Query 005098
Match_columns 714
No_of_seqs 293 out of 840
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 18:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2005 26S proteasome regulat 100.0 9E-186 2E-190 1497.0 50.9 699 1-712 178-878 (878)
2 COG5110 RPN1 26S proteasome re 100.0 1E-157 2E-162 1253.8 49.0 694 2-713 181-880 (881)
3 KOG2062 26S proteasome regulat 100.0 1E-112 2E-117 936.1 37.5 603 2-650 132-761 (929)
4 COG5116 RPN2 26S proteasome re 100.0 2.2E-93 4.9E-98 763.5 30.1 600 2-646 131-754 (926)
5 KOG2062 26S proteasome regulat 100.0 2.1E-51 4.6E-56 452.5 26.0 506 14-610 72-658 (929)
6 COG5116 RPN2 26S proteasome re 100.0 2E-47 4.2E-52 410.4 23.1 508 12-608 70-653 (926)
7 KOG2005 26S proteasome regulat 100.0 2.7E-39 5.8E-44 353.4 20.8 470 3-541 241-744 (878)
8 KOG1858 Anaphase-promoting com 100.0 2.3E-36 5E-41 356.2 20.8 443 228-695 814-1351(1496)
9 COG5110 RPN1 26S proteasome re 100.0 1.3E-33 2.9E-38 303.0 23.3 471 3-542 243-746 (881)
10 KOG1858 Anaphase-promoting com 99.6 4.6E-15 1E-19 177.2 16.8 197 195-398 816-1060(1496)
11 PRK09687 putative lyase; Provi 99.2 1.7E-09 3.6E-14 114.7 24.7 244 253-533 25-277 (280)
12 PRK09687 putative lyase; Provi 99.2 3E-09 6.4E-14 112.9 23.9 242 290-569 25-276 (280)
13 PRK13800 putative oxidoreducta 99.1 2.2E-08 4.8E-13 122.4 28.4 287 231-571 608-895 (897)
14 PRK13800 putative oxidoreducta 98.8 2.9E-07 6.4E-12 112.6 23.8 262 228-534 632-895 (897)
15 TIGR02270 conserved hypothetic 98.2 0.0002 4.2E-09 80.0 22.5 221 272-537 45-266 (410)
16 COG1413 FOG: HEAT repeat [Ener 98.2 0.00042 9.1E-09 75.3 24.6 214 290-534 45-269 (335)
17 TIGR02270 conserved hypothetic 98.2 0.00015 3.3E-09 80.9 20.9 247 242-536 47-294 (410)
18 PF01851 PC_rep: Proteasome/cy 97.8 2.4E-05 5.2E-10 56.3 4.1 35 493-527 1-35 (35)
19 COG1413 FOG: HEAT repeat [Ener 97.8 0.012 2.6E-07 63.9 26.0 255 252-539 44-305 (335)
20 KOG0567 HEAT repeat-containing 97.7 0.0037 8.1E-08 64.5 19.7 63 473-539 218-281 (289)
21 PF01851 PC_rep: Proteasome/cy 97.7 4.3E-05 9.3E-10 55.0 3.5 30 307-336 1-30 (35)
22 PF13646 HEAT_2: HEAT repeats; 97.6 0.00047 1E-08 59.3 9.4 85 478-571 4-88 (88)
23 PF13646 HEAT_2: HEAT repeats; 97.4 0.00044 9.4E-09 59.6 7.3 86 437-534 2-88 (88)
24 KOG0166 Karyopherin (importin) 97.2 0.033 7.1E-07 63.2 20.3 241 291-542 112-397 (514)
25 PLN03200 cellulose synthase-in 96.9 0.29 6.3E-06 64.1 26.8 278 251-540 404-725 (2102)
26 PTZ00429 beta-adaptin; Provisi 96.8 0.52 1.1E-05 56.8 26.6 80 256-337 110-193 (746)
27 KOG2171 Karyopherin (importin) 96.7 1.4 3.1E-05 54.1 28.9 118 251-371 348-477 (1075)
28 PF01602 Adaptin_N: Adaptin N 96.6 0.15 3.3E-06 58.7 20.7 268 256-537 84-368 (526)
29 PF01602 Adaptin_N: Adaptin N 96.6 0.15 3.2E-06 58.8 20.5 284 248-556 39-348 (526)
30 PLN03200 cellulose synthase-in 96.5 0.48 1E-05 62.2 25.1 268 231-511 460-772 (2102)
31 KOG0567 HEAT repeat-containing 95.7 0.48 1E-05 49.4 15.9 236 290-573 38-278 (289)
32 TIGR02917 PEP_TPR_lipo putativ 95.7 7.1 0.00015 46.9 39.1 251 243-519 611-865 (899)
33 COG5064 SRP1 Karyopherin (impo 95.6 0.5 1.1E-05 50.7 16.2 239 294-542 120-402 (526)
34 PTZ00429 beta-adaptin; Provisi 95.6 7.9 0.00017 46.9 33.9 85 231-315 119-206 (746)
35 TIGR02917 PEP_TPR_lipo putativ 95.5 7.8 0.00017 46.6 42.8 303 244-577 578-886 (899)
36 PF13513 HEAT_EZ: HEAT-like re 95.5 0.028 6E-07 44.2 5.0 48 488-535 1-54 (55)
37 COG5240 SEC21 Vesicle coat com 95.4 1 2.2E-05 51.4 18.4 275 272-558 208-584 (898)
38 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.044 9.5E-07 48.9 6.5 78 453-530 2-89 (97)
39 PRK11788 tetratricopeptide rep 95.3 5.8 0.00013 43.4 26.8 301 244-561 46-354 (389)
40 KOG1824 TATA-binding protein-i 94.9 0.47 1E-05 56.9 14.4 265 289-610 819-1100(1233)
41 KOG2171 Karyopherin (importin) 94.6 5.3 0.00011 49.3 22.9 86 452-538 324-418 (1075)
42 smart00638 LPD_N Lipoprotein N 94.3 3.2 6.9E-05 48.7 20.2 205 354-570 320-540 (574)
43 KOG1078 Vesicle coat complex C 93.4 4.2 9.2E-05 48.2 18.0 272 253-537 247-531 (865)
44 PF01347 Vitellogenin_N: Lipop 92.9 1.5 3.3E-05 51.8 14.4 210 147-387 346-581 (618)
45 smart00638 LPD_N Lipoprotein N 92.5 3.5 7.6E-05 48.4 16.6 197 146-372 309-526 (574)
46 KOG0166 Karyopherin (importin) 91.9 28 0.00062 40.1 22.5 245 258-513 116-402 (514)
47 KOG0915 Uncharacterized conser 91.9 30 0.00065 44.3 23.3 135 233-372 973-1138(1702)
48 cd00020 ARM Armadillo/beta-cat 91.6 1.5 3.2E-05 39.0 9.6 84 452-535 22-117 (120)
49 COG5064 SRP1 Karyopherin (impo 91.6 16 0.00035 39.7 18.2 254 262-542 126-428 (526)
50 KOG4224 Armadillo repeat prote 91.3 7.2 0.00016 42.6 15.4 87 265-353 184-279 (550)
51 PRK10049 pgaA outer membrane p 91.1 44 0.00096 40.8 27.2 318 242-580 92-443 (765)
52 KOG2023 Nuclear transport rece 91.1 11 0.00023 44.3 17.4 123 456-580 590-737 (885)
53 KOG2259 Uncharacterized conser 90.8 6.2 0.00014 46.1 15.2 98 261-363 208-317 (823)
54 COG5096 Vesicle coat complex, 90.6 0.82 1.8E-05 54.6 8.4 100 435-539 93-196 (757)
55 KOG0213 Splicing factor 3b, su 89.9 19 0.00042 42.8 18.2 135 438-579 929-1072(1172)
56 PRK11788 tetratricopeptide rep 89.8 34 0.00074 37.3 27.6 239 271-524 39-283 (389)
57 PF01347 Vitellogenin_N: Lipop 89.4 3.1 6.8E-05 49.2 12.3 205 354-569 356-583 (618)
58 PRK12370 invasion protein regu 89.1 47 0.001 38.9 21.6 208 323-554 322-534 (553)
59 PF05004 IFRD: Interferon-rela 88.9 27 0.00058 37.8 17.9 51 452-502 201-256 (309)
60 KOG1059 Vesicle coat complex A 88.2 65 0.0014 38.5 21.2 268 264-555 86-379 (877)
61 PF02985 HEAT: HEAT repeat; I 88.1 0.78 1.7E-05 31.7 3.6 26 511-536 2-27 (31)
62 PF12348 CLASP_N: CLASP N term 87.3 7.7 0.00017 39.4 12.1 64 476-539 133-207 (228)
63 PRK15174 Vi polysaccharide exp 86.2 84 0.0018 37.7 27.6 298 230-555 73-381 (656)
64 KOG1824 TATA-binding protein-i 85.4 13 0.00029 45.2 13.8 199 255-469 822-1039(1233)
65 PRK15174 Vi polysaccharide exp 85.4 92 0.002 37.4 27.4 276 243-542 52-333 (656)
66 cd00020 ARM Armadillo/beta-cat 84.9 8.7 0.00019 33.9 9.9 66 475-541 9-81 (120)
67 KOG0915 Uncharacterized conser 84.4 40 0.00086 43.3 17.7 237 289-538 819-1113(1702)
68 PF12717 Cnd1: non-SMC mitotic 84.0 8.6 0.00019 38.0 10.1 88 452-539 3-93 (178)
69 PRK12370 invasion protein regu 83.1 1E+02 0.0022 36.1 21.3 253 249-525 277-540 (553)
70 PF03130 HEAT_PBS: PBS lyase H 82.5 1.4 3E-05 29.6 2.6 27 490-520 1-27 (27)
71 PF13513 HEAT_EZ: HEAT-like re 81.8 2.4 5.1E-05 33.1 4.2 49 452-500 2-54 (55)
72 smart00299 CLH Clathrin heavy 81.5 11 0.00024 35.1 9.5 107 4-111 10-132 (140)
73 cd05804 StaR_like StaR_like; a 80.7 86 0.0019 33.7 23.2 164 236-408 46-213 (355)
74 COG3118 Thioredoxin domain-con 79.7 93 0.002 33.4 17.5 183 353-555 113-302 (304)
75 KOG0211 Protein phosphatase 2A 78.6 22 0.00048 43.1 12.6 103 433-538 556-664 (759)
76 COG5096 Vesicle coat complex, 78.5 3.5 7.6E-05 49.4 5.9 60 478-537 96-155 (757)
77 PF05004 IFRD: Interferon-rela 76.7 1.2E+02 0.0025 32.9 17.6 106 262-367 54-174 (309)
78 KOG1240 Protein kinase contain 76.6 2.3E+02 0.0049 36.2 23.8 125 401-530 580-717 (1431)
79 COG5181 HSH155 U2 snRNP splice 75.3 91 0.002 36.7 15.4 136 438-580 734-878 (975)
80 PF04826 Arm_2: Armadillo-like 74.7 50 0.0011 34.7 12.8 70 473-542 12-87 (254)
81 smart00567 EZ_HEAT E-Z type HE 74.3 4.5 9.7E-05 27.5 3.3 29 489-521 2-30 (30)
82 KOG1517 Guanine nucleotide bin 72.3 8.9 0.00019 47.0 7.0 87 452-539 572-672 (1387)
83 PF02985 HEAT: HEAT repeat; I 71.5 6.3 0.00014 27.1 3.5 24 478-501 4-27 (31)
84 PF12755 Vac14_Fab1_bd: Vacuol 70.5 14 0.00031 32.8 6.5 79 490-568 2-90 (97)
85 KOG1060 Vesicle coat complex A 69.5 2.7E+02 0.0058 33.9 21.4 92 256-352 113-207 (968)
86 PF04053 Coatomer_WDAD: Coatom 68.9 36 0.00078 38.8 10.8 106 4-115 298-416 (443)
87 PF12717 Cnd1: non-SMC mitotic 68.8 62 0.0013 31.8 11.3 90 264-355 1-93 (178)
88 KOG2025 Chromosome condensatio 67.2 38 0.00083 40.2 10.5 48 484-531 136-186 (892)
89 PF04053 Coatomer_WDAD: Coatom 66.8 38 0.00083 38.6 10.5 102 6-117 323-440 (443)
90 COG5181 HSH155 U2 snRNP splice 66.3 62 0.0013 38.0 11.7 181 258-446 695-891 (975)
91 KOG1061 Vesicle coat complex A 61.1 2.3E+02 0.0049 34.2 15.4 137 262-408 97-245 (734)
92 KOG4224 Armadillo repeat prote 59.0 66 0.0014 35.5 9.8 63 479-541 213-283 (550)
93 PF08713 DNA_alkylation: DNA a 58.4 39 0.00084 33.8 7.9 75 475-551 121-196 (213)
94 PF04762 IKI3: IKI3 family; I 58.2 1.1E+02 0.0024 38.4 13.1 51 2-53 695-760 (928)
95 KOG0985 Vesicle coat protein c 57.5 48 0.001 41.0 9.2 111 2-112 968-1112(1666)
96 KOG0212 Uncharacterized conser 57.1 77 0.0017 36.9 10.3 134 427-566 31-187 (675)
97 PF09384 UTP15_C: UTP15 C term 56.8 63 0.0014 31.0 8.6 67 8-74 25-109 (148)
98 KOG1943 Beta-tubulin folding c 56.3 5.2E+02 0.011 32.7 18.1 64 475-538 541-611 (1133)
99 cd06561 AlkD_like A new struct 53.2 2.3E+02 0.005 27.8 12.5 76 477-553 108-184 (197)
100 PRK10049 pgaA outer membrane p 53.1 5.1E+02 0.011 31.7 26.4 168 387-562 278-463 (765)
101 PF11768 DUF3312: Protein of u 52.2 1.1E+02 0.0025 35.5 10.9 94 6-100 413-532 (545)
102 KOG1061 Vesicle coat complex A 51.4 47 0.001 39.8 7.8 103 434-541 86-192 (734)
103 KOG2023 Nuclear transport rece 51.2 28 0.0006 41.0 5.8 120 231-352 368-503 (885)
104 PF04840 Vps16_C: Vps16, C-ter 51.1 2E+02 0.0043 31.4 12.3 95 4-102 180-302 (319)
105 KOG2025 Chromosome condensatio 49.0 5.7E+02 0.012 31.0 16.6 99 360-462 81-189 (892)
106 PF10508 Proteasom_PSMB: Prote 47.3 5.1E+02 0.011 30.0 26.1 83 481-563 297-394 (503)
107 KOG0213 Splicing factor 3b, su 46.6 71 0.0015 38.3 8.1 177 262-446 894-1086(1172)
108 PF10363 DUF2435: Protein of u 45.7 1.5E+02 0.0032 26.1 8.4 80 254-334 6-88 (92)
109 KOG1062 Vesicle coat complex A 45.6 6.6E+02 0.014 30.8 19.5 254 312-575 92-412 (866)
110 TIGR03302 OM_YfiO outer membra 45.1 3.3E+02 0.0072 27.2 15.2 75 243-318 43-119 (235)
111 KOG1943 Beta-tubulin folding c 44.6 7.7E+02 0.017 31.3 16.8 237 258-501 348-609 (1133)
112 KOG3617 WD40 and TPR repeat-co 44.6 87 0.0019 38.1 8.5 90 2-91 1081-1174(1416)
113 KOG4653 Uncharacterized conser 44.3 7.1E+02 0.015 30.8 16.8 73 258-331 734-810 (982)
114 PF04826 Arm_2: Armadillo-like 42.8 3E+02 0.0064 29.0 11.6 38 400-437 14-51 (254)
115 TIGR02521 type_IV_pilW type IV 41.8 3.2E+02 0.007 26.1 17.0 117 245-368 43-160 (234)
116 KOG1240 Protein kinase contain 41.4 1.5E+02 0.0032 37.7 10.0 129 256-390 583-720 (1431)
117 TIGR02521 type_IV_pilW type IV 40.7 3.3E+02 0.0072 26.0 18.0 12 423-434 141-152 (234)
118 COG5098 Chromosome condensatio 39.9 50 0.0011 39.2 5.6 90 451-540 910-1003(1128)
119 PLN03077 Protein ECB2; Provisi 39.6 8.2E+02 0.018 30.2 36.1 26 4-29 124-149 (857)
120 PF12719 Cnd3: Nuclear condens 38.8 3.2E+02 0.0069 29.2 11.5 86 452-537 42-142 (298)
121 PLN03081 pentatricopeptide (PP 38.1 7.8E+02 0.017 29.5 33.0 121 348-482 365-488 (697)
122 PF12460 MMS19_C: RNAPII trans 38.0 5E+02 0.011 29.2 13.4 88 452-542 250-356 (415)
123 PF11698 V-ATPase_H_C: V-ATPas 37.6 90 0.002 29.0 6.0 29 510-538 87-115 (119)
124 PF10363 DUF2435: Protein of u 37.6 1.6E+02 0.0034 26.0 7.3 36 507-542 41-76 (92)
125 KOG0211 Protein phosphatase 2A 37.6 1.3E+02 0.0028 36.7 8.9 102 473-575 557-664 (759)
126 PF12719 Cnd3: Nuclear condens 37.4 4.3E+02 0.0094 28.1 12.3 113 255-369 31-161 (298)
127 PF08625 Utp13: Utp13 specific 36.8 32 0.00069 32.9 3.0 31 71-101 6-36 (141)
128 KOG1060 Vesicle coat complex A 35.6 9.3E+02 0.02 29.7 19.4 86 232-317 123-209 (968)
129 PF12348 CLASP_N: CLASP N term 34.2 4.5E+02 0.0097 26.3 11.3 91 484-574 104-205 (228)
130 PRK09782 bacteriophage N4 rece 33.6 1.1E+03 0.024 30.0 22.9 224 268-518 476-704 (987)
131 PRK09782 bacteriophage N4 rece 33.3 1.1E+03 0.024 29.9 20.5 212 345-580 479-693 (987)
132 KOG1077 Vesicle coat complex A 33.0 9.7E+02 0.021 29.1 22.9 79 475-554 330-415 (938)
133 KOG1820 Microtubule-associated 32.7 6E+02 0.013 31.5 13.4 77 477-553 374-458 (815)
134 PF05918 API5: Apoptosis inhib 31.2 4.4E+02 0.0096 31.1 11.5 47 473-519 58-106 (556)
135 PF13429 TPR_15: Tetratricopep 30.9 1.8E+02 0.004 30.2 8.0 14 246-259 21-34 (280)
136 PF00514 Arm: Armadillo/beta-c 30.7 72 0.0016 23.0 3.5 24 511-534 14-37 (41)
137 KOG1517 Guanine nucleotide bin 28.4 1.7E+02 0.0036 36.8 7.6 102 438-540 599-734 (1387)
138 PF06371 Drf_GBD: Diaphanous G 27.9 2.8E+02 0.006 26.9 8.2 98 16-115 83-183 (187)
139 KOG2280 Vacuolar assembly/sort 26.8 1.1E+02 0.0023 36.9 5.6 45 71-115 542-586 (829)
140 PF09976 TPR_21: Tetratricopep 25.9 5.4E+02 0.012 23.9 13.3 89 341-435 46-136 (145)
141 smart00299 CLH Clathrin heavy 25.8 1.5E+02 0.0033 27.4 5.7 35 5-39 86-121 (140)
142 PF05918 API5: Apoptosis inhib 25.3 1.4E+02 0.0031 35.0 6.2 67 433-502 58-124 (556)
143 TIGR02795 tol_pal_ybgF tol-pal 25.1 3.2E+02 0.007 23.4 7.5 83 473-555 19-105 (119)
144 KOG0985 Vesicle coat protein c 24.7 1.9E+02 0.0041 36.2 7.1 73 42-123 1506-1584(1666)
145 KOG2114 Vacuolar assembly/sort 24.1 1.1E+03 0.023 29.3 13.0 80 8-102 375-458 (933)
146 PRK14574 hmsH outer membrane p 23.8 1.5E+03 0.032 28.2 16.3 187 350-551 41-228 (822)
147 TIGR00540 hemY_coli hemY prote 23.7 1E+03 0.022 26.4 22.7 282 239-542 88-385 (409)
148 KOG0291 WD40-repeat-containing 23.6 1.5E+02 0.0033 35.6 6.0 33 69-101 728-760 (893)
149 cd05804 StaR_like StaR_like; a 23.2 9.1E+02 0.02 25.6 25.0 166 265-443 41-212 (355)
150 KOG1822 Uncharacterized conser 23.2 2E+03 0.044 29.7 17.0 69 398-468 915-990 (2067)
151 KOG1125 TPR repeat-containing 21.7 1.4E+03 0.03 27.1 16.0 240 240-518 292-552 (579)
152 PF14668 RICTOR_V: Rapamycin-i 21.2 2.5E+02 0.0054 23.7 5.4 14 455-468 5-18 (73)
153 KOG0414 Chromosome condensatio 21.2 1.8E+02 0.004 36.8 6.2 88 451-538 937-1027(1251)
154 PF10579 Rapsyn_N: Rapsyn N-te 21.1 1.8E+02 0.0038 25.2 4.4 53 36-88 16-69 (80)
155 KOG1241 Karyopherin (importin) 20.4 1.6E+03 0.035 27.5 20.4 69 474-542 320-397 (859)
156 KOG2032 Uncharacterized conser 20.3 5E+02 0.011 30.0 9.0 86 452-537 273-370 (533)
157 KOG1242 Protein containing ada 20.2 1.5E+03 0.032 26.9 22.3 92 484-580 382-488 (569)
No 1
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-186 Score=1497.01 Aligned_cols=699 Identities=64% Similarity=1.010 Sum_probs=678.6
Q ss_pred ChhHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcccChHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHHH
Q 005098 1 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPN 80 (714)
Q Consensus 1 ~~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~~ 80 (714)
++|+.+||||+||||+|.||||+++|+++||++.+|||++||+|+|+|+.+|++|+|+|+|..++++++.||+|+++|++
T Consensus 178 ~~l~~~iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~ 257 (878)
T KOG2005|consen 178 LDLVQEIVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR 257 (878)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhhcchHHHHHHHHHHHhhhcccccccCCCCCCcchHHHHHHHHcCcCcchhHHHHHHHhhcc
Q 005098 81 ALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVM 160 (714)
Q Consensus 81 al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~~~ 160 (714)
|+++||+++|.+.++++|.+|+|+.++||+||+||||++++++.+ ++.+++|++|.+++++|+.+++|++++
T Consensus 258 al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~--------~e~l~di~sN~~Lse~f~~LarELeim 329 (878)
T KOG2005|consen 258 ALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE--------DEELQDILSNGKLSEHFLYLARELEIM 329 (878)
T ss_pred HHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCc--------CHHHHHHHccccHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999998742 378999999999999999999999999
Q ss_pred CCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccCCCcccccCCCCCCCCCcccccccccchhHHHHHHH
Q 005098 161 EPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAAS 240 (714)
Q Consensus 161 ~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~a~as 240 (714)
+||+||+|||+|++++|...+..+||||||+|++|+|||||+||+.||+|.+..+ +...|+||||++++.+|++|
T Consensus 330 epk~pedIyK~hl~~~r~~s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~-----s~~~w~yknke~g~~sa~aS 404 (878)
T KOG2005|consen 330 EPKVPEDIYKSHLEDSRGGSGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEG-----SRVNWLYKNKEHGMTSAAAS 404 (878)
T ss_pred CCCChHHHHHHHHhccccccccCccHHHHHHHHHHHHHHhhcccCCCceeccCcc-----ccCcceeeccccCchHhhhh
Confidence 9999999999999999965578899999999999999999999999999998653 35679999999999999999
Q ss_pred hhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Q 005098 241 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 320 (714)
Q Consensus 241 lGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 320 (714)
+|+|..||+|.|++++++|++++++|+++|||+|+|++++|+++|+||++++|++|+++++..+|+||+||||++|+||+
T Consensus 405 ~G~I~~Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq 484 (878)
T KOG2005|consen 405 LGMIQLWNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ 484 (878)
T ss_pred cchhheecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH
Q 005098 321 NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 321 ~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~ 400 (714)
++++...|.|++.|++.++|+.++|+|+||+||+||||++++..+++.+|++.++++.+.|.||+++|+|++|+|++|++
T Consensus 485 ~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~ 564 (878)
T KOG2005|consen 485 REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESV 564 (878)
T ss_pred hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchH
Confidence 99999999999999888899999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHH--HHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHH
Q 005098 401 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV--QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 478 (714)
Q Consensus 401 ~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i--~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~ 478 (714)
+++.+.++.+++|+.++..+++.+|||+||||+.+| |.++++|.++..+.+..+..|++|+|+|+||+++|.+|+.|+
T Consensus 565 d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~ 644 (878)
T KOG2005|consen 565 DAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRH 644 (878)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999 889999999877544556799999999999999999999999
Q ss_pred HHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhcc
Q 005098 479 LEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYK 558 (714)
Q Consensus 479 l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~ 558 (714)
|+|+++|++|++|+++|+|+|++|++||+.+++|+|++++||.|.+|..+||+|||+|||||||+|++++||||++||+|
T Consensus 645 f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyK 724 (878)
T KOG2005|consen 645 FGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYK 724 (878)
T ss_pred HHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhccccEeEeec
Q 005098 559 DANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVD 638 (714)
Q Consensus 559 d~~~~~~~~lA~Gll~~G~g~~tls~~~sd~~~~~~~a~agLl~~l~~~~~~~~~~~~~~h~l~~~l~lA~~Pr~li~~d 638 (714)
|++..|.+|+||||+|+|||++|++|+|+||++++|+|+|||++++++++|++.++..++||++||+++||+|||++|+|
T Consensus 725 d~~~Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~ 804 (878)
T KOG2005|consen 725 DSKALFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVD 804 (878)
T ss_pred cchhHHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999555568999999999999999999999
Q ss_pred CCCCcceeeEEecceeeccccCCCcceeccceeeecceeccCCCeeeeccCCccccCCcccceEEeecCCCCCC
Q 005098 639 ENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRE 712 (714)
Q Consensus 639 ~~l~~~~v~vrvg~~vd~vg~~g~p~~itg~qt~~tPvll~~~erael~~~~~~~~~~~~e~~vi~~~~~~~~~ 712 (714)
++++|++|+|||||||||||||||||||||||||+|||||.+|||||+++++|+|++|.|||||||||||||.+
T Consensus 805 e~~~pl~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElatd~y~p~t~~lEg~vILkkNp~y~~ 878 (878)
T KOG2005|consen 805 EELEPLPVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELATDEYLPLTSHLEGVVILKKNPDYIE 878 (878)
T ss_pred ccCccccceeeccchhhhhhccCCCceecceeccCcceecccchhhhhccccccccccccceEEEEecCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999964
No 2
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-157 Score=1253.85 Aligned_cols=694 Identities=40% Similarity=0.690 Sum_probs=670.2
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcccChHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHHHH
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNA 81 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~~a 81 (714)
++..+||||+++||+|.||||+++|++.||++.+|||.+||.|||+|+.+|++.+++|++..++++++.||+|++++.+|
T Consensus 181 ~l~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~a 260 (881)
T COG5110 181 DLGLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRA 260 (881)
T ss_pred HHHHHHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHhhcchHHHHHHHHHHHhhhcccccccCCCCCCcchHHHHHHHHcCcCcchhHHHHHHHhhccC
Q 005098 82 LQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVME 161 (714)
Q Consensus 82 l~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~~~~ 161 (714)
+..||++++.+.+++.+.+.+||.++||++|+|||||+.++..| ++++.||+|.+++++|++++||+|+++
T Consensus 261 v~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~d---------ee~~dil~Ng~lsdhf~ylgkELnl~~ 331 (881)
T COG5110 261 VVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD---------EEEKDILSNGYLSDHFRYLGKELNLDK 331 (881)
T ss_pred HHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCC---------HHHHHHhcCCcHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998644 689999999999999999999999999
Q ss_pred CCChhHHHHhhhccCCCCC-CcchhhHHHhHHHHHHHHHHhhccCCCcccccCCCCCCCCCcccccccccchhHHHHHHH
Q 005098 162 PKSPEDIYKAHLLDGRASA-GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAAS 240 (714)
Q Consensus 162 ~k~~~~iyk~~l~~~~~~~-~~~~dsa~~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~a~as 240 (714)
||.||||||+|++..|.+. ...++||+||+|++|+|+++|+|..+|+++-. |++|+||+|..++.+|++|
T Consensus 332 PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fvn~~inlgy~nD~li~~---------dd~wiyk~k~~gliSa~aS 402 (881)
T COG5110 332 PKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFVNDPINLGYENDSLIPL---------DDEWIYKCKVPGLISAFAS 402 (881)
T ss_pred CCChHHHHHhhhhccccchhhcccchhhhHHHHhhhccccccCccCCeeeec---------chhhhhcCCCCChhheeec
Confidence 9999999999998666542 57799999999999999999999999999876 4459999999999999999
Q ss_pred hhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Q 005098 241 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 320 (714)
Q Consensus 241 lGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 320 (714)
+|+|..||.|.+++.+++|++.+.++.|+||++|+|+...++++|.+|++++|++||++++...+.+|+||||++|.|++
T Consensus 403 IG~i~~WN~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~ 482 (881)
T COG5110 403 IGVIESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQ 482 (881)
T ss_pred chhhhhhhhHhhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH
Q 005098 321 NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 321 ~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~ 400 (714)
++++.++|.|++.+++.++|+.++|+++||.||+||||+++...+++.++|+...+.+..|.||+++|+|++|+|+++++
T Consensus 483 ~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~ 562 (881)
T COG5110 483 AEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQV 562 (881)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchh
Confidence 99999999999998888899999999999999999999999999999999987656688899999999999999999999
Q ss_pred HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCC-----ccccchhHHHHHHhhcccchhhhhH
Q 005098 401 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG-----EAYQGPAVLGIAMVAMAEELGLEMA 475 (714)
Q Consensus 401 ~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~-----~~vrr~avl~lalI~~~~~~~~~~~ 475 (714)
+.+.+++.+++.++.|...+++-+|+|+||||+..||.|||.+.+...|+ ..++..+++|+|+|+||+++|+||+
T Consensus 563 d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMv 642 (881)
T COG5110 563 DDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMV 642 (881)
T ss_pred HHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHH
Confidence 99999999999999999999999999999999999999999998766542 2467899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhh
Q 005098 476 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 555 (714)
Q Consensus 476 ~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~ 555 (714)
.|+|+|++||+++|+|+.+|+|+|++++++|+.+++|+|++++||.|.+|..++|+|||+++|||+|+|++++|||+++|
T Consensus 643 lRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaSY 722 (881)
T COG5110 643 LRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLASY 722 (881)
T ss_pred HHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhccccEeE
Q 005098 556 YYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLL 635 (714)
Q Consensus 556 ~~~d~~~~~~~~lA~Gll~~G~g~~tls~~~sd~~~~~~~a~agLl~~l~~~~~~~~~~~~~~h~l~~~l~lA~~Pr~li 635 (714)
|+|+.++.|.+|+|||++++|||++|++|+|.|+..+.|++.|||+++.+..+|++.+.+..+|+++||+.+++.||+++
T Consensus 723 Y~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~agl~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~v 802 (881)
T COG5110 723 YYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAGLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYV 802 (881)
T ss_pred HhhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHHHHHHHHHHHccccchhhhhHHHHHHHHhccCcceEE
Confidence 99999999999999999999999999999999999999999999999999999998888878999999999999999999
Q ss_pred eecCCCCcceeeEEecceeeccccCCCcceeccceeeecceeccCCCeeeeccCCccccCCcccceEEeecCCCCCCC
Q 005098 636 TVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRED 713 (714)
Q Consensus 636 ~~d~~l~~~~v~vrvg~~vd~vg~~g~p~~itg~qt~~tPvll~~~erael~~~~~~~~~~~~e~~vi~~~~~~~~~~ 713 (714)
|++|+++|++|+|||||||+||||||+||+|||||||+|||+|+++||||++||||.|+++.+||||||||||||.+|
T Consensus 803 tl~e~ge~i~vnvRVGqav~tVGqaGrPKkitgw~ThttPVlL~h~eRAEl~td~y~~~tS~iEgvvILKKN~d~~e~ 880 (881)
T COG5110 803 TLSEKGEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPVLLSHKERAELDTDEYNVCTSYIEGVVILKKNPDYREE 880 (881)
T ss_pred EecCCCceeeeEEeecchhhhhhccCCCceeeeeeecCcceeeccchhhhcccccccchhhhhceeEEEecCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
No 3
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-112 Score=936.08 Aligned_cols=603 Identities=23% Similarity=0.342 Sum_probs=561.2
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhcCChhhhHH-HhcccChHHHHHHHHHhcccCCCCCcH--HHHHHHHHHHhccC--
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVE-HVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE-- 76 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~-~vd~~~~~ri~~Yl~~~~~~~~~~~~~--~vl~~~~~i~~~~~-- 76 (714)
++|++|+..|+..|++.+|++||+|++|+|+|++ .++.++....|.|++..+..++..+.+ ++++++++.|.+.+
T Consensus 132 ~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~P 211 (929)
T KOG2062|consen 132 DIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSP 211 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCC
Confidence 5899999999999999999999999999999999 577888889999999999999998886 69999999999875
Q ss_pred CHHHHHHHHHhcCChhHHHHHHhhc---chHHHHHHHHHHH---hhhcccccc----cCCCCCCcchHHHHHHHHcCcCc
Q 005098 77 EFPNALQIALFLDNMQYVKQIFTSC---DDLLRKKQFCYIL---ARHGITLEL----DDDMVPDDDDRYALQDIVNNVKL 146 (714)
Q Consensus 77 ~~~~al~~al~l~d~~~i~~i~~~~---~d~~~~~Qlaf~l---arq~~~~~~----~~~~~~~~~~~~~l~~il~n~~l 146 (714)
+|+..++|.+.++|++.+.++++++ +|.++++|+||+| +.|+|+..+ ..++..++..-+.+..||||+..
T Consensus 212 Dy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~t 291 (929)
T KOG2062|consen 212 DYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEET 291 (929)
T ss_pred CeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchH
Confidence 8999999999999999999999996 4579999999999 467776544 11122233445789999999999
Q ss_pred chhHHHHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccCCCcccccCCCCCCCCCccccc
Q 005098 147 SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWL 226 (714)
Q Consensus 147 ~~~~~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl 226 (714)
.+++++|.-+.|.+|.+..+.| |..+ | .+..|.|.+++|||||+||++|.|+|+|++ |+
T Consensus 292 ik~~l~FL~~~N~tD~~iL~~i-K~s~---r--------~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~---------Wl 350 (929)
T KOG2062|consen 292 IKLYLQFLLRHNNTDLLILEEI-KESV---R--------NSVCHTATLIANAFMHAGTTSDTFLRNNLD---------WL 350 (929)
T ss_pred HHHHHHHHHHcCCchHHHHHHH-HHHH---H--------HhhhhHHHHHHHHHHhcCCcchHHHHhchh---------HH
Confidence 9999999999999999999998 6544 3 577899999999999999999999999999 99
Q ss_pred ccccchhHHHHHHHhhhhhcccchhhHHhhhhhccC----CCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CC
Q 005098 227 FKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHS----TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-ED 301 (714)
Q Consensus 227 ~k~~~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s----~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~ 301 (714)
.|+++|+||+|+||||+||+||..+|++++.+|||+ ++.|.++||++|+|+||+||..+ +..+|..+|.+ ++
T Consensus 351 skAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~---~~~yL~~~Lk~~~~ 427 (929)
T KOG2062|consen 351 SKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG---ITDYLLQQLKTAEN 427 (929)
T ss_pred hhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc---HHHHHHHHHHhccc
Confidence 999999999999999999999999999999999997 67899999999999999999876 78999999875 46
Q ss_pred hHHHHHHHHHHHHHhccCCCHhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCch
Q 005098 302 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP 380 (714)
Q Consensus 302 ~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~ 380 (714)
+.+|+|+|||||++.+||.++++++.|+.++. |+++++| +|++||||+++||.+.++++.|+++ +.+|| |++
T Consensus 428 e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGE---AAgi~MGl~mlGt~~~eaiedm~~Y---a~ETQ-Hek 500 (929)
T KOG2062|consen 428 EVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGE---AAGIAMGLLMLGTANQEAIEDMLTY---AQETQ-HEK 500 (929)
T ss_pred hhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhh---HHHHhhhhHhhCcCcHHHHHHHHHH---hhhhh-HHH
Confidence 89999999999999999999999999999996 8888999 7999999999999999999999998 66889 999
Q ss_pred hHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHH
Q 005098 381 LTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 460 (714)
Q Consensus 381 ~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~ 460 (714)
+.|++++|++|+.+|++|.++.+|+.+..+.||+.|+++++++++||+||||..+|++|||++++|.+| +|||+||+|
T Consensus 501 i~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nD--DVrRaAVia 578 (929)
T KOG2062|consen 501 IIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVND--DVRRAAVIA 578 (929)
T ss_pred HHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccch--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 461 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 461 lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
||||.+++| ++++++++.|+.++|||||||+++|||+.|||||+.+++++|+++++|++++|||+|+||++|||+++
T Consensus 579 lGFVl~~dp---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 579 LGFVLFRDP---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred heeeEecCh---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C---chHHHHHHHHHHhhh---ccChhHHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHHhhccccccc
Q 005098 541 N---NARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVI 614 (714)
Q Consensus 541 ~---n~rv~~~lr~l~~~~---~~d~~~~~~~~lA~Gll~~G~g~~tls~~~sd~~~~~~~a~agLl~~l~~~~~~~~~~ 614 (714)
+ +|++..+.+++.+.. |+|..++||+.+||||+++||+|+|++.. ++.++.+..|++|+++|+|.|
T Consensus 656 t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislq-s~tg~~~~~~vvGl~~Flq~W------- 727 (929)
T KOG2062|consen 656 TEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQ-SMTGHTKLDAVVGLVVFLQYW------- 727 (929)
T ss_pred ccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEe-ccCCCCchHHHHHHHHHHHHH-------
Confidence 8 599999999998876 67889999999999999999999999997 888999999999999999987
Q ss_pred cCchhHHHHHHhhhccccEeEeecCCCCcceeeEEe
Q 005098 615 VGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRV 650 (714)
Q Consensus 615 ~~~~h~l~~~l~lA~~Pr~li~~d~~l~~~~v~vrv 650 (714)
-||+|.||++||+.|||+|++|+|++.|+++...
