BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005098
(714 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIV2|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis
thaliana GN=RPN1A PE=1 SV=2
Length = 891
Score = 1257 bits (3253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/713 (87%), Positives = 679/713 (95%), Gaps = 1/713 (0%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
MELVQ+IVAFHMKHNAE EAVDLLM+VEDLDLL+EHVD TNFKRTC YLTSAA+YLPGPD
Sbjct: 180 MELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPD 239
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
DMLVLDI+YMIY+KFEE+PNALQIALFLDN QYVKQ+FTSC DLL+KKQFCY++ARHGIT
Sbjct: 240 DMLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGIT 299
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASA 180
ELDD+MV DDDDR ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+
Sbjct: 300 FELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASS 359
Query: 181 GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAAS 240
GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD S+ GSSGNWLFKNKEHGK SAAAS
Sbjct: 360 GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD-STTGSSGNWLFKNKEHGKTSAAAS 418
Query: 241 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE 300
LGMI LWDVDSGL+Q+DKYFHS DN +IAGALLGVGIVNCGI+NDCDPALALL +Y+ +E
Sbjct: 419 LGMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKE 478
Query: 301 DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE 360
D+ +RIGAIMGLGISYAG+QNDQIR+KLS ILNDAK+PLDVIAF+++SLG+IYVGSCNEE
Sbjct: 479 DSSVRIGAIMGLGISYAGSQNDQIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEE 538
Query: 361 VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 420
VAQ+IIFALMDRSE+ELG+ LTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM
Sbjct: 539 VAQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 598
Query: 421 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 480
TLLSCAYAGTGNVLKVQ+LL C +H EKG+ +QGPAVLG+AMVAM+EELG++M IRSLE
Sbjct: 599 TLLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLE 658
Query: 481 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540
+LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAM+A+ISLGLIG+GT
Sbjct: 659 RMLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGT 718
Query: 541 NNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGI 600
NNARIAGMLRNLSSYYYKD +LLFCVRIAQGLVHMGKGLLTL+P+HS+RFLLSPTALAGI
Sbjct: 719 NNARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPTALAGI 778
Query: 601 VTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQA 660
VT L ACLDMK +I+GKYHYVLYFLVLAMQPRM+LTVDENLKPLSVPVRVGQAVDVVGQA
Sbjct: 779 VTLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVPVRVGQAVDVVGQA 838
Query: 661 GRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRED 713
GRPKTITGFQTHSTPVLLAAG+RAELAT+KYIPLSPILEGF+ILKENPDYRE+
Sbjct: 839 GRPKTITGFQTHSTPVLLAAGERAELATDKYIPLSPILEGFIILKENPDYREE 891
>sp|Q6XJG8|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis
thaliana GN=RPN1B PE=2 SV=1
Length = 891
Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/713 (84%), Positives = 670/713 (93%), Gaps = 1/713 (0%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
M+LVQ+IV+FHMKHNAE EAVDLLM+VEDLDLL+EHVD TNF+RTC YLTSAAKYLPGPD
Sbjct: 180 MDLVQQIVSFHMKHNAETEAVDLLMDVEDLDLLLEHVDNTNFRRTCNYLTSAAKYLPGPD 239
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
DMLVLDIAYMIY+KF E+PNALQIALFLDNMQYVKQ+FTSC DL++KKQFCY++ARHG+T
Sbjct: 240 DMLVLDIAYMIYIKFAEYPNALQIALFLDNMQYVKQVFTSCTDLVKKKQFCYMIARHGMT 299
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASA 180
ELD +MV +D+D+ ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+
Sbjct: 300 FELDQEMVANDEDKEALQDIVNNSKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASS 359
Query: 181 GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAAS 240
G SVDSARQNL+ATFVNAFVNAGFGQDKLMTVPSD++SG S+GNWLFKNKEHGK SA AS
Sbjct: 360 GPSVDSARQNLSATFVNAFVNAGFGQDKLMTVPSDSTSG-SAGNWLFKNKEHGKTSAVAS 418
Query: 241 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE 300
LGMI LWDV++GL +DKYFHS DN V+AGALLGVGIVNCGI+NDCDPA ALLS Y+ E
Sbjct: 419 LGMIQLWDVETGLGHLDKYFHSNDNPVVAGALLGVGIVNCGIKNDCDPAFALLSGYIDNE 478
Query: 301 DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE 360
D+ +RIGAIMGLGI+YAG+QNDQI+ +LS ILNDA +PLDVIAF+A+SLG+IYVGSCNEE
Sbjct: 479 DSSVRIGAIMGLGIAYAGSQNDQIKIRLSPILNDANAPLDVIAFAALSLGMIYVGSCNEE 538
Query: 361 VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 420
VAQ+IIFALMDRSE+ELGE LTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM
Sbjct: 539 VAQSIIFALMDRSEAELGEALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 598
Query: 421 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 480
TLLSCAYAGTGNVLKVQ+LL C +H KG+ +QGPAV+G+AMVAM+EELGL+M IRSLE
Sbjct: 599 TLLSCAYAGTGNVLKVQDLLAQCGEHLVKGDIHQGPAVIGLAMVAMSEELGLDMEIRSLE 658
Query: 481 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540
+LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAMAA+ISLGLIG+GT
Sbjct: 659 RVLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMAAIISLGLIGAGT 718
Query: 541 NNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGI 600
NNARIAGMLRNLSSYYYKDA+LLFCVRIAQG VHMGKGLLTLNP+HS+R LLSPTALAGI
Sbjct: 719 NNARIAGMLRNLSSYYYKDASLLFCVRIAQGFVHMGKGLLTLNPFHSERLLLSPTALAGI 778
Query: 601 VTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQA 660
VT L ACLDMK++I+GKYHYVLYFLVLAMQPRM+LTVD++LKP+SVPVRVGQAVDVVGQA
Sbjct: 779 VTLLHACLDMKSIILGKYHYVLYFLVLAMQPRMMLTVDQSLKPISVPVRVGQAVDVVGQA 838
Query: 661 GRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRED 713
GRPKTITGFQTHSTPVLLAAG+RAELATEKYIPLSPILEGFVILKENPDYRE+
Sbjct: 839 GRPKTITGFQTHSTPVLLAAGERAELATEKYIPLSPILEGFVILKENPDYREE 891
>sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus
GN=Psmd2 PE=2 SV=1
Length = 908
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/735 (52%), Positives = 537/735 (73%), Gaps = 38/735 (5%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
+ LV+EIV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P+
Sbjct: 185 LTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYSKVCLYLTSCVNYVPEPE 244
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
+ +L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+
Sbjct: 245 NSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVF 304
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-AS 179
LEL +D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R
Sbjct: 305 LELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAA 238
+G+ VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAA
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAA 411
Query: 239 ASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG 298
ASLGMILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 412 ASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVL 471
Query: 299 REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN 358
