Query 005098
Match_columns 714
No_of_seqs 293 out of 840
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 1E-128 5E-133 1139.8 48.5 606 2-650 146-786 (963)
2 4ady_A RPN2, 26S proteasome re 100.0 2.9E-49 9.9E-54 466.3 35.0 510 8-606 79-677 (963)
3 1oyz_A Hypothetical protein YI 98.9 5.9E-08 2E-12 100.2 21.7 103 435-554 160-262 (280)
4 1oyz_A Hypothetical protein YI 98.9 1.1E-07 3.6E-12 98.3 21.8 250 252-534 24-278 (280)
5 3ltm_A Alpha-REP4; protein eng 98.7 3.8E-07 1.3E-11 90.0 16.3 94 433-539 111-204 (211)
6 3ltj_A Alpharep-4; protein eng 98.6 6.6E-07 2.3E-11 87.5 16.5 182 289-536 15-196 (201)
7 3ltm_A Alpha-REP4; protein eng 98.6 1.3E-06 4.5E-11 86.0 16.8 189 357-576 16-204 (211)
8 3ltj_A Alpharep-4; protein eng 98.6 3.2E-06 1.1E-10 82.6 19.3 184 358-572 12-195 (201)
9 1b3u_A Protein (protein phosph 98.6 2.6E-06 9E-11 96.2 20.7 334 232-573 218-585 (588)
10 1b3u_A Protein (protein phosph 98.5 3.2E-06 1.1E-10 95.5 20.0 313 253-574 12-352 (588)
11 2jdq_A Importin alpha-1 subuni 98.4 6.5E-05 2.2E-09 81.9 27.8 304 258-575 27-390 (450)
12 2jdq_A Importin alpha-1 subuni 98.3 9.2E-05 3.1E-09 80.7 24.1 294 233-538 36-390 (450)
13 2vgl_B AP-2 complex subunit be 98.3 9.8E-05 3.3E-09 84.9 24.9 111 255-370 90-212 (591)
14 2vgl_B AP-2 complex subunit be 98.3 0.00012 4E-09 84.2 25.5 296 231-542 100-423 (591)
15 4b8j_A Importin subunit alpha- 98.3 0.00019 6.6E-09 80.6 26.8 272 232-539 89-401 (528)
16 1wa5_B Importin alpha subunit; 98.2 5.8E-05 2E-09 85.1 21.2 309 253-574 89-456 (530)
17 1w63_A Adapter-related protein 98.2 0.00012 4E-09 84.8 24.1 274 255-539 111-415 (618)
18 1wa5_B Importin alpha subunit; 98.2 0.00011 3.8E-09 82.8 22.3 293 233-538 103-457 (530)
19 4b8j_A Importin subunit alpha- 98.1 0.00023 7.9E-09 80.0 23.0 287 252-576 75-401 (528)
20 4hxt_A De novo protein OR329; 98.0 0.00051 1.7E-08 68.3 21.3 212 290-540 4-243 (252)
21 3ul1_B Importin subunit alpha- 98.0 0.00072 2.5E-08 76.2 24.4 276 256-542 62-391 (510)
22 3tpo_A Importin subunit alpha- 97.9 0.0017 5.7E-08 73.4 25.3 245 289-542 120-410 (529)
23 4fdd_A Transportin-1; heat rep 97.8 0.0035 1.2E-07 74.8 27.6 317 260-585 99-480 (852)
24 1w63_A Adapter-related protein 97.8 0.00064 2.2E-08 78.6 19.8 306 248-575 67-414 (618)
25 1te4_A Conserved protein MTH18 97.8 6.1E-05 2.1E-09 68.8 8.2 118 434-571 12-129 (131)
26 4fdd_A Transportin-1; heat rep 97.7 0.0047 1.6E-07 73.7 25.6 297 233-540 106-473 (852)
27 2z6g_A B-catenin; FULL-length, 97.7 0.0019 6.5E-08 76.7 21.6 280 252-542 151-476 (780)
28 3ul1_B Importin subunit alpha- 97.6 0.0055 1.9E-07 68.9 23.7 300 231-537 71-429 (510)
29 1jdh_A Beta-catenin; beta-cate 97.6 0.011 3.7E-07 65.7 25.1 327 233-571 117-526 (529)
30 4db8_A Armadillo-repeat protei 97.6 0.0028 9.7E-08 63.3 18.2 100 253-354 14-125 (252)
31 2z6g_A B-catenin; FULL-length, 97.6 0.017 5.7E-07 68.6 27.8 332 231-577 248-665 (780)
32 1qgr_A Protein (importin beta 97.6 0.026 8.9E-07 66.7 29.4 308 260-574 99-478 (876)
33 2z6h_A Catenin beta-1, beta-ca 97.5 0.031 1E-06 64.5 28.4 331 232-575 113-527 (644)
34 1ibr_B P95, importin beta-1 su 97.5 0.042 1.4E-06 59.4 27.8 249 289-538 129-437 (462)
35 1u6g_C TIP120 protein, CAND1; 97.5 0.018 6E-07 71.6 27.8 280 252-537 49-402 (1230)
36 3tpo_A Importin subunit alpha- 97.5 0.013 4.3E-07 66.1 24.0 275 256-537 124-448 (529)
37 4db6_A Armadillo repeat protei 97.5 0.0032 1.1E-07 61.1 16.5 85 452-536 111-207 (210)
38 4hxt_A De novo protein OR329; 97.5 0.011 3.8E-07 58.4 20.8 218 325-579 4-245 (252)
39 3now_A UNC-45 protein, SD10334 97.4 0.0057 1.9E-07 72.6 21.2 275 253-540 379-739 (810)
40 1jdh_A Beta-catenin; beta-cate 97.4 0.02 6.9E-07 63.5 24.7 301 232-542 32-389 (529)
41 2z6h_A Catenin beta-1, beta-ca 97.4 0.076 2.6E-06 61.2 29.5 301 232-542 29-386 (644)
42 3now_A UNC-45 protein, SD10334 97.3 0.021 7.1E-07 67.8 24.0 341 225-576 255-695 (810)
43 4db6_A Armadillo repeat protei 97.3 0.0034 1.1E-07 61.0 14.2 133 436-573 56-207 (210)
44 2bpt_A Importin beta-1 subunit 97.2 0.18 6.1E-06 59.3 30.2 127 230-357 381-532 (861)
45 4db8_A Armadillo-repeat protei 97.2 0.011 3.6E-07 59.1 16.9 134 436-572 98-248 (252)
46 2bpt_A Importin beta-1 subunit 97.1 0.12 4.2E-06 60.7 28.4 315 258-576 102-483 (861)
47 1te4_A Conserved protein MTH18 97.1 0.00093 3.2E-08 60.8 7.5 87 436-535 44-130 (131)
48 1u6g_C TIP120 protein, CAND1; 97.1 0.024 8E-07 70.4 22.1 240 260-538 15-284 (1230)
49 2vgl_A Adaptor protein complex 96.3 0.18 6.1E-06 58.2 20.9 97 474-573 329-431 (621)
50 1qgr_A Protein (importin beta 96.3 0.56 1.9E-05 55.1 25.4 299 234-538 345-722 (876)
51 1xm9_A Plakophilin 1; armadill 96.2 0.7 2.4E-05 50.9 24.1 279 255-540 6-362 (457)
52 3l6x_A Catenin delta-1; cateni 96.1 1.5 5E-05 50.1 26.5 116 236-352 27-161 (584)
53 2qk1_A Protein STU2; STU2P, XM 96.0 0.19 6.6E-06 50.9 16.7 70 483-552 155-234 (249)
54 3l6x_A Catenin delta-1; cateni 96.0 0.84 2.9E-05 52.1 23.6 267 270-544 27-390 (584)
55 1ibr_B P95, importin beta-1 su 95.9 0.78 2.7E-05 49.2 22.0 235 297-536 10-286 (462)
56 2vgl_A Adaptor protein complex 95.7 1.1 3.6E-05 51.7 23.2 289 234-537 91-432 (621)
57 1xqr_A HSPBP1 protein; armadil 95.7 0.037 1.3E-06 57.9 9.9 103 435-539 125-239 (296)
58 2xpi_A Anaphase-promoting comp 95.5 3.8 0.00013 45.2 30.7 262 241-523 313-583 (597)
59 3l9t_A Putative uncharacterize 95.4 0.73 2.5E-05 46.3 17.6 172 388-572 60-237 (240)
60 2qk2_A LP04448P; mini spindles 95.2 0.093 3.2E-06 52.3 10.6 101 436-541 100-208 (242)
61 3nmw_A APC variant protein; AR 94.8 1.4 4.8E-05 47.0 19.2 89 453-542 234-338 (354)
62 2xpi_A Anaphase-promoting comp 94.6 1.6 5.4E-05 48.3 19.9 292 245-561 284-585 (597)
63 3mkr_A Coatomer subunit epsilo 94.5 2.4 8.1E-05 43.3 19.5 143 245-409 11-158 (291)
64 1xm9_A Plakophilin 1; armadill 94.4 6 0.00021 43.2 23.9 308 232-541 17-409 (457)
65 3hym_B Cell division cycle pro 94.4 3.9 0.00013 40.7 20.9 255 243-518 32-297 (330)
66 1xqr_A HSPBP1 protein; armadil 94.3 0.24 8.1E-06 51.7 11.4 125 452-576 97-239 (296)
67 1lrv_A LRV, leucine-rich repea 93.2 0.006 2.1E-07 62.2 -3.1 68 255-348 54-121 (244)
68 2qk2_A LP04448P; mini spindles 93.2 2.2 7.6E-05 42.1 16.0 150 434-586 56-216 (242)
69 3nmz_A APC variant protein; pr 92.9 5.9 0.0002 43.7 20.2 61 480-540 385-452 (458)
70 3nmw_A APC variant protein; AR 92.8 1.7 5.7E-05 46.4 15.2 141 452-597 186-351 (354)
71 3opb_A SWI5-dependent HO expre 92.7 8.1 0.00028 45.3 21.6 98 436-536 608-727 (778)
72 3tjz_B Coatomer subunit gamma; 91.4 2.4 8.1E-05 45.3 14.2 225 256-533 109-348 (355)
73 3nmz_A APC variant protein; pr 91.2 15 0.0005 40.5 20.9 124 452-575 302-450 (458)
74 2y4t_A DNAJ homolog subfamily 90.7 18 0.00062 37.8 27.6 303 241-563 34-366 (450)
75 3hym_B Cell division cycle pro 90.4 13 0.00046 36.6 18.4 224 244-485 67-299 (330)
76 2qk1_A Protein STU2; STU2P, XM 90.1 5.3 0.00018 40.1 14.9 128 228-357 26-178 (249)
77 1w3b_A UDP-N-acetylglucosamine 90.0 19 0.00066 37.0 28.7 285 243-554 77-367 (388)
78 3l9t_A Putative uncharacterize 89.9 0.87 3E-05 45.8 8.4 98 429-533 65-163 (240)
79 1lsh_A Lipovitellin (LV-1N, LV 89.7 6.5 0.00022 48.1 17.8 228 147-410 310-558 (1056)
80 2gw1_A Mitochondrial precursor 89.2 25 0.00086 37.3 23.7 17 244-260 84-100 (514)
81 1fch_A Peroxisomal targeting s 87.7 16 0.00056 36.9 17.0 254 246-517 38-311 (368)
82 3tjz_B Coatomer subunit gamma; 87.7 2.9 0.0001 44.6 11.3 109 231-341 118-227 (355)
83 2y4t_A DNAJ homolog subfamily 85.3 39 0.0013 35.2 22.5 299 260-580 19-345 (450)
84 4a1s_A PINS, partner of inscut 85.3 29 0.001 35.7 17.7 123 234-358 47-181 (411)
85 1lsh_A Lipovitellin (LV-1N, LV 85.1 26 0.0009 42.7 19.3 20 390-409 348-367 (1056)
86 3ieg_A DNAJ homolog subfamily 85.0 32 0.0011 34.1 26.2 302 243-563 13-343 (359)
87 3opb_A SWI5-dependent HO expre 84.6 69 0.0024 37.6 21.7 106 434-539 545-684 (778)
88 3ro2_A PINS homolog, G-protein 84.3 20 0.00069 35.0 15.1 114 243-358 15-138 (338)
89 3mkq_B Coatomer subunit alpha; 83.5 8.3 0.00028 36.9 11.0 105 7-121 11-131 (177)
90 2pl2_A Hypothetical conserved 81.1 38 0.0013 32.1 16.1 54 309-367 8-63 (217)
91 1fch_A Peroxisomal targeting s 81.0 23 0.00078 35.8 14.4 226 243-483 74-312 (368)
92 3oc3_A Helicase MOT1, MOT1; re 79.7 14 0.00049 41.7 12.4 212 283-537 170-403 (800)
93 3ieg_A DNAJ homolog subfamily 79.2 52 0.0018 32.5 24.4 264 243-523 47-339 (359)
94 2db0_A 253AA long hypothetical 79.1 49 0.0017 32.2 18.2 61 512-574 184-245 (253)
95 4eqf_A PEX5-related protein; a 78.7 25 0.00084 35.8 13.8 227 243-483 75-308 (365)
96 3sf4_A G-protein-signaling mod 78.4 61 0.0021 32.8 20.9 114 243-358 19-142 (406)
97 3qky_A Outer membrane assembly 78.2 50 0.0017 31.8 15.8 66 288-355 33-101 (261)
98 2vq2_A PILW, putative fimbrial 77.7 42 0.0014 30.7 16.6 155 242-407 17-173 (225)
99 2gw1_A Mitochondrial precursor 77.3 76 0.0026 33.4 22.1 149 244-407 248-398 (514)
100 1w3b_A UDP-N-acetylglucosamine 77.0 69 0.0024 32.7 26.5 278 245-551 45-330 (388)
101 3qky_A Outer membrane assembly 76.1 51 0.0017 31.7 14.8 127 241-370 23-175 (261)
102 3cv0_A Peroxisome targeting si 74.9 65 0.0022 31.4 15.9 85 243-332 31-116 (327)
103 2pl2_A Hypothetical conserved 74.4 59 0.002 30.7 15.0 179 345-542 7-200 (217)
104 3ulq_A Response regulator aspa 73.4 86 0.0029 32.1 21.8 198 245-445 115-331 (383)
105 3nf1_A KLC 1, kinesin light ch 72.1 73 0.0025 30.7 16.6 163 243-408 37-222 (311)
106 3qou_A Protein YBBN; thioredox 71.2 85 0.0029 31.1 17.6 159 385-555 121-285 (287)
107 3qou_A Protein YBBN; thioredox 70.4 50 0.0017 32.9 13.3 56 307-367 118-175 (287)
108 3ulq_A Response regulator aspa 70.1 1E+02 0.0035 31.5 19.1 199 236-438 144-360 (383)
109 2ho1_A Type 4 fimbrial biogene 69.6 75 0.0026 29.9 17.8 152 244-406 48-200 (252)
110 3mkq_A Coatomer beta'-subunit; 69.1 29 0.00098 39.8 12.5 44 62-105 681-724 (814)
111 3fp2_A TPR repeat-containing p 68.8 1.2E+02 0.0042 32.0 22.3 249 248-518 217-489 (537)
112 3sf4_A G-protein-signaling mod 67.6 1.1E+02 0.0037 30.9 21.4 287 286-579 25-362 (406)
113 2vq2_A PILW, putative fimbrial 66.7 76 0.0026 28.8 18.7 9 424-432 120-128 (225)
114 4eqf_A PEX5-related protein; a 66.1 1.1E+02 0.0039 30.6 18.8 95 265-367 61-157 (365)
115 2q7f_A YRRB protein; TPR, prot 65.2 87 0.003 29.0 16.3 13 307-319 24-36 (243)
116 3fp2_A TPR repeat-containing p 64.7 1.5E+02 0.005 31.4 23.4 159 344-518 244-405 (537)
117 2ho1_A Type 4 fimbrial biogene 63.6 98 0.0033 29.0 20.6 13 348-360 76-88 (252)
118 4a1s_A PINS, partner of inscut 63.2 1.4E+02 0.0046 30.5 20.6 94 486-579 257-358 (411)
119 3mkq_A Coatomer beta'-subunit; 60.2 33 0.0011 39.2 10.7 51 63-117 724-774 (814)
120 1xi4_A Clathrin heavy chain; a 60.1 33 0.0011 43.2 10.8 104 4-114 1137-1260(1630)
121 2q7f_A YRRB protein; TPR, prot 60.1 1.1E+02 0.0037 28.3 16.7 97 264-368 18-116 (243)
122 3edt_B KLC 2, kinesin light ch 59.7 1.2E+02 0.004 28.6 17.6 142 264-408 38-196 (283)
123 1lrv_A LRV, leucine-rich repea 59.0 2.1 7.1E-05 43.3 0.2 189 293-572 55-243 (244)
124 3b2a_A TON_1937, putative unch 57.6 1.5E+02 0.0053 29.7 13.3 110 452-561 90-204 (265)
125 2yhc_A BAMD, UPF0169 lipoprote 57.0 1.3E+02 0.0044 28.2 12.9 74 243-317 14-89 (225)
126 4gmo_A Putative uncharacterize 56.6 11 0.00037 43.6 5.7 65 473-538 34-105 (684)
127 3oc3_A Helicase MOT1, MOT1; re 56.1 2.7E+02 0.0092 31.7 16.2 144 247-406 171-338 (800)
128 3tt9_A Plakophilin-2; cell adh 55.4 44 0.0015 33.1 9.3 61 476-537 55-123 (233)
129 3tt9_A Plakophilin-2; cell adh 55.3 24 0.00081 35.1 7.2 58 484-541 18-84 (233)
130 2pzi_A Probable serine/threoni 54.0 2.1E+02 0.0073 32.4 16.2 83 345-433 435-517 (681)
131 4f3v_A ESX-1 secretion system 53.5 94 0.0032 31.7 11.6 133 234-371 103-236 (282)
132 4abn_A Tetratricopeptide repea 52.6 1.1E+02 0.0037 33.0 12.8 70 244-319 113-183 (474)
133 3jxy_A Alkylpurine DNA glycosy 51.2 1.2E+02 0.0042 29.6 11.8 84 462-551 122-207 (232)
134 3mkr_A Coatomer subunit epsilo 51.1 1.9E+02 0.0067 28.6 23.9 251 278-560 10-269 (291)
135 1xi4_A Clathrin heavy chain; a 51.1 28 0.00096 43.7 8.2 70 22-100 1469-1556(1630)
136 3nf1_A KLC 1, kinesin light ch 50.5 1.8E+02 0.006 27.9 18.1 170 264-437 22-215 (311)
137 3vtx_A MAMA; tetratricopeptide 49.9 1.4E+02 0.0047 26.5 13.3 152 241-406 11-166 (184)
138 3uq3_A Heat shock protein STI1 46.1 1.8E+02 0.0062 26.8 17.1 238 233-498 5-257 (258)
139 3as5_A MAMA; tetratricopeptide 45.6 1.5E+02 0.0051 25.6 15.6 9 424-432 117-125 (186)
140 4gyw_A UDP-N-acetylglucosamine 45.3 1.8E+02 0.0061 33.7 13.7 156 238-407 12-171 (723)
141 2b6c_A Hypothetical protein EF 45.1 69 0.0024 31.2 8.7 74 473-549 123-198 (220)
142 3ro3_A PINS homolog, G-protein 44.3 1.4E+02 0.0048 24.9 11.0 132 302-434 5-146 (164)
143 2r5s_A Uncharacterized protein 44.0 76 0.0026 28.5 8.5 12 348-359 11-22 (176)
144 3as5_A MAMA; tetratricopeptide 43.7 1.6E+02 0.0054 25.4 13.7 18 244-261 19-36 (186)
145 3edt_B KLC 2, kinesin light ch 41.7 2.2E+02 0.0076 26.5 13.8 123 244-369 54-195 (283)
146 4gyw_A UDP-N-acetylglucosamine 41.4 4.3E+02 0.015 30.4 16.1 153 266-432 6-160 (723)
147 2r5s_A Uncharacterized protein 41.4 1.5E+02 0.0051 26.5 10.1 146 244-401 17-164 (176)
148 3gs3_A Symplekin, LD45768P; he 40.9 1.7E+02 0.0057 29.4 11.0 63 434-502 53-118 (257)
149 3ro2_A PINS homolog, G-protein 40.8 2.5E+02 0.0085 26.8 18.9 94 486-579 217-318 (338)
150 3q15_A PSP28, response regulat 40.8 3E+02 0.01 27.8 20.1 197 236-435 142-354 (378)
151 3mkq_B Coatomer subunit alpha; 40.7 88 0.003 29.7 8.3 94 16-115 7-103 (177)
152 2pm7_A Protein WEB1, protein t 38.4 1.2E+02 0.0041 32.6 9.9 43 74-116 225-275 (399)
153 2pm7_A Protein WEB1, protein t 38.2 1.5E+02 0.0052 31.7 10.8 37 64-100 250-286 (399)
154 4f3v_A ESX-1 secretion system 38.0 1.5E+02 0.0052 30.1 10.3 94 388-484 140-236 (282)
155 1hz4_A MALT regulatory protein 37.8 3.2E+02 0.011 27.3 25.7 246 233-483 14-280 (373)
156 1hz4_A MALT regulatory protein 36.7 3.4E+02 0.011 27.1 17.1 205 235-440 93-316 (373)
157 2vsy_A XCC0866; transferase, g 34.8 2.2E+02 0.0074 31.1 11.8 113 247-369 3-117 (568)
158 3cv0_A Peroxisome targeting si 34.2 3.2E+02 0.011 26.2 18.8 100 263-370 15-116 (327)
159 4ffb_C Protein STU2; tubulin f 33.9 3E+02 0.01 27.0 11.8 100 475-574 104-211 (278)
160 2bb6_A TCII, TC II, transcobal 33.9 1.3E+02 0.0043 32.6 9.1 150 454-605 85-282 (414)
161 3q15_A PSP28, response regulat 33.1 3.9E+02 0.013 26.9 20.8 165 271-438 103-282 (378)
162 3u0r_A Apoptosis inhibitor 5; 33.1 3.1E+02 0.011 30.3 12.0 47 473-519 64-110 (507)
163 3vtx_A MAMA; tetratricopeptide 32.9 2.5E+02 0.0087 24.6 14.9 10 423-432 113-122 (184)
164 2of3_A ZYG-9; multifunctional 31.4 1.8E+02 0.006 29.4 9.3 59 484-542 177-240 (266)
165 3gw4_A Uncharacterized protein 31.0 2.8E+02 0.0095 24.5 13.3 187 243-433 2-203 (203)
166 2e2e_A Formate-dependent nitri 30.7 1.4E+02 0.0049 26.3 8.0 119 243-372 20-144 (177)
167 2yhc_A BAMD, UPF0169 lipoprote 30.7 3.3E+02 0.011 25.3 14.2 45 288-332 22-68 (225)
168 1vsy_5 Proteasome activator BL 30.2 7.9E+02 0.027 29.5 18.6 103 452-556 776-892 (997)
169 2db0_A 253AA long hypothetical 29.8 2.8E+02 0.0095 27.0 9.6 99 232-332 122-223 (253)
170 3o2t_A Symplekin; heat repeat, 27.7 2.4E+02 0.0081 30.1 10.0 100 436-541 65-187 (386)
171 4abn_A Tetratricopeptide repea 27.7 5.7E+02 0.02 27.1 16.7 22 627-648 382-403 (474)
172 3u4t_A TPR repeat-containing p 27.5 3.8E+02 0.013 24.9 17.4 223 347-580 7-237 (272)
173 3ro3_A PINS homolog, G-protein 27.1 2.7E+02 0.0091 23.0 11.8 115 245-361 21-147 (164)
174 4ga2_A E3 SUMO-protein ligase 27.1 3.1E+02 0.011 23.8 9.8 12 421-432 35-46 (150)
175 3gyz_A Chaperone protein IPGC; 23.4 3.9E+02 0.013 23.7 11.2 119 319-443 6-130 (151)
176 2pmv_A Gastric intrinsic facto 23.3 2E+02 0.0067 30.9 8.2 179 395-573 13-211 (399)
177 4ffb_C Protein STU2; tubulin f 22.6 5.4E+02 0.019 25.0 14.9 27 293-319 14-40 (278)
178 1hxi_A PEX5, peroxisome target 21.7 2.8E+02 0.0097 23.1 7.8 20 386-405 56-75 (121)
179 3qil_A Clathrin heavy chain 1; 21.4 27 0.00091 31.3 0.8 57 9-68 27-87 (125)
180 2fo7_A Synthetic consensus TPR 21.1 3.1E+02 0.011 21.7 12.0 86 347-438 5-90 (136)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=1.5e-128 Score=1139.78 Aligned_cols=606 Identities=19% Similarity=0.295 Sum_probs=563.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHhcCChhhhHHHhcc-------cChHHHHHHHHHhcccCCCCCcH--HHHHHHHHHH
Q 005098 2 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA-------TNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIY 72 (714)
Q Consensus 2 ~lv~~iv~~~~~~n~e~~AvdlllE~~~ld~i~~~vd~-------~~~~ri~~Yl~~~~~~~~~~~~~--~vl~~~~~i~ 72 (714)
.||++||+|||+||+|+||||||||++|||+|+++||+ +||.|+|+|+++|++++++|+++ +||++++++|
T Consensus 146 ~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 146 SIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998 89999999999999999999985 7999999999
Q ss_pred hccC--CHHHHHHHHHhcCChhHHHHHHhh---cchHHHHHHHHHHHhh---hcccccccCCCCCCcchHHHHHHHHcCc
Q 005098 73 LKFE--EFPNALQIALFLDNMQYVKQIFTS---CDDLLRKKQFCYILAR---HGITLELDDDMVPDDDDRYALQDIVNNV 144 (714)
Q Consensus 73 ~~~~--~~~~al~~al~l~d~~~i~~i~~~---~~d~~~~~Qlaf~lar---q~~~~~~~~~~~~~~~~~~~l~~il~n~ 144 (714)
.+++ +|+++++|+++|||++.++++|++ |+|++++|||||+|+| |+|+.++.+.... .+..+++.+||+|+
T Consensus 226 ~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~-~e~~~kL~~ILsg~ 304 (963)
T 4ady_A 226 MNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTA-QGYDPALLNILSGL 304 (963)
T ss_dssp HHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-TTCCHHHHHHTTSH
T ss_pred HhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccc-cchhHHHHHHhCCC
Confidence 9987 999999999999999999999999 6899999999999996 5565544110000 11357899999999
Q ss_pred CcchhHHHHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccCCCcccccCCCCCCCCCccc
Q 005098 145 KLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN 224 (714)
Q Consensus 145 ~l~~~~~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~ 224 (714)
.++++|++|+++++.+|+++|+++ |++++ +| ++++|+|.+|+|||||+||++|+||+++.+
T Consensus 305 ~~~~Lyl~FL~~~n~~d~~~l~~~-K~~ld-~r--------~s~~~~A~~f~Naf~naG~~~D~~l~~~~~--------- 365 (963)
T 4ady_A 305 PTCDYYNTFLLNNKNIDIGLLNKS-KSSLD-GK--------FSLFHTAVSVANGFMHAGTTDNSFIKANLP--------- 365 (963)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHH-HHHSC-TT--------SHHHHHHHHHHHHHHTTTTCCCHHHHHCHH---------
T ss_pred ChHHHHHHHHHhccccchhhHHHH-Hhhhc-ch--------hhHHHHHHHHHHHHHhCCCCcchhhhcchh---------
Confidence 999999999999999999999987 99997 45 589999999999999999999999998766
Q ss_pred ccccccchhHHHHHHHhhhhhcccchhhHHhhhhhcc---CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCC
Q 005098 225 WLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 301 (714)
Q Consensus 225 wl~k~~~~~~~~a~aslGlI~~~~~~~~l~~l~~yL~---s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~ 301 (714)
|++|+++|+||+|++|||+||.||.++|+++|++||+ ++++++++||++|||++++|+.++ ++++|.++|.+++
T Consensus 366 Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---~~~lL~~~L~~~~ 442 (963)
T 4ady_A 366 WLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---TTDYLKNIIVENS 442 (963)
T ss_dssp HHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---HHHHHHHHHHHHS
T ss_pred hhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHcCcc
Confidence 9999999999999999999999999999999999999 678999999999999999999753 8899999998655
Q ss_pred --------hHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcC
Q 005098 302 --------ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRS 373 (714)
Q Consensus 302 --------~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~ 373 (714)
+.+|+||++|||++|+||+++++++.|+|.+.|++. .+..+|++|||++|+||||+++++.|++++++
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-- 518 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-- 518 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH--
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc--
Confidence 789999999999999999999999999999986532 33458999999999999999999999999875
Q ss_pred ccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccc
Q 005098 374 ESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAY 453 (714)
Q Consensus 374 ~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~v 453 (714)
++ +++++|++++||||+++|+++.++.+++.|..+++|+.||++++++||||+||||+.+|++|||.|.++.++ +|
T Consensus 519 -~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d--~V 594 (963)
T 4ady_A 519 -TQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND--DV 594 (963)
T ss_dssp -CS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH--HH
T ss_pred -cC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcH--HH
Confidence 34 889999999999999999999999999999999999999999999999999999999999999999998876 89
Q ss_pred cchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHH
Q 005098 454 QGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISL 533 (714)
Q Consensus 454 rr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAl 533 (714)
||+|++|||+|+++++ +++++++++|++++||+||+|+|+|||++++|||+++++++|+++++|+|++||++|++||
T Consensus 595 RraAViaLGlI~~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHHHHTSSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCch---HHHHHHHHHHhhhc---cChhHHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHHhh
Q 005098 534 GLIGSGTNNA---RIAGMLRNLSSYYY---KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFAC 607 (714)
Q Consensus 534 GlV~aGt~n~---rv~~~lr~l~~~~~---~d~~~~~~~~lA~Gll~~G~g~~tls~~~sd~~~~~~~a~agLl~~l~~~ 607 (714)
|+|++||||+ ||++++|+|+++++ +|++++||+++||||+||||||+||||+||||+++|++|++||++|+++|
T Consensus 672 G~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~w 751 (963)
T 4ady_A 672 SMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFW 751 (963)
T ss_dssp HHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTTT
T ss_pred HHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHHH
Confidence 9999999987 99999999999985 58999999999999999999999999999999999999999999999775
Q ss_pred ccccccccCchhHHHHHHhhhccccEeEeecC-CCCcceeeEEe
Q 005098 608 LDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDE-NLKPLSVPVRV 650 (714)
Q Consensus 608 ~~~~~~~~~~~h~l~~~l~lA~~Pr~li~~d~-~l~~~~v~vrv 650 (714)
-||||+||+++||+|||+||+|+ |||+|++.++.
T Consensus 752 ---------yw~pl~~~lsla~~Pt~li~l~e~dL~~p~~~~~~ 786 (963)
T 4ady_A 752 ---------YWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNC 786 (963)
T ss_dssp ---------TCGGGGGGGGGGEEECBEEEEETTTTBEECCEEEE
T ss_pred ---------HHHHHHHHHHHhcCCcEEEEecccccCCCceEEee
Confidence 23359999999999999999999 99999888865
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=2.9e-49 Score=466.34 Aligned_cols=510 Identities=19% Similarity=0.248 Sum_probs=386.8
Q ss_pred HHHHHcCCChHHHHHHHHhcCC---hhhhHHHhcccChHHHHHHHHHhccc-----------CCCCCcHHHHHHHHHHHh
Q 005098 8 VAFHMKHNAEPEAVDLLMEVED---LDLLVEHVDATNFKRTCLYLTSAAKY-----------LPGPDDMLVLDIAYMIYL 73 (714)
Q Consensus 8 v~~~~~~n~e~~AvdlllE~~~---ld~i~~~vd~~~~~ri~~Yl~~~~~~-----------~~~~~~~~vl~~~~~i~~ 73 (714)
|-|++ ++|.+|+.+||.+.. ++.-.+||++...++|..|+..+.+- -.+|+-..+.+.++..|.
T Consensus 79 vyy~L--g~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl 156 (963)
T 4ady_A 79 VYYNL--GEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCL 156 (963)
T ss_dssp HHHHH--TCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHH
T ss_pred Hheec--cchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Confidence 44555 999999999999655 56667789888888999998887643 244454679999999999
Q ss_pred ccCCHHHHHHHHHhcCChhHHHHHHhhc--ch--HHHHHHHHHHH--h---------hhcccc-------cccCCCCCC-
Q 005098 74 KFEEFPNALQIALFLDNMQYVKQIFTSC--DD--LLRKKQFCYIL--A---------RHGITL-------ELDDDMVPD- 130 (714)
Q Consensus 74 ~~~~~~~al~~al~l~d~~~i~~i~~~~--~d--~~~~~Qlaf~l--a---------rq~~~~-------~~~~~~~~~- 130 (714)
+.++|.+|+.++++.++.|.+++++.++ +| ....+=+.|.+ + |.+++. +++ .|+--
T Consensus 157 ~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~-~~dy~~ 235 (963)
T 4ady_A 157 KASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMP-NCDYLT 235 (963)
T ss_dssp HHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSS-SCCHHH
T ss_pred hCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCC-chhHHH
Confidence 9999999999999999999999999862 11 11112222333 2 112211 111 00000
Q ss_pred -------cchHHHHHHHHcC----cC-c-------------chhHHH-----------HHHHhhccCCCChhHHHHhhhc
Q 005098 131 -------DDDRYALQDIVNN----VK-L-------------SEGYLT-----------LARDIEVMEPKSPEDIYKAHLL 174 (714)
Q Consensus 131 -------~~~~~~l~~il~n----~~-l-------------~~~~~~-----------~~~~l~~~~~k~~~~iyk~~l~ 174 (714)
-++.+.+.+++.. .. + ++.|+. +.+.++|++++.+.++|++||.
T Consensus 236 a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~FL~ 315 (963)
T 4ady_A 236 LNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYNTFLL 315 (963)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHHHHHHHH
Confidence 0011222222222 10 0 123332 3467899999999999999998
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHHHHhhccCCCcccccCCCCCCCCCcccccccccchhHHHHHHHhhhhhcccchhh-H
Q 005098 175 DGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSG-L 253 (714)
Q Consensus 175 ~~~~~~~~~~dsa~~~la~~~~na~~~aG~~~d~~l~~~~~~~~~~~~~~wl~k~~~~~~~~a~aslGlI~~~~~~~~-l 253 (714)
+++.++...++..|.++-. .++.. -..++.+.|++|.|...+. +
T Consensus 316 ~~n~~d~~~l~~~K~~ld~--r~s~~---------------------------------~~A~~f~Naf~naG~~~D~~l 360 (963)
T 4ady_A 316 NNKNIDIGLLNKSKSSLDG--KFSLF---------------------------------HTAVSVANGFMHAGTTDNSFI 360 (963)
T ss_dssp HHCCCCHHHHHHHHHHSCT--TSHHH---------------------------------HHHHHHHHHHHTTTTCCCHHH
T ss_pred hccccchhhHHHHHhhhcc--hhhHH---------------------------------HHHHHHHHHHHhCCCCcchhh
Confidence 7776654444444433321 11111 1234556788998877665 3
Q ss_pred HhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc---CCChHHHHHHHHHHHHHhccCCCHhHHHHHHh
Q 005098 254 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG---REDACIRIGAIMGLGISYAGTQNDQIRHKLST 330 (714)
Q Consensus 254 ~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~---~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~ 330 (714)
..-.+|+++..+|.++||+++||+||.|+.++ .+++|.+||. ++++.++.||++|||++++|+++ ++.+.|.+
T Consensus 361 ~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-~~~~lL~~ 436 (963)
T 4ady_A 361 KANLPWLGKAQNWAKFTATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-DTTDYLKN 436 (963)
T ss_dssp HHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-HHHHHHHH
T ss_pred hcchhhhhccchHHHHHHHHHhhhhccCchHH---HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Confidence 33457899999999999999999999998766 7999999998 66789999999999999999986 68899999
Q ss_pred hhcCCC-C-----hhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHH
Q 005098 331 ILNDAK-S-----PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATA 404 (714)
Q Consensus 331 ~l~d~~-~-----~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll 404 (714)
.+.+++ + ...++++|++|||++|+||+++++++.|++.|.+. +...
T Consensus 437 ~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd------~~~~---------------------- 488 (963)
T 4ady_A 437 IIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND------SATS---------------------- 488 (963)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC------CHHH----------------------
T ss_pred HHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC------CHHH----------------------
Confidence 997432 1 23457799999999999999999999999987642 1111
Q ss_pred HHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHh
Q 005098 405 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 484 (714)
Q Consensus 405 ~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~ 484 (714)
++++++++|+.|+||||.++++.||+++.++.++ ++||++++|||++++|++ +.++.+++.|..
T Consensus 489 -----------~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e--~vrR~aalgLGll~~g~~---e~~~~li~~L~~ 552 (963)
T 4ady_A 489 -----------GEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG--NITRGLAVGLALINYGRQ---ELADDLITKMLA 552 (963)
T ss_dssp -----------HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCG---GGGHHHHHHHHH
T ss_pred -----------HHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH--HHHHHHHHHHHhhhCCCh---HHHHHHHHHHHh
Confidence 2334555666667999999999999999988775 999999999999999998 889999999999
Q ss_pred cCCHHHHhhHHHHHhhhccCCCcHHHHH-HHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHH
Q 005098 485 YGEQNIRRAVPLALGLLCISNPKVNVMD-TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLL 563 (714)
Q Consensus 485 ~~~~~vr~g~~lALGl~~aGt~~~~ai~-~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~ 563 (714)
+.+|++|+|+++++|+.||||||..+++ +|..+..|++++||++|++|+|+|++|..+ .+.++++.|.. +.||++|
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-~v~rlv~~L~~--~~d~~VR 629 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-TVPRIVQLLSK--SHNAHVR 629 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-SHHHHTTTGGG--CSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHh--cCCHHHH
Confidence 9999999999999999999999999999 777888999999999999999999999765 24444444443 5699999
Q ss_pred HHHHHHHhhhhcCCCcc----cccccCCCC-CCCChHHHHHHHHHHHh
Q 005098 564 FCVRIAQGLVHMGKGLL----TLNPYHSDR-FLLSPTALAGIVTTLFA 606 (714)
Q Consensus 564 ~~~~lA~Gll~~G~g~~----tls~~~sd~-~~~~~~a~agLl~~l~~ 606 (714)
+|+.+|+|++++|+|+. +|+++.+|. ..+++.|+.+|.++..-
T Consensus 630 ~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 630 CGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999974 689998887 68999999999888753
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.95 E-value=5.9e-08 Score=100.25 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=63.5
Q ss_pred HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHH
Q 005098 435 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTL 514 (714)
Q Consensus 435 ~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L 514 (714)
++..|++.+.++ + ..||..++.+++.+....+ .+...+..++++.++.||..++.+||-+ ++.+++..|
T Consensus 160 ~~~~L~~~l~d~-~--~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~----~~~~~~~~L 228 (280)
T 1oyz_A 160 TIPLLINLLKDP-N--GDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYR----KDKRVLSVL 228 (280)
T ss_dssp CHHHHHHHHTCS-S--HHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHT----TCGGGHHHH
T ss_pred HHHHHHHHHcCC-C--HHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCHhhHHHH
Confidence 444455544322 2 2577777777777643333 2333444455677788888888888876 366777777
Q ss_pred HHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 005098 515 SRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 554 (714)
Q Consensus 515 ~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~ 554 (714)
..+++|++ ||..|+.|+|-++- +++...|.++..
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~~----~~~~~~L~~~l~ 262 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELGD----KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHCC----GGGHHHHHHHHT
T ss_pred HHHhcCcc--HHHHHHHHHHhcCc----hhhhHHHHHHHh
Confidence 77777755 78888888887743 344455554443
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.90 E-value=1.1e-07 Score=98.28 Aligned_cols=250 Identities=12% Similarity=0.086 Sum_probs=166.8
Q ss_pred hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-HhHHHHHHh
Q 005098 252 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLST 330 (714)
Q Consensus 252 ~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~i~e~L~~ 330 (714)
+...+-+.|.+++..++..|+.+||-+.. +.++..|...+.++++.+|..|+.+||-....... ..+.+.|..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 34556677788889999999999998741 23778888899999999999999999985322111 223344432
Q ss_pred -hhcCCCChhHHHHHHHHHHHhHhcCC--CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHH
Q 005098 331 -ILNDAKSPLDVIAFSAISLGLIYVGS--CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS 407 (714)
Q Consensus 331 -~l~d~~~~~e~~~~AalaLGLi~lGs--~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L 407 (714)
.+.|+ +.+++..|+.+||-+.-+. ...++++.++..+.+ .++.+|..+ +.+|..+|.++.++.+++.+
T Consensus 98 ~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d------~~~~vR~~a-~~aL~~~~~~~~~~~L~~~l 168 (280)
T 1oyz_A 98 MALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD------KSTNVRRAT-AFAISVINDKATIPLLINLL 168 (280)
T ss_dssp HHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC------SCHHHHHHH-HHHHHTC---CCHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC------CCHHHHHHH-HHHHHhcCCHHHHHHHHHHH
Confidence 23454 4456668999999774322 134555665554321 233444433 33445778888888888876
Q ss_pred hhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCC
Q 005098 408 KTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE 487 (714)
Q Consensus 408 ~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~ 487 (714)
.+ +++..|..++.+++ ..|..+..++..|++.+.+. + ..+|..++.+++-+. ++ +.++.++..+ ++
T Consensus 169 ~d-~~~~vr~~a~~aL~--~~~~~~~~~~~~L~~~l~d~-~--~~vR~~A~~aL~~~~--~~---~~~~~L~~~l-~d-- 234 (280)
T 1oyz_A 169 KD-PNGDVRNWAAFAIN--INKYDNSDIRDCFVEMLQDK-N--EEVRIEAIIGLSYRK--DK---RVLSVLCDEL-KK-- 234 (280)
T ss_dssp TC-SSHHHHHHHHHHHH--HHTCCCHHHHHHHHHHTTCS-C--HHHHHHHHHHHHHTT--CG---GGHHHHHHHH-TS--
T ss_pred cC-CCHHHHHHHHHHHH--hhccCcHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHhC--CH---hhHHHHHHHh-cC--
Confidence 54 56778887777664 45666888888888887643 2 389999999999885 43 4455555444 44
Q ss_pred HHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcC-CchHHHHHHHHHHH
Q 005098 488 QNIRRAVPLALGLLCISNPKVNVMDTLSRLSHD-TDSEVAMAAVISLG 534 (714)
Q Consensus 488 ~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D-~~~~Vr~~AiiAlG 534 (714)
+.||..++.|||-+ +.++++..|..++.+ ++..+++.++-++.