T Consensus 728 --yWfPL~~flSLaf~PT~vigln~dLk~Pk~e~~s 761 (929)
T KOG2062|consen 728 --YWFPLIHFLSLAFTPTTVIGLNEDLKIPKFEYIS 761 (929)
T ss_pred --HHHHHHHHHHHhcCcceEEEeccccCCcceeeec
Confidence 3556999999999999999999999999887753
No 4
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-93 Score=763.55 Aligned_cols=600 Identities=22% Similarity=0.297 Sum_probs=539.9
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcccChHHHHHHHHHhcccCCCCCcH--HHHHHHHHHHhcc--CC
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKF--EE 77 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~--~vl~~~~~i~~~~--~~ 77 (714)
.+++.|++.|++.++...+++|++|.-|+|.|+.++...+..++..|++..+..++....+ ++|+.+++++... .+
T Consensus 131 ~v~e~i~~kc~~~se~~~~lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pd 210 (926)
T COG5116 131 FVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPD 210 (926)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCc
Confidence 3688999999999999999999999999999999999999999999999999999887776 6999999998865 47
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhc---chHHHHHHHHHHH---hhhcccccccCCCCCCcchHHHHHHHHcCcCcchhHH
Q 005098 78 FPNALQIALFLDNMQYVKQIFTSC---DDLLRKKQFCYIL---ARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYL 151 (714)
Q Consensus 78 ~~~al~~al~l~d~~~i~~i~~~~---~d~~~~~Qlaf~l---arq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~ 151 (714)
|+-...|.+.|||.+.+.++++++ +|...--|+||++ +.|++..-+.....+ ...++.+..||||++..+++.
T Consensus 211 yf~v~k~vv~LnDa~~a~~L~~kL~~end~~l~aqvAFdledsasqe~leil~t~~vA-~~~d~av~~ILSGe~t~ky~~ 289 (926)
T COG5116 211 YFYVIKAVVYLNDAEKAKALIEKLVKENDLLLYAQVAFDLEDSASQEILEILVTELVA-QGYDQAVMSILSGEFTKKYLG 289 (926)
T ss_pred EEEEeEEEEEeccHHHHHHHHHHHHhhhhhhhhhhheehhccccCHHHHHhccchhhh-ccccHHHHHHhcCcchhHHHH
Confidence 888889999999999999999986 3444445999999 467776322111000 113468999999999999999
Q ss_pred HHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccCCCcccccCCCCCCCCCcccccccccc
Q 005098 152 TLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKE 231 (714)
Q Consensus 152 ~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl~k~~~ 231 (714)
.|.-++|.+|.+..+.- |+.++ .| .++.|.|.+++|+|||.|+++|.|+++|.+ |+.|+.+
T Consensus 290 ~FLl~~nntd~~~Ln~s-k~sl~-~k--------~s~fH~avs~AN~fMn~GTs~dsf~r~Nl~---------wlgka~n 350 (926)
T COG5116 290 AFLLEKNNTDFKFLNSS-KSSLA-RK--------FSRFHYAVSLANSFMNLGTSNDSFYRNNLD---------WLGKASN 350 (926)
T ss_pred HHHHhcCCcceeehhcc-hhhhh-hh--------hhhhhhHHHHHHHHhhcCCCcchHhhcCch---------hhhhcch
Confidence 99999999999998887 77775 33 468899999999999999999999999998 9999999
Q ss_pred hhHHHHHHHhhhhhcccchhhHHhhhhhccCC---CchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CC---hHH
Q 005098 232 HGKMSAAASLGMILLWDVDSGLAQIDKYFHST---DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-ED---ACI 304 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~---~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~---~~v 304 (714)
|+||+|+||||+||+|+..+|.+++.+|||++ +.+.++||++|+|+|++|+.++ ..++|.+++.+ .+ +.+
T Consensus 351 WaKFtatAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~---~TeYL~e~~~~teDe~~~~l 427 (926)
T COG5116 351 WAKFTATASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGRE---DTEYLLEYFLDTEDELTPEL 427 (926)
T ss_pred HhhhhhhhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCcc---cHHHHHHHhCcccccccHHH
Confidence 99999999999999999999999999999965 4599999999999999998776 56788877654 33 589
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh
Q 005098 305 RIGAIMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR 383 (714)
Q Consensus 305 ~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r 383 (714)
++|++||+|++.+||.|++++|.|+.++. |.++..| +|++++||+++||++.++++.|+++ +.+|| |+++.|
T Consensus 428 ~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~a~~ge---Aa~~gMGl~mLgt~s~eai~dm~ty---a~ETq-he~i~R 500 (926)
T COG5116 428 AYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGE---AAVYGMGLLMLGTWSVEAIEDMRTY---AGETQ-HERIKR 500 (926)
T ss_pred HHHHHhhhcchhcccccHHHHHHHHHHHhcchhhhhh---hhhhccceeeecCCCHHHHHHHHHH---hcchh-hhhHHh
Confidence 99999999999999999999999999996 7667777 7999999999999999999999998 67888 999999
Q ss_pred HHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHH
Q 005098 384 LIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAM 463 (714)
Q Consensus 384 ~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lal 463 (714)
++++|++|+.+||+|.++.++..|..+.+++.||++++++++||+||||..+|+.+||+..+|.+| +|||+||+++||
T Consensus 501 glgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nD--DVrRAAViAlGf 578 (926)
T COG5116 501 GLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGND--DVRRAAVIALGF 578 (926)
T ss_pred hhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCch--HHHHHHHHheee
Confidence 999999999999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred hhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC--
Q 005098 464 VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-- 541 (714)
Q Consensus 464 I~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~-- 541 (714)
|++.++ ..++++++.|+.++|+|||+|+++|||+.|||+|+..++|.|++++.|++++|||+|.||+|||.+++|
T Consensus 579 vc~~D~---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 579 VCCDDR---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred eEecCc---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 999998 889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -chHHHHHHHHHHhhh---ccChhHHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHHhhccccccccCc
Q 005098 542 -NARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGK 617 (714)
Q Consensus 542 -n~rv~~~lr~l~~~~---~~d~~~~~~~~lA~Gll~~G~g~~tls~~~sd~~~~~~~a~agLl~~l~~~~~~~~~~~~~ 617 (714)
||++..+.+.+.+.. |++.-+++|+.+||||..+||+|+|++.. +-.|.++-.+++||.+|+|+| -
T Consensus 656 Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~-natG~l~~~~ivGlv~FlqyW---------Y 725 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLR-NATGILSADRIVGLVLFLQYW---------Y 725 (926)
T ss_pred cChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEe-cccCcccHHHHHHHHHHHHHH---------H
Confidence 688877777776654 66778999999999999999999999986 558999999999999999986 3
Q ss_pred hhHHHHHHhhhccccEeEeecCCCCccee
Q 005098 618 YHYVLYFLVLAMQPRMLLTVDENLKPLSV 646 (714)
Q Consensus 618 ~h~l~~~l~lA~~Pr~li~~d~~l~~~~v 646 (714)
||+|.||.+|++.||.+|+++.+...++.
T Consensus 726 WfPL~hf~SLsf~Pttvigi~~s~~~pkF 754 (926)
T COG5116 726 WFPLIHFVSLSFLPTTVIGIRGSQAIPKF 754 (926)
T ss_pred HHHHHHHHhhhcCcceeecccccccCcee
Confidence 45699999999999999999877665544
No 5
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-51 Score=452.47 Aligned_cols=506 Identities=20% Similarity=0.264 Sum_probs=404.8
Q ss_pred CCChHHHHHHHHhcCC---hhhhHHHhcccChHHHHHHHHHhcccCCCCC-----c---HHHHHHHHHHHhccCCHHHHH
Q 005098 14 HNAEPEAVDLLMEVED---LDLLVEHVDATNFKRTCLYLTSAAKYLPGPD-----D---MLVLDIAYMIYLKFEEFPNAL 82 (714)
Q Consensus 14 ~n~e~~AvdlllE~~~---ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~-----~---~~vl~~~~~i~~~~~~~~~al 82 (714)
-++|.+|+..||.... +|.-.+|++...++.|..|+..++..+-.|+ | ..+.+.++..|...++|.+++
T Consensus 72 Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~ai 151 (929)
T KOG2062|consen 72 LGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAI 151 (929)
T ss_pred HHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3789999999999974 6667788988899999999999998887666 3 369999999999999999999
Q ss_pred HHHHhcCChhHHHH-HHhhcchHH---HHHHHHHHHh-----hhcccccc----cCCCCC-------------CcchHHH
Q 005098 83 QIALFLDNMQYVKQ-IFTSCDDLL---RKKQFCYILA-----RHGITLEL----DDDMVP-------------DDDDRYA 136 (714)
Q Consensus 83 ~~al~l~d~~~i~~-i~~~~~d~~---~~~Qlaf~la-----rq~~~~~~----~~~~~~-------------~~~~~~~ 136 (714)
++|++..+++.+++ ++++-.+.. ...-++.-+. |.++..-+ -..+.+ |.+...+
T Consensus 152 Gia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ 231 (929)
T KOG2062|consen 152 GIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVAD 231 (929)
T ss_pred hHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHH
Confidence 99999999999999 555422211 1111111111 22221110 111111 1111111
Q ss_pred HHHHHcCcC--c-------------chhH----------------HHHHHHhhccCCCChhHHHHhhhccCCCCCCcchh
Q 005098 137 LQDIVNNVK--L-------------SEGY----------------LTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVD 185 (714)
Q Consensus 137 l~~il~n~~--l-------------~~~~----------------~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~d 185 (714)
+-+=|.-+. + ++.| ....|..+|+++....++|..||.++++++...++
T Consensus 232 ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~ 311 (929)
T KOG2062|consen 232 LLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLILE 311 (929)
T ss_pred HHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHH
Confidence 111111111 0 1111 12345578899999999999999888888888888
Q ss_pred hHHHhHHHHHHHHHHhhcc-CCCcccccCCCCCCCCCcccccccccchhHHHHHHHhhhhhcccchhhHHhhhhhccCCC
Q 005098 186 SARQNLAATFVNAFVNAGF-GQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTD 264 (714)
Q Consensus 186 sa~~~la~~~~na~~~aG~-~~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~ 264 (714)
+.+.++ .|+..|..+ -...||+..++ +++|+..|-+| +| ...
T Consensus 312 ~iK~s~----r~sv~H~A~~iAN~fMh~GTT------~D~FlR~NL~W--------ls-------------------kAt 354 (929)
T KOG2062|consen 312 EIKESV----RNSVCHTATLIANAFMHAGTT------SDTFLRNNLDW--------LS-------------------KAT 354 (929)
T ss_pred HHHHHH----HHhhhhHHHHHHHHHHhcCCc------chHHHHhchhH--------Hh-------------------hcc
Confidence 888775 666666654 47888988777 78888888888 33 456
Q ss_pred chhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC----CChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhH
Q 005098 265 NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR----EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLD 340 (714)
Q Consensus 265 ~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~----~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e 340 (714)
+|.|+.|..+||+||.|+.++ ++++|.+||+. .+.....||++|||++++|+++. +.+.|+..|.+.+ +..
T Consensus 355 NWaKFtAtAsLGvIH~G~~~~---~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~-~e~ 429 (929)
T KOG2062|consen 355 NWAKFTATASLGVIHRGHENQ---AMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAE-NEV 429 (929)
T ss_pred hHhhhhhhhhcceeeccccch---HHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhcc-chh
Confidence 899999999999999999776 89999999987 45778899999999999999987 9999999987543 446
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHH
Q 005098 341 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 420 (714)
Q Consensus 341 ~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~ 420 (714)
++++++||||++.+||.++++++.+.+.|... +.....++++|+||++
T Consensus 430 v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D-----~AvsGEAAgi~MGl~m--------------------------- 477 (929)
T KOG2062|consen 430 VRHGACLGLGLAGMGSANEEIYEKLKEVLYND-----SAVSGEAAGIAMGLLM--------------------------- 477 (929)
T ss_pred hhhhhhhhccchhcccccHHHHHHHHHHHhcc-----chhhhhHHHHhhhhHh---------------------------
Confidence 78999999999999999999999999988632 1123345566666655
Q ss_pred HHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhh
Q 005098 421 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL 500 (714)
Q Consensus 421 ~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl 500 (714)
+||+|.+++.+|++|+.+++++ +++|+..+||+++++|+. |.+..++..|+.+.||.+|++.++++|+
T Consensus 478 -------lGt~~~eaiedm~~Ya~ETQHe--ki~RGl~vGiaL~~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~al 545 (929)
T KOG2062|consen 478 -------LGTANQEAIEDMLTYAQETQHE--KIIRGLAVGIALVVYGRQ---EDADPLIKELLRDKDPILRYGGMYTLAL 545 (929)
T ss_pred -------hCcCcHHHHHHHHHHhhhhhHH--HHHHHHHHhHHHHHhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHH
Confidence 5899999999999999999997 999999999999999997 8899999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHh-hcCCchHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHhhhccChhHHHHHHHHHhhhhcCC
Q 005098 501 LCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGLIGSGTNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGK 577 (714)
Q Consensus 501 ~~aGt~~~~ai~~L~~l-~~D~~~~Vr~~AiiAlGlV~aGt~n--~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G~ 577 (714)
.|+||||..||+.|.++ .+|++++||++|++|+|||+..+.+ |+++++|.+ +.|||+|+|+.||+||.|+|+
T Consensus 546 Ay~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse-----s~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 546 AYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE-----SYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred HHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh-----hcChhhhhhHHHHHhhhhcCC
Confidence 99999999999998888 8999999999999999999999886 788888888 889999999999999999999
Q ss_pred Cccc----ccccCCCC-CCCChHHHHHHHHHHHhhccc
Q 005098 578 GLLT----LNPYHSDR-FLLSPTALAGIVTTLFACLDM 610 (714)
Q Consensus 578 g~~t----ls~~~sd~-~~~~~~a~agLl~~l~~~~~~ 610 (714)
|+.. |+|+.+|. ++++|.|++++.+++.-+.|-
T Consensus 621 G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 621 GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 9985 99999998 999999999999999866554
No 6
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-47 Score=410.43 Aligned_cols=508 Identities=20% Similarity=0.258 Sum_probs=409.1
Q ss_pred HcCCChHHHHHHHHhcCC---hhhhHHHhcccChHHHHHHHHHhcccCCCCC----cH---HHHHHHHHHHhccCCHHHH
Q 005098 12 MKHNAEPEAVDLLMEVED---LDLLVEHVDATNFKRTCLYLTSAAKYLPGPD----DM---LVLDIAYMIYLKFEEFPNA 81 (714)
Q Consensus 12 ~~~n~e~~AvdlllE~~~---ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~----~~---~vl~~~~~i~~~~~~~~~a 81 (714)
.--++|.+|+..||.+.+ +|.-.+|+++..|+.|-.|+.....-+..|+ |. .|++.+.+.|.+.++|..+
T Consensus 70 y~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~ 149 (926)
T COG5116 70 YVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYL 149 (926)
T ss_pred HHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345899999999999988 7888999999999999999999988777776 43 5999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHhhcchHH---HHHHHHHHHh-----hhcccc---cc-cCCCCC-------------C------
Q 005098 82 LQIALFLDNMQYVKQIFTSCDDLL---RKKQFCYILA-----RHGITL---EL-DDDMVP-------------D------ 130 (714)
Q Consensus 82 l~~al~l~d~~~i~~i~~~~~d~~---~~~Qlaf~la-----rq~~~~---~~-~~~~~~-------------~------ 130 (714)
+++|++-.+.|.|+.+++.-.|-. ...-+|.-+. |..++. ++ ...|.+ |
T Consensus 150 lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~ 229 (926)
T COG5116 150 LGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKA 229 (926)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHH
Confidence 999999999999999998743221 1111121111 222211 11 000000 0
Q ss_pred ----------------------cchHHHHHHHHcCcCcchhHHHHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHH
Q 005098 131 ----------------------DDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSAR 188 (714)
Q Consensus 131 ----------------------~~~~~~l~~il~n~~l~~~~~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~ 188 (714)
+...+++.+||-.+-..+.|- -..++|+++....++|..||.++++++...+++++
T Consensus 230 L~~kL~~end~~l~aqvAFdledsasqe~leil~t~~vA~~~d--~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk 307 (926)
T COG5116 230 LIEKLVKENDLLLYAQVAFDLEDSASQEILEILVTELVAQGYD--QAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSK 307 (926)
T ss_pred HHHHHHhhhhhhhhhhheehhccccCHHHHHhccchhhhcccc--HHHHHHhcCcchhHHHHHHHHhcCCcceeehhcch
Confidence 001234445555444433332 34678999999999999999888888888899999
Q ss_pred HhHHHHHHHHHHhhccCCCcccccCCCCCCCCCcccccccccchhHHHHHHHhhhhhcccchhhHHhhhhhccCCCchhH
Q 005098 189 QNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVI 268 (714)
Q Consensus 189 ~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~ 268 (714)
.+++..|.- |-+++.-...||.-.+. +++++..|-+| +| +.++|.|
T Consensus 308 ~sl~~k~s~-fH~avs~AN~fMn~GTs------~dsf~r~Nl~w--------lg-------------------ka~nWaK 353 (926)
T COG5116 308 SSLARKFSR-FHYAVSLANSFMNLGTS------NDSFYRNNLDW--------LG-------------------KASNWAK 353 (926)
T ss_pred hhhhhhhhh-hhhHHHHHHHHhhcCCC------cchHhhcCchh--------hh-------------------hcchHhh
Confidence 999975443 44455557788877665 77888888888 44 5678999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHhccCC---ChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCC--CChhHHHH
Q 005098 269 AGALLGVGIVNCGIRNDCDPALALLSEYVGRE---DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA--KSPLDVIA 343 (714)
Q Consensus 269 ~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~---~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~--~~~~e~~~ 343 (714)
+.|..+||+||.|..++ .++.|.+||+.. +...+.||.+|||++++|.+ ++..|.|+..+.|+ ....+.+.
T Consensus 354 FtatAslGvIH~gn~n~---~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfg-r~~TeYL~e~~~~teDe~~~~l~y 429 (926)
T COG5116 354 FTATASLGVIHLGNSNP---GYEILKPYLPSEVASSRQKEGGALYALGLIKAGFG-REDTEYLLEYFLDTEDELTPELAY 429 (926)
T ss_pred hhhhhhceeEeeccCCc---hhHhhhccCCcccchhhhccCceeeeehhhccCcC-cccHHHHHHHhCcccccccHHHHH
Confidence 99999999999998877 789999999864 34677799999999999955 57889999776543 24457788
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHH
Q 005098 344 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 423 (714)
Q Consensus 344 ~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~ 423 (714)
+++||+||+.+||.|+++.+.+.+.+... +.....++++|+||++
T Consensus 430 G~~LGiGL~~MgSan~eiye~lKe~l~nD-----~a~~geAa~~gMGl~m------------------------------ 474 (926)
T COG5116 430 GVCLGIGLINMGSANREIYEKLKELLKND-----RALLGEAAVYGMGLLM------------------------------ 474 (926)
T ss_pred HHHhhhcchhcccccHHHHHHHHHHHhcc-----hhhhhhhhhhccceee------------------------------
Confidence 99999999999999999999999887532 2224455666666666
Q ss_pred HHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhcc
Q 005098 424 SCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI 503 (714)
Q Consensus 424 glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~a 503 (714)
.||+.+++|.+|++|+.+++++ .++|+.-+|++||.+++. ||+.+++..|+.+.+|..||+.+|++|++|+
T Consensus 475 ----Lgt~s~eai~dm~tya~ETqhe--~i~Rglgig~aLi~ygrq---e~add~I~ell~d~ds~lRy~G~fs~alAy~ 545 (926)
T COG5116 475 ----LGTWSVEAIEDMRTYAGETQHE--RIKRGLGIGFALILYGRQ---EMADDYINELLYDKDSILRYNGVFSLALAYV 545 (926)
T ss_pred ----ecCCCHHHHHHHHHHhcchhhh--hHHhhhhhhhhHhhhhhH---HHHHHHHHHHhcCchHHhhhccHHHHHHHHh
Confidence 4899999999999999999997 999999999999999997 9999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHh-hcCCchHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHhhhccChhHHHHHHHHHhhhhcCCCcc
Q 005098 504 SNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGLIGSGTNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 504 Gt~~~~ai~~L~~l-~~D~~~~Vr~~AiiAlGlV~aGt~n--~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G~g~~ 580 (714)
||+|..++..|.++ .+|.+++||++|++|+|+|+....| ++.+++|.. +.|+++|.|+.+|+||.|+|+|.-
T Consensus 546 GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~-----shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 546 GTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSE-----SHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhh-----ccchhhhhhhHHHhhhhhcCCccH
Confidence 99999999999888 8999999999999999999998887 455666666 789999999999999999999987
Q ss_pred c----ccccCCCC-CCCChHHHHHHHHHHHhhc
Q 005098 581 T----LNPYHSDR-FLLSPTALAGIVTTLFACL 608 (714)
Q Consensus 581 t----ls~~~sd~-~~~~~~a~agLl~~l~~~~ 608 (714)
. |+|+..|. ++++|.|++|+.+++.-+-
T Consensus 621 ~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 621 VATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 4 89998887 8999999999999987553
No 7
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=353.44 Aligned_cols=470 Identities=18% Similarity=0.256 Sum_probs=365.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcc---cChHHHHHHHHHhcccCCCCCc-HHHHHHHHHHHhccCCH
Q 005098 3 LVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAKYLPGPDD-MLVLDIAYMIYLKFEEF 78 (714)
Q Consensus 3 lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~---~~~~ri~~Yl~~~~~~~~~~~~-~~vl~~~~~i~~~~~~~ 78 (714)
+.+-....++|.|++++|+-+|+..++.+.++++++. ..+++.|.|++.+++...+-.+ ..+-+.+-+- +.+++
T Consensus 241 ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~--~Lse~ 318 (878)
T KOG2005|consen 241 LLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNG--KLSEH 318 (878)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccc--cHHHH
Confidence 4566778999999999999999999999999999986 3368999999999998887653 4444433333 45689
Q ss_pred HHHHHHHHhcCChhHHHHHHhh-cchHHHHHHHHHHHhhhcccccccCCCCCCcchHHHHHHHHcCcCcchhHHHH--HH
Q 005098 79 PNALQIALFLDNMQYVKQIFTS-CDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTL--AR 155 (714)
Q Consensus 79 ~~al~~al~l~d~~~i~~i~~~-~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~--~~ 155 (714)
+.++...+++.+++.+++|||+ ++|...----.-+.|||++...+ .+.|++. ++
T Consensus 319 f~~LarELeimepk~pedIyK~hl~~~r~~s~a~vdSarqnla~~f-----------------------vNgFVn~Gyg~ 375 (878)
T KOG2005|consen 319 FLYLARELEIMEPKVPEDIYKSHLEDSRGGSGAGVDSARQNLAATF-----------------------VNGFVNAGYGQ 375 (878)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHhccccccccCccHHHHHHHHHH-----------------------HHHHhhcccCC
Confidence 9999999999999999999998 45543111112455666665543 2344443 56
Q ss_pred HhhccCCC--ChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccC-CCcccccCCCCCCCCCcccccccccch
Q 005098 156 DIEVMEPK--SPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNWLFKNKEH 232 (714)
Q Consensus 156 ~l~~~~~k--~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~-~d~~l~~~~~~~~~~~~~~wl~k~~~~ 232 (714)
+.-++++. ...|+||+... +. -||.++++.+..| -+..|.. .|++++. +.++
T Consensus 376 Dkl~~~~~~s~~~w~yknke~-g~-------~sa~aS~G~I~~W-nvd~gL~qldkylys----------------~~~~ 430 (878)
T KOG2005|consen 376 DKLMLVQEGSRVNWLYKNKEH-GM-------TSAAASLGMIQLW-NVDKGLEQLDKYLYS----------------DESY 430 (878)
T ss_pred CceeccCccccCcceeecccc-Cc-------hHhhhhcchhhee-cchhhHHHHHHHhhc----------------CCch
Confidence 66666544 55799998754 22 2788888876665 6777755 6666555 4558
Q ss_pred hHHHHHHHhhhhhcc---cchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChH--HHHH
Q 005098 233 GKMSAAASLGMILLW---DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC--IRIG 307 (714)
Q Consensus 233 ~~~~a~aslGlI~~~---~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~--v~~g 307 (714)
.|.+|..++|++..| +.++++++|.+|+.++++-.+.||++|||++++|+.+|. ++.+|+|.+.+.+.. +..-
T Consensus 431 ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~--V~~lL~Pi~~d~~~~~ev~~~ 508 (878)
T KOG2005|consen 431 IKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREE--VLELLSPIMFDTKSPMEVVAF 508 (878)
T ss_pred hhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHH--HHHHHhHHhcCCCCchhHHHH
Confidence 999999999998877 578899999999999999999999999999999987664 777999999876655 6667
Q ss_pred HHHHHHHHhccCCCHhHHHHHHhhhcCC---CChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH
Q 005098 308 AIMGLGISYAGTQNDQIRHKLSTILNDA---KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL 384 (714)
Q Consensus 308 A~lGLGl~y~Gs~~~~i~e~L~~~l~d~---~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~ 384 (714)
|.++||++|+||||+|+...+++.++|. +....+.++-+||||++|+|++ |.+++....++. ..+++++.
T Consensus 509 aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--e~~d~~~e~~~~-----i~~~~~~~ 581 (878)
T KOG2005|consen 509 ASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--ESVDAVVETIKA-----IEGPIRKH 581 (878)
T ss_pred HHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--chHHHHHHHHHH-----hhhHHHHH
Confidence 8999999999999999999999988743 2344567899999999999998 456777766653 26778887
Q ss_pred HHH-HHhHhhcCChh--hH--HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH----H---HHHHHHhhccccCCCCcc
Q 005098 385 IPL-GLGLLYLGKQE--SV--EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV----L---KVQNLLGHCAQHHEKGEA 452 (714)
Q Consensus 385 a~l-~lgLi~lG~~e--~~--~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~----~---~i~~LL~~~~~~~~~~~~ 452 (714)
+.+ -.+|.|.|+++ .+ +.+...+.+....-.......++|||....|+. . .+.++|||..+ .
T Consensus 582 ~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~------~ 655 (878)
T KOG2005|consen 582 ESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEP------H 655 (878)
T ss_pred HHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCH------H
Confidence 765 55888999987 34 555555555444444444467889999988884 2 34467888653 7
Q ss_pred ccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhh----cCCchHHHHH
Q 005098 453 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS----HDTDSEVAMA 528 (714)
Q Consensus 453 vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~----~D~~~~Vr~~ 528 (714)
+||+.++++|+++.++| +-.+.+++++++|+.|++|.+.+++||||++|||+|.++..+|+++. +|++.. ..
T Consensus 656 iRravPLal~llsvSNP--q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~L--f~ 731 (878)
T KOG2005|consen 656 IRRAVPLALGLLSVSNP--QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKAL--FV 731 (878)
T ss_pred HHHHHHHHHhhhccCCC--cchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhH--HH
Confidence 99999999999999999 35699999999999999999999999999999999999999999885 344433 33
Q ss_pred HHHHHHHHcCCCC
Q 005098 529 AVISLGLIGSGTN 541 (714)
Q Consensus 529 AiiAlGlV~aGt~ 541 (714)
..||+|++..|.+
T Consensus 732 vriAQGL~hlGKG 744 (878)
T KOG2005|consen 732 VRIAQGLVHLGKG 744 (878)
T ss_pred HHHHHHHHHhcCC
Confidence 3499999999876
No 8
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=356.18 Aligned_cols=443 Identities=20% Similarity=0.270 Sum_probs=314.1
Q ss_pred cccchhHHHHHHHhhhhhcccchhhH--HhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHH
Q 005098 228 KNKEHGKMSAAASLGMILLWDVDSGL--AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIR 305 (714)
Q Consensus 228 k~~~~~~~~a~aslGlI~~~~~~~~l--~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~ 305 (714)
.-++|+.|.+..|.|+--.- .++.. ++|.-.-+.+.+..++|.++|||+- ||...-. .--+-.||...++.+.
T Consensus 814 ~~teWp~FhngVa~GLrIsp-~~~~Ids~WI~fnkp~~~~a~haGfl~glGLn--GhL~~L~--~~~i~qyls~~h~~tS 888 (1496)
T KOG1858|consen 814 ELTEWPEFHNGVASGLRISP-FATEIDSSWIVFNKPKELTAEHAGFLFGLGLN--GHLKALN--TWHIYQYLSPKHEMTS 888 (1496)
T ss_pred ccccchhhHHHHHhhcccCc-ccccccceeEEEecCCCcchheeheeeecccc--ccccccc--HHHHHHHccCCCccee
Confidence 34679999888888873321 11100 1122112456788899999999985 6654321 1123467888889999
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHhhhc---C-----CCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccc-
Q 005098 306 IGAIMGLGISYAGTQNDQIRHKLSTILN---D-----AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESE- 376 (714)
Q Consensus 306 ~gA~lGLGl~y~Gs~~~~i~e~L~~~l~---d-----~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~- 376 (714)
+|-++|++.+|.||++.++.+.|.-++. . -+++.-++.||.+|+||+|.||++..+.|.|+..+......+
T Consensus 889 vgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~ 968 (1496)
T KOG1858|consen 889 VGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPEN 968 (1496)
T ss_pred HHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCccc
Confidence 9999999999999999988888765553 1 123334466899999999999999999999998886543221
Q ss_pred --cCchhHhHHHHHHhHhhcCChhhHHHH---------HHHHh-------------------------hchhhhhhhhHH
Q 005098 377 --LGEPLTRLIPLGLGLLYLGKQESVEAT---------AEVSK-------------------------TFNEKIRKYCDM 420 (714)
Q Consensus 377 --l~~~~~r~a~l~lgLi~lG~~e~~~~l---------l~~L~-------------------------~~~~~~~r~~~~ 420 (714)
-+|.|.++|++++||+++|+++....+ ..-+. ..+-.+..+|++
T Consensus 969 ~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAv 1048 (1496)
T KOG1858|consen 969 VLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAV 1048 (1496)
T ss_pred chhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHH
Confidence 178899999999999999987643222 11111 011134467999
Q ss_pred HHHHHHhhcCCCHHHHHHHHhhccccCCCC---ccccchhHHHHHHhhcccc-----hhhhhHHHHHHHHHhc-------
Q 005098 421 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKG---EAYQGPAVLGIAMVAMAEE-----LGLEMAIRSLEHLLQY------- 485 (714)
Q Consensus 421 ~~~glayaGtGn~~~i~~LL~~~~~~~~~~---~~vrr~avl~lalI~~~~~-----~~~~~~~~~l~~L~~~------- 485 (714)
+|+++.|..|+|..+. ..|+.-......+ ++.--..++|..+|+|.+- +-..++|+.+..-..+
T Consensus 1049 iAl~mmflktnn~~Ia-~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~dvd~~ 1127 (1496)
T KOG1858|consen 1049 IALGMMFLKTNNFEIA-NALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQEDVDLE 1127 (1496)
T ss_pred HHHHHHHHHhchHHHH-hhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhhhhhh
Confidence 9999999999997644 4333322221110 1444578999999999863 2234455554321111
Q ss_pred ----CCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCC-----------c----hH----HHHHHHHHHHHHcCCCCc
Q 005098 486 ----GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT-----------D----SE----VAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 486 ----~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~-----------~----~~----Vr~~AiiAlGlV~aGt~n 542 (714)
---++-.|+|+++||.+|||+|..+.++|..+..|- + .. +-+-.++++++||+|++|
T Consensus 1128 tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagSgd 1207 (1496)
T KOG1858|consen 1128 TLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGSGD 1207 (1496)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhcCc
Confidence 013789999999999999999999999987764321 1 11 224468999999999999
Q ss_pred hHHHHHHHHHHhhhc----cChhHHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHHhhccccccccCch
Q 005098 543 ARIAGMLRNLSSYYY----KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKY 618 (714)
Q Consensus 543 ~rv~~~lr~l~~~~~----~d~~~~~~~~lA~Gll~~G~g~~tls~~~sd~~~~~~~a~agLl~~l~~~~~~~~~~~~~~ 618 (714)
.+|.+.+|.|++..+ .+...+|++|||+|++++|+|++|+|+ ++.++|.+++.+|+-++ .++-++++
T Consensus 1208 leVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~--------s~~sIa~ll~slfp~fP-~~~~Dnr~ 1278 (1496)
T KOG1858|consen 1208 LEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTIST--------SNLSIAALLISLFPHFP-ISPSDNRY 1278 (1496)
T ss_pred hHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCC--------CcHHHHHHHHHhCCCCC-CCCcccHH
Confidence 999888888887754 344579999999999999999999999 57999999999998664 45668899
Q ss_pred hH--HHHHHhhhccccEeEeecCCC-CcceeeEEecceeeccccCCCcceeccceeeecceeccC---CCeeeeccCCcc
Q 005098 619 HY--VLYFLVLAMQPRMLLTVDENL-KPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAA---GDRAELATEKYI 692 (714)
Q Consensus 619 h~--l~~~l~lA~~Pr~li~~d~~l-~~~~v~vrvg~~vd~vg~~g~p~~itg~qt~~tPvll~~---~erael~~~~~~ 692 (714)
|+ +||+|++|++||+++++|.|. .|+.+++.|++. +++.- -+|..+|++|+. -.+.....++||
T Consensus 1279 hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k---------~~~~~-~~~~iap~lLP~~~~l~~v~v~g~~yw 1348 (1496)
T KOG1858|consen 1279 HLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQK---------GTTLY-SLTEIAPILLPEYSTLSSVSVLGPNYW 1348 (1496)
T ss_pred HHHHHHHHHHHhcccccccccccccCceEEEeeeEEec---------ccchh-hhhhcCCeeccccccchhhhhcCCccc
Confidence 87 999999999999999999765 566788877551 11110 123579999976 446777788999
Q ss_pred ccC
Q 005098 693 PLS 695 (714)
Q Consensus 693 ~~~ 695 (714)
|+.
T Consensus 1349 ~~~ 1351 (1496)
T KOG1858|consen 1349 PVK 1351 (1496)
T ss_pred eEE
Confidence 974
No 9
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=303.04 Aligned_cols=471 Identities=19% Similarity=0.253 Sum_probs=354.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcc---cChHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHH
Q 005098 3 LVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFP 79 (714)
Q Consensus 3 lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~---~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~ 79 (714)
+-+-+..+++|.|+..+|+-.|++.+..+.|.+++++ ..|.+.|+|++..++...+-.|.++-..+-+- +.++++
T Consensus 243 ~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~dee~~dil~Ng--~lsdhf 320 (881)
T COG5110 243 LLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASDEEEKDILSNG--YLSDHF 320 (881)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCCHHHHHHhcCC--cHHHHH
Confidence 4566778999999999999999999999999999986 45799999999999988887776554444333 345899
Q ss_pred HHHHHHHhcCChhHHHHHHhh-cchHHHHHHHH-HHHhhhcccccccCCCCCCcchHHHHHHHHcCcCcchhHHHHHHHh
Q 005098 80 NALQIALFLDNMQYVKQIFTS-CDDLLRKKQFC-YILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDI 157 (714)
Q Consensus 80 ~al~~al~l~d~~~i~~i~~~-~~d~~~~~Qla-f~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l 157 (714)
.+++..+++.+|+.+++||+. ++...--+|.| ...|+|++...+ .+.++++..+.
T Consensus 321 ~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~f-----------------------vn~~inlgy~n 377 (881)
T COG5110 321 RYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGF-----------------------VNDPINLGYEN 377 (881)
T ss_pred HHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhHHHHhh-----------------------hccccccCccC
Confidence 999999999999999999998 65544556666 667777776655 23345566667
Q ss_pred hccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccC-CCcccccCCCCCCCCCcccccccccchhHHH
Q 005098 158 EVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNWLFKNKEHGKMS 236 (714)
Q Consensus 158 ~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~-~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~ 236 (714)
|-+-|..-+||||.... .+-||.++.+....| -+..|.. -|+ ++|....+.|.+
T Consensus 378 D~li~~dd~wiyk~k~~--------gliSa~aSIG~i~~W-N~d~gl~~Ldk----------------yly~de~~~KaG 432 (881)
T COG5110 378 DSLIPLDDEWIYKCKVP--------GLISAFASIGVIESW-NSDKGLETLDK----------------YLYADESYRKAG 432 (881)
T ss_pred CeeeecchhhhhcCCCC--------Chhheeecchhhhhh-hhHhhHHHHHH----------------HHhcCccccccc
Confidence 77767777999998643 233677777765555 3444433 344 455555688999
Q ss_pred HHHHhhhhhccc---chhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChH--HHHHHHHH
Q 005098 237 AAASLGMILLWD---VDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC--IRIGAIMG 311 (714)
Q Consensus 237 a~aslGlI~~~~---~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~--v~~gA~lG 311 (714)
|..++|+...+. .++++.++.+|+.+++...++.|++|||++++|..+| .++.+|.|...+.+.+ +..-|.+.