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN
Sbjct: 472 HNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCN 531
Query: 359 EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYC 418
+V I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R +
Sbjct: 532 GDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFA 591
Query: 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQG 455
+ + CAYAG+GNVLKVQ LL C++H + E A+QG
Sbjct: 592 NTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQG 651
Query: 456 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS 515
AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS
Sbjct: 652 VAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLS 711
Query: 516 RLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 575
+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+
Sbjct: 712 KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771
Query: 576 GKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLL 635
GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+
Sbjct: 772 GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831
Query: 636 TVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLS 695
T DE L+PL V VRVGQAVDVVGQAG+PKTITGFQTH+TPVLLA G+RAELATE+++P++
Sbjct: 832 TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891
Query: 696 PILEGFVILKENPDY 710
PILEGFVIL++NP+Y
Sbjct: 892 PILEGFVILRKNPNY 906
>sp|Q8VDM4|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus
GN=Psmd2 PE=1 SV=1
Length = 908
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/735 (52%), Positives = 537/735 (73%), Gaps = 38/735 (5%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
+ LV+EIV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P+
Sbjct: 185 LTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPE 244
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
+ +L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+
Sbjct: 245 NSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVF 304
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-AS 179
LEL +D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R
Sbjct: 305 LELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAA 238
+G+ VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAA
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAA 411
Query: 239 ASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG 298
ASLGMILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 412 ASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVL 471
Query: 299 REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN 358
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN
Sbjct: 472 HNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCN 531
Query: 359 EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYC 418
+V I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R +
Sbjct: 532 GDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFA 591
Query: 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQG 455
+ + CAYAG+GNVLKVQ LL C++H + E A+QG
Sbjct: 592 NTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQG 651
Query: 456 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS 515
AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS
Sbjct: 652 VAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLS 711
Query: 516 RLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 575
+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+
Sbjct: 712 KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771
Query: 576 GKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLL 635
GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+
Sbjct: 772 GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831
Query: 636 TVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLS 695
T DE L+PL V VRVGQAVDVVGQAG+PKTITGFQTH+TPVLLA G+RAELATE+++P++
Sbjct: 832 TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891
Query: 696 PILEGFVILKENPDY 710
PILEGFVIL++NP+Y
Sbjct: 892 PILEGFVILRKNPNY 906
>sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens
GN=PSMD2 PE=1 SV=3
Length = 908
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/735 (52%), Positives = 537/735 (73%), Gaps = 38/735 (5%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
+ LV+EIV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P+
Sbjct: 185 LTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPE 244
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
+ +L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+
Sbjct: 245 NSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVF 304
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-AS 179
LEL +D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R
Sbjct: 305 LELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAA 238
+G+ VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAA
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAA 411
Query: 239 ASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG 298
ASLGMILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 412 ASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVL 471
Query: 299 REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN 358
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN
Sbjct: 472 HNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCN 531
Query: 359 EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYC 418
+V I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R +
Sbjct: 532 GDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFA 591
Query: 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQG 455
+ + CAYAG+GNVLKVQ LL C++H + E A+QG
Sbjct: 592 NTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQG 651
Query: 456 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS 515
AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS
Sbjct: 652 VAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLS 711
Query: 516 RLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 575
+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+
Sbjct: 712 KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771
Query: 576 GKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLL 635
GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+
Sbjct: 772 GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831
Query: 636 TVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLS 695
T DE L+PL V VRVGQAVDVVGQAG+PKTITGFQTH+TPVLLA G+RAELATE+++P++
Sbjct: 832 TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891
Query: 696 PILEGFVILKENPDY 710
PILEGFVIL++NP+Y
Sbjct: 892 PILEGFVILRKNPNY 906
>sp|Q5R9I6|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii
GN=PSMD2 PE=2 SV=1
Length = 908
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/735 (52%), Positives = 537/735 (73%), Gaps = 38/735 (5%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
