h-~~~V~~l~~spdg-~~L~sgs~Dg~I~iWdl 427 (715)
+.. | -..|..|..++.. ..|+.++..+-|.+=++
T Consensus 723 ~~~~~~~~~~~~~i~~~p~~~~~v~~~T~GrGi~~g~~ 760 (763)
T 3a0f_A 723 LNDDAHNYGGATVISGDPRIYGRVYIGMNGRGIICAQA 760 (763)
T ss_dssp CSCTTCCTBCEEEEEECTTSTTEEEEEEBSSCEEEEES
T ss_pred ccCccccCCCcceEEeCCCCCCEEEEeCCCCeEEEEec
Confidence 321 1 1345578888753 45666666655655544
No 406
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.57 E-value=1.7e+02 Score=32.67 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeEEecc-CCCceEEEEEcCCCCEEEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKD------------SLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~D------------g~I~iwDl~s~~~~~~~~~-~~~~I~sl~~spdg~~Lasg 330 (715)
.-.|+|+++|+++++-..+ +.+.+.+..+++..+.+.. ...+++.++|++|++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3578999999966654332 2355566667766555543 35789999999999988775
No 407
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=52.45 E-value=70 Score=26.93 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=15.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+.+..+|++++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3567777887666532 4443 676544
No 408
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.01 E-value=51 Score=36.86 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=43.5
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEE
Q 005096 147 INRVLWTPTGRRLITGSQS------------GEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSG 204 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~d------------g~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tg 204 (715)
.--|+|+++|+++++-..+ ..+.+.+..++++.+.+.... ..++.++|++|++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999866655432 246666777888887777654 568999999999988765
No 409
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=48.51 E-value=1.2e+02 Score=25.41 Aligned_cols=25 Identities=4% Similarity=-0.083 Sum_probs=11.1
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.+.+.. ++++++.. .++.+ +|...+
T Consensus 60 ~l~l~~-dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGH-SGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEECT-TSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEeC-CCcEEEEC-CCCCE-EEECCC
Confidence 344443 45555442 23333 565443
No 410
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=44.23 E-value=8.4 Score=34.09 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=30.8
Q ss_pred cCCCCccCCC------CCCCCCCCCCCC-CCCCCCCCCcccCCCc
Q 005096 456 RMPGNFPLPE------GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 493 (715)
Q Consensus 456 ~~~~~~~~~~------~~~~~g~~~~g~-gr~~gtv~Gy~~~~~l 493 (715)
|..||.+... ...+.|+.|.|+ +|..+++.||.|+.++
T Consensus 15 C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l 59 (134)
T 2bh4_X 15 CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGI 59 (134)
T ss_dssp TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHH
T ss_pred hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHH
Confidence 6667777655 567889999999 9999999999997554
No 411
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.76 E-value=89 Score=34.68 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=45.1
Q ss_pred ccEEEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEe
Q 005096 145 CSINRVLWTPTGRRLITGSQ------------SGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~------------dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs 205 (715)
..-..|+|+++|.+.++... ...|..++..++++...+... ...++.++|++|++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45778999999987774432 125777787778877777653 35689999999999887753
No 412
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=43.53 E-value=3.7e+02 Score=29.62 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=83.0
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEEEec------------c-------c-----C-CceEEEEEcCCCCEEEEEeC---C
Q 005096 240 DLKFCSCSDDTTVKVWDFARCQEERSLT------------G-------H-----G-WDVKSVDWHPTKSLLVSGGK---D 291 (715)
Q Consensus 240 ~~~Las~s~Dg~V~iwdl~~~~~~~~l~------------~-------~-----~-~~I~si~~spdg~~L~sgs~---D 291 (715)
...|++++.||.++.+|.. ++++..+. . | . -.+..+.+...-+.+++++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 4678889999999999876 55433221 0 1 0 11233333221233444432 2
Q ss_pred CcEEEEECCC---CceeEEeccCC-------CceEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEeecCC
Q 005096 292 SLVKLWDAKS---GRELCSFHGHK-------NMVLCVKWNQNGNWVLTASK-------DQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 292 g~I~iwDl~s---~~~~~~~~~~~-------~~I~sl~~spdg~~Lasgs~-------dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
..++..|+.+ .+.+.++.... -.--.|.--.+++++++-+. ...|.|+|+.++..+.++....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 2466667664 34444443111 01112333346777665332 3479999999999998876332
Q ss_pred -----CCeEEEEEccCCC----CEEEEEeCCCcEEEEEcCCCC
Q 005096 355 -----KDVTALAWHPFHE----EYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 355 -----~~V~~l~~sp~~~----~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..+..++....+. +++..|...|.|.-+|+....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 2344444432122 478999999999999986643
No 413
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=40.05 E-value=1.4e+02 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=13.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
.+.+..||++++... ++. .||...