T Consensus 433 aLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~e--evl~lL~Pi~~std~pie~~~~aslt 510 (881)
T COG5110 433 ALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAE--EVLELLQPIMFSTDSPIEVVFFASLT 510 (881)
T ss_pred ceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHH--HHHHHhhhhhcCCCCcHHHHHHHHHh
Confidence 999999876654 4568999999999999999999999999999998665 4999999999887764 44578999
Q ss_pred HHHHhccCCCHhHHHHHHhhhcC---CCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHH-H
Q 005098 312 LGISYAGTQNDQIRHKLSTILND---AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP-L 387 (714)
Q Consensus 312 LGl~y~Gs~~~~i~e~L~~~l~d---~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~-l 387 (714)
||.+|+||||+|+...+++.+.+ .+...+|-++.+||||++|.|.++ .++.....++.- ..+..+... +
T Consensus 511 Lg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d--~~d~v~eti~aI-----eg~ls~~~eiL 583 (881)
T COG5110 511 LGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKD--QVDDVEETIMAI-----EGALSKHEEIL 583 (881)
T ss_pred hhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccc--hhHHHHHHHHHh-----cchhhhhHHHH
Confidence 99999999999999999888752 234567888999999999999986 344455555431 122333222 3
Q ss_pred HHhHhhcCChh--hHHHHHHHHhhchhhh-----hhhhHHHHHHHHhhcCCCH-------HHHHHHHhhccccCCCCccc
Q 005098 388 GLGLLYLGKQE--SVEATAEVSKTFNEKI-----RKYCDMTLLSCAYAGTGNV-------LKVQNLLGHCAQHHEKGEAY 453 (714)
Q Consensus 388 ~lgLi~lG~~e--~~~~ll~~L~~~~~~~-----~r~~~~~~~glayaGtGn~-------~~i~~LL~~~~~~~~~~~~v 453 (714)
.-|+-|.|+++ .++.++..+.+.+..- .---...++|||....|+. ..+.+++||..+ .+
T Consensus 584 v~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~------hi 657 (881)
T COG5110 584 VKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSS------HI 657 (881)
T ss_pred HhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcH------HH
Confidence 44677888887 4666665333211111 1111134678888888873 234467777654 58
Q ss_pred cchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhc----CCchHHHHHH
Q 005098 454 QGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH----DTDSEVAMAA 529 (714)
Q Consensus 454 rr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~----D~~~~Vr~~A 529 (714)
|++.++++|++..++| +..+.+++++.+|+++-+|-+..++||||++|||.|.+...+|+++.+ +++.. ...
T Consensus 658 R~~~PLa~gils~SnP--Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaSYY~kes~aL--fv~ 733 (881)
T COG5110 658 RSVLPLAYGILSPSNP--QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLASYYYKESKAL--FVL 733 (881)
T ss_pred HHHHHHHHhcccCCCc--chHHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhhccchh--hHH
Confidence 9999999999999999 345999999999999999999999999999999999999999988753 44332 233
Q ss_pred HHHHHHHcCCCCc
Q 005098 530 VISLGLIGSGTNN 542 (714)
Q Consensus 530 iiAlGlV~aGt~n 542 (714)
.||+|++..|.+-
T Consensus 734 riAQGLl~LGKGt 746 (881)
T COG5110 734 RIAQGLLSLGKGT 746 (881)
T ss_pred HHHHHHHHhcCCc
Confidence 5999999998763
No 10
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-15 Score=177.15 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=143.6
Q ss_pred HHHHHHhhccCCCcccccCCCCCCCCCcccccccccchhHHHH---HHHhhhhhcccchhh-HHhhhhhccCCCchhHHH
Q 005098 195 FVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSA---AASLGMILLWDVDSG-LAQIDKYFHSTDNHVIAG 270 (714)
Q Consensus 195 ~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~a---~aslGlI~~~~~~~~-l~~l~~yL~s~~~~~~~G 270 (714)
--|+-+|.|.....-+.+..+ +++++||..||.- +..| ..-+|+-..||.+.- .-.+.+||.+.++.+..|
T Consensus 816 teWp~FhngVa~GLrIsp~~~----~Ids~WI~fnkp~-~~~a~haGfl~glGLnGhL~~L~~~~i~qyls~~h~~tSvg 890 (1496)
T KOG1858|consen 816 TEWPEFHNGVASGLRISPFAT----EIDSSWIVFNKPK-ELTAEHAGFLFGLGLNGHLKALNTWHIYQYLSPKHEMTSVG 890 (1496)
T ss_pred ccchhhHHHHHhhcccCcccc----cccceeEEEecCC-CcchheeheeeecccccccccccHHHHHHHccCCCcceeHH
Confidence 367777777776666665543 5899999988854 2222 111344347787641 224678899999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHhccC----------CChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcC-CC---
Q 005098 271 ALLGVGIVNCGIRNDCDPALALLSEYVGR----------EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILND-AK--- 336 (714)
Q Consensus 271 AllaLGli~~G~~~e~d~~~~lL~~~L~~----------~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d-~~--- 336 (714)
.++|++..|.|+++. ++.++|+-||.. -+..+|.+|++|+|+.|+||+|+.+.+.|+..+.. ++
T Consensus 891 LLlGlsaS~~GtmD~--ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~ 968 (1496)
T KOG1858|consen 891 LLLGLSASYRGTMDA--KITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPEN 968 (1496)
T ss_pred HHhhhhHhhcCccch--hHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCccc
Confidence 999999999998643 488999999864 13679999999999999999999999999988852 21
Q ss_pred -Ch-hHHHHHHHHHHHhHhcCCCCH-------HHHHHHHHHHhhcC--------------cccc-------CchhHhHHH
Q 005098 337 -SP-LDVIAFSAISLGLIYVGSCNE-------EVAQAIIFALMDRS--------------ESEL-------GEPLTRLIP 386 (714)
Q Consensus 337 -~~-~e~~~~AalaLGLi~lGs~~~-------~~~e~Ll~~L~~~~--------------~~~l-------~~~~~r~a~ 386 (714)
+. .++..+|+++||+|++|.|+. ...+.++.+|.+.. .+|+ -+.-+.+|+
T Consensus 969 ~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAv 1048 (1496)
T KOG1858|consen 969 VLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAV 1048 (1496)
T ss_pred chhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHH
Confidence 12 235789999999999999864 45778888887320 0000 112245899
Q ss_pred HHHhHhhcCChh
Q 005098 387 LGLGLLYLGKQE 398 (714)
Q Consensus 387 l~lgLi~lG~~e 398 (714)
+|++++|+.+++
T Consensus 1049 iAl~mmflktnn 1060 (1496)
T KOG1858|consen 1049 IALGMMFLKTNN 1060 (1496)
T ss_pred HHHHHHHHHhch
Confidence 999999998765
No 11
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=1.7e-09 Score=114.75 Aligned_cols=244 Identities=14% Similarity=0.106 Sum_probs=125.2
Q ss_pred HHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC---CHhHHHHHH
Q 005098 253 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ---NDQIRHKLS 329 (714)
Q Consensus 253 l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~---~~~i~e~L~ 329 (714)
...|.++|.+++..++..|+.+|+.+.. +.++..+...+.++++.+|..|+-+||-+ |.. .+++...|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L~ 96 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------QDVFRLAIELCSSKNPIERDIGADILSQL--GMAKRCQDNVFNILN 96 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------chHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCccchHHHHHHHH
Confidence 3456677777888888888888886632 22666777777778888888888888874 432 245777777
Q ss_pred hhh-cCCCChhHHHHHHHHHHHhHhcCCCC----HHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHH
Q 005098 330 TIL-NDAKSPLDVIAFSAISLGLIYVGSCN----EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATA 404 (714)
Q Consensus 330 ~~l-~d~~~~~e~~~~AalaLGLi~lGs~~----~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll 404 (714)
..+ .|+ ..+++..|+-+||-+ |+.. .++++.+...+.+ .+..+|..+ +.+|..+|.++.++.++
T Consensus 97 ~l~~~D~--d~~VR~~A~~aLG~~--~~~~~~~~~~a~~~l~~~~~D------~~~~VR~~a-~~aLg~~~~~~ai~~L~ 165 (280)
T PRK09687 97 NLALEDK--SACVRASAINATGHR--CKKNPLYSPKIVEQSQITAFD------KSTNVRFAV-AFALSVINDEAAIPLLI 165 (280)
T ss_pred HHHhcCC--CHHHHHHHHHHHhcc--cccccccchHHHHHHHHHhhC------CCHHHHHHH-HHHHhccCCHHHHHHHH
Confidence 663 454 345556777788854 3322 2333433333211 122233222 22333555555555555
Q ss_pred HHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHh
Q 005098 405 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 484 (714)
Q Consensus 405 ~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~ 484 (714)
..|. ++++..|+.++.++|-. +.++..++..|.+.+.+... .||..|+.|+|.+ +++ .-++.++.. ++
T Consensus 166 ~~L~-d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~---~VR~~A~~aLg~~--~~~---~av~~Li~~-L~ 233 (280)
T PRK09687 166 NLLK-DPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNE---EIRIEAIIGLALR--KDK---RVLSVLIKE-LK 233 (280)
T ss_pred HHhc-CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCh---HHHHHHHHHHHcc--CCh---hHHHHHHHH-Hc
Confidence 5554 23444555444443322 34444444444444432211 4555555555553 222 223332322 23
Q ss_pred cCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhc-CCchHHHHHHHHHH
Q 005098 485 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISL 533 (714)
Q Consensus 485 ~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~-D~~~~Vr~~AiiAl 533 (714)
+. .+|..++-|||-+ |.++++..|.++++ ++|..|++-|+-++
T Consensus 234 ~~--~~~~~a~~ALg~i----g~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 234 KG--TVGDLIIEAAGEL----GDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred CC--chHHHHHHHHHhc----CCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 22 2445555555544 33455555555553 45555555544443
No 12
>PRK09687 putative lyase; Provisional
Probab=99.21 E-value=3e-09 Score=112.88 Aligned_cols=242 Identities=14% Similarity=0.097 Sum_probs=170.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC---HHHHHHHH
Q 005098 290 LALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN---EEVAQAII 366 (714)
Q Consensus 290 ~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~---~~~~e~Ll 366 (714)
...|.++|.+++..+|..|+.+|+.. | .+++...+...+.|++ ..++.+|+.+||-+ |... .++...|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~--~--~~~~~~~l~~ll~~~d--~~vR~~A~~aLg~l--g~~~~~~~~a~~~L~ 96 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR--G--GQDVFRLAIELCSSKN--PIERDIGADILSQL--GMAKRCQDNVFNILN 96 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc--C--cchHHHHHHHHHhCCC--HHHHHHHHHHHHhc--CCCccchHHHHHHHH
Confidence 45677888999999999999999863 4 4678888888777653 45566899999975 5432 34555555
Q ss_pred HHHhhcCccccCchhHh-HHHHHHhHhhcCChhh------HHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHH
Q 005098 367 FALMDRSESELGEPLTR-LIPLGLGLLYLGKQES------VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNL 439 (714)
Q Consensus 367 ~~L~~~~~~~l~~~~~r-~a~l~lgLi~lG~~e~------~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~L 439 (714)
..+.+ + .+..+| .++-+|| ++|.+.. .+.+.. +..++++.+|+.++.++| ..|+..++..|
T Consensus 97 ~l~~~----D-~d~~VR~~A~~aLG--~~~~~~~~~~~~a~~~l~~-~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L 164 (280)
T PRK09687 97 NLALE----D-KSACVRASAINATG--HRCKKNPLYSPKIVEQSQI-TAFDKSTNVRFAVAFALS----VINDEAAIPLL 164 (280)
T ss_pred HHHhc----C-CCHHHHHHHHHHHh--cccccccccchHHHHHHHH-HhhCCCHHHHHHHHHHHh----ccCCHHHHHHH
Confidence 44332 1 344555 4444555 4554332 222222 233457788888777664 55788999999
Q ss_pred HhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhc
Q 005098 440 LGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 519 (714)
Q Consensus 440 L~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~ 519 (714)
+..+.+... +||..|+.++|-+..++| .+...+..++.+.++.||..++.+||-+ ++.+++..|.+.+.
T Consensus 165 ~~~L~d~~~---~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~ 233 (280)
T PRK09687 165 INLLKDPNG---DVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELK 233 (280)
T ss_pred HHHhcCCCH---HHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHc
Confidence 999875433 899999999999955554 4555556666889999999999999986 67899999999999
Q ss_pred CCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHH
Q 005098 520 DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 569 (714)
Q Consensus 520 D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA 569 (714)
|++ ++..|+.|+|-++- ++....|.++... ..|+.++.-++-|
T Consensus 234 ~~~--~~~~a~~ALg~ig~----~~a~p~L~~l~~~-~~d~~v~~~a~~a 276 (280)
T PRK09687 234 KGT--VGDLIIEAAGELGD----KTLLPVLDTLLYK-FDDNEIITKAIDK 276 (280)
T ss_pred CCc--hHHHHHHHHHhcCC----HhHHHHHHHHHhh-CCChhHHHHHHHH
Confidence 877 78889999999844 4555666666553 3477666665544
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.10 E-value=2.2e-08 Score=122.40 Aligned_cols=287 Identities=17% Similarity=0.091 Sum_probs=198.2
Q ss_pred chhHHHHHHHhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHH
Q 005098 231 EHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIM 310 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~l 310 (714)
.|.++.++.+|+ ++.+..|..+|.++++.+|..|+.+||-+.. +.++..|...|.+++..+|..|+-
T Consensus 608 ~~~~~~~~~~l~-------~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~ 674 (897)
T PRK13800 608 PSPRILAVLALD-------APSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAE 674 (897)
T ss_pred chHHHHHHHhcc-------chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHH
Confidence 477887777662 2345678888999999999999999998632 226778888999999999999999
Q ss_pred HHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHH-HHH
Q 005098 311 GLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP-LGL 389 (714)
Q Consensus 311 GLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~-l~l 389 (714)
+|+-+.-.... ...|...+.++ +.+++..|+-+||.+. .++. ..++..|.+ .+...|..+ -+|
T Consensus 675 aL~~l~~~~~~---~~~L~~~L~~~--d~~VR~~A~~aL~~~~--~~~~---~~l~~~L~D------~d~~VR~~Av~aL 738 (897)
T PRK13800 675 GLRELVEVLPP---APALRDHLGSP--DPVVRAAALDVLRALR--AGDA---ALFAAALGD------PDHRVRIEAVRAL 738 (897)
T ss_pred HHHHHHhccCc---hHHHHHHhcCC--CHHHHHHHHHHHHhhc--cCCH---HHHHHHhcC------CCHHHHHHHHHHH
Confidence 99875221111 24555566654 3466668888888764 3332 345554421 344455443 354
Q ss_pred hHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccc
Q 005098 390 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE 469 (714)
Q Consensus 390 gLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~ 469 (714)
+ .++.. +.++.. ..++++..|..++ .+++..|++....+..|++.+.+.. +.||..|+-+||-+...+
T Consensus 739 ~--~~~~~---~~l~~~-l~D~~~~VR~~aa--~aL~~~~~~~~~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~~- 806 (897)
T PRK13800 739 V--SVDDV---ESVAGA-ATDENREVRIAVA--KGLATLGAGGAPAGDAVRALTGDPD---PLVRAAALAALAELGCPP- 806 (897)
T ss_pred h--cccCc---HHHHHH-hcCCCHHHHHHHH--HHHHHhccccchhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCcc-
Confidence 4 44443 344443 4556777776554 4667778877766777887775432 389999999998885432
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHH
Q 005098 470 LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGML 549 (714)
Q Consensus 470 ~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~l 549 (714)
.+...+...+.+.++.||.+++-|||.+ +..++++.|.++++|++..||+.|+.|||-+ ..++.....|
T Consensus 807 ----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L 875 (897)
T PRK13800 807 ----DDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDAL 875 (897)
T ss_pred ----hhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHH
Confidence 2333344556778899999999999976 5678999999999999999999999999986 2355556666
Q ss_pred HHHHhhhccChhHHHHHHHHHh
Q 005098 550 RNLSSYYYKDANLLFCVRIAQG 571 (714)
Q Consensus 550 r~l~~~~~~d~~~~~~~~lA~G 571 (714)
.+..+ ..|+.++-.+..|++
T Consensus 876 ~~al~--D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 876 TTALT--DSDADVRAYARRALA 895 (897)
T ss_pred HHHHh--CCCHHHHHHHHHHHh
Confidence 65444 467788777777764
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.84 E-value=2.9e-07 Score=112.64 Aligned_cols=262 Identities=18% Similarity=0.111 Sum_probs=179.6
Q ss_pred cccchhHHHHHHHhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHH
Q 005098 228 KNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIG 307 (714)
Q Consensus 228 k~~~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~g 307 (714)
......|..|+.+||-+. + .+++..|...|.+++..+|..|+.+|+-+.... . ....|...|.++++.+|..
T Consensus 632 D~d~~VR~~Av~~L~~~~--~-~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT--P-PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---PAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred CCCHHHHHHHHHHHhhhc--c-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---chHHHHHHhcCCCHHHHHH
Confidence 344567888988888643 2 345667778888899999999999998773211 1 1234667788889999999
Q ss_pred HHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 005098 308 AIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 387 (714)
Q Consensus 308 A~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l 387 (714)
|+-.||....+. . ..|...+.|++ .+++..|+.+||-+ +. .+.++..+.+ . ...+++.++-
T Consensus 704 A~~aL~~~~~~~--~---~~l~~~L~D~d--~~VR~~Av~aL~~~--~~-----~~~l~~~l~D---~--~~~VR~~aa~ 764 (897)
T PRK13800 704 ALDVLRALRAGD--A---ALFAAALGDPD--HRVRIEAVRALVSV--DD-----VESVAGAATD---E--NREVRIAVAK 764 (897)
T ss_pred HHHHHHhhccCC--H---HHHHHHhcCCC--HHHHHHHHHHHhcc--cC-----cHHHHHHhcC---C--CHHHHHHHHH
Confidence 999999864432 2 35566777764 45666899999964 32 2344443321 1 2234444444
Q ss_pred HHhHhhcCChhh--HHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhh
Q 005098 388 GLGLLYLGKQES--VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA 465 (714)
Q Consensus 388 ~lgLi~lG~~e~--~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~ 465 (714)
+|..+|..+. .+.+.. +..++++..|..++.+++ ..|.. ...+..+++.+.++ + ..||+.|+-+|+.+.
T Consensus 765 --aL~~~~~~~~~~~~~L~~-ll~D~d~~VR~aA~~aLg--~~g~~-~~~~~~l~~aL~d~-d--~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 765 --GLATLGAGGAPAGDAVRA-LTGDPDPLVRAAALAALA--ELGCP-PDDVAAATAALRAS-A--WQVRQGAARALAGAA 835 (897)
T ss_pred --HHHHhccccchhHHHHHH-HhcCCCHHHHHHHHHHHH--hcCCc-chhHHHHHHHhcCC-C--hHHHHHHHHHHHhcc
Confidence 4556666553 455554 445567999987765543 33332 22345666766543 3 279999999999874
Q ss_pred cccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 005098 466 MAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 534 (714)
Q Consensus 466 ~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlG 534 (714)
. +.+...+..++.+.++.||..++.|||-+ .+++.+.+.|.+.++|.|.+||+.|..||.
T Consensus 836 --~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 836 --A----DVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred --c----cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2 23456666777889999999999999986 357889999999999999999999999886
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.21 E-value=0.0002 Score=80.04 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhcc-CCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 005098 272 LLGVGIVNCGIRNDCDPALALLSEYVG-REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLG 350 (714)
Q Consensus 272 llaLGli~~G~~~e~d~~~~lL~~~L~-~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLG 350 (714)
+-||.++ | . .++..|.+.+. +++..++..++++++- ..+..+++.|+..+.|.. ..+...++-+||
T Consensus 45 LdgL~~~--G--~---~a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~~--~~vr~aaa~ALg 111 (410)
T TIGR02270 45 VDGLVLA--G--K---AATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAGP--EGLCAGIQAALG 111 (410)
T ss_pred HHHHHHh--h--H---hHHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCCC--HHHHHHHHHHHh
Confidence 7777775 4 2 27788888884 5556666677777652 233455888888887642 335667888888
Q ss_pred hHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcC
Q 005098 351 LIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT 430 (714)
Q Consensus 351 Li~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGt 430 (714)
-+ ++.++...|+..|.+ .++..|.+++ +.+...+.+..+.++..|+ ++++..|..++-++ .+.|.
T Consensus 112 ~i----~~~~a~~~L~~~L~~------~~p~vR~aal--~al~~r~~~~~~~L~~~L~-d~d~~Vra~A~raL--G~l~~ 176 (410)
T TIGR02270 112 WL----GGRQAEPWLEPLLAA------SEPPGRAIGL--AALGAHRHDPGPALEAALT-HEDALVRAAALRAL--GELPR 176 (410)
T ss_pred cC----CchHHHHHHHHHhcC------CChHHHHHHH--HHHHhhccChHHHHHHHhc-CCCHHHHHHHHHHH--Hhhcc
Confidence 65 355677777776521 4455665554 2222233445566666665 56777776665543 44454
Q ss_pred CCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHH
Q 005098 431 GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNV 510 (714)
Q Consensus 431 Gn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~a 510 (714)
. ..+..|..... +.+ +.||++|+-+++.+ |.+ .+...+..+....++..+...+.++++. +..++
T Consensus 177 ~--~a~~~L~~al~-d~~--~~VR~aA~~al~~l--G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~~a 241 (410)
T TIGR02270 177 R--LSESTLRLYLR-DSD--PEVRFAALEAGLLA--GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGPDA 241 (410)
T ss_pred c--cchHHHHHHHc-CCC--HHHHHHHHHHHHHc--CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----CchhH
Confidence 4 44445555543 333 27888888888776 333 2333444422333445555555555554 66688
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 511 MDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 511 i~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
++.|..+++|+. ||..++.|+|.++
T Consensus 242 ~~~L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 242 QAWLRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHhcChh--hHHHHHHHHHHcC
Confidence 888888888865 8888888888773
No 16
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.20 E-value=0.00042 Score=75.29 Aligned_cols=214 Identities=19% Similarity=0.216 Sum_probs=131.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHH
Q 005098 290 LALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFAL 369 (714)
Q Consensus 290 ~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L 369 (714)
...+...+.+++..+|..+...+|. ...++.+..|...+.|.+. .++..|+.+||-+ ++++.+..++..+
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~----~~~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~----~~~~a~~~li~~l 114 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGE----LGSEEAVPLLRELLSDEDP--RVRDAAADALGEL----GDPEAVPPLVELL 114 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh----hchHHHHHHHHHHhcCCCH--HHHHHHHHHHHcc----CChhHHHHHHHHH
Confidence 3444555555566666666666554 2345666666666665432 3444566666633 3556666666655
Q ss_pred hhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhch---------hh--hhhhhHHHHHHHHhhcCCCHHHHHH
Q 005098 370 MDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN---------EK--IRKYCDMTLLSCAYAGTGNVLKVQN 438 (714)
Q Consensus 370 ~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~---------~~--~~r~~~~~~~glayaGtGn~~~i~~ 438 (714)
.. + .+.++|..+ +.+|..+|.+..+..+++.+.... .+ ..|..+..+ ....|+...+..
T Consensus 115 ~~----d-~~~~vR~~a-a~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~----l~~~~~~~~~~~ 184 (335)
T COG1413 115 EN----D-ENEGVRAAA-ARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA----LGELGDPEAIPL 184 (335)
T ss_pred Hc----C-CcHhHHHHH-HHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH----HHHcCChhhhHH
Confidence 32 1 223333322 344445666666666666655433 11 123333222 224566666777
Q ss_pred HHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhh
Q 005098 439 LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS 518 (714)
Q Consensus 439 LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~ 518 (714)
+...+.+... ++|+.+..+++.+..... .+...+....++.+..+|..++.++|-. +..++.+.|....
T Consensus 185 l~~~l~~~~~---~vr~~Aa~aL~~~~~~~~----~~~~~l~~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l 253 (335)
T COG1413 185 LIELLEDEDA---DVRRAAASALGQLGSENV----EAADLLVKALSDESLEVRKAALLALGEI----GDEEAVDALAKAL 253 (335)
T ss_pred HHHHHhCchH---HHHHHHHHHHHHhhcchh----hHHHHHHHHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHH
Confidence 7777654433 788899999888876652 3444555666778889999999999987 7788888888888
Q ss_pred cCCchHHHHHHHHHHH
Q 005098 519 HDTDSEVAMAAVISLG 534 (714)
Q Consensus 519 ~D~~~~Vr~~AiiAlG 534 (714)
.+.+..++..+..+++
T Consensus 254 ~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 254 EDEDVILALLAAAALG 269 (335)
T ss_pred hccchHHHHHHHHHhc
Confidence 8888888887777776
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.18 E-value=0.00015 Score=80.92 Aligned_cols=247 Identities=17% Similarity=0.093 Sum_probs=154.0
Q ss_pred hhhhcccchhhHHhhhhhcc-CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Q 005098 242 GMILLWDVDSGLAQIDKYFH-STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 320 (714)
Q Consensus 242 GlI~~~~~~~~l~~l~~yL~-s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 320 (714)
|+.-.| ..++..+.+-|. .++..++..+.+++. .+ +...+++.|...+.+.++.++.+++-+||-+ +
T Consensus 47 gL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~---~~---~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----~ 114 (410)
T TIGR02270 47 GLVLAG--KAATELLVSALAEADEPGRVACAALALL---AQ---EDALDLRSVLAVLQAGPEGLCAGIQAALGWL----G 114 (410)
T ss_pred HHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHh---cc---CChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C
Confidence 444445 457777777774 455566665555554 12 2222478888889888888999999999863 4
Q ss_pred CHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH
Q 005098 321 NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 321 ~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~ 400 (714)
+++....|.+.+.+.+. .+..++.-++|.- + .+..+.++..|.+ .++..|..++ -+|.++|+.+..
T Consensus 115 ~~~a~~~L~~~L~~~~p--~vR~aal~al~~r--~---~~~~~~L~~~L~d------~d~~Vra~A~-raLG~l~~~~a~ 180 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEP--PGRAIGLAALGAH--R---HDPGPALEAALTH------EDALVRAAAL-RALGELPRRLSE 180 (410)
T ss_pred chHHHHHHHHHhcCCCh--HHHHHHHHHHHhh--c---cChHHHHHHHhcC------CCHHHHHHHH-HHHHhhccccch
Confidence 56788888888875533 3333444455542 2 2345666665531 3445554443 234477787777
Q ss_pred HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHH
Q 005098 401 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 480 (714)
Q Consensus 401 ~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~ 480 (714)
..+... ....++..|.+++.++ +..|+ ..++.-++.+..+.-. ..++.+...+++. +. ..+...+.
T Consensus 181 ~~L~~a-l~d~~~~VR~aA~~al--~~lG~--~~A~~~l~~~~~~~g~---~~~~~l~~~lal~--~~----~~a~~~L~ 246 (410)
T TIGR02270 181 STLRLY-LRDSDPEVRFAALEAG--LLAGS--RLAWGVCRRFQVLEGG---PHRQRLLVLLAVA--GG----PDAQAWLR 246 (410)
T ss_pred HHHHHH-HcCCCHHHHHHHHHHH--HHcCC--HhHHHHHHHHHhccCc---cHHHHHHHHHHhC--Cc----hhHHHHHH
Confidence 776644 4556888888777654 33454 6666666663332211 3433444444444 44 34555566
Q ss_pred HHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 005098 481 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 536 (714)
Q Consensus 481 ~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV 536 (714)
.++++ +.+|..+..|+|.+ ++++++..|...+.|.. +++.|--|+..|
T Consensus 247 ~ll~d--~~vr~~a~~AlG~l----g~p~av~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 247 ELLQA--AATRREALRAVGLV----GDVEAAPWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HHhcC--hhhHHHHHHHHHHc----CCcchHHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 66664 46999999999987 78888998888887665 888887777766
No 18
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.83 E-value=2.4e-05 Score=56.26 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=30.9
Q ss_pred hHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHH
Q 005098 493 AVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 527 (714)
Q Consensus 493 g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~ 527 (714)
|++++||++|||+++.++++.|.++++|.+.+++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 68999999999999999999999999999998875
No 19
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.76 E-value=0.012 Score=63.86 Aligned_cols=255 Identities=22% Similarity=0.218 Sum_probs=173.7
Q ss_pred hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhh
Q 005098 252 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI 331 (714)
Q Consensus 252 ~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~ 331 (714)
....+.+++.+.+..+|.+|...+|.+.. ..++..|...+.+.+..+|..|+.+||- .+++.....|.+.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~~~li~~ 113 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGE----LGDPEAVPPLVEL 113 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHHHHHHHH
Confidence 34456666777789999999999887632 2378889999999999999999998885 3457788888888
Q ss_pred hc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCc------cccCchhHhHHHHHHhHhhcCChhhHHHHH
Q 005098 332 LN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE------SELGEPLTRLIPLGLGLLYLGKQESVEATA 404 (714)
Q Consensus 332 l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~------~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll 404 (714)
+. |. +.-++..|+.+||-+ ++...+..++..+.+... -.......|.. ..-+|..+|.++....++
T Consensus 114 l~~d~--~~~vR~~aa~aL~~~----~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~-a~~~l~~~~~~~~~~~l~ 186 (335)
T COG1413 114 LENDE--NEGVRAAAARALGKL----GDERALDPLLEALQDEDSGSAAAALDAALLDVRAA-AAEALGELGDPEAIPLLI 186 (335)
T ss_pred HHcCC--cHhHHHHHHHHHHhc----CchhhhHHHHHHhccchhhhhhhhccchHHHHHHH-HHHHHHHcCChhhhHHHH
Confidence 87 44 334556889999965 355567777776543210 00011123433 355677888999988888
Q ss_pred HHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHh
Q 005098 405 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 484 (714)
Q Consensus 405 ~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~ 484 (714)
+.+... +...|..++.+ +...|..+...+..+..... +.+. .+|..++.++|-+...+ ....+-....
T Consensus 187 ~~l~~~-~~~vr~~Aa~a--L~~~~~~~~~~~~~l~~~~~-~~~~--~vr~~~~~~l~~~~~~~------~~~~l~~~l~ 254 (335)
T COG1413 187 ELLEDE-DADVRRAAASA--LGQLGSENVEAADLLVKALS-DESL--EVRKAALLALGEIGDEE------AVDALAKALE 254 (335)
T ss_pred HHHhCc-hHHHHHHHHHH--HHHhhcchhhHHHHHHHHhc-CCCH--HHHHHHHHHhcccCcch------hHHHHHHHHh
Confidence 877754 34666655544 44445555455555555554 3332 78888999888876544 4455666667
Q ss_pred cCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 485 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 485 ~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
+.++.++.....+++ +..-....-.+.....|.+..++..+..+++.+..+
T Consensus 255 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 255 DEDVILALLAAAALG----ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred ccchHHHHHHHHHhc----ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence 888888888888887 334555566677888888888998888888887544
No 20
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0037 Score=64.51 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHh-cCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 473 EMAIRSLEHLLQ-YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 473 ~~~~~~l~~L~~-~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
..++.+...|.. .-+|-||.-++.|||-+ ++.++++.|..+++|+++-||..+.+|+-+.---
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaI----a~e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAI----ADEDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhh----cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 345555555543 34689999999999988 8999999999999999999999999999887543
No 21
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.68 E-value=4.3e-05 Score=54.96 Aligned_cols=30 Identities=43% Similarity=0.802 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHhhhcCCC
Q 005098 307 GAIMGLGISYAGTQNDQIRHKLSTILNDAK 336 (714)
Q Consensus 307 gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~ 336 (714)
||++|||++|+||+++++++.|.|.+.|++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~ 30 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTS 30 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSS
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 689999999999999999999999998764
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00047 Score=59.33 Aligned_cols=85 Identities=27% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhc
Q 005098 478 SLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYY 557 (714)
Q Consensus 478 ~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~ 557 (714)
+++.|..+.++.+|..++.+||-. +++++++.|.++++|++..||+.|+.++|-++ +++....|.++... .
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~-~ 74 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQD-D 74 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC--
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcC-C
Confidence 344444555666666666666633 45566666666666666666666666666552 33333444442221 2
Q ss_pred cChhHHHHHHHHHh
Q 005098 558 KDANLLFCVRIAQG 571 (714)
Q Consensus 558 ~d~~~~~~~~lA~G 571 (714)
.+..++..+.-|+|
T Consensus 75 ~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 DDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcC
Confidence 23344555544443
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.44 E-value=0.00044 Score=59.55 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=63.5
Q ss_pred HHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHH
Q 005098 437 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 516 (714)
Q Consensus 437 ~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~ 516 (714)
..|++.+.++.++ .+|..++-.+|-+ ++ +.+...+..++++.+|.||..++.+||-+ |+.++++.|.+
T Consensus 2 ~~L~~~l~~~~~~--~vr~~a~~~L~~~--~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDP--QVRAEAARALGEL--GD----PEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSH--HHHHHHHHHHHCC--TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHHHHHH
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHc--CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHH
Confidence 4566666444443 7888888877733 33 44555555566889999999999999987 57889999998
Q ss_pred hhcC-CchHHHHHHHHHHH
Q 005098 517 LSHD-TDSEVAMAAVISLG 534 (714)
Q Consensus 517 l~~D-~~~~Vr~~AiiAlG 534 (714)
++.| .+..||..|+-|||
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 7755 56678999998886
No 24
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.033 Score=63.22 Aligned_cols=241 Identities=17% Similarity=0.192 Sum_probs=160.1
Q ss_pred HHHHHhcc-CCChHHHHHHHHHHHHHhccCCCH-------hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCH---
Q 005098 291 ALLSEYVG-REDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE--- 359 (714)
Q Consensus 291 ~lL~~~L~-~~~~~v~~gA~lGLGl~y~Gs~~~-------~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~--- 359 (714)
..|.+.+. +.++.+|..|+-+|--+..||... ..+-.+...+.++ +.+++..|..|||-|- |.+..
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~--~~~v~eQavWALgNIa-gds~~~Rd 188 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP--SADVREQAVWALGNIA-GDSPDCRD 188 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC--cHHHHHHHHHHHhccc-cCChHHHH
Confidence 33455554 455788999999998888887633 2344455555554 4456668999999874 55421
Q ss_pred -----HHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh-----hhHHHHHHH---HhhchhhhhhhhHHHHHHHH
Q 005098 360 -----EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-----ESVEATAEV---SKTFNEKIRKYCDMTLLSCA 426 (714)
Q Consensus 360 -----~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~-----e~~~~ll~~---L~~~~~~~~r~~~~~~~gla 426 (714)
.+++.|+..+.. .. .....|-+.-.+.-++=|+. +.+..++.. |....|+-...-++++ ++
T Consensus 189 ~vl~~g~l~pLl~~l~~---~~-~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA--ls 262 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNK---SD-KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA--LS 262 (514)
T ss_pred HHHhhcchHHHHHHhcc---cc-chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HH
Confidence 234555554421 11 23577888888888888885 445554443 3445566665555554 67
Q ss_pred hhcCCCHHHHHHHHhhc--------cccCCCCccccchhHHHHHHhhcccchhhhh-----HHHHHHHHHh-cCCHHHHh
Q 005098 427 YAGTGNVLKVQNLLGHC--------AQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQ-YGEQNIRR 492 (714)
Q Consensus 427 yaGtGn~~~i~~LL~~~--------~~~~~~~~~vrr~avl~lalI~~~~~~~~~~-----~~~~l~~L~~-~~~~~vr~ 492 (714)
|.--|..+.+|.++... -.+.+. .++-.|+-++|-|..|++.-.+. +...+..|+. ++..+||.
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk 340 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK 340 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence 87777777777543222 133332 67888999999999999832222 2233445554 66778999
Q ss_pred hHHHHHhhhccCCC-------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 493 AVPLALGLLCISNP-------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 493 g~~lALGl~~aGt~-------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
-+|+.+.=+.|||. +..++..|.++++..+-..|.-|..|++-..+|.+.
T Consensus 341 EAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 341 EACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 99999999999996 334456677778888888999999999988887664
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.86 E-value=0.29 Score=64.06 Aligned_cols=278 Identities=14% Similarity=0.082 Sum_probs=167.6
Q ss_pred hhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChh-----hHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH---
Q 005098 251 SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQND--- 322 (714)
Q Consensus 251 ~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~--- 322 (714)
++...|-..|...+...+.-+..+|..+..|...... ..+..|.+.|.+++...|..|+..||.+..|+.+.
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555666777788888888888777655211100 14567888888888889999999999987766431
Q ss_pred ----hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC-HH------HHHHHHHHHhhcCccccCchhHhHHHHHHh-
Q 005098 323 ----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-EE------VAQAIIFALMDRSESELGEPLTRLIPLGLG- 390 (714)
Q Consensus 323 ----~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~-~~------~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lg- 390 (714)
..+..|.+.|..+ +.+++.-|+.+||-+-..+.+ .. ++..|++.|... ..+..+-++-+|.
T Consensus 484 IieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-----d~~~q~~Aa~AL~n 556 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-----GPKGQEIAAKTLTK 556 (2102)
T ss_pred HHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHH
Confidence 2355677777643 234555788899976543321 11 233455554321 2234444554553
Q ss_pred HhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHH-hhcCCC---------HHHHHHHHhhccccCCCCccccchhHHH
Q 005098 391 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCA-YAGTGN---------VLKVQNLLGHCAQHHEKGEAYQGPAVLG 460 (714)
Q Consensus 391 Li~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~gla-yaGtGn---------~~~i~~LL~~~~~~~~~~~~vrr~avl~ 460 (714)
|+.-|..+....+++.|...+.....+ ..-++|.. -.+.++ ...+..|.+...+. ++ .+++-|+-.