+ LV+EI+ ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P+
Sbjct: 185 LTLVKEIIPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPE 244
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
+ +L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+
Sbjct: 245 NSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVF 304
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-AS 179
LEL +D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R
Sbjct: 305 LELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAA 238
+G+ VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAA
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAA 411
Query: 239 ASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG 298
ASLGMILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 412 ASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVL 471
Query: 299 REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN 358
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN
Sbjct: 472 HNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCN 531
Query: 359 EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYC 418
+V I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R +
Sbjct: 532 GDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFA 591
Query: 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQG 455
+ + CAYAG+GNVLKVQ LL C++H + E A+QG
Sbjct: 592 NTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQG 651
Query: 456 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS 515
AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS
Sbjct: 652 VAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLS 711
Query: 516 RLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 575
+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+
Sbjct: 712 KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771
Query: 576 GKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLL 635
GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+
Sbjct: 772 GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831
Query: 636 TVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLS 695
T DE L+PL V VRVGQAVDVVGQAG+PKTITGFQTH+TPVLLA G+RAELATE+++P++
Sbjct: 832 TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891
Query: 696 PILEGFVILKENPDY 710
PILEGFVIL++NP+Y
Sbjct: 892 PILEGFVILRKNPNY 906
>sp|P56701|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus
GN=PSMD2 PE=1 SV=2
Length = 908
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/735 (52%), Positives = 537/735 (73%), Gaps = 38/735 (5%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
+ LV+EIV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P+
Sbjct: 185 LTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPE 244
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
+ +L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+
Sbjct: 245 NSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVF 304
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-AS 179
LEL +D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R
Sbjct: 305 LELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAA 238
+G+ VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAA
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAA 411
Query: 239 ASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG 298
ASLGMILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 412 ASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVL 471
Query: 299 REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN 358
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN
Sbjct: 472 HNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCN 531
Query: 359 EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYC 418
+V I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R +
Sbjct: 532 GDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFA 591
Query: 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQG 455
+ + CAYAG+GNVLKVQ LL C++H + E A+QG
Sbjct: 592 NTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQG 651
Query: 456 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS 515
AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS
Sbjct: 652 VAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLS 711
Query: 516 RLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 575
+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+
Sbjct: 712 KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771
Query: 576 GKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLL 635
GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+
Sbjct: 772 GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831
Query: 636 TVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLS 695
T DE L+PL V VRVGQAVDVVGQAG+PKTITGFQTH+TPVLLA G+RAELATE+++P++
Sbjct: 832 TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891
Query: 696 PILEGFVILKENPDY 710
PILEGFVIL++NP+Y
Sbjct: 892 PILEGFVILRKNPNY 906
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/712 (50%), Positives = 497/712 (69%), Gaps = 28/712 (3%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
++LV EIV F M HNAEPEA DLL+EVE L + +++D N+ R CLYL + Y+PGPD
Sbjct: 195 LKLVDEIVPFQMTHNAEPEACDLLLEVEQLSKIFQYIDENNYSRVCLYLFKCSYYVPGPD 254
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDD---LLRKKQFCYILARH 117
D+ +L + IY+K +++P+AL++A+ + + + + +IF ++ +L+ Q +++AR
Sbjct: 255 DINILKVCVEIYIKMKQYPDALRVAMKISDPELITEIFKLVENNKSILQ--QLGFLVARQ 312
Query: 118 GITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR 177
I VPD+ + ++ DI+NN KLSE ++ LA D+++ EPK PE+I+++HL
Sbjct: 313 KI--------VPDNFNYDSISDIINNSKLSEYFMNLATDLDIREPKLPEEIFQSHL---- 360
Query: 178 ASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSA 237
S A DSAR NLA++FVNAFVNAGFG+DKLMT D W FKN+E G +S
Sbjct: 361 DSTSAIADSARMNLASSFVNAFVNAGFGKDKLMTAEEDT-------KWWFKNRELGILST 413
Query: 238 AASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYV 297
AS GM++LWD+D GL +IDK+ +S + H GAL+ +G++ GIR++ DPAL+LL+E++
Sbjct: 414 VASTGMVVLWDIDGGLTKIDKFLYSQEKHCSNGALMAIGMLTSGIRSEMDPALSLLAEHI 473
Query: 298 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC 357
+ RI AI GLG++YAGTQ + LS L+D K ++ I ++LGLI++GSC
Sbjct: 474 NSSNTGTRISAIFGLGLAYAGTQRQDLMSLLSPCLDDDKEKMEFIGIVGLALGLIFIGSC 533
Query: 358 NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKY 417
+ E++ + L+ R + E R + LGLGLLYLGKQ++ E E K K +Y
Sbjct: 534 DPELSTLFVQTLIQRGTAA-SESHARFLHLGLGLLYLGKQDAAELALETLKAIEGKGGEY 592
Query: 418 CDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIR 477
+T+ +CAYAGTGNVLKVQN+L C+ E + G AVL IA++AM EELG +M +R
Sbjct: 593 ARLTVEACAYAGTGNVLKVQNMLHFCSDGQEN--PHHGLAVLSIALIAMGEELGSDMCLR 650
Query: 478 SLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 537
+HLLQ G +I+RA+PLALGLL SNP++ +MD LS+LSHD D EVA A++SLGLIG
Sbjct: 651 MFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIG 710