T Consensus 54 ~L~l~~dGnLvL~d~-~~~-~vWss~ 77 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDS-SGR-SLWASH 77 (105)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECC
T ss_pred EEEEeCCccEEEECC-CcE-EEEEec
Confidence 467777777665532 333 356544
No 414
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=38.12 E-value=4.5e+02 Score=29.01 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=24.8
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC
Q 005096 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (715)
Q Consensus 231 I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~ 270 (715)
|++|.+...+..++..++...|...|- +++.+..+.++.
T Consensus 357 iNsv~~d~~dd~~liSsR~~~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 357 VNSIAYDAKDDSIILSSRHQGVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEET-TSCEEEEESCST
T ss_pred ecceeEcCCCCEEEEECCccEEEEEcC-CCcEEEEECCCC
Confidence 888988875544444444447766674 677776665443
No 415
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=38.08 E-value=4.6e+02 Score=29.10 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=56.2
Q ss_pred CcEEEEECCCCeeEEE--eccc-----------CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEe-ccCCCc
Q 005096 250 TTVKVWDFARCQEERS--LTGH-----------GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSF-HGHKNM 314 (715)
Q Consensus 250 g~V~iwdl~~~~~~~~--l~~~-----------~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~~~ 314 (715)
..|..||+..++.... +... ...+....+.-||+ -|+.++ .++| .+|+.+... .+|...
T Consensus 296 ~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD-~dG~~L~st~~gHGDa 369 (620)
T 2zuy_A 296 TVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA-----MAVD-HDGTGLYSTGLGHGDA 369 (620)
T ss_dssp CEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT-----EEEC-TTSSEEEECSCCCCSC
T ss_pred eeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEee-----eEEC-CCCCEEeecCCCCCce
Confidence 4577788766654332 2211 02233444455554 333332 1233 233333333 257777
Q ss_pred eEEEEEcCC--CCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 315 VLCVKWNQN--GNWVLTASKD----QIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 315 I~sl~~spd--g~~Lasgs~d----g~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+....|.|+ +-.++.+.++ .-+.++|.++++.+.........-.++
T Consensus 370 ~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~ 421 (620)
T 2zuy_A 370 MHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGM 421 (620)
T ss_dssp EEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred eEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceE
Confidence 777778886 3445555544 256788999999998876543333333
No 416
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.87 E-value=43 Score=38.23 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=31.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA 184 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~ 184 (715)
..|.|+.+ +..+|++-+.|.++|+||++++.++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666666 367999999999999999999988877665
No 417
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=37.08 E-value=4.1e+02 Score=28.30 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=71.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCC-----ceEEEEecc------CCCEEEEEEcCCC---------CEEEEEeCCCcE
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSF-----NFEMILQAH------DHAIRSMVWSHND---------NWMVSGDDGGAI 210 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~-----~~~~~l~~h------~~~V~~l~~spdg---------~~L~tgs~dg~I 210 (715)
.++ +..+.++.+.+ .+.||+.... ...+.+..+ .....++.+.... .+|++. -+|.|
T Consensus 44 ~i~-~~GyAlvv~~~-~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVs-ptG~V 120 (450)
T 1xks_A 44 NID-EGGWACLVCKE-KLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVAT-REGSI 120 (450)
T ss_dssp EEC-TTSEEEEEETT-EEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEEC-TTCEE
T ss_pred EEC-CCcEEEEEeCC-eEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEc-CCccE
Confidence 456 44455555544 5999997754 122222221 1223344433221 244444 49999
Q ss_pred EEEeCCCC--cee-eeecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE---EEecccC-------------
Q 005096 211 KYWQNNMN--NVK-ANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---RSLTGHG------------- 270 (715)
Q Consensus 211 ~iwd~~~~--~~~-~~~~~h~-~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~---~~l~~~~------------- 270 (715)
+.|..-.. +.+ ..+.... +.|+.+.-.. ..-++.+...|++....++ ++.. +.+....