T Consensus 235 ~~vr~~a~~aL~~i----~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 235 NTVYDDIIEAAGEL----GDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp SSCCHHHHHHHHHH----CCGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhc----CchhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 45999999999987 456889999888765 55667666665553
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.68 E-value=3.8e-07 Score=89.98 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=59.6
Q ss_pred HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHH
Q 005098 433 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 512 (714)
Q Consensus 433 ~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~ 512 (714)
...+..|.+.+.+ .+ +.+|..++.+++-+ +++ +.+ ..+..++++.++.||..++.+||-+ +..++++
T Consensus 111 ~~~~~~L~~~l~d-~~--~~vr~~a~~aL~~~--~~~---~~~-~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~ 177 (211)
T 3ltm_A 111 ERAVEPLIKALKD-ED--WFVRIAAAFALGEI--GDE---RAV-EPLIKALKDEDGWVRQSAADALGEI----GGERVRA 177 (211)
T ss_dssp GGGHHHHHHHTTC-SS--HHHHHHHHHHHHHH--CCG---GGH-HHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHH
T ss_pred HHHHHHHHHHHhC-CC--HHHHHHHHHHHHHc--CCH---HHH-HHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHH
Confidence 3344555554432 22 26777777777776 332 223 3344455777788888888888877 4677888
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 513 TLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 513 ~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
.|.++++|++..||..|+-+|+-+.-.
T Consensus 178 ~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 178 AMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 888888888888888888877766443
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.64 E-value=6.6e-07 Score=87.53 Aligned_cols=182 Identities=20% Similarity=0.211 Sum_probs=105.4
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 005098 289 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 368 (714)
Q Consensus 289 ~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~ 368 (714)
....+.+.|.+++..+|..|+..||-. | +++..+.|...+.|+ +.+++..|+.+||.+ | +.+.++.++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~--~--~~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~--~--~~~~~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKI--G--DERAVEPLIKALKDE--DAWVRRAAADALGQI--G--DERAVEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHH--C--CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH--C--CGGGHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhc--C--ChhHHHHHHHHHcCC--CHHHHHHHHHHHHhh--C--CHHHHHHHHHH
Confidence 455666666777777777777777653 2 235566666666543 234444566666654 2 23344444443
Q ss_pred HhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCC
Q 005098 369 LMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE 448 (714)
Q Consensus 369 L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~ 448 (714)
|. .+++..|..++.+++ . .|+...+..|+..+.+. +
T Consensus 85 l~---------------------------------------d~~~~vr~~a~~aL~--~--~~~~~~~~~L~~~l~d~-~ 120 (201)
T 3ltj_A 85 LK---------------------------------------DEDGWVRQSAAVALG--Q--IGDERAVEPLIKALKDE-D 120 (201)
T ss_dssp TT---------------------------------------CSSHHHHHHHHHHHH--H--HCCGGGHHHHHHHTTCS-S
T ss_pred Hc---------------------------------------CCCHHHHHHHHHHHH--H--hCcHHHHHHHHHHHcCC-C
Confidence 31 112222222222221 1 12233344455544322 2
Q ss_pred CCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHH
Q 005098 449 KGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMA 528 (714)
Q Consensus 449 ~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~ 528 (714)
+.+|..++.++|-+. ++ + +...+..++++.++.||..++.+||-+ +..+++..|..+++|++..||..
T Consensus 121 --~~vr~~a~~aL~~~~--~~---~-~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~ 188 (201)
T 3ltj_A 121 --WFVRIAAAFALGEIG--DE---R-AVEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKV 188 (201)
T ss_dssp --HHHHHHHHHHHHHHT--CG---G-GHHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHH
T ss_pred --HHHHHHHHHHHHHhC--CH---H-HHHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHH
Confidence 267777777777763 32 2 333444555777888888888888877 56788888888888888888888
Q ss_pred HHHHHHHH
Q 005098 529 AVISLGLI 536 (714)
Q Consensus 529 AiiAlGlV 536 (714)
|+-+++-+
T Consensus 189 A~~aL~~l 196 (201)
T 3ltj_A 189 AVNYLETH 196 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88887755
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.57 E-value=1.3e-06 Score=86.04 Aligned_cols=189 Identities=18% Similarity=0.169 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHH
Q 005098 357 CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV 436 (714)
Q Consensus 357 ~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i 436 (714)
++++.++.++..|.+ .+...|..+ .-+|..+|..+..+.+++.+.+ +++..|..++.+++ .. |+...+
T Consensus 16 ~~~~~~~~L~~~L~~------~~~~vR~~A-~~~L~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~--~~--~~~~~~ 83 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQD------DSYYVRRAA-AYALGKIGDERAVEPLIKALKD-EDAWVRRAAADALG--QI--GDERAV 83 (211)
T ss_dssp CCGGGHHHHHHHTTC------SSHHHHHHH-HHHHHHHCCGGGHHHHHHHTTC-SCHHHHHHHHHHHH--HH--CCGGGH
T ss_pred cCHhHHHHHHHHHcC------CCHHHHHHH-HHHHHHhCCccHHHHHHHHHcC-CCHHHHHHHHHHHH--hh--CCHHHH
Confidence 456778888887532 233444433 2334467888888888887764 57777877666554 33 455667
Q ss_pred HHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHH
Q 005098 437 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 516 (714)
Q Consensus 437 ~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~ 516 (714)
..|+..+.+. + +.+|..++.+++-+. ++ +.++. +..++.+.++.||..++.+||-+ ++.++++.|.+
T Consensus 84 ~~L~~~l~~~-~--~~vr~~a~~aL~~~~--~~---~~~~~-L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~ 150 (211)
T 3ltm_A 84 EPLIKALKDE-D--GWVRQSAAVALGQIG--DE---RAVEP-LIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIK 150 (211)
T ss_dssp HHHHHHTTCS-S--HHHHHHHHHHHHHHC--CG---GGHHH-HHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHH
T ss_pred HHHHHHHcCC-C--HHHHHHHHHHHHHhC--cH---HHHHH-HHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHH
Confidence 7777777543 2 379999999998773 43 34444 44566888999999999999988 56788999999
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHHHhhhhcC
Q 005098 517 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 576 (714)
Q Consensus 517 l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G 576 (714)
+++|++..||..|+.++|.++ .+++...|.++.+ ..++.++..+.-|++-+.-.
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIG----GERVRAAMEKLAE--TGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHH--HCCHHHHHHHHHHHHC----
T ss_pred HHcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999994 3566666666544 46888888888777655443
No 8
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.57 E-value=3.2e-06 Score=82.62 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHH
Q 005098 358 NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQ 437 (714)
Q Consensus 358 ~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~ 437 (714)
+......+++.|.+ .+...|..+ .-+|..+|..+.++.+++.+. .+++..|..++.+++ .. |+...+.
T Consensus 12 ~~~~~~~~i~~L~~------~~~~vr~~A-~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~~L~--~~--~~~~~~~ 79 (201)
T 3ltj_A 12 DPEKVEMYIKNLQD------DSYYVRRAA-AYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALG--QI--GDERAVE 79 (201)
T ss_dssp CHHHHHHHHHHTTC------SCHHHHHHH-HHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHH--HH--CCGGGHH
T ss_pred CCcchHHHHHHhcC------CCHHHHHHH-HHHHHhcCChhHHHHHHHHHc-CCCHHHHHHHHHHHH--hh--CCHHHHH
Confidence 45566777776532 233344333 223446777888899988885 457777877766554 33 4556677
Q ss_pred HHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHh
Q 005098 438 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 517 (714)
Q Consensus 438 ~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l 517 (714)
.|+..+.+. + +.+|..++-+++-+ +++ +.++. +..++.+.++.||..++.+||-+ ++..+++.|..+
T Consensus 80 ~L~~~l~d~-~--~~vr~~a~~aL~~~--~~~---~~~~~-L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~ 146 (201)
T 3ltj_A 80 PLIKALKDE-D--GWVRQSAAVALGQI--GDE---RAVEP-LIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKA 146 (201)
T ss_dssp HHHHHTTCS-S--HHHHHHHHHHHHHH--CCG---GGHHH-HHHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHH
T ss_pred HHHHHHcCC-C--HHHHHHHHHHHHHh--CcH---HHHHH-HHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHH
Confidence 777777542 3 37999999999886 343 33444 44566888999999999999988 567899999999
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHHHhh
Q 005098 518 SHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGL 572 (714)
Q Consensus 518 ~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gl 572 (714)
++|++..||..|+.++|-++ +++....|.++.+ ..++.++..+.-|++-
T Consensus 147 l~d~~~~vr~~A~~aL~~~~----~~~~~~~L~~~l~--d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGEIG----GERVRAAMEKLAE--TGTGFARKVAVNYLET 195 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHH--HCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 99999999999999999993 4556666666553 3678888888777663
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.55 E-value=2.6e-06 Score=96.19 Aligned_cols=334 Identities=11% Similarity=0.043 Sum_probs=189.2
Q ss_pred hhHHHHHHHhhhhhcccc-----hhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC--hhhHHHHHHHhccCCChHH
Q 005098 232 HGKMSAAASLGMILLWDV-----DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND--CDPALALLSEYVGREDACI 304 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~-----~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e--~d~~~~lL~~~L~~~~~~v 304 (714)
..+..|..++|.+-..-. +..+..+..++.+++..+|..++.++|.+......+ .+.++..+...+.++++.+
T Consensus 218 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 297 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297 (588)
T ss_dssp HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHH
Confidence 346666666766543211 112334445555667789999999999886532111 1225666777788888999
Q ss_pred HHHHHHHHHHHhccCCCH--------hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccc
Q 005098 305 RIGAIMGLGISYAGTQND--------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESE 376 (714)
Q Consensus 305 ~~gA~lGLGl~y~Gs~~~--------~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~ 376 (714)
|.+|+.+||-+......+ .+...+...+.|+ +..++..++.+||-+.-.-+.+...+.++..+...-..+
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Confidence 999999999876554432 2444444444564 345666788888876533333333333443332211111
Q ss_pred cCchhHhHHHHHHhHhh--cCChhhHHHHHHH---HhhchhhhhhhhHHHHHHHHh--hcCC--CHHHHHHHHhhccccC
Q 005098 377 LGEPLTRLIPLGLGLLY--LGKQESVEATAEV---SKTFNEKIRKYCDMTLLSCAY--AGTG--NVLKVQNLLGHCAQHH 447 (714)
Q Consensus 377 l~~~~~r~a~l~lgLi~--lG~~e~~~~ll~~---L~~~~~~~~r~~~~~~~glay--aGtG--n~~~i~~LL~~~~~~~ 447 (714)
++.++..+.-+++-+. +|.....+.++.. +...++.-.|..++-+++..- .|.. ....+..+++.+.++
T Consensus 376 -~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~- 453 (588)
T 1b3u_A 376 -CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH- 453 (588)
T ss_dssp -CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCS-
T ss_pred -chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC-
Confidence 2334333333444332 2322222223222 223334445555444433221 1211 134455566665443
Q ss_pred CCCccccchhHHHHHHhhcc--cchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc----HHHHHHHHHhhcCC
Q 005098 448 EKGEAYQGPAVLGIAMVAMA--EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK----VNVMDTLSRLSHDT 521 (714)
Q Consensus 448 ~~~~~vrr~avl~lalI~~~--~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~----~~ai~~L~~l~~D~ 521 (714)
+ ..||..++-+++-+.-. .+.-.+.+...+..+.++.++.+|..++.++|-++-.-+. ..++..|.++++|+
T Consensus 454 ~--~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~ 531 (588)
T 1b3u_A 454 V--YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP 531 (588)
T ss_dssp S--HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS
T ss_pred c--HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC
Confidence 2 27899999998887533 2211122222333455677899999999999987543232 35667788889999
Q ss_pred chHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHhhhccChhHHHHHHHHHhhh
Q 005098 522 DSEVAMAAVISLGLIGSGTNN----ARIAGMLRNLSSYYYKDANLLFCVRIAQGLV 573 (714)
Q Consensus 522 ~~~Vr~~AiiAlGlV~aGt~n----~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll 573 (714)
+..||.+++-++|-+...-+. +.+...+.++.. ..|+.++..+.-|++-+
T Consensus 532 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 532 VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ--DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcC--CCchhHHHHHHHHHHHh
Confidence 999999999999988753332 234445555422 45788999988887654
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.51 E-value=3.2e-06 Score=95.55 Aligned_cols=313 Identities=10% Similarity=0.006 Sum_probs=178.2
Q ss_pred HHhhhhhccCCCchhHHHHHHHHHHHhcCCCC--ChhhHHHHHHHhccCCChHHHHHHHHHHHHHhc--cCC--CHhHHH
Q 005098 253 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN--DCDPALALLSEYVGREDACIRIGAIMGLGISYA--GTQ--NDQIRH 326 (714)
Q Consensus 253 l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~--e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~--Gs~--~~~i~e 326 (714)
+..+-+++.+++...|..|+-+++-+...... ..+.++..|...+ ++++.+|..++-.||-... |.. ...+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455677788889999998888765421111 1112455555555 5667788888888874321 211 123444
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh----hHHH
Q 005098 327 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE----SVEA 402 (714)
Q Consensus 327 ~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e----~~~~ 402 (714)
.|...+.|+ +.+++..|+-+|+-+.--...+...+.+++.+.+-...+ ....+..++..++.++-.-++ ..-.
T Consensus 91 ~L~~l~~~~--~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~R~~a~~~l~~~~~~~~~~~~~~l~~ 167 (588)
T 1b3u_A 91 PLESLATVE--ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSAVKAELRQ 167 (588)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHhCc--hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444 345566788888877543333333344555443221111 223333444455555433222 2222
Q ss_pred HHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHH----HHhhccccCCCCccccchhHHHHHHhhcccch--hhhhHH
Q 005098 403 TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN----LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL--GLEMAI 476 (714)
Q Consensus 403 ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~----LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~--~~~~~~ 476 (714)
.+..+..++++..|..++-+++-..-..|....... +++.+.+ .+ +.+|..|+-+++.++-.-+. -.+.+.
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 244 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQ--DSVRLLAVEACVNIAQLLPQEDLEALVM 244 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC-SC--HHHHTTHHHHHHHHHHHSCHHHHHHHTH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC-Cc--HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333344566788888777666644333344333333 3333332 22 37899999998887654221 112344
Q ss_pred HHHHHHHhcCCHHHHhhHHHHHhhhccCCCc----HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc--------hH
Q 005098 477 RSLEHLLQYGEQNIRRAVPLALGLLCISNPK----VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN--------AR 544 (714)
Q Consensus 477 ~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~----~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n--------~r 544 (714)
..+..++++.++.||+.++-++|-++..-+. ..++..|..+++|++..||..|.-++|-+....+. +.
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 324 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHH
Confidence 4566667788899999999999988754332 35677788889999999999999999988765432 12
Q ss_pred HHHHHHHHHhhhccChhHHHHHHHHHhhhh
Q 005098 545 IAGMLRNLSSYYYKDANLLFCVRIAQGLVH 574 (714)
Q Consensus 545 v~~~lr~l~~~~~~d~~~~~~~~lA~Gll~ 574 (714)
+...+..+.+ ..++.+|..+..++|-+.
T Consensus 325 l~p~l~~~l~--d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 325 ILPCIKELVS--DANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHHHHHHT--CSCHHHHHHHHTTGGGGH
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 3333333221 345667766666666553
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.45 E-value=6.5e-05 Score=81.87 Aligned_cols=304 Identities=14% Similarity=0.120 Sum_probs=188.7
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCCCC-hh------hHHHHHHHhccCC-ChHHHHHHHHHHHHHhccCCC-------H
Q 005098 258 KYFHSTDNHVIAGALLGVGIVNCGIRND-CD------PALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN-------D 322 (714)
Q Consensus 258 ~yL~s~~~~~~~GAllaLGli~~G~~~e-~d------~~~~lL~~~L~~~-~~~v~~gA~lGLGl~y~Gs~~-------~ 322 (714)
..+.++++.++..|+..|+-+-....++ .+ .++..|...+.++ ++.+|..|+-.|+-+..++.+ .
T Consensus 27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 106 (450)
T 2jdq_A 27 EMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA 106 (450)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence 4455677778888888887653311111 00 2667777888877 788999999999988776432 2
Q ss_pred hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHH---------HHHHHHHHHhhcCccccCchhHhHHHHHHhHhh
Q 005098 323 QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE---------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLY 393 (714)
Q Consensus 323 ~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~---------~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~ 393 (714)
.++..|...+.++ +.+++..|+.+||.+.-.+ .+ ++..+++.+. +.. +..+++.++-+++-+.
T Consensus 107 ~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~~l~---~~~-~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 107 GAVPIFIELLSSE--FEDVQEQAVWALGNIAGDS--TMCRDYVLDCNILPPLLQLFS---KQN-RLTMTRNAVWALSNLC 178 (450)
T ss_dssp THHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTT---SCC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCHHHHHHHhc---CCC-CHHHHHHHHHHHHHHh
Confidence 4566777777664 3456668888999775332 22 2344444332 111 4556677777777666
Q ss_pred cCC---------hhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHH---------HHHHHHhhccccCCCCccccc
Q 005098 394 LGK---------QESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAYQG 455 (714)
Q Consensus 394 lG~---------~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~---------~i~~LL~~~~~~~~~~~~vrr 455 (714)
.+. ...++.+++.+.. +++-.+..++.+ +.+...+... .+..|++.+.+. + +.++.
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~--L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~--~~v~~ 252 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFV-SDTDVLADACWA--LSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-D--YKVVS 252 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTC-CCHHHHHHHHHH--HHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-C--HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHcc-CCHHHHHHHHHH--HHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-c--hhHHH
Confidence 543 2356666666654 344445444444 4444444322 355666666432 2 37888
Q ss_pred hhHHHHHHhhcccchhhh-----hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-------HHHHHHHHHhhcCCch
Q 005098 456 PAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDTDS 523 (714)
Q Consensus 456 ~avl~lalI~~~~~~~~~-----~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-------~~ai~~L~~l~~D~~~ 523 (714)
.++-+++-+..+.+...+ .+...+-.++++.++.+|..++.+|+-+..|++. ..++..|.++++|++.
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 999999999887652111 2334444566778899999999999999887643 2456677788889999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHH-----HHHHHHhhh-ccChhHHHHHHHHHhhhhc
Q 005098 524 EVAMAAVISLGLIGSGTNNARIAG-----MLRNLSSYY-YKDANLLFCVRIAQGLVHM 575 (714)
Q Consensus 524 ~Vr~~AiiAlGlV~aGt~n~rv~~-----~lr~l~~~~-~~d~~~~~~~~lA~Gll~~ 575 (714)
.||..|+.+++-+..+.+...+.. .+..|.... ..|+..+..+.-|++-+.-
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999998876533211111 222232222 3466666666666664443
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.29 E-value=9.2e-05 Score=80.69 Aligned_cols=294 Identities=15% Similarity=0.126 Sum_probs=185.2
Q ss_pred hHHHHHHHhhhhhc--ccc------h--hhHHhhhhhccCC-CchhHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHh
Q 005098 233 GKMSAAASLGMILL--WDV------D--SGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEY 296 (714)
Q Consensus 233 ~~~~a~aslGlI~~--~~~------~--~~l~~l~~yL~s~-~~~~~~GAllaLGli~~G~~~e~-----d~~~~lL~~~ 296 (714)
.+..|+.+++-+.. ++. + ..+..+-..|.++ ++.++..|+-+|+.+..+..... ..++..|...
T Consensus 36 ~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 115 (450)
T 2jdq_A 36 QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL 115 (450)
T ss_dssp HHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHH
Confidence 46666666665422 221 1 2344555666666 77899999999998876431100 1266778888
Q ss_pred ccCCChHHHHHHHHHHHHHhccCCC-------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCC-CC------HHHH
Q 005098 297 VGREDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS-CN------EEVA 362 (714)
Q Consensus 297 L~~~~~~v~~gA~lGLGl~y~Gs~~-------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs-~~------~~~~ 362 (714)
+.++++.+|..|+..||-+...+.. ..++..|...+.++ .+.+++..|+.+||-+.-+. .. ..++
T Consensus 116 L~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 194 (450)
T 2jdq_A 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194 (450)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred HcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 8888999999999999987654321 13566677777642 24566668889999887554 11 2355
Q ss_pred HHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh---------hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH
Q 005098 363 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 433 (714)
Q Consensus 363 e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e---------~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~ 433 (714)
..|++.+.. + ++.+.+.++-+++-+.-+..+ .++.+++.+. .+++-.+..++.+ +....+++.
T Consensus 195 ~~L~~~l~~----~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~--L~~l~~~~~ 266 (450)
T 2jdq_A 195 NVLSWLLFV----S-DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRA--VGNIVTGDD 266 (450)
T ss_dssp HHHHHHTTC----C-CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHH--HHHHTTSCH
T ss_pred HHHHHHHcc----C-CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-CCchhHHHHHHHH--HHHHhhCCh
Confidence 566655421 1 334555555566655554433 3445555554 3445555555444 445555654
Q ss_pred H---------HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhh-----hHHHHHHHHHhcCCHHHHhhHHHHHh
Q 005098 434 L---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALG 499 (714)
Q Consensus 434 ~---------~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~-----~~~~~l~~L~~~~~~~vr~g~~lALG 499 (714)
. .+..|++.+.+. + +.+|+.++.+++-+..+.+...+ .+...+-.++++.++.+|..++.+|+
T Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~-~--~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 267 IQTQVILNCSALQSLLHLLSSP-K--ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCS-S--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 445566666543 2 37899999999999876652111 22333445557789999999999999
Q ss_pred hhccC-CCc-------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 500 LLCIS-NPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 500 l~~aG-t~~-------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
-+..+ ++. ..++..|..++++++..|+..|+-+++.+..
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88765 321 2356677888899999999999999887654
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.27 E-value=9.8e-05 Score=84.90 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=76.4
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhcCCCCCh-hhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC----HhHHHHHH
Q 005098 255 QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-DPALALLSEYVGREDACIRIGAIMGLGISYAGTQN----DQIRHKLS 329 (714)
Q Consensus 255 ~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~-d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~----~~i~e~L~ 329 (714)
.+.+-+.++++++|+.|+-++|-+.. .+. +.+...+...+.++++.+|..|+++++-+|....+ .++.+.|.
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIRV---DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence 34555778899999999999998742 222 22344466778889999999999999999875443 13667788
Q ss_pred hhhcCCCChhHHHHHHHHHHHhHhcCCCC-------HHHHHHHHHHHh
Q 005098 330 TILNDAKSPLDVIAFSAISLGLIYVGSCN-------EEVAQAIIFALM 370 (714)
Q Consensus 330 ~~l~d~~~~~e~~~~AalaLGLi~lGs~~-------~~~~e~Ll~~L~ 370 (714)
..+.|++ ..++..|+.+|+-+.--..+ ...+..|+..+.
T Consensus 167 ~lL~d~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 167 DLIADSN--PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp HTTSCSC--HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred HHhCCCC--hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence 8887753 45666788888887543321 244666666553
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.27 E-value=0.00012 Score=84.23 Aligned_cols=296 Identities=14% Similarity=0.049 Sum_probs=167.9
Q ss_pred chhHHHHHHHhhhhhcccchhh-HHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChh--hHHHHHHHhccCCChHHHHH
Q 005098 231 EHGKMSAAASLGMILLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD--PALALLSEYVGREDACIRIG 307 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~~~~-l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d--~~~~lL~~~L~~~~~~v~~g 307 (714)
+..+..|.-++|-+...+.-+. ...+.+.+.++++++|-.|+.+++-++.......+ .++..|.+.|.++++.++.+
T Consensus 100 ~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 179 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 179 (591)
T ss_dssp HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHH
Confidence 3567788888887764443332 22356677789999999999999999875433222 36678888999999999999
Q ss_pred HHHHHHHHhccCCCH-------hHHHHHHhhhcCCCChhHHHHHHHH-HHHhHhcCCCCHHHHHHHHHHHhhcCccccCc
Q 005098 308 AIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAI-SLGLIYVGSCNEEVAQAIIFALMDRSESELGE 379 (714)
Q Consensus 308 A~lGLGl~y~Gs~~~-------~i~e~L~~~l~d~~~~~e~~~~Aal-aLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~ 379 (714)
|+.+|+-+.....+. ..+..|+..+.+.+ ++.....+ .++ .++..+++..+.+++.+...-.. .+
T Consensus 180 A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~---~~~q~~il~~l~--~l~~~~~~~~~~~l~~l~~~l~~--~~ 252 (591)
T 2vgl_B 180 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECT---EWGQIFILDCLS--NYNPKDDREAQSICERVTPRLSH--AN 252 (591)
T ss_dssp HHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHH--TSCCCSHHHHHHHHHHHTTCSCS--ST
T ss_pred HHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC---chHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHcC--CC
Confidence 999999876544321 34566666665432 23112222 333 34555566667777776543222 22
Q ss_pred hhHhHHHHHHhHhhcC-----ChhhHHHHH----H---HHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccC
Q 005098 380 PLTRLIPLGLGLLYLG-----KQESVEATA----E---VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 447 (714)
Q Consensus 380 ~~~r~a~l~lgLi~lG-----~~e~~~~ll----~---~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~ 447 (714)
..+++.++ -.+..++ .++..+.+. . .|.. +++..||.+.-+++....... ..++..+.......
T Consensus 253 ~~V~~ea~-~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p--~~~~~~~~~~~~~~ 328 (591)
T 2vgl_B 253 SAVVLSAV-KVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRP--EILKQEIKVFFVKY 328 (591)
T ss_dssp THHHHHHH-HHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCC--STTTTCTTTTSCCT
T ss_pred hHHHHHHH-HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCh--HHHHHHHHhheecc
Confidence 33343332 2233333 223333221 1 2333 567777776655443322211 12221111110001
Q ss_pred CCCccccchhHHHHHHhhcccchhhhhHHHHHHH---HHhcCCHHHHhhHHHHHhhhccCCC--cHHHHHHHHHhhcCCc
Q 005098 448 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH---LLQYGEQNIRRAVPLALGLLCISNP--KVNVMDTLSRLSHDTD 522 (714)
Q Consensus 448 ~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~---L~~~~~~~vr~g~~lALGl~~aGt~--~~~ai~~L~~l~~D~~ 522 (714)
+++..+|+-++--+.-+. ++ +.+..++.. ++++.++.+|..++.++|.++...+ ....++.|..++.|.+
T Consensus 329 ~d~~~Ir~~al~~L~~l~--~~---~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~ 403 (591)
T 2vgl_B 329 NDPIYVKLEKLDIMIRLA--SQ---ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV 403 (591)
T ss_dssp TSCHHHHHHHHHHHHHTC--CS---STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHHC--Ch---hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccc
Confidence 111256665554444433 32 223334443 3445678888888888888765443 3566788888888888
Q ss_pred hHHHHHHHHHHHHHcCCCCc
Q 005098 523 SEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 523 ~~Vr~~AiiAlGlV~aGt~n 542 (714)
+.|+.-++.+++-+..+..+
T Consensus 404 ~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHHHCcc
Confidence 88888888888777654443
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.26 E-value=0.00019 Score=80.58 Aligned_cols=272 Identities=15% Similarity=0.206 Sum_probs=161.9
Q ss_pred hhHHHHHHHhhhhhcccc---------hhhHHhhhhhccCCC-chhHHHHHHHHHHHhcCCCCChh-----hHHHHHHHh
Q 005098 232 HGKMSAAASLGMILLWDV---------DSGLAQIDKYFHSTD-NHVIAGALLGVGIVNCGIRNDCD-----PALALLSEY 296 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~---------~~~l~~l~~yL~s~~-~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~~ 296 (714)
..+..|+.+++-+..++. ..++..|-+.|.+++ +.++..|+.+|+-+..+...... .++..|...
T Consensus 89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (528)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence 356667777766544332 123445556666665 78999999999988775311101 256677788
Q ss_pred ccCCChHHHHHHHHHHHHHhccCCC--H-----hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC--HH----HHH
Q 005098 297 VGREDACIRIGAIMGLGISYAGTQN--D-----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN--EE----VAQ 363 (714)
Q Consensus 297 L~~~~~~v~~gA~lGLGl~y~Gs~~--~-----~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~--~~----~~e 363 (714)
+.+++..++..|+-+||-+...+.. . .++..|...+.++ .+.++...|+.+|+-+..+..+ .. ++.
T Consensus 169 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 8888899999999999987544321 1 1344556666322 2445666788888877665321 12 233
Q ss_pred HHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhc
Q 005098 364 AIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHC 443 (714)
Q Consensus 364 ~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~ 443 (714)
.|++.|. .. +..+...++.+++-+.-+..+..+.+++ .| .+..|++.+
T Consensus 248 ~L~~lL~----~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~------------------------~g---~v~~Lv~lL 295 (528)
T 4b8j_A 248 ALARLIH----SN-DEEVLTDACWALSYLSDGTNDKIQAVIE------------------------AG---VCPRLVELL 295 (528)
T ss_dssp HHHHHTT----CC-CHHHHHHHHHHHHHHTSSCHHHHHHHHH------------------------TT---CHHHHHHHT
T ss_pred HHHHHHC----CC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------cC---HHHHHHHHH
Confidence 3333321 11 2334444444555444443333222211 11 234444444
Q ss_pred cccCCCCccccchhHHHHHHhhcccchhhh-----hHHHHHHHHHhcC-CHHHHhhHHHHHhhhccCCCcH-------HH
Q 005098 444 AQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYG-EQNIRRAVPLALGLLCISNPKV-------NV 510 (714)
Q Consensus 444 ~~~~~~~~~vrr~avl~lalI~~~~~~~~~-----~~~~~l~~L~~~~-~~~vr~g~~lALGl~~aGt~~~-------~a 510 (714)
.+. + +.++..|+-+|+-+..+.+...+ .+...+..++++. ++.+|..++.+|+-+.++++.. .+
T Consensus 296 ~~~-~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 296 LHP-S--PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372 (528)
T ss_dssp TCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred cCC-C--hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence 432 2 26777788888888776652111 1223344455566 8999999999999988876432 33
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 511 MDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 511 i~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
+..|..++++.+..|+..|+.+++-+..+
T Consensus 373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 373 IGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 45667777788889999999999888765
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.22 E-value=5.8e-05 Score=85.10 Aligned_cols=309 Identities=15% Similarity=0.161 Sum_probs=184.6
Q ss_pred HHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC-h-----hhHHHHHHHhccCC-ChHHHHHHHHHHHHHhccCCC----
Q 005098 253 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-C-----DPALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN---- 321 (714)
Q Consensus 253 l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e-~-----d~~~~lL~~~L~~~-~~~v~~gA~lGLGl~y~Gs~~---- 321 (714)
+..+-..|.++++..+..|+.+|+-+-....++ . ..++..|...|.++ ++.++..|+.+|+-+..++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 344455566777778888888888664321111 0 11456777788876 788999999999987765431
Q ss_pred ---HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC-H------HHHHHHHHHHhhcCccccCchhHhHHHHHHhH
Q 005098 322 ---DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-E------EVAQAIIFALMDRSESELGEPLTRLIPLGLGL 391 (714)
Q Consensus 322 ---~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~-~------~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgL 391 (714)
..++..|...+.++ +.+++..|+.+||-+...+.. . .++..++..+.+ . +..+.+.++-+++-
T Consensus 169 ~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~-~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----N-KPSLIRTATWTLSN 241 (530)
T ss_dssp HHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----C-CHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----C-CHHHHHHHHHHHHH
Confidence 12355566666543 345666788888877533210 0 123344443321 1 34566666667776
Q ss_pred hhcCC-h--------hhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHH---------HHHHHHhhccccCCCCccc
Q 005098 392 LYLGK-Q--------ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAY 453 (714)
Q Consensus 392 i~lG~-~--------e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~---------~i~~LL~~~~~~~~~~~~v 453 (714)
+..+. + ..++.+++.+.. +++-.+..++.++ .+...++.. .+..|++.+.+. + +.+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L--~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~--~~v 315 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAI--SYLSDGPQEAIQAVIDVRIPKRLVELLSHE-S--TLV 315 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHH--HHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-C--HHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHH--HHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-C--hhh
Confidence 66554 1 245555555543 3455555555443 444455432 244566666532 2 378
Q ss_pred cchhHHHHHHhhcccchhhh-----hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-------HHHHHHHHHhhcCC
Q 005098 454 QGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDT 521 (714)
Q Consensus 454 rr~avl~lalI~~~~~~~~~-----~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-------~~ai~~L~~l~~D~ 521 (714)
+..++-+++-+..+++...+ .+...+-.++++.++.+|..++.+|+-+..+++. ..++..|.++++++
T Consensus 316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 395 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 88999999999887652111 1233444566778999999999999999887653 23456777788889
Q ss_pred chHHHHHHHHHHHHHcCCCCc-hHHHH------HHHHHHhhh-ccChhHHHHHHHHHhhhh
Q 005098 522 DSEVAMAAVISLGLIGSGTNN-ARIAG------MLRNLSSYY-YKDANLLFCVRIAQGLVH 574 (714)
Q Consensus 522 ~~~Vr~~AiiAlGlV~aGt~n-~rv~~------~lr~l~~~~-~~d~~~~~~~~lA~Gll~ 574 (714)
+..|+..|+.+++-+..+.+. +...+ .+..|.... +.|+..+..+.-|++-+.
T Consensus 396 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999988765322 11111 122222222 356766666555555443
No 17
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.22 E-value=0.00012 Score=84.82 Aligned_cols=274 Identities=13% Similarity=0.100 Sum_probs=164.1
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC--HhHHHHHHhhh
Q 005098 255 QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLSTIL 332 (714)
Q Consensus 255 ~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--~~i~e~L~~~l 332 (714)
.+.+-|.++++++++-|+-++|.+... .-.+.+...+...+.++++.+|..|+++++-+|.+..+ +++.+.|.+.+
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL 188 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLL 188 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTST
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence 455667789999999999999998531 11123456667778889999999999999999986532 13344444455
Q ss_pred cCCCChhHHHHHHHHHHHhHhcCCCCHHH-------HHHHHHHHhhc----Cccc-----cCchhHhHHHH-HHhHhhcC
Q 005098 333 NDAKSPLDVIAFSAISLGLIYVGSCNEEV-------AQAIIFALMDR----SESE-----LGEPLTRLIPL-GLGLLYLG 395 (714)
Q Consensus 333 ~d~~~~~e~~~~AalaLGLi~lGs~~~~~-------~e~Ll~~L~~~----~~~~-----l~~~~~r~a~l-~lgLi~lG 395 (714)
.|+ +..++..|..+|+-+ +..+.+. +..++..|... ...+ ..++|.+...+ .++.+.-.
T Consensus 189 ~D~--d~~V~~~Al~~L~~i--~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 189 NEK--NHGVLHTSVVLLTEM--CERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TCC--CHHHHHHHHHHHHHH--CCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred CCC--CHhHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 554 345555777777765 4444432 23344333221 0000 13667765544 33333322
Q ss_pred ChhhHHHHHHHHhhc---------hhhhhhhhHHHHHHHHhhcCCCH---HHHHHHHhhccccCCCCccccchhHHHHHH
Q 005098 396 KQESVEATAEVSKTF---------NEKIRKYCDMTLLSCAYAGTGNV---LKVQNLLGHCAQHHEKGEAYQGPAVLGIAM 463 (714)
Q Consensus 396 ~~e~~~~ll~~L~~~---------~~~~~r~~~~~~~glayaGtGn~---~~i~~LL~~~~~~~~~~~~vrr~avl~lal 463 (714)
.++..+.+++.|... .++-..+.++-+ +...++... .+++.|..++.+. + +++|..++.+++.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~--i~~l~~~~~l~~~a~~~L~~~L~~~-d--~~vr~~aL~~L~~ 339 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLT--IMDIKSESGLRVLAINILGRFLLNN-D--KNIRYVALTSLLK 339 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH--HHHSCCCHHHHHHHHHHHHHHHTCS-S--TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHhCC-C--CchHHHHHHHHHH
Confidence 223333333322221 112223333222 223333221 3566666666543 2 3899999999999
Q ss_pred hhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 464 VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 464 I~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
+....|..-+.....+-..+.+.|+.||.-+.-.|.-++-.++-..+++.|..++.+.+.++|..++.++|-+...
T Consensus 340 i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 340 TVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9877762111111222233467789999988888877766666677888899999899999999999999888664
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.18 E-value=0.00011 Score=82.80 Aligned_cols=293 Identities=14% Similarity=0.122 Sum_probs=181.4
Q ss_pred hHHHHHHHhhhhhccc--c-------hhhHHhhhhhccCC-CchhHHHHHHHHHHHhcCCCCChh-----hHHHHHHHhc
Q 005098 233 GKMSAAASLGMILLWD--V-------DSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYV 297 (714)
Q Consensus 233 ~~~~a~aslGlI~~~~--~-------~~~l~~l~~yL~s~-~~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~~L 297 (714)
.+..|+.+++-+.... . ..++..|-.+|.++ ++.++.-|+.+|+-+..+.....+ .++..|...+
T Consensus 103 ~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 182 (530)
T 1wa5_B 103 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182 (530)
T ss_dssp HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH
Confidence 4666777776553321 1 12455566677765 778999999999988765311000 1345666677
Q ss_pred cCCChHHHHHHHHHHHHHhccCCC-------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCC-C--CH----HHHH
Q 005098 298 GREDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS-C--NE----EVAQ 363 (714)
Q Consensus 298 ~~~~~~v~~gA~lGLGl~y~Gs~~-------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs-~--~~----~~~e 363 (714)
.+++..++..|+-+||-+...+.. ..++..|...+.++ +.++...|+.+|+-+.-+. . .. .++.
T Consensus 183 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 183 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 778889999999999987654311 13566677777663 3456667888999877654 1 11 2344
Q ss_pred HHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH---------HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHH
Q 005098 364 AIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV---------EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL 434 (714)
Q Consensus 364 ~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~---------~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~ 434 (714)
.|+..|. .. +..+...++-+++-+.-+..+.. +.+++.+. .+++-.+..++.++ ....+++..
T Consensus 261 ~L~~lL~----~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L--~~l~~~~~~ 332 (530)
T 1wa5_B 261 TLAKLIY----SM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAV--GNIVTGNDL 332 (530)
T ss_dssp HHHHHTT----CC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHH--HHHTTSCHH
T ss_pred HHHHHHc----CC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHH--HHHHcCCHH
Confidence 4444332 11 34455566667777666655433 33444444 33455555555444 444555533
Q ss_pred ---------HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh-----hhHHHHHHHHHhcCCHHHHhhHHHHHhh
Q 005098 435 ---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGL 500 (714)
Q Consensus 435 ---------~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~-----~~~~~~l~~L~~~~~~~vr~g~~lALGl 500 (714)
.+..|++.+.+. + ..+|..|+.+|+-+..+.+... ..+...+-.++++.++.+|..++.||+-
T Consensus 333 ~~~~~~~~~~l~~L~~lL~~~-~--~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 409 (530)
T 1wa5_B 333 QTQVVINAGVLPALRLLLSSP-K--ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409 (530)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334555666543 2 3789999999999987655111 1122233345577899999999999998
Q ss_pred hccC-CC---------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 501 LCIS-NP---------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 501 ~~aG-t~---------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
++.+ ++ ...++..|..++.+++..|+..|+-+++-+..
T Consensus 410 l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 8765 33 12356777888889999999998888876653
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.11 E-value=0.00023 Score=79.98 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=165.2
Q ss_pred hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC-hh-----hHHHHHHHhccCCC-hHHHHHHHHHHHHHhccCCCH--
Q 005098 252 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CD-----PALALLSEYVGRED-ACIRIGAIMGLGISYAGTQND-- 322 (714)
Q Consensus 252 ~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e-~d-----~~~~lL~~~L~~~~-~~v~~gA~lGLGl~y~Gs~~~-- 322 (714)
.+..+-..|.++++..+..|+.+|+-+-++..++ .+ .++..|...|.+++ +.++..|+.+|+-+..++...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4666667777778888888888887776554311 11 13456666777665 778888888888876654321
Q ss_pred -----hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHH-----HHHhhcC-ccccCchhHhHHHHHHhH
Q 005098 323 -----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAII-----FALMDRS-ESELGEPLTRLIPLGLGL 391 (714)
Q Consensus 323 -----~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll-----~~L~~~~-~~~l~~~~~r~a~l~lgL 391 (714)
.++..|...+.+ .+.+++..|+.+||-+... +.+..+.++ +.|...- ... +..+.+.++-+++-
T Consensus 155 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~--~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGD--SPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHT--CHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC--ChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 144555555554 3777788888888876422 222211111 1111110 011 22233333333333
Q ss_pred hhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchh
Q 005098 392 LYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG 471 (714)
Q Consensus 392 i~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~ 471 (714)
+..+.+...... ....+..|++.+.+. + +.++..++-+++-+..+.+..
T Consensus 230 L~~~~~~~~~~~----------------------------~~~~l~~L~~lL~~~-~--~~v~~~a~~aL~~l~~~~~~~ 278 (528)
T 4b8j_A 230 FCRGKPQPSFEQ----------------------------TRPALPALARLIHSN-D--EEVLTDACWALSYLSDGTNDK 278 (528)
T ss_dssp HHCSSSCCCHHH----------------------------HTTHHHHHHHHTTCC-C--HHHHHHHHHHHHHHTSSCHHH
T ss_pred HHcCCCCCcHHH----------------------------HHHHHHHHHHHHCCC-C--HHHHHHHHHHHHHHHcCCHHH
Confidence 332211100000 012344455554332 2 267777777888777665411
Q ss_pred hh-----hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-------HHHHHHHHHhhcCC-chHHHHHHHHHHHHHcC
Q 005098 472 LE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDT-DSEVAMAAVISLGLIGS 538 (714)
Q Consensus 472 ~~-----~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-------~~ai~~L~~l~~D~-~~~Vr~~AiiAlGlV~a 538 (714)
.+ .+...+-.++++.++.+|..++.+||-++.+++. ..++..|..+++++ +..|+..|+.+++-+..
T Consensus 279 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 279 IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 11 1223344556778899999999999999887653 33577788888888 99999999999999988
Q ss_pred CCCch-------HHHHHHHHHHhhhccChhHHHHHHHHHhhhhcC
Q 005098 539 GTNNA-------RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 576 (714)
Q Consensus 539 Gt~n~-------rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G 576 (714)
|+.+. .+...|-++.+ +.++..+..+..|+|-+..+
T Consensus 359 ~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 359 GNKDQIQAVINAGIIGPLVNLLQ--TAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcC
Confidence 64421 11112222221 34778888888888877665
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.03 E-value=0.00051 Score=68.31 Aligned_cols=212 Identities=20% Similarity=0.198 Sum_probs=126.4
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCC-C------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHH-
Q 005098 290 LALLSEYVGREDACIRIGAIMGLGISYAGTQ-N------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV- 361 (714)
Q Consensus 290 ~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~-~------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~- 361 (714)
+..|...|.++++.++..|+..|+-...+.. + ..+++.|.+.+.+++ .+++..|+.+|+-+..+ +++.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~--~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASG--PDEAI 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTS--CHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcC--ChHHH
Confidence 4556677777777788888888877655543 1 135666677776543 45666788888866432 2332
Q ss_pred --------HHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH
Q 005098 362 --------AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 433 (714)
Q Consensus 362 --------~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~ 433 (714)
+..++..|. .+ +..+.+.++-+++-+..+.++..+.+++ .