Query: 538 SGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTAL 597
+GTNNARI GMLR L+ +Y KD +L F VRIAQGL+H+GKG +T+NPYHSDR L+SP A+
Sbjct: 711 AGTNNARIGGMLRALAVFYGKDVHLFF-VRIAQGLLHLGKGTMTINPYHSDRTLMSPVAV 769
Query: 598 AGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVV 657
G++ L A LD+K ++ + HY+ + +V +M PRML+T+DE+LKPL V VRVGQ+VD+V
Sbjct: 770 GGLLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSVDIV 829
Query: 658 GQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPD 709
G AG+PKTITGFQTH+TPVLL +RAELAT+ YIPL+ ILEG VILK NP+
Sbjct: 830 GLAGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILKPNPN 881
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpn-1 PE=3 SV=2
Length = 902
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/715 (47%), Positives = 485/715 (67%), Gaps = 20/715 (2%)
Query: 7 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLD 66
+V +K NAE +AVDL+ E+E ++ L + +D + R CLY+ S L PD+ L
Sbjct: 195 LVPLFLKSNAEADAVDLMSELEIIEELPKFLDENTYSRVCLYMVSMVNLLTYPDNETFLR 254
Query: 67 IAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCD-DLLRKKQFCYILARHGITLELDD 125
+A+ IY K+ + A+ +A+ L+++ +++ F + D D +KQ +++AR GI LE +
Sbjct: 255 VAHSIYKKYNQHTQAMVLAIRLNDLGLIEKDFEAADEDPALRKQLAFLIARQGIPLEFER 314
Query: 126 DMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVD 185
DDD++ + + ++N KLSE + +L +++ ++EPK+ EDIYK+HL R + + D
Sbjct: 315 S--NDDDEK--IYECLSNQKLSEYFKSLGKELNILEPKTTEDIYKSHLESSRVAGMTNFD 370
Query: 186 SARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMIL 245
SAR NLAA FVNAFVNAGFG DK+M V D S W++K K+ G MS ASLG +L
Sbjct: 371 SARHNLAAGFVNAFVNAGFGSDKMMLVGKDKDS------WVWKTKDEGMMSTVASLGTLL 424
Query: 246 LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSE--YVGREDAC 303
LWDV++GL +DKY + + + AGA L +GI+N +R D +PA+ALL++ + ++
Sbjct: 425 LWDVENGLDHVDKYTYLEEEQIQAGAYLAIGIMNTNVRTDSEPAMALLADPDKLAHKNPL 484
Query: 304 IRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQ 363
IR+ IMGLG++YAG+ +++ L I++D + + V A +A++ G+I+VGS N EV++
Sbjct: 485 IRVATIMGLGLAYAGSCKEELLSFLVNIISDPEESMQVSAMAALACGMIFVGSSNSEVSE 544
Query: 364 AIIFALMDR-SESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 422
AI+ L+D S S L + +R + LGLGLLY G+QE V+ E K + K +
Sbjct: 545 AIVTTLLDEESGSRLNDKWSRFLALGLGLLYFGRQEQVDVILETLKAVEHPMAKPTAVLA 604
Query: 423 LSCAYAGTGNVLKVQNLLGHCAQH------HEKGEAYQGPAVLGIAMVAMAEELGLEMAI 476
CA+AGTG VLK+Q LL C +H + E Q AVLGI ++AM E++G EM +
Sbjct: 605 EICAWAGTGAVLKIQELLHICNEHIEDGEEKKGEELLQAYAVLGIGLIAMGEDVGQEMVL 664
Query: 477 RSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 536
R HL+ YGE NIRRAVPLA+GL+ SNP++ V DTLSR SHD D+EVA+ A+ ++GL+
Sbjct: 665 RHFGHLMHYGEANIRRAVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLL 724
Query: 537 GSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTA 596
G+GTNNAR+A +LR L+SYY++D LF VRIAQGL+HMGKG L+++P+H+DR +LS A
Sbjct: 725 GAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLSNVA 784
Query: 597 LAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDV 656
AG++ L A +D K I K HY+LY++V AM PRML+T+DE+LKPL+V VRVGQAVDV
Sbjct: 785 TAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLVTLDEDLKPLTVNVRVGQAVDV 844
Query: 657 VGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYR 711
VGQAGRPKTITG+QT STPVLL G+RAEL ++YI LS LEG VIL++NPD+
Sbjct: 845 VGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLSSTLEGLVILRKNPDWE 899
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2
Length = 891
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/715 (46%), Positives = 481/715 (67%), Gaps = 22/715 (3%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
MEL IV F + HNAE +A+DLL E+ ++ +V V+ N R CLY+TS LP P+
Sbjct: 187 MELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLLPFPE 246
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
D+ +L A+ IY KF++ AL +A+ LD+M +K+ + D L KKQ Y+LAR I
Sbjct: 247 DVAMLRTAHAIYRKFDQLTQALNVAIRLDDMSLIKEDCEAATDPLLKKQMSYMLARQQIP 306
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASA 180
+++ D+ L D +NN LS+ + L +++ +M+PK PEDI+K HL R
Sbjct: 307 MDMGDE---------ELNDALNNTHLSDHFHYLGKELNLMDPKVPEDIFKTHLEVARTGL 357
Query: 181 GAS-VDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 239
GAS V SA+QNLA TFVNA VNAG+ D+L+ V + +S W++KNKE G +SA A
Sbjct: 358 GASGVYSAKQNLANTFVNALVNAGYSNDRLILVDDEKTS------WIYKNKESGLISATA 411
Query: 240 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR 299
S+G++ LW+VD GL+ +DKY +S++ + AGALLG+G+ N +RN+ DPA+A+LSEY+
Sbjct: 412 SIGLLQLWNVDMGLSLLDKYLYSSEENTKAGALLGIGVTNVAVRNEADPAMAILSEYLET 471
Query: 300 EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE 359
+R AI+GLG++Y+G + + LS I+ D P+ + +A+SLGLI+VG+CN
Sbjct: 472 GSVKLRASAILGLGLAYSGANREDLLDMLSPIVTDTDCPMQLSCLAALSLGLIFVGTCNG 531
Query: 360 EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 419
+VA I+ LM+R ES + R + LGL LL+ GKQ+ +AT E K KI + +
Sbjct: 532 DVASTILQTLMEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAE 591
Query: 420 MTLLSCAYAGTGNVLKVQNLLGHCAQ-----HHEKGEAYQGPAVLGIAMVAMAEELGLEM 474
+ + C+YAGTGNVL +Q LL C++ E Q A LG+A +AM E++G EM
Sbjct: 592 ILVDICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEM 651
Query: 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534
+R +H++ YGE +IR+A+PLALGLL SNP++ + DTLSR SHD D +VA A+ ++G
Sbjct: 652 VLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMG 711
Query: 535 LIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSP 594
L+G+GT+NAR+A +LR L+SYY+K++N LF VRIAQGL+++GKG +TLNPYH++R +L
Sbjct: 712 LVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQ 771
Query: 595 TALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAV 654
TA AG++T + A LD ++ H++LY + LA++PRML+T+ E+ + L V VRVGQAV
Sbjct: 772 TAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAV 831
Query: 655 DVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPD 709
DVVGQAGRPK ITG+ TH+TPVLL +RAELATE Y PL+ LEG VILK+N +
Sbjct: 832 DVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKKNTE 885
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN1 PE=1 SV=3
Length = 993
Score = 309 bits (792), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/452 (37%), Positives = 263/452 (58%), Gaps = 23/452 (5%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
+ L +IV + +KHN E +AVDLL+E+E +D L + VD F+R C Y+ + LP P+
Sbjct: 201 LRLCLDIVPYFLKHNGEEDAVDLLLEIESIDKLPQFVDENTFQRVCQYMVACVPLLPPPE 260
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
D+ L AY IYL E +A+ +A+ L ++ +F + D + KQ YILA +
Sbjct: 261 DVAFLKTAYSIYLSQNELTDAIALAVRLGEEDMIRSVFDATSDPVMHKQLAYILAAQKTS 320
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRAS- 179
E + +QDI+ N KLSE +L LA+++ + PK PEDIYK+HL + ++
Sbjct: 321 FEYE-----------GVQDIIGNGKLSEHFLYLAKELNLTGPKVPEDIYKSHLDNSKSVF 369
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 239
+ A +DSA+QNLA++FVN F+N G+ DKL+ + NW++K K G SA A
Sbjct: 370 SSAGLDSAQQNLASSFVNGFLNLGYCNDKLIV---------DNDNWVYKTKGDGMTSAVA 420