T Consensus 121 ryWesIs~~~~~~ei~~~L~~~E~vt~l~n~e-paGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l~gi~~~~sSl 198 (450)
T 1xks_A 121 RYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQ-GGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGMLSGIGRKVSSL 198 (450)
T ss_dssp EEESCTTCTTCCEEEECC----CCEEEEEEET-TTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC-----------
T ss_pred EEccccCCCCceEEEEecCCCCceEEEEeecC-CceEEEEeccceEEEEEec-CCceEEEEEecCCCccccccccccccc
Confidence 99974322 111 1212223 5566655443 4456666667777777665 3221 1111000
Q ss_pred -------Cc--eEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005096 271 -------WD--VKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 271 -------~~--I~si~~spdg~~L~sgs~Dg~I~iwDl~s~ 302 (715)
.. ..++.+...++.+++.+. +.|.+|++.++
T Consensus 199 ~G~~s~~~~ia~v~~~~~~g~r~v~ilT~-~~lq~W~l~~~ 238 (450)
T 1xks_A 199 FGILSPSSDLTLSSVLWDRERSSFYSLTS-SNISKWELDDS 238 (450)
T ss_dssp -------CCCCEEEEEEETTTTEEEEEES-SEEEEEEECSS
T ss_pred ccccCCCcceEEEEeccCCCcEEEEEEcC-CceEEEEecCC
Confidence 11 122444555666776666 45999999555
No 418
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*
Probab=36.26 E-value=4.4e+02 Score=28.43 Aligned_cols=268 Identities=10% Similarity=0.018 Sum_probs=0.0
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeE
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVR 232 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~ 232 (715)
+.+|+||..-+.+|.|++-+.........+.... .-..+++-.....+++...++.|.-=....+............-.
T Consensus 225 s~~GkYL~~~g~~g~L~~~~~~~~g~~E~F~L~~-~~~qVaL~s~ngkyVsa~~gg~l~An~~~~~~~EtFql~~~~~~~ 303 (493)
T 3llp_A 225 DCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQ-SCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTK 303 (493)
T ss_dssp CTTSCBEEEETTTTEEEECC---CCGGGCEEEEE-CCCEEEEECTTSCEEECC-CCCCEEEESCCSGGGCEEEEECTTTC
T ss_pred eCCCCEEeEECCCCeEEeccCCCCCCceEEEEEe-CCCEEEEEecCCcEEEecCCceEEeeCCCCCCcEEEEEEEeCCCC
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 233 ~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
.++|-..+..+++...+|.|....-..+............-..+.-. +|++|-+-.....+.-.+.........+...+
T Consensus 304 ~vaLRs~~GkYl~~~~~g~v~a~~~~~g~~E~F~i~~~~g~vaLkA~-NGkyVsa~~~G~L~An~~~~g~~E~F~l~l~n 382 (493)
T 3llp_A 304 KCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRAS-NGKFVTSKKNGQLAASVETAGDSELFLMKLIN 382 (493)
T ss_dssp CEEEECTTSCEEEECTTSBEEEEESSCCGGGCBEEEEETTEEEEECT-TSCEEEECTTSBEEEEESSCCGGGCBEEEECS
T ss_pred EEEEEeCCCCEEEEeCCCcEEeccCCCCCcceEEEEeCCCeEEEEeC-CCCEEEEcCCCEEEEecCCCCCCeEEEEEECC
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..+..|. |.+=.+++.+..-.+-.-++...+..+.... ..+.|-. ....+++...||.|....-....-.++
T Consensus 383 rp~l~Lr----g~~G~vg~~~~~~~l~~nr~~~e~F~le~~~---G~~~frt-~nGKYwtv~~dG~l~a~~~~~e~F~~E 454 (493)
T 3llp_A 383 RPIIVFR----GEHGFIGCRKVTGTLDANRSSYDVFQLEFND---GAYNIKD-STGKYWTVGSDSAVTSSGDTPVDFFFE 454 (493)
T ss_dssp CSEECCE----ETTEEEEEC--CCBEEEEESSCCCEEEEEET---TEEEEEC-TTSCEEEECTTSBEEEEESSCCCBEEE
T ss_pred CceEEEe----cccCcEEeccCcchhhcccccceeEEEEECC---CeEEEEe-CCCCEEEEeCCCcEEECCCCcceEEEE
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccc
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
+.....-.|.. +|++|. +..+|.+..=.-.......++
T Consensus 455 ~~~~g~v~ika-----NGkYl~-ad~~G~L~A~~~~i~~~~lwe 492 (493)
T 3llp_A 455 FCDYNKVAIKV-----GGRYLK-GDHAGVLKASAETVDPASLWE 492 (493)
T ss_dssp EETTTEEEEEE-----TTEEEE-ECTTSBEEEEESSCSGGGCEE
T ss_pred EeCCCeEEEEe-----CCEEEE-EcCCCcEEEecCcCCcccccc
No 419
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=35.67 E-value=11 Score=33.27 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=29.7