T Consensus 80 ~~~~~~~~i~~l~~ll~----~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~------------------------~--- 127 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLT----ST-DSEVQKEAARALANIASGPDEAIKAIVD------------------------A--- 127 (252)
T ss_dssp HHHHHTTHHHHHHHHTT----CS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH------------------------T---
T ss_pred HHHHHCCCHHHHHHHHc----CC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------C---
Confidence 333333321 11 3344445544555444333332222111 0
Q ss_pred HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh-----hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-
Q 005098 434 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK- 507 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~-----~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~- 507 (714)
..+..|++.+.+.. +.++..++-+++-+..+.+... ..+...+-.++++.++.+|..++.+|+-++.+++.
T Consensus 128 ~~i~~L~~~l~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 128 GGVEVLVKLLTSTD---SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp THHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred CCHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 13455555554322 2677888888888877654211 11334455566778899999999999988876543
Q ss_pred ------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 508 ------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 508 ------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
..+++.|.+++++++..|+..|..+++-+....
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 235677888888888899998888888776543
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.00 E-value=0.00072 Score=76.16 Aligned_cols=276 Identities=14% Similarity=0.128 Sum_probs=165.7
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhcCCCC-Chhh-----HHHHHHHhccC-CChHHHHHHHHHHHHHhccCCCH------
Q 005098 256 IDKYFHSTDNHVIAGALLGVGIVNCGIRN-DCDP-----ALALLSEYVGR-EDACIRIGAIMGLGISYAGTQND------ 322 (714)
Q Consensus 256 l~~yL~s~~~~~~~GAllaLGli~~G~~~-e~d~-----~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~~------ 322 (714)
|-+.+.|++...+.-|+-++--+-+...+ ..|. ++..|.+.|.. +++.+|..|+-+|+-+..|+.+.
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~ 141 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 141 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33445566666666666666533322111 1121 34567777864 45789999999999887776422
Q ss_pred -hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC-HH------HHHHHHHHHhhcCccccCchhHhHHHHHHhHhhc
Q 005098 323 -QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-EE------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL 394 (714)
Q Consensus 323 -~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~-~~------~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~l 394 (714)
..+..|...|.++ +.+++..|+.+||-+...+.. .+ .+..++..+.............|.++.+++-+..
T Consensus 142 ~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 142 GGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp TTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 1345566666654 456667899999987532211 11 1334444432211111123455666666666655
Q ss_pred CChh-----h----HHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHH---------HHHhhccccCCCCccccch
Q 005098 395 GKQE-----S----VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQ---------NLLGHCAQHHEKGEAYQGP 456 (714)
Q Consensus 395 G~~e-----~----~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~---------~LL~~~~~~~~~~~~vrr~ 456 (714)
++.. . .+.+.+.+ ..+++-.+..++. ++.+...++...++ .|...+.+. + ..++..
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~--aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~--~~v~~~ 293 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW--AISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-E--LPIVTP 293 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHH--HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-C--HHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHH--HHHHHhhchhhhHHHHHhcccchhhhhhhcCC-C--hhhhhH
Confidence 5422 1 22233333 3344545544444 45666666654333 345555432 2 278889
Q ss_pred hHHHHHHhhcccchhhhhHHHHH--------HHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhhcCC
Q 005098 457 AVLGIAMVAMAEELGLEMAIRSL--------EHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDT 521 (714)
Q Consensus 457 avl~lalI~~~~~~~~~~~~~~l--------~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~D~ 521 (714)
++-+++-+..+++ +....++ ..|+++.++.+|..++.+|+-+++++.+. .++..|..++++.
T Consensus 294 al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 294 ALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHhhcCCH---HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 9999999988876 3333332 34567788999999999999999887542 3456778888999
Q ss_pred chHHHHHHHHHHHHHcCCCCc
Q 005098 522 DSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 522 ~~~Vr~~AiiAlGlV~aGt~n 542 (714)
+..|+..|..|++-+..+.+.
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHccCCH
Confidence 999999999999887766543
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.91 E-value=0.0017 Score=73.42 Aligned_cols=245 Identities=15% Similarity=0.134 Sum_probs=150.1
Q ss_pred HHHHHHHhccC-CChHHHHHHHHHHHHHhccCCCH-------hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHH
Q 005098 289 ALALLSEYVGR-EDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE 360 (714)
Q Consensus 289 ~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~~-------~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~ 360 (714)
++..|...|.. +++.++..|+.+|+-+..|+... .++..|...+.++ +.+++..|+.+||-+-.. +++
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~--~~~ 195 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGA--GSA 195 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT--CHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcc--CHH
Confidence 34556667754 45789999999999887776432 1345566666554 345666899999977422 222
Q ss_pred H---------HHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh-----hHHHHHH---HHhhchhhhhhhhHHHHH
Q 005098 361 V---------AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-----SVEATAE---VSKTFNEKIRKYCDMTLL 423 (714)
Q Consensus 361 ~---------~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e-----~~~~ll~---~L~~~~~~~~r~~~~~~~ 423 (714)
. +..++..|.............|.++..++-+..++.. .+...+. .+...+++-.+..++++
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~a- 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA- 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHH-
Confidence 2 2334443321111111234556666666666655432 1222222 23334455555544444
Q ss_pred HHHhhcCCCHHHHH---------HHHhhccccCCCCccccchhHHHHHHhhcccchhhhh-----HHHHHHHHHhcCCHH
Q 005098 424 SCAYAGTGNVLKVQ---------NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQN 489 (714)
Q Consensus 424 glayaGtGn~~~i~---------~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~-----~~~~l~~L~~~~~~~ 489 (714)
++|...++...++ .|...+.+. + ..++..++-+++-+..+++..... +...+-.|+++.++.
T Consensus 275 -L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~--~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~ 350 (529)
T 3tpo_A 275 -ISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-E--LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN 350 (529)
T ss_dssp -HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHH
T ss_pred -HHHhhhhhhhhHHHHHhccchHHHHHHhcCC-C--hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHH
Confidence 5566666644333 344444332 2 278888999999998887622111 223355677888999
Q ss_pred HHhhHHHHHhhhccCCCcH-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 490 IRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 490 vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
+|..++.+|+-+++|+... .++..|..++++.+..|+..|+.|++-+..+.+.
T Consensus 351 i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH
Confidence 9999999999999887643 3466777888999999999999999987765443
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.83 E-value=0.0035 Score=74.76 Aligned_cols=317 Identities=11% Similarity=0.053 Sum_probs=174.7
Q ss_pred ccCCCchhHHHHHHHHHHHhcCCC-CChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH-------hHHHHHHhh
Q 005098 260 FHSTDNHVIAGALLGVGIVNCGIR-NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-------QIRHKLSTI 331 (714)
Q Consensus 260 L~s~~~~~~~GAllaLGli~~G~~-~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~-------~i~e~L~~~ 331 (714)
+.++++.+|..+..+++.+..... ..-...+..|...+.+++..++.+++..|+.+.-..... ...+.+.|.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~ 178 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPK 178 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHH
Confidence 445667888888888887753210 111127788888888888899999999999876543321 113334443
Q ss_pred ----hcCCCChhHHHHHHHHHHHhHhcCCCCHHH---HHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh------
Q 005098 332 ----LNDAKSPLDVIAFSAISLGLIYVGSCNEEV---AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE------ 398 (714)
Q Consensus 332 ----l~d~~~~~e~~~~AalaLGLi~lGs~~~~~---~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e------ 398 (714)
+.|+ +.+++..|.-+++-+.-+. .... .+.+++.+......+ .+.+++.++-+++-+.-...+
T Consensus 179 l~~~l~~~--~~~vR~~A~~aL~~~~~~~-~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l 254 (852)
T 4fdd_A 179 FLQFFKHS--SPKIRSHAVACVNQFIISR-TQALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM 254 (852)
T ss_dssp HTTTTTCS--SHHHHHHHHHHHHTTTTTT-CHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3443 3456556777777544332 2211 123333333221111 344556665566655433332
Q ss_pred --hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCC---------HHHHHHHHhhcc----------cc----CCC----
Q 005098 399 --SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN---------VLKVQNLLGHCA----------QH----HEK---- 449 (714)
Q Consensus 399 --~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn---------~~~i~~LL~~~~----------~~----~~~---- 449 (714)
-.+.+++.+.. +++-.|..++-.+. ..+.... ...+..+++... .+ .++
T Consensus 255 ~~l~~~l~~~~~~-~~~~vr~~a~e~l~-~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 255 HNIVEYMLQRTQD-QDENVALEACEFWL-TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp HHHHHHHHHHHTC-SSHHHHHHHHHHHH-HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHccC-CcHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 12223333333 34444444332211 1111111 122333443331 11 000
Q ss_pred -CccccchhHHHHHHhhcccchhhhh---HHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc------HHHHHHHHHhhc
Q 005098 450 -GEAYQGPAVLGIAMVAMAEELGLEM---AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSH 519 (714)
Q Consensus 450 -~~~vrr~avl~lalI~~~~~~~~~~---~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~------~~ai~~L~~l~~ 519 (714)
+-.+|+.+.-+++.++-.-+ .+. +...+..++++.++.+|.+++.|+|-+.-|.+. ..++..|.++++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~--~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYR--DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence 01467788878777654322 122 333444555678999999999999998777653 457778888899
Q ss_pred CCchHHHHHHHHHHHHHcCCC----CchHHHHHHHHHHhhh-ccChhHHHHHHHHHhhhhcCCCccccccc
Q 005098 520 DTDSEVAMAAVISLGLIGSGT----NNARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLLTLNPY 585 (714)
Q Consensus 520 D~~~~Vr~~AiiAlGlV~aGt----~n~rv~~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G~g~~tls~~ 585 (714)
|++..||..|..++|-+.... ...-+..++..|.+.. ..++.++-.+.-|++-++-+.|.. +.|+
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~ 480 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPY 480 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhH
Confidence 999999999999998765421 1122334444444332 357788888888888776544432 5553
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.80 E-value=0.00064 Score=78.60 Aligned_cols=306 Identities=16% Similarity=0.074 Sum_probs=167.2
Q ss_pred cchhhHHhhhhhccCCC-chhHHHHHHHHHHHhcCCCCChh---hHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHh
Q 005098 248 DVDSGLAQIDKYFHSTD-NHVIAGALLGVGIVNCGIRNDCD---PALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ 323 (714)
Q Consensus 248 ~~~~~l~~l~~yL~s~~-~~~~~GAllaLGli~~G~~~e~d---~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~ 323 (714)
+...++..+-+++.+++ +..|.|.+ ++...... +.| -+.+.|..-+.++++.+|.-|+-+||.+. .++
T Consensus 67 d~~~~~~~vik~~~s~~~~~Krl~Yl-~~~~~~~~---~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~ 138 (618)
T 1w63_A 67 PAHFGQLECLKLIASQKFTDKRIGYL-GAMLLLDE---RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSE 138 (618)
T ss_dssp CCGGGHHHHHHHHHSSSHHHHHHHHH-HHHHHCCC---CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHH
T ss_pred CCcchHHHHHHHHcCCchHHHHHHHH-HHHHHhCC---CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHH
Confidence 34444333334454544 34555555 44433221 122 13456667788899999999999999864 355
Q ss_pred HHHHHH----hhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH-HHhHhhcCChh
Q 005098 324 IRHKLS----TILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL-GLGLLYLGKQE 398 (714)
Q Consensus 324 i~e~L~----~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l-~lgLi~lG~~e 398 (714)
+.+.+. ..+.|+ +..++..|+++++-++-+. ++.++.++..+.+.-. + .++.++.+++ +++-+.-..++
T Consensus 139 ~~~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~-D-~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 139 MCRDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLN-E-KNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTT-C-CCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhC-C-CCHhHHHHHHHHHHHHHHhChH
Confidence 655544 444564 4566779999999998754 3455544444332211 1 3334444433 33333222222
Q ss_pred -------hHHHHHHHHhh--------------chhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccc----c-CCC--C
Q 005098 399 -------SVEATAEVSKT--------------FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ----H-HEK--G 450 (714)
Q Consensus 399 -------~~~~ll~~L~~--------------~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~----~-~~~--~ 450 (714)
.++.+++.|.. ..+|+.+.. +...+...+..+....++++.++.. . ... .
T Consensus 213 ~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~--il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 213 MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR--ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH--HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 13334444443 234544432 3344555666665433332222211 0 000 0
Q ss_pred ccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHH----HHHHHhhcCCchHHH
Q 005098 451 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM----DTLSRLSHDTDSEVA 526 (714)
Q Consensus 451 ~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai----~~L~~l~~D~~~~Vr 526 (714)
..+...++-.+.-+.. ++.-.+.+...+..++.+.++++|+.+..+|+.+... ++.++ +.+...++|+|..||
T Consensus 291 ~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~~~~~~i~~~l~d~d~~Ir 367 (618)
T 1w63_A 291 NAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQRHRSTIVDCLKDLDVSIK 367 (618)
T ss_dssp HHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHGGGHHHHHHGGGSSCHHHH
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHccCCChhHH
Confidence 0222233333332211 1100123556666777888999999999999988643 33443 355666789999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHhhhc-cChhHHHHHHHHHhhhhc
Q 005098 527 MAAVISLGLIGSGTNNARIAGMLRNLSSYYY-KDANLLFCVRIAQGLVHM 575 (714)
Q Consensus 527 ~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~-~d~~~~~~~~lA~Gll~~ 575 (714)
..|+-.+.-+.-.+|- ..++++|..|.. .|+..+-.+.-++|-+..
T Consensus 368 ~~alelL~~l~~~~nv---~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 368 RRAMELSFALVNGNNI---RGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHCCSSST---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9988887776554442 344566666543 577778888888887764
No 25
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.75 E-value=6.1e-05 Score=68.78 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHH
Q 005098 434 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT 513 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~ 513 (714)
..+..+...+.+. + ..+|..|+.+++-+ +++ .++. +..++++.++.||..++.+||-+ ++..+++.
T Consensus 12 ~~~~~l~~~L~~~-~--~~vR~~A~~~L~~~--~~~----~~~~-L~~~L~d~~~~vR~~A~~aL~~~----~~~~a~~~ 77 (131)
T 1te4_A 12 SGLVPRGSHMADE-N--KWVRRDVSTALSRM--GDE----AFEP-LLESLSNEDWRIRGAAAWIIGNF----QDERAVEP 77 (131)
T ss_dssp ---------CCSS-C--CCSSSSCCSSTTSC--SST----THHH-HHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHH
T ss_pred ccHHHHHHHhcCC-C--HHHHHHHHHHHHHh--Cch----HHHH-HHHHHcCCCHHHHHHHHHHHHhc----CCHHHHHH
Confidence 3445566666432 2 27888888877754 343 2444 44455778899999999999987 46788999
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHHHh
Q 005098 514 LSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQG 571 (714)
Q Consensus 514 L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~G 571 (714)
|.++++|++..||..|+.++|.++ +++....|.++.+ ..|+.++..+.-|+|
T Consensus 78 L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~--d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 78 LIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAE--TGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 998999999999999999999885 3455555555433 467788888887776
No 26
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.69 E-value=0.0047 Score=73.67 Aligned_cols=297 Identities=12% Similarity=0.040 Sum_probs=161.9
Q ss_pred hHHHHHHHhhhhhcc----cchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC---------hhhHHHHHHHhccC
Q 005098 233 GKMSAAASLGMILLW----DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND---------CDPALALLSEYVGR 299 (714)
Q Consensus 233 ~~~~a~aslGlI~~~----~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e---------~d~~~~lL~~~L~~ 299 (714)
.+..++..++.|-.. ...+.+..+...+.+.+...+-+++.+|+.+....... .+.++..|...+.+
T Consensus 106 vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 185 (852)
T 4fdd_A 106 IRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 185 (852)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC
Confidence 444555555554322 23344555666677778889999999999876432211 22344455556677
Q ss_pred CChHHHHHHHHHHHHHhccCCC------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC------HHHHHHHHH
Q 005098 300 EDACIRIGAIMGLGISYAGTQN------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN------EEVAQAIIF 367 (714)
Q Consensus 300 ~~~~v~~gA~lGLGl~y~Gs~~------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~------~~~~e~Ll~ 367 (714)
++..+|..|+-+|+-...+..+ .+++..|...+.|+ +.+++..|+-+|+.+.-.... +++++.++.
T Consensus 186 ~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~ 263 (852)
T 4fdd_A 186 SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE--EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263 (852)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 8889999999998754332221 13455555555554 345666777788876532211 123333333
Q ss_pred HHhhcCccccCchhHhHHHH-HHhHhhcCCh------------hhHHHHHHHHh----------hc--h---------hh
Q 005098 368 ALMDRSESELGEPLTRLIPL-GLGLLYLGKQ------------ESVEATAEVSK----------TF--N---------EK 413 (714)
Q Consensus 368 ~L~~~~~~~l~~~~~r~a~l-~lgLi~lG~~------------e~~~~ll~~L~----------~~--~---------~~ 413 (714)
.+. . .+.-.|..++ .+. .+++. .-++.+++.+. .. + +.
T Consensus 264 ~~~----~--~~~~vr~~a~e~l~--~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 264 RTQ----D--QDENVALEACEFWL--TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHT----C--SSHHHHHHHHHHHH--HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred Hcc----C--CcHHHHHHHHHHHH--HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 321 1 2223333332 222 22221 11222333331 11 0 11
Q ss_pred hhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCC-CCccccchhHHHHHHhhcccchh----hhhHHHHHHHHHhcCCH
Q 005098 414 IRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMVAMAEELG----LEMAIRSLEHLLQYGEQ 488 (714)
Q Consensus 414 ~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~-~~~~vrr~avl~lalI~~~~~~~----~~~~~~~l~~L~~~~~~ 488 (714)
-.|..++-+++-..-..|+ ..+..++.++.+... ++..+|.+++.++|-|+-+-+.. .+.+...+-.++++.++
T Consensus 336 ~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 2244444333322222232 333444444332111 11378899999999997654310 02233344455678899
Q ss_pred HHHhhHHHHHhhhccCCC-------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 489 NIRRAVPLALGLLCISNP-------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 489 ~vr~g~~lALGl~~aGt~-------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
.||..++.++|-.+...+ ...++..|.+.++|++..||.+|..|++.+.-+.
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999997764321 2456677777788999999999999998876443
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.67 E-value=0.0019 Score=76.74 Aligned_cols=280 Identities=15% Similarity=0.108 Sum_probs=160.1
Q ss_pred hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHhccC-CChHHHHHHHHHHHHHhccCCC----
Q 005098 252 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN-----DCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN---- 321 (714)
Q Consensus 252 ~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~-----e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~---- 321 (714)
++..|.++|.+++..++.-|+.+|+.+.....+ +...++..|...|.+ ++..++..|+-.|.-......+
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i 230 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAI 230 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 455566777788899999999999987653100 011255666666654 4778888888888765332211
Q ss_pred --HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCH-------HHHHHHHHHHhhcCccccCchhHhHHHHHHhHh
Q 005098 322 --DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-------EVAQAIIFALMDRSESELGEPLTRLIPLGLGLL 392 (714)
Q Consensus 322 --~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~-------~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi 392 (714)
..++..|...+.++ +.+++..|+.+|+-+..++.+. .++..++..|.+ . +.++.+.++-++..+
T Consensus 231 ~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~----~-~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----T-NVKFLAITTDCLQIL 303 (780)
T ss_dssp HHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----C-CHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc----C-CHHHHHHHHHHHHHH
Confidence 13556677777654 3456668888999887664432 233445554321 1 334444444455555
Q ss_pred hcCCh---------hhHHHHHHHHhhchhhhhhhhHHHH-HHHHhhcCCCH------HHHHHHHhhccccCCCCccccch
Q 005098 393 YLGKQ---------ESVEATAEVSKTFNEKIRKYCDMTL-LSCAYAGTGNV------LKVQNLLGHCAQHHEKGEAYQGP 456 (714)
Q Consensus 393 ~lG~~---------e~~~~ll~~L~~~~~~~~r~~~~~~-~glayaGtGn~------~~i~~LL~~~~~~~~~~~~vrr~ 456 (714)
..+.. +.++.+++.+...+....+..++.+ ..++. ...+. .++..|+..+.+. + +.+++.
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~-~--~~~~~~ 379 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP-S--QRLVQN 379 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCS-C--HHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCC-c--hHHHHH
Confidence 55433 2345556655543332222222222 12221 11111 1345666766543 2 256666
Q ss_pred hHHHHHHhhcccc--hhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-------HHHHHHHHHhhcCC-c-hHH
Q 005098 457 AVLGIAMVAMAEE--LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDT-D-SEV 525 (714)
Q Consensus 457 avl~lalI~~~~~--~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-------~~ai~~L~~l~~D~-~-~~V 525 (714)
++-.++-+....+ .+.+.+...+-.++++.++.+|..++.+|+-++.+++. ..+++.|.+++.++ + ..|
T Consensus 380 a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v 459 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 459 (780)
T ss_dssp HHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHH
Confidence 7666666654332 11133444455566788899999999999988776532 23566666666553 3 379
Q ss_pred HHHHHHHHHHHcCCCCc
Q 005098 526 AMAAVISLGLIGSGTNN 542 (714)
Q Consensus 526 r~~AiiAlGlV~aGt~n 542 (714)
+..|+.++|-+..+..+
T Consensus 460 ~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 460 TEPAICALRHLTSRHQD 476 (780)
T ss_dssp HHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHhcCch
Confidence 99999999988665433
No 28
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.63 E-value=0.0055 Score=68.89 Aligned_cols=300 Identities=10% Similarity=0.072 Sum_probs=176.7
Q ss_pred chhHHHHHHHhhhhhcccchh---------hHHhhhhhccC-CCchhHHHHHHHHHHHhcCCCCChh-----hHHHHHHH
Q 005098 231 EHGKMSAAASLGMILLWDVDS---------GLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSE 295 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~~~---------~l~~l~~yL~s-~~~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~ 295 (714)
...++.|+.++--+..-+..+ ++..|-.+|.+ +++.++.-|+.+|+-+.+|...... -++..|..
T Consensus 71 ~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~ 150 (510)
T 3ul1_B 71 LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150 (510)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Confidence 345666666655433222111 23345566654 4567888899999988776421111 14567888
Q ss_pred hccCCChHHHHHHHHHHHHHhccCCC-H------hHHHHHHhhhcCCC---ChhHHHHHHHHHHHhHhcCCCC---HHHH
Q 005098 296 YVGREDACIRIGAIMGLGISYAGTQN-D------QIRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCN---EEVA 362 (714)
Q Consensus 296 ~L~~~~~~v~~gA~lGLGl~y~Gs~~-~------~i~e~L~~~l~d~~---~~~e~~~~AalaLGLi~lGs~~---~~~~ 362 (714)
.|.+++..++..|+-+||-+...+.. + .....|...+.+++ ........++.++.-+..+... ...+
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 230 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV 230 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 89999999999999999987543321 1 13445666665332 1223344677777776655432 2333
Q ss_pred HHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH---------HHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH
Q 005098 363 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE---------ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 433 (714)
Q Consensus 363 e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~---------~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~ 433 (714)
+.++..|..--..+ .+.+...++.+++-+.-+..+..+ .+++.|... ++-.+..+..+ +....+++.
T Consensus 231 ~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~a--L~nl~~~~~ 306 (510)
T 3ul1_B 231 EQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRA--IGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHH--HHHHTTSCH
T ss_pred HhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHH--HHHhhcCCH
Confidence 44444443321222 445666666677766666555433 344545443 33333333433 444556775
Q ss_pred HHHHHHH---------hhccccCCCCccccchhHHHHHHhhcccchhhhh-----HHHHHHHHHhcCCHHHHhhHHHHHh
Q 005098 434 LKVQNLL---------GHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPLALG 499 (714)
Q Consensus 434 ~~i~~LL---------~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~-----~~~~l~~L~~~~~~~vr~g~~lALG 499 (714)
...+.++ +.+. +.+ +.+|+.++.+++-+..+++...+. +...+-.++++.++.+|..++.||+
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~-~~~--~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLT-NPK--TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTT-CSS--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHhc-CCC--HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5544443 2222 222 378999999999998877622111 2233445668889999999999999
Q ss_pred hhccCCCcH--------HHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 500 LLCISNPKV--------NVMDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 500 l~~aGt~~~--------~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
-+..+.... .+++.|..+++.+|..++..++-++.-++
T Consensus 384 Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 384 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 765543221 34667788889999999888877776554
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.59 E-value=0.011 Score=65.66 Aligned_cols=327 Identities=13% Similarity=0.027 Sum_probs=164.3
Q ss_pred hHHHHHHHhhhhhcccc--------hhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHhccC
Q 005098 233 GKMSAAASLGMILLWDV--------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-----CDPALALLSEYVGR 299 (714)
Q Consensus 233 ~~~~a~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e-----~d~~~~lL~~~L~~ 299 (714)
.+..|+.+|+-+-..+. ..++..+-+.+.+++..++..++.+|+.+..+.... ...++..|...+.+
T Consensus 117 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~ 196 (529)
T 1jdh_A 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh
Confidence 45666666665543321 234556667777777777777766776655432000 00134445555554
Q ss_pred CC-hHHHHHHHHHHHHHhccCCCH------hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC----HHHHHHHHHH
Q 005098 300 ED-ACIRIGAIMGLGISYAGTQND------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN----EEVAQAIIFA 368 (714)
Q Consensus 300 ~~-~~v~~gA~lGLGl~y~Gs~~~------~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~----~~~~e~Ll~~ 368 (714)
.+ +..+..++-.|........+. .+++.|.+.+.++ +.++...++.+|+-+.-+... ..++..+++.
T Consensus 197 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~l 274 (529)
T 1jdh_A 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 274 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHH
Confidence 33 444444544444433322211 2455666666554 345555667777765443322 3455556554
Q ss_pred HhhcCccccCchhHhHHHHHHhHhhcCChh---------hHHHHHHHHhhchh-hhhhhhHHHHHHHHhhcCCCH-----
Q 005098 369 LMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNE-KIRKYCDMTLLSCAYAGTGNV----- 433 (714)
Q Consensus 369 L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e---------~~~~ll~~L~~~~~-~~~r~~~~~~~glayaGtGn~----- 433 (714)
+. .+ +..+...++-+++-+..+..+ .++.+++.+...++ +-.+..++.+++-.-.+.++.
T Consensus 275 l~----~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 275 LG----SD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp TT----CS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred Hc----CC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 42 11 344555555566665554432 34556666654322 445555555544332222222
Q ss_pred -----HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh-----hhHHHHHHHHHhcCCHHHHhhHHHHHhh---
Q 005098 434 -----LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGL--- 500 (714)
Q Consensus 434 -----~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~-----~~~~~~l~~L~~~~~~~vr~g~~lALGl--- 500 (714)
..+..|++.+.++.+ +.+++.++-.++-+..+++... ..++.++ .++++.++.+|..++++++-
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~l~n~~~ 426 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANHAPLREQGAIPRLV-QLLVRAHQDTQRRTSMGGTQQQF 426 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCC--HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHH-HHHHHHHHHHC-----------C
T ss_pred HHHHcCChhHHHHHhccccc--hHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHH-HHHHHHhHHHHHHHhcccCchhh
Confidence 123455666654332 2688888888888887654211 1133333 44456677888877666552
Q ss_pred -------------------hccCC------CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch------HHHHHH
Q 005098 501 -------------------LCISN------PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA------RIAGML 549 (714)
Q Consensus 501 -------------------~~aGt------~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~------rv~~~l 549 (714)
++... .+..+++.|.++++|++..|+..|..+++-+....... .....|
T Consensus 427 ~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L 506 (529)
T 1jdh_A 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506 (529)
T ss_dssp BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH
Confidence 11100 01123466778889999999999988888764210010 112223
Q ss_pred HHHHhhhccChhHHHHHHHHHh
Q 005098 550 RNLSSYYYKDANLLFCVRIAQG 571 (714)
Q Consensus 550 r~l~~~~~~d~~~~~~~~lA~G 571 (714)
..|. .+.|+..+..+.-|+.
T Consensus 507 ~~l~--~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 507 TELL--HSRNEGVATYAAAVLF 526 (529)
T ss_dssp HHGG--GCSSHHHHHHHHHHHH
T ss_pred HHHh--cCCCHHHHHHHHHHHH
Confidence 3332 2567777666665553
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.57 E-value=0.0028 Score=63.32 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=63.4
Q ss_pred HHhhhhhccCCCchhHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC------
Q 005098 253 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDACIRIGAIMGLGISYAGTQN------ 321 (714)
Q Consensus 253 l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~-----d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~------ 321 (714)
+..+.+-|.++++.++.-|+.+|.-+-+...... ..++..|...+.++++.++..|+..|+-+..++..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344555667777788888877743222100000 01456778888888889999999999987665421
Q ss_pred -HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhc
Q 005098 322 -DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYV 354 (714)
Q Consensus 322 -~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~l 354 (714)
...++.|...+.++ +.+++..|+.+|+-+..
T Consensus 94 ~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 94 DAGALPALVQLLSSP--NEQILQEALWALSNIAS 125 (252)
T ss_dssp HTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhc
Confidence 12556667777664 34666688888887643
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.57 E-value=0.017 Score=68.61 Aligned_cols=332 Identities=13% Similarity=0.027 Sum_probs=180.8
Q ss_pred chhHHHHHHHhhhhhcccc--------hhhHHhhhhhccCCCchhHHHHHHHHHHHhcCC-------CCChhhHHHHHHH
Q 005098 231 EHGKMSAAASLGMILLWDV--------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGI-------RNDCDPALALLSE 295 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~-------~~e~d~~~~lL~~ 295 (714)
...+..|+.+|+-+-..+. ..++..+-+.+.+++..++.-++-+|.....+. ... ..+..|..
T Consensus 248 ~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~--~~i~~Lv~ 325 (780)
T 2z6g_A 248 DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS--GGPQALVN 325 (780)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT--THHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CCHHHHHH
Confidence 3467777777776654321 234555666676666666666666666554332 011 13455556
Q ss_pred hccCCC-hHHHHHHHHHHHHHhccCCCH-h-----HHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC----CHHHHHH
Q 005098 296 YVGRED-ACIRIGAIMGLGISYAGTQND-Q-----IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC----NEEVAQA 364 (714)
Q Consensus 296 ~L~~~~-~~v~~gA~lGLGl~y~Gs~~~-~-----i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~----~~~~~e~ 364 (714)
.+.+.+ +..+..++-.|........+. . ++..|...+.+. +.++...|+.+|+-+.-+.. ...++..
T Consensus 326 lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~ 403 (780)
T 2z6g_A 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGT 403 (780)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchhhhhhhhHHHH
Confidence 666544 344444444555443322222 2 345666666654 33444456667766544332 3455666
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHhHhhcCChh---------hHHHHHHHHhhchhh-hhhhhHHHHHHHHhhcCCCHH
Q 005098 365 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNEK-IRKYCDMTLLSCAYAGTGNVL 434 (714)
Q Consensus 365 Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e---------~~~~ll~~L~~~~~~-~~r~~~~~~~glayaGtGn~~ 434 (714)
|++.|. .. +..+.+.++.+++-+..+..+ .++.+++.|....++ -.+..++.+++-.-.+..+..
T Consensus 404 Lv~lL~----~~-d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~ 478 (780)
T 2z6g_A 404 LVQLLG----SD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478 (780)
T ss_dssp HHHHTT----CS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHH
T ss_pred HHHHHc----CC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHH
Confidence 666442 11 344666666677766665533 455666666653332 455555555554322233321
Q ss_pred ----------HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh-----hhHHHHHHHHHhcCCH-----------
Q 005098 435 ----------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQ----------- 488 (714)
Q Consensus 435 ----------~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~-----~~~~~~l~~L~~~~~~----------- 488 (714)
.+..|+..+.+..+ +.+++.++-+|+-+..+++... ..++.+++.| .+.++
T Consensus 479 ~~~~~v~~~~~l~~L~~lL~~~~~--~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~al~ 555 (780)
T 2z6g_A 479 MAQNAVRLHYGLPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGT 555 (780)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCC--HHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTC----
T ss_pred HHHHHHHHcCCHHHHHHHhcCCCh--HHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH-HhcchhHHHHHhhccc
Confidence 23456666654332 2688889999998887654210 1233334333 33333
Q ss_pred -----------HHHhhHHHHHhhhccCCC------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 005098 489 -----------NIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 551 (714)
Q Consensus 489 -----------~vr~g~~lALGl~~aGt~------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~ 551 (714)
.++..++-||+-++.... ...++..|..++++++..|+..|..+++-+.. ++.....+.+
T Consensus 556 nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~---~~~~~~~i~~ 632 (780)
T 2z6g_A 556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ---DKEAAEAIEA 632 (780)
T ss_dssp --CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred cchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 355566666666543211 12235677888999999999999999887742 2222222222
Q ss_pred ------HHhh-hccChhHHHHHHHHHhhhhcCC
Q 005098 552 ------LSSY-YYKDANLLFCVRIAQGLVHMGK 577 (714)
Q Consensus 552 ------l~~~-~~~d~~~~~~~~lA~Gll~~G~ 577 (714)
|.+. .+.|+.++..+..|++-+..-+
T Consensus 633 ~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 633 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 2222 2678888888888887766543
No 32
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.56 E-value=0.026 Score=66.68 Aligned_cols=308 Identities=13% Similarity=0.059 Sum_probs=158.6
Q ss_pred ccCCCchhHHHHHHHHHHHhc-----CCCCChhhHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCC-------CHhHH
Q 005098 260 FHSTDNHVIAGALLGVGIVNC-----GIRNDCDPALALLSEYVGRE--DACIRIGAIMGLGISYAGTQ-------NDQIR 325 (714)
Q Consensus 260 L~s~~~~~~~GAllaLGli~~-----G~~~e~d~~~~lL~~~L~~~--~~~v~~gA~lGLGl~y~Gs~-------~~~i~ 325 (714)
+.++++.+ .++...++.+.. +...+ ++..|...+.++ ++.+|.+++..|+-+.--.. -..++
T Consensus 99 l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~---ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll 174 (876)
T 1qgr_A 99 LGTETYRP-SSASQCVAGIACAEIPVNQWPE---LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEIL 174 (876)
T ss_dssp TTTCCSSS-CHHHHHHHHHHHHHGGGTCCTT---HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH
T ss_pred hCCCcHHH-HHHHHHHHHHHHhhCcccccHH---HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHH
Confidence 44444455 566555555432 23223 778888888887 88899999999987653221 12345
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhHhc--CCC--CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh----
Q 005098 326 HKLSTILNDAKSPLDVIAFSAISLGLIYV--GSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ---- 397 (714)
Q Consensus 326 e~L~~~l~d~~~~~e~~~~AalaLGLi~l--Gs~--~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~---- 397 (714)
..+...+.+++.+.+++..|.-+++.+.- +.. .....+.+++.+.+....+ ++++++.+.-.++-+.-...
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55555555543234555566667765532 211 1111123444443322111 33444444434443332111
Q ss_pred -----hhHHHHHHHHhhchhhhhhhhHHHHHHHHhh--------------c------CCC------HHHHHHHHhhcccc
Q 005098 398 -----ESVEATAEVSKTFNEKIRKYCDMTLLSCAYA--------------G------TGN------VLKVQNLLGHCAQH 446 (714)
Q Consensus 398 -----e~~~~ll~~L~~~~~~~~r~~~~~~~glaya--------------G------tGn------~~~i~~LL~~~~~~ 446 (714)
+-.+.+++.+...++.+.+.+.-+...++-. + .-+ ...+..+++.+.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 1222222222222222222111111111100 0 001 12233344444321
Q ss_pred C----CCCccccchhHHHHHHhhcccchhhhhHHHHH---HHHHhcCCHHHHhhHHHHHhhhccCCC-c------HHHHH
Q 005098 447 H----EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL---EHLLQYGEQNIRRAVPLALGLLCISNP-K------VNVMD 512 (714)
Q Consensus 447 ~----~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l---~~L~~~~~~~vr~g~~lALGl~~aGt~-~------~~ai~ 512 (714)
. +++..+|+++.-+++.+.-.-+ .+.++.++ ...+.+.++.+|.+++.++|-+..+.+ + ..++.
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 411 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 1113678888888877754432 12333333 344567889999999999999887765 2 24566
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHcCCCC-----chHHHHHHHHHHhhhccChhHHHHHHHHHhhhh
Q 005098 513 TLSRLSHDTDSEVAMAAVISLGLIGSGTN-----NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVH 574 (714)
Q Consensus 513 ~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~-----n~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~ 574 (714)
.|.+.++|++..||..|+.++|-+..... .+-+..++..+......++.++-.+.-|++-+.
T Consensus 412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67777899999999999999997765422 233445555554443334666655555555444
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.52 E-value=0.031 Score=64.50 Aligned_cols=331 Identities=13% Similarity=0.032 Sum_probs=175.5
Q ss_pred hhHHHHHHHhhhhhcccc--------hhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHhcc
Q 005098 232 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVG 298 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~-----d~~~~lL~~~L~ 298 (714)
..+..|+.+|+-+-..+. ..++..|-+.|.+++...+..++.+|+.+..+..... ..++..|...+.
T Consensus 113 ~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~ 192 (644)
T 2z6h_A 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192 (644)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHH
Confidence 456667666665543321 2345566677777776677777667776654321000 013455666666
Q ss_pred CCC-hHHHHHHHHHHHHHhccCCCH------hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC----HHHHHHHHH
Q 005098 299 RED-ACIRIGAIMGLGISYAGTQND------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN----EEVAQAIIF 367 (714)
Q Consensus 299 ~~~-~~v~~gA~lGLGl~y~Gs~~~------~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~----~~~~e~Ll~ 367 (714)
+.+ +..+..++-.|........+. .++..|.+.+.+. +.+++..++.+|+-+.-+..+ ..++..|++
T Consensus 193 ~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~ 270 (644)
T 2z6h_A 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270 (644)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH
Confidence 543 455555555555543322222 2345566666554 345555677777766544322 345555555
Q ss_pred HHhhcCccccCchhHhHHHHHHhHhhcCChh---------hHHHHHHHHhhchh-hhhhhhHHHHHHHHhhcCCCH----
Q 005098 368 ALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNE-KIRKYCDMTLLSCAYAGTGNV---- 433 (714)
Q Consensus 368 ~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e---------~~~~ll~~L~~~~~-~~~r~~~~~~~glayaGtGn~---- 433 (714)
.|. .+ +..+...++-+++-+..+..+ .++.+++.+...++ +-.+..++.+++-.-...++.
T Consensus 271 lL~----~~-d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q 345 (644)
T 2z6h_A 271 LLG----SD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345 (644)
T ss_dssp HTT----CS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHH
T ss_pred HHc----CC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 442 11 344555666566655554433 35556666655332 445555555544332222332
Q ss_pred ------HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchh-----hhhHHHHHHHHHhcCCHHHHhhHH-------
Q 005098 434 ------LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVP------- 495 (714)
Q Consensus 434 ------~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~-----~~~~~~~l~~L~~~~~~~vr~g~~------- 495 (714)
..+..|++.+.+..+ +.+++.++-+++-+..+++.. ...++.+++ ++.+.++.+|..++
T Consensus 346 ~~v~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 346 NAVRLHYGLPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHHHTTHHHHHHHTTSTTCC--HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH-HHHHHHHHHTTC---------
T ss_pred HHHHHccChHHHHHHhCccCc--hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH-HHhccchhhhhHhhhccccch
Confidence 234456666654432 268888888888888765421 112333333 34444455555444
Q ss_pred ---------------HHHhhhccCCC------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHH----
Q 005098 496 ---------------LALGLLCISNP------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLR---- 550 (714)
Q Consensus 496 ---------------lALGl~~aGt~------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr---- 550 (714)
-||+.++.... +..++..|..++++.+..|++.|.-+++-+.. ++.....+.
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~---~~~~~~~i~~~g~ 499 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ---DKEAAEAIEAEGA 499 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTC
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHcCC
Confidence 44443322111 12335667788889999999999888887653 122222221
Q ss_pred --HHHhh-hccChhHHHHHHHHHhhhhc
Q 005098 551 --NLSSY-YYKDANLLFCVRIAQGLVHM 575 (714)
Q Consensus 551 --~l~~~-~~~d~~~~~~~~lA~Gll~~ 575 (714)
.|.+. .+.|+..+..+.-|++-+--
T Consensus 500 l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 500 TAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 12222 25788888888888877643
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.50 E-value=0.042 Score=59.44 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=132.0
Q ss_pred HHHHHHHhccCC--ChHHHHHHHHHHHHHhccC---CC----HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHh--cCC-
Q 005098 289 ALALLSEYVGRE--DACIRIGAIMGLGISYAGT---QN----DQIRHKLSTILNDAKSPLDVIAFSAISLGLIY--VGS- 356 (714)
Q Consensus 289 ~~~lL~~~L~~~--~~~v~~gA~lGLGl~y~Gs---~~----~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~--lGs- 356 (714)
.+..|...+.++ ++.++.+++..|+.+.-.. .- ..++..+...+.|+..+.+++..|+-+++-+. +..
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 777788888777 7889999999998765322 11 24555566666665323455556767776542 110
Q ss_pred -CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCC--------h-hhHHHHHHHHhhchhhhhhhhHHHHHHHH
Q 005098 357 -CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK--------Q-ESVEATAEVSKTFNEKIRKYCDMTLLSCA 426 (714)
Q Consensus 357 -~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~--------~-e~~~~ll~~L~~~~~~~~r~~~~~~~gla 426 (714)
......+.+++.+.+..... ...+++.++-+++-+.-.. + +-.+.++..+...++.+...+.-+...++
T Consensus 209 ~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 209 FDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 01111122344443222111 3344444444443332111 1 23333333343333333222111111111
Q ss_pred hh--------c------------CCC------HHHHHHHHhhccccC----CCCccccchhHHHHHHhhcccch-hhhhH
Q 005098 427 YA--------G------------TGN------VLKVQNLLGHCAQHH----EKGEAYQGPAVLGIAMVAMAEEL-GLEMA 475 (714)
Q Consensus 427 ya--------G------------tGn------~~~i~~LL~~~~~~~----~~~~~vrr~avl~lalI~~~~~~-~~~~~ 475 (714)
-. . ... ...+..+++.+.+.. +++..+|+++.-+++.+.-.-+. -...+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~ 367 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV 367 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHH
Confidence 00 0 011 122333444443221 11125778888887776543320 01123
Q ss_pred HHHHHHHHhcCCHHHHhhHHHHHhhhccCCC-c------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 476 IRSLEHLLQYGEQNIRRAVPLALGLLCISNP-K------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 476 ~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~-~------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
...+...+++.++.+|.++++++|-+..|.. + ..++..|.+.++|++..||..|+.++|-+..