T Consensus 557 Li~~~d~~~I~~Lv~LLlsdd~~~~~~-aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~--~ikk~Aa~i 632 (2102)
T PLN03200 557 LVRTADAATISQLTALLLGDLPESKVH-VLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KE--ETQEKAASV 632 (2102)
T ss_pred HHhccchhHHHHHHHHhcCCChhHHHH-HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CH--HHHHHHHHH
Confidence 334456666666666655433222222 12222211 112221 23455566665433 32 788888888
Q ss_pred HHHhhcccchh------hhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHH--------HHHHHHHhhcCCchHHH
Q 005098 461 IAMVAMAEELG------LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVN--------VMDTLSRLSHDTDSEVA 526 (714)
Q Consensus 461 lalI~~~~~~~------~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~--------ai~~L~~l~~D~~~~Vr 526 (714)
|+-++.+++-- .+.++.++.. ++.++..++..++.||+-++.+....+ ++..|-.++++++..++
T Consensus 633 LsnL~a~~~d~~~avv~agaIpPLV~L-Lss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 633 LADIFSSRQDLCESLATDEIINPCIKL-LTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHH-HhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence 88888777511 1224555544 467888999999999997775433221 24567788899999999
Q ss_pred HHHHHHHHHHcCCC
Q 005098 527 MAAVISLGLIGSGT 540 (714)
Q Consensus 527 ~~AiiAlGlV~aGt 540 (714)
..|.-|++.+....
T Consensus 712 e~Al~ALanLl~~~ 725 (2102)
T PLN03200 712 EQAVCALANLLSDP 725 (2102)
T ss_pred HHHHHHHHHHHcCc
Confidence 99999998877644
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=96.77 E-value=0.52 Score=56.81 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=55.7
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC----HhHHHHHHhh
Q 005098 256 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN----DQIRHKLSTI 331 (714)
Q Consensus 256 l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~----~~i~e~L~~~ 331 (714)
+.+-+.++++.+|+-|+-.+|.+..- .-.+.+...+...+.+++++||-.|++++.-+|.-..+ .+..+.|...
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L 187 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL 187 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH
Confidence 44556678899999999988876431 11123444556667788999999999999999875442 2456777777
Q ss_pred hcCCCC
Q 005098 332 LNDAKS 337 (714)
Q Consensus 332 l~d~~~ 337 (714)
+.|++.
T Consensus 188 L~D~dp 193 (746)
T PTZ00429 188 LNDNNP 193 (746)
T ss_pred hcCCCc
Confidence 777643
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=1.4 Score=54.05 Aligned_cols=118 Identities=16% Similarity=0.290 Sum_probs=76.0
Q ss_pred hhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCCh----hhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC------
Q 005098 251 SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC----DPALALLSEYVGREDACIRIGAIMGLGISYAGTQ------ 320 (714)
Q Consensus 251 ~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~----d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~------ 320 (714)
..++.+..++.|++-.-|..|++|+|.+.-|..+-+ |+++....+.|.++++.||.+|+.++|-....-+
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 345667777889999999999999999998865433 3455666677889999999999999998654432
Q ss_pred -CHhHHHHHHhhhcCCCChhHHHHHHHH-HHHhHhcCCCCHHHHHHHHHHHhh
Q 005098 321 -NDQIRHKLSTILNDAKSPLDVIAFSAI-SLGLIYVGSCNEEVAQAIIFALMD 371 (714)
Q Consensus 321 -~~~i~e~L~~~l~d~~~~~e~~~~Aal-aLGLi~lGs~~~~~~e~Ll~~L~~ 371 (714)
++.+...|...+.|+ .+.+++..|+- .++ |.--+..++++.-|.-+++
T Consensus 428 ~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~n--f~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 428 HHERLPPALIALLDST-QNVRVQAHAAAALVN--FSEECDKSILEPYLDGLME 477 (1075)
T ss_pred HHHhccHHHHHHhccc-CchHHHHHHHHHHHH--HHHhCcHHHHHHHHHHHHH
Confidence 222333444444444 34455333433 333 2334455555555554444
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.64 E-value=0.15 Score=58.66 Aligned_cols=268 Identities=16% Similarity=0.162 Sum_probs=147.9
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH--h-HHHHHHhhh
Q 005098 256 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND--Q-IRHKLSTIL 332 (714)
Q Consensus 256 l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~--~-i~e~L~~~l 332 (714)
+.+-+.++++++++-|+=.++-+..- .-.+++...+...+.++++.+|..|++++.-+|-...+. + +.+.|...+
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL 161 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLL 161 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhc
Confidence 44557788999999999999988531 111234455666778899999999999999998764432 3 567777777
Q ss_pred cCCCChhHHHHHHHHHHHhHhcCCCCHHH----HHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh--hhH--HHHH
Q 005098 333 NDAKSPLDVIAFSAISLGLIYVGSCNEEV----AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--ESV--EATA 404 (714)
Q Consensus 333 ~d~~~~~e~~~~AalaLGLi~lGs~~~~~----~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~--e~~--~~ll 404 (714)
.|++ ..+..+|..++.-+ ..+++. ...+...|...- .. .++|.+...+-+ |..+.+. +.. ..++
T Consensus 162 ~d~~--~~V~~~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~q~~il~~-l~~~~~~~~~~~~~~~~i 233 (526)
T PF01602_consen 162 SDKD--PSVVSAALSLLSEI---KCNDDSYKSLIPKLIRILCQLL-SD-PDPWLQIKILRL-LRRYAPMEPEDADKNRII 233 (526)
T ss_dssp THSS--HHHHHHHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHH-TC-CSHHHHHHHHHH-HTTSTSSSHHHHHHHHHH
T ss_pred cCCc--chhHHHHHHHHHHH---ccCcchhhhhHHHHHHHhhhcc-cc-cchHHHHHHHHH-HHhcccCChhhhhHHHHH
Confidence 6654 44554566666655 344443 333333332110 11 456665444322 2233332 223 2344
Q ss_pred HHHhh---chhhhhhhhHHHHHHHHhhcCCC--HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHH
Q 005098 405 EVSKT---FNEKIRKYCDMTLLSCAYAGTGN--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 479 (714)
Q Consensus 405 ~~L~~---~~~~~~r~~~~~~~glayaGtGn--~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l 479 (714)
+.+.. ...+-..+.++-+. +.+...-. ..+++.|.+++.+. + +++|-.++-.+..+....+..-....-.+
T Consensus 234 ~~l~~~l~s~~~~V~~e~~~~i-~~l~~~~~~~~~~~~~L~~lL~s~-~--~nvr~~~L~~L~~l~~~~~~~v~~~~~~~ 309 (526)
T PF01602_consen 234 EPLLNLLQSSSPSVVYEAIRLI-IKLSPSPELLQKAINPLIKLLSSS-D--PNVRYIALDSLSQLAQSNPPAVFNQSLIL 309 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHSSSHHHHHHHHHHHHHHHTSS-S--HHHHHHHHHHHHHHCCHCHHHHGTHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHH-HHhhcchHHHHhhHHHHHHHhhcc-c--chhehhHHHHHHHhhcccchhhhhhhhhh
Confidence 43332 22333333322221 11112111 24566677777632 2 26777777778888776631111111112
Q ss_pred HHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCC-chHHHHHHHHHHHHHc
Q 005098 480 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT-DSEVAMAAVISLGLIG 537 (714)
Q Consensus 480 ~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~-~~~Vr~~AiiAlGlV~ 537 (714)
..+..+.++.||.-+.-.+--++--++-..+++.|.+++++. +.+++..++-+++-+.
T Consensus 310 ~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 310 FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 233336788888876666665554445566778888888555 6668877777776554
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.63 E-value=0.15 Score=58.78 Aligned_cols=284 Identities=18% Similarity=0.095 Sum_probs=151.1
Q ss_pred cchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhh---HHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhH
Q 005098 248 DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP---ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQI 324 (714)
Q Consensus 248 ~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~---~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i 324 (714)
+++.++..+-+++.+++...|--+.+++..+.... .|. +.+.|..-+.++++.+|.-|+-.|+-+. .+++
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~ 111 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEM 111 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHH
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccch
Confidence 45555555666677777777777778888775532 221 2345556678889999988888888753 5667
Q ss_pred HHHHHhhh----cCCCChhHHHHHHHHHHHhHhcCCCCH--H-HHHHHHHHHhhcCccccCchhHhHHHH-HHhHhhcCC
Q 005098 325 RHKLSTIL----NDAKSPLDVIAFSAISLGLIYVGSCNE--E-VAQAIIFALMDRSESELGEPLTRLIPL-GLGLLYLGK 396 (714)
Q Consensus 325 ~e~L~~~l----~d~~~~~e~~~~AalaLGLi~lGs~~~--~-~~e~Ll~~L~~~~~~~l~~~~~r~a~l-~lgLi~lG~ 396 (714)
.+.+.|.+ .|+ +..++..|++++.-+|--..+. . ..+.+.+.|.+ .++.++.+++ .+.-+ -..
T Consensus 112 ~~~l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d------~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 112 AEPLIPDVIKLLSDP--SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD------KDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH------SSHHHHHHHHHHHHHH-HCT
T ss_pred hhHHHHHHHHHhcCC--chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC------CcchhHHHHHHHHHHH-ccC
Confidence 77666554 454 3467778999999988653321 1 23333333211 3344444443 22222 011
Q ss_pred h----hhHHHHHHHHh---hchhhhhhhhHHHHHHHHhhcCCCHHH------HHHHHhhccccCCCCccccchhHHHHHH
Q 005098 397 Q----ESVEATAEVSK---TFNEKIRKYCDMTLLSCAYAGTGNVLK------VQNLLGHCAQHHEKGEAYQGPAVLGIAM 463 (714)
Q Consensus 397 ~----e~~~~ll~~L~---~~~~~~~r~~~~~~~glayaGtGn~~~------i~~LL~~~~~~~~~~~~vrr~avl~lal 463 (714)
+ .....++..|. ...+|+.+... ...+......+... ++.++....+. + +.|.-.++-.+.-
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~i--l~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~-~--~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKI--LRLLRRYAPMEPEDADKNRIIEPLLNLLQSS-S--PSVVYEAIRLIIK 257 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHH--HHHHTTSTSSSHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHH--HHHHHhcccCChhhhhHHHHHHHHHHHhhcc-c--cHHHHHHHHHHHH
Confidence 1 22444555554 34555554322 22222333333222 23333333211 1 1333333333332
Q ss_pred hhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCC-CcHHHHHH-HHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 005098 464 VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN-PKVNVMDT-LSRLSHDTDSEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 464 I~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt-~~~~ai~~-L~~l~~D~~~~Vr~~AiiAlGlV~aGt~ 541 (714)
+....+ -...+...+..++.+.++++|+.+.-++..+..-+ +...-... +..+..|.+..+|..|+--+..+. +
T Consensus 258 l~~~~~-~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~---~ 333 (526)
T PF01602_consen 258 LSPSPE-LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA---N 333 (526)
T ss_dssp HSSSHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-----
T ss_pred hhcchH-HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcc---c
Confidence 222222 12345556667778899999999999988887655 11111112 223344888999986655444442 3
Q ss_pred chHHHHHHHHHHhhh
Q 005098 542 NARIAGMLRNLSSYY 556 (714)
Q Consensus 542 n~rv~~~lr~l~~~~ 556 (714)
+..+..++..|.+|.
T Consensus 334 ~~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 334 ESNVKEILDELLKYL 348 (526)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHH
Confidence 444566777777776
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.49 E-value=0.48 Score=62.17 Aligned_cols=268 Identities=16% Similarity=0.098 Sum_probs=161.6
Q ss_pred chhHHHHHHHhhhhhcccch--------hhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChh------hHHHHHHHh
Q 005098 231 EHGKMSAAASLGMILLWDVD--------SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD------PALALLSEY 296 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~~--------~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d------~~~~lL~~~ 296 (714)
...+-.|+..+|.+-.++-+ .++..|-+.|.+++..++--|+-+||-+..+. .+.. .++..|.+.
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHH
Confidence 33444556667766555432 34566677787888888889999999775532 1110 134556677
Q ss_pred ccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHh-cCCCCH---------HHHHHHH
Q 005098 297 VGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIY-VGSCNE---------EVAQAII 366 (714)
Q Consensus 297 L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~-lGs~~~---------~~~e~Ll 366 (714)
|.+.+..++.-|+-+|.-.-.+. +.+....|...+..++.... ..+.-++|-+. ++.+++ ..++.|.
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~~~--~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv 615 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPESK--VHVLDVLGHVLSVASLEDLVREGSAANDALRTLI 615 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChhHH--HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHH
Confidence 77777788888888888775543 44555666666653322222 23455666653 233321 2445555
Q ss_pred HHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH---------HHHHHHhhchhhhhhhhHHHHHHHHhh-cCCCH--H
Q 005098 367 FALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE---------ATAEVSKTFNEKIRKYCDMTLLSCAYA-GTGNV--L 434 (714)
Q Consensus 367 ~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~---------~ll~~L~~~~~~~~r~~~~~~~glaya-GtGn~--~ 434 (714)
+.+. +. ++...+-++-.++=++-|+++..+ .+++.|..-+..+.+. ++++++-.+- |+.+. .
T Consensus 616 ~LL~----sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~ke-AA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 616 QLLS----SS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ-SARALAALSRSIKENRKVS 689 (2102)
T ss_pred HHHc----CC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHH-HHHHHHHHHhCCCHHHHHH
Confidence 5442 12 456667777788888888877544 4556666555555444 5555554432 22221 1
Q ss_pred -----HHHHHHhhccccCCCCccccchhHHHHHHhhcccch----hhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCC
Q 005098 435 -----KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL----GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN 505 (714)
Q Consensus 435 -----~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~----~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt 505 (714)
+|..|...+.+. + .+++..++-+++.++...+. +.+-+...+-.+++.+++..|..++.||.-+|-+.
T Consensus 690 ~v~~GaV~pL~~LL~~~-d--~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSS-S--IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHcCCHHHHHHHHhCC-C--hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 233456666443 2 27888899999998876542 22223344556678999999999999999998777
Q ss_pred CcHHHH
Q 005098 506 PKVNVM 511 (714)
Q Consensus 506 ~~~~ai 511 (714)
+..+++
T Consensus 767 ~~~~~~ 772 (2102)
T PLN03200 767 PVDDVL 772 (2102)
T ss_pred ChhHHH
Confidence 655533
No 31
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.67 E-value=0.48 Score=49.36 Aligned_cols=236 Identities=17% Similarity=0.155 Sum_probs=124.1
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHH
Q 005098 290 LALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFAL 369 (714)
Q Consensus 290 ~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L 369 (714)
++.+.+...+++...++-.++.||= .++++.++.|...+.|.+..+-+++-|+.+||-++ ..+..+.+-.+.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ----~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----~~~~~~~l~k~~ 109 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ----MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----DPESLEILTKYI 109 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh----hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----chhhHHHHHHHh
Confidence 4445555555556666666666653 34566777777777665544455666777777653 334444444432
Q ss_pred hhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHh-hchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCC
Q 005098 370 MDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSK-TFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE 448 (714)
Q Consensus 370 ~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~-~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~ 448 (714)
+.+ .-++...+-+|+. .+...+..+...+... ...||-.+ +.++++..++..|-- ...
T Consensus 110 -~dp----~~~v~ETc~lAi~--rle~~~~~~~~~~~~p~~SvdPa~p-----------~~~ssv~~lr~~lld---~t~ 168 (289)
T KOG0567|consen 110 -KDP----CKEVRETCELAIK--RLEWKDIIDKIANSSPYISVDPAPP-----------ANLSSVHELRAELLD---ETK 168 (289)
T ss_pred -cCC----ccccchHHHHHHH--HHHHhhccccccccCccccCCCCCc-----------cccccHHHHHHHHHh---cch
Confidence 111 1122222322322 2211111111000000 00122111 234444433333221 111
Q ss_pred CCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCC--chHHH
Q 005098 449 KGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT--DSEVA 526 (714)
Q Consensus 449 ~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~--~~~Vr 526 (714)
+ .+.|.. ++-..++--|.+.+..+.+.+. ...+-.|.-+++.+|.+ ..+.+|..|.+-+.|. ...||
T Consensus 169 ~--l~~Ry~----amF~LRn~g~EeaI~al~~~l~-~~SalfrhEvAfVfGQl----~s~~ai~~L~k~L~d~~E~pMVR 237 (289)
T KOG0567|consen 169 P--LFERYR----AMFYLRNIGTEEAINALIDGLA-DDSALFRHEVAFVFGQL----QSPAAIPSLIKVLLDETEHPMVR 237 (289)
T ss_pred h--HHHHHh----hhhHhhccCcHHHHHHHHHhcc-cchHHHHHHHHHHHhhc----cchhhhHHHHHHHHhhhcchHHH
Confidence 1 344431 2222233222366777776664 34789999999999999 7788888888888775 46799
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHhhhccCh--hHHHHHHHHHhhh
Q 005098 527 MAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDA--NLLFCVRIAQGLV 573 (714)
Q Consensus 527 ~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~--~~~~~~~lA~Gll 573 (714)
.-|..|||.+ .+....++|.+ | .+|+ .++-.+..|+-+.
T Consensus 238 hEaAeALGaI----a~e~~~~vL~e---~-~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 238 HEAAEALGAI----ADEDCVEVLKE---Y-LGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHhh----cCHHHHHHHHH---H-cCCcHHHHHHHHHHHHHHH
Confidence 9999999998 34455566666 2 3443 4666666666554
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.66 E-value=7.1 Score=46.93 Aligned_cols=251 Identities=14% Similarity=0.077 Sum_probs=118.0
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 322 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~ 322 (714)
....|+.+++...+.+.+....... .+...+|.++... .+.+.+...+...+....... .+...++.++.-.++.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVM-KNYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCH
Confidence 3456788888887776654322222 3444455554322 123446666666654322211 2334455555544443
Q ss_pred h-HHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 323 Q-IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 323 ~-i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
+ ..+.+...........+ .-..+|.++...++-+-+...+.......++ . .....++..+...|+.+++.
T Consensus 686 ~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAAL----GFELEGDLYLRQKDYPAAIQAYRKALKRAPS---S--QNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHHHHHHHHHhhCcCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---c--hHHHHHHHHHHHCCCHHHHH
Confidence 3 33333332221111112 3345666776677665555555444332221 1 12334455666677777766
Q ss_pred HHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHH
Q 005098 402 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 481 (714)
Q Consensus 402 ~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~ 481 (714)
..++......... ......+|..|...|+.....+.++.+.+...+ +. .+...+|.+...... ..+...++.
T Consensus 757 ~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~--~~~~~l~~~~~~~~~--~~A~~~~~~ 828 (899)
T TIGR02917 757 KTLEAWLKTHPND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD--NA--VVLNNLAWLYLELKD--PRALEYAEK 828 (899)
T ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CH--HHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 6665544322111 123455677788888865555544444322111 22 233344444433321 235555555
Q ss_pred HHhc--CCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhhc
Q 005098 482 LLQY--GEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLSH 519 (714)
Q Consensus 482 L~~~--~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~~ 519 (714)
.... .++... ..+|.++...+ -.+|+..+.+...
T Consensus 829 ~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 829 ALKLAPNIPAIL----DTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHhhCCCCcHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4432 233332 23344443333 3457777777753
No 33
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.5 Score=50.72 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=155.0
Q ss_pred HHhc-cCCChHHHHHHHHHHHHHhccCCCH-------hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCH------
Q 005098 294 SEYV-GREDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE------ 359 (714)
Q Consensus 294 ~~~L-~~~~~~v~~gA~lGLGl~y~Gs~~~-------~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~------ 359 (714)
.+++ +......+..|.-+|--+..||.+. ..+..+.+.|.+++ .++.-.|..|||-|. |-...
T Consensus 120 vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~--~~V~eQavWALGNiA-GDS~~~RD~vL 196 (526)
T COG5064 120 VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE--DDVREQAVWALGNIA-GDSEGCRDYVL 196 (526)
T ss_pred HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch--HHHHHHHHHHhcccc-CCchhHHHHHH
Confidence 3444 3455678888999988888888754 45677777777653 344446888999774 32210
Q ss_pred --HHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh--------hHHHHHHHHhhchhhhhhhhHHHHHHHHhhc
Q 005098 360 --EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAG 429 (714)
Q Consensus 360 --~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e--------~~~~ll~~L~~~~~~~~r~~~~~~~glayaG 429 (714)
-+.+.+|..+.+ +..|-+..|-+.--|+=++=|+.- ++-.++..|....|+-.-.-++++ +.|..
T Consensus 197 ~~galeplL~ll~s---s~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WA--iSYls 271 (526)
T COG5064 197 QCGALEPLLGLLLS---SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA--ISYLS 271 (526)
T ss_pred hcCchHHHHHHHHh---ccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHH--HHHhc
Confidence 134555555442 112446667776666666666532 333445555555566555556665 67888
Q ss_pred CCCHHHHHHHHhhcc--------ccCCCCccccchhHHHHHHhhcccchhhhh-----HHHHHHHHHhcCCHHHHhhHHH
Q 005098 430 TGNVLKVQNLLGHCA--------QHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPL 496 (714)
Q Consensus 430 tGn~~~i~~LL~~~~--------~~~~~~~~vrr~avl~lalI~~~~~~~~~~-----~~~~l~~L~~~~~~~vr~g~~l 496 (714)
-|..++++..+...- ++.+ ..++.-++-++|-|..|++...+. +...|..|+.+....+|.-+|+
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 999888886554321 2222 267778888899998888732211 3445556666666699999999
Q ss_pred HHhhhccCCCc-------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 497 ALGLLCISNPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 497 ALGl~~aGt~~-------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
.+.=+-|||-. .+.+..|-++++..+-..+--|.-|..-.+.|..+
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 99999999832 22234566777777888888899998888888765
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=95.58 E-value=7.9 Score=46.91 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=53.9
Q ss_pred chhHHHHHHHhhhhhcccchh-hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC--hhhHHHHHHHhccCCChHHHHH
Q 005098 231 EHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND--CDPALALLSEYVGREDACIRIG 307 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e--~d~~~~lL~~~L~~~~~~v~~g 307 (714)
+..|..|.-.++.|...+.-+ ....+.+-+.+.++|+|-.|++++.-++....+. .......|.+.|.++++.+...
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~n 198 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASN 198 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHH
Confidence 356777777788777654322 2334566667788888888888888887533211 1124456666677777777777
Q ss_pred HHHHHHHH
Q 005098 308 AIMGLGIS 315 (714)
Q Consensus 308 A~lGLGl~ 315 (714)
|+..|--+
T Consensus 199 Al~aL~eI 206 (746)
T PTZ00429 199 AAAIVCEV 206 (746)
T ss_pred HHHHHHHH
Confidence 66655444
No 35
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.54 E-value=7.8 Score=46.57 Aligned_cols=303 Identities=16% Similarity=0.130 Sum_probs=147.8
Q ss_pred hhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-H
Q 005098 244 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 322 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~ 322 (714)
...|+.++++..+.+.+......... ...+|.++... .+.+.++..+...+...... ..+...+|.+|.-.++ +
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEA--WLMLGRAQLAA-GDLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHH
Confidence 34577888888877776533333333 33344443322 12344666666555422111 1234455665544443 3
Q ss_pred hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 323 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 323 ~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
+..+.+...+. ++. ..+ +-..++.++.-.++.+.+..+++.+.+..+. +.. ....+|..+...|+-+.+.
T Consensus 653 ~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 653 KAITSLKRALELKPD-NTE----AQIGLAQLLLAAKRTESAKKIAKSLQKQHPK---AAL-GFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---ChH-HHHHHHHHHHHCCCHHHHH
Confidence 45555554443 221 222 3445555555566666666666665443221 111 2233344445556656555
Q ss_pred HHHHHHhh-chhhhhhhhHHHHHHHHhhcCCCHHHHHHHH-hhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHH
Q 005098 402 ATAEVSKT-FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLL-GHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 479 (714)
Q Consensus 402 ~ll~~L~~-~~~~~~r~~~~~~~glayaGtGn~~~i~~LL-~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l 479 (714)
..++.... .+++ .....++.+|...|+.....+.+ ++...+.+ +......+|..+...|+. +.+...+
T Consensus 724 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~---~~A~~~~ 793 (899)
T TIGR02917 724 QAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN---DAVLRTALAELYLAQKDY---DKAIKHY 793 (899)
T ss_pred HHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCH---HHHHHHH
Confidence 55544332 2222 23445677778888865444433 33332222 344444455555556666 7788888
Q ss_pred HHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHhhhc
Q 005098 480 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYYY 557 (714)
Q Consensus 480 ~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~-D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~~~~~ 557 (714)
+.+.+....+.. +...+|.++...++.++++.+.+... +|++... ...+|.+....++. +-...+++..+...
T Consensus 794 ~~~~~~~p~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 794 RTVVKKAPDNAV--VLNNLAWLYLELKDPRALEYAEKALKLAPNIPAI---LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 877654322222 22333444444455778888887753 3333221 23445555554442 33445555444322
Q ss_pred cChhHHHHHHHHHhhhhcCC
Q 005098 558 KDANLLFCVRIAQGLVHMGK 577 (714)
Q Consensus 558 ~d~~~~~~~~lA~Gll~~G~ 577 (714)
.|+. ....+|..+...|.
T Consensus 869 ~~~~--~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 869 EAAA--IRYHLALALLATGR 886 (899)
T ss_pred CChH--HHHHHHHHHHHcCC
Confidence 3443 34445555555543
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.50 E-value=0.028 Score=44.21 Aligned_cols=48 Identities=35% Similarity=0.441 Sum_probs=36.1
Q ss_pred HHHHhhHHHHHhhhccCCC------cHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 005098 488 QNIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTDSEVAMAAVISLGL 535 (714)
Q Consensus 488 ~~vr~g~~lALGl~~aGt~------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGl 535 (714)
|.||.+++.+||-+.-+.+ ..+++..|.+++.|+++.||.+|..|+|-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5688888888886443332 23566777888899999999999999884
No 37
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.40 E-value=1 Score=51.44 Aligned_cols=275 Identities=19% Similarity=0.152 Sum_probs=140.8
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhccCCC-hHHHHHHHHHHHHHh-ccCCCHhHHHHHHhhhc----C--CCChhHHHH
Q 005098 272 LLGVGIVNCGIRNDCDPALALLSEYVGRED-ACIRIGAIMGLGISY-AGTQNDQIRHKLSTILN----D--AKSPLDVIA 343 (714)
Q Consensus 272 llaLGli~~G~~~e~d~~~~lL~~~L~~~~-~~v~~gA~lGLGl~y-~Gs~~~~i~e~L~~~l~----d--~~~~~e~~~ 343 (714)
.=|+|+.|.-.+.+. -++.-|.+|+..+. -.-+++-++++-.+. .=..|.+....+.|.|. | ..+..|+.
T Consensus 208 YHalGlLyq~kr~dk-ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~A- 285 (898)
T COG5240 208 YHALGLLYQSKRTDK-MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAA- 285 (898)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHH-
Confidence 456788876544331 13334446655432 223344444333221 11235567777777774 3 22556653
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH-HHhHhhcCChh---hHHHHHHHHhhchh-hhhhhh
Q 005098 344 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL-GLGLLYLGKQE---SVEATAEVSKTFNE-KIRKYC 418 (714)
Q Consensus 344 ~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l-~lgLi~lG~~e---~~~~ll~~L~~~~~-~~~r~~ 418 (714)
-+..++..=++|+..-+.+-.-++.+... +....||.++ -+.=+.+.+++ .+..-+|.|..+.+ .+.-|+
T Consensus 286 r~v~~~~~~nv~~~~~~~~vs~L~~fL~s-----~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyA 360 (898)
T COG5240 286 RAVCALSEENVGSQFVDQTVSSLRTFLKS-----TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYA 360 (898)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHH
Confidence 23345555566765443332233333321 4446677776 33444444444 34444555554433 344443
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhccc---cCCCC------------------------------------ccccchhHH
Q 005098 419 DMTLLSCAYAGTGNVLKVQNLLGHCAQ---HHEKG------------------------------------EAYQGPAVL 459 (714)
Q Consensus 419 ~~~~~glayaGtGn~~~i~~LL~~~~~---~~~~~------------------------------------~~vrr~avl 459 (714)
-+ -...||+.+.|++|...... |++|+ -..+++++=
T Consensus 361 IT-----tLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vd 435 (898)
T COG5240 361 IT-----TLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVD 435 (898)
T ss_pred HH-----HHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 22 22579998888887765543 33332 123444444
Q ss_pred HHHHhhcccchhhhhH-----------------HHHHHHHH--------------------hcCCHHHHhhHHHHHhhhc
Q 005098 460 GIAMVAMAEELGLEMA-----------------IRSLEHLL--------------------QYGEQNIRRAVPLALGLLC 502 (714)
Q Consensus 460 ~lalI~~~~~~~~~~~-----------------~~~l~~L~--------------------~~~~~~vr~g~~lALGl~~ 502 (714)
+|.=++-..|...|.+ .|++..|- --.|.+||.|+--||.-..
T Consensus 436 aisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 436 AISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444443333222222 22222211 0134588999888884321
Q ss_pred --cCC--CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC-c--------hHHHHHHHHHHhhhcc
Q 005098 503 --ISN--PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-N--------ARIAGMLRNLSSYYYK 558 (714)
Q Consensus 503 --aGt--~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~-n--------~rv~~~lr~l~~~~~~ 558 (714)
++. -...+...|.+.++|.|+.||-.|-+++-.+--..- . +.+..+-+.|..|.+.
T Consensus 516 ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~dipsle~~l~~yIse 584 (898)
T COG5240 516 LNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELELIGYISE 584 (898)
T ss_pred cCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCcchhHHhhheeecc
Confidence 111 234456688999999999999999999877642111 0 2345566677666655
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.39 E-value=0.044 Score=48.92 Aligned_cols=78 Identities=24% Similarity=0.205 Sum_probs=53.3
Q ss_pred ccchhHHHHHHhhcccch-hhhhHHHHHHH---HHhcCCHHHHhhHHHHHhhhccCCC------cHHHHHHHHHhhcCCc
Q 005098 453 YQGPAVLGIAMVAMAEEL-GLEMAIRSLEH---LLQYGEQNIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTD 522 (714)
Q Consensus 453 vrr~avl~lalI~~~~~~-~~~~~~~~l~~---L~~~~~~~vr~g~~lALGl~~aGt~------~~~ai~~L~~l~~D~~ 522 (714)
.|+++++|++-++.+-+. -.+....++.. .+.+.|+.||+.+|-||.-+.--.+ -.++++.|.+++.|+|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 477888888877655431 11223333332 3467899999999999987653222 2566788899999999
Q ss_pred hHHHHHHH
Q 005098 523 SEVAMAAV 530 (714)
Q Consensus 523 ~~Vr~~Ai 530 (714)
..||.+|-
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 99998764
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.25 E-value=5.8 Score=43.39 Aligned_cols=301 Identities=14% Similarity=0.081 Sum_probs=147.9
Q ss_pred hhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCC
Q 005098 244 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--ACIRIGAIMGLGISYAGTQN 321 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~--~~v~~gA~lGLGl~y~Gs~~ 321 (714)
...++.++++..+.+-+...... ..+...+|.++.... +.+.++..+...+..+. ......+...||.+|...++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPET--VELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 45578888888887776543333 234555665554322 23446766666665432 23344567788888887765
Q ss_pred H-hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh-HHHHHHhHhhcCChhh
Q 005098 322 D-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR-LIPLGLGLLYLGKQES 399 (714)
Q Consensus 322 ~-~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r-~a~l~lgLi~lG~~e~ 399 (714)
- +..+.+...+....... .+-..++.++.-.++.+-+..++..+....+......... ...+|..+...|+.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAE----GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 4 44444444443211111 3455667777777766555555555443322210111111 1223333334455556
Q ss_pred HHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHH
Q 005098 400 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 479 (714)
Q Consensus 400 ~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l 479 (714)
+...++.......... ...+.+|..|...|+.....+++.-+.+...+ ........++-++...++. +.+.+.+
T Consensus 199 A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~---~~A~~~l 272 (389)
T PRK11788 199 ARALLKKALAADPQCV--RASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPKLMECYQALGDE---AEGLEFL 272 (389)
T ss_pred HHHHHHHHHhHCcCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence 6655554443221111 23456778888899865544544443322111 0111123344555556665 6677777
Q ss_pred HHHHhcCCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHH-hh
Q 005098 480 EHLLQYGEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLS-SY 555 (714)
Q Consensus 480 ~~L~~~~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~-~D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~-~~ 555 (714)
+...+. +|.... ...+|..+...+ ..+|++.+.+.+ .+|++. ....+++..+..++.++. +-...++++. +.
T Consensus 273 ~~~~~~-~p~~~~--~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEE-YPGADL--LLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHh-CCCchH--HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 766543 333322 244454444443 345677776654 456553 333445555544443321 2223333332 23
Q ss_pred hccChh
Q 005098 556 YYKDAN 561 (714)
Q Consensus 556 ~~~d~~ 561 (714)
...||.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 345665
No 40
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.87 E-value=0.47 Score=56.86 Aligned_cols=265 Identities=22% Similarity=0.225 Sum_probs=150.3
Q ss_pred HHHHHHHhccC-CChHHHHHHHHHHHHHhccCC---CHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHH
Q 005098 289 ALALLSEYVGR-EDACIRIGAIMGLGISYAGTQ---NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 364 (714)
Q Consensus 289 ~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~---~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~ 364 (714)
+..++.+..+. .+..+++-|.+.||=+..+-. ..++...+...+..+ +.++..+|++|||.+.+|+-+.- ...
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~y-Lpf 895 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKY-LPF 895 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhH-HHH
Confidence 33455555543 346788999999998655432 335566666666543 45677799999999988875432 222
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhcc
Q 005098 365 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCA 444 (714)
Q Consensus 365 Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~ 444 (714)
+++. .++|.+.++-..- .+.+.+........+ ..-+++..-|.+.|.
T Consensus 896 il~q----i~sqpk~QyLLLh----------------Slkevi~~~svd~~~-------------~~v~~IW~lL~k~cE 942 (1233)
T KOG1824|consen 896 ILEQ----IESQPKRQYLLLH----------------SLKEVIVSASVDGLK-------------PYVEKIWALLFKHCE 942 (1233)
T ss_pred HHHH----HhcchHhHHHHHH----------------HHHHHHHHhccchhh-------------hhHHHHHHHHHHhcc
Confidence 3332 2333233331110 111111110000000 011233345566664
Q ss_pred ccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHH--------H
Q 005098 445 QHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS--------R 516 (714)
Q Consensus 445 ~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~--------~ 516 (714)
.. +| -.|....-++|.+..-+| +...--++.++.+..|+.|..+.-|+- |.=+-+++-+|.+. +
T Consensus 943 ~~-ee--gtR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsavK--fsisd~p~~id~~lk~~ig~fl~ 1014 (1233)
T KOG1824|consen 943 CA-EE--GTRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAVK--FSISDQPQPIDPLLKQQIGDFLK 1014 (1233)
T ss_pred cc-hh--hhHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhheee--eeecCCCCccCHHHHHHHHHHHH
Confidence 32 22 678888889999999998 555555778888999999988776554 44556666666443 3
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHhh-hccChhHHHHHHHHHhhhhcCCCccccccc-C-CCCC-C
Q 005098 517 LSHDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSY-YYKDANLLFCVRIAQGLVHMGKGLLTLNPY-H-SDRF-L 591 (714)
Q Consensus 517 l~~D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~~~-~~~d~~~~~~~~lA~Gll~~G~g~~tls~~-~-sd~~-~ 591 (714)
+.+|||..|||.|+.++--+-- |-| -|..+|..|--. |++..--+=-+ +.+-++|| | -|.| -
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSaah--NKpslIrDllpeLLp~Ly~eTkvrkelI-----------reVeMGPFKH~VDdgLd 1081 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSAAH--NKPSLIRDLLPELLPLLYSETKVRKELI-----------REVEMGPFKHTVDDGLD 1081 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHHHc--cCHhHHHHHHHHHHHHHHHhhhhhHhhh-----------hhhcccCccccccchHH
Confidence 4789999999999888765533 332 244555554332 22111111111 22445666 2 1333 3
Q ss_pred CChHHHHHHHHHHHhhccc
Q 005098 592 LSPTALAGIVTTLFACLDM 610 (714)
Q Consensus 592 ~~~~a~agLl~~l~~~~~~ 610 (714)
+++.|.=+|.+.+=+++|-
T Consensus 1082 ~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1082 LRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 7888888888887776664
No 41
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=5.3 Score=49.29 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=62.8
Q ss_pred cccchhHHHHHHhhcccchhhhhHHHHHH---HHHhcCCHHHHhhHHHHHhhhccCCCc------HHHHHHHHHhhcCCc
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIRSLE---HLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTD 522 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~~l~---~L~~~~~~~vr~g~~lALGl~~aGt~~------~~ai~~L~~l~~D~~ 522 (714)
.-.+.|.-++..++++=+ |+..++-++. .++++.++.-|.++-+|++.+.=|.++ +++++...++++||+
T Consensus 324 ~~~~~A~~~lDrlA~~L~-g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 324 TPYRAAEQALDRLALHLG-GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred CcHHHHHHHHHHHHhcCC-hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 356788888888877654 3345555544 556888999999999999987555433 233444456689999
Q ss_pred hHHHHHHHHHHHHHcC
Q 005098 523 SEVAMAAVISLGLIGS 538 (714)
Q Consensus 523 ~~Vr~~AiiAlGlV~a 538 (714)
+.||.+|+.|+|.+..
T Consensus 403 prVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999998843
No 42
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.32 E-value=3.2 Score=48.75 Aligned_cols=205 Identities=11% Similarity=0.046 Sum_probs=122.9
Q ss_pred cCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH
Q 005098 354 VGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 433 (714)
Q Consensus 354 lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~ 433 (714)
+...+.+..+.+.+.+.. .. ....+ .+-=+|...|+++.+..+.+.+...+-+-......+...+.++-+-+.