Q ss_pred cCCCCccCCC-----CCCCCCCCCCCC-CCCCCCCCCcccCCCc
Q 005096 456 RMPGNFPLPE-----GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 493 (715)
Q Consensus 456 ~~~~~~~~~~-----~~~~~g~~~~g~-gr~~gtv~Gy~~~~~l 493 (715)
|..||.+... .....|+.|.|+ +|..+++.||.|+.++
T Consensus 16 CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l 59 (135)
T 155c_A 16 CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGI 59 (135)
T ss_dssp TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHH
T ss_pred HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHH
Confidence 5556666654 456778999998 9999999999998665
No 420
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=32.26 E-value=15 Score=31.85 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=29.2
Q ss_pred ecCCCCccCC-------CCCCCCCCCCCCC-CCCCCCCCCc-ccCCCc
Q 005096 455 GRMPGNFPLP-------EGPTTPGPFAPGL-TRNEGTIPGV-GVAMPL 493 (715)
Q Consensus 455 ~~~~~~~~~~-------~~~~~~g~~~~g~-gr~~gtv~Gy-~~~~~l 493 (715)
.|..||.+.. ....+.|+.|.|+ +|..+++.|| .|+.++
T Consensus 14 ~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l 61 (124)
T 1cxc_A 14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGM 61 (124)
T ss_dssp GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHH
T ss_pred hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHH
Confidence 3556776665 2456789999998 9999999999 776544
No 421
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=31.09 E-value=2.3e+02 Score=23.48 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=11.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
..+.|..||++++.- .+ ..||...
T Consensus 22 ~~l~~~~dGnlvl~~--~~-~~vW~sn 45 (110)
T 3a0c_A 22 YRLIMQGDCNFVLYD--SG-KPVWASN 45 (110)
T ss_dssp EEEEECTTSCEEEEE--TT-EEEEECC
T ss_pred EEEEEcCCCcEEEEE--CC-EEEEECC
Confidence 345555666655542 22 3456544
No 422
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.51 E-value=2.4e+02 Score=23.37 Aligned_cols=91 Identities=9% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
++++.+.-..||.+.+++... ....-......-..+.+..+|++++. ..++.+.+|...+. .........+
T Consensus 19 ~g~~~L~~q~dGnLvl~~~~~--vW~snt~~~~~~~~l~l~~dGNLVl~-~~~~~~~vW~S~t~------~~~~~~~~~l 89 (111)
T 3mez_A 19 YESAAFVMQGDCNLVLYNEAG--GFQSNTHGRGVDCTLRLNNRGQLEIH-SANSNTPVWVYPRS------VNTVRGNYAA 89 (111)
T ss_dssp ETTEEEEECTTSCEEEECSSC--CEECCCTTSCSSCEEEECTTSCEEEE-CSSCSSCSEEESSS------CCCCSSCCEE
T ss_pred cCCEEEEEccCCeEEEECCCC--EEECCcccCCcCEEEEEcCCCcEEEE-eCCCCEEEEEeccc------cCCCCcCEEE
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
.+..||++++.. -.+|...+
T Consensus 90 ~Lq~dGNlvly~-----~~~W~s~t 109 (111)
T 3mez_A 90 TLGPDQHVTIYG-----PAIWSTPA 109 (111)
T ss_dssp EECTTSCEEEEC-----SEEEECCC
T ss_pred EECCCCeEEEec-----cCEEccCC
No 423
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=28.74 E-value=2.4e+02 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=22.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg 330 (715)
.+.+..||++++.. .++. .||...+.. ......+.+..||++++.+
T Consensus 54 ~L~l~~dGnLvL~d-~~~~-~vWss~t~~--------~~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 54 SAVLQSDGNFVVYD-SSGR-SLWASHSTR--------GSGNYILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEEC-TTCC-EEEECCCCC--------CSSCEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEEC-CCcE-EEEEecCCC--------CCCCEEEEEeCCCeEEEEC
Confidence 46667777755543 2232 356544311 1112335556667666653
No 424
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=28.06 E-value=2.5e+02 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=13.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
.+.+..+|++++... ++. .+|...