T Consensus 368 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3344445567889999999999999887654 2 4678888899999999999999999987764
No 35
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.50 E-value=0.018 Score=71.56 Aligned_cols=280 Identities=10% Similarity=0.078 Sum_probs=158.8
Q ss_pred hHHhhhhhccCCCchhHHHHHHHHHHHhcCCCC-ChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH--------
Q 005098 252 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN-DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-------- 322 (714)
Q Consensus 252 ~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~-e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~-------- 322 (714)
.+..+-+++.+++..+|..|+.++|-+..+... ..+.++..|.+.+.++++.+|.+|+.+||-+......+
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 344566777788899999999999988654321 11235666777777888888999999999876443322
Q ss_pred hHHHHHHhh----hcCCCChhHHHHHHHHHHHhHhc--CCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCC
Q 005098 323 QIRHKLSTI----LNDAKSPLDVIAFSAISLGLIYV--GSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK 396 (714)
Q Consensus 323 ~i~e~L~~~----l~d~~~~~e~~~~AalaLGLi~l--Gs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~ 396 (714)
...+.++|. +.|+ .+.+++..|.-+++-+.- |..=....+.+++.+...-..+ +..+++.++-+++.+.-..
T Consensus 129 ~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhc
Confidence 234444444 4432 234555567777776542 3211112244444444321111 2344445555776655443
Q ss_pred hh-----hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCC------HHHHHHHHhhccccCCCCccccchhHHHHHHhh
Q 005098 397 QE-----SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA 465 (714)
Q Consensus 397 ~e-----~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn------~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~ 465 (714)
++ ..+.+++.+...+++-.|..++-+++......|. ...+..+++.+.++ + +.+|..+.-+++.+.
T Consensus 207 ~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~-~--~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 207 GNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-D--DELREYCIQAFESFV 283 (1230)
T ss_dssp ----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-C--TTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHHH
Confidence 32 3566667666544334444445444444333343 34566677776543 3 378888888877665
Q ss_pred cccc--hhhhhHHHHHHHHHh----------------------------------------cCCHHHHhhHHHHHhhhcc
Q 005098 466 MAEE--LGLEMAIRSLEHLLQ----------------------------------------YGEQNIRRAVPLALGLLCI 503 (714)
Q Consensus 466 ~~~~--~~~~~~~~~l~~L~~----------------------------------------~~~~~vr~g~~lALGl~~a 503 (714)
-.-+ + ....+.++..+++ +....+|++++-+++.+..
T Consensus 284 ~~~~~~~-~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 284 RRCPKEV-YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp HCTTCCC-HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HHChHHH-HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 4221 1 0123333332221 1124679999999998766
Q ss_pred CCCc--H----HHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 504 SNPK--V----NVMDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 504 Gt~~--~----~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
..+. . +++..|....+|++..||..|+-+++-+.
T Consensus 363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 4453 1 22344555568999999998887776554
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.48 E-value=0.013 Score=66.12 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=163.5
Q ss_pred hhhhcc-CCCchhHHHHHHHHHHHhcCCCCChh-----hHHHHHHHhccCCChHHHHHHHHHHHHHhccCC-CHh-----
Q 005098 256 IDKYFH-STDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQ-NDQ----- 323 (714)
Q Consensus 256 l~~yL~-s~~~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~-~~~----- 323 (714)
|-.+|. ++++.++.-|+.+|+-+..|...... -++..|...+.+++..++..|+.+||-+...+. .++
T Consensus 124 Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~ 203 (529)
T 3tpo_A 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH 203 (529)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc
Confidence 445554 44567888888888888776421111 145677788889999999999999997754321 111
Q ss_pred -HHHHHHhhhcCCC---ChhHHHHHHHHHHHhHhcCCCC---HHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCC
Q 005098 324 -IRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCN---EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK 396 (714)
Q Consensus 324 -i~e~L~~~l~d~~---~~~e~~~~AalaLGLi~lGs~~---~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~ 396 (714)
++..|...+.++. ........++.+|.-+..+... ...++.+++.|..--..+ .+.+...++.+++-+.-+.
T Consensus 204 g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 204 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSC
T ss_pred CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhh
Confidence 3445666665332 1223344677777776655432 233344444443321122 4456666666777666666
Q ss_pred hhhHH---------HHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHH---------HHhhccccCCCCccccchhH
Q 005098 397 QESVE---------ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN---------LLGHCAQHHEKGEAYQGPAV 458 (714)
Q Consensus 397 ~e~~~---------~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~---------LL~~~~~~~~~~~~vrr~av 458 (714)
.+..+ .+++.|... ++-.+..+..+ +....+|+....+. |.+.+.+ .+ +.+|+.|+
T Consensus 283 ~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~a--L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~--~~i~~~a~ 356 (529)
T 3tpo_A 283 NERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRA--IGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PK--TNIQKEAT 356 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHH--HHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SS--HHHHHHHH
T ss_pred hhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHH--HHHHHccchHHHHHHhhcccHHHHHHHHcC-CC--HHHHHHHH
Confidence 55433 344555443 33333333333 33445666543332 3344432 22 37899999
Q ss_pred HHHHHhhcccchhhh-----hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH--------HHHHHHHHhhcCCchHH
Q 005098 459 LGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV--------NVMDTLSRLSHDTDSEV 525 (714)
Q Consensus 459 l~lalI~~~~~~~~~-----~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~--------~ai~~L~~l~~D~~~~V 525 (714)
.+++-+..+++...+ .+...+-.+++++++.+|..++.||+-+..+.... .++..|-.+++.+|..+
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i 436 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 436 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence 999999988762111 12233445568889999999999999766543222 24667788888999998
Q ss_pred HHHHHHHHHHHc
Q 005098 526 AMAAVISLGLIG 537 (714)
Q Consensus 526 r~~AiiAlGlV~ 537 (714)
+..++-|+.-++
T Consensus 437 ~~~~L~aL~nil 448 (529)
T 3tpo_A 437 IQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777766553
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.46 E-value=0.0032 Score=61.13 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=58.6
Q ss_pred cccchhHHHHHHhhcccchhh-----hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhhc
Q 005098 452 AYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSH 519 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~-----~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~ 519 (714)
.++..++-+++-+..+++... ..+...+-.++++.++.+|..++.+|+-++.+++.. .+++.|.++++
T Consensus 111 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh
Confidence 556666666666655443111 112333445557778999999999999888764433 36788888999
Q ss_pred CCchHHHHHHHHHHHHH
Q 005098 520 DTDSEVAMAAVISLGLI 536 (714)
Q Consensus 520 D~~~~Vr~~AiiAlGlV 536 (714)
+++..|+..|..+++-+
T Consensus 191 ~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 191 HENEKIQKEAQEALEKL 207 (210)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998888765
No 38
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.46 E-value=0.011 Score=58.45 Aligned_cols=218 Identities=20% Similarity=0.213 Sum_probs=128.6
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCH-------HHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh
Q 005098 325 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-------EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ 397 (714)
Q Consensus 325 ~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~-------~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~ 397 (714)
++.|...+.+++ .+++..|+.+|+-+..+..+. ..++.+++.|.. . +..+.+.++.+++-+..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~-~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----T-DSEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----S-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----C-CHHHHHHHHHHHHHHHcCCh
Confidence 566777776543 456667888888775444200 133444443321 1 23444555555555444333
Q ss_pred hhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhh----
Q 005098 398 ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE---- 473 (714)
Q Consensus 398 e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~---- 473 (714)
+..+.+++ . ..+..|++.+.++ + +.++..++-+++-+...++...+
T Consensus 77 ~~~~~~~~------------------------~---~~i~~l~~ll~~~-~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 126 (252)
T 4hxt_A 77 EAIKAIVD------------------------A---GGVEVLVKLLTST-D--SEVQKEAARALANIASGPDEAIKAIVD 126 (252)
T ss_dssp HHHHHHHH------------------------T---THHHHHHHHTTCS-S--HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHH------------------------C---CCHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32222111 1 1244555555432 2 37888888888888865542211
Q ss_pred -hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH-
Q 005098 474 -MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR- 544 (714)
Q Consensus 474 -~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~r- 544 (714)
.+...+-.++++.++.+|..++.+|+-++.+++.. .+++.|.+++++++..|+..|+.+++-+..+..+.+
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 206 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 13344446667889999999999999998776544 267888899999999999999999999987533211
Q ss_pred -H--HHHHHHHHhhh-ccChhHHHHHHHHHhhhhcCCCc
Q 005098 545 -I--AGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGL 579 (714)
Q Consensus 545 -v--~~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G~g~ 579 (714)
+ ...+..|.... +.|+..+-.+..+++-+.-....
T Consensus 207 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 0 01122232222 45666666776666666554433
No 39
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.45 E-value=0.0057 Score=72.58 Aligned_cols=275 Identities=11% Similarity=0.081 Sum_probs=171.1
Q ss_pred HHhhhhhccCC--CchhHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC----
Q 005098 253 LAQIDKYFHST--DNHVIAGALLGVGIVNCGIRND-----CDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN---- 321 (714)
Q Consensus 253 l~~l~~yL~s~--~~~~~~GAllaLGli~~G~~~e-----~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~---- 321 (714)
...+.++|.++ +..++.-|+.||+....+.... ...++..|.+.+.+++..++.+|+-.|+-+-.|+-.
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~ 458 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEML 458 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhh
Confidence 34566777776 7788889999888775431100 012445566677777889999999999999887620
Q ss_pred ------------------------------H-----hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCH-------
Q 005098 322 ------------------------------D-----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE------- 359 (714)
Q Consensus 322 ------------------------------~-----~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~------- 359 (714)
+ .++..|...+..+ +.+++..|+.+|+-+- |..+.
T Consensus 459 ~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~--s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~ 535 (810)
T 3now_A 459 PEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE--SHNSQELIARVLNAVC-GLKELRGKVVQE 535 (810)
T ss_dssp CSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC--CHHHHHHHHHHHHHHH-TSHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC--CHHHHHHHHHHHHHHc-CCHHHHHHHHHC
Confidence 0 1234455555543 3456668999999884 43211
Q ss_pred HHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhc-CChh----------hHHHHHHHHhhchhhhhhhhHHHHHHHHhh
Q 005098 360 EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL-GKQE----------SVEATAEVSKTFNEKIRKYCDMTLLSCAYA 428 (714)
Q Consensus 360 ~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~l-G~~e----------~~~~ll~~L~~~~~~~~r~~~~~~~glaya 428 (714)
.++..|++.|.+. .....+.++-+|+=+.. +.++ .++.+++.|....+...++-+. .++.+.
T Consensus 536 Gaip~Lv~LL~s~-----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl--~AL~NL 608 (810)
T 3now_A 536 GGVKALLRMALEG-----TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL--MALTNL 608 (810)
T ss_dssp THHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH--HHHHHH
T ss_pred CCHHHHHHHHccC-----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH--HHHHHH
Confidence 1234555554321 23455666666653333 2222 3445555554322333343333 356666
Q ss_pred cCCCHH---------HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhh-----hHHHHHHHHHhcCCHHHHhhH
Q 005098 429 GTGNVL---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAV 494 (714)
Q Consensus 429 GtGn~~---------~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~-----~~~~~l~~L~~~~~~~vr~g~ 494 (714)
.+++.. .+..|...+.+ .++ .+|+.|.-+|+-++.+++.-.. .+.+.+-.|++..+..+|..+
T Consensus 609 a~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~--~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~A 685 (810)
T 3now_A 609 ASMNESVRQRIIKEQGVSKIEYYLME-DHL--YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATAC 685 (810)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHS-CCT--THHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcC-CCH--HHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHH
Confidence 666533 23345555543 233 7999999999999887653111 123445566777889999999
Q ss_pred HHHHhhhccCCCc--------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 495 PLALGLLCISNPK--------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 495 ~lALGl~~aGt~~--------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
+.||+.+.+|++. ...+..|-+++.+++..++..|+.+++-+..++
T Consensus 686 a~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 686 AGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999987542 334557778889999999999999998887754
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.44 E-value=0.02 Score=63.46 Aligned_cols=301 Identities=12% Similarity=0.010 Sum_probs=168.6
Q ss_pred hhHHHHHHHhhhhhcccc--------hhhHHhhhhhccC-CCchhHHHHHHHHHHHhcCCCCC----hhhHHHHHHHhcc
Q 005098 232 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVG 298 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~--------~~~l~~l~~yL~s-~~~~~~~GAllaLGli~~G~~~e----~d~~~~lL~~~L~ 298 (714)
..+..|+.+|+-+-..+. .+++..+-+.|.+ ++..++..|+.+|+-+.....+. ...++..|...+.
T Consensus 32 ~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~ 111 (529)
T 1jdh_A 32 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 111 (529)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc
Confidence 345566666665433211 1244445555543 36677778888877653320000 0014567778888
Q ss_pred CCChHHHHHHHHHHHHHhccCCC-------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC-------CHHHHHH
Q 005098 299 REDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC-------NEEVAQA 364 (714)
Q Consensus 299 ~~~~~v~~gA~lGLGl~y~Gs~~-------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~-------~~~~~e~ 364 (714)
++++.++..|+-.|+-+..++.+ ..++..|...+.+++ .++...++-+|+.+-.|+. +...++.
T Consensus 112 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~ 189 (529)
T 1jdh_A 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQA 189 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 88889999999999988766432 245666777776543 3444456566665544321 1124556
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHhHhhcCCh--------hhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcC----CC
Q 005098 365 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--------ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT----GN 432 (714)
Q Consensus 365 Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~--------e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGt----Gn 432 (714)
+++.|.... .+.....++-.+.-+..... ..++.+++.+... ++-.+..++.+++-.--+. +.
T Consensus 190 L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 264 (529)
T 1jdh_A 190 LVNIMRTYT----YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQEGM 264 (529)
T ss_dssp HHHHHHHCC----CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTTCSCC
T ss_pred HHHHHHhCC----hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCChhhHHH
Confidence 666553221 12222222222222222211 1233334434333 3333333333332211111 12
Q ss_pred HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh------hhHHHHHHHHHhcC-CHHHHhhHHHHHhhhccCC
Q 005098 433 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQYG-EQNIRRAVPLALGLLCISN 505 (714)
Q Consensus 433 ~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~------~~~~~~l~~L~~~~-~~~vr~g~~lALGl~~aGt 505 (714)
...+..|++.+.+. + +.++..+.-+++-+..+++... .-++.+++.|.+.. ++.+|..++.+|+-+..++
T Consensus 265 ~~~i~~L~~ll~~~-~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 265 EGLLGTLVQLLGSD-D--INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341 (529)
T ss_dssp HHHHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred HhHHHHHHHHHcCC-C--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC
Confidence 35666777776432 2 3788889999999887654111 22455555555433 4899999999999987766
Q ss_pred CcH----------HHHHHHHHhhcCCc-hHHHHHHHHHHHHHcCCCCc
Q 005098 506 PKV----------NVMDTLSRLSHDTD-SEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 506 ~~~----------~ai~~L~~l~~D~~-~~Vr~~AiiAlGlV~aGt~n 542 (714)
+.. .+++.|.+++++++ ..++..|+-+++-+..+..+
T Consensus 342 ~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred chHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 553 34567778888776 58999999999999876543
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.38 E-value=0.076 Score=61.17 Aligned_cols=301 Identities=13% Similarity=0.042 Sum_probs=171.2
Q ss_pred hhHHHHHHHhhhhhcccc--------hhhHHhhhhhccCC-CchhHHHHHHHHHHHhcCCCCC----hhhHHHHHHHhcc
Q 005098 232 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVG 298 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~--------~~~l~~l~~yL~s~-~~~~~~GAllaLGli~~G~~~e----~d~~~~lL~~~L~ 298 (714)
..+..|+.+|+-+-..+. ..++..+-+.|.++ +..++..|+.+|..+.....+. ...++..|...+.
T Consensus 29 ~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 108 (644)
T 2z6h_A 29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 108 (644)
T ss_dssp HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh
Confidence 356666666765544321 12344455555543 6677777777777543210000 0025567778888
Q ss_pred CCChHHHHHHHHHHHHHhccCCC-------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCC-------HHHHHH
Q 005098 299 REDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-------EEVAQA 364 (714)
Q Consensus 299 ~~~~~v~~gA~lGLGl~y~Gs~~-------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~-------~~~~e~ 364 (714)
++++.++..|+..|+-+..+..+ ..++..|...+.+.+ .++...++-+|+.+..|... ...++.
T Consensus 109 ~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~ 186 (644)
T 2z6h_A 109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQA 186 (644)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHH
Confidence 88899999999999988766432 235666777776543 34444555567665544311 123556
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHhHhhcCChh--------hHHHHHHHHhhchhhhhhhhHHHHH-HHHhhcC---CC
Q 005098 365 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLL-SCAYAGT---GN 432 (714)
Q Consensus 365 Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e--------~~~~ll~~L~~~~~~~~r~~~~~~~-glayaGt---Gn 432 (714)
|++.|... + .+.....++-++.-+....+. .++.+++.+...+..+.+. ++.++ .++.... +.
T Consensus 187 Lv~lL~~~--~--~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~-a~~~L~nL~~~~~~~~~~ 261 (644)
T 2z6h_A 187 LVNIMRTY--T--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGM 261 (644)
T ss_dssp HHHHHTTC--C--CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHH-HHHHHHHHGGGCTTCCSC
T ss_pred HHHHHHcC--C--hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHH-HHHHHHHHhhcchhhhhh
Confidence 66655321 1 233333333333333322211 2333333333332333333 33333 2222111 11
Q ss_pred HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh------hhHHHHHHHHHhcCC-HHHHhhHHHHHhhhccCC
Q 005098 433 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQYGE-QNIRRAVPLALGLLCISN 505 (714)
Q Consensus 433 ~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~------~~~~~~l~~L~~~~~-~~vr~g~~lALGl~~aGt 505 (714)
...+..|++.+.+. + +.++..+.-+++-+..+.+... .-++.++..|.+..+ +.+|..++.+|+-+...+
T Consensus 262 ~~~i~~Lv~lL~~~-d--~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~ 338 (644)
T 2z6h_A 262 EGLLGTLVQLLGSD-D--INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338 (644)
T ss_dssp HHHHHHHHHHTTCS-C--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred hhHHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence 35666777776533 2 3788889989988887654211 124555555555444 899999999999997765
Q ss_pred CcH----------HHHHHHHHhhcCCc-hHHHHHHHHHHHHHcCCCCc
Q 005098 506 PKV----------NVMDTLSRLSHDTD-SEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 506 ~~~----------~ai~~L~~l~~D~~-~~Vr~~AiiAlGlV~aGt~n 542 (714)
+.. .++..|.+++++++ ..|+..|+.+++-+..+..+
T Consensus 339 ~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp TTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred chHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 532 35677778887765 68999999999998876544
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.33 E-value=0.021 Score=67.80 Aligned_cols=341 Identities=14% Similarity=0.073 Sum_probs=197.2
Q ss_pred ccccccchhHHHHHHHhhhhhcccchhhHH---------hhhhhccCCCchhHHHHHHHHHHHhcCCCCChh----hHHH
Q 005098 225 WLFKNKEHGKMSAAASLGMILLWDVDSGLA---------QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD----PALA 291 (714)
Q Consensus 225 wl~k~~~~~~~~a~aslGlI~~~~~~~~l~---------~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d----~~~~ 291 (714)
|+.+.....+..|+.++..|..|..+.+-. .+-+.+.+++...+--|+.++|.+..+. ...+ .-..
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~-~~R~~I~~~gv~ 333 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQGVD 333 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH-HHHHTTHHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc-HHHHHHHHcCcH
Confidence 777777778888888888888887665443 3345556888888999999999975431 1111 1125
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhc-cCCC-----------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC--
Q 005098 292 LLSEYVGREDACIRIGAIMGLGISYA-GTQN-----------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC-- 357 (714)
Q Consensus 292 lL~~~L~~~~~~v~~gA~lGLGl~y~-Gs~~-----------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~-- 357 (714)
.|...+.+++..+|.-|+.+|.-... ++.+ +++++.|...|.++..+.++...|+-||.-+-.+..
T Consensus 334 ~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk 413 (810)
T 3now_A 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413 (810)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 66677777778889888888877542 2211 234555666665542233455577777775544332
Q ss_pred -----CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh----------------------------------
Q 005098 358 -----NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------------------------------- 398 (714)
Q Consensus 358 -----~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e---------------------------------- 398 (714)
+..++..|++.|.. . +..+...+.-.++=+.-|.++
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s----~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 414 EKLIEDKASIHALMDLARG----G-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHT----T-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHhCC----C-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 12334455555432 1 233445555566655555410
Q ss_pred -------hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH-------HHHHHHHhhccccCCCCccccchhHHHHHHh
Q 005098 399 -------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV-------LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV 464 (714)
Q Consensus 399 -------~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~-------~~i~~LL~~~~~~~~~~~~vrr~avl~lalI 464 (714)
.++.+++.|. .+++-.+..++.+++-. +|..+. .++..|++.+.+... ..|+.|+-+|+-+
T Consensus 489 ~~VveaGaVp~LV~LL~-s~s~~vqe~Aa~aL~NL-A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~---~~k~~Aa~AL~nL 563 (810)
T 3now_A 489 TVLANEGITTALCALAK-TESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTE---KGKRHATQALARI 563 (810)
T ss_dssp HHHHHTTHHHHHHHHHT-CCCHHHHHHHHHHHHHH-HTSHHHHHHHHHTTHHHHHHHHHHSSCH---HHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHc-CCCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHccCCH---HHHHHHHHHHHHH
Confidence 1222333333 34566666666665433 333221 123446666654322 6788888888876
Q ss_pred hcc-cch----h---hhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhhcCCchHHHHHH
Q 005098 465 AMA-EEL----G---LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAA 529 (714)
Q Consensus 465 ~~~-~~~----~---~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~D~~~~Vr~~A 529 (714)
..+ +|- + .+.++.++..|.+..+...+.-++.||.-+..++... .+++.|..++.+.+..|++.|
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 654 331 0 1224444443322334455667888888776654321 246678888888888999999
Q ss_pred HHHHHHHcCCCCch-HHH---HHHHHHHhhh-ccChhHHHHHHHHHhhhhcC
Q 005098 530 VISLGLIGSGTNNA-RIA---GMLRNLSSYY-YKDANLLFCVRIAQGLVHMG 576 (714)
Q Consensus 530 iiAlGlV~aGt~n~-rv~---~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G 576 (714)
.-+++-+..+...- ++. ..++.|-.+. +.|...+-.+.-|++-+..|
T Consensus 644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 99999887753220 110 1122222222 35677777788888887776
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.29 E-value=0.0034 Score=60.98 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=90.4
Q ss_pred HHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhh-----HHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH--
Q 005098 436 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-- 508 (714)
Q Consensus 436 i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~-----~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-- 508 (714)
+..|++.+.+. + +.++..|+.+++-+..+++...+. +...+-.++++.++.+|..++.+|+-++.+++..
T Consensus 56 i~~L~~lL~~~-~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (210)
T 4db6_A 56 LPALVQLLSSP-N--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (210)
T ss_dssp HHHHHHHTTCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCC-C--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45566666543 2 278888888999888766522111 2234445667889999999999999998776543
Q ss_pred -----HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH-------HHHHHHHHHhhhccChhHHHHHHHHHhhh
Q 005098 509 -----NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR-------IAGMLRNLSSYYYKDANLLFCVRIAQGLV 573 (714)
Q Consensus 509 -----~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~r-------v~~~lr~l~~~~~~d~~~~~~~~lA~Gll 573 (714)
.++..|.+++++++..|+..|+.+++-+..+..+.+ +...|.++.+ +.++..+-.+..|++-+
T Consensus 133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 357788888999999999999999999887643221 2223333222 46777777777776644
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.18 E-value=0.18 Score=59.33 Aligned_cols=127 Identities=9% Similarity=-0.003 Sum_probs=76.9
Q ss_pred cch-hHHHHHHHhhhhhcccc--------hhhHHhhhhhccCCCchhHHHHHHHHHHHhcCC------CCChhhHHHHHH
Q 005098 230 KEH-GKMSAAASLGMILLWDV--------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGI------RNDCDPALALLS 294 (714)
Q Consensus 230 ~~~-~~~~a~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~------~~e~d~~~~lL~ 294 (714)
.+| .|-.|+.++|.+-.+-. +..+..+.+.+.++++.+|..++.++|-+.... ....++++..|.
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~ 460 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL 460 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 345 46777888888775532 122333445555778889999999998765321 122345677777
Q ss_pred HhccCCChHHHHHHHHHHHHHhccCC----------CHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC
Q 005098 295 EYVGREDACIRIGAIMGLGISYAGTQ----------NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC 357 (714)
Q Consensus 295 ~~L~~~~~~v~~gA~lGLGl~y~Gs~----------~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~ 357 (714)
..+.++ +.++..|+.+|+-...+.. -+++++.|.+.+.+.+.+..++..+.-++|.+.-..+
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 777765 7888889888886554322 1245555666665333223444566777776654443
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.18 E-value=0.011 Score=59.06 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=81.2
Q ss_pred HHHHHhhccccCCCCccccchhHHHHHHhhcccchh-h----hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc---
Q 005098 436 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-L----EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK--- 507 (714)
Q Consensus 436 i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~-~----~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~--- 507 (714)
+..|++.+.++ + +.++..++-+++-+..+++.. . ..+...+-.++++.++.+|..++.+|+-++.+++.
T Consensus 98 i~~L~~lL~~~-~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 98 LPALVQLLSSP-N--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp HHHHHHGGGCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCC-C--HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 44555555442 2 267777777777777666522 0 11233344556777889999999999988776533
Q ss_pred ----HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH--HH--HHHHHHHhhh-ccChhHHHHHHHHHhh
Q 005098 508 ----VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR--IA--GMLRNLSSYY-YKDANLLFCVRIAQGL 572 (714)
Q Consensus 508 ----~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~r--v~--~~lr~l~~~~-~~d~~~~~~~~lA~Gl 572 (714)
..++..|..++++++..|+..|+-+++-+..+..+.+ +. ..+..|.... +.++..+-.+..+++-
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2346677888888888999999999998876543211 00 1122232222 3456666555555543
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.15 E-value=0.12 Score=60.67 Aligned_cols=315 Identities=11% Similarity=0.052 Sum_probs=162.9
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCC--CChhhHHHHHHHhccCC-ChHHHHHHHHHHHHHhccCCC---------HhHH
Q 005098 258 KYFHSTDNHVIAGALLGVGIVNCGIR--NDCDPALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN---------DQIR 325 (714)
Q Consensus 258 ~yL~s~~~~~~~GAllaLGli~~G~~--~e~d~~~~lL~~~L~~~-~~~v~~gA~lGLGl~y~Gs~~---------~~i~ 325 (714)
+.+.++++.+|..+..+++.+..... +.-...+..|...+.++ ++.++.+++..|+.+.-.... ..++
T Consensus 102 ~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 34556778888888888887643211 11123777888888877 888999999988887643211 1344
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhH--hcCCC--CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh---
Q 005098 326 HKLSTILNDAKSPLDVIAFSAISLGLI--YVGSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--- 398 (714)
Q Consensus 326 e~L~~~l~d~~~~~e~~~~AalaLGLi--~lGs~--~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e--- 398 (714)
..+...+.|+..+.+++..|.-+++-+ +++.. .....+.+++.+.+....+ ..++++.+.-.++-+.-...+
T Consensus 182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556533455665666677654 22210 1111133444443221111 334444444444433321111
Q ss_pred -hHH-HHHH----HHhhchhhhhhhhHHHH-HHHHhhc----------------CCC------HHHHHHHHhhccccCC-
Q 005098 399 -SVE-ATAE----VSKTFNEKIRKYCDMTL-LSCAYAG----------------TGN------VLKVQNLLGHCAQHHE- 448 (714)
Q Consensus 399 -~~~-~ll~----~L~~~~~~~~r~~~~~~-~glayaG----------------tGn------~~~i~~LL~~~~~~~~- 448 (714)
... .+++ .+.. .++-.|..+.-. ..++-.. ..+ ...+..|+....+..+
T Consensus 261 ~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d 339 (861)
T 2bpt_A 261 PYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339 (861)
T ss_dssp HHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 112 2222 2222 233333322211 1111100 011 1233445544443211
Q ss_pred ---CCccccchhHHHHHHhhcccchhhhhHH---HHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-------HHHHHHHH
Q 005098 449 ---KGEAYQGPAVLGIAMVAMAEELGLEMAI---RSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLS 515 (714)
Q Consensus 449 ---~~~~vrr~avl~lalI~~~~~~~~~~~~---~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-------~~ai~~L~ 515 (714)
++..+|+.+.-.++-+...-+ ....+ ..+...+++.++.+|.+++.++|-+.-|.+. ..++..|.
T Consensus 340 ~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 340 PEDDDWNVSMSAGACLQLFAQNCG--NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417 (861)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHcc--HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 112466676666665543221 12233 3344445677899999999999998866541 23556677
Q ss_pred HhhcCCchHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHhhhccChhHHHHHHHHHhhhhcC
Q 005098 516 RLSHDTDSEVAMAAVISLGLIGSGT-----NNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 576 (714)
Q Consensus 516 ~l~~D~~~~Vr~~AiiAlGlV~aGt-----~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G 576 (714)
+.+.|++..||..|+.++|-+.... +..-+..++..+.+..+.++.++..+..|++-+.-+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Confidence 7789999999999988888665321 122233444444444333466776666666654433
No 47
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.11 E-value=0.00093 Score=60.77 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=66.4
Q ss_pred HHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHH
Q 005098 436 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS 515 (714)
Q Consensus 436 i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~ 515 (714)
+..|+..+.+ .+ +.+|..++.++|-+. ++ +.++. +..++++.++.||..++.|||-+ ++.++++.|.
T Consensus 44 ~~~L~~~L~d-~~--~~vR~~A~~aL~~~~--~~---~a~~~-L~~~L~d~~~~VR~~A~~aL~~~----~~~~a~~~L~ 110 (131)
T 1te4_A 44 FEPLLESLSN-ED--WRIRGAAAWIIGNFQ--DE---RAVEP-LIKLLEDDSGFVRSGAARSLEQI----GGERVRAAME 110 (131)
T ss_dssp HHHHHHGGGC-SC--HHHHHHHHHHHGGGC--SH---HHHHH-HHHHHHHCCTHHHHHHHHHHHHH----CSHHHHHHHH
T ss_pred HHHHHHHHcC-CC--HHHHHHHHHHHHhcC--CH---HHHHH-HHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHH
Confidence 4566666553 23 378888888888764 33 33444 44455788999999999999988 5788999999
Q ss_pred HhhcCCchHHHHHHHHHHHH
Q 005098 516 RLSHDTDSEVAMAAVISLGL 535 (714)
Q Consensus 516 ~l~~D~~~~Vr~~AiiAlGl 535 (714)
++++|++..||..|+-|++-
T Consensus 111 ~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 111 KLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHTTSCCTHHHHHHHHHGGG
T ss_pred HHHhCCCHHHHHHHHHHHHh
Confidence 99999999999999988864
No 48
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.07 E-value=0.024 Score=70.42 Aligned_cols=240 Identities=11% Similarity=0.061 Sum_probs=131.0
Q ss_pred ccCCCchhHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC---HhHHHHHHhh
Q 005098 260 FHSTDNHVIAGALLGVGIVNCGIRND-----CDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN---DQIRHKLSTI 331 (714)
Q Consensus 260 L~s~~~~~~~GAllaLGli~~G~~~e-----~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~---~~i~e~L~~~ 331 (714)
+.+.++.+|.-|+..|.-........ .+.++..|.+.+.+++..+|..|+..||-+.-+... +.+.+.|.+.
T Consensus 15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~ 94 (1230)
T 1u6g_C 15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN 94 (1230)
T ss_dssp TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677777777776665433221000 113555666777777777888888888776554432 1344444444
Q ss_pred hcCCCChhHHHHHHHHHHHhHhcCCCCHH--------HHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHH
Q 005098 332 LNDAKSPLDVIAFSAISLGLIYVGSCNEE--------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEAT 403 (714)
Q Consensus 332 l~d~~~~~e~~~~AalaLGLi~lGs~~~~--------~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~l 403 (714)
+.|++. +++.+|+.+||-+.-.-+... ..+.++..|.+.
T Consensus 95 l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~------------------------------- 141 (1230)
T 1u6g_C 95 MLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA------------------------------- 141 (1230)
T ss_dssp TTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH-------------------------------
T ss_pred hcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH-------------------------------
Confidence 445432 445577777776654433331 233444443322
Q ss_pred HHHHhhchhhhhhhhHHHHHHHH--hhcCC----CHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccc--hhhhhH
Q 005098 404 AEVSKTFNEKIRKYCDMTLLSCA--YAGTG----NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE--LGLEMA 475 (714)
Q Consensus 404 l~~L~~~~~~~~r~~~~~~~gla--yaGtG----n~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~--~~~~~~ 475 (714)
+...+++-.|.++..+++-. ..|.. -...+..+++.+.+ .+ ..+|..++-+++.+...-+ .-...+
T Consensus 142 ---l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~--~~vR~~a~~al~~l~~~~~~~~~~~~l 215 (1230)
T 1u6g_C 142 ---IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS-PR--LAVRKRTIIALGHLVMSCGNIVFVDLI 215 (1230)
T ss_dssp ---HSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC-SS--HHHHHHHHHHHHHHTTTC----CTTHH
T ss_pred ---HcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC-Cc--HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 11111122222222111111 01110 02345566666543 22 2788888888887765432 101224
Q ss_pred HHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 476 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 476 ~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
+.++..|.+..++.+|.+++-++|.+....|. .+++..+...++|.++.||..|+-+++.+..
T Consensus 216 ~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 216 EHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 55555555544467888888888877654332 5677888888889899999998888887754
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.35 E-value=0.18 Score=58.17 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHH----HHHHhhc-CCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 005098 474 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD----TLSRLSH-DTDSEVAMAAVISLGLIGSGTNNARIAGM 548 (714)
Q Consensus 474 ~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~----~L~~l~~-D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~ 548 (714)
.+...+..++.+.++++|+.+.-+|..+....|+..++. .+...++ |+|..||+.|+--+--+. +...+..+
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~I 405 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQI 405 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHH
Confidence 455556666677788999988888888876666544443 2233345 888888876664443332 22335566
Q ss_pred HHHHHhhhc-cChhHHHHHHHHHhhh
Q 005098 549 LRNLSSYYY-KDANLLFCVRIAQGLV 573 (714)
Q Consensus 549 lr~l~~~~~-~d~~~~~~~~lA~Gll 573 (714)
+++|..|.. .|+..+-.+.-++|.+
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666653 3555444444455554
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.30 E-value=0.56 Score=55.14 Aligned_cols=299 Identities=14% Similarity=0.044 Sum_probs=151.5
Q ss_pred HHHHHHHhhhhhccc----chhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCC-h----hhHHHHHHHhccCCChHH
Q 005098 234 KMSAAASLGMILLWD----VDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-C----DPALALLSEYVGREDACI 304 (714)
Q Consensus 234 ~~~a~aslGlI~~~~----~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e-~----d~~~~lL~~~L~~~~~~v 304 (714)
+..|..+++.+-... ....+..+...+.+.+..+|.+|+.++|.+..+...+ . ..++..|...+.+++..+
T Consensus 345 r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v 424 (876)
T 1qgr_A 345 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 445555555443221 1223334455666778889999999999987765311 1 124555666778888999
Q ss_pred HHHHHHHHHHHhccCCC--------HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC-------------------
Q 005098 305 RIGAIMGLGISYAGTQN--------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC------------------- 357 (714)
Q Consensus 305 ~~gA~lGLGl~y~Gs~~--------~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~------------------- 357 (714)
|..|+.+||-....... +.+++.|...+.|+ ..++..|+.+++.+.-..+
T Consensus 425 r~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~ 501 (876)
T 1qgr_A 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501 (876)
T ss_dssp HHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred HHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH
Confidence 99999999976544221 24455555555553 3455567777776542211
Q ss_pred -CHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh--------hHHHHHHHHhh----------chh----hh
Q 005098 358 -NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKT----------FNE----KI 414 (714)
Q Consensus 358 -~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e--------~~~~ll~~L~~----------~~~----~~ 414 (714)
-++++..+++.+.+ .+.+ ....+..+.-+++.+.-..++ ..+.+++.+.. .++ +-
T Consensus 502 ~~~~il~~L~~~l~~-~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 502 SFELIVQKLLETTDR-PDGH-QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp THHHHHHHHHHHTTS-CSSC-STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-cCcc-hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 12333444443321 1111 112222222244433322211 12222333322 111 11
Q ss_pred hhhhHHHHHHHHhhcCC-C------HHHHHHHHhhccccCCCCccccchhHHHHHHhhcc--cchh--hhhHHHHHHHHH
Q 005098 415 RKYCDMTLLSCAYAGTG-N------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA--EELG--LEMAIRSLEHLL 483 (714)
Q Consensus 415 ~r~~~~~~~glayaGtG-n------~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~--~~~~--~~~~~~~l~~L~ 483 (714)
.+...+.+++-...+.| . ...+..++..+...... ..++..+..+++.+... +... .+.+...+...+
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 658 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22222223332323344 2 23445556655443210 14666666666665532 2111 022333333444
Q ss_pred hcC-CHHHHhhHHHHHhhhccCCCc------HHHHHHHHHhhcC--CchHHHHHHHHHHHHHcC
Q 005098 484 QYG-EQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHD--TDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 484 ~~~-~~~vr~g~~lALGl~~aGt~~------~~ai~~L~~l~~D--~~~~Vr~~AiiAlGlV~a 538 (714)
++. ++.||..+.-++|-+...-+. .+++..|...+++ .+..+|..++.++|-+..
T Consensus 659 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 659 KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 555 899999999888877643322 3555555555554 466799999988887754
No 51
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.21 E-value=0.7 Score=50.85 Aligned_cols=279 Identities=11% Similarity=0.017 Sum_probs=141.8
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhcCCCCChh------hHHHHHHHhccCCChHHHHHHHHHHHHHhccCC-CH-hH--
Q 005098 255 QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD------PALALLSEYVGREDACIRIGAIMGLGISYAGTQ-ND-QI-- 324 (714)
Q Consensus 255 ~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d------~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~-~~-~i-- 324 (714)
.+-.+|.++++.++..|+.+|+-+..+.. +.. -++..|...|.++++.++..|+-+|.-+..++. +. .+
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34456667777788888888887654321 111 134667778888888999999999998877622 22 12
Q ss_pred ---HHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHH-----HHHHHHHHHhh------cCcc-c----cCchhHhHH
Q 005098 325 ---RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE-----VAQAIIFALMD------RSES-E----LGEPLTRLI 385 (714)
Q Consensus 325 ---~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~-----~~e~Ll~~L~~------~~~~-~----l~~~~~r~a 385 (714)
+..|...|.++ .+.+++..|+.+|+-+-.+..+.+ ++..|++.|.. ..+. + ....+.+-+
T Consensus 85 ~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 85 QNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp TTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred cCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 44566667622 234566678888888876655443 33445554421 0010 0 123344555
Q ss_pred HHHHhHhhcCChh----------hHHHHHHHHhh------chhhhhhhhHHHHHHHHhh-----cCCCHHHHHHHHhhcc
Q 005098 386 PLGLGLLYLGKQE----------SVEATAEVSKT------FNEKIRKYCDMTLLSCAYA-----GTGNVLKVQNLLGHCA 444 (714)
Q Consensus 386 ~l~lgLi~lG~~e----------~~~~ll~~L~~------~~~~~~r~~~~~~~glaya-----GtGn~~~i~~LL~~~~ 444 (714)
+-+|.=+.-+ ++ .++.+++.+.. .++.....+......+.|. .+|.. .+.+...
T Consensus 164 ~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~----~~~~~~~ 238 (457)
T 1xm9_A 164 TGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR----QLEYNAR 238 (457)
T ss_dssp HHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH----HHHHTC-
T ss_pred HHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhh----hcccccc
Confidence 5455444433 22 22223333321 0111111221222222221 00000 0000000
Q ss_pred ccCCCCccccchhHH-------HHHHhh---cccchh------hhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH
Q 005098 445 QHHEKGEAYQGPAVL-------GIAMVA---MAEELG------LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV 508 (714)
Q Consensus 445 ~~~~~~~~vrr~avl-------~lalI~---~~~~~~------~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~ 508 (714)
......+........ +..+-. ..++.| ...++.++..|.+..++.++..++.||+-+++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 000000000000000 000000 000101 1334555666666778999999999999999998652
Q ss_pred ------------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 509 ------------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 509 ------------~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
.++..|.+++++++..|+..|.-++.-+..+.