T Consensus 320 lR~~~~e~l~~l~~~~~~-~~----~~~r~--~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~ 392 (574)
T smart00638 320 LRTLSEEQLEQLWRQLYE-KK----KKARR--IFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE 392 (574)
T ss_pred HHhCCHHHHHHHHHHHHh-CC----HHHHH--HHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH
Confidence 345566666776665532 11 11111 122357788999999988887776443322333444545555567889
Q ss_pred HHHHHHHhhccccCCC-CccccchhHHHHHHhhcc---cc------hhhhhHHHHHHHHH---hcCCHHHHhhHHHHHhh
Q 005098 434 LKVQNLLGHCAQHHEK-GEAYQGPAVLGIAMVAMA---EE------LGLEMAIRSLEHLL---QYGEQNIRRAVPLALGL 500 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~~-~~~vrr~avl~lalI~~~---~~------~~~~~~~~~l~~L~---~~~~~~vr~g~~lALGl 500 (714)
+.++.++..+.+.... +..++..+++++|-+..+ +. +-.+-++.+.+.|. ...+...+....-|||=
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 9999999888754321 125677888888765431 11 00122222222222 23455666667777774
Q ss_pred hccCCCcHHHHHHHHHhhc---CCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHHH
Q 005098 501 LCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQ 570 (714)
Q Consensus 501 ~~aGt~~~~ai~~L~~l~~---D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~ 570 (714)
+ |.+.++..|.+++. +....+|..|+.||..+... ...++...|-.+..-...++..|+++-+++
T Consensus 473 ~----g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~-~p~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 473 A----GHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR-DPRKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred c----CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 4 67788888988875 34578999999999865332 233555656555555567778888877654
No 43
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=4.2 Score=48.22 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=139.0
Q ss_pred HHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHh-HH-HHHHh
Q 005098 253 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ-IR-HKLST 330 (714)
Q Consensus 253 l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~-i~-e~L~~ 330 (714)
+..++.++.+.++++-.=|..++--...-..++.-|+...|...++++....|.+|..-|--+.+-+.+.- .. -.|-+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 44566667677777665555554444433334445688889999999999999999988887665543210 11 11333
Q ss_pred hhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-CccccCchhH-hHHHHHHhHhhcCChhhHHHHHH-HH
Q 005098 331 ILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLT-RLIPLGLGLLYLGKQESVEATAE-VS 407 (714)
Q Consensus 331 ~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~-~~~~l~~~~~-r~a~l~lgLi~lG~~e~~~~ll~-~L 407 (714)
.+.|++-+ .|.+|+-.+ +-+|+++-+++|.+.+..- ++-...-+++ -=+..++.+.|-.+.......+. .|
T Consensus 327 lItd~Nrs-----Iat~AITtL-LKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 327 LITDSNRS-----IATLAITTL-LKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hhcccccc-----hhHHHHHHH-HHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 44554321 466666665 4778888888888765321 1111011111 11122333333322222222111 11
Q ss_pred hhchhhhhhhhHHHHHHHHhhcCCC-HHHHHHHHhhccccCCCCccccchhHHHHHHhh-----cccchhhhhHHHHHHH
Q 005098 408 KTFNEKIRKYCDMTLLSCAYAGTGN-VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA-----MAEELGLEMAIRSLEH 481 (714)
Q Consensus 408 ~~~~~~~~r~~~~~~~glayaGtGn-~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~-----~~~~~~~~~~~~~l~~ 481 (714)
++. .-..|-...+..+.-+-.-| ..+-..|.|.|. ..+| -.++..++--+.+++ ..+| +.-.|.+-.
T Consensus 401 r~e--Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe-fIED-ce~~~i~~rILhlLG~EgP~a~~P---skyir~iyN 473 (865)
T KOG1078|consen 401 REE--GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCE-FIED-CEFTQIAVRILHLLGKEGPKAPNP---SKYIRFIYN 473 (865)
T ss_pred Hhc--cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHH-HHHh-ccchHHHHHHHHHHhccCCCCCCc---chhhHHHhh
Confidence 110 00000000000000000001 111112222221 1111 022222222233322 1222 222233333
Q ss_pred HHhcCCHHHHhhHHHHHhhhccCC--CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 482 LLQYGEQNIRRAVPLALGLLCISN--PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 482 L~~~~~~~vr~g~~lALGl~~aGt--~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
..+-.|++||+++--||+-..++. ..+.+.-+|.+.+.|+|+.||-.|-+++-...
T Consensus 474 RviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 474 RVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 446678999999999999988776 56677888999999999999999999988776
No 44
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.86 E-value=1.5 Score=51.78 Aligned_cols=210 Identities=17% Similarity=0.211 Sum_probs=120.3
Q ss_pred chhHHHHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccC-CCcccccCCCCCCCCCcccc
Q 005098 147 SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNW 225 (714)
Q Consensus 147 ~~~~~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~-~d~~l~~~~~~~~~~~~~~w 225 (714)
...|..+.+.+..++-+..+.+|+...... .....-..|..++..+|+. +-.++.. |
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~----------~~~~~r~~~lDal~~aGT~~av~~i~~------------~ 403 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS----------KKEQARKIFLDALPQAGTNPAVKFIKD------------L 403 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS-------------HHHHHHHHHHHHHH-SHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHcCCHHHHHHHHH------------H
Confidence 345888888888898888888887653210 1223345788999999988 5555554 7
Q ss_pred cccccchhH--HHHHHHhhhhhcccchhhHHhhhhhcc----CCCchhHHHHHHHHHHHhcCCCCC----------h---
Q 005098 226 LFKNKEHGK--MSAAASLGMILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRND----------C--- 286 (714)
Q Consensus 226 l~k~~~~~~--~~a~aslGlI~~~~~~~~l~~l~~yL~----s~~~~~~~GAllaLGli~~G~~~e----------~--- 286 (714)
|.+.+--.. .....++...-.--..+.++.+.+.+. ..+.+.+..|++++|.+....... .
T Consensus 404 I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~ 483 (618)
T PF01347_consen 404 IKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI 483 (618)
T ss_dssp HHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS-
T ss_pred HHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh
Confidence 776543222 222333332221122233333333332 356789999999999765321111 0
Q ss_pred -hhHHHHHHHhcc----CCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCC-CChhHHHHHHHHHHHhHhcCCCCHH
Q 005098 287 -DPALALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA-KSPLDVIAFSAISLGLIYVGSCNEE 360 (714)
Q Consensus 287 -d~~~~lL~~~L~----~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~-~~~~e~~~~AalaLGLi~lGs~~~~ 360 (714)
+.....|...+. ..+...+..++-|||-+ | .+.+.+.|.|++.+. ..+..++.+|..||..+ .-.+.++
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~ 558 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--G--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEK 558 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--C--CchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHH
Confidence 112333444433 45667888999999964 4 357999999999865 56667777999999965 4455567
Q ss_pred HHHHHHHHHhhcCccccCchhHhHHHH
Q 005098 361 VAQAIIFALMDRSESELGEPLTRLIPL 387 (714)
Q Consensus 361 ~~e~Ll~~L~~~~~~~l~~~~~r~a~l 387 (714)
+.+.+++.+.+..+ +.=.|.+|+
T Consensus 559 v~~~l~~I~~n~~e----~~EvRiaA~ 581 (618)
T PF01347_consen 559 VREILLPIFMNTTE----DPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHHH-TTS-----HHHHHHHH
T ss_pred HHHHHHHHhcCCCC----ChhHHHHHH
Confidence 88888887765432 222566653
No 45
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.51 E-value=3.5 Score=48.41 Aligned_cols=197 Identities=16% Similarity=0.167 Sum_probs=121.2
Q ss_pred cchhHHHHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccC-CCcccccCCCCCCCCCccc
Q 005098 146 LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGN 224 (714)
Q Consensus 146 l~~~~~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~-~d~~l~~~~~~~~~~~~~~ 224 (714)
....|..+.+.+..++-+..+++|+..-. . + ...-..|..|+..+|+. +-+++..
T Consensus 309 ~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~---------~--~~~r~~~~Dal~~~GT~~a~~~i~~------------ 364 (574)
T smart00638 309 AAAKFLRLVRLLRTLSEEQLEQLWRQLYE-K---------K--KKARRIFLDAVAQAGTPPALKFIKQ------------ 364 (574)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh-C---------C--HHHHHHHHHHHHhcCCHHHHHHHHH------------
Confidence 45678888888888888888888776421 0 0 23346788999999988 5555544
Q ss_pred ccccccchhHH--HHHH-HhhhhhcccchhhHHhhhhhcc----CCCchhHHHHHHHHHHHhcC-CCCC--h-----hhH
Q 005098 225 WLFKNKEHGKM--SAAA-SLGMILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCG-IRND--C-----DPA 289 (714)
Q Consensus 225 wl~k~~~~~~~--~a~a-slGlI~~~~~~~~l~~l~~yL~----s~~~~~~~GAllaLGli~~G-~~~e--~-----d~~ 289 (714)
||.+.+--+.- .+.. +++.+.. ...+.++.+.+.+. .++.+.+.++++++|..-.. ..+. + +..
T Consensus 365 ~i~~~~~~~~ea~~~~~~~~~~~~~-Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~ 443 (574)
T smart00638 365 WIKNKKITPLEAAQLLAVLPHTARY-PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEEL 443 (574)
T ss_pred HHHcCCCCHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Confidence 77666533221 1111 1222221 23334544544443 35678999999999966432 1111 1 123
Q ss_pred HHHHHHhcc----CCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHH
Q 005098 290 LALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 364 (714)
Q Consensus 290 ~~lL~~~L~----~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~ 364 (714)
...|...|. ..+...+..++-|||- +| .+.....|.|.+. +...+..++.+|..||-.+- -.+..++.+.
T Consensus 444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN--~g--~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a-~~~p~~v~~~ 518 (574)
T smart00638 444 LKYLHELLQQAVSKGDEEEIQLYLKALGN--AG--HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLA-KRDPRKVQEV 518 (574)
T ss_pred HHHHHHHHHHHHhcCCchheeeHHHhhhc--cC--ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH-HhCchHHHHH
Confidence 344444433 3455667789999995 44 4678899999987 55556667778889998542 1456677788
Q ss_pred HHHHHhhc
Q 005098 365 IIFALMDR 372 (714)
Q Consensus 365 Ll~~L~~~ 372 (714)
+++.+++.
T Consensus 519 l~~i~~n~ 526 (574)
T smart00638 519 LLPIYLNR 526 (574)
T ss_pred HHHHHcCC
Confidence 88877643
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=28 Score=40.10 Aligned_cols=245 Identities=18% Similarity=0.187 Sum_probs=149.1
Q ss_pred hhcc-CCCchhHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC--H-----hH
Q 005098 258 KYFH-STDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--D-----QI 324 (714)
Q Consensus 258 ~yL~-s~~~~~~~GAllaLGli~~G~~~e~-----d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--~-----~i 324 (714)
.+|. ..++..+.=|.-+|--|.+|+.... +.+...+...+.+++..++--|+.+||-+.--+.. . .+
T Consensus 116 ~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 116 EFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGA 195 (514)
T ss_pred HHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcc
Confidence 4443 4557778888888888877753211 12445566677888999999999999987433321 1 13
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC---CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 325 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC---NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 325 ~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~---~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
++-|+..+..+.. .-..+-+..+|--+.-|+. .-+.++.+++.|..--... ++.+..=++-+++.+-=|..|..+
T Consensus 196 l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred hHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHH
Confidence 3444445543321 1223468889999888873 2255666666654321111 233444456677777778888887
Q ss_pred HHHH---------HHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHH---------HhhccccCCCCccccchhHHHHHH
Q 005098 402 ATAE---------VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNL---------LGHCAQHHEKGEAYQGPAVLGIAM 463 (714)
Q Consensus 402 ~ll~---------~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~L---------L~~~~~~~~~~~~vrr~avl~lal 463 (714)
.+++ .|.+.+.++.- ....++.+.-||+....|.+ ......+..+ .+|.-|.-.|.-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~---PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~--~ikkEAcW~iSN 348 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVT---PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKE--SIKKEACWTISN 348 (514)
T ss_pred HHHHccchHHHHHHHcCCCccccc---HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcch--hHHHHHHHHHHH
Confidence 7654 33333222221 12233455668886655543 3333333332 688889999999
Q ss_pred hhcccchhhhhHHHH--------HHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHH
Q 005098 464 VAMAEELGLEMAIRS--------LEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT 513 (714)
Q Consensus 464 I~~~~~~~~~~~~~~--------l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~ 513 (714)
|..|++ +++-.+ +-++++.++-.+|.-+++|++=+.+|. +.+-+..
T Consensus 349 ItAG~~---~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g-~~~qi~y 402 (514)
T KOG0166|consen 349 ITAGNQ---EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG-TPEQIKY 402 (514)
T ss_pred hhcCCH---HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC-CHHHHHH
Confidence 999997 554443 335678888899999999999776554 4444433
No 47
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=30 Score=44.34 Aligned_cols=135 Identities=22% Similarity=0.259 Sum_probs=77.8
Q ss_pred hHHHHHHHhhhhhcccchhhHHhhhhh-----------ccCCCchhHHHHHHHH-HHHhcCCCCChh----hHHHHHHHh
Q 005098 233 GKMSAAASLGMILLWDVDSGLAQIDKY-----------FHSTDNHVIAGALLGV-GIVNCGIRNDCD----PALALLSEY 296 (714)
Q Consensus 233 ~~~~a~aslGlI~~~~~~~~l~~l~~y-----------L~s~~~~~~~GAllaL-Gli~~G~~~e~d----~~~~lL~~~ 296 (714)
.|.+|+.++|.|... +...+.+| -|+++..++ +|.-.+ +.+-.-..+-.| .++.-|.+.
T Consensus 973 Sk~GaAfGf~~i~~~----a~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQ----AGEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred cccchhhchHHHHHH----HHHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 688888888887642 22233333 335555555 333222 221111000011 144445555
Q ss_pred ccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhh------cCC-C-ChhHHHHHHHHHHHhHhcCCCC-------HHH
Q 005098 297 VGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL------NDA-K-SPLDVIAFSAISLGLIYVGSCN-------EEV 361 (714)
Q Consensus 297 L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l------~d~-~-~~~e~~~~AalaLGLi~lGs~~-------~~~ 361 (714)
+.+...-+|.++|++|.=.-.|...+++.+.+..+. +|+ . .-.++..-++=+|+-+.+-.|+ .++
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 666666799999999999999987777777665432 232 1 1234455566677777665553 367
Q ss_pred HHHHHHHHhhc
Q 005098 362 AQAIIFALMDR 372 (714)
Q Consensus 362 ~e~Ll~~L~~~ 372 (714)
.+.+|..|.+.
T Consensus 1128 l~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1128 LDIILPFLLDE 1138 (1702)
T ss_pred HHHHHHHHhcc
Confidence 88888888764
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.60 E-value=1.5 Score=39.04 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=45.5
Q ss_pred cccchhHHHHHHhhcccchhhh-----hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhhc
Q 005098 452 AYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSH 519 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~-----~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~ 519 (714)
.++..++.+++-+..+.|.... .+.+.+-.++.+.++.+|..++.+|+-++.+.+.. .++..|.++++
T Consensus 22 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 22 NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh
Confidence 5566666666666555331111 12222333445567777777777777776554321 12445556666
Q ss_pred CCchHHHHHHHHHHHH
Q 005098 520 DTDSEVAMAAVISLGL 535 (714)
Q Consensus 520 D~~~~Vr~~AiiAlGl 535 (714)
+.+..++..|..+++-
T Consensus 102 ~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 102 SSNEDIQKNATGALSN 117 (120)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666677666655543
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.58 E-value=16 Score=39.66 Aligned_cols=254 Identities=15% Similarity=0.116 Sum_probs=143.9
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCChh-----hHHHHHHHhccCCChHHHHHHHHHHHHHhccCC--CHh-----HHHHHH
Q 005098 262 STDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQ--NDQ-----IRHKLS 329 (714)
Q Consensus 262 s~~~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~--~~~-----i~e~L~ 329 (714)
...+.-++-|.-+|--+.+|+..... .+..++...|.+++..++--++-+||-+.-.|. +.. +++.|+
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL 205 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL 205 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH
Confidence 45667777888888888888654321 245667777788888888889999998744332 122 344555
Q ss_pred hhhcCCCChhHHHHHHHHHHHhHhcCCCC---HHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHH-
Q 005098 330 TILNDAKSPLDVIAFSAISLGLIYVGSCN---EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAE- 405 (714)
Q Consensus 330 ~~l~d~~~~~e~~~~AalaLGLi~lGs~~---~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~- 405 (714)
.++..+.......+-+-..|.-+.=|... ...+..-+.+|..---+. +..+.-=++-+++.+.=|.+|.++++++
T Consensus 206 ~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~ 284 (526)
T COG5064 206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDV 284 (526)
T ss_pred HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhc
Confidence 55555444334445677777776666542 223333333322110010 2234444556777777788888888664
Q ss_pred --------HHhhc----hhhhhhhhHHHHHHHHhhcCCCH------------HHHHHHHhhccccCCCCccccchhHHHH
Q 005098 406 --------VSKTF----NEKIRKYCDMTLLSCAYAGTGNV------------LKVQNLLGHCAQHHEKGEAYQGPAVLGI 461 (714)
Q Consensus 406 --------~L~~~----~~~~~r~~~~~~~glayaGtGn~------------~~i~~LL~~~~~~~~~~~~vrr~avl~l 461 (714)
.|.+- ..|..|.- .-.=||+. .+.+.|| ++..+ .+|+-+.-.|
T Consensus 285 g~~~RLvElLs~~sa~iqtPalR~v-------GNIVTG~D~QTqviI~~G~L~a~~~lL----s~~ke--~irKEaCWTi 351 (526)
T COG5064 285 GIPGRLVELLSHESAKIQTPALRSV-------GNIVTGSDDQTQVIINCGALKAFRSLL----SSPKE--NIRKEACWTI 351 (526)
T ss_pred CCcHHHHHHhcCccccccCHHHHhh-------cCeeecCccceehheecccHHHHHHHh----cChhh--hhhhhhheee
Confidence 33221 12333322 12224542 2233332 22222 6777777777
Q ss_pred HHhhcccchhhhhHHHH--------HHHHHhcCCHHHHhhHHHHHhhhcc-CCCcHHHHHHHHHhhcCCchHHHHHHHHH
Q 005098 462 AMVAMAEELGLEMAIRS--------LEHLLQYGEQNIRRAVPLALGLLCI-SNPKVNVMDTLSRLSHDTDSEVAMAAVIS 532 (714)
Q Consensus 462 alI~~~~~~~~~~~~~~--------l~~L~~~~~~~vr~g~~lALGl~~a-Gt~~~~ai~~L~~l~~D~~~~Vr~~AiiA 532 (714)
.-|-.|+. +++..+ +-||+.+++-.+|.-+|+|+.=+.. |.+.++.++.| |.+++|=.
T Consensus 352 SNITAGnt---eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL----------v~qG~Ikp 418 (526)
T COG5064 352 SNITAGNT---EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL----------VSQGFIKP 418 (526)
T ss_pred cccccCCH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH----------HHccchhH
Confidence 77777775 554433 3367788888999999999875543 44556554433 34455555
Q ss_pred HHHHcCCCCc
Q 005098 533 LGLIGSGTNN 542 (714)
Q Consensus 533 lGlV~aGt~n 542 (714)
|--.+.+..|
T Consensus 419 Lc~~L~~~dN 428 (526)
T COG5064 419 LCDLLDVVDN 428 (526)
T ss_pred HHHHHhccCc
Confidence 5544444444
No 50
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=7.2 Score=42.61 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHhcCCCCCh-hhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHh--------HHHHHHhhhcCC
Q 005098 265 NHVIAGALLGVGIVNCGIRNDC-DPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ--------IRHKLSTILNDA 335 (714)
Q Consensus 265 ~~~~~GAllaLGli~~G~~~e~-d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~--------i~e~L~~~l~d~ 335 (714)
.+--.|+++.+--++-+.+.-. --.+..|...+++.+..+|.-++-++|.+.+.-.++. ++..|...+.|.
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence 3444566766554332211000 0034567778888889999999999999887655443 334444444443
Q ss_pred CChhHHHHHHHHHHHhHh
Q 005098 336 KSPLDVIAFSAISLGLIY 353 (714)
Q Consensus 336 ~~~~e~~~~AalaLGLi~ 353 (714)
+..+.+.|++|||-+.
T Consensus 264 --s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 264 --SDKVKCQAGLALRNLA 279 (550)
T ss_pred --ChHHHHHHHHHHhhhc
Confidence 3456678999999764
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.14 E-value=44 Score=40.80 Aligned_cols=318 Identities=11% Similarity=-0.005 Sum_probs=149.7
Q ss_pred hhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC-
Q 005098 242 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ- 320 (714)
Q Consensus 242 GlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~- 320 (714)
-++..++.++++..+.+.+....+... .+.+|.++... .+.+.++..+...+.........- +.+|.++....
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~---~~~la~~l~~~-g~~~~Al~~l~~al~~~P~~~~~~--~~la~~l~~~~~ 165 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN---LLALAYVYKRA-GRHWDELRAMTQALPRAPQTQQYP--TEYVQALRNNRL 165 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHCCC
Confidence 345578999999999998865444444 44455554432 233447777777765322111111 22333333222
Q ss_pred CHhHHHHHHhhhcCCCC--hhHHHHHHHHHHHhHhcCCCC---------HHHHHHHHHHHhhcCcccc--CchhHhHHHH
Q 005098 321 NDQIRHKLSTILNDAKS--PLDVIAFSAISLGLIYVGSCN---------EEVAQAIIFALMDRSESEL--GEPLTRLIPL 387 (714)
Q Consensus 321 ~~~i~e~L~~~l~d~~~--~~e~~~~AalaLGLi~lGs~~---------~~~~e~Ll~~L~~~~~~~l--~~~~~r~a~l 387 (714)
.+..++.+.....+++. ..+.. .++..+- +...... .++.+ .++.+....+..+ ...+.++-.-
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~-~~~~~~r-~~~~~~~~~~~r~~~ad~Al~-~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEAD-AAAELVR-LSFMPTRSEKERYAIADRALA-QYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHH-hhcccccChhHHHHHHHHHHH-HHHHHHhhcccCCccchHHHHHHHH
Confidence 33455555544332210 01110 1111111 1111111 11222 1222221111111 1122222111
Q ss_pred -HHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCc--cccchhHHHHHHh
Q 005098 388 -GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE--AYQGPAVLGIAMV 464 (714)
Q Consensus 388 -~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~--~vrr~avl~lalI 464 (714)
...|...|+-+++....+.+...+++...+...+ ++.+|...|+.+.....+.-+........ .....+-++.++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 1133445666667777777766543333333222 47789999997655554443322211100 1123344444555
Q ss_pred hcccchhhhhHHHHHHHHHhcCC------------HH---HHhhHHHHHhhhccCCCcHHHHHHHHHhhc-CCchHHHHH
Q 005098 465 AMAEELGLEMAIRSLEHLLQYGE------------QN---IRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMA 528 (714)
Q Consensus 465 ~~~~~~~~~~~~~~l~~L~~~~~------------~~---vr~g~~lALGl~~aGt~~~~ai~~L~~l~~-D~~~~Vr~~ 528 (714)
-.++. +.+.+.++.+.+... |+ ...-.-+|..+...| -..+|++.|.+... +|+.. .
T Consensus 322 ~~g~~---~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~---~ 394 (765)
T PRK10049 322 ESENY---PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQ---G 394 (765)
T ss_pred hcccH---HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH---H
Confidence 55555 667777777654321 11 111122233333332 34677788887653 56652 3
Q ss_pred HHHHHHHHcCCCCch-HHHHHHHHHHhhhccChhHHHHHHHHHhhhhcCCCcc
Q 005098 529 AVISLGLIGSGTNNA-RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 529 AiiAlGlV~aGt~n~-rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G~g~~ 580 (714)
+.+.+|.+....+++ +..+.+++... .+|+. ..+.+++|...++.|.+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~-~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEV---LEPRN-INLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCC-hHHHHHHHHHHHHhCCH
Confidence 568888888776664 33444554333 35543 23667777788887764
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=11 Score=44.34 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=70.6
Q ss_pred hhHHHHHHhhcccchhhhhHHHHHHHH----HhcCC-H--------------HHHhhHHHHHhhhccCC--CcHHHHHHH
Q 005098 456 PAVLGIAMVAMAEELGLEMAIRSLEHL----LQYGE-Q--------------NIRRAVPLALGLLCISN--PKVNVMDTL 514 (714)
Q Consensus 456 ~avl~lalI~~~~~~~~~~~~~~l~~L----~~~~~-~--------------~vr~g~~lALGl~~aGt--~~~~ai~~L 514 (714)
+..++-||.-+..|+ .+.+.+++++- ....+ | ..-.|.+-+||-- ... .+..+.++|
T Consensus 590 a~AL~~gF~P~~~~V-y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~-ie~Lva~snl~~ll 667 (885)
T KOG2023|consen 590 ASALGVGFLPYAQPV-YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH-IEPLVAQSNLLDLL 667 (885)
T ss_pred HHHHhccccccCHHH-HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc-hHHHhhhccHHHHH
Confidence 456777888888875 46677777632 21111 1 2334444444410 000 244477888
Q ss_pred HHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHHHhhh-ccChhHHHHHHHHHhhhhcCCCcc
Q 005098 515 SRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 515 ~~l~~D~~~~Vr~~AiiAlGlV~aGt~---n~rv~~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G~g~~ 580 (714)
..-+.|+.++|||.|..=||=+..-.. -|.+..++.-+..-. ..+..+-.-+.-|+|-+.+-.|.-
T Consensus 668 l~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 668 LQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh
Confidence 888999999999987766664332211 234455555554211 112235667888999888765543
No 53
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=6.2 Score=46.08 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=57.5
Q ss_pred cCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHH---HhccCCC-----H----hHHHHH
Q 005098 261 HSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGI---SYAGTQN-----D----QIRHKL 328 (714)
Q Consensus 261 ~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl---~y~Gs~~-----~----~i~e~L 328 (714)
.+.+..+|..|+-|+=..+-|.. -....+....+++.+..+.+|.+|+-.+-+ .+-+... + +++..+
T Consensus 208 ~~~D~~Vrt~A~eglL~L~eg~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~v 286 (823)
T KOG2259|consen 208 HDQDFRVRTHAVEGLLALSEGFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSV 286 (823)
T ss_pred cCCCcchHHHHHHHHHhhccccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHH
Confidence 35566778888877555544542 223466777888999889999988655443 3322211 1 233334
Q ss_pred HhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHH
Q 005098 329 STILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQ 363 (714)
Q Consensus 329 ~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e 363 (714)
-..+.|-++.+++ .|+=+||-. ++-+++.+.
T Consensus 287 C~~v~D~sl~VRV--~AaK~lG~~--~~vSee~i~ 317 (823)
T KOG2259|consen 287 CRAVRDRSLSVRV--EAAKALGEF--EQVSEEIIQ 317 (823)
T ss_pred HHHHhcCceeeee--hHHHHhchH--HHhHHHHHH
Confidence 4455676655555 678888854 444444433
No 54
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.57 E-value=0.82 Score=54.57 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=75.0
Q ss_pred HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhc-cCC---CcHHH
Q 005098 435 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC-ISN---PKVNV 510 (714)
Q Consensus 435 ~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~-aGt---~~~~a 510 (714)
++..+.+-+.+ .+ +.+|..|.=.++.+-.++=+ +.+...+.++..+.+|.||+.|++|++=+| .+. ...-.
T Consensus 93 avNti~kDl~d-~N--~~iR~~AlR~ls~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~ 167 (757)
T COG5096 93 AVNTIQKDLQD-PN--EEIRGFALRTLSLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGL 167 (757)
T ss_pred HHHHHHhhccC-CC--HHHHHHHHHHHHhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccH
Confidence 34455555432 23 38888888888888766654 556666777889999999999999999988 433 22225
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 511 MDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 511 i~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
++.|.-++.|+|+.|-.+|++++.-+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67788889999999999999999988765
No 55
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=89.94 E-value=19 Score=42.77 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=88.3
Q ss_pred HHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHh
Q 005098 438 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 517 (714)
Q Consensus 438 ~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l 517 (714)
+|+..+..+.. .+||+|+-.+|+|+ +-+|.+.+..++-.-+...+-+-|-+..+|+|++.--.+--.++-.|..=
T Consensus 929 eLlelLkahkK---~iRRaa~nTfG~Ia--kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmne 1003 (1172)
T KOG0213|consen 929 ELLELLKAHKK---EIRRAAVNTFGYIA--KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNE 1003 (1172)
T ss_pred HHHHHHHHHHH---HHHHHHHhhhhHHH--HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhh
Confidence 56666666654 79999999999995 55666666666554456667788988899999887666777777766555
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCCchH---HHHHHHHHHh-hhccChh-----HHHHHHHHHhhhhcCCCc
Q 005098 518 SHDTDSEVAMAAVISLGLIGSGTNNAR---IAGMLRNLSS-YYYKDAN-----LLFCVRIAQGLVHMGKGL 579 (714)
Q Consensus 518 ~~D~~~~Vr~~AiiAlGlV~aGt~n~r---v~~~lr~l~~-~~~~d~~-----~~~~~~lA~Gll~~G~g~ 579 (714)
-.-|+.+|.++.+=||++..--+++.. |-.++--|.- ..-+|+. .-...|||+| +-|.|-
T Consensus 1004 YrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg--~~g~g~ 1072 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG--VPGTGC 1072 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC--CCCcCc
Confidence 567899999999999998764333310 1111111111 1123442 3356688888 666665
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.77 E-value=34 Score=37.31 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhcCCCChhHHHHHHHHHH
Q 005098 271 ALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISL 349 (714)
Q Consensus 271 AllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~d~~~~~e~~~~AalaL 349 (714)
-..|+.....|. .+.++..+...+...... ..+...+|.++...++. +..+.+...+..+.........+...+
T Consensus 39 y~~g~~~~~~~~---~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 39 YFKGLNFLLNEQ---PDKAIDLFIEMLKVDPET--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344555544553 344788888777643222 24556677777666653 455555555543322222222466788
Q ss_pred HhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhch-hhhh-hhh-HHHHHHHH
Q 005098 350 GLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN-EKIR-KYC-DMTLLSCA 426 (714)
Q Consensus 350 GLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~-~~~~-r~~-~~~~~gla 426 (714)
|.++...++.+.+...+..+.+..+ . .......++..+...|+-+++....+.+.... .+.. ... ....+|..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGD---F-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCc---c-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999888887777666665543211 1 12223334445555666666666666554322 1111 111 12356777
Q ss_pred hhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCC-
Q 005098 427 YAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN- 505 (714)
Q Consensus 427 yaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt- 505 (714)
|...|+.....+.+.-+.+...+ ..+....+|..+...++. +.+.+.++...+. +|.....+-..++.++...
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQ--CVRASILLGDLALAQGDY---AAAIEALERVEEQ-DPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcC
Confidence 88889865444433333221111 344455666666677776 7788888877654 3333222233444444443
Q ss_pred CcHHHHHHHHHhhc-CCchH
Q 005098 506 PKVNVMDTLSRLSH-DTDSE 524 (714)
Q Consensus 506 ~~~~ai~~L~~l~~-D~~~~ 524 (714)
...+++..+.++.. +|+..
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred CHHHHHHHHHHHHHhCCCch
Confidence 34556667776643 45543
No 57
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.44 E-value=3.1 Score=49.19 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=110.8
Q ss_pred cCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhc-CCC
Q 005098 354 VGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAG-TGN 432 (714)
Q Consensus 354 lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaG-tGn 432 (714)
+...+.+-.+.+.+.+.... +....|- .+-=+|...|++..+..+.+.+....-+-.. +.-+...+.+.- .-+
T Consensus 356 lr~l~~~~L~~l~~~~~~~~----~~~~~r~-~~lDal~~aGT~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt 429 (618)
T PF01347_consen 356 LRTLSYEDLEELYKQLKSKS----KKEQARK-IFLDALPQAGTNPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPT 429 (618)
T ss_dssp HTTS-HHHHHHHHHHHTTS-------HHHHH-HHHHHHHHH-SHHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----
T ss_pred HhcCCHHHHHHHHHHHHhhc----cHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCC
Confidence 35556666666666543211 1112221 1223566789999998888887763322222 223344444444 777
Q ss_pred HHHHHHHHhhccccCC-CCccccchhHHHHHHhhcccch---------------hhhhHHHHHHHHH---hcCCHHHHhh
Q 005098 433 VLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMVAMAEEL---------------GLEMAIRSLEHLL---QYGEQNIRRA 493 (714)
Q Consensus 433 ~~~i~~LL~~~~~~~~-~~~~vrr~avl~lalI~~~~~~---------------~~~~~~~~l~~L~---~~~~~~vr~g 493 (714)
.+.++.++.++..... .+..++..|++++|-+..+--. -.+-++.+...|- ...+..-+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 8888888777754321 1126777888888776432111 0111222333332 3456677777
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHhhcCC---chHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHH
Q 005098 494 VPLALGLLCISNPKVNVMDTLSRLSHDT---DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 569 (714)
Q Consensus 494 ~~lALGl~~aGt~~~~ai~~L~~l~~D~---~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA 569 (714)
+.-|||=+ |.+.+++.|.++..+. ...+|..|+-|+.-+.. ....++.+.|-.+..-..+++..|.++-+.
T Consensus 510 ~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~-~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 510 YLKALGNL----GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK-HCPEKVREILLPIFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp HHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG-T-HHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred HHHHhhcc----CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhh-cCcHHHHHHHHHHhcCCCCChhHHHHHHHH
Confidence 88888855 4567899999998766 77899999999986522 233356566655555446677777776543
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=89.07 E-value=47 Score=38.91 Aligned_cols=208 Identities=11% Similarity=-0.035 Sum_probs=105.4
Q ss_pred hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 323 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 323 ~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
+..+.+...+. |++ ..+ +-..+|.++...++.+.+...++...+..++ ..- ....+|..+...|+.+++.
T Consensus 322 ~A~~~~~~Al~ldP~-~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~-a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 322 KAKEHAIKATELDHN-NPQ----ALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SAD-IKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHHCCCHHHHH
Confidence 44555555554 442 223 3445677776666665555555544433222 111 2344577788888888777
Q ss_pred HHHHHHhhchhhhhhhhHHHHHHHHhhcCCC-HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHH
Q 005098 402 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN-VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 480 (714)
Q Consensus 402 ~ll~~L~~~~~~~~r~~~~~~~glayaGtGn-~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~ 480 (714)
..++.....+...... .+..+.++.-.|+ .+++..+.+.......+ .......+|..+...|+. +.+...+.
T Consensus 393 ~~~~~Al~l~P~~~~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~---~eA~~~~~ 465 (553)
T PRK12370 393 QTINECLKLDPTRAAA--GITKLWITYYHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKH---ELARKLTK 465 (553)
T ss_pred HHHHHHHhcCCCChhh--HHHHHHHHHhccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCH---HHHHHHHH
Confidence 7776655543221111 1122222333566 34544444433221111 223345566677777775 66777777
Q ss_pred HHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCc---hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 005098 481 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTD---SEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 554 (714)
Q Consensus 481 ~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~---~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~ 554 (714)
.+.... | -...+...++..+++.++ ++...|.++..... ...+. +.++.+.-++++-..+++++.+
T Consensus 466 ~~~~~~-~-~~~~~~~~l~~~~~~~g~-~a~~~l~~ll~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~ 534 (553)
T PRK12370 466 EISTQE-I-TGLIAVNLLYAEYCQNSE-RALPTIREFLESEQRIDNNPGL-----LPLVLVAHGEAIAEKMWNKFKN 534 (553)
T ss_pred Hhhhcc-c-hhHHHHHHHHHHHhccHH-HHHHHHHHHHHHhhHhhcCchH-----HHHHHHHHhhhHHHHHHHHhhc
Confidence 765432 2 233344455555666654 66666666543211 11111 4555555667777777766544
No 59
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.86 E-value=27 Score=37.84 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=34.6
Q ss_pred cccchhHHHHHHhhcccchh-----hhhHHHHHHHHHhcCCHHHHhhHHHHHhhhc
Q 005098 452 AYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVPLALGLLC 502 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~-----~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~ 502 (714)
.+..+|+-+-||+...-|.. .+.....|..++++.+..||.++.-+||++|
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56677788888877554421 0222233445567889999999999999986
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=65 Score=38.48 Aligned_cols=268 Identities=14% Similarity=0.174 Sum_probs=129.5
Q ss_pred CchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC--HhHHHHHHhhhcCCCChhHH
Q 005098 264 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLSTILNDAKSPLDV 341 (714)
Q Consensus 264 ~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--~~i~e~L~~~l~d~~~~~e~ 341 (714)
....+.|-+.+...+|..+- ...-...++..-+. ++....+|.+|+ |+...+|.+ +|+...+...+..+....