Query: 240 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN-DCDPALALLSEYVG 298
S+G I W++D GL Q+DKY + + V AGALLG+GI G+ + + +PAL LL +YV
Sbjct: 421 SIGSIYQWNLD-GLQQLDKYLYVDEPEVKAGALLGIGISASGVHDGEVEPALLLLQDYVT 479
Query: 299 REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN 358
D I AI+GLGI++AG++ND++ L I P++ A ++++L ++VG+CN
Sbjct: 480 NPDTKISSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLALAHVFVGTCN 539
Query: 359 EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYC 418
++ +I+ ++R+ EL R + L LG+LY+G+ E V+ E +
Sbjct: 540 GDITTSIMDNFLERTAIELKTDWVRFLALALGILYMGQGEQVDDVLETISAIEHPMTSAI 599
Query: 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG 450
++ + SCAY GTG+VL +Q+LL + KG
Sbjct: 600 EVLVGSCAYTGTGDVLLIQDLLHRLTPKNVKG 631
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 190/258 (73%), Gaps = 3/258 (1%)
Query: 457 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 516
AVLGIA++A+ E++G EM++R HL+ YG ++IRR VPLA+G++ +S+P++ V DTL+R
Sbjct: 739 AVLGIALIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTR 798
Query: 517 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 576
SHD D EV+M ++ ++GL G+GTNNAR+A +LR L+SYY ++ + LF R+AQGL+H+G
Sbjct: 799 FSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLG 858
Query: 577 KGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLT 636
KG +T++ ++ D +L+ LA I+TT + ++ K+H + Y L ++P+ +L
Sbjct: 859 KGTMTMDVFN-DAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYMLNAGIRPKFILA 915
Query: 637 VDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSP 696
+++ +P+ V VRVGQAV+ VGQAGRPK ITG+ T STPVLL G+RAEL T++YI +
Sbjct: 916 LNDEGEPIKVNVRVGQAVETVGQAGRPKKITGWITQSTPVLLNHGERAELETDEYISYTS 975
Query: 697 ILEGFVILKENPDYREDH 714
+EG VILK+NPDYRE+
Sbjct: 976 HIEGVVILKKNPDYREEE 993
>sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN1 PE=3 SV=1
Length = 983
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 171/441 (38%), Positives = 269/441 (60%), Gaps = 22/441 (4%)
Query: 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPD 60
++L EIV + MKHN E +AVDLL+E+E ++ L + VD +KR C Y+ + + LP P+
Sbjct: 199 LQLSLEIVPYFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQYMIACVQLLPPPE 258
Query: 61 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGIT 120
D+ L AY IYL + P AL +A+ L N ++ +F + D + +Q YILA +
Sbjct: 259 DISFLQTAYSIYLSELQLPEALSLAIRLGNEDMIRSVFDATSDPIVHQQLAYILAAQRVP 318
Query: 121 LELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRAS- 179
E + LQ+I+ N KLSE +L LA+++ ++ PK PEDIYK+HL ++
Sbjct: 319 FEHPE-----------LQEIIGNTKLSEHFLYLAKELNLLTPKIPEDIYKSHLDSSKSVF 367
Query: 180 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 239
+ A +DSA+QNLAA+FVNAF+N G+ DK++T + NW++K K G SA A
Sbjct: 368 SSAGLDSAQQNLAASFVNAFLNLGYCNDKMIT---------DNDNWVYKTKGDGMTSAVA 418
Query: 240 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR 299
S+G I W++D GL Q+DKY + + V AG LLG+GI + G+ +D +PAL LL EY+
Sbjct: 419 SIGSIYQWNID-GLQQLDKYLYVDEPEVKAGGLLGIGIASAGVHHDVEPALLLLQEYINH 477
Query: 300 EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE 359
D I AI+G+GI++AG++ND++ L ++++ ++ L++ A +A++L ++VG+CN
Sbjct: 478 SDTKISTAAILGIGIAFAGSKNDEVLGLLLPVVSNTENSLELAAIAALALSHVFVGTCNG 537
Query: 360 EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 419
++ A++ ++R+ EL R + L LGLLYLG+ E V+ E + +
Sbjct: 538 DITTAVMDNFLERTPLELKSEWARFLALSLGLLYLGQGEHVDDVLETINAIEHPMTSAIE 597
Query: 420 MTLLSCAYAGTGNVLKVQNLL 440
+ + SCAY TG+VL VQ+LL
Sbjct: 598 VLISSCAYTATGDVLLVQDLL 618
Score = 259 bits (663), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 188/257 (73%), Gaps = 3/257 (1%)
Query: 457 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 516
AV+GIA++ M EE+G EM++R HL+ YG ++IRR VPLA+GL+ +++P++ V DTL+R
Sbjct: 729 AVIGIALITMGEEIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGLVSVADPQMKVFDTLTR 788
Query: 517 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 576
SHD D +V+M ++ ++GL G GTNNAR+A +LR L+SYY ++ + LF R+AQGLVH+G
Sbjct: 789 FSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHLG 848
Query: 577 KGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLT 636
KG +T++ + +D +L+ LA ++T L + ++ K+H + Y L ++P+ ++T
Sbjct: 849 KGTMTMDIF-NDAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYMLNSGVRPKFIIT 905
Query: 637 VDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSP 696
++E + + V VR+GQAV+ VGQAG+PKTITG+ T STPVLL G+RAEL ++YI +
Sbjct: 906 LNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPVLLGHGERAELENDEYISYTN 965
Query: 697 ILEGFVILKENPDYRED 713
+EG VILK+NP+++E+
Sbjct: 966 NIEGVVILKKNPNFQEE 982
>sp|Q8SS65|RPN1_ENCCU 26S proteasome regulatory subunit RPN1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN1 PE=1 SV=1
Length = 795
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 185/706 (26%), Positives = 347/706 (49%), Gaps = 46/706 (6%)
Query: 5 QEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLV 64
+E + F KHNAE EA+D L+EV ++ ++++VD N+ R LYL ++ +
Sbjct: 133 RECIDFLFKHNAEFEAIDFLVEVGGIETVLDYVDTHNYNRIVLYLEDMNSFVD------L 186
Query: 65 LDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELD 124
++ IYLK + + + + + S +D KKQ YILAR + E
Sbjct: 187 EEVILKIYLKMGDHSRYVVGLIRRQKSKEAIEYVRSIEDRDYKKQCLYILARCNLYYE-- 244
Query: 125 DDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASV 184
D +++Y I++N + + Y + ++E+ +P + I K D AS+
Sbjct: 245 ---ASDPEEKY----ILSNGYIKDVYREIGAELEIDKPSKMDAILKGFKYDKDTRQLASI 297
Query: 185 DSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMI 244
A N FV+ G+G+D + S + +S S+G+I
Sbjct: 298 GIA---------NGFVHMGYGRDPIFLPQEGDSRVPLDYEAILGCDVPDLISVFGSIGVI 348
Query: 245 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN-DCDPALALLSEYVGREDAC 303
W+ + + + ++ + ++ +G+ G+RN + PA+ L + +
Sbjct: 349 ESWNSEKVMETLQEHIFADFSY--RKTGSLLGLALSGLRNFEERPAILALLSNNLQSSSS 406
Query: 304 IR-IGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVA 362
I I ++G+ ++GTQ +++R L ++ S +V+ F++ +LG ++ GS +E++
Sbjct: 407 IHVIATLLGIEAMFSGTQAEEVRELLQPLMFSDSS--EVVFFTSFTLGSVFCGSADEDLT 464
Query: 363 QAIIFALMDR-SESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 421
++ +++ ESE R + LGL L+ +++ E+ + K+ +
Sbjct: 465 SLMLQTFVEKGKESE--TQFFRFLMLGLASLFYRRKDVECGIMEIGGALS----KHESIL 518
Query: 422 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 481
+ Y GTG+ ++++L + + + +L A+V+M +E +M R +
Sbjct: 519 IKGFQYVGTGDSNVIESILTD-SFTGDTDALLESLGLLSCALVSMGDETSSQMVGRIVSS 577
Query: 482 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541
L ++R +PL +L SNP+VNV+D L + + ++ ++ ++SLGLIG+GT
Sbjct: 578 SLLLDSSHLRSVLPLCYSILYPSNPQVNVLDMLEKSLNIGETNCIISTIVSLGLIGAGTL 637
Query: 542 NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIV 601
N+RI +L SYYYKD+ +L ++IAQGLV +GKGLL+++P + D+ P G+
Sbjct: 638 NSRITKILDQQYSYYYKDSKVLPVLKIAQGLVSLGKGLLSISPLYFDKTTFMPKNTIGLF 697
Query: 602 TTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAG 661