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 23457888899999999999999999886643
No 52
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.13 E-value=1.5 Score=50.14 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=64.6
Q ss_pred HHHHHhhhhhcc------cchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChh-----hHHHHHHHhccCCChHH
Q 005098 236 SAAASLGMILLW------DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACI 304 (714)
Q Consensus 236 ~a~aslGlI~~~------~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~~v 304 (714)
++.++|.-++.. .-++++..+-..|.+.++..+.-|..+|..+..+....-. -++..|...|.+++..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~v 106 (584)
T 3l6x_A 27 GSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106 (584)
T ss_dssp -------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred chHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHH
Confidence 566677766542 1234566677778888888888888888777654211000 14567788888999999
Q ss_pred HHHHHHHHHHHhccC--CCHh------HHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 005098 305 RIGAIMGLGISYAGT--QNDQ------IRHKLSTILNDAKSPLDVIAFSAISLGLI 352 (714)
Q Consensus 305 ~~gA~lGLGl~y~Gs--~~~~------i~e~L~~~l~d~~~~~e~~~~AalaLGLi 352 (714)
+..|+-+|+-+..+. .+.. .+..|...|.+.. +.+++..|+-+|--+
T Consensus 107 q~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNL 161 (584)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 999999999987763 2221 3455666665321 233333455454443
No 53
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.19 Score=50.87 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=50.6
Q ss_pred HhcCCHHHHhhHHHHHhhhccCCC----------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 005098 483 LQYGEQNIRRAVPLALGLLCISNP----------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNL 552 (714)
Q Consensus 483 ~~~~~~~vr~g~~lALGl~~aGt~----------~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l 552 (714)
+++.+|.+|.++.-.|+-....++ .+.++..|.++++|++..||..|+-++|.++.--++..+..++..|
T Consensus 155 l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 155 MKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 355678888888877776664444 2567888899999999999999999999987433344455555554
No 54
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.97 E-value=0.84 Score=52.11 Aligned_cols=267 Identities=16% Similarity=0.075 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcC---CCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC--Hh-----HHHHHHhhhcCCCChh
Q 005098 270 GALLGVGIVNCG---IRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQ-----IRHKLSTILNDAKSPL 339 (714)
Q Consensus 270 GAllaLGli~~G---~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--~~-----i~e~L~~~l~d~~~~~ 339 (714)
|++..|.-+..+ -..-.++.+..|...|.++++.++..|+..|..+..++.. .. .+..|...|.++ +.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~--~~ 104 (584)
T 3l6x_A 27 GSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP--KK 104 (584)
T ss_dssp -------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS--SH
T ss_pred chHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC--CH
Confidence 666666555442 1111234677788889988889999888888877655421 12 344566666543 45
Q ss_pred HHHHHHHHHHHhHhcCCC--CHH------HHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCCh-------hhHHHHH
Q 005098 340 DVIAFSAISLGLIYVGSC--NEE------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-------ESVEATA 404 (714)
Q Consensus 340 e~~~~AalaLGLi~lGs~--~~~------~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~-------e~~~~ll 404 (714)
+++..|+-+|+-+-.|+. +.. .+..|+..|.... .....+.++-+|.-+..... +.++.++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~----~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv 180 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR----DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALT 180 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC----SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHH
Confidence 677789999998876632 221 3556666654321 12233333323322211111 1233334
Q ss_pred HHHh-----------------hchhhhhhhhHHHHHHHHhhcCCCHH----------HHHHHHhhcccc---CCCCcccc
Q 005098 405 EVSK-----------------TFNEKIRKYCDMTLLSCAYAGTGNVL----------KVQNLLGHCAQH---HEKGEAYQ 454 (714)
Q Consensus 405 ~~L~-----------------~~~~~~~r~~~~~~~glayaGtGn~~----------~i~~LL~~~~~~---~~~~~~vr 454 (714)
+.+. ..+++-.+..++.+ |.-..+.+.. .+..|++++.+. ...++..+
T Consensus 181 ~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~--L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ 258 (584)
T 3l6x_A 181 DEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC--LRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258 (584)
T ss_dssp HHTHHHHHCCC----------CCCCHHHHHHHHHH--HHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHH
T ss_pred HHHhcccccccccccccccccccccHHHHHHHHHH--HHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHH
Confidence 3321 01112222222221 1122222211 133455665432 11101344
Q ss_pred chhHHHHHHhhcc-------------------------cchhhh-----hHHHHHHHHH-hcCCHHHHhhHHHHHhhhcc
Q 005098 455 GPAVLGIAMVAMA-------------------------EELGLE-----MAIRSLEHLL-QYGEQNIRRAVPLALGLLCI 503 (714)
Q Consensus 455 r~avl~lalI~~~-------------------------~~~~~~-----~~~~~l~~L~-~~~~~~vr~g~~lALGl~~a 503 (714)
..|+-+|.-+.++ ++-|.+ .+.+.+-.++ ...++.++..++.||.-+++
T Consensus 259 enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a 338 (584)
T 3l6x_A 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA 338 (584)
T ss_dssp HHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 4455555444433 111211 1223333344 45689999999999999999
Q ss_pred CCCc-----------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH
Q 005098 504 SNPK-----------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR 544 (714)
Q Consensus 504 Gt~~-----------~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~r 544 (714)
|++. ..++..|.++++.++..|+..|+-|++-+..+..|-.
T Consensus 339 g~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~ 390 (584)
T 3l6x_A 339 GRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE 390 (584)
T ss_dssp SCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH
Confidence 8732 3456778889999999999999999999988877643
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.85 E-value=0.78 Score=49.22 Aligned_cols=235 Identities=8% Similarity=-0.046 Sum_probs=128.3
Q ss_pred ccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcC--------------CCCHHHH
Q 005098 297 VGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVG--------------SCNEEVA 362 (714)
Q Consensus 297 L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lG--------------s~~~~~~ 362 (714)
+.+++..+|..|---|.-.. .+..++....|...+.+++...+++.+|+..|.-..-. .-+++.-
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~-~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAA-VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANAR 88 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHH
Confidence 34556666766666665522 22234566666666665434556666777777765311 1233333
Q ss_pred HHHHHHHhhcCccccCchhHhHHHHHHhHhhc------CChhhHHHHHHHHhhch-hhhhhhhHHHHHHHHhhcC-CC--
Q 005098 363 QAIIFALMDRSESELGEPLTRLIPLGLGLLYL------GKQESVEATAEVSKTFN-EKIRKYCDMTLLSCAYAGT-GN-- 432 (714)
Q Consensus 363 e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~l------G~~e~~~~ll~~L~~~~-~~~~r~~~~~~~glayaGt-Gn-- 432 (714)
+.+.+.+.+.-..+ ...+ +.++-+++-+.- .-++..+.+++.+.... ++..|.++..+++-..-.. ++
T Consensus 89 ~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 89 REVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 44444333321111 2234 444444433321 12345566666665432 6677877776665432211 11
Q ss_pred ----HHHHHHHHhhccccC-CCCccccchhHHHHHHhhc--ccchh----hhhHHHHHHHHHhcCCHHHHhhHHHHHhhh
Q 005098 433 ----VLKVQNLLGHCAQHH-EKGEAYQGPAVLGIAMVAM--AEELG----LEMAIRSLEHLLQYGEQNIRRAVPLALGLL 501 (714)
Q Consensus 433 ----~~~i~~LL~~~~~~~-~~~~~vrr~avl~lalI~~--~~~~~----~~~~~~~l~~L~~~~~~~vr~g~~lALGl~ 501 (714)
...+..+++.+.+.. + ..+|..++-+++-+.. .+... .+.+.+.+..+..+.++.+|..++-+++.+
T Consensus 167 ~~~~~~ll~~l~~~l~~~~~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 167 QDKSNEILTAIIQGMRKEEPS--NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGGHHHHHHHHHHHHSTTCCC--HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 234455666665432 2 3788888777765321 11100 012344455556778899999999998876
Q ss_pred ccCCCc------H-HHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 005098 502 CISNPK------V-NVMDTLSRLSHDTDSEVAMAAVISLGLI 536 (714)
Q Consensus 502 ~aGt~~------~-~ai~~L~~l~~D~~~~Vr~~AiiAlGlV 536 (714)
.-..+. . .++..+....+|.++.||..|+-.++.+
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 533222 2 6777777778899999998887766555
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.67 E-value=1.1 Score=51.67 Aligned_cols=289 Identities=12% Similarity=0.096 Sum_probs=157.8
Q ss_pred HHHHHHHhhhhhcccchhhH---HhhhhhccCCCchhHHHHHHHHHHHhcCCCCCh-hhHHHHHHHhc--cCCChHHHHH
Q 005098 234 KMSAAASLGMILLWDVDSGL---AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-DPALALLSEYV--GREDACIRIG 307 (714)
Q Consensus 234 ~~~a~aslGlI~~~~~~~~l---~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~-d~~~~lL~~~L--~~~~~~v~~g 307 (714)
|-.+-.++...-..+.+..+ ..+.+=+.++++++++-|+-++|.+.. .+. +.+...+...+ .+.++++|--
T Consensus 91 Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~ 167 (621)
T 2vgl_A 91 KQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQS 167 (621)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 44444444444444544433 234455668899999999999999843 111 22334445567 7889999999
Q ss_pred HHHHHHHHhccCCC----HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHH----HHHHHHHHH---hhcCcc-
Q 005098 308 AIMGLGISYAGTQN----DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE----VAQAIIFAL---MDRSES- 375 (714)
Q Consensus 308 A~lGLGl~y~Gs~~----~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~----~~e~Ll~~L---~~~~~~- 375 (714)
|++++.-+|.-..+ ++..+.|...+.|++. -+..+|..+++-+.- .+++ .+..+.+.| ....+.
T Consensus 168 A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~--~V~~~a~~~l~~i~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~ 243 (621)
T 2vgl_A 168 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHL--GVVTAATSLITTLAQ--KNPEEFKTSVSLAVSRLSRIVTSASTD 243 (621)
T ss_dssp HHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCH--HHHHHHHHHHHHHHH--HCHHHHTTHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCc--cHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999998874321 1577788888877543 344455555555432 2222 122222222 111111
Q ss_pred -c------cCchhHhHHHHHHhHhhcCCh---hhHHHHHHHHhhc-------h------hh----hhhhhHHHHHHHHhh
Q 005098 376 -E------LGEPLTRLIPLGLGLLYLGKQ---ESVEATAEVSKTF-------N------EK----IRKYCDMTLLSCAYA 428 (714)
Q Consensus 376 -~------l~~~~~r~a~l~lgLi~lG~~---e~~~~ll~~L~~~-------~------~~----~~r~~~~~~~glaya 428 (714)
+ ..++|.+...+-+ |..+++. +..+.+.+.+..+ + +. -.-+.+ +..+.+.
T Consensus 244 ~~~~~~~~~~~~w~qi~il~l-l~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea--~~~i~~l 320 (621)
T 2vgl_A 244 LQDYTYYFVPAPWLSVKLLRL-LQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEA--ISLIIHH 320 (621)
T ss_dssp CSTTEETTEESHHHHHHHHHH-GGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ccchhhcCCCCchHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHH--HHHHHhc
Confidence 0 1256776655533 2234442 3333333322211 0 00 111111 1122223
Q ss_pred cCCCH----HHHHHHHhhccccCCCCccccchhHHHHHHhhcccch---hhhhHHHHHHHHHh-cCCHHHHhhHHHHHhh
Q 005098 429 GTGNV----LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL---GLEMAIRSLEHLLQ-YGEQNIRRAVPLALGL 500 (714)
Q Consensus 429 GtGn~----~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~---~~~~~~~~l~~L~~-~~~~~vr~g~~lALGl 500 (714)
+ .+. .++..|..++.+. + +++|-.++-++..+....|. -......++.- +. +.|+.||.-+.=.+--
T Consensus 321 ~-~~~~~~~~~~~~L~~~L~~~-~--~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~-L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 321 D-SEPNLLVRACNQLGQFLQHR-E--TNLRYLALESMCTLASSEFSHEAVKTHIETVINA-LKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp C-CCHHHHHHHHHHHHHHSSCS-C--HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHH-HTTCCCHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHHhcCC-C--cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHH
Confidence 3 232 3455566665422 2 37888899999999877641 01112223333 35 7788888765544444
Q ss_pred hccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 501 LCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 501 ~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
++-.++-..+++.|..++.+.|.++|..++.++|.+.
T Consensus 396 l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 396 MCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4333344667788888888999999988888888765
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.66 E-value=0.037 Score=57.90 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhh-----HHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc--
Q 005098 435 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-- 507 (714)
Q Consensus 435 ~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~-----~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-- 507 (714)
++..|++.+.++.+ ..+++.|+-+|+-+.-+.+.+.+. ....+-.++++.++.++.-++.||+-++.|++.
T Consensus 125 ~l~~Ll~LL~~~~~--~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 125 ALRKLLRLLDRDAC--DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHHHHHCSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHccCCC--HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 45567777664333 278888999998887766532221 233455666788999999999999988877653
Q ss_pred -----HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 508 -----VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 508 -----~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
..++..|-.+++.++..|+..|.-+++-+..+
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 23556777788888889999999999888776
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.54 E-value=3.8 Score=45.23 Aligned_cols=262 Identities=13% Similarity=0.044 Sum_probs=129.4
Q ss_pred hhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Q 005098 241 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 320 (714)
Q Consensus 241 lGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 320 (714)
.+....|+.++++..+++.+.........-..++.+....|. .+.+..++...+........ +...+|.+|...+
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 387 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE---KNKLYLISNDLVDRHPEKAV--TWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTSHH--HHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCcccHH--HHHHHHHHHHHhc
Confidence 345567888888888777664322223333333444444553 34466666665542222222 2333445554444
Q ss_pred C-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh
Q 005098 321 N-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 398 (714)
Q Consensus 321 ~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e 398 (714)
+ ++..+.+...+. ++. ..+ +-..+|.++.-.++.+-+..+++.+.+..+. .......++..+...|+-+
T Consensus 388 ~~~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQ-FGP----AWIGFAHSFAIEGEHDQAISAYTTAARLFQG----THLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT----CSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCCHH
Confidence 4 345555544443 221 122 2334444444445555455555544432211 1223445666777778877
Q ss_pred hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhcccc-----CCCCccccchhHHHHHHhhcccchhhh
Q 005098 399 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH-----HEKGEAYQGPAVLGIAMVAMAEELGLE 473 (714)
Q Consensus 399 ~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~-----~~~~~~vrr~avl~lalI~~~~~~~~~ 473 (714)
++...++.......... .....++..|...|+.+...++++-+.+. .+++........++.++...|+. +
T Consensus 459 ~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~---~ 533 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDP--LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY---D 533 (597)
T ss_dssp HHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH---H
T ss_pred HHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH---H
Confidence 77777766554322111 22345667777888854443333322111 11100134455566666666775 7
Q ss_pred hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhh-cCCch
Q 005098 474 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDS 523 (714)
Q Consensus 474 ~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~-~D~~~ 523 (714)
.+.+.++........+. .+-..+|.++...|+ .++++.+.+.. .+|++
T Consensus 534 ~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDA--NVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHSSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 78888877765432222 223344444444444 56667777664 35554
No 59
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.35 E-value=0.73 Score=46.32 Aligned_cols=172 Identities=11% Similarity=0.078 Sum_probs=108.1
Q ss_pred HHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhc-
Q 005098 388 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM- 466 (714)
Q Consensus 388 ~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~- 466 (714)
+..+.---..+..-.+.+.|-..+..-.|+.++..+|-+ +-+..+...+...+..+.+= .||-.+..+++-++.
T Consensus 60 a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~---~~~~~~L~~ir~~va~D~~W--rVre~lA~a~~~~~~~ 134 (240)
T 3l9t_A 60 ALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL---SKDKEILIFMRDEVSKDNNW--RVQEVLAKAFDEFCKK 134 (240)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT---TTSHHHHHHHHHTGGGCSCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc---cCcHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHh
Confidence 444444444566667777777777677888877765543 44444444444433333321 456566666666664
Q ss_pred ccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhh----hccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 467 AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL----LCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 467 ~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl----~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
..| +.+...+...+++.|++||+.+...+=. ...-+.-..++..|.++..|++.+||.+ +|-.+=...-.|
T Consensus 135 ~~p---e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKS--Van~LrD~SK~~ 209 (240)
T 3l9t_A 135 IEY---KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKS--VGNALRDISKKF 209 (240)
T ss_dssp HCT---TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHH--HHHHHHHHHTTC
T ss_pred cCH---HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHH--HHHHHHHHhhhC
Confidence 444 5567788889999999999999888632 1122344557788999999999999986 444444444445
Q ss_pred hH-HHHHHHHHHhhhccChhHHHHHHHHHhh
Q 005098 543 AR-IAGMLRNLSSYYYKDANLLFCVRIAQGL 572 (714)
Q Consensus 543 ~r-v~~~lr~l~~~~~~d~~~~~~~~lA~Gl 572 (714)
|. |.+++.+ ....+|.+.+.++.|.-.
T Consensus 210 Pd~V~~~~~~---w~~~~~~~~~i~k~A~k~ 237 (240)
T 3l9t_A 210 PDLVKIELKN---WKLESKEINQVYKLASKF 237 (240)
T ss_dssp HHHHHHHHHT---CCCCSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH---hhccCHhHHHHHHHHHhh
Confidence 53 4344333 334578888888887644
No 60
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.16 E-value=0.093 Score=52.35 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=65.7
Q ss_pred HHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCC-Cc-------
Q 005098 436 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN-PK------- 507 (714)
Q Consensus 436 i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt-~~------- 507 (714)
+..++..+.+. + ..+|..+.-++.-++-.-+. +.+...+...+++.+|.+|..+.-.|+-+.... +.
T Consensus 100 lp~ll~~l~d~-~--~~vr~~a~~aL~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 100 VPSLLEKFKEK-K--PNVVTALREAIDAIYASTSL--EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHGGGCC-C--HHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHcCC-C--HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 44555555432 2 26777777666655543332 333333334456678999999999999854332 22
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 005098 508 VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 508 ~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~ 541 (714)
..++..|.++++|++..||..|+-++|.++.--+
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 2566777888899999999999999998874333
No 61
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.77 E-value=1.4 Score=46.98 Aligned_cols=89 Identities=18% Similarity=0.067 Sum_probs=59.8
Q ss_pred ccchhHHHHHHhhc---ccchhhh------hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHH
Q 005098 453 YQGPAVLGIAMVAM---AEELGLE------MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSR 516 (714)
Q Consensus 453 vrr~avl~lalI~~---~~~~~~~------~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~ 516 (714)
++..+.-++.-++. +.+...+ .++.++ .++++++..++..++.+|+-++.+++.. .++..|..
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~ 312 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL-QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 312 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHH-HHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH
Confidence 55555555555554 3432211 133333 4556788899999999999887776432 23566777
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 517 LSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 517 l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
++++.+..++..|.-||.-+..++.+
T Consensus 313 LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 313 LIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 88888888999999999888887654
No 62
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.59 E-value=1.6 Score=48.32 Aligned_cols=292 Identities=9% Similarity=-0.011 Sum_probs=148.4
Q ss_pred hcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-Hh
Q 005098 245 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQ 323 (714)
Q Consensus 245 ~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~ 323 (714)
..|+.+++...+++.+.. .+....-..+|.+....|. .+.++.++...+........ +...++.++...++ ++
T Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSR---FIDVLAITTKILEIDPYNLD--VYPLHLASLHESGEKNK 357 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCCT--THHHHHHHHHHHTCHHH
T ss_pred CcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHcCcccHH--HHHHHHHHHHHhCCHHH
Confidence 456778888877766543 2333333344445555554 34477777666532111111 12222333333333 34
Q ss_pred HHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHH
Q 005098 324 IRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 402 (714)
Q Consensus 324 i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ 402 (714)
..+.+...+. ++. .. .+-..+|.++.-.++.+-+...+..+.+..+ . .......++.++...|+.+++..
T Consensus 358 A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 358 LYLISNDLVDRHPE-KA----VTWLAVGIYYLCVNKISEARRYFSKSSTMDP---Q-FGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHHHHHHHHHCTT-SH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhCcc-cH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444443 221 12 2444567777777776666666555443221 1 12234566777778888888887
Q ss_pred HHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHH
Q 005098 403 TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 482 (714)
Q Consensus 403 ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L 482 (714)
.++......... ......++.+|...|+.+...+++.-+.+...+ +......++..+...|+. +.+.+.++..
T Consensus 429 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~---~~A~~~~~~~ 501 (597)
T 2xpi_A 429 AYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLNELGVVAFNKSDM---QTAINHFQNA 501 (597)
T ss_dssp HHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCH---HHHHHHHHHH
T ss_pred HHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCH---HHHHHHHHHH
Confidence 776655432211 122345677788888865555544443322111 344455566666666665 7777777776
Q ss_pred Hhc-----CCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHh
Q 005098 483 LQY-----GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSS 554 (714)
Q Consensus 483 ~~~-----~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~-~D~~~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~~ 554 (714)
... .+|.-...+-..+|..+...|+ .+|++.+.+.. .+|++. .+...+|.+....++ .+..+.+++..+
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA---NVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 543 1444222333444444444444 45667777664 355432 223455555554454 234455665555
Q ss_pred hhccChh
Q 005098 555 YYYKDAN 561 (714)
Q Consensus 555 ~~~~d~~ 561 (714)
....++.
T Consensus 579 ~~p~~~~ 585 (597)
T 2xpi_A 579 ISPNEIM 585 (597)
T ss_dssp HCTTCHH
T ss_pred cCCCChH
Confidence 4334443
No 63
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.48 E-value=2.4 Score=43.28 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=71.2
Q ss_pred hcccchhhHHhhhhhccCCCch-hHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-H
Q 005098 245 LLWDVDSGLAQIDKYFHSTDNH-VIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 322 (714)
Q Consensus 245 ~~~~~~~~l~~l~~yL~s~~~~-~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~ 322 (714)
+.|+...+++...++...+.+. ...-.+++-..+..|. .+.++..+.. .++. ..-+...++-.+.+..+ +
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~---~~~al~~~~~----~~~~-~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRK---YGVVLDEIKP----SSAP-ELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTC---HHHHHHHSCT----TSCH-HHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCC---HHHHHHHhcc----cCCh-hHHHHHHHHHHHcCCCcHH
Confidence 4567777776666654433222 2333445555555553 2335543322 2222 33455556666666554 4
Q ss_pred hHHHHHHhhhcC---CCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhh
Q 005098 323 QIRHKLSTILND---AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 399 (714)
Q Consensus 323 ~i~e~L~~~l~d---~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~ 399 (714)
+..+.+...+.+ ++ +. .+-+.+|.++...++.+-+...+. + + .. ......+|..+..+|+.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~-~~----~~~~~la~~~~~~g~~~~Al~~l~----~-~---~~-~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVT-NT----TFLLMAASIYFYDQNPDAALRTLH----Q-G---DS-LECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHHHHHHHHHHSCCCCS-CH----HHHHHHHHHHHHTTCHHHHHHHHT----T-C---CS-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccCCC-CH----HHHHHHHHHHHHCCCHHHHHHHHh----C-C---CC-HHHHHHHHHHHHHCCCHHH
Confidence 556666655532 21 12 245667777777666544333332 1 1 11 1223334555666777777
Q ss_pred HHHHHHHHhh
Q 005098 400 VEATAEVSKT 409 (714)
Q Consensus 400 ~~~ll~~L~~ 409 (714)
+...++.+..
T Consensus 149 A~~~l~~~~~ 158 (291)
T 3mkr_A 149 ARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7766665543
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.44 E-value=6 Score=43.25 Aligned_cols=308 Identities=10% Similarity=0.022 Sum_probs=150.1
Q ss_pred hhHHHHHHHhhhhhcccc--h------hhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhh-----HHHHHHHhcc
Q 005098 232 HGKMSAAASLGMILLWDV--D------SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP-----ALALLSEYVG 298 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~--~------~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~-----~~~lL~~~L~ 298 (714)
..+..|+.+++-+-.++. + .++..|-+.|.++++.++..|+-+|.-+..++...... ++..|...|.
T Consensus 17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~ 96 (457)
T 1xm9_A 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR 96 (457)
T ss_dssp HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777766543332 1 13455667777888889999999999887642111011 2356677777
Q ss_pred -CCChHHHHHHHHHHHHHhccCCCHh-----HHHHHHhhhc--------CCC------ChhHHHHHHHHHHHhHhcCCCC
Q 005098 299 -REDACIRIGAIMGLGISYAGTQNDQ-----IRHKLSTILN--------DAK------SPLDVIAFSAISLGLIYVGSCN 358 (714)
Q Consensus 299 -~~~~~v~~gA~lGLGl~y~Gs~~~~-----i~e~L~~~l~--------d~~------~~~e~~~~AalaLGLi~lGs~~ 358 (714)
+++..++.-|+-.|+-+..+...++ .+..|...+. ++. ...++..-|+.+|+-+-.+..+
T Consensus 97 ~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~ 176 (457)
T 1xm9_A 97 RTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176 (457)
T ss_dssp TCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHH
Confidence 6678888888888888776644433 3445555552 110 1223444677777765432100
Q ss_pred -------HHHHHHHHHHHhhcC-ccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhh-chhhhh--hhhHHHHH----
Q 005098 359 -------EEVAQAIIFALMDRS-ESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKT-FNEKIR--KYCDMTLL---- 423 (714)
Q Consensus 359 -------~~~~e~Ll~~L~~~~-~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~-~~~~~~--r~~~~~~~---- 423 (714)
+.+++.|++.|.... ..+..++...-+...+.-+.+..+.........+.. ...+.. ...+++..
T Consensus 177 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (457)
T 1xm9_A 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDK 256 (457)
T ss_dssp HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------------------
T ss_pred HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchh
Confidence 023444555443210 000122222222212222211110000000000000 000000 00000000
Q ss_pred ----H--HH-------hhcC---CCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccc-----h-----hhhhHHH
Q 005098 424 ----S--CA-------YAGT---GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE-----L-----GLEMAIR 477 (714)
Q Consensus 424 ----g--la-------yaGt---Gn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~-----~-----~~~~~~~ 477 (714)
+ +. .-|+ -+..+++.|++.+.+..++ .++..|+-+++-+..++. + ..+.+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~--~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~ 334 (457)
T 1xm9_A 257 MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD--ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334 (457)
T ss_dssp ---------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHH
T ss_pred hhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH--HHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCch
Confidence 0 00 0000 1355566666665544332 566666666666654321 1 1244444
Q ss_pred HHHHHHhcCCHHHHhhHHHHHhhhccCCCc-----HHHHHHHHHhhcCCc------hHHHHHHHHHHHHHcCCCC
Q 005098 478 SLEHLLQYGEQNIRRAVPLALGLLCISNPK-----VNVMDTLSRLSHDTD------SEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 478 ~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-----~~ai~~L~~l~~D~~------~~Vr~~AiiAlGlV~aGt~ 541 (714)
.+-.|+++++..+++.++.+|.-++.+..+ ..++..|-+++..++ +.+...++-+++-+..+++
T Consensus 335 ~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~ 409 (457)
T 1xm9_A 335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409 (457)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH
Confidence 555666778888888888888877655422 245666666665542 4577777778888777665
No 65
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.44 E-value=3.9 Score=40.69 Aligned_cols=255 Identities=12% Similarity=0.008 Sum_probs=127.0
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC-C
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ-N 321 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~-~ 321 (714)
....|+.++++..+.+.+.........-..++..+...|. .+.++..+...+...... ..+...+|.++...+ +
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK---ANELFYLSHKLVDLYPSN--PVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTS--THHHHHHHHHHHHSCSC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh---HHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhhhh
Confidence 3445889999988877765333322222223333344443 344777676665422111 134556667776666 4
Q ss_pred -HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhh
Q 005098 322 -DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 399 (714)
Q Consensus 322 -~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~ 399 (714)
++..+.+...+. ++. ..+ +-..+|.++.-.++.+.+...+.......+. . ......+|..+...|+-+.
T Consensus 107 ~~~A~~~~~~a~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~-~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 107 NEHARRYLSKATTLEKT-YGP----AWIAYGHSFAVESEHDQAMAAYFTAAQLMKG---C-HLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CTH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT---C-SHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhccc---c-HHHHHHHHHHHHHHhhHHH
Confidence 456666666664 332 222 3456666666666665554444443332221 1 1122335666777787777
Q ss_pred HHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhcccc----CCC---CccccchhHHHHHHhhcccchhh
Q 005098 400 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH----HEK---GEAYQGPAVLGIAMVAMAEELGL 472 (714)
Q Consensus 400 ~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~----~~~---~~~vrr~avl~lalI~~~~~~~~ 472 (714)
+...++......... ......+|..|...|+.....+.+.-+.+. ... .........+|..+...++.
T Consensus 178 A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--- 252 (330)
T 3hym_B 178 AERFFSQALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY--- 252 (330)
T ss_dssp HHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHhCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH---
Confidence 777766555432211 123345677788888854433333222211 110 01223344455555555665
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhh
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLS 518 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~ 518 (714)
+.+.+.++...+....+. .+-..+|.++.-.+ ..++++.+.+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNA--STYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccch--HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666666666554321111 12233333333323 345666666654
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.28 E-value=0.24 Score=51.73 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=86.0
Q ss_pred cccchhHHHHHHhhcccchhhh------hHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhh
Q 005098 452 AYQGPAVLGIAMVAMAEELGLE------MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLS 518 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~------~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~ 518 (714)
.+|..|+-+||-+..++|..++ -++.++..|..+.++.+|..++.||+-++.|++.. .++..|.+++
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL 176 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM 176 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 7888899999988877763222 23445544444457899999999999998887542 3556788888
Q ss_pred cCCchHHHHHHHHHHHHHcCCCCchH--HH--HHHHHHHhhh-ccChhHHHHHHHHHhhhhcC
Q 005098 519 HDTDSEVAMAAVISLGLIGSGTNNAR--IA--GMLRNLSSYY-YKDANLLFCVRIAQGLVHMG 576 (714)
Q Consensus 519 ~D~~~~Vr~~AiiAlGlV~aGt~n~r--v~--~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G 576 (714)
++++..|+..|..+++-+..|+++.+ +. ..++.|.... +.|+.++-.+.-|+|-+.-|
T Consensus 177 ~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 177 QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999888755321 11 1223333322 45777777777777766544
No 67
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.24 E-value=0.006 Score=62.19 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=40.3
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcC
Q 005098 255 QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILND 334 (714)
Q Consensus 255 ~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d 334 (714)
++..++.+++..+|..|...++ ...|...+.+++..||..++-.|+ . +.|...+.|
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l~-------------~~~l~~L~~D~~~~VR~~aA~~L~--------~---~~L~~ll~D 109 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYSP-------------VEALTPLIRDSDEVVRRAVAYRLP--------R---EQLSALMFD 109 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSC-------------GGGGGGGTTCSSHHHHHHHHTTSC--------S---GGGGGTTTC
T ss_pred HHHHHhcCCCHHHHHHHHHhCC-------------HHHHHHHccCcCHHHHHHHHHHCC--------H---HHHHHHHcC
Confidence 3556667778888877776431 112455667888888888776532 1 345555566
Q ss_pred CCChhHHHHHHHHH
Q 005098 335 AKSPLDVIAFSAIS 348 (714)
Q Consensus 335 ~~~~~e~~~~Aala 348 (714)
++ .++..+++..
T Consensus 110 ~d--~~VR~~aA~~ 121 (244)
T 1lrv_A 110 ED--REVRITVADR 121 (244)
T ss_dssp SC--HHHHHHHHHH
T ss_pred CC--HHHHHHHHHh
Confidence 54 3444445443
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.21 E-value=2.2 Score=42.09 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=97.5
Q ss_pred HHHHHHHhhccccCCCCccccchhHHHHHHhhc--ccchhhhhHHHHHHHH---HhcCCHHHHhhHHHHHhhhccCCCcH
Q 005098 434 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM--AEELGLEMAIRSLEHL---LQYGEQNIRRAVPLALGLLCISNPKV 508 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~--~~~~~~~~~~~~l~~L---~~~~~~~vr~g~~lALGl~~aGt~~~ 508 (714)
+.++.|.+.+..+.+ ..++..+.-+++.++- +... ...+..++..+ +.+.++.||.+++-|+.-++...+-.
T Consensus 56 ~i~~~L~~~l~kd~~--~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 132 (242)
T 2qk2_A 56 ALVSALKKVITKDSN--VVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132 (242)
T ss_dssp HHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 344445554432333 2677788888877763 2221 12233333333 35677999999999999887777777
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHhhh-ccChhHHHHHHHHHhhhhcCCCcccc
Q 005098 509 NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-----ARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLLTL 582 (714)
Q Consensus 509 ~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n-----~rv~~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G~g~~tl 582 (714)
.+++.|...+.+.+..||..++-.++.+..-.+. +.+..++..|.... ..++.+|-++.-++|.+..-=|.-.+
T Consensus 133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 8888888888999999999999999987654321 23334444444433 35777888888888888744455446
Q ss_pred cccC
Q 005098 583 NPYH 586 (714)
Q Consensus 583 s~~~ 586 (714)
.|+.
T Consensus 213 ~~~l 216 (242)
T 2qk2_A 213 TPLL 216 (242)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 6653
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=92.86 E-value=5.9 Score=43.69 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHHhcCCHHHHhhHHHHHhhhccCCCcH-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 480 EHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 480 ~~L~~~~~~~vr~g~~lALGl~~aGt~~~-------~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
-.++.+++..++..++.||+-++++++.. .++..|..+++..+..++..|..||.-+....
T Consensus 385 v~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 385 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 34557788899999999999988776432 23566777888888999999999998887754
No 70
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.83 E-value=1.7 Score=46.42 Aligned_cols=141 Identities=15% Similarity=0.069 Sum_probs=76.5
Q ss_pred cccchhHHHHHHhhccc-ch----h-hhhHHHHHHHHHhcCCH----HHHhhHHHHHhhhcc---CCCcH-------HHH
Q 005098 452 AYQGPAVLGIAMVAMAE-EL----G-LEMAIRSLEHLLQYGEQ----NIRRAVPLALGLLCI---SNPKV-------NVM 511 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~-~~----~-~~~~~~~l~~L~~~~~~----~vr~g~~lALGl~~a---Gt~~~-------~ai 511 (714)
.+++.++-++.-++... +. . ..-+...+-.++++.++ .++..++.+|.-++. ++... .++
T Consensus 186 ~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i 265 (354)
T 3nmw_A 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 265 (354)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCH
Confidence 55666666666665522 21 1 11122333444555443 477777777776653 44332 245
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH--HH--HHHHHHHhhh-ccChhHHHHHHHHHhhhhcCCCcccccccC
Q 005098 512 DTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR--IA--GMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLLTLNPYH 586 (714)
Q Consensus 512 ~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~r--v~--~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~G~g~~tls~~~ 586 (714)
..|-.++++++..++..|.-+++-+..|+.+.+ +. ..+..|-... +.++..+..+.-|+.-+..+... .+
T Consensus 266 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~-----~~ 340 (354)
T 3nmw_A 266 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA-----KY 340 (354)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG-----GG
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH-----HH
Confidence 667788889999999999999999977654321 10 1122222222 46777888888888888777443 23
Q ss_pred CCCCCCChHHH
Q 005098 587 SDRFLLSPTAL 597 (714)
Q Consensus 587 sd~~~~~~~a~ 597 (714)
.|..++++++.
T Consensus 341 ~~~~~~~~~~~ 351 (354)
T 3nmw_A 341 KDANIMSPGSS 351 (354)
T ss_dssp C----------
T ss_pred hhhcccCCcCc
Confidence 45556666653
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.68 E-value=8.1 Score=45.33 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=65.8
Q ss_pred HHHHHhhccccCCCCccccchhHHHHHHhhcccch-hhhhH----------HHHHHHHHhcCCHHHHhhHHHHHhhhccC
Q 005098 436 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL-GLEMA----------IRSLEHLLQYGEQNIRRAVPLALGLLCIS 504 (714)
Q Consensus 436 i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~-~~~~~----------~~~l~~L~~~~~~~vr~g~~lALGl~~aG 504 (714)
+..|..++.++ + +.+||+|+-.++-++...+. .++.. .+++-.|++..|+.+|++++.||+.+..+
T Consensus 608 ~~~L~~LL~s~-n--~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 608 WSTIENLMLDE-N--VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHGGGCS-S--HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-C--HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 34455555433 2 27899999998888875541 01111 33555677889999999999999998766
Q ss_pred CCc--------HHHHHHHHHhhcC--CchHHHHHHHHHH-HHH
Q 005098 505 NPK--------VNVMDTLSRLSHD--TDSEVAMAAVISL-GLI 536 (714)
Q Consensus 505 t~~--------~~ai~~L~~l~~D--~~~~Vr~~AiiAl-GlV 536 (714)
.+. .+.++.|..+.++ .++.++..++..+ .++
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 654 3566777777777 6777777666655 444
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.44 E-value=2.4 Score=45.31 Aligned_cols=225 Identities=11% Similarity=0.126 Sum_probs=88.6
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHH----HHhh
Q 005098 256 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHK----LSTI 331 (714)
Q Consensus 256 l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~----L~~~ 331 (714)
|.+-+.++++++|+-|+=++|-+..... .+++...+...+.+.++++|-.|+++..-.+-- .+++.+. +...
T Consensus 109 l~kDl~~~N~~iR~lALRtL~~I~~~~m--~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v~~~~~~l~~l 184 (355)
T 3tjz_B 109 LTKDMTGKEDSYRGPAVRALCQITDSTM--LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVVKRWVNEAQEA 184 (355)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHH
T ss_pred HHhhcCCCcHhHHHHHHHHHhcCCCHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHH
Confidence 3445567888999999999998865432 234556666677788899999988887766543 3455443 4444
Q ss_pred hcCCCChhHHHHHHHHHHHhHhc-CCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChh---hHHHHHHHH
Q 005098 332 LNDAKSPLDVIAFSAISLGLIYV-GSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---SVEATAEVS 407 (714)
Q Consensus 332 l~d~~~~~e~~~~AalaLGLi~l-Gs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e---~~~~ll~~L 407 (714)
+.|.+ .-++ +.|+ ++++- ...+..++..+++.+.+. .+..+|....-+= .+.-+++++ ..+.+++.+
T Consensus 185 l~d~n--~~V~-~~Al--~lL~ei~~~d~~a~~kLv~~l~~~---~l~~~~~q~~llr-~l~~~~~~d~~~~~~~~~~~l 255 (355)
T 3tjz_B 185 ASSDN--IMVQ-YHAL--GLLYHVRKNDRLAVSKMISKFTRH---GLKSPFAYCMMIR-VASRQLEDEDGSRDSPLFDFI 255 (355)
T ss_dssp TTCSS--HHHH-HHHH--HHHHHHHTTCHHHHHHHHHHHHSS---CCSCHHHHHHHHH-HHTCC----------------
T ss_pred hcCCC--ccHH-HHHH--HHHHHHHhhchHHHHHHHHHHhcC---CCcChHHHHHHHH-HHHHhccccchhhHHHHHHHH
Confidence 44543 2222 2332 33322 233555777777766431 1234444322111 111233332 233444433
Q ss_pred hhc---hhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHh
Q 005098 408 KTF---NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 484 (714)
Q Consensus 408 ~~~---~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~ 484 (714)
... .++-..| ++++.++.+-. ... ..+ ..+...++.++.
T Consensus 256 ~~~L~~~~~aVvy----------------Ea~k~I~~l~~--~~~--~~~------------------~~a~~~L~~fLs 297 (355)
T 3tjz_B 256 ESCLRNKHEMVVY----------------EAASAIVNLPG--CSA--KEL------------------APAVSVLQLFCS 297 (355)
T ss_dssp -CCCCCSSHHHHH----------------HHHHHHTC---------------------------------CCCTHHHHHH
T ss_pred HHHHcCCChHHHH----------------HHHHHHHhccC--CCH--HHH------------------HHHHHHHHHHHc
Confidence 221 0111111 22333333211 000 111 112223555666
Q ss_pred cCCHHHHhhHHHHHhhhccCCCcHHHHH----HHHHhhcCCchHHHHHHHHHH
Q 005098 485 YGEQNIRRAVPLALGLLCISNPKVNVMD----TLSRLSHDTDSEVAMAAVISL 533 (714)
Q Consensus 485 ~~~~~vr~g~~lALGl~~aGt~~~~ai~----~L~~l~~D~~~~Vr~~AiiAl 533 (714)
+.+|++|+.+--.|..+....| +++. .+..+.+|+|..++.-|+..|
T Consensus 298 s~d~niryvaLr~L~~l~~~~P--~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 298 SPKAALRYAAVRTLNKVAMKHP--SAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSSSSHHHHHHCC---------------------------------------
T ss_pred CCCchHHHHHHHHHHHHHHHCc--HHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 6778888877766666544333 3332 467788899888877666554
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.23 E-value=15 Score=40.51 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=68.2
Q ss_pred cccchhHHHHHHhhc-ccchh-----hhhHHHHHHHHHhcCCH----HHHhhHHHHHhhhcc---CCCcH-------HHH
Q 005098 452 AYQGPAVLGIAMVAM-AEELG-----LEMAIRSLEHLLQYGEQ----NIRRAVPLALGLLCI---SNPKV-------NVM 511 (714)
Q Consensus 452 ~vrr~avl~lalI~~-~~~~~-----~~~~~~~l~~L~~~~~~----~vr~g~~lALGl~~a---Gt~~~-------~ai 511 (714)
.+++.++-++.-+.. .++.. ..-+...+-.++++.++ .++..++.+|.-++. +++.. .++
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i 381 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccH
Confidence 556666666666655 22211 01123334445555443 377777777766653 55332 234
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH--HH--HHHHHHHhhh-ccChhHHHHHHHHHhhhhc
Q 005098 512 DTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR--IA--GMLRNLSSYY-YKDANLLFCVRIAQGLVHM 575 (714)
Q Consensus 512 ~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~r--v~--~~lr~l~~~~-~~d~~~~~~~~lA~Gll~~ 575 (714)
..|-.++++++..++..|+-+++-+..|+.+-+ +. ..+..|-... ++++..+..+..|+.=+..
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 567778888999999999999999987644311 10 1112222221 4566666666666554443
No 74
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=90.69 E-value=18 Score=37.84 Aligned_cols=303 Identities=10% Similarity=0.004 Sum_probs=157.0
Q ss_pred hhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Q 005098 241 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 320 (714)
Q Consensus 241 lGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 320 (714)
......|+.++++..+.+.+...... .-+...+|.++.... +.+.++..+...+...... ..+...+|.+|...+
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDN--YIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDF--TAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcC
Confidence 34455789999998888776533333 344555555554321 3345777777666532211 245566677776666
Q ss_pred CH-hHHHHHHhhhc-CCCChh---HHH--------HHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 005098 321 ND-QIRHKLSTILN-DAKSPL---DVI--------AFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 387 (714)
Q Consensus 321 ~~-~i~e~L~~~l~-d~~~~~---e~~--------~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l 387 (714)
+- +..+.+...+. ++. .. +.. ....+.+|.++...++.+.+...++.+.+..+ .+ ......+
T Consensus 109 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~-~~~~~~l 183 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV---WD-AELRELR 183 (450)
T ss_dssp CHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TC-HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC-hHHHHHH
Confidence 53 55566655554 332 22 210 01233456667777776655555555443221 11 2233445
Q ss_pred HHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhH---------
Q 005098 388 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAV--------- 458 (714)
Q Consensus 388 ~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~av--------- 458 (714)
|..+...|+-+++...++......... ......+|..|...|+.....+.+.-+.....+ .......
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHH
Confidence 666777788777777666554332111 123446677888889865444433333221111 1111111
Q ss_pred ---HHHHHhhcccchhhhhHHHHHHHHHhc--CCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhh-cCCchHHHHHHHH
Q 005098 459 ---LGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVI 531 (714)
Q Consensus 459 ---l~lalI~~~~~~~~~~~~~~l~~L~~~--~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~-~D~~~~Vr~~Aii 531 (714)
+|..+...++. +.+.+.++..+.. .++..+..+-..+|.++...++ .+|++.+.+.. .+|+.. .+..