T Consensus 86 ~~~krigylaa~qSf~~~td-vlmL~tn~~rkdl~-S~n~ye~giAL~-GLS~fvTpdLARDLa~Dv~tLL~sskpYv-- 160 (877)
T KOG1059|consen 86 FQQKRIGYLAASQSFHDDTD-VLMLTTNLLRKDLN-SSNVYEVGLALS-GLSCIVTPDLARDLADDVFTLLNSSKPYV-- 160 (877)
T ss_pred hHHHHHhHHHHHHhhcCCcc-HHHHHHHHHHHHhc-cCccchhhheec-ccccccCchhhHHHHHHHHHHHhcCchHH--
Confidence 34567788888877777641 11112233333344 334556666665 666677765 577777776666543222
Q ss_pred HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh-----hhHHHHHHHHhhchh----
Q 005098 342 IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-----ESVEATAEVSKTFNE---- 412 (714)
Q Consensus 342 ~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~-----e~~~~ll~~L~~~~~---- 412 (714)
+-=|.+.|=-||+-- +|+....+..|.+.-+. .++-+..++++.=|=...+. ..++.+.+.|.+..+
T Consensus 161 RKkAIl~lykvFLkY--PeAlr~~FprL~EkLeD--pDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmL 236 (877)
T KOG1059|consen 161 RKKAILLLYKVFLKY--PEALRPCFPRLVEKLED--PDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVL 236 (877)
T ss_pred HHHHHHHHHHHHHhh--hHhHhhhHHHHHHhccC--CCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeeh
Confidence 234666666676643 45666666666665433 24444444444322222111 123333333332211
Q ss_pred -hhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCcccc-------chhHHHHHHh-hcccchh-hhhHHHHHHHH
Q 005098 413 -KIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQ-------GPAVLGIAMV-AMAEELG-LEMAIRSLEHL 482 (714)
Q Consensus 413 -~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vr-------r~avl~lalI-~~~~~~~-~~~~~~~l~~L 482 (714)
.+.+-.+.++ -=...-..+|+.-+.+..+. .+- -..+++..+. ++.+... -+.|..-+.-+
T Consensus 237 IKiiKLF~aLt-------plEPRLgKKLieplt~li~s--T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~f 307 (877)
T KOG1059|consen 237 IKLLKLFAALT-------PLEPRLGKKLIEPITELMES--TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIF 307 (877)
T ss_pred HHHHHHHhhcc-------ccCchhhhhhhhHHHHHHHh--hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhh
Confidence 0111000000 00000011111111110000 000 0011111110 1112111 13355556777
Q ss_pred HhcCCHHHHhhHHHHHhhhccCCCcHHHH----HHHHHhhcCCchHHHHHHH-HHHHHHcCCCCchHHHHHHHHHHhh
Q 005098 483 LQYGEQNIRRAVPLALGLLCISNPKVNVM----DTLSRLSHDTDSEVAMAAV-ISLGLIGSGTNNARIAGMLRNLSSY 555 (714)
Q Consensus 483 ~~~~~~~vr~g~~lALGl~~aGt~~~~ai----~~L~~l~~D~~~~Vr~~Ai-iAlGlV~aGt~n~rv~~~lr~l~~~ 555 (714)
..+.||+.||-+++|++-+. .-++.++ |+..+.+.|.|..+|.-|+ +-.||| +.-.+..+-+.|..+
T Consensus 308 iedsDqNLKYlgLlam~KI~--ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV----skkNl~eIVk~LM~~ 379 (877)
T KOG1059|consen 308 IEDSDQNLKYLGLLAMSKIL--KTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMV----SKKNLMEIVKTLMKH 379 (877)
T ss_pred hhcCCccHHHHHHHHHHHHh--hhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh----hhhhHHHHHHHHHHH
Confidence 89999999999999999873 3455554 4667889999999997665 445777 222344445555444
No 61
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.09 E-value=0.78 Score=31.70 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHH
Q 005098 511 MDTLSRLSHDTDSEVAMAAVISLGLI 536 (714)
Q Consensus 511 i~~L~~l~~D~~~~Vr~~AiiAlGlV 536 (714)
+..|.++++|++..||.+|+.++|-+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45566777788888888888777765
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.27 E-value=7.7 Score=39.44 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHhhHHHHHhhhccCCC-------c----HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 476 IRSLEHLLQYGEQNIRRAVPLALGLLCISNP-------K----VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 476 ~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~-------~----~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
...+...+.+.+|.+|..++-.+..+.-..+ . ..+...+.+.+.|++..||..|.-++..+..-
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 6667777788899999998877777654444 1 34677888899999999999988887777543
No 63
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=86.23 E-value=84 Score=37.71 Aligned_cols=298 Identities=12% Similarity=-0.024 Sum_probs=144.5
Q ss_pred cchhHHHHHHHhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 005098 230 KEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 309 (714)
Q Consensus 230 ~~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~ 309 (714)
.++.......+......|+.+++...+++.+....+... +...+|.++... .+.+.++..+...+.-..... .+.
T Consensus 73 p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~--a~~~la~~l~~~-g~~~~Ai~~l~~Al~l~P~~~--~a~ 147 (656)
T PRK15174 73 KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE--DVLLVASVLLKS-KQYATVADLAEQAWLAFSGNS--QIF 147 (656)
T ss_pred CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcH--HHH
Confidence 334444444444556689999999999988764444433 344445544322 234557777777765322111 233
Q ss_pred HHHHHHhccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 005098 310 MGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 387 (714)
Q Consensus 310 lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l 387 (714)
..+|-++...++ ++..+.+...+. +++ +.+.. ..++ .+...++.+-+...+..+....+.. .+.. ...+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~----~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~-~~~~--~~~l 218 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMI----ATCL-SFLNKSRLPEDHDLARALLPFFALE-RQES--AGLA 218 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHH----HHHH-HHHHcCCHHHHHHHHHHHHhcCCCc-chhH--HHHH
Confidence 445555555555 345555554443 222 22221 1112 2444555544444555444332111 1111 1223
Q ss_pred HHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHH-----HHHHHHhhccccCCCCccccchhHHHHH
Q 005098 388 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-----KVQNLLGHCAQHHEKGEAYQGPAVLGIA 462 (714)
Q Consensus 388 ~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~-----~i~~LL~~~~~~~~~~~~vrr~avl~la 462 (714)
+..+...|+.+++...++......... ......+|.+|...|+.. ++..+-+.+.-+.+ +.+....+|..
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~~ 293 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYADA 293 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Confidence 456667787777666665544332111 222345677778888754 34444333332211 44444555555
Q ss_pred HhhcccchhhhhHHHHHHHHHhc--CCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhh-cCCchHHHHHHHHHHHHHcC
Q 005098 463 MVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLS-HDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 463 lI~~~~~~~~~~~~~~l~~L~~~--~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~-~D~~~~Vr~~AiiAlGlV~a 538 (714)
+...|+. +.+...++..++. .++.++.. +|.++...+ -.++++.+.+.. .+|+... .....+..+...
T Consensus 294 l~~~g~~---~eA~~~l~~al~l~P~~~~a~~~----La~~l~~~G~~~eA~~~l~~al~~~P~~~~-~~~~~a~al~~~ 365 (656)
T PRK15174 294 LIRTGQN---EKAIPLLQQSLATHPDLPYVRAM----YARALRQVGQYTAASDEFVQLAREKGVTSK-WNRYAAAALLQA 365 (656)
T ss_pred HHHCCCH---HHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhCccchH-HHHHHHHHHHHC
Confidence 5555665 6677777766543 23444433 344443333 345677777765 3455421 111123334444
Q ss_pred CCCchHHHHHHHHHHhh
Q 005098 539 GTNNARIAGMLRNLSSY 555 (714)
Q Consensus 539 Gt~n~rv~~~lr~l~~~ 555 (714)
|..+ +-...+++..+.
T Consensus 366 G~~d-eA~~~l~~al~~ 381 (656)
T PRK15174 366 GKTS-EAESVFEHYIQA 381 (656)
T ss_pred CCHH-HHHHHHHHHHHh
Confidence 5433 233445554433
No 64
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=85.44 E-value=13 Score=45.15 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=107.8
Q ss_pred hhhhhcc-CCCchhHHHHHHHHHHHhcCCCCChh-hHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhh
Q 005098 255 QIDKYFH-STDNHVIAGALLGVGIVNCGIRNDCD-PALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL 332 (714)
Q Consensus 255 ~l~~yL~-s~~~~~~~GAllaLGli~~G~~~e~d-~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l 332 (714)
++.++.. +.++-++.=|++.+|=+..+.....- .....+.+.+.++++.++.+|..+||-+.+|+-.. ....++..+
T Consensus 822 l~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~-yLpfil~qi 900 (1233)
T KOG1824|consen 822 LIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK-YLPFILEQI 900 (1233)
T ss_pred HHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh-HHHHHHHHH
Confidence 4445443 56778999999999988554321110 13345667888999999999999999999987643 333333333
Q ss_pred c-CCCC-------hhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh-HHHHHHhHhhcCChhhHHHH
Q 005098 333 N-DAKS-------PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR-LIPLGLGLLYLGKQESVEAT 403 (714)
Q Consensus 333 ~-d~~~-------~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r-~a~l~lgLi~lG~~e~~~~l 403 (714)
. ++.- -.|+...+... +-...++.+...|+..-+. .+...| ..+-++|.+.+-.++..-.-
T Consensus 901 ~sqpk~QyLLLhSlkevi~~~svd--------~~~~~v~~IW~lL~k~cE~--~eegtR~vvAECLGkL~l~epesLlpk 970 (1233)
T KOG1824|consen 901 ESQPKRQYLLLHSLKEVIVSASVD--------GLKPYVEKIWALLFKHCEC--AEEGTRNVVAECLGKLVLIEPESLLPK 970 (1233)
T ss_pred hcchHhHHHHHHHHHHHHHHhccc--------hhhhhHHHHHHHHHHhccc--chhhhHHHHHHHhhhHHhCChHHHHHH
Confidence 2 2210 01221111111 1134567777777654444 333445 45557888877666655554
Q ss_pred HHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHH--------HhhccccCCCCccccchhHHHHHHhhcccc
Q 005098 404 AEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNL--------LGHCAQHHEKGEAYQGPAVLGIAMVAMAEE 469 (714)
Q Consensus 404 l~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~L--------L~~~~~~~~~~~~vrr~avl~lalI~~~~~ 469 (714)
++.....+.+..|...+ -+.-|.=+-....++.+ +....+ .+ ..|||.|+..+-=..-..|
T Consensus 971 L~~~~~S~a~~~rs~vv--savKfsisd~p~~id~~lk~~ig~fl~~~~d-pD--l~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 971 LKLLLRSEASNTRSSVV--SAVKFSISDQPQPIDPLLKQQIGDFLKLLRD-PD--LEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred HHHHhcCCCcchhhhhh--heeeeeecCCCCccCHHHHHHHHHHHHHHhC-Cc--hhHHHHHHHHHHHHHccCH
Confidence 55555555555554322 12223223332222222 222221 11 2677777776665555555
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=85.40 E-value=92 Score=37.39 Aligned_cols=276 Identities=11% Similarity=-0.008 Sum_probs=135.8
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 321 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~- 321 (714)
..+.|+.+++++.+..-+........+-..+|......|. -+.+...+...+....... .+...+|.++...++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~---~~~A~~~l~~~l~~~P~~~--~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ---PDAVLQVVNKLLAVNVCQP--EDVLLVASVLLKSKQY 126 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC---HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCH
Confidence 3456888888888877765444444444445544555553 3447777777765322111 234566666666555
Q ss_pred HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH
Q 005098 322 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 322 ~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~ 400 (714)
++..+.+...+. ++. ..+ +-..+|.++...++.+-+...+..+....+. ....... + ..+...|+-+++
T Consensus 127 ~~Ai~~l~~Al~l~P~-~~~----a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~--~~~a~~~--~-~~l~~~g~~~eA 196 (656)
T PRK15174 127 ATVADLAEQAWLAFSG-NSQ----IFALHLRTLVLMDKELQAISLARTQAQEVPP--RGDMIAT--C-LSFLNKSRLPED 196 (656)
T ss_pred HHHHHHHHHHHHhCCC-cHH----HHHHHHHHHHHCCChHHHHHHHHHHHHhCCC--CHHHHHH--H-HHHHHcCCHHHH
Confidence 456666666664 332 122 4445666677777655444444333222211 1111111 1 235556776777
Q ss_pred HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHH-HHHHHHhhccccCCCCccccchhHHHHHHhhcccchh-hhhHHHH
Q 005098 401 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-LEMAIRS 478 (714)
Q Consensus 401 ~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~-~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~-~~~~~~~ 478 (714)
....+.+..... ..........+.++...|+.. +++.+-+.+..+.+ +......+|..+...|+.-. .+.+...
T Consensus 197 ~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 197 HDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD---GAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 666665443311 111111233456777888854 33333333322211 33333445666666666510 0135666
Q ss_pred HHHHHhcCCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc
Q 005098 479 LEHLLQYGEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 479 l~~L~~~~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~-~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
++..+.....+.+ +-..+|.++...+ ..++++.+.+.. .+|+.... ...+|.+....++
T Consensus 273 ~~~Al~l~P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a---~~~La~~l~~~G~ 333 (656)
T PRK15174 273 WRHALQFNSDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV---RAMYARALRQVGQ 333 (656)
T ss_pred HHHHHhhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCC
Confidence 6666554322222 2333444443333 456677777664 35554322 2334555444443
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=84.86 E-value=8.7 Score=33.93 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 005098 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 475 ~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~ 541 (714)
++.++ .+++++++.+|..++.+++-++.+++. ..+++.|.++++|++..|+..|+.+++-+..+..
T Consensus 9 i~~l~-~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 9 LPALV-SLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHH-HHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 34444 445677899999999999998876321 2456777888899999999999999999987654
No 67
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=40 Score=43.31 Aligned_cols=237 Identities=20% Similarity=0.212 Sum_probs=122.0
Q ss_pred HHHHHHHhccCCChHHHHHHHH-HHHHH-hccCCCH------hHHHHHHhhhcCCC-ChhHHHHHHHHHHHhHhcCCCC-
Q 005098 289 ALALLSEYVGREDACIRIGAIM-GLGIS-YAGTQND------QIRHKLSTILNDAK-SPLDVIAFSAISLGLIYVGSCN- 358 (714)
Q Consensus 289 ~~~lL~~~L~~~~~~v~~gA~l-GLGl~-y~Gs~~~------~i~e~L~~~l~d~~-~~~e~~~~AalaLGLi~lGs~~- 358 (714)
+...|...+.++++..|-+++. =|.++ |+|++.+ ++.+.....|.|++ .+.+ .|+=|||+|| +-|+
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QD---vAsrGlglVY-elgd~ 894 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQD---VASRGLGLVY-ELGDS 894 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHH---HHhcCceEEE-ecCCc
Confidence 3455666677888887776543 34443 7786644 55666666676543 3344 5889999998 4333
Q ss_pred ---HHHHHHHHHHHhhcC--ccccCch---hHhH-----------------HHHHHhHhhcCChhhHHHHHHHHhhchhh
Q 005098 359 ---EEVAQAIIFALMDRS--ESELGEP---LTRL-----------------IPLGLGLLYLGKQESVEATAEVSKTFNEK 413 (714)
Q Consensus 359 ---~~~~e~Ll~~L~~~~--~~~l~~~---~~r~-----------------a~l~lgLi~lG~~e~~~~ll~~L~~~~~~ 413 (714)
.+.++.|+.+|.+.. .+++.+. +..+ +.+|- -+|.++-+=..++.-++.---
T Consensus 895 ~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS---dl~qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 895 SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS---DLGQPDLVYKFMQLANHNATW 971 (1702)
T ss_pred hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh---hcCChHHHHHHHHHhhhhchh
Confidence 367888888887642 2222111 1111 11110 012222211112111111112
Q ss_pred hhhhhHHHHHHHHhhcCCCH------HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHH----HHHHHHH
Q 005098 414 IRKYCDMTLLSCAYAGTGNV------LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAI----RSLEHLL 483 (714)
Q Consensus 414 ~~r~~~~~~~glayaGtGn~------~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~----~~l~~L~ 483 (714)
..|.|+++..|-...-+|.. ..|-+|.+|=- +++..|+ .+..+|=-....++ +.++. +|++.|+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~y---DP~~~Vq-~aM~sIW~~Li~D~--k~~vd~y~neIl~eLL 1045 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQY---DPDKKVQ-DAMTSIWNALITDS--KKVVDEYLNEILDELL 1045 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhcc---CCcHHHH-HHHHHHHHHhccCh--HHHHHHHHHHHHHHHH
Confidence 33556665544333333331 12333444422 1211444 33334333333343 23444 3444443
Q ss_pred ---hcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHh-------hcCCchHHHHHH---HHHHHHHcC
Q 005098 484 ---QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-------SHDTDSEVAMAA---VISLGLIGS 538 (714)
Q Consensus 484 ---~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l-------~~D~~~~Vr~~A---iiAlGlV~a 538 (714)
.+.+.-||-+.|+||.-+--|-++.+..+.+-.+ +.|--+.||-+| .-+++-+.+
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999988876544 456666677554 344444444
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.97 E-value=8.6 Score=37.95 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=60.0
Q ss_pred cccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCC---CcHHHHHHHHHhhcCCchHHHHH
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN---PKVNVMDTLSRLSHDTDSEVAMA 528 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt---~~~~ai~~L~~l~~D~~~~Vr~~ 528 (714)
.+|..+++++|=++.+-|.--+.....+-..+++.+|.||+.+..++.-+-... .....+..+-..+.|+++.||..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 688889999997766666222333333444557889999999999988764321 23333233345568999999999
Q ss_pred HHHHHHHHcCC
Q 005098 529 AVISLGLIGSG 539 (714)
Q Consensus 529 AiiAlGlV~aG 539 (714)
|...+.-+...
T Consensus 83 A~~~~~e~~~~ 93 (178)
T PF12717_consen 83 ARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHh
Confidence 98888777665
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=83.07 E-value=1e+02 Score=36.08 Aligned_cols=253 Identities=10% Similarity=-0.036 Sum_probs=118.3
Q ss_pred chhhHHhhhhhccCCCchhHHHHHHHHHHHh-----cCCC---CChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Q 005098 249 VDSGLAQIDKYFHSTDNHVIAGALLGVGIVN-----CGIR---NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 320 (714)
Q Consensus 249 ~~~~l~~l~~yL~s~~~~~~~GAllaLGli~-----~G~~---~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 320 (714)
.++++..+.+.+.....+..+-+ ++|.+| .|.. .+.+.+...+...+.-...... +...+|.++...+
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~--~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYC--ALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--ALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHH--HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHcc
Confidence 45667777777654444444333 333322 1211 1134466666666653222222 2233455554444
Q ss_pred C-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh
Q 005098 321 N-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 398 (714)
Q Consensus 321 ~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e 398 (714)
+ ++..+.+...+. +++ +.+ +-+.+|.++.-.|+.+.+...+....+..+. ..... ...+..+...|+-+
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~~~-~~~~~~~~~~g~~e 423 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAAAG-ITKLWITYYHTGID 423 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---ChhhH-HHHHHHHHhccCHH
Confidence 4 455566665554 332 222 3455666666666655444444444333222 11111 12233355567766
Q ss_pred hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHH-HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHH
Q 005098 399 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIR 477 (714)
Q Consensus 399 ~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~-~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~ 477 (714)
++....+......+|-. ......+|.+|...|+.+ +.+.+.+...... ....+.-.++-+..+.. +.+..
T Consensus 424 eA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g---~~a~~ 494 (553)
T PRK12370 424 DAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEI-----TGLIAVNLLYAEYCQNS---ERALP 494 (553)
T ss_pred HHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHhccH---HHHHH
Confidence 66665554432211111 112345678888899954 4444444322211 12223333333333332 34555
Q ss_pred HHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHH
Q 005098 478 SLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEV 525 (714)
Q Consensus 478 ~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~V 525 (714)
.++.+.... .-+..-+.-+.++++.-|+.+--..+.++-++.+..+
T Consensus 495 ~l~~ll~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 540 (553)
T PRK12370 495 TIREFLESE--QRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHHh--hHhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHhh
Confidence 565554322 1222222225555665677777777766666555443
No 70
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=82.45 E-value=1.4 Score=29.61 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=21.7
Q ss_pred HHhhHHHHHhhhccCCCcHHHHHHHHHhhcC
Q 005098 490 IRRAVPLALGLLCISNPKVNVMDTLSRLSHD 520 (714)
Q Consensus 490 vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D 520 (714)
||+.++.+||-+ +++++++.|.+.++|
T Consensus 1 VR~~Aa~aLg~i----gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCHHHHHHHHHHhcC
Confidence 688999999988 778999988877654
No 71
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=81.78 E-value=2.4 Score=33.06 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=30.9
Q ss_pred cccchhHHHHHHhhcccch-hhhh---HHHHHHHHHhcCCHHHHhhHHHHHhh
Q 005098 452 AYQGPAVLGIAMVAMAEEL-GLEM---AIRSLEHLLQYGEQNIRRAVPLALGL 500 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~-~~~~---~~~~l~~L~~~~~~~vr~g~~lALGl 500 (714)
.+|+.|+.+||-+.-..+. .... +...+..++.+.++.||..++.|||-
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 3677777777765544331 1112 22333445577888999999999984
No 72
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.46 E-value=11 Score=35.13 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCChhhh-----HHHh---cccChHHHHHHHHHhcccCCCCCc-------HHHHHHH
Q 005098 4 VQEIVAFHMKHNAEPEAVDLLMEVEDLDLL-----VEHV---DATNFKRTCLYLTSAAKYLPGPDD-------MLVLDIA 68 (714)
Q Consensus 4 v~~iv~~~~~~n~e~~AvdlllE~~~ld~i-----~~~v---d~~~~~ri~~Yl~~~~~~~~~~~~-------~~vl~~~ 68 (714)
++++|+.+.+.|...+.+.++-.+-.-+.. ..++ -+.+-.++..|+.+....+ +++. ....+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~y-d~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHY-DIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccC-CHHHHHHHHHHcCcHHHH
Confidence 467888888888888888887664222110 0111 1233456666666322211 1111 1245556
Q ss_pred HHHHhccCCHHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHHH
Q 005098 69 YMIYLKFEEFPNALQIALFL-DNMQYVKQIFTSCDDLLRKKQFC 111 (714)
Q Consensus 69 ~~i~~~~~~~~~al~~al~l-~d~~~i~~i~~~~~d~~~~~Qla 111 (714)
.-+|.+.++|.+|+.++++- +|++...+.++++.|+..-.+++
T Consensus 89 ~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 89 VELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred HHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 67888899999999999987 89999999999887776555554
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=80.73 E-value=86 Score=33.67 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=76.6
Q ss_pred HHHHHhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCCh-hhHHHHHHHhccCCChHHHHHHHHHHHH
Q 005098 236 SAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-DPALALLSEYVGREDACIRIGAIMGLGI 314 (714)
Q Consensus 236 ~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~-d~~~~lL~~~L~~~~~~v~~gA~lGLGl 314 (714)
....++.....|+.+++.+.+.+.+.........-.+ ++.....|..... +.+...+.. .. +......-+..-+|.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~a~ 122 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WA-PENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cC-cCCCCcHHHHHHHHH
Confidence 3344455566788888888777776532222222222 3333333322211 112232322 21 111222222223344
Q ss_pred HhccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCch-hHhHHHHHHhH
Q 005098 315 SYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP-LTRLIPLGLGL 391 (714)
Q Consensus 315 ~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~-~~r~a~l~lgL 391 (714)
++...++ ++..+.+...+. ++.. . .+...+|.++...+..+-....++...+..+.. .+. ..-...++..+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~--~---~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~~ 196 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDD--A---WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC--c---HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHHH
Confidence 4444444 345666666554 2211 1 456777888887777655555554333221111 111 11122345556
Q ss_pred hhcCChhhHHHHHHHHh
Q 005098 392 LYLGKQESVEATAEVSK 408 (714)
Q Consensus 392 i~lG~~e~~~~ll~~L~ 408 (714)
...|+.+++...++...
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 66677777777777653
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.71 E-value=93 Score=33.45 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=98.1
Q ss_pred hcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhh-chhhhhhhhHHHHHHHHhhcCC
Q 005098 353 YVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKT-FNEKIRKYCDMTLLSCAYAGTG 431 (714)
Q Consensus 353 ~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~-~~~~~~r~~~~~~~glayaGtG 431 (714)
|.|-..++.+...+..+... ..-..++-+..++--|....+..++..... .++. ..+.+.++-.|..+|
T Consensus 113 F~G~qPesqlr~~ld~~~~~-------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g 182 (304)
T COG3118 113 FQGAQPESQLRQFLDKVLPA-------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAG 182 (304)
T ss_pred cCCCCcHHHHHHHHHHhcCh-------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcC
Confidence 56767776777666654322 112334445566666666666665554332 2211 233455667788899
Q ss_pred CHHHHHHHHhhccccCCCCccccchhHHH-HHHhhcccchhhhhHHHHHHHHHhc-CCHHHHhhHHHHHhhhccCCCcHH
Q 005098 432 NVLKVQNLLGHCAQHHEKGEAYQGPAVLG-IAMVAMAEELGLEMAIRSLEHLLQY-GEQNIRRAVPLALGLLCISNPKVN 509 (714)
Q Consensus 432 n~~~i~~LL~~~~~~~~~~~~vrr~avl~-lalI~~~~~~~~~~~~~~l~~L~~~-~~~~vr~g~~lALGl~~aGt~~~~ 509 (714)
.++..+.+|.....+..+ -++.++.+ |.++---... .....+.+.+..+ .|...|...+.. +.-.| -+..
T Consensus 183 ~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~~--~~~~~l~~~~aadPdd~~aa~~lA~~--~~~~g-~~e~ 254 (304)
T COG3118 183 DVEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAAT--PEIQDLQRRLAADPDDVEAALALADQ--LHLVG-RNEA 254 (304)
T ss_pred ChHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhCCCCHHHHHHHHHH--HHHcC-CHHH
Confidence 998889988886554432 12222222 3333111110 1123344444433 244544433333 32233 3455
Q ss_pred HHHHHHHhh----cCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhh
Q 005098 510 VMDTLSRLS----HDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 555 (714)
Q Consensus 510 ai~~L~~l~----~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~ 555 (714)
|.+.|..++ .+.|+.+|..-+--+.+ .|+.+|.+.+.+|+|++.
T Consensus 255 Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~--~g~~Dp~~~~~RRkL~sl 302 (304)
T COG3118 255 ALEHLLALLRRDRGFEDGEARKTLLELFEA--FGPADPLVLAYRRKLYSL 302 (304)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 666655443 34577788764444444 488889999999999875
No 75
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.60 E-value=22 Score=43.08 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=77.7
Q ss_pred HHHHHHHHhhccccCCCCccccchhHHHHHHh--hcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhh----hccCCC
Q 005098 433 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV--AMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL----LCISNP 506 (714)
Q Consensus 433 ~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI--~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl----~~aGt~ 506 (714)
...+.++|....++ += .+|+..+.++..+ .+|+++-.+.....+..+..|..|+||.+++-.+-- +.+..-
T Consensus 556 ~~~i~k~L~~~~q~-~y--~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~ 632 (759)
T KOG0211|consen 556 LEEIPKLLAMDLQD-NY--LVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR 632 (759)
T ss_pred HHhhHHHHHHhcCc-cc--chhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH
Confidence 44566667665543 11 4677777777765 357776667777788889999999999999887653 445566
Q ss_pred cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 507 KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 507 ~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
+..+..+|..+..|++-+||..|+.|.+.+..
T Consensus 633 ~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 77778888899999999999999999998864
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=78.52 E-value=3.5 Score=49.41 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 478 SLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 478 ~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
.+.+=+++.||.+|..+.=.|+.+-.+.=...+++.+.+..+|+++.||++|++|++-+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 344445788999999999999999777777778889999999999999999999998665
No 77
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=76.71 E-value=1.2e+02 Score=32.94 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCC------hhhHHHHHHHhccCCChHHHHH--HHHHHHHHhcc--CCCHhHHHHHHhh
Q 005098 262 STDNHVIAGALLGVGIVNCGIRND------CDPALALLSEYVGREDACIRIG--AIMGLGISYAG--TQNDQIRHKLSTI 331 (714)
Q Consensus 262 s~~~~~~~GAllaLGli~~G~~~e------~d~~~~lL~~~L~~~~~~v~~g--A~lGLGl~y~G--s~~~~i~e~L~~~ 331 (714)
......|..+|-++--+...+.-. ..+++..+...+...+..-+.- .+++|=.+-.| ...+++++.+.|.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~ 133 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPV 133 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Confidence 445677888887766555433211 1122333334444444333333 34555555555 4456787777766
Q ss_pred h----cCCCChhHHHHHHHHHHHhH-hcCCCCHHHHHHHHH
Q 005098 332 L----NDAKSPLDVIAFSAISLGLI-YVGSCNEEVAQAIIF 367 (714)
Q Consensus 332 l----~d~~~~~e~~~~AalaLGLi-~lGs~~~~~~e~Ll~ 367 (714)
| .|.......+..++.+||++ |+|..+.+.++.+++
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~ 174 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME 174 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Confidence 6 46544444434555577775 567777777774333
No 78
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.58 E-value=2.3e+02 Score=36.18 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=63.3
Q ss_pred HHHHHHHhhchhhhhhhhHH--HHHHHHhhcCC--CHHHHHHHHhhccccCCCCccccchhHHHHH----Hhhcccchhh
Q 005098 401 EATAEVSKTFNEKIRKYCDM--TLLSCAYAGTG--NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIA----MVAMAEELGL 472 (714)
Q Consensus 401 ~~ll~~L~~~~~~~~r~~~~--~~~glayaGtG--n~~~i~~LL~~~~~~~~~~~~vrr~avl~la----lI~~~~~~~~ 472 (714)
+.+...|..+++|+.|.+-. ++.=|.|.|-- |-....+|..|+++. + ...|.+-.=.|. +|+++.- .
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk-D--w~LR~aFfdsI~gvsi~VG~rs~--s 654 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK-D--WRLRGAFFDSIVGVSIFVGWRSV--S 654 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc-c--HHHHHHHHhhccceEEEEeeeeH--H
Confidence 33344455556666665322 34445666543 233455677777654 2 134444333443 3444421 1
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhc-cCCC-cHHHHHHH---HHhhcCCchHHHHHHH
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLC-ISNP-KVNVMDTL---SRLSHDTDSEVAMAAV 530 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~-aGt~-~~~ai~~L---~~l~~D~~~~Vr~~Ai 530 (714)
|-..-++++=+.+.+++|--.|--|+-.++ -|.= .+-++|.+ .+++-.|+.-+|++++
T Consensus 655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 334444444456677777666666665554 2332 22333333 3566777777887443
No 79
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.28 E-value=91 Score=36.69 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=90.1
Q ss_pred HHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHh
Q 005098 438 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 517 (714)
Q Consensus 438 ~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l 517 (714)
+|+..+.++.. .+||.|.-.+|+| ++-+|.+.+..++-.-+...+.+-|-+..+|+|+..--.|--.++.+|..=
T Consensus 734 eLvd~Lks~nK---eiRR~A~~tfG~I--s~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~d 808 (975)
T COG5181 734 ELVDSLKSWNK---EIRRNATETFGCI--SRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSD 808 (975)
T ss_pred HHHHHHHHhhH---HHHHhhhhhhhhH--HhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhc
Confidence 34444444433 7899999999998 466776777776655556677889999999999887666777777766555
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCCchH---HHHHHHHHHh-hhccChhH-----HHHHHHHHhhhhcCCCcc
Q 005098 518 SHDTDSEVAMAAVISLGLIGSGTNNAR---IAGMLRNLSS-YYYKDANL-----LFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 518 ~~D~~~~Vr~~AiiAlGlV~aGt~n~r---v~~~lr~l~~-~~~~d~~~-----~~~~~lA~Gll~~G~g~~ 580 (714)
-..|+.+|.++.+=||.+..--+++.. |-.+.--|.- ..-+||.. -.-.|+++| |-|.|..
T Consensus 809 Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln--c~gtg~e 878 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN--CPGTGDE 878 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC--CCCcccH
Confidence 567899999999999998765444421 1112222221 11355532 244577777 7777764
No 80
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=74.67 E-value=50 Score=34.73 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHH------HHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM------DTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai------~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
+...+++..|-...||.++.-+.+++|...+-+.+.+++ ..+..++++|++.||..|+-|+.-.-....|
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 455555555544678999999999999987767666665 4567888999999999888888866554444
No 81
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=74.25 E-value=4.5 Score=27.48 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=23.7
Q ss_pred HHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCC
Q 005098 489 NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 521 (714)
Q Consensus 489 ~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~ 521 (714)
.||+.++.+||-+ +++++++.|..+++|+
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcCC
Confidence 5888999999976 7788888888887764
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.32 E-value=8.9 Score=47.05 Aligned_cols=87 Identities=29% Similarity=0.294 Sum_probs=66.7
Q ss_pred cccchhHHHHHHhhcccchhhhhHHH-----H-HHHHHhc-CCHHHHhhHHHHHhhhccCC-------CcHHHHHHHHHh
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIR-----S-LEHLLQY-GEQNIRRAVPLALGLLCISN-------PKVNVMDTLSRL 517 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~-----~-l~~L~~~-~~~~vr~g~~lALGl~~aGt-------~~~~ai~~L~~l 517 (714)
+.|..++.-+|-|.-+-+.|++.+.. + +++| .+ .+|-.|.=+|++||.+..-. -...|.+.|..+
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 56778888888888887778766543 2 2333 34 36899999999999997543 234567889999
Q ss_pred hcCCchHHHHHHHHHHHHHcCC
Q 005098 518 SHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 518 ~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
++|+..+||-+|++|||-..-+
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcc
Confidence 9999999999999999966553
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=71.49 E-value=6.3 Score=27.11 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHhhHHHHHhhh
Q 005098 478 SLEHLLQYGEQNIRRAVPLALGLL 501 (714)
Q Consensus 478 ~l~~L~~~~~~~vr~g~~lALGl~ 501 (714)
.+-+++++.++.||.+++.|+|-+
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345667889999999999999965
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=70.46 E-value=14 Score=32.84 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=48.3
Q ss_pred HHhhHHHHHhhhccCCCcH------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHhhhc-cC
Q 005098 490 IRRAVPLALGLLCISNPKV------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN---ARIAGMLRNLSSYYY-KD 559 (714)
Q Consensus 490 vr~g~~lALGl~~aGt~~~------~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n---~rv~~~lr~l~~~~~-~d 559 (714)
-|+|+-++|+-...|-+.. ++++.+.....|+|.-||..|.-|+.-+.--..+ +...+++..|.+... .|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778777777766555543 2233334456899999999999999887654433 122333344444322 35
Q ss_pred hhHHHHHHH
Q 005098 560 ANLLFCVRI 568 (714)
Q Consensus 560 ~~~~~~~~l 568 (714)
++++.++.+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 677777754
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=2.7e+02 Score=33.95 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=62.6
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhcCCCCChhh-HHHHHHHhccCCChHHHHHHHHHHHHHhccCCC--HhHHHHHHhhh
Q 005098 256 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP-ALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLSTIL 332 (714)
Q Consensus 256 l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~-~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--~~i~e~L~~~l 332 (714)
+.+-|.++++-+|+.||-.+.-|..-.. -| ++....+...+.+++||..|+.++=-.|.--.+ .++.+.+...|
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRvp~I---aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL 189 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRVPMI---APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL 189 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh
Confidence 4455778899999999999987754322 22 334456778889999999999999988854332 35666666666
Q ss_pred cCCCChhHHHHHHHHHHHhH
Q 005098 333 NDAKSPLDVIAFSAISLGLI 352 (714)
Q Consensus 333 ~d~~~~~e~~~~AalaLGLi 352 (714)
.|.+ .-+..+|.+|.--+
T Consensus 190 aD~s--plVvgsAv~AF~ev 207 (968)
T KOG1060|consen 190 ADRS--PLVVGSAVMAFEEV 207 (968)
T ss_pred cCCC--CcchhHHHHHHHHh
Confidence 7753 34444666665443
No 86
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.91 E-value=36 Score=38.83 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCChHHHH----------HHHHhcCChhhhHHHhcccChHHHHHHHHHhcccCCCCCcHHHHHHHHHHHh
Q 005098 4 VQEIVAFHMKHNAEPEAV----------DLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYL 73 (714)
Q Consensus 4 v~~iv~~~~~~n~e~~Av----------dlllE~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~ 73 (714)
-+++..|+.++|-...|+ +|||++.++|.=.++.++.+....-.-|-..+... - =++++-+.|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~---g---~~~lAe~c~~ 371 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQ---G---NIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHT---T---BHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHc---C---CHHHHHHHHH
Confidence 356777888888777776 67888888877776666555443333333333211 1 1233445556
Q ss_pred ccCCHHHHHHHHHhcCChhHHHHHHhhc---chHHHHHHHHHHHh
Q 005098 74 KFEEFPNALQIALFLDNMQYVKQIFTSC---DDLLRKKQFCYILA 115 (714)
Q Consensus 74 ~~~~~~~al~~al~l~d~~~i~~i~~~~---~d~~~~~Qlaf~la 115 (714)
+.++|...+-+..-.+|.+.++++-+.+ .|..++.|.+|.++
T Consensus 372 k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lg 416 (443)
T PF04053_consen 372 KAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLG 416 (443)
T ss_dssp HCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT
T ss_pred hhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcC
Confidence 6666776666777777777777766654 24556666666554
No 87
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=68.76 E-value=62 Score=31.83 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC---CHhHHHHHHhhhcCCCChhH
Q 005098 264 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ---NDQIRHKLSTILNDAKSPLD 340 (714)
Q Consensus 264 ~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~---~~~i~e~L~~~l~d~~~~~e 340 (714)
++.+|..++.++|=...-+.+-.|+.+..+...|.++++.+|..|++.|.-....-. +..++..+...+.|+ +.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHH
Confidence 356788999999955444445567788888899999999999999998876544321 334534444566675 445
Q ss_pred HHHHHHHHHHhHhcC
Q 005098 341 VIAFSAISLGLIYVG 355 (714)
Q Consensus 341 ~~~~AalaLGLi~lG 355 (714)
++..|...+.-+..-
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 655676666655443
No 88
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.16 E-value=38 Score=40.22 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=37.6
Q ss_pred hcCCHHHHhhHHHHHhhhc--cCCCcHHHHHHHHHhh-cCCchHHHHHHHH
Q 005098 484 QYGEQNIRRAVPLALGLLC--ISNPKVNVMDTLSRLS-HDTDSEVAMAAVI 531 (714)
Q Consensus 484 ~~~~~~vr~g~~lALGl~~--aGt~~~~ai~~L~~l~-~D~~~~Vr~~Aii 531 (714)
-+.+|.||.-|-+||.-.- .+.++-++..+|..+. +||+++||++|+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4678999999999998654 4556677888887765 7999999996544
No 89
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.81 E-value=38 Score=38.64 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=67.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhcCChhh----------------hHHHhcccChHHHHHHHHHhcccCCCCCcHHHHHHHH
Q 005098 6 EIVAFHMKHNAEPEAVDLLMEVEDLDL----------------LVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAY 69 (714)
Q Consensus 6 ~iv~~~~~~n~e~~AvdlllE~~~ld~----------------i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~ 69 (714)
.=|+..++-|+...|.++|-+.++-++ -++.....+.-.-+++|..+.. +.+-|+.+.