T Consensus 53 ~l~l~~dGNLvl~~~-~~~-~~W~S~ 76 (109)
T 3dzw_A 53 HLSMQSDGNLVVYSP-RNN-PIWASN 76 (109)
T ss_dssp EEEECTTSCEEEECT-TSC-EEEECC
T ss_pred EEEEeCCCCEEEECC-CCC-EEEECC
Confidence 466777777666532 333 367544
No 425
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=27.18 E-value=2.8e+02 Score=23.33 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=7.2
Q ss_pred EEEEEcCCCCEEE
Q 005096 402 WDLAWHPIGYLLC 414 (715)
Q Consensus 402 ~~l~~spdg~~L~ 414 (715)
..+.+..+|.+++
T Consensus 95 ~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 95 YVLVLQPDRNVVI 107 (119)
T ss_dssp EEEEECTTSCEEE
T ss_pred EEEEEECCCcEEE
Confidence 4455666666444
No 426
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=23.10 E-value=38 Score=30.08 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=30.3
Q ss_pred eecCCCCccCCCCCCCCCCCCCCC-CCCCCCCCCcccCCCc
Q 005096 454 AGRMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPL 493 (715)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~g~-gr~~gtv~Gy~~~~~l 493 (715)
..|..|+.. ......|+.|.++ +|..++..||.|+.++
T Consensus 52 ~~C~~CH~~--~~~~~~gP~L~gv~~r~~~~~~g~~Ys~al 90 (140)
T 3m97_X 52 GKCKACHKL--DGNDGVGPHLNGVVGRTVAGVDGFNYSDPM 90 (140)
T ss_dssp GGTTTTCCS--SSCCSSSCCCTTCTTCBTTCSTTCCCCHHH
T ss_pred HhhhhhcCC--CCCCCcCCCccccccccccccccccccHhh
Confidence 456678776 5566789999999 8999999999998554
No 427
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=22.74 E-value=7.9e+02 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=25.5
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 273 VKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 273 I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
|++|.+...+ ++|+++ ....|...|- +++.+..+-++.
T Consensus 357 iNsv~~d~~dd~~liSs-R~~~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 357 VNSIAYDAKDDSIILSS-RHQGVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EEEEEEETTTTEEEEEE-TTTEEEEEET-TSCEEEEESCST
T ss_pred ecceeEcCCCCEEEEEC-CccEEEEEcC-CCcEEEEECCCC
Confidence 8899988755 455554 4447766674 788877775543
No 428
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=22.65 E-value=3.3e+02 Score=22.56 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCce-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
++.+.+.-..||.+.+|+ .++.+..-....... ..+.+..+|++++.-.... .+|...+.
T Consensus 19 ~g~~~L~~~~dgnlvly~--~~~~vW~sn~~~~~~~~~l~l~~~GnLvl~d~~~~--~vW~S~~~--------------- 79 (115)
T 2dpf_A 19 AGAYTLTIQNKCNLVKYQ--NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNN--DVWGSACW--------------- 79 (115)
T ss_dssp ETTEEEEECTTSCEEEEE--TTEEEEECSCTTSCSSCEEEECTTSCEEEECTTCC--EEEECCCC---------------
T ss_pred CCCEEEEEcCCCcEEEEe--CCEEEEeCCCCCCCCceEEEECCCCcEEEECCCce--EEEEcCCC---------------
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEE
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
+..+.+.+.-..||.+.+|+
T Consensus 80 ----~~~g~~~l~l~~dGnlvl~~ 99 (115)
T 2dpf_A 80 ----GDNGKYALVLQKDGRFVIYG 99 (115)
T ss_dssp ----CSSSCCEEEECTTSCEEEEC
T ss_pred ----CCCCCEEEEEeCCCeEEEEC
No 429
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=21.32 E-value=3.5e+02 Score=22.29 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=21.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
.+.+..+|++++.. .++. .||...+. .......+.+..+|++++
T Consensus 54 ~l~l~~dGNLVl~~-~~~~-~~W~S~t~--------~~~g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 54 RLTLHNNGNLVIYD-QSNR-VIWQTKTN--------GKEDHYVLVLQQDRNVVI 97 (110)
T ss_dssp EEEECTTSCEEEEC-TTCC-EEEECCCC--------CSSSCCEEEECTTSCEEE
T ss_pred EEEEeCCCCEEEEC-CCCc-EEEecCCC--------CCCCCEEEEEeCCccEEE
Confidence 45666677765543 2333 46654321 111223456666666544
No 430
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=20.10 E-value=56 Score=27.15 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=29.3
Q ss_pred ecCCCCccCCCCCCCCCCCCCCC-CCCCCCCCCcccCCCc
Q 005096 455 GRMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPL 493 (715)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~g~-gr~~gtv~Gy~~~~~l 493 (715)
.|..|+.....+....++.|.|+ +|..++..||.|+.++
T Consensus 13 ~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~ 52 (112)
T 3c2c_A 13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESY 52 (112)
T ss_dssp GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHH
T ss_pred hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHH
Confidence 45567766655556678999998 8999999999887543
Done!