T Consensus 260 ~~~~~~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 333 (450)
T 2y4t_A 260 LIESAEELIRDGRY---TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALK 333 (450)
T ss_dssp HHHHHHHHHHHTCH---HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHH
Confidence 25555555665 6677777766543 2444444455555655555444 45677777654 355432 2345
Q ss_pred HHHHHcCCCCc-hHHHHHHHHHHhhhccChhHH
Q 005098 532 SLGLIGSGTNN-ARIAGMLRNLSSYYYKDANLL 563 (714)
Q Consensus 532 AlGlV~aGt~n-~rv~~~lr~l~~~~~~d~~~~ 563 (714)
.+|.+....++ .+-...+++..+....++..+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 55555555554 233455555554433444443
No 75
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.43 E-value=13 Score=36.63 Aligned_cols=224 Identities=13% Similarity=0.011 Sum_probs=123.7
Q ss_pred hhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-H
Q 005098 244 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 322 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~ 322 (714)
...|+.++++..+.+.+....... -+...+|.++....++.+.+...+...+....... .+...+|.++...++ +
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHHHHHTCHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHccCHH
Confidence 456788888888887765433333 34555566554433234557777777765332211 235566666665555 3
Q ss_pred hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 323 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 323 ~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
+..+.+...+. ++. ..+ +.+.+|.++.-.++.+.+...+....+..+. + ......+|..+...|+-+++.
T Consensus 143 ~A~~~~~~a~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~-~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 143 QAMAAYFTAAQLMKG-CHL----PMLYIGLEYGLTNNSKLAERFFSQALSIAPE---D-PFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp HHHHHHHHHHHHTTT-CSH----HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---C-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccc-cHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---C-hHHHHHHHHHHHHcccHHHHH
Confidence 55555555553 222 112 3444788888888877666666655443221 1 223344566666677777777
Q ss_pred HHHHHHhhch----hh---hhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhh
Q 005098 402 ATAEVSKTFN----EK---IRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 474 (714)
Q Consensus 402 ~ll~~L~~~~----~~---~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~ 474 (714)
..++...... ++ -........+|..|...|+.....+.+.-+.+...+ .......+|..+...|+. +.
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~---~~ 288 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NASTYSAIGYIHSLMGNF---EN 288 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHHTCH---HH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHhccH---HH
Confidence 6665444321 11 111223456788888899965444433333222111 344445566666666776 67
Q ss_pred HHHHHHHHHhc
Q 005098 475 AIRSLEHLLQY 485 (714)
Q Consensus 475 ~~~~l~~L~~~ 485 (714)
+.+.++..++.
T Consensus 289 A~~~~~~al~~ 299 (330)
T 3hym_B 289 AVDYFHTALGL 299 (330)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHcc
Confidence 77777766543
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.15 E-value=5.3 Score=40.09 Aligned_cols=128 Identities=7% Similarity=-0.000 Sum_probs=78.1
Q ss_pred cccchh-HHHHHHHhhh-hhcc---------cchhhHHhhhhhc-cCCCchhHHHHHHHHHHHhcCCC-CChh-h----H
Q 005098 228 KNKEHG-KMSAAASLGM-ILLW---------DVDSGLAQIDKYF-HSTDNHVIAGALLGVGIVNCGIR-NDCD-P----A 289 (714)
Q Consensus 228 k~~~~~-~~~a~aslGl-I~~~---------~~~~~l~~l~~yL-~s~~~~~~~GAllaLGli~~G~~-~e~d-~----~ 289 (714)
..++|. |-.|..+++. +..+ +..+-+..+.+.+ .+++..++..|+-++|.+..|-. .+.. + +
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 356775 5566666666 5422 3344555666777 46777889999999999876554 3333 2 3
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccC------C-CHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCC
Q 005098 290 LALLSEYVGREDACIRIGAIMGLGISYAGT------Q-NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC 357 (714)
Q Consensus 290 ~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs------~-~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~ 357 (714)
+..+.+.+.++...++-.+..+|=.+...+ . -+++++.|.+.+.+.+ ..+...+.-.|+.+.--++
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~--~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcC
Confidence 344455666777777766555554444333 2 4578888888876542 3444466667776664443
No 77
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=89.95 E-value=19 Score=37.01 Aligned_cols=285 Identities=9% Similarity=-0.023 Sum_probs=145.5
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 321 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~- 321 (714)
....|+.++++..+.+-+....+...+-..+|......|...+ ++..+...+...... ..+...+|.++...++
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSALQYNPDL--YCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH---HHHHHHHHHHHCTTC--THHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCH
Confidence 3446888888888777664333333333334444444565433 666666555421111 1234456777766555
Q ss_pred HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH
Q 005098 322 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 322 ~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~ 400 (714)
++..+.+...+. ++.. . .+-..+|.++...++.+.+...++......+. .......+|..+...|.-+++
T Consensus 152 ~~A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNF-A----VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHHHHHHHHHHCTTC-H----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHH
Confidence 345555555553 3321 1 24557788888888776555555544432221 122233445555555665555
Q ss_pred HHHHHHH-hhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHH
Q 005098 401 EATAEVS-KTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 479 (714)
Q Consensus 401 ~~ll~~L-~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l 479 (714)
...++.. ...++. ......+|..|...|+.....+.+.-+.+...+ .......+|..+...|+. +.+.+.+
T Consensus 223 ~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~---~~A~~~~ 294 (388)
T 1w3b_A 223 VAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSV---AEAEDCY 294 (388)
T ss_dssp HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCH---HHHHHHH
T ss_pred HHHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence 5544433 322221 112345678888999965444444333322111 233345556666666765 6677777
Q ss_pred HHHHhcCCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHh
Q 005098 480 EHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSS 554 (714)
Q Consensus 480 ~~L~~~~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~~-D~~~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~~ 554 (714)
+...+....+.. +-..+|.++...++ .++++.+.+... +|+... +...+|.+....++ .+-...+++..+
T Consensus 295 ~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 295 NTALRLCPTHAD--SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---AHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH---HHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776654322222 22344555545444 456777777654 444322 23455555544443 233344444433
No 78
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=89.87 E-value=0.87 Score=45.79 Aligned_cols=98 Identities=9% Similarity=0.060 Sum_probs=69.7
Q ss_pred cCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHH-HHhcCCHHHHhhHHHHHhhhccCCCc
Q 005098 429 GTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH-LLQYGEQNIRRAVPLALGLLCISNPK 507 (714)
Q Consensus 429 GtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~-L~~~~~~~vr~g~~lALGl~~aGt~~ 507 (714)
.+.+.+.+-.|..-+-.+..+ .+|-.|+-.+|.. ... +.+...+.. +..+.+-.||..++.+++=.+...+.
T Consensus 65 ~~~~~~~~~~la~~L~~~~~d--eVR~~Av~lLg~~--~~~---~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p 137 (240)
T 3l9t_A 65 KSNDGEYIKKLAFLAYQSDVY--QVRMYAVFLFGYL--SKD---KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY 137 (240)
T ss_dssp HHSCHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHT--TTS---HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HhCCHHHHHHHHHHHHhCcch--HHHHHHHHHHHhc--cCc---HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 344444444554444444443 7888888877776 222 556666766 77788899999999999988763333
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHH
Q 005098 508 VNVMDTLSRLSHDTDSEVAMAAVISL 533 (714)
Q Consensus 508 ~~ai~~L~~l~~D~~~~Vr~~AiiAl 533 (714)
.++++.+...+.|++..||+.|+.++
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 45778889999999999999888875
No 79
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.73 E-value=6.5 Score=48.08 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=132.9
Q ss_pred chhHHHHHHHhhccCCCChhHHHHhhhccCCCCCCcchhhHHHhHHHHHHHHHHhhccC-CCcccccCCCCCCCCCcccc
Q 005098 147 SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNW 225 (714)
Q Consensus 147 ~~~~~~~~~~l~~~~~k~~~~iyk~~l~~~~~~~~~~~dsa~~~la~~~~na~~~aG~~-~d~~l~~~~~~~~~~~~~~w 225 (714)
...|..+.+.+..++.+..+.+|+..-. + ...+ ..|..|+..+|+. +-+++.. |
T Consensus 310 ~~~f~~Lv~~lR~~~~e~L~~l~~~~~~--~-------~~~r----~~~lDal~~aGT~~a~~~i~~------------~ 364 (1056)
T 1lsh_A 310 PAKFLRLTAFLRNVDAGVLQSIWHKLHQ--Q-------KDYR----RWILDAVPAMATSEALLFLKR------------T 364 (1056)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHTT--S-------HHHH----HHHHHHHHHHCSHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc--c-------HHHH----HHHHHHhHhcCCHHHHHHHHH------------H
Confidence 4568888888888888888888877532 1 1122 2489999999988 5445544 7
Q ss_pred cccccch-hHHHHHHHhhhhhcc-cchhhHHhhhhhccC----CCchhHHHHHHHHHHHhcC---CCCC-----hhhHHH
Q 005098 226 LFKNKEH-GKMSAAASLGMILLW-DVDSGLAQIDKYFHS----TDNHVIAGALLGVGIVNCG---IRND-----CDPALA 291 (714)
Q Consensus 226 l~k~~~~-~~~~a~aslGlI~~~-~~~~~l~~l~~yL~s----~~~~~~~GAllaLGli~~G---~~~e-----~d~~~~ 291 (714)
|.+.+-- ..+.-+.+. ..|.- -..+.++.+.+++.+ +++..+-.+++|+|-+-.. .... ..++..
T Consensus 365 i~~~~l~~~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~ 443 (1056)
T 1lsh_A 365 LASEQLTSAEATQIVAS-TLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHD 443 (1056)
T ss_dssp HHTTCSCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHH
T ss_pred HHcCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 6554321 121111111 12221 223455555566543 4567778899998754321 1111 234556
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcC-----CCChhHHHHHHHHHHHhHhcCCCCH-HHHHHH
Q 005098 292 LLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILND-----AKSPLDVIAFSAISLGLIYVGSCNE-EVAQAI 365 (714)
Q Consensus 292 lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d-----~~~~~e~~~~AalaLGLi~lGs~~~-~~~e~L 365 (714)
+|.+.+.+.+..-+.-++-|||-+ |. +..++.|.+++.. .+...+++.+|..||-.+- ...+ .+-+.+
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~--g~--p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~--~~~p~~v~~il 517 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNA--GQ--PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA--KRDPRKVQEIV 517 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--TC--GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG--GTCHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHhhcc--CC--hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh--hhchHHHHHHH
Confidence 666777777777888999999974 43 5678888888852 2234567678999998875 3343 455666
Q ss_pred HHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhc
Q 005098 366 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTF 410 (714)
Q Consensus 366 l~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~ 410 (714)
++.+++.. .+.-.|.+|+-+-+-.--.....+.+.+.+...
T Consensus 518 ~~i~~n~~----e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~~E 558 (1056)
T 1lsh_A 518 LPIFLNVA----IKSELRIRSCIVFFESKPSVALVSMVAVRLRRE 558 (1056)
T ss_dssp HHHHHCTT----SCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTC
T ss_pred HHHhcCCC----CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhhC
Confidence 67665432 233446555332221112334566666666653
No 80
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=89.16 E-value=25 Score=37.25 Aligned_cols=17 Identities=6% Similarity=-0.107 Sum_probs=10.1
Q ss_pred hhcccchhhHHhhhhhc
Q 005098 244 ILLWDVDSGLAQIDKYF 260 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL 260 (714)
...|+.+++...+.+.+
T Consensus 84 ~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 34567777766655443
No 81
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=87.70 E-value=16 Score=36.88 Aligned_cols=254 Identities=15% Similarity=0.092 Sum_probs=114.8
Q ss_pred cccchhhHH-hhhhhcc--CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-
Q 005098 246 LWDVDSGLA-QIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 321 (714)
Q Consensus 246 ~~~~~~~l~-~l~~yL~--s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~- 321 (714)
.++.++++. .+.+-+. ..++....-+++.+|..+.... +-+.++..+...+...... ..+...+|.+|...++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKH--MEAWQYLGTTQAENEQE 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCcCH
Confidence 346666665 4443332 2333333444555555554322 3345777777776543222 2355667777776665
Q ss_pred HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHH--------------H
Q 005098 322 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLI--------------P 386 (714)
Q Consensus 322 ~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a--------------~ 386 (714)
++..+.+...+. ++. .. .+-..+|.++...++.+.+...+.......+.. .. ..... .
T Consensus 115 ~~A~~~~~~al~~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQ----TALMALAVSFTNESLQRQACEILRDWLRYTPAY-AH-LVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GG-GCC---------------CT
T ss_pred HHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH-HHHHHHHHhhhhcccHHHHH
Confidence 355666655553 332 22 255677788877777766555555544332221 11 11000 1
Q ss_pred HHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhc
Q 005098 387 LGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM 466 (714)
Q Consensus 387 l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~ 466 (714)
++.-+ ..|+-+.+...++.................+|..|...|+.....+.+.-+.+...+ .......+|..+...
T Consensus 188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 188 LGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWNKLGATLANG 264 (368)
T ss_dssp THHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred HHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHc
Confidence 22222 334444444444433322111101223345677888888855444333332221111 333344555555566
Q ss_pred ccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHh
Q 005098 467 AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRL 517 (714)
Q Consensus 467 ~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l 517 (714)
++. +.+.+.++..+........ +-..+|.++...++ .+|++.+.+.
T Consensus 265 g~~---~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 265 NQS---EEAVAAYRRALELQPGYIR--SRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp TCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 665 6677777666543221111 22333333333333 4555555554
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=87.68 E-value=2.9 Score=44.60 Aligned_cols=109 Identities=9% Similarity=-0.067 Sum_probs=69.1
Q ss_pred chhHHHHHHHhhhhhcccchhhHH-hhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 005098 231 EHGKMSAAASLGMILLWDVDSGLA-QIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 309 (714)
Q Consensus 231 ~~~~~~a~aslGlI~~~~~~~~l~-~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~ 309 (714)
+..+..|.-++|.|.....-+.+. .+..-+.+.++|+|-.|+++..-++.-...-....++.+.+.+.+.++.++..|+
T Consensus 118 ~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al 197 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHAL 197 (355)
T ss_dssp HHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHH
T ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 467888899999988766533332 4555566899999999999987665432111112334556667788888887665
Q ss_pred HHHHHHhccCCCHhHHHHHHhhhcCCCChhHH
Q 005098 310 MGLGISYAGTQNDQIRHKLSTILNDAKSPLDV 341 (714)
Q Consensus 310 lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~ 341 (714)
-.|--+. ..++..+..|.+.+.+.....++
T Consensus 198 ~lL~ei~--~~d~~a~~kLv~~l~~~~l~~~~ 227 (355)
T 3tjz_B 198 GLLYHVR--KNDRLAVSKMISKFTRHGLKSPF 227 (355)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHSSCCSCHH
T ss_pred HHHHHHH--hhchHHHHHHHHHHhcCCCcChH
Confidence 5555543 23555677777776543232344
No 83
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.25 E-value=39 Score=35.23 Aligned_cols=299 Identities=9% Similarity=0.032 Sum_probs=136.8
Q ss_pred ccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-HhHHHHHHhhhc-CCCC
Q 005098 260 FHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKS 337 (714)
Q Consensus 260 L~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~ 337 (714)
+.........-..+|......|. -+.++..+...+...... ..+...+|.+|...++ ++..+.+...+. ++..
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQ---LADALSQFHAAVDGDPDN--YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccccHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 33333444444444444444443 345777777766522112 4566777777776665 355566655554 3321
Q ss_pred hhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccC---chhHh---------HHHHHHhHhhcCChhhHHHHHH
Q 005098 338 PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELG---EPLTR---------LIPLGLGLLYLGKQESVEATAE 405 (714)
Q Consensus 338 ~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~---~~~~r---------~a~l~lgLi~lG~~e~~~~ll~ 405 (714)
. .+-..+|.++.-.++.+-+...+..+.+..+.. . +.+.. ....|..+...|.-+.+...++
T Consensus 94 -~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 94 -T----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp -H----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 355677777777777666666665554332211 1 11111 1112333444555555555555
Q ss_pred HHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhc
Q 005098 406 VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY 485 (714)
Q Consensus 406 ~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~ 485 (714)
......... ......+|.+|...|+.....+.+.-+.+...+ .......+|..+...|+. +.+.+.++.....
T Consensus 168 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 168 KILEVCVWD--AELRELRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQLGDH---ELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred HHHHhCCCC--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHh
Confidence 444322111 122345667777777743322222222111111 334444555555556665 6677777666543
Q ss_pred CC--HHHHhhH--------HHHHhhhccCCC-cHHHHHHHHHhhc-CCc-hHHHHHHHHHHHHHcCCCCch-HHHHHHHH
Q 005098 486 GE--QNIRRAV--------PLALGLLCISNP-KVNVMDTLSRLSH-DTD-SEVAMAAVISLGLIGSGTNNA-RIAGMLRN 551 (714)
Q Consensus 486 ~~--~~vr~g~--------~lALGl~~aGt~-~~~ai~~L~~l~~-D~~-~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~ 551 (714)
.. +...... .+.+|..+...+ -.++++.+.+... +|+ ......+...+|.+....++. +....+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22 2221111 112233333333 3455666665532 333 223334455566665555542 33344444
Q ss_pred HHhhhccChhHHHHHHHHHhhhhcCCCcc
Q 005098 552 LSSYYYKDANLLFCVRIAQGLVHMGKGLL 580 (714)
Q Consensus 552 l~~~~~~d~~~~~~~~lA~Gll~~G~g~~ 580 (714)
.......++ -+...+|.++.-.|+.
T Consensus 321 a~~~~p~~~----~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 321 VLQMEPDNV----NALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHCTTCH----HHHHHHHHHHHHTTCH
T ss_pred HHHhCcccH----HHHHHHHHHHHHhcCH
Confidence 333322222 2334455555544443
No 84
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=85.25 E-value=29 Score=35.72 Aligned_cols=123 Identities=13% Similarity=0.018 Sum_probs=68.8
Q ss_pred HHHHHHHhhh--hhcccchhhHHhhhhhcc--CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHHH
Q 005098 234 KMSAAASLGM--ILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIR 305 (714)
Q Consensus 234 ~~~a~aslGl--I~~~~~~~~l~~l~~yL~--s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~ 305 (714)
...+...+|. ...|+.++++..+.+-+. ..+....+-++..+|.++... .+-+.++..+...+. ..+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3333333443 456899999888877664 334444556777777776532 233446666555443 2344556
Q ss_pred HHHHHHHHHHhccCCCH-hHHHHHHhhhc---CCCChhHHHHHHHHHHHhHhcCCCC
Q 005098 306 IGAIMGLGISYAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCN 358 (714)
Q Consensus 306 ~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~---d~~~~~e~~~~AalaLGLi~lGs~~ 358 (714)
..+...+|.+|.-.++. +..+.+...+. ... .......+-..+|.++...++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCc
Confidence 67788888888776663 34444433332 100 112223456677777766665
No 85
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.05 E-value=26 Score=42.68 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=10.7
Q ss_pred hHhhcCChhhHHHHHHHHhh
Q 005098 390 GLLYLGKQESVEATAEVSKT 409 (714)
Q Consensus 390 gLi~lG~~e~~~~ll~~L~~ 409 (714)
+|...|+.+.+..+.+.+..
T Consensus 348 al~~aGT~~a~~~i~~~i~~ 367 (1056)
T 1lsh_A 348 AVPAMATSEALLFLKRTLAS 367 (1056)
T ss_dssp HHHHHCSHHHHHHHHHHHHT
T ss_pred HhHhcCCHHHHHHHHHHHHc
Confidence 34455666655555555443
No 86
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.95 E-value=32 Score=34.08 Aligned_cols=302 Identities=9% Similarity=0.009 Sum_probs=152.5
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 321 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~- 321 (714)
....|+.++++..+.+.+....... .+.+.+|.++... .+-+.++..+...+....... .+...+|.+|.-.++
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNY--IAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFT--AARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHcCCh
Confidence 3456888999888887765433333 3455555554322 123457777776664221111 456677777766665
Q ss_pred HhHHHHHHhhhc-CCC--ChhHHH--------HHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHh
Q 005098 322 DQIRHKLSTILN-DAK--SPLDVI--------AFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLG 390 (714)
Q Consensus 322 ~~i~e~L~~~l~-d~~--~~~e~~--------~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lg 390 (714)
++..+.+...+. +++ ...+.. ...-+.+|.++...++.+.+...+..+.+..+. . ......+|..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~~~~~~~ 163 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW---D-AELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---c-hHHHHHHHHH
Confidence 356666666654 321 111210 001123366777777766555555554432221 1 2233445666
Q ss_pred HhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccc------------hhH
Q 005098 391 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQG------------PAV 458 (714)
Q Consensus 391 Li~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr------------~av 458 (714)
+...|+-+.+...++......... ......+|..|...|+.....+.+.-+.+...+ .... ...
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHHHHHH
Confidence 677777777777666554432111 123446677777888865444444333222111 1111 112
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHhc--CCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhhc-CCchHHHHHHHHHHH
Q 005098 459 LGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLG 534 (714)
Q Consensus 459 l~lalI~~~~~~~~~~~~~~l~~L~~~--~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~~-D~~~~Vr~~AiiAlG 534 (714)
.|..+...++. +.+.+.++..... .++.....+-..+|.++...++ .++++.+.+... +|+... +...+|
T Consensus 240 ~a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 313 (359)
T 3ieg_A 240 SAEELIRDGRY---TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN---ALKDRA 313 (359)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHH
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH---HHHHHH
Confidence 24445555555 6677777666542 2344444444556655554444 556667766643 554321 345555
Q ss_pred HHcCCCCch-HHHHHHHHHHhhhccChhHH
Q 005098 535 LIGSGTNNA-RIAGMLRNLSSYYYKDANLL 563 (714)
Q Consensus 535 lV~aGt~n~-rv~~~lr~l~~~~~~d~~~~ 563 (714)
.+....++. +-...+++..+....++..+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 555555542 33344444444333334333
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=84.57 E-value=69 Score=37.55 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred HHHHHHHhhccccCC-C------Cc---cc-cchhHHHHHHhhccc-----chh----h-hhHHHHHHHHHhcCCHHHHh
Q 005098 434 LKVQNLLGHCAQHHE-K------GE---AY-QGPAVLGIAMVAMAE-----ELG----L-EMAIRSLEHLLQYGEQNIRR 492 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~-~------~~---~v-rr~avl~lalI~~~~-----~~~----~-~~~~~~l~~L~~~~~~~vr~ 492 (714)
.+|..|+..+..+.. + ++ .. +.-|+.|+.-++..+ ++. . +.+...+..|+.+.++.||+
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 577888777762111 0 00 01 446888888887764 221 1 12445566677778899999
Q ss_pred hHHHHHhhhccCCC----------cHHH---HHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 005098 493 AVPLALGLLCISNP----------KVNV---MDTLSRLSHDTDSEVAMAAVISLGLIGSG 539 (714)
Q Consensus 493 g~~lALGl~~aGt~----------~~~a---i~~L~~l~~D~~~~Vr~~AiiAlGlV~aG 539 (714)
+++-++.-+.+... +++. ++.|-.+++..|..+|++|.-|++.+-.+
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 99999887765332 1222 56788889888999999999888887443
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=84.26 E-value=20 Score=35.04 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=64.3
Q ss_pred hhhcccchhhHHhhhhhcc--CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHHHHHHHHHHHHHh
Q 005098 243 MILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISY 316 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~--s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGl~y 316 (714)
....|+.+++...+.+.+. +.+....+-++..+|.++.... +.+.++..+...+. ..+.....-+...+|.+|
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 3456888888888877664 3344445567777777775432 33446666555432 133455566777888888
Q ss_pred ccCCCH-hHHHHHHhhhc---CCCChhHHHHHHHHHHHhHhcCCCC
Q 005098 317 AGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCN 358 (714)
Q Consensus 317 ~Gs~~~-~i~e~L~~~l~---d~~~~~e~~~~AalaLGLi~lGs~~ 358 (714)
.-.++- +..+.+...+. +.. .......+-..+|.++...++
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCc
Confidence 776653 34444443332 111 112223456677777765554
No 89
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.45 E-value=8.3 Score=36.93 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=70.0
Q ss_pred HHHHHHcCCChHHHHHHHHhcCChhhhHH----------------HhcccChHHHHHHHHHhcccCCCCCcHHHHHHHHH
Q 005098 7 IVAFHMKHNAEPEAVDLLMEVEDLDLLVE----------------HVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYM 70 (714)
Q Consensus 7 iv~~~~~~n~e~~AvdlllE~~~ld~i~~----------------~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~ 70 (714)
=|+.-++-|++..|+++|-++++-.+=++ .......-.-++||..+.. +.+=|+.+.+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg------~~e~L~kla~ 84 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG------DVNKLSKMQN 84 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHH
Confidence 35667888999999998887766332222 2222222222234444442 2355567778
Q ss_pred HHhccCCHHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHHHHhhhcccc
Q 005098 71 IYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 121 (714)
Q Consensus 71 i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~ 121 (714)
+....+++.-+..+++.+||.+...++|.++. +...|+..||..-..
T Consensus 85 iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~~~A~t~g~~ 131 (177)
T 3mkq_B 85 IAQTREDFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAYAVAKANGDE 131 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHHHHHHHTTCH
T ss_pred HHHHCccHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHHHHHHHcCcH
Confidence 88888999999999999999999999998763 345677777654444
No 90
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=81.11 E-value=38 Score=32.06 Aligned_cols=54 Identities=11% Similarity=-0.068 Sum_probs=23.2
Q ss_pred HHHHHHHhccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 005098 309 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 367 (714)
Q Consensus 309 ~lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~ 367 (714)
...+|.++...++ ++..+.+...+. +++ .. .+-+.+|.++...++.+.+...++
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~----~a~~~lg~~~~~~g~~~~A~~~~~ 63 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ-DP----EALYWLARTQLKLGLVNPALENGK 63 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CH----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555544444 234444444443 221 11 234455555555555443333333
No 91
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=80.99 E-value=23 Score=35.77 Aligned_cols=226 Identities=13% Similarity=0.072 Sum_probs=109.9
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 322 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~ 322 (714)
....|+.++++..+.+.+....... .+...+|.++.... +.+.++..+...+...... ..+...+|.+|...++.
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHM--EAWQYLGTTQAENE-QELLAISALRRCLELKPDN--QTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCc-CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCH
Confidence 4456899999988888776443333 34555555554322 3345777777665422111 23566777777776653
Q ss_pred -hHHHHHHhhhc-CCCChhHHH-----------HHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHH
Q 005098 323 -QIRHKLSTILN-DAKSPLDVI-----------AFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGL 389 (714)
Q Consensus 323 -~i~e~L~~~l~-d~~~~~e~~-----------~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~l 389 (714)
+..+.+...+. ++....... ......+|.++ ..++.+-+...+....+..+.. . .......+|.
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-~-~~~~~~~l~~ 225 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-I-DPDVQCGLGV 225 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-C-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-c-cHHHHHHHHH
Confidence 45555555443 221110000 00000233333 2223333333333333222221 0 1223344555
Q ss_pred hHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccc
Q 005098 390 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE 469 (714)
Q Consensus 390 gLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~ 469 (714)
.+...|+-+.+...++......... ......+|..|...|+.....+.+.-+.+...+ .......+|..+...++.
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCH
Confidence 6666677676666665544322111 123456778888899965444433333221111 344445556666666665
Q ss_pred hhhhhHHHHHHHHH
Q 005098 470 LGLEMAIRSLEHLL 483 (714)
Q Consensus 470 ~~~~~~~~~l~~L~ 483 (714)
+.+.+.++..+
T Consensus 302 ---~~A~~~~~~al 312 (368)
T 1fch_A 302 ---REAVEHFLEAL 312 (368)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 56666665544
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=79.70 E-value=14 Score=41.73 Aligned_cols=212 Identities=9% Similarity=0.009 Sum_probs=105.0
Q ss_pred CCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHH
Q 005098 283 RNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVA 362 (714)
Q Consensus 283 ~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~ 362 (714)
.|..+ ..+.|..-|-+++..+||||++||--+.-..+.. -|.. ...|.+++
T Consensus 170 eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G--------------------------AGR~--~~~N~DLA 220 (800)
T 3oc3_A 170 ENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG--------------------------GDIQ--IRVDSKLF 220 (800)
T ss_dssp CSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC------------------------------CC--CCCCTTHH
T ss_pred CCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC--------------------------Ccee--ccccHHHH
Confidence 34455 6678888888899999999999987544322210 0110 22233445
Q ss_pred HHHHHHHhhcC-----ccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHh---hchhhhhhhhHHHHHHHHhhcCCC--
Q 005098 363 QAIIFALMDRS-----ESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSK---TFNEKIRKYCDMTLLSCAYAGTGN-- 432 (714)
Q Consensus 363 e~Ll~~L~~~~-----~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~---~~~~~~~r~~~~~~~glayaGtGn-- 432 (714)
-.++.++.-.. ..+.-.|++..+|-++|-+ .--.+.. .++..|. ..+.--.|+|+. +|+-|. .+
T Consensus 221 vRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~-~IL~qLV~~l~~~~WEVRHGGL--LGLKYL--~DLL 294 (800)
T 3oc3_A 221 SKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN-DIIEQLVGFLDSGDWQVQFSGL--IALGYL--KEFV 294 (800)
T ss_dssp HHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC-CHHHHHTTGGGCSCHHHHHHHH--HHHHHT--GGGC
T ss_pred HHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChhH-HHHHHHHhhcCCCCeeehhhhH--HHHHHH--HHHH
Confidence 55555543211 1122345666666666555 3322222 2222222 122334466654 456676 22
Q ss_pred ---HHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHH----HhcCCHHHHhhH-HHHHhhhc--
Q 005098 433 ---VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL----LQYGEQNIRRAV-PLALGLLC-- 502 (714)
Q Consensus 433 ---~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L----~~~~~~~vr~g~-~lALGl~~-- 502 (714)
..++..++.-+.++ + +|||.+|+-++-=|. .+ +.+..+++.+ .+..|-..-.|. .--|+-+|
T Consensus 295 ~~Ld~Vv~aVL~GL~D~-D--DDVRAVAAetLiPIA--~p---~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 295 EDKDGLCRKLVSLLSSP-D--EDIKLLSAELLCHFP--IT---DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp CCHHHHHHHHHHHTTCS-S--HHHHHHHHHHHTTSC--CS---STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-c--cHHHHHHHHHhhhhc--ch---hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcC
Confidence 22333444444332 3 378877666655555 33 3344444332 222221111111 11111111
Q ss_pred --cCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 005098 503 --ISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 503 --aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~ 537 (714)
....++..+..|.++++.+-..||.+++-++--+.
T Consensus 367 p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 367 NPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred CcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 11233467777889999999999998777665444
No 93
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=79.19 E-value=52 Score=32.50 Aligned_cols=264 Identities=9% Similarity=0.011 Sum_probs=135.8
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCC---hHHHHHHH----------
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED---ACIRIGAI---------- 309 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~---~~v~~gA~---------- 309 (714)
....|+.++++..+.+.+....... .+...+|.++... .+-+.++..+...+.... .....-..
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFT--AARLQRGHLLLKQ-GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHH-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH
Confidence 3456889999988887765333333 4455555555322 123457777777776433 22222111
Q ss_pred HHHHHHhccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 005098 310 MGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 387 (714)
Q Consensus 310 lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l 387 (714)
..+|.++...++ ++..+.+...+. ++. .. .+-..+|.++.-.++.+-+...+....+..+. . ......+
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~~~l 194 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVW-DA----ELRELRAECFIKEGEPRKAISDLKAASKLKSD---N-TEAFYKI 194 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---C-HHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C-HHHHHHH
Confidence 233566666555 355566655554 321 22 34567777787777776666565554433221 1 2233445
Q ss_pred HHhHhhcCChhhHHHHHHHHhhc-hhhhh---h------hhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCcccc--c
Q 005098 388 GLGLLYLGKQESVEATAEVSKTF-NEKIR---K------YCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQ--G 455 (714)
Q Consensus 388 ~lgLi~lG~~e~~~~ll~~L~~~-~~~~~---r------~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vr--r 455 (714)
|..+...|+.+.+...++..... ++... . ....+..|..|...|+.....+.+.-+.+...++.... .
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 66666677777766666544432 21111 1 11233457778888986544443333322211101121 1
Q ss_pred hhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhhc-CCch
Q 005098 456 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDS 523 (714)
Q Consensus 456 ~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~~-D~~~ 523 (714)
...+|..+...++. +.+.+.++........+.. +-+.+|.++...++ .+|++.+.+... +|++
T Consensus 275 ~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 275 KERICHCFSKDEKP---VEAIRICSEVLQMEPDNVN--ALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHccCH---HHHHHHHHHHHHhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 23455666666775 7777777777654321222 22333444433343 466667766643 4543
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=79.14 E-value=49 Score=32.16 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHH-HHHhhhccChhHHHHHHHHHhhhh
Q 005098 512 DTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLR-NLSSYYYKDANLLFCVRIAQGLVH 574 (714)
Q Consensus 512 ~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~rv~~~lr-~l~~~~~~d~~~~~~~~lA~Gll~ 574 (714)
+.|..+++|.|.-||-.|+-+|+-+ -+-||++....+ .+..+--....+.+-++=++|-+-
T Consensus 184 prL~aLL~D~deiVRaSaVEtL~~l--A~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHH--HTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhHHHHHHHHHH--HHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777665 345555543332 233321122235566666665443
No 95
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=78.66 E-value=25 Score=35.78 Aligned_cols=227 Identities=14% Similarity=0.091 Sum_probs=107.6
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 322 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~ 322 (714)
....|+.+++...+.+.+...... .-+...+|.++.... +.+.++..+...+...... ..+...+|.+|...++.
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGD--AEAWQFLGITQAENE-NEQAAIVALQRCLELQPNN--LKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccccH
Confidence 345678888888888776533333 345566666664332 3445777777665422111 23566777777766653
Q ss_pred -hHHHHHHhhhc-CCCChhHH-----HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcC
Q 005098 323 -QIRHKLSTILN-DAKSPLDV-----IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLG 395 (714)
Q Consensus 323 -~i~e~L~~~l~-d~~~~~e~-----~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG 395 (714)
+..+.+...+. ++...... .......+|.++...++.+-+...+.......+.. .+ ......+|..+...|
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-ID-PDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-CC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-cC-HHHHHHHHHHHHHCC
Confidence 45555544443 21100000 01122345667766666555555554444332221 01 223344566666667
Q ss_pred ChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhH
Q 005098 396 KQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMA 475 (714)
Q Consensus 396 ~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~ 475 (714)
+-+++...++......... ......+|.+|...|+.....+.+.-+.+...+ .......+|..+...|+. +.+
T Consensus 228 ~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~---~~A 300 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--FIRSRYNLGISCINLGAY---REA 300 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCC---HHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCCH---HHH
Confidence 7776666655443322111 123345677778888854433333332221111 333344555555555665 555
Q ss_pred HHHHHHHH
Q 005098 476 IRSLEHLL 483 (714)
Q Consensus 476 ~~~l~~L~ 483 (714)
.+.++..+
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 96
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=78.38 E-value=61 Score=32.82 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=65.3
Q ss_pred hhhcccchhhHHhhhhhcc--CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHHHHHHHHHHHHHh
Q 005098 243 MILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISY 316 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~--s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGl~y 316 (714)
....|+.+++...+.+-+. ..+....+-++..+|.++.... +-+.++..+...+. ..+......+...+|.+|
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3456889999888877654 3344444567777787775432 33446665554432 234555567788888888
Q ss_pred ccCCCH-hHHHHHHhhhc---CCCChhHHHHHHHHHHHhHhcCCCC
Q 005098 317 AGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCN 358 (714)
Q Consensus 317 ~Gs~~~-~i~e~L~~~l~---d~~~~~e~~~~AalaLGLi~lGs~~ 358 (714)
.-.++. +..+.+...+. +.. .......+-..+|.++...++
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCC
Confidence 776654 34444433332 110 112223466677777766655
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=78.17 E-value=50 Score=31.78 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=29.3
Q ss_pred hHHHHHHHhccC-CChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcC
Q 005098 288 PALALLSEYVGR-EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVG 355 (714)
Q Consensus 288 ~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lG 355 (714)
.++..+...+.. ++.....-+.+.+|.+|...++- +..+.+...+. +++.... ..+-+.+|.++..
T Consensus 33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~lg~~~~~ 101 (261)
T 3qky_A 33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--PQAEYERAMCYYK 101 (261)
T ss_dssp HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--HHHHHHHHHHHHH
Confidence 355555555542 22223344556666666555542 34444444443 2211111 1345555665544
No 98
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=77.74 E-value=42 Score=30.65 Aligned_cols=155 Identities=12% Similarity=0.034 Sum_probs=72.6
Q ss_pred hhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccC-C
Q 005098 242 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT-Q 320 (714)
Q Consensus 242 GlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs-~ 320 (714)
.....|+.++++..+.+.+...... ..+...+|.++... .+.+.++..+...+...... ..+...+|.++... +
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSDPKN--ELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDS--AEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcC
Confidence 3445678888887777665432222 23444555554322 12344666665554321111 12345566666665 5
Q ss_pred C-HhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhh
Q 005098 321 N-DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 399 (714)
Q Consensus 321 ~-~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~ 399 (714)
+ ++..+.+...+..+...... .+-..+|.++...++.+.+...+....+..+. . ......+|..+...|+-++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPY--IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---F-PPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C-HHHHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-chHHHHHHHHHHHcCCHHH
Confidence 4 34445554444411111111 34456666666666665544444433322111 1 1222334444555566555
Q ss_pred HHHHHHHH
Q 005098 400 VEATAEVS 407 (714)
Q Consensus 400 ~~~ll~~L 407 (714)
+...++..
T Consensus 166 A~~~~~~~ 173 (225)
T 2vq2_A 166 ADYYFKKY 173 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 99
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=77.31 E-value=76 Score=33.39 Aligned_cols=149 Identities=9% Similarity=0.009 Sum_probs=72.2
Q ss_pred hhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-H
Q 005098 244 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 322 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~ 322 (714)
...|+.++++..+.+.+..... ..+...+|.++....+ -+.++..+...+....... .+...+|.+|...++ +
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRND-STEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSC-CTTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTT
T ss_pred HHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCC-HHHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHH
Confidence 3457778887777766543333 4455555555533221 1225555555554321111 134455555555443 3
Q ss_pred hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 323 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 323 ~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
+..+.+...+. ++. .. .+-..+|.++.-.++.+.+...+....+..+.. ......+|..+...|+-+.+.
T Consensus 322 ~A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NI----FPYIQLACLAYRENKFDDCETLFSEAKRKFPEA----PEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHHHHHHHHTCSS-CS----HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhChh-hH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC----HHHHHHHHHHHHHCCCHHHHH
Confidence 45555555443 221 11 245566777777776655555554443322111 112333455555566666555
Q ss_pred HHHHHH
Q 005098 402 ATAEVS 407 (714)
Q Consensus 402 ~ll~~L 407 (714)
..++..
T Consensus 393 ~~~~~a 398 (514)
T 2gw1_A 393 KQYDLA 398 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 100
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=76.96 E-value=69 Score=32.69 Aligned_cols=278 Identities=11% Similarity=0.008 Sum_probs=131.4
Q ss_pred hcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-Hh
Q 005098 245 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQ 323 (714)
Q Consensus 245 ~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~ 323 (714)
..++.+++...+...+........ +...+|.++.... +.+.++..+...+....... .+...+|.++...++ ++
T Consensus 45 ~~~~~~~a~~~~~~a~~~~p~~~~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQNPLLAE--AYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFI--DGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHSCSSH
T ss_pred HcCCHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHCC-CHHHHHHHHHHHHHcCcchH--HHHHHHHHHHHHcCCHHH
Confidence 356777777666655543333333 4444444443221 23446666666554221111 234445555544333 34
Q ss_pred HHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHH
Q 005098 324 IRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 402 (714)
Q Consensus 324 i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ 402 (714)
..+.+...+. +++. . .+-..+|.++...++.+.+...+....+..+. .......+|..+...|+-+.+..
T Consensus 120 A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 120 AVQAYVSALQYNPDL-Y----CVRSDLGNLLKALGRLEEAKACYLKAIETQPN----FAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HHHHHHHHHHHCTTC-T----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCc-H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555554443 3321 1 24456777777777766555555544432211 12233344555555566556555
Q ss_pred HHHHHhhchhhhhhhhHHHHHHHHhhcCCCH-HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHH
Q 005098 403 TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV-LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 481 (714)
Q Consensus 403 ll~~L~~~~~~~~r~~~~~~~glayaGtGn~-~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~ 481 (714)
.++.....+... ..+...+|..|...|+. .+++.+.+....+.+ .......+|..+...++. +.+.+.++.
T Consensus 191 ~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~---~~A~~~~~~ 262 (388)
T 1w3b_A 191 HFEKAVTLDPNF--LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLI---DLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHCTTC--HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH---HHHHHHHHH
T ss_pred HHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCH---HHHHHHHHH
Confidence 555443322111 12334566777777774 333333333222211 233334455555555665 667777776
Q ss_pred HHhcC--CHHHHhhHHHHHhhhccCCC-cHHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCch-HHHHHHHH
Q 005098 482 LLQYG--EQNIRRAVPLALGLLCISNP-KVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRN 551 (714)
Q Consensus 482 L~~~~--~~~vr~g~~lALGl~~aGt~-~~~ai~~L~~l~~-D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~ 551 (714)
..... ++.+. ..+|..+...+ ..++++.+.+... +|++. .+...+|.+....++. +-...+++
T Consensus 263 al~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 263 AIELQPHFPDAY----CNLANALKEKGSVAEAEDCYNTALRLCPTHA---DSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHTCSSCHHHH----HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhhCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65432 23332 33343333333 3456666666542 44332 1234556666555542 23344444
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=76.14 E-value=51 Score=31.74 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=74.4
Q ss_pred hhhhhcccchhhHHhhhhhccC-CCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHHhcc
Q 005098 241 LGMILLWDVDSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAG 318 (714)
Q Consensus 241 lGlI~~~~~~~~l~~l~~yL~s-~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~G 318 (714)
......|+.+++...+.+.+.. +++....-+.+.+|.++... .+-+.++..+...+.. ++.....-+.+.+|.++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 3445678999999998888763 22333456777788777543 2345578877777652 2222334677888888865
Q ss_pred --------CCC-HhHHHHHHhhhc-CCCChhHHHHHHH--------------HHHHhHhcCCCCHHHHHHHHHHHh
Q 005098 319 --------TQN-DQIRHKLSTILN-DAKSPLDVIAFSA--------------ISLGLIYVGSCNEEVAQAIIFALM 370 (714)
Q Consensus 319 --------s~~-~~i~e~L~~~l~-d~~~~~e~~~~Aa--------------laLGLi~lGs~~~~~~e~Ll~~L~ 370 (714)
.++ ++..+.+...+. +++.. .. ..+. +.+|.++...++-+.+...++.+.