+T+F LD + H ++FL+ + +T E + +RVG ++ VG G
Sbjct: 698 STVFMLLDSSISPLVSSHAYMFFLLCQACTQKYVTCSEKIN-----IRVGHPINTVGMVG 752
Query: 662 RPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKEN 707
PK ++ QTH++PV+L+ RAE T++ + S +E +ILK+N
Sbjct: 753 EPKKLSSVQTHTSPVVLSEKIRAE--TDENV-CSSYIEDVLILKKN 795
>sp|P32565|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4
Length = 945
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 193/425 (45%), Gaps = 36/425 (8%)
Query: 192 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 251
A + N F++AG +D S ++ WL K + K +A ASLG+I ++
Sbjct: 331 AVSVANGFMHAG---------TTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE 381
Query: 252 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALL----SEYVGREDACI 304
G + Y ++ + G+L G+G++ G D L + S G ED +
Sbjct: 382 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 441
Query: 305 RI-GAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVA 362
+ GA +G+G++ G+ N ++ L +L ND+ + + +A+ +GL +G+ E
Sbjct: 442 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEA---AALGMGLCMLGTGKPEA- 497
Query: 363 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 422
I + S+ +TR + +GL L+ G+QE + +E + +Y
Sbjct: 498 ---IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFT 554
Query: 423 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 482
++ AYAGTGN V+ LL H A + + AV+ + V + + + R ++ L
Sbjct: 555 IALAYAGTGNNSAVKRLL-HVAVSDSNDDVRRA-AVIALGFVLLRDYTTVP---RIVQLL 609
Query: 483 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI---GSG 539
+ ++R ALG+ C + +D L L+ D V AA+I+L +I +
Sbjct: 610 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 669
Query: 540 TNNARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTA 596
N ++A + +N S +++ F +AQG+++ G +T+ ++D L +
Sbjct: 670 KLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKS 729
Query: 597 LAGIV 601
+ G+V
Sbjct: 730 VVGLV 734
>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN2 PE=3 SV=1
Length = 930
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 192/425 (45%), Gaps = 38/425 (8%)
Query: 192 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 251
A + NAF++AG D + ++ WL K + K +A ASLG+I ++
Sbjct: 323 AVSVSNAFMHAGTTDDTFVR---------ANLQWLGKAQNWAKFTATASLGIIHQGNLTG 373
Query: 252 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDAC 303
G ++ Y ++ ++ G+L G+G++ G + D + S +
Sbjct: 374 GKKIMEPYLPGSRASSRYIKGGSLYGLGLIYAGYGKEIIGYLKDQIVENSSNATDDDVDV 433
Query: 304 IRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVGSCNEEV 361
+ GA +G+G++ + + +I L +L + A S A +A+ +GL +GS +E V
Sbjct: 434 LLHGASLGIGLAGMSSNSTEIFEALKEVLYADSANSG----AAAALGIGLTMLGSGDETV 489
Query: 362 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 421
A+ + + S E+ T+ + + L LL G++E + T + +Y +
Sbjct: 490 AENLYTYAQETSHGEI----TKGLAIALALLNYGREELADETIKKMLEHENDSMRYGAVY 545
Query: 422 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 481
++ AYAGT + V+ LL H A + + +V + V + + + R +E
Sbjct: 546 TIALAYAGTSSNEAVKKLL-HVAVSDSNDDVRRA-SVTALGFVLIRDYTTVP---RIVEL 600
Query: 482 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI---GS 538
L + ++R ALG+ C +D L L++D V AA+I+L +I +
Sbjct: 601 LSESHNPHVRCGTAFALGVACAGRGLQAAIDVLEPLTNDPVDFVRQAAMIALSMILIQQT 660
Query: 539 GTNNARIAGM---LRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPT 595
N ++ + LRN+ + +++ F +AQG+++ G +T+ +S+ L+
Sbjct: 661 EKTNVKVRDVNEQLRNVIANKHQEGLAKFGACVAQGIINAGGRNVTIQLENSEMGTLNTK 720
Query: 596 ALAGI 600
++ G+
Sbjct: 721 SVIGL 725
>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1
Length = 965
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 109/469 (23%), Positives = 210/469 (44%), Gaps = 59/469 (12%)
Query: 192 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 251
A TF NAF+N G D + +WL K K +A A+LG+I +
Sbjct: 350 AVTFANAFMNFGTSSDSFFR---------DNLSWLSKANNWSKFTATAALGVIHRGYYNQ 400
Query: 252 GLAQIDKYFH-----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIR 305
+ + Y S+ + GA +G+++ N L E + ED ++
Sbjct: 401 AMNILRPYLPEEDAPSSSTYSEGGAFYAMGLIHA---NHGRGVTEYLREQLKHTEDEIVQ 457
Query: 306 IGAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSA--ISLGLIYVGSCNEEVA 362
G ++G+G++ ++++ + + TIL ND + +A SA IS+GLI +G+ +
Sbjct: 458 YGLLLGIGLTGMASRDETLYESVKTILFND-----NAVAGSAAGISMGLIMLGTA----S 508
Query: 363 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEAT-AEVSKTFNEKIRKYCDMT 421
A I ++ + E + R + +G+ L+ G+Q+ + E++ + +R Y M
Sbjct: 509 SAAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLR-YAGMF 567
Query: 422 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 481
+ AY GT N V+++L H + + + AV + + + L I ++E
Sbjct: 568 ATALAYCGTSNSKIVRDVL-HISVSDVNDDVRRA-AVCALGFICFKDPNAL---ISTVEL 622
Query: 482 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541
L+ ++R +ALG+ C ++ +D LSRL D V A+I+ +I + N
Sbjct: 623 LVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHN 682
Query: 542 ---NARIAGMLRNLS---SYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPT 595
N++++G+ ++ + ++DA +AQG++ G +T+ + L +
Sbjct: 683 DQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTI-ALQTATGSLKLS 741
Query: 596 ALAGIVTTLFACLDMKAVIVGKYHY---VLYFLVLAMQPRMLLTVDENL 641
A+ G+ L +Y Y + +F+ L+ P L+ +D+NL
Sbjct: 742 AIVGLTVFL------------QYWYWFPLTHFMSLSFSPTALIGLDKNL 778
>sp|Q6FIP2|RPN2_CANGA 26S proteasome regulatory subunit RPN2 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN2 PE=3 SV=1
Length = 941
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 30/354 (8%)
Query: 192 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 251
A + N +++AG +D S ++ +WL K + K SA ASLG+I ++
Sbjct: 328 AVSVSNGYMHAG---------TTDNSFIKANLSWLGKAQNWAKFSATASLGVIHKGNLID 378
Query: 252 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDC----DPALALLSEYVGREDACI 304
G + Y S+ + G+L G+G++ G D L S G ED +
Sbjct: 379 GKKVMAPYLPGSRSSSRFIKGGSLYGLGLIYAGFGRDIVDYLKTHLIENSGTTGDEDVDV 438
Query: 305 RI-GAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVA 362
+ GA +G+G++ GT N+++ L +L ND + + AF +GL +G+ +E
Sbjct: 439 LLHGASLGVGLAAMGTANNEVYEALKDVLYNDVATSGEAAAFG---IGLTLLGTGDETAI 495
Query: 363 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 422
+ + S + TR + + L L+ G+QE + + + +Y
Sbjct: 496 NDLFTYAQETSHGNI----TRGLSMALALINYGRQEQADELIDKMLASENSLIRYGGAFS 551
Query: 423 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 482
++ AY GTGN V+ LL H A + + AV + V + + + R ++ L
Sbjct: 552 IALAYVGTGNNKVVKKLL-HLAVSDSNDDVRRA-AVTALGFVLLRDYTTVP---RIVQLL 606
Query: 483 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 536
+ + R ALG+ C +D L ++ D V AA+ISL L+
Sbjct: 607 AESHNAHDRCGAAFALGIACAGKGLQAAIDVLEPMTKDPADFVRQAAMISLSLV 660
>sp|Q18115|PSMD1_CAEEL 26S proteasome non-ATPase regulatory subunit 1 OS=Caenorhabditis
elegans GN=rpn-2 PE=3 SV=4
Length = 965
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/440 (23%), Positives = 189/440 (42%), Gaps = 44/440 (10%)