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g------~~~~L~kl~ 396 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTG------DREKLSKLA 396 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-------HHHHHHHH
T ss_pred HHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhC------CHHHHHHHH
Confidence 346777889999999999888775333 3333333222222334444443 236677778
Q ss_pred HHHhccCCHHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHHHHhhh
Q 005098 70 MIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARH 117 (714)
Q Consensus 70 ~i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq 117 (714)
+++.+.+++--++.+++.+||.+...+++.+++ +...|+..||.
T Consensus 397 ~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~t 440 (443)
T PF04053_consen 397 KIAEERGDINIAFQAALLLGDVEECVDLLIETG----RLPEAALFART 440 (443)
T ss_dssp HHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHHh
Confidence 999999999999999999999999999999753 45567777764
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.27 E-value=62 Score=37.97 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=106.7
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCCCChhh---HHH---HHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhh
Q 005098 258 KYFHSTDNHVIAGALLGVGIVNCGIRNDCDP---ALA---LLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI 331 (714)
Q Consensus 258 ~yL~s~~~~~~~GAllaLGli~~G~~~e~d~---~~~---lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~ 331 (714)
+-|.+.+.-+.+..+.-+|.|..... +--+ .+. -|.+.|.+.+..+|..|.-.+|.+.-.-+..|++..|+.-
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~p-eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Llnn 773 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSP-EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNN 773 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhc
Confidence 33446777777777777888865432 2111 222 2345566667789999999999998777788999999887
Q ss_pred hcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhh-------HHHHH
Q 005098 332 LNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES-------VEATA 404 (714)
Q Consensus 332 l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~-------~~~ll 404 (714)
|.-.+-..++ ..++|+|.+.-=.+-- ..+.+||...+|. ...+..+.-=+++++|=-.+++ +-.++
T Consensus 774 LkvqeRq~Rv--ctsvaI~iVae~cgpf----sVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy~itPll 846 (975)
T COG5181 774 LKVQERQQRV--CTSVAISIVAEYCGPF----SVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLL 846 (975)
T ss_pred chHHHHHhhh--hhhhhhhhhHhhcCch----hhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7522112234 4566666653111211 2445555544443 2223333333555555333332 33345
Q ss_pred HHHhhchhhhhhhhHHH---HHHHHhhcCCCHHHHHHHHhhcccc
Q 005098 405 EVSKTFNEKIRKYCDMT---LLSCAYAGTGNVLKVQNLLGHCAQH 446 (714)
Q Consensus 405 ~~L~~~~~~~~r~~~~~---~~glayaGtGn~~~i~~LL~~~~~~ 446 (714)
+.-..+.||+-|..++- -+.+..-|||++++.=+||..+-..
T Consensus 847 eDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpN 891 (975)
T COG5181 847 EDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPN 891 (975)
T ss_pred HhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhh
Confidence 54455677877776553 2345577999999888888776543
No 91
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.12 E-value=2.3e+02 Score=34.24 Aligned_cols=137 Identities=17% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC----CHhHHHHHHhhhcCCCC
Q 005098 262 STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ----NDQIRHKLSTILNDAKS 337 (714)
Q Consensus 262 s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~----~~~i~e~L~~~l~d~~~ 337 (714)
++++.+|+-|+=.+|.+.-+... +-+..-|...+.+.++++|..+..+....|--.. +..+.+.|...+.|++
T Consensus 97 d~np~iR~lAlrtm~~l~v~~i~--ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~- 173 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVDKIT--EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSN- 173 (734)
T ss_pred CCCHHHHHHHhhceeeEeehHHH--HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCC-
Confidence 56777887777766665433221 1234445567788899999999888887664433 2356778888887653
Q ss_pred hhHHHHHHHHHHHhHhcCCC-------CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh-hhHHHHHHHHh
Q 005098 338 PLDVIAFSAISLGLIYVGSC-------NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-ESVEATAEVSK 408 (714)
Q Consensus 338 ~~e~~~~AalaLGLi~lGs~-------~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~-e~~~~ll~~L~ 408 (714)
..++.-|.=||-.|.--+. +.+.+..++..+.+ -..|.+...+-.-.-+.-+. ..++.+++.+.
T Consensus 174 -p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e------c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~ 245 (734)
T KOG1061|consen 174 -PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE------CTEWGQIFILDCLAEYVPKDSREAEDICERLT 245 (734)
T ss_pred -chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH------hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence 3443334445555543332 12334444443322 23466665553333333222 35666665543
No 92
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.98 E-value=66 Score=35.50 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHhhHHHHHhhhccCC--------CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 005098 479 LEHLLQYGEQNIRRAVPLALGLLCISN--------PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 479 l~~L~~~~~~~vr~g~~lALGl~~aGt--------~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~ 541 (714)
+-.++.++|+.+||-++-|++.+..-. .-++++..|-.++.|+++-|+..|-.|++.+.+.|.
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence 445568899999999999999886432 234567788889999999999999999999988876
No 93
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=58.43 E-value=39 Score=33.82 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHH
Q 005098 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRN 551 (714)
Q Consensus 475 ~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~ 551 (714)
....+...+++.++.+|+.++.++--....+.-....+.+...++|++.+|+.+.--+|.-+ |..+| .+.++|++
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~--~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREI--GKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHH--CTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHH--HHhCHHHHHHHHHH
Confidence 55666777788999999998877754444444456667778888999999998754444444 44443 56667766
No 94
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.23 E-value=1.1e+02 Score=38.37 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhcCChhh--------------hHHHhcc-cChHHHHHHHHHhc
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDL--------------LVEHVDA-TNFKRTCLYLTSAA 53 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~--------------i~~~vd~-~~~~ri~~Yl~~~~ 53 (714)
.||-..+..++..++|.+|..+ ++..|+|+ ++.+|++ .+..-++++|.++.
T Consensus 695 ~LVL~~ir~~Ld~~~Y~~Af~~-~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~ 760 (928)
T PF04762_consen 695 ALVLAGIRKLLDAKDYKEAFEL-CRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLR 760 (928)
T ss_pred hHHHHHHHHHHhhccHHHHHHH-HHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 5788889999999999999875 56666533 5556665 44466777776665
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.51 E-value=48 Score=41.01 Aligned_cols=111 Identities=17% Similarity=0.295 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhc----C----ChhhhHHHhc-c-------------------cChHHHHHHHHHhc
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEV----E----DLDLLVEHVD-A-------------------TNFKRTCLYLTSAA 53 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~----~----~ld~i~~~vd-~-------------------~~~~ri~~Yl~~~~ 53 (714)
+|+++.|.--+..-.-+|.|-+.+.+ + =|+.++++|- . ..-.||..|+-..-
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhc
Confidence 46677777666666666666655442 2 2566666652 1 11258999999888
Q ss_pred ccCCCCCc-----HHHHHHHHHHHhccCCHHHHHHHHHh-cCChhHHHHHHhhcchHHHHHHHHH
Q 005098 54 KYLPGPDD-----MLVLDIAYMIYLKFEEFPNALQIALF-LDNMQYVKQIFTSCDDLLRKKQFCY 112 (714)
Q Consensus 54 ~~~~~~~~-----~~vl~~~~~i~~~~~~~~~al~~al~-l~d~~~i~~i~~~~~d~~~~~Qlaf 112 (714)
+|-.+.-. .++++-++.||.|++-+.+|+++.|+ .++.|..-+.-.+|+.|.+-.|+|=
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAK 1112 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHH
Confidence 87655322 26899999999999999999999987 4888999898889999988888873
No 96
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.08 E-value=77 Score=36.86 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhcCCCHHHHHHHHh-----hccccCCCCccccchhHHHHHHh--hcccch---hhhhHHHHHHHHHhcCCHHHHhhHHH
Q 005098 427 YAGTGNVLKVQNLLG-----HCAQHHEKGEAYQGPAVLGIAMV--AMAEEL---GLEMAIRSLEHLLQYGEQNIRRAVPL 496 (714)
Q Consensus 427 yaGtGn~~~i~~LL~-----~~~~~~~~~~~vrr~avl~lalI--~~~~~~---~~~~~~~~l~~L~~~~~~~vr~g~~l 496 (714)
|.-.|+...|++++. |+.+... ..|++..+|+|-+ +.|.+. -...++.++.-+ ++.|..|||-+|-
T Consensus 31 l~~~~~~~~i~k~I~~L~~d~a~s~~~---n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf-~D~d~~vRyyACE 106 (675)
T KOG0212|consen 31 LVNNNDYDQIRKVISELAGDYAYSPHA---NMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF-SDQDSQVRYYACE 106 (675)
T ss_pred HHccCcHHHHHHHHHHHHHHhccCccc---ccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc-cCccceeeeHhHH
Q ss_pred HH---hhhccCC---CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-------hHHHHHHHHHHhhhccChhHH
Q 005098 497 AL---GLLCISN---PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-------ARIAGMLRNLSSYYYKDANLL 563 (714)
Q Consensus 497 AL---Gl~~aGt---~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n-------~rv~~~lr~l~~~~~~d~~~~ 563 (714)
++ +-++=|. .-+++.|.|.+++.|+|..||-+|=+-=.++-.=-.. +.+..+||. ..|-.+|++|
T Consensus 107 sLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~e--riy~~n~~tR 184 (675)
T KOG0212|consen 107 SLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRE--RIYVINPMTR 184 (675)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHH--HHhcCCchHH
Q ss_pred HHH
Q 005098 564 FCV 566 (714)
Q Consensus 564 ~~~ 566 (714)
..+
T Consensus 185 ~fl 187 (675)
T KOG0212|consen 185 QFL 187 (675)
T ss_pred HHH
No 97
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=56.84 E-value=63 Score=31.05 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHcCCChHHHHHHHH-hcCChhhhHHHhc-------------ccChHHHHHHHHHhcccCCCCCcH----HHHHHHH
Q 005098 8 VAFHMKHNAEPEAVDLLM-EVEDLDLLVEHVD-------------ATNFKRTCLYLTSAAKYLPGPDDM----LVLDIAY 69 (714)
Q Consensus 8 v~~~~~~n~e~~Avdlll-E~~~ld~i~~~vd-------------~~~~~ri~~Yl~~~~~~~~~~~~~----~vl~~~~ 69 (714)
++.++++-+|.+|+|.++ ...+-+.+...+. .-+-..+..-|.=++++..+|+-+ .+..+++
T Consensus 25 ~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~il 104 (148)
T PF09384_consen 25 YDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRILVDVANIIL 104 (148)
T ss_pred HHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 577899999999999999 5555444444332 223334444445556777788775 4667777
Q ss_pred HHHhc
Q 005098 70 MIYLK 74 (714)
Q Consensus 70 ~i~~~ 74 (714)
++|..
T Consensus 105 diY~~ 109 (148)
T PF09384_consen 105 DIYSP 109 (148)
T ss_pred HHHHH
Confidence 77764
No 98
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=56.28 E-value=5.2e+02 Score=32.71 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHHHHh----cCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhc---CCchHHHHHHHHHHHHHcC
Q 005098 475 AIRSLEHLLQ----YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 475 ~~~~l~~L~~----~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~---D~~~~Vr~~AiiAlGlV~a 538 (714)
...++++|.. ..|+.+|.-++.||.-+.--+|..-+-..|-++.. -++...|.++.+|.|-|-.
T Consensus 541 ~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 541 REPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 4455666543 36889999999999886655555544334444433 3466778888888876643
No 99
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=53.18 E-value=2.3e+02 Score=27.75 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCHHHHhhHHHHHhhhccC-CCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 005098 477 RSLEHLLQYGEQNIRRAVPLALGLLCIS-NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLS 553 (714)
Q Consensus 477 ~~l~~L~~~~~~~vr~g~~lALGl~~aG-t~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~ 553 (714)
+.+...+.+.++.+|+.+..++.-.+.. +--...++.+..+.+|.+.+|+.+.--+|.-++.. .-.++..+++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~~~ 184 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEKNG 184 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 5677777888999999888777654443 45566778888889999999998765555555443 2235666666643
No 100
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=53.11 E-value=5.1e+02 Score=31.69 Aligned_cols=168 Identities=10% Similarity=0.039 Sum_probs=94.3
Q ss_pred HHHhHhhcCChhhHHHHHHHHhhchhhh--hhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCC------------C-c
Q 005098 387 LGLGLLYLGKQESVEATAEVSKTFNEKI--RKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEK------------G-E 451 (714)
Q Consensus 387 l~lgLi~lG~~e~~~~ll~~L~~~~~~~--~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~------------~-~ 451 (714)
+|..++..|+.+++...++.+...+... ........++.++.-.|+.....+.+.-+.+...+ + .
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 4667777888888888877765432111 11122334556778888866555444433322110 0 0
Q ss_pred cccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhh-cCCchHHHHHH
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLS-HDTDSEVAMAA 529 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~-~D~~~~Vr~~A 529 (714)
........+-.+...++. +.+.+.++.+......+ ..+-+.+|.++...+ ..++++.|.+.. .+|++.- +
T Consensus 358 ~~~a~~~~a~~l~~~g~~---~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~---l 429 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDL---PQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN---L 429 (765)
T ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH---H
Confidence 112234556666666776 77888888876543222 234455555554444 355666777665 4666521 3
Q ss_pred HHHHHHHcCCCCc-hHHHHHHHHHHhhhccChhH
Q 005098 530 VISLGLIGSGTNN-ARIAGMLRNLSSYYYKDANL 562 (714)
Q Consensus 530 iiAlGlV~aGt~n-~rv~~~lr~l~~~~~~d~~~ 562 (714)
.+++|++..+.++ .+...+++++.+..-.|+.+
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4666777777665 34556777777665556543
No 101
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.19 E-value=1.1e+02 Score=35.49 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=59.9
Q ss_pred HHHHHHHcCCChHHHHHHHHhcCC----------hhhhHHHhcc-c-ChHHHHHHHHHh-cccCCCCCc----------H
Q 005098 6 EIVAFHMKHNAEPEAVDLLMEVED----------LDLLVEHVDA-T-NFKRTCLYLTSA-AKYLPGPDD----------M 62 (714)
Q Consensus 6 ~iv~~~~~~n~e~~AvdlllE~~~----------ld~i~~~vd~-~-~~~ri~~Yl~~~-~~~~~~~~~----------~ 62 (714)
+++..++++++..+|+.++...+= +-.|-+++=. . +.+|= .++.+. -.++.+.+- .
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere-~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPERE-AQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 577789999999999999988542 4444444322 1 33332 223332 333322211 0
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhh
Q 005098 63 ---LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTS 100 (714)
Q Consensus 63 ---~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~ 100 (714)
...+..+.-.++.++|..|+..|+.+++.|+.-|+.-.
T Consensus 492 ~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~ 532 (545)
T PF11768_consen 492 PVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYL 532 (545)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHH
Confidence 23333444445678999999999999999999998874
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.38 E-value=47 Score=39.78 Aligned_cols=103 Identities=18% Similarity=0.274 Sum_probs=72.1
Q ss_pred HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC----cHH
Q 005098 434 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----KVN 509 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~----~~~ 509 (714)
.++..+++-|.+.. +.+|..|+=.++.+-..+-+ +...+-+...+++.+|.+|+.++++.+-++-=++ ...
T Consensus 86 ~avnt~~kD~~d~n---p~iR~lAlrtm~~l~v~~i~--ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPN---PLIRALALRTMGCLRVDKIT--EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred hhhhhhhccCCCCC---HHHHHHHhhceeeEeehHHH--HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc
Confidence 34555666664332 25666666666666555432 3444445555688899999999999988875443 334
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 005098 510 VMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 510 ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~ 541 (714)
.++.|..++.|.++.|-.+|+-|+.-+...++
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 57889999999999999999999999987765
No 103
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.21 E-value=28 Score=41.05 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=69.8
Q ss_pred chh-HHHHHHHhhhhhcccchh----hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhh----HHHHHHHhccCCC
Q 005098 231 EHG-KMSAAASLGMILLWDVDS----GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP----ALALLSEYVGRED 301 (714)
Q Consensus 231 ~~~-~~~a~aslGlI~~~~~~~----~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~----~~~lL~~~L~~~~ 301 (714)
+|. |-..+|+|++.-.---++ .+-+|++.|.++.=.+|-++++|+|.|.-|-++-+-| .+.+|.+.|.++.
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk 447 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK 447 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc
Confidence 453 444556677654322233 3334555566656668889999999998876544322 4566667778888
Q ss_pred hHHHHHHHHHHHH----HhccCCCHh---HHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 005098 302 ACIRIGAIMGLGI----SYAGTQNDQ---IRHKLSTILNDAKSPLDVIAFSAISLGLI 352 (714)
Q Consensus 302 ~~v~~gA~lGLGl----~y~Gs~~~~---i~e~L~~~l~d~~~~~e~~~~AalaLGLi 352 (714)
+.+|.-.|--|+= +..-+.++- +.+-|+..+.|++ ..++-+|+.|..-+
T Consensus 448 plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N--K~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN--KKVQEAACSAFATL 503 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 8888877766663 111122222 2333333334754 34555777777654
No 104
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=51.11 E-value=2e+02 Score=31.38 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCChHHHHHHH------------------HhcCChhhhHHHhcc----cChHHHHHHHHHhcc------c
Q 005098 4 VQEIVAFHMKHNAEPEAVDLL------------------MEVEDLDLLVEHVDA----TNFKRTCLYLTSAAK------Y 55 (714)
Q Consensus 4 v~~iv~~~~~~n~e~~Avdll------------------lE~~~ld~i~~~vd~----~~~~ri~~Yl~~~~~------~ 55 (714)
+.+.+..|+.+|...+|-.+. .+.++.|.|+++-.+ ..|.-....|+..-+ |
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 456778888999888886664 456666666666432 223333333332211 1
Q ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhhcc
Q 005098 56 LPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCD 102 (714)
Q Consensus 56 ~~~~~~~~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~ 102 (714)
.+.-. - +--++.|.+.++|.+|...|.+..|.+.+.++.+.|.
T Consensus 260 I~k~~---~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 260 IPKIP---D-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HHhCC---h-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 11000 1 2234678899999999999999999999999999884
No 105
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.95 E-value=5.7e+02 Score=31.02 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCccccCchhHhHHHHH-HhHhhcCC----hhhHHHHHHHHh-h--chhhhhhhhHHHHHHHHhhcCC
Q 005098 360 EVAQAIIFALMDRSESELGEPLTRLIPLG-LGLLYLGK----QESVEATAEVSK-T--FNEKIRKYCDMTLLSCAYAGTG 431 (714)
Q Consensus 360 ~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~-lgLi~lG~----~e~~~~ll~~L~-~--~~~~~~r~~~~~~~glayaGtG 431 (714)
+.+..++..+....++ +++-+|+=++- ++++.=.. .+..+.+.+.+. . +.+|..|-.++++++-----++
T Consensus 81 DlV~~~f~hlLRg~Es--kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTES--KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 4666677666654444 56667775553 35444211 123334444333 1 3568888888777643222233
Q ss_pred C--HHHHHHHHhhccccCCCCccccchhHHHHH
Q 005098 432 N--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIA 462 (714)
Q Consensus 432 n--~~~i~~LL~~~~~~~~~~~~vrr~avl~la 462 (714)
| ..++.-+......|.++ .|||++.+.|.
T Consensus 159 dee~~v~n~l~~liqnDpS~--EVRRaaLsnI~ 189 (892)
T KOG2025|consen 159 DEECPVVNLLKDLIQNDPSD--EVRRAALSNIS 189 (892)
T ss_pred CCcccHHHHHHHHHhcCCcH--HHHHHHHHhhc
Confidence 3 45677777777777665 89999887665
No 106
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=47.32 E-value=5.1e+02 Score=30.02 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred HHHhcCCHHHHhhHHHHHhhhccCCCcHHHH---------HHHHHh---hcCCchHHHHHHHHHHHHHcCCCC---chHH
Q 005098 481 HLLQYGEQNIRRAVPLALGLLCISNPKVNVM---------DTLSRL---SHDTDSEVAMAAVISLGLIGSGTN---NARI 545 (714)
Q Consensus 481 ~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai---------~~L~~l---~~D~~~~Vr~~AiiAlGlV~aGt~---n~rv 545 (714)
.+.++.|+..+-.|.=++|.++..+--..++ ..|..+ .+....++|..++=|++.+..... +.++
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 3346788999988888999987443222222 112222 334556788888888888853322 3466
Q ss_pred HHHHHHHHhhhccChhHH
Q 005098 546 AGMLRNLSSYYYKDANLL 563 (714)
Q Consensus 546 ~~~lr~l~~~~~~d~~~~ 563 (714)
..+.+......+.+|...
T Consensus 377 ~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 377 LSITESWYESLSGSPLSN 394 (503)
T ss_pred HHHHHHHHHHhcCCchHH
Confidence 666777666666777654
No 107
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=46.57 E-value=71 Score=38.32 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=95.6
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCChhhH---HH---HHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCC
Q 005098 262 STDNHVIAGALLGVGIVNCGIRNDCDPA---LA---LLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA 335 (714)
Q Consensus 262 s~~~~~~~GAllaLGli~~G~~~e~d~~---~~---lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~ 335 (714)
+.++-+...-+-=+|.|.... .|--++ +. -|.+.|.+.+..+|..|.-.+|.+.-.-+..|++..|++-|.-.
T Consensus 894 nrheKVqen~IdLvg~Iadrg-pE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvq 972 (1172)
T KOG0213|consen 894 NRHEKVQENCIDLVGTIADRG-PEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQ 972 (1172)
T ss_pred hhHHHHHHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHH
Confidence 445555555555556554321 111111 11 13344455566788899999999987777789999998877521
Q ss_pred CChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh-------hHHHHHHHHh
Q 005098 336 KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-------SVEATAEVSK 408 (714)
Q Consensus 336 ~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e-------~~~~ll~~L~ 408 (714)
+-..++ ...+|++.+. -+|.. =..+..||....+. .-.+.-+.-=+++++|=-.++ .+-.+++.-.
T Consensus 973 eRq~Rv--cTtvaIaIVa-E~c~p---FtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAl 1045 (1172)
T KOG0213|consen 973 ERQNRV--CTTVAIAIVA-ETCGP---FTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDAL 1045 (1172)
T ss_pred HHHhch--hhhhhhhhhh-hhcCc---hhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhh
Confidence 112234 3555666553 22222 12344455433332 222333333355555533333 2333444334
Q ss_pred hchhhhhhhhHHH---HHHHHhhcCCCHHHHHHHHhhcccc
Q 005098 409 TFNEKIRKYCDMT---LLSCAYAGTGNVLKVQNLLGHCAQH 446 (714)
Q Consensus 409 ~~~~~~~r~~~~~---~~glayaGtGn~~~i~~LL~~~~~~ 446 (714)
.+.|++-|..++- =+++...|+|.+++.-+||.+.=..
T Consensus 1046 mDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1046 MDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPN 1086 (1172)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhh
Confidence 4556776665442 2345567999999999999887543
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=45.72 E-value=1.5e+02 Score=26.14 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=50.7
Q ss_pred HhhhhhccCCCchhHHHHHHHHHHHhcCCC---CChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHh
Q 005098 254 AQIDKYFHSTDNHVIAGALLGVGIVNCGIR---NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLST 330 (714)
Q Consensus 254 ~~l~~yL~s~~~~~~~GAllaLGli~~G~~---~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~ 330 (714)
...-.++.++..++|+.++.-|.-.-.... -..+.++.++...|.++++++=..|+=||....-- ..++++..|..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~-~p~~vl~~L~~ 84 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR-HPDEVLPILLD 84 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH-ChHHHHHHHHH
Confidence 334455667778889888887764433221 12234667777888888888888888887764322 22347777665
Q ss_pred hhcC
Q 005098 331 ILND 334 (714)
Q Consensus 331 ~l~d 334 (714)
...|
T Consensus 85 ~y~~ 88 (92)
T PF10363_consen 85 EYAD 88 (92)
T ss_pred HHhC
Confidence 5443
No 109
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.64 E-value=6.6e+02 Score=30.82 Aligned_cols=254 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHhccCCCHhHHHHHHhhhc-CCCChhHH-HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHH
Q 005098 312 LGISYAGTQNDQIRHKLSTILN-DAKSPLDV-IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGL 389 (714)
Q Consensus 312 LGl~y~Gs~~~~i~e~L~~~l~-d~~~~~e~-~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~l 389 (714)
||..-.=.-+.|+.-+|.+.+. |-..+... .+.|.-++|.++ ++|++.++.....+--... ++-+++=|+++.
T Consensus 92 LaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~----s~EmardlapeVe~Ll~~~-~~~irKKA~Lca 166 (866)
T KOG1062|consen 92 LAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC----SPEMARDLAPEVERLLQHR-DPYIRKKAALCA 166 (866)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCC-CHHHHHHHHHHH
Q ss_pred hHhhcCChhhHHHHH-----------------------HHHhhchhhhhhh-----------------------------
Q 005098 390 GLLYLGKQESVEATA-----------------------EVSKTFNEKIRKY----------------------------- 417 (714)
Q Consensus 390 gLi~lG~~e~~~~ll-----------------------~~L~~~~~~~~r~----------------------------- 417 (714)
-=+-..-++.++-.+ +.|+..++.+..|
T Consensus 167 ~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~ 246 (866)
T KOG1062|consen 167 VRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGIS 246 (866)
T ss_pred HHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCC
Q ss_pred ----hHHHHHHHHhhcCCC-------HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcC
Q 005098 418 ----CDMTLLSCAYAGTGN-------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYG 486 (714)
Q Consensus 418 ----~~~~~~glayaGtGn-------~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~ 486 (714)
..-+.--+...|.|+ .++..+...-+.+..+--..+---+|..|-=|-...+.. +.+..++.+++...
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr-vlainiLgkFL~n~ 325 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR-VLAINILGKFLLNR 325 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH-HHHHHHHHHHhcCC
Q ss_pred CHHHHhhHHHHHhhhccCCCcHHHHH--HHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHH
Q 005098 487 EQNIRRAVPLALGLLCISNPKVNVMD--TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLF 564 (714)
Q Consensus 487 ~~~vr~g~~lALGl~~aGt~~~~ai~--~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~ 564 (714)
+-++||-+-=+|.-.--..++.--.- +....++|||...|+ =||-+..+=+|...|..+.++|-.|.++- +..|
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkr---ralELs~~lvn~~Nv~~mv~eLl~fL~~~-d~~~ 401 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKR---RALELSYALVNESNVRVMVKELLEFLESS-DEDF 401 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHHhc-cHHH
Q ss_pred HHHHHHhhhhc
Q 005098 565 CVRIAQGLVHM 575 (714)
Q Consensus 565 ~~~lA~Gll~~ 575 (714)
-+-+|.|+.++
T Consensus 402 k~~~as~I~~l 412 (866)
T KOG1062|consen 402 KADIASKIAEL 412 (866)
T ss_pred HHHHHHHHHHH
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=45.06 E-value=3.3e+02 Score=27.24 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=42.0
Q ss_pred hhhcccchhhHHhhhhhccC-CCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHHhcc
Q 005098 243 MILLWDVDSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAG 318 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s-~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~G 318 (714)
....++.+++...+++.+.. +++....-+.+.+|.++... .+-+.+++.+...+.. ++.....-+.+.+|.++..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 35568888888888776542 22222223456666665433 2345578878777652 2212112256667777754
No 111
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=44.57 E-value=7.7e+02 Score=31.29 Aligned_cols=237 Identities=18% Similarity=0.158 Sum_probs=108.7
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCCCCh-hhHHHHHHHhcc-CCChHHHHHHHHHHHHH-hccCCCH----hHHHHHHh
Q 005098 258 KYFHSTDNHVIAGALLGVGIVNCGIRNDC-DPALALLSEYVG-REDACIRIGAIMGLGIS-YAGTQND----QIRHKLST 330 (714)
Q Consensus 258 ~yL~s~~~~~~~GAllaLGli~~G~~~e~-d~~~~lL~~~L~-~~~~~v~~gA~lGLGl~-y~Gs~~~----~i~e~L~~ 330 (714)
.-+.+.++.++.+|.=|+|-++.--.++- |.++.-..+++. -.++..=||||++|+-. ..|---. +++..+..
T Consensus 348 s~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~k 427 (1133)
T KOG1943|consen 348 SALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILK 427 (1133)
T ss_pred HhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33457889999999999999975322110 112221122221 12345667999999964 3444344 44444443
Q ss_pred hhc-CCC-------Ch-hHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCch-hHhHHHHHHhHhhcCChhhH
Q 005098 331 ILN-DAK-------SP-LDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP-LTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 331 ~l~-d~~-------~~-~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~-~~r~a~l~lgLi~lG~~e~~ 400 (714)
.+. |.. .. .+.+++.+.|++..|--+.=......|...|.-..-=+ +|- .+|+|+ |-=.=..||+...
T Consensus 428 aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD-revncRRAAs-AAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 428 ALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD-REVNCRRAAS-AALQENVGRQGNF 505 (1133)
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC-chhhHhHHHH-HHHHHHhccCCCC
Confidence 332 321 11 23466777788876622211112222222221110001 222 344433 3223345775433
Q ss_pred HHHHHHHhhc-hhhhhhhhHHHH-HHHHhhcCC--CHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhH-
Q 005098 401 EATAEVSKTF-NEKIRKYCDMTL-LSCAYAGTG--NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMA- 475 (714)
Q Consensus 401 ~~ll~~L~~~-~~~~~r~~~~~~-~glayaGtG--n~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~- 475 (714)
+-=++..... ...+....-++- +....++-. ....+++|+..=..|-+. .+|-.+..++.-+...+|- .++
T Consensus 506 p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~--~irelaa~aL~~Ls~~~pk--~~a~ 581 (1133)
T KOG1943|consen 506 PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV--KIRELAAYALHKLSLTEPK--YLAD 581 (1133)
T ss_pred CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH--HHHHHHHHHHHHHHHhhHH--hhcc
Confidence 2111111111 112222222211 111111111 234556665443333332 6777788887777766661 222
Q ss_pred ---HHHHHHHHhcCCHHHHhhHHHHHhhh
Q 005098 476 ---IRSLEHLLQYGEQNIRRAVPLALGLL 501 (714)
Q Consensus 476 ---~~~l~~L~~~~~~~vr~g~~lALGl~ 501 (714)
++++... -..+++.|.|+-+|.|-+
T Consensus 582 ~~L~~lld~~-ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 582 YVLPPLLDST-LSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred cchhhhhhhh-cCCChHHhhhhHHHHHHH
Confidence 3444333 245778888877777643
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=44.57 E-value=87 Score=38.09 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcccChHHHH--HHHHHhcccCCCCCc--HHHHHHHHHHHhccCC
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTC--LYLTSAAKYLPGPDD--MLVLDIAYMIYLKFEE 77 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~~~~~ri~--~Yl~~~~~~~~~~~~--~~vl~~~~~i~~~~~~ 77 (714)
+|.+++-+||..|.+|.-||.+++-++....-.+.+...|..-.- .=++...+--..|+. .++|+.+-+.|.+++.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 478899999999999999999999999888777777665542221 112222221111122 2699999999999998
Q ss_pred HHHHHHHHHhcCCh
Q 005098 78 FPNALQIALFLDNM 91 (714)
Q Consensus 78 ~~~al~~al~l~d~ 91 (714)
|..|-..--+.+|.
T Consensus 1161 Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGDK 1174 (1416)
T ss_pred hHHHHHHHhhhhhH
Confidence 87776666555543
No 113
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.29 E-value=7.1e+02 Score=30.84 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=48.4
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCCC----ChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhh
Q 005098 258 KYFHSTDNHVIAGALLGVGIVNCGIRN----DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI 331 (714)
Q Consensus 258 ~yL~s~~~~~~~GAllaLGli~~G~~~----e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~ 331 (714)
.+++++..++|++++.-+.-.--.+.. ..+.+++...++|.+.++++=..|+-|+-... ---++++++.|...
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc-evy~e~il~dL~e~ 810 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC-EVYPEDILPDLSEE 810 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH-HhcchhhHHHHHHH
Confidence 335567789999999877654332211 01235677788899988888888887765542 22567888888773
No 114
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=42.79 E-value=3e+02 Score=29.00 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=19.4
Q ss_pred HHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHH
Q 005098 400 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQ 437 (714)
Q Consensus 400 ~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~ 437 (714)
.+.++..|...+||..+..+..+++-.-+=+.+.+.|+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir 51 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIR 51 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHH
Confidence 45555555555566666655555555433333444443
No 115
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=41.78 E-value=3.2e+02 Score=26.14 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=47.1
Q ss_pred hcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH-h
Q 005098 245 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-Q 323 (714)
Q Consensus 245 ~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~-~ 323 (714)
..++.+++...+.+.+....... .+...+|.++... .+.+.+...+...+....... .+...+|.++...++. +
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDY--LAYLALALYYQQL-GELEKAEDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHH
Confidence 34666666666655543322222 2333344443322 122335555555443211111 2333444444444332 3
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 005098 324 IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 368 (714)
Q Consensus 324 i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~ 368 (714)
..+.+...+......... .+...+|.++...++.+.+...+..
T Consensus 118 A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPA--RSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHHHHHHHhccccccch--HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333443333211111111 2334456666665555444444433
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.35 E-value=1.5e+02 Score=37.70 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=77.8
Q ss_pred hhhhccCCCchhHHHHHHHHHHHh--cCCCCChhhHHHHHHHhccCCChHHHHHH---HHHHHHHhccCC--CHhHHHHH
Q 005098 256 IDKYFHSTDNHVIAGALLGVGIVN--CGIRNDCDPALALLSEYVGREDACIRIGA---IMGLGISYAGTQ--NDQIRHKL 328 (714)
Q Consensus 256 l~~yL~s~~~~~~~GAllaLGli~--~G~~~e~d~~~~lL~~~L~~~~~~v~~gA---~lGLGl~y~Gs~--~~~i~e~L 328 (714)
...+|.++++++|-..+-.++-.. -|.....|.++..|-.||.+++...|.+- +-|+. +|+|.+ .+-++-+|
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs-i~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS-IFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceE-EEEeeeeHHHHHHHHH
Confidence 345566777899999988877654 36656667799999999999988888754 44443 478876 44455555
Q ss_pred HhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhh--cCccccCchhHhHHHHHHh
Q 005098 329 STILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD--RSESELGEPLTRLIPLGLG 390 (714)
Q Consensus 329 ~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~--~~~~~l~~~~~r~a~l~lg 390 (714)
.+-+.|.+..+-+....++. +|+-+|--...++-.+++...- .+ ...|+|.+++++=
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~PlL~h----PN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPLLCH----PNLWIRRAVLGII 720 (1431)
T ss_pred HHhccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhheeC----chHHHHHHHHHHH
Confidence 55556754222222222222 4555555555555555553210 12 3348887776653
No 117
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=40.72 E-value=3.3e+02 Score=26.02 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=5.8
Q ss_pred HHHHhhcCCCHH
Q 005098 423 LSCAYAGTGNVL 434 (714)
Q Consensus 423 ~glayaGtGn~~ 434 (714)
+|..|...|+..
T Consensus 141 l~~~~~~~g~~~ 152 (234)
T TIGR02521 141 AGLCALKAGDFD 152 (234)
T ss_pred HHHHHHHcCCHH
Confidence 344455555543
No 118
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.90 E-value=50 Score=39.22 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=61.2
Q ss_pred ccccchhHHHHHHhhc-ccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhh--hccCCCcHHHHHHHHHhhcCCchHHHH
Q 005098 451 EAYQGPAVLGIAMVAM-AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL--LCISNPKVNVMDTLSRLSHDTDSEVAM 527 (714)
Q Consensus 451 ~~vrr~avl~lalI~~-~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl--~~aGt~~~~ai~~L~~l~~D~~~~Vr~ 527 (714)
+..+++|-+++--.++ +.+.-.+-.|-++.-+....+|.||..+.++||= +|--|--.+.-+.|.+-++|.+..||+
T Consensus 910 ~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~r 989 (1128)
T COG5098 910 EELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRR 989 (1128)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHH
Confidence 3678888888765544 3333223344444444457789999999999984 333344445566777888999999999
Q ss_pred HHHHHHHH-HcCCC
Q 005098 528 AAVISLGL-IGSGT 540 (714)
Q Consensus 528 ~AiiAlGl-V~aGt 540 (714)
++..-+.+ +++|+
T Consensus 990 tclmti~fLilagq 1003 (1128)
T COG5098 990 TCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHHHHHccc
Confidence 99888764 55654
No 119
>PLN03077 Protein ECB2; Provisional
Probab=39.64 E-value=8.2e+02 Score=30.19 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCC
Q 005098 4 VQEIVAFHMKHNAEPEAVDLLMEVED 29 (714)
Q Consensus 4 v~~iv~~~~~~n~e~~AvdlllE~~~ 29 (714)
.+.++..+.+.|...+|..+.-|...