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~-~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LV-DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHCcCch-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 443 345555555553 22211 11 0122 677777777777655444444443
No 102
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=74.93 E-value=65 Score=31.40 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=43.6
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 322 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~ 322 (714)
....|+.+++...+.+.+....... -+...+|.++... .+.+.+...+...+...... ..+...+|.+|...++.
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPERE--EAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKD--IAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHHHcCCH
Confidence 3456788888887777665333333 3344445444322 12344666666655422111 23455566666655553
Q ss_pred -hHHHHHHhhh
Q 005098 323 -QIRHKLSTIL 332 (714)
Q Consensus 323 -~i~e~L~~~l 332 (714)
+..+.+...+
T Consensus 106 ~~A~~~~~~~~ 116 (327)
T 3cv0_A 106 NAALASLRAWL 116 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4455554444
No 103
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=74.42 E-value=59 Score=30.67 Aligned_cols=179 Identities=15% Similarity=0.080 Sum_probs=91.4
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHH
Q 005098 345 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 424 (714)
Q Consensus 345 AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~g 424 (714)
+-+.+|.++...++.+-+...++......+. . ......+|..+...|+-+++...++.....+.... .+-..+|
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg 80 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ---D-PEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLS 80 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHH
Confidence 4567788888888766555555544432221 2 22334556667777887777766665444322111 1233455
Q ss_pred HHhhcC-----------CCHHH-HHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhc-CCHHHH
Q 005098 425 CAYAGT-----------GNVLK-VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY-GEQNIR 491 (714)
Q Consensus 425 layaGt-----------Gn~~~-i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~-~~~~vr 491 (714)
.+|... |+... ++.+-+.+..+.+ +......+|..+...|+. +.+.+.++..+.- .++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 154 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR---YAPLHLQRGLVYALLGER---DKAEASLKQALALEDTPEIR 154 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcccchHHH
Confidence 666666 66433 3333232222211 344445566666666776 6666666654432 344444
Q ss_pred hhHHHHHhhhccCCC-cHHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc
Q 005098 492 RAVPLALGLLCISNP-KVNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 492 ~g~~lALGl~~aGt~-~~~ai~~L~~l~-~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
. .+|.++...+ ..+++..+.+.+ .+|++.. +...+|.+....++
T Consensus 155 ~----~la~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 155 S----ALAELYLSMGRLDEALAQYAKALEQAPKDLD---LRVRYASALLLKGK 200 (217)
T ss_dssp H----HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHTC---
T ss_pred H----HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHccC
Confidence 3 3333333333 345666676654 3565432 33556666665554
No 104
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=73.39 E-value=86 Score=32.10 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=109.6
Q ss_pred hcccchhhHHhhhhhcc----CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCC-hHHHHHHHHHHHHH
Q 005098 245 LLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----RED-ACIRIGAIMGLGIS 315 (714)
Q Consensus 245 ~~~~~~~~l~~l~~yL~----s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~-~~v~~gA~lGLGl~ 315 (714)
..|+.++|+..+.+-+. .+++...+-+...+|.++.... +-+.++..+...+. .++ ......+...+|.+
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 35677777776665543 2445567788888888886432 34556666655543 222 44556788899999
Q ss_pred hccCCCH-hHHHHHHhhhc---CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-Ccccc-CchhHhHHHHHH
Q 005098 316 YAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESEL-GEPLTRLIPLGL 389 (714)
Q Consensus 316 y~Gs~~~-~i~e~L~~~l~---d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~-~~~~l-~~~~~r~a~l~l 389 (714)
|...++- +..+.+...+. +.. .......+-..+|.++...++.+-+...+....+- ..... .........+|.
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 9887764 45554444432 111 12223356778999999888876554444433221 00110 111222333444
Q ss_pred hHhhcCChhhHHHHHHHHhh----chhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccc
Q 005098 390 GLLYLGKQESVEATAEVSKT----FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ 445 (714)
Q Consensus 390 gLi~lG~~e~~~~ll~~L~~----~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~ 445 (714)
.+...|+-+++...++.... .+++..... ...+|..|...|+...+++-+.++..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555666666655543322 223322222 44578888888886666666666553
No 105
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=72.06 E-value=73 Score=30.73 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=90.9
Q ss_pred hhhcccchhhHHhhhhhcc------CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC------CChHHHHHHHH
Q 005098 243 MILLWDVDSGLAQIDKYFH------STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------EDACIRIGAIM 310 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~------s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~~~~v~~gA~l 310 (714)
....|+.++++..+.+.+. ..+.....-+...+|.++.... +-+.+...+...+.. ++......+..
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3446889999888877664 1244556667777777765432 334566666655532 33345566778
Q ss_pred HHHHHhccCCCH-hHHHHHHhhhc------CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc---C-ccccCc
Q 005098 311 GLGISYAGTQND-QIRHKLSTILN------DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR---S-ESELGE 379 (714)
Q Consensus 311 GLGl~y~Gs~~~-~i~e~L~~~l~------d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~---~-~~~l~~ 379 (714)
.+|.+|...++. +..+.+...+. ..... ....+-..+|.++...++.+.+...++...+. . ..+...
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP--DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 888888877764 44444444332 01111 22356778899998888876555444433321 0 010011
Q ss_pred hhHhHHHHHHhHhhcCChhhHHHHHHHHh
Q 005098 380 PLTRLIPLGLGLLYLGKQESVEATAEVSK 408 (714)
Q Consensus 380 ~~~r~a~l~lgLi~lG~~e~~~~ll~~L~ 408 (714)
.......+|..+...|+-+++...++...
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12223344555666677777666655443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=71.19 E-value=85 Score=31.13 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=73.4
Q ss_pred HHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHh
Q 005098 385 IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV 464 (714)
Q Consensus 385 a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI 464 (714)
..+|..+...|+.+++...++.....+... ..+.+.+|.+|...|+.......+.-+.....+ ........++.+.
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~~~~~~l~ 196 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--TRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hHHHHHHHHHHHH
Confidence 344555555666666666555443322111 122345566677777755555554444322111 2222333333344
Q ss_pred hcccchhhhhHHHHHHHHHhc--CCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhh-cCCch---HHHHHHHHHHHHHcC
Q 005098 465 AMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS-HDTDS---EVAMAAVISLGLIGS 538 (714)
Q Consensus 465 ~~~~~~~~~~~~~~l~~L~~~--~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~-~D~~~---~Vr~~AiiAlGlV~a 538 (714)
..++. +.+.+.++..+.. .++..+...+. .+...| ...+|++.+.+.+ .||+. .++.+ ++.-+-..
T Consensus 197 ~~~~~---~~a~~~l~~al~~~P~~~~~~~~la~--~l~~~g-~~~~A~~~l~~~l~~~p~~~~~~a~~~--l~~~~~~~ 268 (287)
T 3qou_A 197 XQAAD---TPEIQQLQQQVAENPEDAALATQLAL--QLHQVG-RNEEALELLFGHLRXDLTAADGQTRXT--FQEILAAL 268 (287)
T ss_dssp HHHTS---CHHHHHHHHHHHHCTTCHHHHHHHHH--HHHHTT-CHHHHHHHHHHHHHHCTTGGGGHHHHH--HHHHHHHH
T ss_pred hhccc---CccHHHHHHHHhcCCccHHHHHHHHH--HHHHcc-cHHHHHHHHHHHHhcccccccchHHHH--HHHHHHHc
Confidence 33433 3344445444432 23344433222 222222 3456677776664 35543 33332 22223334
Q ss_pred CCCchHHHHHHHHHHhh
Q 005098 539 GTNNARIAGMLRNLSSY 555 (714)
Q Consensus 539 Gt~n~rv~~~lr~l~~~ 555 (714)
|..++.+..+.|.|++.
T Consensus 269 g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 269 GTGDALASXYRRQLYAL 285 (287)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 66677777777777654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=70.41 E-value=50 Score=32.91 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCCCH-hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 005098 307 GAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 367 (714)
Q Consensus 307 gA~lGLGl~y~Gs~~~-~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~ 367 (714)
.+.+.+|..+...++. +..+.+...+. +++ +. .+-+.||.+++..++.+.+...++
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~----~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NG----EIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CH----HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-ch----hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666666555543 34444444443 332 11 255666666666666555554444
No 108
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=70.09 E-value=1e+02 Score=31.54 Aligned_cols=199 Identities=8% Similarity=-0.029 Sum_probs=110.8
Q ss_pred HHHHHhhhhh--cccchhhHHhhhhhcc----CCC-chhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHH
Q 005098 236 SAAASLGMIL--LWDVDSGLAQIDKYFH----STD-NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACI 304 (714)
Q Consensus 236 ~a~aslGlI~--~~~~~~~l~~l~~yL~----s~~-~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v 304 (714)
.+...+|.++ .|+.++|+..+.+-+. ..+ ....+.++..+|.++.... +-+.++..+...+. .++...
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK-QYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHcCChHH
Confidence 3344455544 5788888776655442 222 4556677888888886442 34557766665553 244556
Q ss_pred HHHHHHHHHHHhccCCCH-hHHHHHHhhhc---CCCC-hhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCc
Q 005098 305 RIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKS-PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 379 (714)
Q Consensus 305 ~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~---d~~~-~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~ 379 (714)
...+...||.+|...++- +..+.+...+. .... ... ..+-..+|.++...++.+.+...++...+.... ..+
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~ 299 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL--PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK-AGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCC
Confidence 667888999999888764 45555554443 1111 212 257788999998888876555554433221111 122
Q ss_pred hhHhHHHHHHhHhhcCChh--hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHH
Q 005098 380 PLTRLIPLGLGLLYLGKQE--SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN 438 (714)
Q Consensus 380 ~~~r~a~l~lgLi~lG~~e--~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~ 438 (714)
+........+|.++...++ ..+..++.+...+...........+|..|...|+.....+
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2222222246666665543 3444444444433333333344567888889998654433
No 109
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=69.62 E-value=75 Score=29.85 Aligned_cols=152 Identities=9% Similarity=-0.004 Sum_probs=67.4
Q ss_pred hhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-H
Q 005098 244 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 322 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~ 322 (714)
...|+.++++..+.+.+....... -+...+|.++... .+-+.+...+...+...... ..+...+|.+|...++ +
T Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEIDPSSA--DAHAALAVVFQTE-MEPKLADEEYRKALASDSRN--ARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHCTTCH--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHHhHHH
Confidence 345777777777766654322222 3444444444322 12344666665554321111 1234455555555544 3
Q ss_pred hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHH
Q 005098 323 QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 402 (714)
Q Consensus 323 ~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ 402 (714)
+..+.+...+..+...... .+-..+|.++...++.+.+...+.......+ .. ......+|..+...|+-+++..
T Consensus 123 ~A~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERS--RVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQ-PSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---cc-HHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444311011111 3445566666666665444444443332211 11 1122333444444455555554
Q ss_pred HHHH
Q 005098 403 TAEV 406 (714)
Q Consensus 403 ll~~ 406 (714)
.++.
T Consensus 197 ~~~~ 200 (252)
T 2ho1_A 197 YYDL 200 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 110
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.06 E-value=29 Score=39.75 Aligned_cols=44 Identities=9% Similarity=-0.039 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhhcchHH
Q 005098 62 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLL 105 (714)
Q Consensus 62 ~~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~ 105 (714)
...-+.+-+.+++.+++..|.+|..+++|.+.+..++...+++.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHH
Confidence 35566666777777777777777777777777777766655443
No 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=68.78 E-value=1.2e+02 Score=32.05 Aligned_cols=249 Identities=13% Similarity=0.047 Sum_probs=131.9
Q ss_pred cchhhHHhhhhhccCCCch-----hHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-
Q 005098 248 DVDSGLAQIDKYFHSTDNH-----VIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 321 (714)
Q Consensus 248 ~~~~~l~~l~~yL~s~~~~-----~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~- 321 (714)
+.+++...+.+.+...... ..+-++..+|.++.... +.+.++..+...+..... ..+...+|.+|...++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT---PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC---HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhcCH
Confidence 5666777666665532222 12446777777765432 345577777766653222 3566778888877765
Q ss_pred HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhH
Q 005098 322 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 400 (714)
Q Consensus 322 ~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~ 400 (714)
++..+.+...+. ++. .. .+-..+|.++...++.+.+...+.......+.. ......+|..+...|+-+.+
T Consensus 293 ~~A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPE-YP----PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccCCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH
Confidence 456666666554 332 22 245677888888887666555555444322221 22334456667777887777
Q ss_pred HHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHH----hhccccCCCCccccchhHHHHHHhhc----------
Q 005098 401 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLL----GHCAQHHEKGEAYQGPAVLGIAMVAM---------- 466 (714)
Q Consensus 401 ~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL----~~~~~~~~~~~~vrr~avl~lalI~~---------- 466 (714)
...++......... ......+|..|...|+.....+.+ ....+.... ..........|.+..
T Consensus 364 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 364 EAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI--HVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC--SSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh--HHHHHHHHHHHHHHHHHhhccchhh
Confidence 77766554432111 112345678888899955443333 332221110 122223344444443
Q ss_pred --ccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhh
Q 005098 467 --AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS 518 (714)
Q Consensus 467 --~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~ 518 (714)
++. +.+.+.++...+....+. .+-..+|.++.-.++ .+|++.+.+..
T Consensus 440 ~~~~~---~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 440 DEEKF---NAAIKLLTKACELDPRSE--QAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CHHHH---HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhHH---HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 443 667777776655332122 223444544444443 45666666654
No 112
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=67.58 E-value=1.1e+02 Score=30.89 Aligned_cols=287 Identities=17% Similarity=0.054 Sum_probs=136.9
Q ss_pred hhhHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc---CCCChhHHHHHHHHHHHhHhcCCCCH
Q 005098 286 CDPALALLSEYVG--REDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNE 359 (714)
Q Consensus 286 ~d~~~~lL~~~L~--~~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~---d~~~~~e~~~~AalaLGLi~lGs~~~ 359 (714)
-+.++..+...+. ..+......+...+|.+|...++- +..+.+...+. ... .......+-..+|.++.-.++.
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHcCCH
Confidence 3457777766654 334455566788888888877663 44444433321 111 1122235667788888877776
Q ss_pred HHHHHHHHHHhhcCccccCch-hHhHHHHHHhHhhc--CC--------------------hhhHHHHHHH----Hhhchh
Q 005098 360 EVAQAIIFALMDRSESELGEP-LTRLIPLGLGLLYL--GK--------------------QESVEATAEV----SKTFNE 412 (714)
Q Consensus 360 ~~~e~Ll~~L~~~~~~~l~~~-~~r~a~l~lgLi~l--G~--------------------~e~~~~ll~~----L~~~~~ 412 (714)
+.+...++...+..+.. .++ ....+-..+|.++. |. -+.+....+. ....++
T Consensus 104 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 182 (406)
T 3sf4_A 104 DEAIVCCQRHLDISREL-NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55444443332211111 121 11112224444444 44 2333322221 122222
Q ss_pred hhhhhhHHHHHHHHhhcCCCHHHHH----HHHhhccccCCCCcccc--chhHHHHHHhhcccchhhhhHHHHHHHHH---
Q 005098 413 KIRKYCDMTLLSCAYAGTGNVLKVQ----NLLGHCAQHHEKGEAYQ--GPAVLGIAMVAMAEELGLEMAIRSLEHLL--- 483 (714)
Q Consensus 413 ~~~r~~~~~~~glayaGtGn~~~i~----~LL~~~~~~~~~~~~vr--r~avl~lalI~~~~~~~~~~~~~~l~~L~--- 483 (714)
+.........+|..|...|+..... +.+.......+. ... ....+|..+...++. +.+.+.++...
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERRAYSNLGNAYIFLGEF---ETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHH
Confidence 3333334556788888888854333 334443322111 111 233344444555555 55555555433
Q ss_pred -hcCCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhhc----CCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHhhh
Q 005098 484 -QYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLSH----DTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYY 556 (714)
Q Consensus 484 -~~~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~~----D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~~~~ 556 (714)
...++....-+...+|.++...++ .+|++.+.+... ..+......+...+|.+....++. +....+++-.+..
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334555556666777777766665 445555554431 223333344556667666655542 2334444433322
Q ss_pred --ccChhHHHHHHHHHhhhhcCCCc
Q 005098 557 --YKDANLLFCVRIAQGLVHMGKGL 579 (714)
Q Consensus 557 --~~d~~~~~~~~lA~Gll~~G~g~ 579 (714)
..++....-+...+|-++.-.|.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhH
Confidence 12344444455555555544443
No 113
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=66.75 E-value=76 Score=28.83 Aligned_cols=9 Identities=22% Similarity=0.243 Sum_probs=3.8
Q ss_pred HHHhhcCCC
Q 005098 424 SCAYAGTGN 432 (714)
Q Consensus 424 glayaGtGn 432 (714)
|..|...|+
T Consensus 120 ~~~~~~~~~ 128 (225)
T 2vq2_A 120 GICSAKQGQ 128 (225)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 334444444
No 114
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=66.14 E-value=1.1e+02 Score=30.61 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc-CCCChhHHH
Q 005098 265 NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVI 342 (714)
Q Consensus 265 ~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~-d~~~~~e~~ 342 (714)
++...-+++.+|..+.... +-+.++..+...+...... ..+...+|.+|...++. +..+.+...+. ++. ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~--- 133 (365)
T 4eqf_A 61 PFKDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGD--AEAWQFLGITQAENENEQAAIVALQRCLELQPN-NL--- 133 (365)
T ss_dssp TTTTCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH---
T ss_pred cccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CH---
Confidence 3334445555555543221 2344666666555421111 23556666666655542 34444444443 221 11
Q ss_pred HHHHHHHHhHhcCCCCHHHHHHHHH
Q 005098 343 AFSAISLGLIYVGSCNEEVAQAIIF 367 (714)
Q Consensus 343 ~~AalaLGLi~lGs~~~~~~e~Ll~ 367 (714)
.+-..+|.++.-.++.+-+...+.
T Consensus 134 -~~~~~l~~~~~~~g~~~~A~~~~~ 157 (365)
T 4eqf_A 134 -KALMALAVSYTNTSHQQDACEALK 157 (365)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHccccHHHHHHHHH
Confidence 234455555555555444443333
No 115
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=65.21 E-value=87 Score=28.97 Aligned_cols=13 Identities=0% Similarity=-0.703 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccC
Q 005098 307 GAIMGLGISYAGT 319 (714)
Q Consensus 307 gA~lGLGl~y~Gs 319 (714)
.+.+.+|..+...
T Consensus 24 ~~~~~~a~~~~~~ 36 (243)
T 2q7f_A 24 MTGGQQMGRGSEF 36 (243)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 116
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=64.66 E-value=1.5e+02 Score=31.43 Aligned_cols=159 Identities=7% Similarity=-0.089 Sum_probs=82.6
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHH
Q 005098 344 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 423 (714)
Q Consensus 344 ~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~ 423 (714)
.+-..+|.++...++.+.+...++...+.. .+ ......+|..+...|+-+.+...++......... ......+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 316 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLH----PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHH
Confidence 356677888877777665555555544321 11 2233344555555566666666555443322111 1224456
Q ss_pred HHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcC--CHHHHhhHHHHHhhh
Q 005098 424 SCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLL 501 (714)
Q Consensus 424 glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~--~~~vr~g~~lALGl~ 501 (714)
|..|...|+.....+.+.-+.+...+ .......+|..+...|+. +.+.+.+....... ++.+. ..+|.+
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~----~~l~~~ 387 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPE--NVYPYIQLACLLYKQGKF---TESEAFFNETKLKFPTLPEVP----TFFAEI 387 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CSHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCTHHH----HHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCChHHH----HHHHHH
Confidence 77888888865444443333222111 334444556666666665 67777777665542 23333 333444
Q ss_pred ccCCCc-HHHHHHHHHhh
Q 005098 502 CISNPK-VNVMDTLSRLS 518 (714)
Q Consensus 502 ~aGt~~-~~ai~~L~~l~ 518 (714)
+...++ .++++.+.+..
T Consensus 388 ~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444444 45566665543
No 117
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=63.63 E-value=98 Score=29.00 Aligned_cols=13 Identities=8% Similarity=0.358 Sum_probs=5.3
Q ss_pred HHHhHhcCCCCHH
Q 005098 348 SLGLIYVGSCNEE 360 (714)
Q Consensus 348 aLGLi~lGs~~~~ 360 (714)
.+|.++...++.+
T Consensus 76 ~la~~~~~~~~~~ 88 (252)
T 2ho1_A 76 ALAVVFQTEMEPK 88 (252)
T ss_dssp HHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHH
Confidence 3444444444433
No 118
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=63.25 E-value=1.4e+02 Score=30.50 Aligned_cols=94 Identities=16% Similarity=0.020 Sum_probs=44.8
Q ss_pred CCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhh----cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHhhh--c
Q 005098 486 GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS----HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYY--Y 557 (714)
Q Consensus 486 ~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~----~D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~~~~--~ 557 (714)
.++.....+-..+|.++...++ .++++.+.+.. ...+......+...+|.+....++. +-...+++..... .
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 3444444455566666666555 44555554432 1222223334455666666555542 2333444333222 1
Q ss_pred cChhHHHHHHHHHhhhhcCCCc
Q 005098 558 KDANLLFCVRIAQGLVHMGKGL 579 (714)
Q Consensus 558 ~d~~~~~~~~lA~Gll~~G~g~ 579 (714)
.++.....+...+|.++...|.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHHhcc
Confidence 2333444455566666666555
No 119
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.15 E-value=33 Score=39.23 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHHHHhhh
Q 005098 63 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARH 117 (714)
Q Consensus 63 ~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq 117 (714)
+-++.+.++..+.+++..|..++++++|++...+++.++. +...|+.|||+
T Consensus 724 ~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~----~~~~A~~lA~~ 774 (814)
T 3mkq_A 724 EGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQ----RFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcC----ChHHHHHHHHH
Confidence 4455556667777788888888888888888888887753 34455666655
No 120
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=60.06 E-value=33 Score=43.18 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcC--------------------ChhhhHHHhcccChHHHHHHHHHhcccCCCCCcHH
Q 005098 4 VQEIVAFHMKHNAEPEAVDLLMEVE--------------------DLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDML 63 (714)
Q Consensus 4 v~~iv~~~~~~n~e~~AvdlllE~~--------------------~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~ 63 (714)
..++..++.+.|++.+|+..+..++ +++.++++++..+..... ....++.+. .
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~----~iGd~le~e---g 1209 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ----QVGDRCYDE---K 1209 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH----HHHHHHHhc---C
Confidence 3567888999999999999986533 445555555544432111 122222111 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHHHH
Q 005098 64 VLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYIL 114 (714)
Q Consensus 64 vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~l 114 (714)
-++-+...|.+-+.|..+..+.+++++.+...+.+.+..++..-+|.+|.+
T Consensus 1210 ~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1210 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 1260 (1630)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455667777889999999999999999999999888877777777665
No 121
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=60.06 E-value=1.1e+02 Score=28.30 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=32.8
Q ss_pred CchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-HhHHHHHHhhhc-CCCChhHH
Q 005098 264 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDV 341 (714)
Q Consensus 264 ~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~ 341 (714)
.....+-+.+.+|..+.... +-+.++..+...+...... ..+...+|.+|...++ ++..+.+...+. ++. ..
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~-- 91 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFG-DYEKAAEAFTKAIEENKED--AIPYINFANLLSSVNELERALAFYDKALELDSS-AA-- 91 (243)
T ss_dssp -------------------------CCTTHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH--
T ss_pred CchhHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-ch--
Confidence 34455555666666554321 1223455555554432211 2344455555555444 234444444443 221 11
Q ss_pred HHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 005098 342 IAFSAISLGLIYVGSCNEEVAQAIIFA 368 (714)
Q Consensus 342 ~~~AalaLGLi~lGs~~~~~~e~Ll~~ 368 (714)
.+-..+|.++...++.+.+...+..
T Consensus 92 --~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 92 --TAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2344566666666655444444443
No 122
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=59.67 E-value=1.2e+02 Score=28.57 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=76.4
Q ss_pred CchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC------CChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc---
Q 005098 264 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN--- 333 (714)
Q Consensus 264 ~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~--- 333 (714)
+.....-++..+|.++.... +-+.++..+...+.. ++......+...+|.+|.-.++. +..+.+...+.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33455667777777765332 334567666665532 33455566788888888877764 34444433331
Q ss_pred ---CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc----CccccCchhHhHHHHHHhHhhcCChhhHHHHHHH
Q 005098 334 ---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR----SESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 406 (714)
Q Consensus 334 ---d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~----~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~ 406 (714)
++.... ...+-..+|.++...++-+-+...++..... ...+..........+|..+...|+-+++...++.
T Consensus 117 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 117 KVLGKFHPD--VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHCTTCHH--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111121 2256778888888888876555544443321 0010011122233445555566777766666554
Q ss_pred Hh
Q 005098 407 SK 408 (714)
Q Consensus 407 L~ 408 (714)
..
T Consensus 195 ~l 196 (283)
T 3edt_B 195 IL 196 (283)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 123
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=59.01 E-value=2.1 Score=43.27 Aligned_cols=189 Identities=21% Similarity=0.148 Sum_probs=101.6
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhccCCCHhHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc
Q 005098 293 LSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR 372 (714)
Q Consensus 293 L~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~ 372 (714)
+...+.++++.+|..++..|+ .+.|...+.|++ ..+...++-.|+ . + .+..+.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~-----------~~~l~~L~~D~~--~~VR~~aA~~L~-----~------~-~L~~ll-- 107 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP-----------VEALTPLIRDSD--EVVRRAVAYRLP-----R------E-QLSALM-- 107 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-----------GGGGGGGTTCSS--HHHHHHHHTTSC-----S------G-GGGGTT--
T ss_pred HHHHhcCCCHHHHHHHHHhCC-----------HHHHHHHccCcC--HHHHHHHHHHCC-----H------H-HHHHHH--
Confidence 345567778888887777542 123455556653 344445554432 1 1 122121
Q ss_pred CccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCcc
Q 005098 373 SESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEA 452 (714)
Q Consensus 373 ~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~ 452 (714)
.+ .+..+|.++.. .+ . ...+..|..++++..|..++-.+ + ..++..+..+.+ ..
T Consensus 108 --~D-~d~~VR~~aA~-~l----~----~~~L~~L~~D~d~~VR~~aA~~l-------~-----~~~l~~l~~D~d--~~ 161 (244)
T 1lrv_A 108 --FD-EDREVRITVAD-RL----P----LEQLEQMAADRDYLVRAYVVQRI-------P-----PGRLFRFMRDED--RQ 161 (244)
T ss_dssp --TC-SCHHHHHHHHH-HS----C----TGGGGGGTTCSSHHHHHHHHHHS-------C-----GGGGGGTTTCSC--HH
T ss_pred --cC-CCHHHHHHHHH-hC----C----HHHHHHHHcCCCHHHHHHHHHhc-------C-----HHHHHHHHcCCC--HH
Confidence 11 34455554432 21 1 12344555667777777654321 1 123333333333 26
Q ss_pred ccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHH
Q 005098 453 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVIS 532 (714)
Q Consensus 453 vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiA 532 (714)
||+.++-.+ +. .++..++++.++.||..++-.++ .+.|..+++|++..||..++-+
T Consensus 162 VR~~aa~~l-----~~--------~ll~~ll~D~d~~VR~aaa~~l~-----------~~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 162 VRKLVAKRL-----PE--------ESLGLMTQDPEPEVRRIVASRLR-----------GDDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp HHHHHHHHS-----CG--------GGGGGSTTCSSHHHHHHHHHHCC-----------GGGGGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHcC-----CH--------HHHHHHHcCCCHHHHHHHHHhCC-----------HHHHHHHHcCCCHHHHHHHHHc
Confidence 776665541 22 23445678888999998887642 2468888899999999988888
Q ss_pred HHHHcCCCCchHHHHHHHHHHhhhccChhHHHHHHHHHhh
Q 005098 533 LGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGL 572 (714)
Q Consensus 533 lGlV~aGt~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gl 572 (714)
+| ...|..| + ..++.++..+.-++|+
T Consensus 218 l~-----------~~~L~~L-~--D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 218 AS-----------LEALREL-D--EPDPEVRLAIAGRLGI 243 (244)
T ss_dssp SC-----------HHHHHHC-C--CCCHHHHHHHHCCC--
T ss_pred CC-----------HHHHHHc-c--CCCHHHHHHHHHHhCC
Confidence 65 1334443 2 3456677777666664
No 124
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=57.65 E-value=1.5e+02 Score=29.69 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=80.3
Q ss_pred cccchhHHHHHHhhcccchhhhhHHHH---HHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHH
Q 005098 452 AYQGPAVLGIAMVAMAEELGLEMAIRS---LEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMA 528 (714)
Q Consensus 452 ~vrr~avl~lalI~~~~~~~~~~~~~~---l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~ 528 (714)
.+.--|.=+++.+.-+.|.+.+...++ +..+....++.++--++=.+|.+-.-+...++++.|..+++..|..|+-.
T Consensus 90 kval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~a 169 (265)
T 3b2a_A 90 KVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVA 169 (265)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHH
Confidence 444456666777888887765554444 44445678899999999999999888899999999999999999999988
Q ss_pred HHHHHHHHcCCCCchHH-HHHHHHHHhhh-ccChh
Q 005098 529 AVISLGLIGSGTNNARI-AGMLRNLSSYY-YKDAN 561 (714)
Q Consensus 529 AiiAlGlV~aGt~n~rv-~~~lr~l~~~~-~~d~~ 561 (714)
|+-++--+..-|+|+.+ ..+++.++... ++||-
T Consensus 170 gl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~ 204 (265)
T 3b2a_A 170 GFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEF 204 (265)
T ss_dssp HHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHH
T ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHH
Confidence 88888777777776543 23444544443 45653
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=56.95 E-value=1.3e+02 Score=28.25 Aligned_cols=74 Identities=8% Similarity=-0.077 Sum_probs=41.0
Q ss_pred hhhcccchhhHHhhhhhccC-CCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHHhc
Q 005098 243 MILLWDVDSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYA 317 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s-~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~ 317 (714)
....|+.+++...+.+.+.. +.+....-+.+.+|.++.... +-+.++..+...+.. ++.....-|.+-+|.++.
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 34568889998888877642 222233456677777765432 345577777776642 221111224455555553
No 126
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=56.61 E-value=11 Score=43.65 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHH------HH-HHHHHhhcCCchHHHHHHHHHHHHHcC
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVN------VM-DTLSRLSHDTDSEVAMAAVISLGLIGS 538 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~------ai-~~L~~l~~D~~~~Vr~~AiiAlGlV~a 538 (714)
+.+..++++| ++.++..|.++|.||+-++.++...+ ++ ..|.+++.|++..||..|.-|++-+..
T Consensus 34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4455677764 77899999999999999875432222 23 346788899999999999988876654
No 127
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=56.13 E-value=2.7e+02 Score=31.71 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=82.2
Q ss_pred ccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCC---------CChhhHHHHHHH--------hccCC-ChHHHHHH
Q 005098 247 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIR---------NDCDPALALLSE--------YVGRE-DACIRIGA 308 (714)
Q Consensus 247 ~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~---------~e~d~~~~lL~~--------~L~~~-~~~v~~gA 308 (714)
|-.+ -.+.|-.-|.++.=.+|.||.+||--+-..+. +. |-+..+|.- |+.+. -.+||-.+
T Consensus 171 WPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 171 NVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp SGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred CHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHH
Confidence 4444 34444444567777899999999998765432 22 446666543 23332 26899999
Q ss_pred HHHHHHHhccCCCHhHHHHHHhhhcC-CCChhHHHHHHHHHHHhHhcCCCC-----HHHHHHHHHHHhhcCccccCchhH
Q 005098 309 IMGLGISYAGTQNDQIRHKLSTILND-AKSPLDVIAFSAISLGLIYVGSCN-----EEVAQAIIFALMDRSESELGEPLT 382 (714)
Q Consensus 309 ~lGLGl~y~Gs~~~~i~e~L~~~l~d-~~~~~e~~~~AalaLGLi~lGs~~-----~~~~e~Ll~~L~~~~~~~l~~~~~ 382 (714)
+-.||.+ ...+++ .+.|...+.. ....=|+++++.+||- |+ .+ +.+++.++.-|.+ . +|.++
T Consensus 249 AQtLGaL--~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLK--YL--~DLL~~Ld~Vv~aVL~GL~D---~--DDDVR 316 (800)
T 3oc3_A 249 AYLLSRI--YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALG--YL--KEFVEDKDGLCRKLVSLLSS---P--DEDIK 316 (800)
T ss_dssp HHHHHHH--TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHH--HT--GGGCCCHHHHHHHHHHHTTC---S--SHHHH
T ss_pred HHHHHHH--HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHH--HH--HHHHHHHHHHHHHHHhhcCC---c--ccHHH
Confidence 9999998 555555 5666666642 1233567888888887 44 22 2334444443321 1 34444
Q ss_pred hHHHHHHhHhhcCChhhHHHHHHH
Q 005098 383 RLIPLGLGLLYLGKQESVEATAEV 406 (714)
Q Consensus 383 r~a~l~lgLi~lG~~e~~~~ll~~ 406 (714)
..+| -.|+-+-.++..+.+++.
T Consensus 317 AVAA--etLiPIA~p~~l~~LL~i 338 (800)
T 3oc3_A 317 LLSA--ELLCHFPITDSLDLVLEK 338 (800)
T ss_dssp HHHH--HHHTTSCCSSTHHHHHHH
T ss_pred HHHH--HHhhhhcchhhHHHHHHH
Confidence 3333 333333366666666543
No 128
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=55.40 E-value=44 Score=33.12 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHhhHHHHHhhhccCCCc-HH------HHHHHHHhhc-CCchHHHHHHHHHHHHHc
Q 005098 476 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VN------VMDTLSRLSH-DTDSEVAMAAVISLGLIG 537 (714)
Q Consensus 476 ~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~-~~------ai~~L~~l~~-D~~~~Vr~~AiiAlGlV~ 537 (714)
+.+++ ++.+.++.++..++.||.-+..++.. .. ++..|-++++ .++..++.+|.-+|--+.
T Consensus 55 p~LV~-lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 55 LKLLQ-LLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHH-GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 33343 34567788888888888887765532 22 3455666665 356667766654544443
No 129
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=55.32 E-value=24 Score=35.13 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=38.2
Q ss_pred hcCCH--HHHhhHHHHHhhhccCCCcHH-------HHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 005098 484 QYGEQ--NIRRAVPLALGLLCISNPKVN-------VMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 541 (714)
Q Consensus 484 ~~~~~--~vr~g~~lALGl~~aGt~~~~-------ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~ 541 (714)
++.++ .++..++.++..++.+++..+ +|..|-++++.++..++..|.-||.-+..++.
T Consensus 18 ~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 18 EADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 44555 566666666666655543222 34567777777888899988888888877643
No 130
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=53.96 E-value=2.1e+02 Score=32.38 Aligned_cols=83 Identities=11% Similarity=-0.071 Sum_probs=35.2
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHH
Q 005098 345 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 424 (714)
Q Consensus 345 AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~g 424 (714)
+-+.+|.++...++-+.+...++...+..+ +.......+|..+...|+-+++...++.....+... ..+-..+|
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg 508 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVG----WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALA 508 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHH
Confidence 344555555555554444333333322111 112233344555556666555555444333221111 11223445
Q ss_pred HHhhcCCCH
Q 005098 425 CAYAGTGNV 433 (714)
Q Consensus 425 layaGtGn~ 433 (714)
.+|...|+.
T Consensus 509 ~~~~~~g~~ 517 (681)
T 2pzi_A 509 ATAELAGNT 517 (681)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCh
Confidence 555555553
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=53.46 E-value=94 Score=31.69 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=76.8
Q ss_pred HHHHHHHhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHH
Q 005098 234 KMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLG 313 (714)
Q Consensus 234 ~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLG 313 (714)
.+....+.-++..|+.+++.+.+..-+.....+. +.+.+|+++.... .-+.++..|.+.+..+++.....+.+-||
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAE-RWTDVIDQVKSAGKWPDKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTT-CHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcC-CHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence 3334444445567888888888877665444344 5566666554321 22347777776666555555555666777
Q ss_pred HHhccCCCH-hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhh
Q 005098 314 ISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD 371 (714)
Q Consensus 314 l~y~Gs~~~-~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~ 371 (714)
.++..-++. +..+.+...+..+ .......-+.+.+|++....|..+-+..+++.+..
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777666653 5556665554321 10111113566777777777777777777776654
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=52.63 E-value=1.1e+02 Score=33.04 Aligned_cols=70 Identities=13% Similarity=-0.001 Sum_probs=39.0
Q ss_pred hhcccc-hhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccC
Q 005098 244 ILLWDV-DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 319 (714)
Q Consensus 244 I~~~~~-~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs 319 (714)
...|+. ++|...+.+-+.-.... .-+...+|.++... .+-+.+...+...+.-... ..+...+|.+|...
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPEL--VEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQL 183 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTC
T ss_pred HhccccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHh
Confidence 345677 77777776665433222 23555556555432 1234466666666653322 25667777777665
No 133
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=51.24 E-value=1.2e+02 Score=29.59 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=55.9
Q ss_pred HHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcH-HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 005098 462 AMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 540 (714)
Q Consensus 462 alI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~-~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt 540 (714)
|-+....| +.+...+...+.+.++.+|+.+..++ +.+....+. .....+..+.+|++.+|+.+.--+|.-++.
T Consensus 122 g~~~~~~p---~~~~~~l~~W~~s~~~w~rR~ai~~~-l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k-- 195 (232)
T 3jxy_A 122 GDIFLKHP---ELISAYIPKWIASDNIWLQRAAILFQ-LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK-- 195 (232)
T ss_dssp HHHHHHCG---GGGGGTHHHHHHSSCHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHCH---HHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--
Confidence 34444455 44556677888999999999988765 444433443 444567888999999999875555555544
Q ss_pred Cch-HHHHHHHH
Q 005098 541 NNA-RIAGMLRN 551 (714)
Q Consensus 541 ~n~-rv~~~lr~ 551 (714)
.+| .+..++.+
T Consensus 196 ~~p~~v~~fl~~ 207 (232)
T 3jxy_A 196 TNPDVVWEYVQN 207 (232)
T ss_dssp TCHHHHHHHHHH
T ss_pred hCHHHHHHHHHH
Confidence 443 45666665
No 134
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=51.14 E-value=1.9e+02 Score=28.59 Aligned_cols=251 Identities=10% Similarity=0.035 Sum_probs=122.2
Q ss_pred HhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCC
Q 005098 278 VNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS 356 (714)
Q Consensus 278 i~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs 356 (714)
++.|.... ++....... ..++....-+-+-++-+|...++. ++.+.+.. .+ +... .+-..++..+.+.
T Consensus 10 ~~~g~y~~---ai~~~~~~~-~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~-~~~~--~a~~~la~~~~~~ 78 (291)
T 3mkr_A 10 FYIGSYQQ---CINEAQRVK-PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SS-APEL--QAVRMFAEYLASH 78 (291)
T ss_dssp HHTTCHHH---HHHHHHHSC-CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TS-CHHH--HHHHHHHHHHHCS
T ss_pred HHHHHHHH---HHHHHHhcc-cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cC-ChhH--HHHHHHHHHHcCC
Confidence 34554333 555554433 333333333444455666666553 34443332 21 2233 3455566667777
Q ss_pred CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHH
Q 005098 357 CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV 436 (714)
Q Consensus 357 ~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i 436 (714)
++.+.+-..++.+.... ..+.... -...+|..+...|+-+++...++. ++ .......+|..|...|+.+..
T Consensus 79 ~~~~~A~~~l~~ll~~~-~~P~~~~-~~~~la~~~~~~g~~~~Al~~l~~----~~---~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRS-VDVTNTT-FLLMAASIYFYDQNPDAALRTLHQ----GD---SLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp TTHHHHHHHHHHHHHSC-CCCSCHH-HHHHHHHHHHHTTCHHHHHHHHTT----CC---SHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHhcc-cCCCCHH-HHHHHHHHHHHCCCHHHHHHHHhC----CC---CHHHHHHHHHHHHHCCCHHHH
Confidence 76555444455444321 1112222 234456667777777777666554 11 112344567788889996654
Q ss_pred HHHHhhccccCCCCccccchhHHHHHHhhc----ccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCC-cHHHH
Q 005098 437 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAM----AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP-KVNVM 511 (714)
Q Consensus 437 ~~LL~~~~~~~~~~~~vrr~avl~lalI~~----~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~-~~~ai 511 (714)
.+.++-+.+...+ .. ..-++.+++.+ ++. +.+.+.++.++..+..+.. +-..+|.++...+ -.+|.
T Consensus 150 ~~~l~~~~~~~p~--~~--~~~l~~a~~~l~~~~~~~---~eA~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 150 RKELKKMQDQDED--AT--LTQLATAWVSLAAGGEKL---QDAYYIFQEMADKCSPTLL--LLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp HHHHHHHHHHCTT--CH--HHHHHHHHHHHHHCTTHH---HHHHHHHHHHHHHSCCCHH--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhCcC--cH--HHHHHHHHHHHHhCchHH---HHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHH
Confidence 4444443322111 22 22333343333 332 6788888887765322222 2223333333333 45666
Q ss_pred HHHHHh-hcCCchHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHhhhccCh
Q 005098 512 DTLSRL-SHDTDSEVAMAAVISLGLIG--SGTNNARIAGMLRNLSSYYYKDA 560 (714)
Q Consensus 512 ~~L~~l-~~D~~~~Vr~~AiiAlGlV~--aGt~n~rv~~~lr~l~~~~~~d~ 560 (714)
..+.+. ..||++.-. ...+|.+. .|.....+.++++++.+..-.+|
T Consensus 221 ~~l~~al~~~p~~~~~---l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 221 GVLQEALDKDSGHPET---LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 777765 456654322 23334333 45443345677777766643444
No 135
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.07 E-value=28 Score=43.75 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=49.0
Q ss_pred HHHHhcCChhhhHHHhcc-cC-----------------hHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHHHHHH
Q 005098 22 DLLMEVEDLDLLVEHVDA-TN-----------------FKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQ 83 (714)
Q Consensus 22 dlllE~~~ld~i~~~vd~-~~-----------------~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~~al~ 83 (714)
++++|-++-+.+.+-||. +| +.||-.|+....+.+ +...++|.+.+.|.+|+.