Query: 224 NWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIA----GALLGVGIVN 279
NW+ K K +A ASLG+I S + ++ Y GA+L G+++
Sbjct: 368 NWVSKATNWNKFNAVASLGLIHHGQESSAMKVLEPYLPKESVEGFGFKEGGAMLAYGLIH 427
Query: 280 CGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSP 338
++ A++ L++++ E+ +R GA +G G++ G+ + K+ +L ++
Sbjct: 428 A--KHGDATAMSTLAQWLKTAENEPVRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEA- 484
Query: 339 LDVIAFSA-ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ 397
V SA I++GLI G N+EV + +D + R I GL G Q
Sbjct: 485 --VSGESAGIAMGLIMAGHLNQEVFNELKQYTVDTQH----DKTQRGIRTGLACAAFGLQ 538
Query: 398 ESVEA-TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP 456
E E + + + + +LS AYAGTG+ V+ LL A + +
Sbjct: 539 GDAEPYIKEAIGAKSNPMLRSTGICMLSMAYAGTGSPDVVRRLLEKVAT--DPNLDVKRY 596
Query: 457 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 516
A +GI V + + + L ++ ++R +ALG+ C + + +
Sbjct: 597 ATIGIGFVLSKDP---STCLSYVAMLTEHFNGHVRYGAAMALGIACAGTGNMEAIALIEP 653
Query: 517 LSHDTDSEVAMAAVISLGLIGSGTNN---ARIAGMLRNLSSY---YYKDANLLFCVRIAQ 570
+ D + V A++SL LI + ++ G + L +D+ + F IAQ
Sbjct: 654 MISDKEGFVRKGALLSLALIMCQQTDYTCPKVNGFRKQLLKKIGEKNEDSLVKFGAIIAQ 713
Query: 571 GLVHMGKGLLTLNPYHSDRFLLSPT--ALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLA 628
GL+ +G + +SD+ P ++ G++ L +H + +F+ LA
Sbjct: 714 GLLDIGGQNAAVTMQNSDK---QPDMGSMVGMMCFLHGWF---------WHSMHFFIALA 761
Query: 629 MQPRMLLTVDENLKPLSVPV 648
+P L+ ++ENLK +PV
Sbjct: 762 AKPSCLVMMNENLK---IPV 778
>sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium
discoideum GN=psmD1 PE=1 SV=1
Length = 975
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 159/349 (45%), Gaps = 33/349 (9%)
Query: 195 FVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLA 254
F NA ++AG +D + S+ WL+K+ K SA +SLG+I + +
Sbjct: 361 FANALMHAGTTRDTFLR---------SNIEWLYKSTHWTKFSAISSLGVINKGHIKESKS 411
Query: 255 QIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIM 310
+ Y + + +G+L +G+++ + + + L E + +A + GA +
Sbjct: 412 LLKTYLPGASVNQTPYSESGSLYALGLIHA---SHGEEIIDYLVEKLHINNAILHHGASL 468
Query: 311 GLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSA--ISLGLIYVGSCNEEVAQAIIF 367
GLG++ T D + L ++L ND D ++ A +++GL+ +GS A+ I
Sbjct: 469 GLGLAAMATGRDDLYEDLKSVLYND-----DAVSGEAAGLAMGLVMLGSG----AKKAIE 519
Query: 368 ALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAY 427
++ + E R + +GL L GK+ES + E + + +Y M ++ AY
Sbjct: 520 EMLAYAHETQHEKTIRSLSMGLAFLMYGKEESADTLIEQMIGDKDPLIRYGGMYAIAFAY 579
Query: 428 AGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE 487
GTG+ ++ LL H A + ++ + AV I V + E +++ L +
Sbjct: 580 CGTGHNDALRKLL-HVAV-SDGTDSVRRAAVTCIGFVLSRQP---EKCPKAIALLAESYN 634
Query: 488 QNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 536
++R ALG+ C + + ++ L L+ D+ V AA IS+ ++
Sbjct: 635 PHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMAMV 683
>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii
GN=PSMD1 PE=2 SV=1
Length = 953
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/474 (21%), Positives = 194/474 (40%), Gaps = 51/474 (10%)
Query: 185 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 241
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 242 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 297
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHAN--HGGDIIDYLLNQLK 466
Query: 298 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 355
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 356 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 415
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 416 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 474
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 535 LIGSGTNNARI--AGMLRNLSSYYYKDAN----LLFCVRIAQGLVHMGKGLLTLNPYHSD 588
LI R L S D + F +AQG++ G +T++
Sbjct: 693 LIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRT 752
Query: 589 RFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLK 642
P+ + +V T F + + +FL LA P ++ ++++LK
Sbjct: 753 GHTHMPSVVGVLVFTQFWF----------WFPLSHFLSLAYTPTCVIGLNKDLK 796
>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus
GN=Psmd1 PE=1 SV=1
Length = 953
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/474 (21%), Positives = 194/474 (40%), Gaps = 51/474 (10%)
Query: 185 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 241
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 242 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 297
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHAN--HGGDIIDYLLNQLK 466
Query: 298 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 355
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 356 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 415
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 416 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 474
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 535 LIGSGTNNARI--AGMLRNLSSYYYKDAN----LLFCVRIAQGLVHMGKGLLTLNPYHSD 588
LI R L S D + F +AQG++ G +T++
Sbjct: 693 LIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRT 752
Query: 589 RFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLK 642
P+ + +V T F + + +FL LA P ++ ++++LK
Sbjct: 753 GHTHMPSVVGVLVFTQFWF----------WFPLSHFLSLAYTPTCVIGLNKDLK 796
>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens
GN=PSMD1 PE=1 SV=2
Length = 953
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/474 (21%), Positives = 194/474 (40%), Gaps = 51/474 (10%)
Query: 185 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 241
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 242 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 297
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHAN--HGGDIIDYLLNQLK 466
Query: 298 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 355
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 356 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 415
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 416 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 474
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 535 LIGSGTNNARI--AGMLRNLSSYYYKDAN----LLFCVRIAQGLVHMGKGLLTLNPYHSD 588
LI R L S D + F +AQG++ G +T++
Sbjct: 693 LIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRT 752
Query: 589 RFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLK 642
P+ + +V T F + + +FL LA P ++ ++++LK
Sbjct: 753 GHTHMPSVVGVLVFTQFWF----------WFPLSHFLSLAYTPTCVIGLNKDLK 796
>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus
GN=Psmd1 PE=2 SV=1
Length = 953
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/474 (20%), Positives = 192/474 (40%), Gaps = 51/474 (10%)
Query: 185 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 241
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 242 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 297
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHAN--HGGDIIDYLLNQLK 466