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~ 149 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPE 149 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC
Confidence 35566677788888888887777654
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.83 E-value=3.2e+02 Score=29.19 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=44.8
Q ss_pred cccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHH-------hhhccC--------CCcHHHHHHHHH
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLAL-------GLLCIS--------NPKVNVMDTLSR 516 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lAL-------Gl~~aG--------t~~~~ai~~L~~ 516 (714)
.+|..++.++|+.++=+..-......++.+..+.+++.||..+.-++ |..... .....+.+.|.+
T Consensus 42 ~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~ 121 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTK 121 (298)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHH
Confidence 66666777776666655411111222222223344555554433222 111111 234567777777
Q ss_pred hhcCCchHHHHHHHHHHHHHc
Q 005098 517 LSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 517 l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
++.+.++.++..|+-+++-++
T Consensus 122 ~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 122 FLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHhcCCHHHHHHHHHHHHHHH
Confidence 777777778877777776444
No 121
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=38.06 E-value=7.8e+02 Score=29.52 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=65.1
Q ss_pred HHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhc---hhhhhhhhHHHHHH
Q 005098 348 SLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTF---NEKIRKYCDMTLLS 424 (714)
Q Consensus 348 aLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~---~~~~~r~~~~~~~g 424 (714)
+|.-.|.-.|+-+.+..++..+.+. ...-+-++.-|+..-|..+++..+++.+... ++.++ | .++-
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~-------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~---~~ll 433 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRK-------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT-F---LAVL 433 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC-------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH-H---HHHH
Confidence 3444454555656666666654321 1234555666777888888888887776542 22222 2 2333
Q ss_pred HHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHH
Q 005098 425 CAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 482 (714)
Q Consensus 425 layaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L 482 (714)
-+|+-.|..+...++++...++..-.++......+.-++.-.|+. +.+.++++..
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~---~eA~~~~~~~ 488 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL---DEAYAMIRRA 488 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH---HHHHHHHHHC
Confidence 455667777666666655543211112444445555555555554 6666666553
No 122
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=37.99 E-value=5e+02 Score=29.16 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=60.2
Q ss_pred cccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC------cHHHHHHHH----------
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP------KVNVMDTLS---------- 515 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~------~~~ai~~L~---------- 515 (714)
.++..+-++-|+|+=+.|.+.+...++++.|. ++.+...++-+++++..-.+ +...++.|.
T Consensus 250 ~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 250 ALEILIWITKALVMRGHPLATELLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 34456678889999898877777777776553 37888999999998876521 112233332
Q ss_pred ---HhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 516 ---RLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 516 ---~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
...+..++..+.+-+.|++.+....+.
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCH
Confidence 223455666888889999999887774
No 123
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.59 E-value=90 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 510 VMDTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 510 ai~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
+-+.+..+++++|++||..|+.|+..+|.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44566777888999999999999887764
No 124
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=37.59 E-value=1.6e+02 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.5
Q ss_pred cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 507 KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 507 ~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
-+.+++++...++|+|++|=.+||=+++.+.-...+
T Consensus 41 ~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 41 IPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 346677778889999999999999888776554433
No 125
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=37.57 E-value=1.3e+02 Score=36.75 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHH----HHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNV----MDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 548 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~a----i~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~ 548 (714)
+.+++.+....+. +--.|....+++..+.-==|+.-. ...+..+.+|++..||.+++-.+--++..-..+..-..
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~ 635 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE 635 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH
Confidence 3456666555553 347888888888754321133222 33456788999999999999999888776554444444
Q ss_pred HHHHHhhhc--cChhHHHHHHHHHhhhhc
Q 005098 549 LRNLSSYYY--KDANLLFCVRIAQGLVHM 575 (714)
Q Consensus 549 lr~l~~~~~--~d~~~~~~~~lA~Gll~~ 575 (714)
++++..... .|.+.+|.+..|+|.+.+
T Consensus 636 v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 636 VLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 444444333 456799999999998765
No 126
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=37.37 E-value=4.3e+02 Score=28.14 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=69.1
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHH---HH----hccCCC------
Q 005098 255 QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLG---IS----YAGTQN------ 321 (714)
Q Consensus 255 ~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLG---l~----y~Gs~~------ 321 (714)
++-+.+.+.+..+|.-|+-.||+...=..+-...-+.++...++..++.++..|+-++- +. ...+..
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 34566678889999999999999754322222234455666666667777776655543 22 222222
Q ss_pred --HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC--C-HHHHHHHHHHH
Q 005098 322 --DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC--N-EEVAQAIIFAL 369 (714)
Q Consensus 322 --~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~--~-~~~~e~Ll~~L 369 (714)
..+.+.+...+.+. +.+++..|+-|+.-+++... + .++.+.|+-..
T Consensus 111 ~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~y 161 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLY 161 (298)
T ss_pred hHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 25666677666644 45677788888887776543 3 45666655443
No 127
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=36.76 E-value=32 Score=32.90 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.4
Q ss_pred HHhccCCHHHHHHHHHhcCChhHHHHHHhhc
Q 005098 71 IYLKFEEFPNALQIALFLDNMQYVKQIFTSC 101 (714)
Q Consensus 71 i~~~~~~~~~al~~al~l~d~~~i~~i~~~~ 101 (714)
=|.+.++|.+|+..|++++.|..+-++|+++
T Consensus 6 N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~ 36 (141)
T PF08625_consen 6 NLLRQKDYKEALRLALKLDHPFRLLKILKDL 36 (141)
T ss_pred HHHHhhhHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3557889999999999999999999999873
No 128
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=9.3e+02 Score=29.66 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=60.7
Q ss_pred hhHHHHHHHhhhhhcccchhh-HHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHH
Q 005098 232 HGKMSAAASLGMILLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIM 310 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~~~~-l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~l 310 (714)
-.|.+|...+.-|+..-+.+- +..+++-..+.++|+|..|..|+--.|.--.++-+.....+...|.+.++.|-..|++
T Consensus 123 LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~ 202 (968)
T KOG1060|consen 123 LIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVM 202 (968)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 457778777777765444432 3346677778899999999999999987544443445555556677888888888888
Q ss_pred HHHHHhc
Q 005098 311 GLGISYA 317 (714)
Q Consensus 311 GLGl~y~ 317 (714)
+.--++.
T Consensus 203 AF~evCP 209 (968)
T KOG1060|consen 203 AFEEVCP 209 (968)
T ss_pred HHHHhch
Confidence 8776644
No 129
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=34.24 E-value=4.5e+02 Score=26.34 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=56.3
Q ss_pred hcCCHHHHhhHHHHHhhhccCCC-cHHH-HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC--ch-----H-HHHHHHHHH
Q 005098 484 QYGEQNIRRAVPLALGLLCISNP-KVNV-MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN--NA-----R-IAGMLRNLS 553 (714)
Q Consensus 484 ~~~~~~vr~g~~lALGl~~aGt~-~~~a-i~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~--n~-----r-v~~~lr~l~ 553 (714)
.+.+..||..+.-+|--++-..+ ..++ ...+....++.+..||..+.-.+..+.-..+ .+ . +.++...+.
T Consensus 104 ~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~ 183 (228)
T PF12348_consen 104 GDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALV 183 (228)
T ss_dssp G---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHH
Confidence 34567888888888888777666 5677 7889999999999999998888877766555 11 1 233444444
Q ss_pred hhh-ccChhHHHHHHHHHhhhh
Q 005098 554 SYY-YKDANLLFCVRIAQGLVH 574 (714)
Q Consensus 554 ~~~-~~d~~~~~~~~lA~Gll~ 574 (714)
+.. ..+|.+|-.++-+...++
T Consensus 184 ~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 184 KLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHH
Confidence 433 356778888877776663
No 130
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=33.56 E-value=1.1e+03 Score=29.95 Aligned_cols=224 Identities=12% Similarity=-0.052 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHHhccCCC-HhHHHHHHhhhcCCCChhHHHHHH
Q 005098 268 IAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILNDAKSPLDVIAFS 345 (714)
Q Consensus 268 ~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~-~~i~e~L~~~l~d~~~~~e~~~~A 345 (714)
...+...+|.+.... ..+.++..+...+.. ++. ..-+++|.++.-.++ ++..+.+...+..+... . +
T Consensus 476 ~~~a~~~LG~~l~~~--~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRDT--LPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----D 544 (987)
T ss_pred CHHHHHHHHHHHHhC--CcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----H
Confidence 456777777776652 223366655555442 222 236667776544444 34444444443321111 1 3
Q ss_pred HHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHH
Q 005098 346 AISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 425 (714)
Q Consensus 346 alaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~gl 425 (714)
.+.+|.+.+..++.+.+...+.......+ +.......++..+...|+.+++...++...... |- ......+|.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P----~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~--~~a~~~LA~ 617 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGL----GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PS--ANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC--HHHHHHHHH
Confidence 45667777777777666666655443221 112233344445555688887777666544432 21 223456678
Q ss_pred HhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhc--CCHHHHhhHHHHHhhhcc
Q 005098 426 AYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCI 503 (714)
Q Consensus 426 ayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~--~~~~vr~g~~lALGl~~a 503 (714)
++...|+.......+.-+.....+ +.....-+|..+...++. +.+...+...++. .++.+....+.++-
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~---eeAi~~l~~AL~l~P~~~~a~~nLA~al~---- 688 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDI---AQSREMLERAHKGLPDDPALIRQLAYVNQ---- 688 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHH----
Confidence 888899865444433333322221 445556667777777776 6777777765543 34555554444332
Q ss_pred CCCc-HHHHHHHHHhh
Q 005098 504 SNPK-VNVMDTLSRLS 518 (714)
Q Consensus 504 Gt~~-~~ai~~L~~l~ 518 (714)
..|+ .++++.+++..
T Consensus 689 ~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 689 RLDDMAATQHYARLVI 704 (987)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 3344 34555666553
No 131
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=33.26 E-value=1.1e+03 Score=29.91 Aligned_cols=212 Identities=11% Similarity=-0.022 Sum_probs=104.2
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHH
Q 005098 345 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 424 (714)
Q Consensus 345 AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~g 424 (714)
+-..+|.+.......++++.+.+.+.. .+. .+ .-.++|..+.-.|+-+++....+.+...+... ...+..|
T Consensus 479 a~~~LG~~l~~~~~~eAi~a~~~Al~~-~Pd----~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~---~a~~~la 549 (987)
T PRK09782 479 AWNRLAKCYRDTLPGVALYAWLQAEQR-QPD----AW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN---EDLLAAA 549 (987)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHh-CCc----hH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc---HHHHHHH
Confidence 446677777775666676666665532 221 12 23334444456777777776666554432211 1234557
Q ss_pred HHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccC
Q 005098 425 CAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCIS 504 (714)
Q Consensus 425 layaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aG 504 (714)
.++...|+.......++-+.....+ .......++..+...|+. +.+.+.+...++. +|.. .+-..+|.++.-
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~--~~~l~~~La~~l~~~Gr~---~eAl~~~~~AL~l-~P~~--~a~~~LA~~l~~ 621 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLG--DNALYWWLHAQRYIPGQP---ELALNDLTRSLNI-APSA--NAYVARATIYRQ 621 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHh-CCCH--HHHHHHHHHHHH
Confidence 7778888865544443333221111 222233334444445776 6777777766653 3332 233444444443
Q ss_pred CCc-HHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHhhhccChhHHHHHHHHHhhhhcCCCcc
Q 005098 505 NPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 505 t~~-~~ai~~L~~l~-~D~~~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G~g~~ 580 (714)
.++ .++++.+.+.+ .+|++. .+...+|.+....++ .+-...+++..+. +|+. ..+...+|.+...-|.+
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l---~P~~-~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG---LPDD-PALIRQLAYVNQRLDDM 693 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHCCCH
Confidence 443 44666776654 466653 234555555554443 2222344433332 3321 13344555555555553
No 132
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.01 E-value=9.7e+02 Score=29.14 Aligned_cols=79 Identities=24% Similarity=0.257 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHH----HHHHhhc-CCchHHHHHHHHHHHHHcCCCCchH--HHH
Q 005098 475 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD----TLSRLSH-DTDSEVAMAAVISLGLIGSGTNNAR--IAG 547 (714)
Q Consensus 475 ~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~----~L~~l~~-D~~~~Vr~~AiiAlGlV~aGt~n~r--v~~ 547 (714)
+...+..++.+.++++||-+-=.+..++.++...++++ +....++ ++|..||+-|+==|= -|.--.|++ |..
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY-~mcD~~Nak~IV~e 408 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLY-AMCDVSNAKQIVAE 408 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHH-HHhchhhHHHHHHH
Confidence 44455566778899999999999999988888888874 3334455 889889987653321 122234554 456
Q ss_pred HHHHHHh
Q 005098 548 MLRNLSS 554 (714)
Q Consensus 548 ~lr~l~~ 554 (714)
+|+.|..
T Consensus 409 lLqYL~t 415 (938)
T KOG1077|consen 409 LLQYLET 415 (938)
T ss_pred HHHHHhh
Confidence 7776643
No 133
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=32.74 E-value=6e+02 Score=31.50 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHhhHHHHHhhhccCCC----cHHHHHHH----HHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 005098 477 RSLEHLLQYGEQNIRRAVPLALGLLCISNP----KVNVMDTL----SRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 548 (714)
Q Consensus 477 ~~l~~L~~~~~~~vr~g~~lALGl~~aGt~----~~~ai~~L----~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~ 548 (714)
+.+...+..++|-+|...-..+.-....++ ....++.+ -+..+|.+.+||-+|.=++|.|+-=.+...+.++
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344466788888887777666655554 33334433 3446899999999999999988866666556666
Q ss_pred HHHHH
Q 005098 549 LRNLS 553 (714)
Q Consensus 549 lr~l~ 553 (714)
|..+.
T Consensus 454 L~~~~ 458 (815)
T KOG1820|consen 454 LKDLD 458 (815)
T ss_pred HHhhc
Confidence 66654
No 134
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=31.18 E-value=4.4e+02 Score=31.06 Aligned_cols=47 Identities=32% Similarity=0.386 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC--cHHHHHHHHHhhc
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP--KVNVMDTLSRLSH 519 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~--~~~ai~~L~~l~~ 519 (714)
+.+...+-.|+++.|..||..+.-+|-.+|-.|+ -.+++|.|.+++.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh
Confidence 5555555667788889999999999999988764 4788888888865
No 135
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=30.89 E-value=1.8e+02 Score=30.25 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=0.0
Q ss_pred cccchhhHHhhhhh
Q 005098 246 LWDVDSGLAQIDKY 259 (714)
Q Consensus 246 ~~~~~~~l~~l~~y 259 (714)
.|+.++|++.|++.
T Consensus 21 ~~~~~~Al~~L~~~ 34 (280)
T PF13429_consen 21 RGDYEKALEVLKKA 34 (280)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 46777777777544
No 136
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=30.70 E-value=72 Score=23.04 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=12.3
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHH
Q 005098 511 MDTLSRLSHDTDSEVAMAAVISLG 534 (714)
Q Consensus 511 i~~L~~l~~D~~~~Vr~~AiiAlG 534 (714)
+..|-+++++++..|+..|.-|++
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~ 37 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALG 37 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444455555555555555555544
No 137
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.45 E-value=1.7e+02 Score=36.78 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=64.7
Q ss_pred HHHhhccccCCCC--ccccchhHHHHHHhhcccchh-----hhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC----
Q 005098 438 NLLGHCAQHHEKG--EAYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP---- 506 (714)
Q Consensus 438 ~LL~~~~~~~~~~--~~vrr~avl~lalI~~~~~~~-----~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~---- 506 (714)
.|+.+|-++.+++ +-.|+.++|++|.+--.-+.. ..++.+.+-.++.+.-|.||.++.||||-.- |++
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl-~~~~d~f 677 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL-SNGSDNF 677 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh-ccccccc
Confidence 3666676665541 357889999999986544321 1445555556667778999999999999753 322
Q ss_pred --cHHH-------------HH--------HHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 507 --KVNV-------------MD--------TLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 507 --~~~a-------------i~--------~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
+... ++ .|..+.+|....||....+++.=.+.|-
T Consensus 678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 1111 11 2334467888888877777777666653
No 138
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.87 E-value=2.8e+02 Score=26.93 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=57.9
Q ss_pred ChHHHHHHHHhcCChhhhHHHhcccChHHHHHHHHHhcccCCCC-CcHHHHHHHHHHHhccCCHHHHHHHHHhcCChhHH
Q 005098 16 AEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGP-DDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYV 94 (714)
Q Consensus 16 ~e~~AvdlllE~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~-~~~~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i 94 (714)
+.-..+...|+...++++.++++......++..+..+....... ++..+..-++..++..=.....+... +..++.+
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v--~~~~~~v 160 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAV--LSHPDSV 160 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHH--HCSSSHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHH--HcCcHHH
Confidence 45667788899999999999999888888888888887655443 33332222222222211122333333 3467777
Q ss_pred HHHHhhc--chHHHHHHHHHHHh
Q 005098 95 KQIFTSC--DDLLRKKQFCYILA 115 (714)
Q Consensus 95 ~~i~~~~--~d~~~~~Qlaf~la 115 (714)
..+...+ +++.++.|...+|+
T Consensus 161 ~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 161 NLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp HHHHHT--TTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Confidence 7666664 45666666665554
No 139
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.85 E-value=1.1e+02 Score=36.85 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHhccCCHHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHHHHh
Q 005098 71 IYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILA 115 (714)
Q Consensus 71 i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~la 115 (714)
..++++++..||+.|++.+|+++|..++-.+.+...+.++--.|-
T Consensus 542 lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~ 586 (829)
T KOG2280|consen 542 LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLR 586 (829)
T ss_pred HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999988777766665544443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.87 E-value=5.4e+02 Score=23.86 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh--hhHHHHHHHHhhchhhhhhhh
Q 005098 341 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--ESVEATAEVSKTFNEKIRKYC 418 (714)
Q Consensus 341 ~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~--e~~~~ll~~L~~~~~~~~r~~ 418 (714)
....|.|.++-+++..++-+-+...++.+.+.. . .+.+...+-+.+|-+++..+ +.+...+ ...+++..+.-
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~L---~~~~~~~~~~~ 119 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA--P-DPELKPLARLRLARILLQQGQYDEALATL---QQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HhccCcchHHH
Confidence 334677778888888777776666666655422 1 23344445555555555333 3333333 33333333444
Q ss_pred HHHHHHHHhhcCCCHHH
Q 005098 419 DMTLLSCAYAGTGNVLK 435 (714)
Q Consensus 419 ~~~~~glayaGtGn~~~ 435 (714)
.....|-.|..-|+...
T Consensus 120 ~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHHHHCCCHHH
Confidence 45567777777777543
No 141
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=25.81 E-value=1.5e+02 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHhc-CChhhhHHHhcc
Q 005098 5 QEIVAFHMKHNAEPEAVDLLMEV-EDLDLLVEHVDA 39 (714)
Q Consensus 5 ~~iv~~~~~~n~e~~AvdlllE~-~~ld~i~~~vd~ 39 (714)
++.+-.+-+.|.+.+|++++++- ++.+...+++.+
T Consensus 86 ~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 86 EEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 34444455556666666666665 555555555544
No 142
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=25.25 E-value=1.4e+02 Score=35.02 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhc
Q 005098 433 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC 502 (714)
Q Consensus 433 ~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~ 502 (714)
..++..++..|.++.. .||..|+=+|-.++-.++.-...+.+++.+|++..++..+..+--||--++
T Consensus 58 ~~Ai~a~~DLcEDed~---~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDV---QIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHHHHHHT-SSH---HHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccH---HHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4567777777764332 677777777777776665212334455566667777666666666654443
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=25.09 E-value=3.2e+02 Score=23.43 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhcCCHHH-HhhHHHHHhhhccCCCc-HHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHH
Q 005098 473 EMAIRSLEHLLQYGEQNI-RRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGM 548 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~v-r~g~~lALGl~~aGt~~-~~ai~~L~~l~~-D~~~~Vr~~AiiAlGlV~aGt~n-~rv~~~ 548 (714)
+.+.+.+..+.+....+. ..-+.+-+|.++...++ ..|++.+..+.. +|+......+...+|.+..+.++ .+..+.
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 445555555544221111 12234556666666666 457777777653 45432223345556666555554 233455
Q ss_pred HHHHHhh
Q 005098 549 LRNLSSY 555 (714)
Q Consensus 549 lr~l~~~ 555 (714)
++++...
T Consensus 99 ~~~~~~~ 105 (119)
T TIGR02795 99 LQQVIKR 105 (119)
T ss_pred HHHHHHH
Confidence 5554444
No 144
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.74 E-value=1.9e+02 Score=36.24 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhh-cch-----HHHHHHHHHHHh
Q 005098 42 FKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTS-CDD-----LLRKKQFCYILA 115 (714)
Q Consensus 42 ~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~-~~d-----~~~~~Qlaf~la 115 (714)
+.||..|+..-.+... --.++|.|.+-|.+|+.-|-+.+|.+..++++.- ++. .....=-||+|-
T Consensus 1506 frriaAylyk~n~rW~---------qSiel~Kkd~lyKDame~Aa~S~~~~lae~Ll~~F~e~g~~ecFaa~Ly~cYdLl 1576 (1666)
T KOG0985|consen 1506 FRRIAAYLYKGNNRWK---------QSIELCKKDKLYKDAMETAAESRDTELAEELLQYFLEEGKRECFAACLYTCYDLL 1576 (1666)
T ss_pred HHHHHHHHHhccchHH---------HHHHHhhhhhHHHHHHHHHHhcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 4678888887776552 2346777888899999999999999999998875 221 133344568877
Q ss_pred hhcccccc
Q 005098 116 RHGITLEL 123 (714)
Q Consensus 116 rq~~~~~~ 123 (714)
|-.+..++
T Consensus 1577 rpd~vlEl 1584 (1666)
T KOG0985|consen 1577 RPDVVLEL 1584 (1666)
T ss_pred ChHHHHHH
Confidence 76555543
No 145
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.10 E-value=1.1e+03 Score=29.34 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=46.8
Q ss_pred HHHHHcCCChHHHHHHHHh----cCChhhhHHHhcccChHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHHHHHH
Q 005098 8 VAFHMKHNAEPEAVDLLME----VEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQ 83 (714)
Q Consensus 8 v~~~~~~n~e~~AvdlllE----~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~~al~ 83 (714)
=.|+++.|++.+|++-=+| +|--+.|.+|+|...-..++.||-.....-...+|- -.-.|-
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh---------------ttlLLn 439 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH---------------TTLLLN 439 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchh---------------HHHHHH
Confidence 3466667777777777666 333455666666655666666666665444333321 122345
Q ss_pred HHHhcCChhHHHHHHhhcc
Q 005098 84 IALFLDNMQYVKQIFTSCD 102 (714)
Q Consensus 84 ~al~l~d~~~i~~i~~~~~ 102 (714)
|.+++.|.+++.+.++.++
T Consensus 440 cYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 440 CYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHhcchHHHHHHHhcCC
Confidence 5566677777777766665
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=23.80 E-value=1.5e+03 Score=28.22 Aligned_cols=187 Identities=6% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhc
Q 005098 350 GLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAG 429 (714)
Q Consensus 350 GLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaG 429 (714)
+++..-.|+-+-+-..++...+..+.. ...+. .+..-+...|+.+++....+... ......+.+..+++..|..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~-~~av~---dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQ-SGQVD---DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccc-hhhHH---HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH
Q ss_pred CCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-
Q 005098 430 TGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV- 508 (714)
Q Consensus 430 tGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~- 508 (714)
.|+....-++++-+.+...+ +..-...++....-.++. +.+.+.+..+... +|..+.. ++++.++.+..+.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~---~eAl~~l~~l~~~-dp~~~~~--l~layL~~~~~~~~ 186 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRG---GVVLKQATELAER-DPTVQNY--MTLSYLNRATDRNY 186 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCH---HHHHHHHHHhccc-CcchHHH--HHHHHHHHhcchHH
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 005098 509 NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 551 (714)
Q Consensus 509 ~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~ 551 (714)
+++..+++++.-.-++....--....+...|-.++.. +++++
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~-~l~~~ 228 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL-RLAKE 228 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH-HHHHh
No 147
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.72 E-value=1e+03 Score=26.38 Aligned_cols=282 Identities=13% Similarity=0.053 Sum_probs=128.6
Q ss_pred HHhhhhh--cccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHH
Q 005098 239 ASLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGIS 315 (714)
Q Consensus 239 aslGlI~--~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~ 315 (714)
..-|++. .||.+.+.+.+.+-....+.+.-.-.+.|--....| +.+.+..+|....+. ++..+.... ..+-+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g---~~~~A~~~l~~a~~~~p~~~l~~~~--~~a~l 162 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG---DEARANQHLEEAAELAGNDNILVEI--ARTRI 162 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCcCchHHHH--HHHHH
Confidence 3344443 578888888777665544444333333333333334 334466667666542 222111111 11333
Q ss_pred hccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH-HHHHHhHh
Q 005098 316 YAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL-IPLGLGLL 392 (714)
Q Consensus 316 y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~-a~l~lgLi 392 (714)
+...++ +...+.+...+. .+. +. .+...+|.+++..++-+.+..+++.+......+ .+.+... .....+++
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~-~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPR-HK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHH
Confidence 333444 344555554443 221 12 356678888899998888888888776432111 1111110 01122333
Q ss_pred hcCCh-hhHHHHHHHHhhchhhhh-hhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccc--hhHHHHHHhhccc
Q 005098 393 YLGKQ-ESVEATAEVSKTFNEKIR-KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQG--PAVLGIAMVAMAE 468 (714)
Q Consensus 393 ~lG~~-e~~~~ll~~L~~~~~~~~-r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr--~avl~lalI~~~~ 468 (714)
--+.. +..+.+.+.....+.... .....++++-.+...|+.+...+++.-......+ +... ..+..+..+--++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd--~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD--DRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cccchhHHHHHhhhcCCCC
Confidence 22221 122333333333332111 2233445566677777755444444333322111 1111 1223333332233
Q ss_pred chhhhhHHHHHHHHHhc--CCHHHHhhHHHHHhhhccCCCcHH-HHHHHHH---hhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 469 ELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVN-VMDTLSR---LSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 469 ~~~~~~~~~~l~~L~~~--~~~~vr~g~~lALGl~~aGt~~~~-ai~~L~~---l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
+ +...+.++.-... .||+ ...-.++|-++...++.. |.+.|++ +..+|++... ..+|.+....++
T Consensus 315 ~---~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~----~~La~ll~~~g~ 385 (409)
T TIGR00540 315 N---EKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL----AMAADAFDQAGD 385 (409)
T ss_pred h---HHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH----HHHHHHHHHcCC
Confidence 2 4445555444332 3342 234456676666665554 5566763 2345665431 355666655554
No 148
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.60 E-value=1.5e+02 Score=35.61 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.7
Q ss_pred HHHHhccCCHHHHHHHHHhcCChhHHHHHHhhc
Q 005098 69 YMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC 101 (714)
Q Consensus 69 ~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~~ 101 (714)
..-+++.++|..|+..+++||+.+.|++++.++
T Consensus 728 v~~al~~qey~~AlvmslRLNe~~lI~evlesv 760 (893)
T KOG0291|consen 728 VREALREQEYLKALVMSLRLNEYKLIKEVLESV 760 (893)
T ss_pred HHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhC
Confidence 345668889999999999999999999999997
No 149
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=23.23 E-value=9.1e+02 Score=25.60 Aligned_cols=166 Identities=12% Similarity=0.010 Sum_probs=80.4
Q ss_pred chhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHHhccCC--CH-hHHHHHHhhhcCCCChhH
Q 005098 265 NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQ--ND-QIRHKLSTILNDAKSPLD 340 (714)
Q Consensus 265 ~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~--~~-~i~e~L~~~l~d~~~~~e 340 (714)
+......+.|+.....|. .+.+.+.+...+.. ++.. ..... ++...+.|.. .. ...+.+.. .... ....
T Consensus 41 ~~~e~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~P~~~-~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~ 113 (355)
T cd05804 41 TERERAHVEALSAWIAGD---LPKALALLEQLLDDYPRDL-LALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPE-NPDY 113 (355)
T ss_pred CHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCcH-HHHHH-hHHHHHhcccccCchhHHHHHhc-cCcC-CCCc
Confidence 444556677777777664 34467777666653 2222 11111 4444444432 22 23333322 2211 1112
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhch--hhhhhhh
Q 005098 341 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN--EKIRKYC 418 (714)
Q Consensus 341 ~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~--~~~~r~~ 418 (714)
. .+...+|.++...|+.+-+...+....+..+ ++.. -...+|..+...|+-+++...++...... ++.....
T Consensus 114 ~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p---~~~~-~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 114 W--YLLGMLAFGLEEAGQYDRAEEAARRALELNP---DDAW-AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCcH-HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 2 2333556666667665555555544443322 2222 22333445555566667666665444332 1222222
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhc
Q 005098 419 DMTLLSCAYAGTGNVLKVQNLLGHC 443 (714)
Q Consensus 419 ~~~~~glayaGtGn~~~i~~LL~~~ 443 (714)
..+.++..|...|+.+....+++-.
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345778888999977665555543
No 150
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.21 E-value=2e+03 Score=29.67 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhhchhhhhhhhHHHHHHHHh--hcCC-C----HHHHHHHHhhccccCCCCccccchhHHHHHHhhccc
Q 005098 398 ESVEATAEVSKTFNEKIRKYCDMTLLSCAY--AGTG-N----VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE 468 (714)
Q Consensus 398 e~~~~ll~~L~~~~~~~~r~~~~~~~glay--aGtG-n----~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~ 468 (714)
+.++..++.+..-.|++.|.|-.+++||.+ .|++ + ...++.|+....+...+ .|++.++.+++++.-..
T Consensus 915 ~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p--~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 915 SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSP--VVQTWSLHALALILDSS 990 (2067)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCc--hhhhhHHHHHHHHHcCC
Confidence 467888999999999999999999999975 4433 2 34577788877655554 89999999999987543
No 151
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.72 E-value=1.4e+03 Score=27.07 Aligned_cols=240 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhh-HHHHHHHhccCCChHHHHHHHHHHHHHhcc
Q 005098 240 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP-ALALLSEYVGREDACIRIGAIMGLGISYAG 318 (714)
Q Consensus 240 slGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~-~~~lL~~~L~~~~~~v~~gA~lGLGl~y~G 318 (714)
++-++..|++.++.-.+.--......+..+--.+ |++|+- +|.|. ++..|...++-+..... |+++|+..|..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~L--G~~qaE--NE~E~~ai~AL~rcl~LdP~Nle--aLmaLAVSytN 365 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKL--GITQAE--NENEQNAISALRRCLELDPTNLE--ALMALAVSYTN 365 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHh--hhHhhh--ccchHHHHHHHHHHHhcCCccHH--HHHHHHHHHhh
Q ss_pred CCCH-hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCC-------------CCHHHHHHHHHHHhhcCccccCchhHhH
Q 005098 319 TQND-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS-------------CNEEVAQAIIFALMDRSESELGEPLTRL 384 (714)
Q Consensus 319 s~~~-~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs-------------~~~~~~e~Ll~~L~~~~~~~l~~~~~r~ 384 (714)
.+.+ +.+..|...+... ..++ ++.+ -+......+...+.+..-.. ..++-.=
T Consensus 366 eg~q~~Al~~L~~Wi~~~--p~y~-----------~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-~~~~Dpd 431 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNK--PKYV-----------HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-PTKIDPD 431 (579)
T ss_pred hhhHHHHHHHHHHHHHhC--ccch-----------hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-CCCCChh
Q ss_pred HHHHHhHhhcCChh---hHHHHHHHHhhchhhhh---hhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhH
Q 005098 385 IPLGLGLLYLGKQE---SVEATAEVSKTFNEKIR---KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAV 458 (714)
Q Consensus 385 a~l~lgLi~lG~~e---~~~~ll~~L~~~~~~~~---r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~av 458 (714)
.-.|||.+|.=++| .++..-..|...|.... |.|+++| =|.-++++|+.-=+-+.=... .||.-.=
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-----N~~~s~EAIsAY~rALqLqP~---yVR~RyN 503 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-----NGNRSEEAISAYNRALQLQPG---YVRVRYN 503 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-----CCcccHHHHHHHHHHHhcCCC---eeeeehh
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhh
Q 005098 459 LGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS 518 (714)
Q Consensus 459 l~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~ 518 (714)
+||..+-.|.- .|.+.-.+.-|.--....--+.+|.+ +..+..+|+..+
T Consensus 504 lgIS~mNlG~y--kEA~~hlL~AL~mq~ks~~~~~~~~~---------se~iw~tLR~al 552 (579)
T KOG1125|consen 504 LGISCMNLGAY--KEAVKHLLEALSMQRKSRNHNKAPMA---------SENIWQTLRLAL 552 (579)
T ss_pred hhhhhhhhhhH--HHHHHHHHHHHHhhhcccccccCCcc---------hHHHHHHHHHHH
No 152
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=21.20 E-value=2.5e+02 Score=23.72 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=8.2
Q ss_pred chhHHHHHHhhccc
Q 005098 455 GPAVLGIAMVAMAE 468 (714)
Q Consensus 455 r~avl~lalI~~~~ 468 (714)
+++..++|-|+.++
T Consensus 5 KaaLWaighIgss~ 18 (73)
T PF14668_consen 5 KAALWAIGHIGSSP 18 (73)
T ss_pred HHHHHHHHhHhcCh
Confidence 45666666665443
No 153
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.17 E-value=1.8e+02 Score=36.77 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred ccccchhHHHHHHhhcccc-hhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc--HHHHHHHHHhhcCCchHHHH
Q 005098 451 EAYQGPAVLGIAMVAMAEE-LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK--VNVMDTLSRLSHDTDSEVAM 527 (714)
Q Consensus 451 ~~vrr~avl~lalI~~~~~-~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~--~~ai~~L~~l~~D~~~~Vr~ 527 (714)
+.++++|.+++|-.|+=.. ...+..+-++.-+-.+.+|.||..+.+|+|=+-..=|| ..--+.|.+.++|++..||.
T Consensus 937 p~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRk 1016 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRK 1016 (1251)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHH
Confidence 4689999999998765433 22233444444444578999999999998854332222 12224566778999999999
Q ss_pred HHHHHHHHHcC
Q 005098 528 AAVISLGLIGS 538 (714)
Q Consensus 528 ~AiiAlGlV~a 538 (714)
+|++-|..++.
T Consensus 1017 ta~lvlshLIL 1027 (1251)
T KOG0414|consen 1017 TALLVLSHLIL 1027 (1251)
T ss_pred HHHHHHHHHHH
Confidence 99988875543
No 154
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=21.10 E-value=1.8e+02 Score=25.18 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=35.0
Q ss_pred HhcccChHHHHHHHHHhcccCCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHhc
Q 005098 36 HVDATNFKRTCLYLTSAAKYLPGPDD-MLVLDIAYMIYLKFEEFPNALQIALFL 88 (714)
Q Consensus 36 ~vd~~~~~ri~~Yl~~~~~~~~~~~~-~~vl~~~~~i~~~~~~~~~al~~al~l 88 (714)
..+.+..+..+.=-.+..+-..+|++ +.+|-.++..|...|+|.++|.-|+.-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333344444444 689999999999999999999888653
No 155
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.43 E-value=1.6e+03 Score=27.50 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=49.7
Q ss_pred hHHHHHHHHHh--------cCCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 474 MAIRSLEHLLQ--------YGEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 474 ~~~~~l~~L~~--------~~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
.+|-+++.|.+ +.+|+...|+||-|---+.|.- -+.++.-.+.-.+.||-.-|-.|++|.|-|+-|-..
T Consensus 320 v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 46777777765 2357888888887776666652 224444455556788888899999999999999764
No 156
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=5e+02 Score=30.00 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=59.2
Q ss_pred cccchhHHHHHHhhcccch-----hhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhcc-------CCCcHHHHHHHHHhhc
Q 005098 452 AYQGPAVLGIAMVAMAEEL-----GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI-------SNPKVNVMDTLSRLSH 519 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~-----~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~a-------Gt~~~~ai~~L~~l~~ 519 (714)
.+|+.|.-++|.++.+-|- ++.++..++..|.+.-|..|..-+..+|....- +..-.++...++.+..
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~ 352 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFD 352 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHH
Confidence 7788888888888888551 235556666677666666777666666665431 2233445567778888
Q ss_pred CCchHHHHHHHHHHHHHc
Q 005098 520 DTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 520 D~~~~Vr~~AiiAlGlV~ 537 (714)
|-++.+|.+|+...|.+.
T Consensus 353 se~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 353 SEDDKMRAAAFVLFGALA 370 (533)
T ss_pred hcChhhhhhHHHHHHHHH
Confidence 888899999988887654
No 157
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=20.17 E-value=1.5e+03 Score=26.86 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=56.0
Q ss_pred hcCCHHHHhhHHHHHhhhccCCCcHHHHH--------HHHHhhcCCchHHHHHHHHHHHHHcCCC-------CchHHHHH
Q 005098 484 QYGEQNIRRAVPLALGLLCISNPKVNVMD--------TLSRLSHDTDSEVAMAAVISLGLIGSGT-------NNARIAGM 548 (714)
Q Consensus 484 ~~~~~~vr~g~~lALGl~~aGt~~~~ai~--------~L~~l~~D~~~~Vr~~AiiAlGlV~aGt-------~n~rv~~~ 548 (714)
+..+..+++.++..++-.|.=..++..+. .|.+-+.|++++||--|.-|+|...=+- .+|.+...
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 33456788999999999888776665543 3344567999999988888886554332 23444333
Q ss_pred HHHHHhhhccChhHHHHHHHHHhhhhcCCCcc
Q 005098 549 LRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 549 lr~l~~~~~~d~~~~~~~~lA~Gll~~G~g~~ 580 (714)
++. ++.-..+.+..-.++-+..|.|--
T Consensus 462 ~~~-----~k~~~~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 462 LTS-----EKSLVDRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred hcc-----chhhhhhHHHhhhHHHHHhcccch
Confidence 333 333334555555555555554443
Done!