Query: 298 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 355
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 356 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 415
S N + + ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKNTQAIEDMV----GYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 416 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 474
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGVCCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 535 LIGSGTNNARI--AGMLRNLSSYYYKDAN----LLFCVRIAQGLVHMGKGLLTLNPYHSD 588
LI R L S D + F +AQG++ G +T++
Sbjct: 693 LIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRT 752
Query: 589 RFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLK 642
P+ + +V T F + + +FL LA P ++ ++++LK
Sbjct: 753 GHTHMPSVVGVLVFTQFWF----------WFPLSHFLSLAYTPTCIIGLNKDLK 796
>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus
GN=PSMD1 PE=2 SV=1
Length = 955
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/474 (21%), Positives = 193/474 (40%), Gaps = 51/474 (10%)
Query: 185 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 241
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 242 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 297
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHAN--HGGDIIDYLLNQLK 466
Query: 298 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 355
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 356 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 415
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 416 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 474
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 535 LIGSGTNNARI--AGMLRNLSSYYYKDAN----LLFCVRIAQGLVHMGKGLLTLNPYHSD 588
LI R L S D + F +AQG++ G + ++
Sbjct: 693 LIMIQQTEITCPKVSQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVIISLQSRT 752
Query: 589 RFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLK 642
P+ + +V T F + + +FL LA P ++ ++++LK
Sbjct: 753 GHTHMPSVVGVLVFTQFWF----------WFPLSHFLSLAFTPTCVIGLNKDLK 796
>sp|Q8SSH5|RPN2_ENCCU 26S proteasome regulatory subunit RPN2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN2 PE=1 SV=1
Length = 786
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 152/359 (42%), Gaps = 38/359 (10%)
Query: 197 NAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQI 256
N+ +N G D L ++A G S W K S AS+GMI L++ + +
Sbjct: 281 NSLMNLGTSNDTLYR--NNADIFGQSSEW-------AKFSEVASIGMIHLFNSNP-YEIL 330
Query: 257 DKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC---IRIGAIMGLG 313
Y S + GAL+ +G++ G ++ D L ++ ED + G +GLG
Sbjct: 331 KNYLPSEVSQKEGGALMALGLIKAGTFSEEDTEYLLY--FLDTEDTLTPELAYGVCLGLG 388
Query: 314 ISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRS 373
+ G+ N +I +KL + ++ L + S +G++ + S + E+ + +
Sbjct: 389 LINMGSANREILNKLKELSKVDRTLL--VEASVYGMGMLGLNSWSVELLEDL---RTIAG 443
Query: 374 ESELGEPLTRLIPLGLGLLYLGKQESV-----EATAEVSKTFNE------KIRKYCDMTL 422
E+E E + R + + L+ + +E + + NE I + +
Sbjct: 444 ETEF-ERVKRAVGISFSLVLMFSEEMFYDECNASNGDFKNYINELLYDKDSIMRANGVLS 502
Query: 423 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 482
L A+ GTG + + LL + ++ + + AV+ I +V + ++ + +LE L
Sbjct: 503 LGSAFVGTGRLGVISTLLPYI---NDGDDDVKRAAVIAIGLVCCDDR---DLLVGTLEPL 556
Query: 483 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541
+ +R AV + LGL + L L +DT+S V +A I +G I N
Sbjct: 557 SENHNFFVRAAVAVVLGLFLSGTGDKVCTNILEALMYDTNSLVRQSACIGVGFITMQCN 615
>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila
melanogaster GN=Rpn2 PE=1 SV=1
Length = 1020
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 160/404 (39%), Gaps = 72/404 (17%)
Query: 192 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 251
A NAF+++G D+ + D WL + K++A ASLG+I
Sbjct: 383 ATVIANAFMHSGTTSDQFLRDNLD---------WLARATNWAKLTATASLGVIHRGHEKD 433
Query: 252 GLAQIDKYFHS----TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIG 307
LA + Y + + GAL +G+++ + + LL + ++ +R G
Sbjct: 434 SLALMQSYLPKEAGPSSGYSEGGALYALGLIHAN--HGANIIDYLLQQLKDAQNENVRHG 491
Query: 308 AIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAI 365
+GLG++ GT + +L L +DA + + I++G++ +GS N AQAI
Sbjct: 492 GCLGLGLAGMGTHRQDLYEQLKFNLYQDDAVTG----EAAGIAMGMVMLGSKN---AQAI 544
Query: 366 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 425
++ ++ E + R + +G+ L + E + + + + + M ++
Sbjct: 545 -EDMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYTIAM 603
Query: 426 AYAGTGNVLKVQNLL---------------------------GHC-------AQHHEKGE 451
AY GTG+ ++ LL C A+ +
Sbjct: 604 AYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQCPSVVSLLAESYNPHV 663
Query: 452 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQN-IRRAVPLALGLLCI-----SN 505
Y LGIA GL AI LE ++++ N +R+ +A ++ I S
Sbjct: 664 RYGAAMALGIACAGT----GLREAIALLEPMVKFDPVNFVRQGALIASAMILIQHTDQSC 719
Query: 506 PKVNVMDTLSRLSHDTDSEVAMA---AVISLGLIGSGTNNARIA 546
PK L E MA A+++ G+I +G NA ++
Sbjct: 720 PKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLS 763
>sp|Q9URV2|APC1_SCHPO Anaphase-promoting complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cut4 PE=1 SV=1
Length = 1458
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 269 AGALLGVGIVNCGIRNDCDPALALLSE--YVGREDACIRIGAIMGLGISYAGTQNDQIRH 326
AG L G+G+ N ALA Y+ + IG ++GL SY G+ + ++
Sbjct: 839 AGFLFGLGL------NGHLKALATWHSFIYLTSKHDTTSIGLLLGLASSYLGSMDAKVTK 892
Query: 327 KLSTIL--------NDAK-SPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESEL 377
LS + N+ SPL A + +GL++ SC+ +++ + ++ +ESEL
Sbjct: 893 LLSVHISALLPVGSNELNISPLTQTA-GILGIGLLFHDSCHRRMSEVTMEEILASNESEL 951
Query: 378 GEPLTRLIP-LGLGLLYLGK 396
+L LGL+ LG+
Sbjct: 952 KNEGYKLAAGFSLGLINLGR 971
>sp|Q54NC6|APC1_DICDI Anaphase-promoting complex subunit 1 OS=Dictyostelium discoideum
GN=anapc1 PE=3 SV=1
Length = 2269
Score = 32.7 bits (73), Expect = 9.1, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 289 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSP----LDVIAF 344
A L EY+ +G ++G+ + GT + I LS + P LDV ++
Sbjct: 1377 AFTKLFEYLASGHQLTSVGLLLGISCTKMGTMDMSIAKVLSVHIQSLHPPLSIDLDVPSY 1436
Query: 345 SAIS----LGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR-----LIPLGLGLLYLG 395
I+ +GL+Y + N + + ++ + + ++ +PL R + LGL+ LG
Sbjct: 1437 VQIAALMGIGLLYCQTSNRRMTEVLLMEIGRKPIND--KPLDRDSYSLTAGMALGLVNLG 1494
Query: 396 K 396
K
Sbjct: 1495 K 1495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,152,396
Number of Sequences: 539616
Number of extensions: 11153537
Number of successful extensions: 27634
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 27404
Number of HSP's gapped (non-prelim): 74
length of query: 714
length of database: 191,569,459
effective HSP length: 125
effective length of query: 589
effective length of database: 124,117,459
effective search space: 73105183351
effective search space used: 73105183351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)