T Consensus 1469 el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~---------~~ai~l~k~d~l~~dAm~ 1539 (1630)
T 1xi4_A 1469 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRW---------KQSVELCKKDSLYKDAMQ 1539 (1630)
T ss_pred HHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcH---------HHHHHHHHhccCHHHHHH
Confidence 556666665555554443 22 356666666664433 456678888889999999
Q ss_pred HHHhcCChhHHHHHHhh
Q 005098 84 IALFLDNMQYVKQIFTS 100 (714)
Q Consensus 84 ~al~l~d~~~i~~i~~~ 100 (714)
+|.+.+|.+.+++++.-
T Consensus 1540 ~a~~S~d~e~~e~ll~~ 1556 (1630)
T 1xi4_A 1540 YASESKDTELAEELLQW 1556 (1630)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999988875
No 136
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=50.46 E-value=1.8e+02 Score=27.87 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=88.6
Q ss_pred CchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC------CChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc---
Q 005098 264 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN--- 333 (714)
Q Consensus 264 ~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~--- 333 (714)
+.....-++..+|.++.... +-+.++..+...+.- ++.....-+...+|.+|...++- +..+.+...+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455666777777765332 344577767666541 23445556777788888776653 34444433332
Q ss_pred ---CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcC-cc--ccCchhHh--HHHHHHhHhhcCChhhHHHHHH
Q 005098 334 ---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRS-ES--ELGEPLTR--LIPLGLGLLYLGKQESVEATAE 405 (714)
Q Consensus 334 ---d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~-~~--~l~~~~~r--~a~l~lgLi~lG~~e~~~~ll~ 405 (714)
..+.. ....+-..+|.++...++.+.+...++...+.. .. . ..+... ...+|..+...|+-+++...++
T Consensus 101 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 101 KTLGKDHP--AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCCCh--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 01112 122567788888888888765555554433211 00 0 112222 2333444555566566665555
Q ss_pred HHhhc------hhhhhhhhHHHHHHHHhhcCCCHHHHH
Q 005098 406 VSKTF------NEKIRKYCDMTLLSCAYAGTGNVLKVQ 437 (714)
Q Consensus 406 ~L~~~------~~~~~r~~~~~~~glayaGtGn~~~i~ 437 (714)
..... ++..........+|..|...|+.....
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44332 112222334456788888889854433
No 137
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=49.90 E-value=1.4e+02 Score=26.50 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=72.2
Q ss_pred hhhhh--cccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhcc
Q 005098 241 LGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAG 318 (714)
Q Consensus 241 lGlI~--~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~G 318 (714)
+|.++ .|+.++|++.+.+-+.-...+ .-+...+|.++.... +.+.++..+...+...... ..+...+|..+..
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKADPNN--VETLLKLGKTYMDIG-LPNDAIESLKKFVVLDTTS--AEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCchh--HHHHHHHHHHHHH
Confidence 45544 478888888777766533333 345666666664332 2344555555444321111 1233444555555
Q ss_pred CCCH-hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCC
Q 005098 319 TQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK 396 (714)
Q Consensus 319 s~~~-~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~ 396 (714)
..+. ...+.+...+. ++. .. .+-..+|.++.-.++-+-+...++...+..+. . ......+|..+...|+
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~-~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTV-YA----DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---F-IRAYQSIGLAYEGKGL 156 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C-HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhCcc-ch----HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---h-hhHHHHHHHHHHHCCC
Confidence 5543 33344433332 221 12 24456677777666654443333333222211 1 2223344555556666
Q ss_pred hhhHHHHHHH
Q 005098 397 QESVEATAEV 406 (714)
Q Consensus 397 ~e~~~~ll~~ 406 (714)
-+++...++.
T Consensus 157 ~~~A~~~~~~ 166 (184)
T 3vtx_A 157 RDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 138
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=46.12 E-value=1.8e+02 Score=26.80 Aligned_cols=238 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc-----CCChHHHHH
Q 005098 233 GKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG-----REDACIRIG 307 (714)
Q Consensus 233 ~~~~a~aslGlI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~-----~~~~~v~~g 307 (714)
+......+.-....|+.++++..+.+.+... .....-..+|.-....|...+ ++..+...+. .++......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYET---AISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHH---HHHHHHHHHHhCcccccchHHHHH
Q ss_pred HHHHHHHHhccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHH
Q 005098 308 AIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLI 385 (714)
Q Consensus 308 A~lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a 385 (714)
+...+|.+|...++ ++..+.+...+. ++. +-++...++.+-+...+....... .+......
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 143 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------ADILTKLRNAEKELKKAEAEAYVN----PEKAEEAR 143 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------hHHHHHHhHHHHHHHHHHHHHHcC----cchHHHHH
Q ss_pred HHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhh
Q 005098 386 PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA 465 (714)
Q Consensus 386 ~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~ 465 (714)
.+|..+...|+-+++...++........ .......+|..|...|+.....+.+.-+.+...+ .......+|..+..
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHH
Q ss_pred cccchhhhhHHHHHHHHHhcC--------CHHHHhhHHHHH
Q 005098 466 MAEELGLEMAIRSLEHLLQYG--------EQNIRRAVPLAL 498 (714)
Q Consensus 466 ~~~~~~~~~~~~~l~~L~~~~--------~~~vr~g~~lAL 498 (714)
.++. +.+.+.++...+.. ++.++....-|+
T Consensus 220 ~g~~---~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 220 VKEY---ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp TTCH---HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HhhH---HHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
No 139
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=45.58 E-value=1.5e+02 Score=25.60 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.9
Q ss_pred HHHhhcCCC
Q 005098 424 SCAYAGTGN 432 (714)
Q Consensus 424 glayaGtGn 432 (714)
|..|...|+
T Consensus 117 a~~~~~~~~ 125 (186)
T 3as5_A 117 GVALDNLGR 125 (186)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCc
Confidence 334444444
No 140
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=45.34 E-value=1.8e+02 Score=33.68 Aligned_cols=156 Identities=13% Similarity=-0.004 Sum_probs=87.1
Q ss_pred HHHhhhhh--cccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 005098 238 AASLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGIS 315 (714)
Q Consensus 238 ~aslGlI~--~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~ 315 (714)
...||.++ .|+.++|.+.+.+-+.-..++ ..+...+|.++.... +-+.+++.+...+.-.... ..+...||.+
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--~~a~~nLg~~l~~~g-~~~eA~~~~~~Al~l~P~~--~~a~~nLg~~ 86 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTF--ADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 33455554 588899888887776533333 345566666654332 2344777776665422111 2466778888
Q ss_pred hccCCC-HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhh
Q 005098 316 YAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLY 393 (714)
Q Consensus 316 y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~ 393 (714)
|...++ ++..+.+...+. +++ .. .+-..||.++...++-+.+...++...+..+. . ......+|..+..
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~----~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---~-~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FA----DAHSNLASIHKDSGNIPEAIASYRTALKLKPD---F-PDAYCNLAHCLQI 157 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---C-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-hHHHhhhhhHHHh
Confidence 877665 356666666654 432 12 25567788887777755444444433322211 1 2234455666777
Q ss_pred cCChhhHHHHHHHH
Q 005098 394 LGKQESVEATAEVS 407 (714)
Q Consensus 394 lG~~e~~~~ll~~L 407 (714)
+|+-+++....+.+
T Consensus 158 ~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 158 VCDWTDYDERMKKL 171 (723)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 77766666554433
No 141
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=45.08 E-value=69 Score=31.19 Aligned_cols=74 Identities=9% Similarity=-0.025 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHH-HHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch-HHHHHH
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNV-MDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA-RIAGML 549 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~a-i~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~l 549 (714)
+.+...+...+++.++.+|+.+..++ +.+...++.+. .+.+..+.+|++.+|+.+.-=+|.-++. .|| .+..++
T Consensus 123 ~~~~~~i~~W~~s~~~w~rR~ai~~~-l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k--~~~~~v~~fl 198 (220)
T 2b6c_A 123 TELPTIFALFYGAENFWNRRVALNLQ-LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK--TNPQWVEELM 198 (220)
T ss_dssp GGHHHHHHHHTTCSSHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh--hCHHHHHHHH
Confidence 55666777888999999999988855 55554445443 4567778999999999976566665544 444 355665
No 142
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=44.28 E-value=1.4e+02 Score=24.95 Aligned_cols=132 Identities=15% Similarity=-0.027 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc--CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccC
Q 005098 302 ACIRIGAIMGLGISYAGTQND-QIRHKLSTILN--DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELG 378 (714)
Q Consensus 302 ~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~--d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~ 378 (714)
+..+.-+...+|.+|...++. +..+.+...+. +..........+-..+|.++.-.++.+.+...+....+..+.. .
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~ 83 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-K 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C
Confidence 344445666677776666553 33343333331 0000112222455667777777766554444333322111000 1
Q ss_pred ch---hHhHHHHHHhHhhcCChhhHHHHHHHHh----hchhhhhhhhHHHHHHHHhhcCCCHH
Q 005098 379 EP---LTRLIPLGLGLLYLGKQESVEATAEVSK----TFNEKIRKYCDMTLLSCAYAGTGNVL 434 (714)
Q Consensus 379 ~~---~~r~a~l~lgLi~lG~~e~~~~ll~~L~----~~~~~~~r~~~~~~~glayaGtGn~~ 434 (714)
++ ......+|..+...|+-+++...++... ..+++.........+|..|...|+..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 11 1112233444445555555554433222 22223333333445566666666644
No 143
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=44.03 E-value=76 Score=28.51 Aligned_cols=12 Identities=0% Similarity=-0.255 Sum_probs=4.9
Q ss_pred HHHhHhcCCCCH
Q 005098 348 SLGLIYVGSCNE 359 (714)
Q Consensus 348 aLGLi~lGs~~~ 359 (714)
.+|.+++..++.
T Consensus 11 ~~a~~~~~~g~~ 22 (176)
T 2r5s_A 11 KQVSELLQQGEH 22 (176)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHcCCH
Confidence 334444444443
No 144
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=43.67 E-value=1.6e+02 Score=25.40 Aligned_cols=18 Identities=0% Similarity=0.050 Sum_probs=11.2
Q ss_pred hhcccchhhHHhhhhhcc
Q 005098 244 ILLWDVDSGLAQIDKYFH 261 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~ 261 (714)
...|+.++++..+.+.+.
T Consensus 19 ~~~~~~~~A~~~~~~~~~ 36 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYD 36 (186)
T ss_dssp HHHTCHHHHHHHHTTTCC
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 345677777766666554
No 145
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=41.66 E-value=2.2e+02 Score=26.50 Aligned_cols=123 Identities=10% Similarity=0.038 Sum_probs=74.0
Q ss_pred hhcccchhhHHhhhhhccC------CCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC------CChHHHHHHHHH
Q 005098 244 ILLWDVDSGLAQIDKYFHS------TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------EDACIRIGAIMG 311 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s------~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~~~~v~~gA~lG 311 (714)
...|+.+++...+.+-+.. .+.....-+...+|.++.... +-+.+...+...+.- ++......+...
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 132 (283)
T 3edt_B 54 RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN 132 (283)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3467888888877766542 445566778888888876442 345577666655532 333455677888
Q ss_pred HHHHhccCCCH-hHHHHHHhhhc------CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHH
Q 005098 312 LGISYAGTQND-QIRHKLSTILN------DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFAL 369 (714)
Q Consensus 312 LGl~y~Gs~~~-~i~e~L~~~l~------d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L 369 (714)
+|.+|...++- +..+.+...+. ..+... ...+-..+|.++...++.+-+...+...
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--VAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89988877764 34444433332 111121 2256677888888877765555444433
No 146
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=41.45 E-value=4.3e+02 Score=30.39 Aligned_cols=153 Identities=8% Similarity=-0.069 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-HhHHHHHHhhhc-CCCChhHHHH
Q 005098 266 HVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIA 343 (714)
Q Consensus 266 ~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e~~~ 343 (714)
...+-|+..||.++.... +-+.+++.+...++-.... ..+...||.+|...++ ++..+.+...+. +++. .
T Consensus 6 P~~a~al~nLG~~~~~~G-~~~eAi~~~~kAl~l~P~~--~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~---- 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-A---- 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----
T ss_pred CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----
Confidence 345667778888776432 3345777777666522111 3567778888877765 456666666654 4321 2
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHH
Q 005098 344 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 423 (714)
Q Consensus 344 ~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~ 423 (714)
.+-..||.++...++-+.+...++...+..+. .......+|..+...|+-+++....+.....+.... .+..-+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~--~a~~~L 151 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP--DAYCNL 151 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHhhh
Confidence 35567788877777765544444433322211 122334556666666776666555544333221111 122344
Q ss_pred HHHhhcCCC
Q 005098 424 SCAYAGTGN 432 (714)
Q Consensus 424 glayaGtGn 432 (714)
|.+|...|+
T Consensus 152 ~~~l~~~g~ 160 (723)
T 4gyw_A 152 AHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTC
T ss_pred hhHHHhccc
Confidence 555666665
No 147
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=41.41 E-value=1.5e+02 Score=26.47 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=68.4
Q ss_pred hhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHH-HHHHhccCCCH
Q 005098 244 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMG-LGISYAGTQND 322 (714)
Q Consensus 244 I~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lG-LGl~y~Gs~~~ 322 (714)
...|+.+++...+.+-+...... ..+.+.+|.++... .+.+.++..+...+.... .......++ +.+.-.+ ...
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~-~~~ 91 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQSR--GDVKLAKADCLLET-KQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA-AES 91 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHTS--HHHHHHHHHHHHHT-TCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH-TSC
T ss_pred HHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHC-CCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc-ccc
Confidence 44678888888777666432222 34556666655432 234557777766654321 111211111 1111111 122
Q ss_pred hHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHH
Q 005098 323 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 401 (714)
Q Consensus 323 ~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~ 401 (714)
+..+.+...+. +++ +. .+-+.+|.++...++.+.+...+.......+.. .+... ...++..+...|+.+.+.
T Consensus 92 ~a~~~~~~al~~~P~-~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~a-~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 92 PELKRLEQELAANPD-NF----ELACELAVQYNQVGRDEEALELLWNILKVNLGA-QDGEV-KKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHHHSTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-TTTHH-HHHHHHHHHHHCSSCHHH
T ss_pred hHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ChHHH-HHHHHHHHHHhCCCCcHH
Confidence 23445554443 332 12 355677777777777666555555544332221 11111 223344455556555433
No 148
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=40.89 E-value=1.7e+02 Score=29.40 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=38.0
Q ss_pred HHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHH---HHHHHhcCCHHHHhhHHHHHhhhc
Q 005098 434 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS---LEHLLQYGEQNIRRAVPLALGLLC 502 (714)
Q Consensus 434 ~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~---l~~L~~~~~~~vr~g~~lALGl~~ 502 (714)
+.++.++.+..+ .+ ..+|+..+==|+-++...+ +.+++. +..|+++.+|.|.+.+..|.+-+|
T Consensus 53 ~~l~~il~~~~~-~~--~~vrk~~~~Fi~e~~~~k~---~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 53 EFLESVLSLAHD-SN--MEVRKQVVAFVEQVCKVKV---ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp HHHHHHHGGGGC-SC--HHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-Ch--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345566665433 22 2566655555555555555 444444 445567778999888888888776
No 149
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=40.83 E-value=2.5e+02 Score=26.82 Aligned_cols=94 Identities=15% Similarity=-0.009 Sum_probs=41.4
Q ss_pred CCHHHHhhHHHHHhhhccCCCc-HHHHHHHHHhh----cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHhhh--c
Q 005098 486 GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS----HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYY--Y 557 (714)
Q Consensus 486 ~~~~vr~g~~lALGl~~aGt~~-~~ai~~L~~l~----~D~~~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~~~~--~ 557 (714)
.++.....+-..+|.++...++ .++++.+.+.. ...+......+...+|.+....++. +....+++..... .
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 3444444455555555544444 34455554432 2233333344555666666555542 2233343332221 1
Q ss_pred cChhHHHHHHHHHhhhhcCCCc
Q 005098 558 KDANLLFCVRIAQGLVHMGKGL 579 (714)
Q Consensus 558 ~d~~~~~~~~lA~Gll~~G~g~ 579 (714)
.++.....+...+|.++.-.|+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHHHcCC
Confidence 2333333444445555444443
No 150
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=40.77 E-value=3e+02 Score=27.82 Aligned_cols=197 Identities=10% Similarity=0.023 Sum_probs=100.8
Q ss_pred HHHHHhhhh--hcccchhhHHhhhhhcc---CC-C-chhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHH
Q 005098 236 SAAASLGMI--LLWDVDSGLAQIDKYFH---ST-D-NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACI 304 (714)
Q Consensus 236 ~a~aslGlI--~~~~~~~~l~~l~~yL~---s~-~-~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v 304 (714)
.+...+|.+ +.|+.+.|+..+.+-+. .. + ....+.+...+|.++.... +-+.+...+...+. .++...
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK-HYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCHHH
Confidence 333445544 45788887776665443 21 2 3345667777888775432 34556666655543 234455
Q ss_pred HHHHHHHHHHHhccCCCH-hHHHHHHhhhc--CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchh
Q 005098 305 RIGAIMGLGISYAGTQND-QIRHKLSTILN--DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPL 381 (714)
Q Consensus 305 ~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~--d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~ 381 (714)
...+...||.+|...++. +..+.+...+. ........ ..+...+|.++...++.+.+...++...+.... ..++.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 298 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA-RSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT-TCCSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCCHH
Confidence 566788889888877663 45555554443 00001122 357778888888888876555555443332111 12222
Q ss_pred HhHHHHHHhHhhcCChh--hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHH
Q 005098 382 TRLIPLGLGLLYLGKQE--SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLK 435 (714)
Q Consensus 382 ~r~a~l~lgLi~lG~~e--~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~ 435 (714)
.......++.++...++ ..+..++.+...+...........+|..|...|+...
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 354 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHH
Confidence 22222344555554433 2333333333322211122233456777777777543
No 151
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=40.72 E-value=88 Score=29.73 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=52.1
Q ss_pred ChHHHHHHHHhcCChhhhHHHhcccChHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhccCCHHHHHHHHHhcCChhHHH
Q 005098 16 AEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVK 95 (714)
Q Consensus 16 ~e~~AvdlllE~~~ld~i~~~vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~ 95 (714)
+...=-++|||.+++|.=.++.++.+....-.-+-..+-.. - =++++-+.|.+.++|...+-+..-.+|.+.++
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~---g---n~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQ---G---NASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHc---C---ChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 34455689999999887666654422222222122222111 0 12334455666666666666666667776666
Q ss_pred HHHhhc---chHHHHHHHHHHHh
Q 005098 96 QIFTSC---DDLLRKKQFCYILA 115 (714)
Q Consensus 96 ~i~~~~---~d~~~~~Qlaf~la 115 (714)
++-+.+ +|..++.|.+|.++
T Consensus 81 kla~iA~~~g~~n~af~~~l~lG 103 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNN 103 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHCccHHHHHHHHHHcC
Confidence 655543 45567777777665
No 152
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=38.43 E-value=1.2e+02 Score=32.60 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=30.0
Q ss_pred ccCCHHHHHHHHHhcCChh--HHHHHHhhcchH------HHHHHHHHHHhh
Q 005098 74 KFEEFPNALQIALFLDNMQ--YVKQIFTSCDDL------LRKKQFCYILAR 116 (714)
Q Consensus 74 ~~~~~~~al~~al~l~d~~--~i~~i~~~~~d~------~~~~Qlaf~lar 116 (714)
..++|.++|...+--.+++ ...++...+.|. ...-.+||++|.
T Consensus 225 ~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag 275 (399)
T 2pm7_A 225 DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAG 275 (399)
T ss_dssp CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhC
Confidence 3568999998888877777 666666665333 244668899884
No 153
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=38.23 E-value=1.5e+02 Score=31.73 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=22.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCChhHHHHHHhh
Q 005098 64 VLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTS 100 (714)
Q Consensus 64 vl~~~~~i~~~~~~~~~al~~al~l~d~~~i~~i~~~ 100 (714)
+.+.+=+.....++...|+-|.|-.++.|.+.++...
T Consensus 250 Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~ 286 (399)
T 2pm7_A 250 MMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLS 286 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHH
Confidence 4445555555555666666666666666666666554
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=38.00 E-value=1.5e+02 Score=30.12 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=47.0
Q ss_pred HHhHhhc--CChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCC-CCccccchhHHHHHHh
Q 005098 388 GLGLLYL--GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMV 464 (714)
Q Consensus 388 ~lgLi~l--G~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~-~~~~vrr~avl~lalI 464 (714)
.+|++++ |+-+.+...++.....+++.....+.+.+|+++...|+.......++-..+... +..........|+++.
T Consensus 140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 3344444 444455554543333334444444567778888888875544444433322211 1001113344556666
Q ss_pred hcccchhhhhHHHHHHHHHh
Q 005098 465 AMAEELGLEMAIRSLEHLLQ 484 (714)
Q Consensus 465 ~~~~~~~~~~~~~~l~~L~~ 484 (714)
..|++ +.+...++.+..
T Consensus 220 ~lGr~---deA~~~l~~a~a 236 (282)
T 4f3v_A 220 SQGNE---SAAVALLEWLQT 236 (282)
T ss_dssp HHTCH---HHHHHHHHHHHH
T ss_pred HcCCH---HHHHHHHHHHHh
Confidence 66665 666666666654
No 155
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=37.77 E-value=3.2e+02 Score=27.28 Aligned_cols=246 Identities=13% Similarity=-0.013 Sum_probs=124.8
Q ss_pred hHHHHHHHhhhhhcccchhhHHhhhhhcc---CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHHH
Q 005098 233 GKMSAAASLGMILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIR 305 (714)
Q Consensus 233 ~~~~a~aslGlI~~~~~~~~l~~l~~yL~---s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~ 305 (714)
+......+.-.+..|+.+++...+..-+. ..++.....++..+|.++.... +.+.+...+...+. ..+....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34444444444557899988887665443 3344556667777777664221 33446666665543 2345555
Q ss_pred HHHHHHHHHHhccCCCH-hHHHHHHhhhc---C-CCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCcc-ccCc
Q 005098 306 IGAIMGLGISYAGTQND-QIRHKLSTILN---D-AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSES-ELGE 379 (714)
Q Consensus 306 ~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~---d-~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~-~l~~ 379 (714)
..+...+|.++...++- +..+.+...+. . ..........+...+|.++.-.++.+.+...+....+..+. ....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 66777888888777764 33333333331 1 11100112245566888888888876666655544332111 1011
Q ss_pred hhHhHHHHHHhHhhcCChhhHHHHHHHHhhc----hhhhhhhhHH--HHHHHHhhcCCCHHHHHHHHhhccccCCCCccc
Q 005098 380 PLTRLIPLGLGLLYLGKQESVEATAEVSKTF----NEKIRKYCDM--TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAY 453 (714)
Q Consensus 380 ~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~----~~~~~r~~~~--~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~v 453 (714)
.......+|......|+.+++...++..... +.+ ...... .+.+..+...|+......++.-+.+........
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 1122233344455557777777666554332 111 111111 133444778999877766666554322110011
Q ss_pred c--chhHHHHHHhhcccchhhhhHHHHHHHHH
Q 005098 454 Q--GPAVLGIAMVAMAEELGLEMAIRSLEHLL 483 (714)
Q Consensus 454 r--r~avl~lalI~~~~~~~~~~~~~~l~~L~ 483 (714)
. ....++-.++..|+. +.+.+.++...
T Consensus 252 ~~~~~~~la~~~~~~g~~---~~A~~~l~~a~ 280 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEF---EPAEIVLEELN 280 (373)
T ss_dssp GHHHHHHHHHHHHHTTCH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHH
Confidence 1 123344455555665 55666665543
No 156
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=36.68 E-value=3.4e+02 Score=27.15 Aligned_cols=205 Identities=12% Similarity=-0.013 Sum_probs=98.4
Q ss_pred HHHHHHhhhhh--cccchhhHHhhhhhcc----CCC--chhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc---CCChH
Q 005098 235 MSAAASLGMIL--LWDVDSGLAQIDKYFH----STD--NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG---REDAC 303 (714)
Q Consensus 235 ~~a~aslGlI~--~~~~~~~l~~l~~yL~----s~~--~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~---~~~~~ 303 (714)
..+...+|.++ .|+.+++...+.+-+. ... ......+...+|.++... .+.+.+...+...+. ...+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcH
Confidence 33444455544 5788888776665543 111 133445555667665432 234557766666543 11121
Q ss_pred HHHHHHHHHHHHhccCCCH-hHHHHHHhhh---cCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCc
Q 005098 304 IRIGAIMGLGISYAGTQND-QIRHKLSTIL---NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 379 (714)
Q Consensus 304 v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l---~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~ 379 (714)
....+...+|.++...++. +..+.+...+ ........+.....++.+.++...++.+.+...+.......+.....
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 2335667788888777664 3444444333 22211122222223355656667777766666665432211110000
Q ss_pred hhHhHHHHHHhHhhcCChhhHHHHHHHHhhchh----hhhhhhHHHHHHHHhhcCCCHHHHHHHH
Q 005098 380 PLTRLIPLGLGLLYLGKQESVEATAEVSKTFNE----KIRKYCDMTLLSCAYAGTGNVLKVQNLL 440 (714)
Q Consensus 380 ~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~----~~~r~~~~~~~glayaGtGn~~~i~~LL 440 (714)
.......++-.+...|+.+++...++....... +....-....++.+|...|+.......+
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 011123445556666777766666554432211 1111113345566666667655444333
No 157
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=34.77 E-value=2.2e+02 Score=31.06 Aligned_cols=113 Identities=16% Similarity=0.029 Sum_probs=44.6
Q ss_pred ccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-HhHH
Q 005098 247 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIR 325 (714)
Q Consensus 247 ~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~i~ 325 (714)
|+.++|.+.+.+-+...... ..+...+|.++... .+-+.+...+...+...... ..+...+|.+|...++ ++..
T Consensus 3 g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD--FVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ------------------CC--HHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHH
Confidence 34455555554444322222 23444444444321 12344666666665532211 2345566666665554 3445
Q ss_pred HHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHH
Q 005098 326 HKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFAL 369 (714)
Q Consensus 326 e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L 369 (714)
+.+...+. +++ .. .+-+.+|.++...++.+.+...++..
T Consensus 78 ~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 78 VLLQQASDAAPE-HP----GIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp HHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554443 322 11 24456666666666655444444433
No 158
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=34.20 E-value=3.2e+02 Score=26.16 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHhccCCC-HhHHHHHHhhhc-CCCChhH
Q 005098 263 TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLD 340 (714)
Q Consensus 263 ~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-~~i~e~L~~~l~-d~~~~~e 340 (714)
.++....-.++.+|..+.... +-+.++..+...+...... ..+...+|.++...++ ++..+.+...+. ++. ..
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~- 89 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLA-NLAEAALAFEAVCQAAPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DI- 89 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH-
T ss_pred ccchhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CH-
Confidence 334445555666666554322 2344666666665422111 2344456666665555 345555554443 321 12
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHh
Q 005098 341 VIAFSAISLGLIYVGSCNEEVAQAIIFALM 370 (714)
Q Consensus 341 ~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~ 370 (714)
.+-..+|.++...++.+.+...+....
T Consensus 90 ---~~~~~la~~~~~~~~~~~A~~~~~~~~ 116 (327)
T 3cv0_A 90 ---AVHAALAVSHTNEHNANAALASLRAWL 116 (327)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244556666666666655555554444
No 159
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=33.88 E-value=3e+02 Score=26.98 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCHHHHhhH-HHHHhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc--CCCC--chH--HHH
Q 005098 475 AIRSLEHLLQYGEQNIRRAV-PLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG--SGTN--NAR--IAG 547 (714)
Q Consensus 475 ~~~~l~~L~~~~~~~vr~g~-~lALGl~~aGt~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~--aGt~--n~r--v~~ 547 (714)
++.++++.+.+..+.+|..+ -..+.+....++...+++.+...+...++-|+..++..+.-+. .|+. +++ +..
T Consensus 104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~ 183 (278)
T 4ffb_C 104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE 183 (278)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHH
Confidence 44555554445566776543 3444555666677788888888888888888887766665443 3433 332 223
Q ss_pred HHHHHHhhh-ccChhHHHHHHHHHhhhh
Q 005098 548 MLRNLSSYY-YKDANLLFCVRIAQGLVH 574 (714)
Q Consensus 548 ~lr~l~~~~-~~d~~~~~~~~lA~Gll~ 574 (714)
++..+.+.. +.|+.+|=++.-.+|-++
T Consensus 184 i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 184 LLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 333444332 578888877777766664
No 160
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=33.88 E-value=1.3e+02 Score=32.60 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=78.7
Q ss_pred cchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHH--------------hh---HHHHHhhhccCCCcHHHHHHHHH
Q 005098 454 QGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIR--------------RA---VPLALGLLCISNPKVNVMDTLSR 516 (714)
Q Consensus 454 rr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr--------------~g---~~lALGl~~aGt~~~~ai~~L~~ 516 (714)
-+.|...+||.++++++....-.+++.+|-+..++..+ |. +.+||-.... .-...++..|..
T Consensus 85 G~lAl~iLAL~a~C~d~p~~~g~~Lv~~L~~~~~~e~~~~~~~~~~~p~tn~Yq~sL~vLALC~~g~-~v~~~~v~~Ll~ 163 (414)
T 2bb6_A 85 GQLALYLLALRANCEFIGGRKGDRLVSQLKRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQK-RVHDSVVGKLLY 163 (414)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCSSCHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcccchhHHHHHHHHHHHHHhhccccCCCCcccchHHHHHHHHHHHHcCC-CccHHHHHHHHH
Confidence 36788889997777762222445556665322222221 22 2233332222 234455555544
Q ss_pred hh-cC-----CchHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHhhh--ccChh----HHHHHHHH-HhhhhcCC
Q 005098 517 LS-HD-----TDSEVAMAAVISLGLIGSGTNN------ARIAGMLRNLSSYY--YKDAN----LLFCVRIA-QGLVHMGK 577 (714)
Q Consensus 517 l~-~D-----~~~~Vr~~AiiAlGlV~aGt~n------~rv~~~lr~l~~~~--~~d~~----~~~~~~lA-~Gll~~G~ 577 (714)
.. +| ...+|-..|+..|++..++..+ ++|-+.++.+.++. .+.++ ..+-+.+| |+|.-+|.
T Consensus 164 ~~~~~~~~~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN~~ST~lA~QAL~~~~~ 243 (414)
T 2bb6_A 164 AVEHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGNVYSTPLALQLLMGSLR 243 (414)
T ss_dssp HHHSSSCSCCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSSTTTHHHHHHHHTTCSS
T ss_pred HhhccCcCCCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhcCC
Confidence 33 32 2235777777777777776532 45666675555442 12332 12334555 66666653
Q ss_pred C------cc------cccccCCCCCCCChHHHHHHHHHHH
Q 005098 578 G------LL------TLNPYHSDRFLLSPTALAGIVTTLF 605 (714)
Q Consensus 578 g------~~------tls~~~sd~~~~~~~a~agLl~~l~ 605 (714)
- ++ -++ ..+|..|-++.+.+-++.++.
T Consensus 244 ~~~~~~w~~~~a~~~Ll~-q~~dG~F~np~ataQ~lpaL~ 282 (414)
T 2bb6_A 244 PSVELGTACLKAKAALQA-SLQHKTFQNPLMISQLLPVLN 282 (414)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHTTTCCCSHHHHHHHHHHTT
T ss_pred CcccccchHHHHHHHHHH-hccCCCCCChHHHHHHHHHhc
Confidence 1 11 144 567777778877777776664
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=33.15 E-value=3.9e+02 Score=26.92 Aligned_cols=165 Identities=10% Similarity=-0.029 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHhccC----CChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhhc---CCCChhHHH
Q 005098 271 ALLGVGIVNCGIRNDCDPALALLSEYVGR----EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKSPLDVI 342 (714)
Q Consensus 271 AllaLGli~~G~~~e~d~~~~lL~~~L~~----~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l~---d~~~~~e~~ 342 (714)
..+-.|..+... .+-+.++..+...+.- +++.....+...+|.+|...++. ...+.+...+. .........
T Consensus 103 ~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 344445544322 1234466666655432 44566667788888888777664 34444443332 111111122
Q ss_pred HHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH-HHHHHhHh--hcCChhhHHHHHHHHhh----chhhhh
Q 005098 343 AFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL-IPLGLGLL--YLGKQESVEATAEVSKT----FNEKIR 415 (714)
Q Consensus 343 ~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~-a~l~lgLi--~lG~~e~~~~ll~~L~~----~~~~~~ 415 (714)
..+-..+|.++...++-+-+...+....+.... ..++...+ +-..+|.+ ..|+-+++...++.... ..+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMD-IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 356668888888888765554444332221110 12222111 12234444 44555555444332222 233433
Q ss_pred hhhHHHHHHHHhhcCCCHHHHHH
Q 005098 416 KYCDMTLLSCAYAGTGNVLKVQN 438 (714)
Q Consensus 416 r~~~~~~~glayaGtGn~~~i~~ 438 (714)
..+...+|..|...|+.....+
T Consensus 261 -~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHH
Confidence 4455677888888888554433
No 162
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=33.14 E-value=3.1e+02 Score=30.25 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCCHHHHhhHHHHHhhhccCCCcHHHHHHHHHhhc
Q 005098 473 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 519 (714)
Q Consensus 473 ~~~~~~l~~L~~~~~~~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~ 519 (714)
+.+...+-.|+.+.|+.||..+.-+|..+|-+..-.+++|.|.++++
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHh
Confidence 44444444566777778888888888888777667777788877765
No 163
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=32.92 E-value=2.5e+02 Score=24.63 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.4
Q ss_pred HHHHhhcCCC
Q 005098 423 LSCAYAGTGN 432 (714)
Q Consensus 423 ~glayaGtGn 432 (714)
+|.+|...|+
T Consensus 113 lg~~~~~~g~ 122 (184)
T 3vtx_A 113 LGLVYDSMGE 122 (184)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 3444444444
No 164
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=31.37 E-value=1.8e+02 Score=29.42 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=36.1
Q ss_pred hcCCHHHHhhHHHHHhhhc--cCCCcHHHH---HHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 005098 484 QYGEQNIRRAVPLALGLLC--ISNPKVNVM---DTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 542 (714)
Q Consensus 484 ~~~~~~vr~g~~lALGl~~--aGt~~~~ai---~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt~n 542 (714)
.+.|+-+|.+++-.++-+. -|.+...++ ..+-+++.|+|..||.+|+-++.-+...-++
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 4455555555544443321 122234456 7788889999999999998888755543333
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=31.04 E-value=2.8e+02 Score=24.52 Aligned_cols=187 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHHHHHHHHHHHHHhcc
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISYAG 318 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGl~y~G 318 (714)
.+..|+.+++.+.+..+..........-..+|.-....|...+ +...+...+. .........+...+|.+|..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDE---ARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q ss_pred CCCH----hHHHHHHhhhcCCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH-HHhHhh
Q 005098 319 TQND----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL-GLGLLY 393 (714)
Q Consensus 319 s~~~----~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l-~lgLi~ 393 (714)
.++. +.++..+...............+-..+|.++.-.++.+.+...++...+..... .++.....++ .+|.++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLA 157 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Q ss_pred cCChh------hHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCH
Q 005098 394 LGKQE------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 433 (714)
Q Consensus 394 lG~~e------~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~ 433 (714)
...++ ..+..++.....+++....-.-..++...-.+++.
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-----
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhcccCC
No 166
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=30.69 E-value=1.4e+02 Score=26.33 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=63.4
Q ss_pred hhhcccchhhHHhhhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccC-CChHHHHHHHHHHHHH-hccCC
Q 005098 243 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGIS-YAGTQ 320 (714)
Q Consensus 243 lI~~~~~~~~l~~l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~-y~Gs~ 320 (714)
+...++.+++...+.+.+....... -+.+.+|.++... .+-+.++..+...+.. ++. ..+...+|.+ |...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcC
Confidence 3445677777777766654333332 3555566655432 2334566666665542 111 2345566766 65555
Q ss_pred C---HhHHHHHHhhhc-CCCChhHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc
Q 005098 321 N---DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR 372 (714)
Q Consensus 321 ~---~~i~e~L~~~l~-d~~~~~e~~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~ 372 (714)
+ ++..+.+...+. ++. .. .+-+.+|.++.-.++.+.+...+....+.
T Consensus 94 ~~~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSN-EI----TALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5 667777776664 332 22 35567788888888776665555554443
No 167
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=30.69 E-value=3.3e+02 Score=25.25 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=20.8
Q ss_pred hHHHHHHHhccC-CChHHHHHHHHHHHHHhccCCCH-hHHHHHHhhh
Q 005098 288 PALALLSEYVGR-EDACIRIGAIMGLGISYAGTQND-QIRHKLSTIL 332 (714)
Q Consensus 288 ~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~~-~i~e~L~~~l 332 (714)
.++..+...+.. +.......+.+.+|.+|...++- +..+.+...+
T Consensus 22 ~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 22 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 355555554431 22222334555566666555542 3444444444
No 168
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=30.23 E-value=7.9e+02 Score=29.51 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=59.1
Q ss_pred cccch-hHHHHHHhhcccchhhhhHHHHHHHHHh----cCCHHHHhhHHHHH-hh------hccCCCcHHHHHHHHHhhc
Q 005098 452 AYQGP-AVLGIAMVAMAEELGLEMAIRSLEHLLQ----YGEQNIRRAVPLAL-GL------LCISNPKVNVMDTLSRLSH 519 (714)
Q Consensus 452 ~vrr~-avl~lalI~~~~~~~~~~~~~~l~~L~~----~~~~~vr~g~~lAL-Gl------~~aGt~~~~ai~~L~~l~~ 519 (714)
+..+. +...+..++ +-+...+.++.+++.+.+ +.+. .|..+.--+ -+ ........++.+.+..++.
T Consensus 776 eL~~~~a~~~l~~ls-~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~ 853 (997)
T 1vsy_5 776 ALASLDPVRLYAGLG-YMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLY 853 (997)
T ss_dssp HHTTCCSHHHHHHTS-SSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTT
T ss_pred HHHhhHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc
Confidence 44555 444444443 333334566666766643 2334 555542221 11 1122334466788889999
Q ss_pred CCc-hHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHhhh
Q 005098 520 DTD-SEVAMAAVISLGLIGSGT-NNARIAGMLRNLSSYY 556 (714)
Q Consensus 520 D~~-~~Vr~~AiiAlGlV~aGt-~n~rv~~~lr~l~~~~ 556 (714)
|+. -+||..|.-.|+.+.-+. ....+..+..++.+..
T Consensus 854 D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 854 NEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred CCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999 999999999997665444 4344446666666654
No 169
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=29.78 E-value=2.8e+02 Score=26.95 Aligned_cols=99 Identities=17% Similarity=0.089 Sum_probs=62.1
Q ss_pred hhHHHHHHHhhhhhcccchhhHHh---hhhhccCCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhccCCChHHHHHH
Q 005098 232 HGKMSAAASLGMILLWDVDSGLAQ---IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 308 (714)
Q Consensus 232 ~~~~~a~aslGlI~~~~~~~~l~~---l~~yL~s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA 308 (714)
-.|.+.+.+|+=|..-|..-.-.+ |-..+.+++..-|..|+--+|.+.-++....-|-+.-|...|.+.++++|..|
T Consensus 122 kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSa 201 (253)
T 2db0_A 122 KTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA 201 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHH
T ss_pred cceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHH
Confidence 356667777777776655432222 23335577777777777666666544433344555566666778889999999
Q ss_pred HHHHHHHhccCCCHhHHHHHHhhh
Q 005098 309 IMGLGISYAGTQNDQIRHKLSTIL 332 (714)
Q Consensus 309 ~lGLGl~y~Gs~~~~i~e~L~~~l 332 (714)
.-.|+-+ .+.|+.+...+...+
T Consensus 202 VEtL~~l--A~~npklRkii~~kl 223 (253)
T 2db0_A 202 VEALVHL--ATLNDKLRKVVIKRL 223 (253)
T ss_dssp HHHHHHH--HTSCHHHHHHHHHHH
T ss_pred HHHHHHH--HHcCHHHHHHHHHHH
Confidence 9888864 455665555555444
No 170
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.70 E-value=2.4e+02 Score=30.12 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=56.9
Q ss_pred HHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHH---HHHHHHHhcCCHHHHhhHHHHHhhhc-------cCC
Q 005098 436 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAI---RSLEHLLQYGEQNIRRAVPLALGLLC-------ISN 505 (714)
Q Consensus 436 i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~---~~l~~L~~~~~~~vr~g~~lALGl~~-------aGt 505 (714)
..+|+.+..+. + ..+|+..+-=|+-++..+. +.++ ..+..|+++.++.|.+.++.|.+-+| +.+
T Consensus 65 l~~il~f~~d~-~--~~vRk~~a~FieEa~~~~~---el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~ 138 (386)
T 3o2t_A 65 LDEIIAFQADK-S--IEVRKFVIGFIEEACKRDI---ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKS 138 (386)
T ss_dssp HHHHHGGGGCS-C--HHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCC-c--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555432 1 1456555544555554444 4444 44556677888999888888888777 223
Q ss_pred Cc-----HHHHHHHHHh-------hcCCchHHHHHHH-HHHHHHcCCCC
Q 005098 506 PK-----VNVMDTLSRL-------SHDTDSEVAMAAV-ISLGLIGSGTN 541 (714)
Q Consensus 506 ~~-----~~ai~~L~~l-------~~D~~~~Vr~~Ai-iAlGlV~aGt~ 541 (714)
++ ..+.+.+..+ ....+..||.+|+ +....|.++|.
T Consensus 139 ~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~ 187 (386)
T 3o2t_A 139 RVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP 187 (386)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence 32 2444433322 3344567888777 77777776653
No 171
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=27.66 E-value=5.7e+02 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.037 Sum_probs=15.8
Q ss_pred hhccccEeEeecCCCCcceeeE
Q 005098 627 LAMQPRMLLTVDENLKPLSVPV 648 (714)
Q Consensus 627 lA~~Pr~li~~d~~l~~~~v~v 648 (714)
....|..++.+|.++....+.|
T Consensus 382 ~~~~p~~~~~~d~~~~~~~~~~ 403 (474)
T 4abn_A 382 EEKVPFTFGLVDSDGPCYAVMV 403 (474)
T ss_dssp TTCCSEEEEEESSSSCCEEEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEE
Confidence 4567888888888777665544
No 172
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=27.46 E-value=3.8e+02 Score=24.95 Aligned_cols=223 Identities=9% Similarity=-0.058 Sum_probs=0.0
Q ss_pred HHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhc-hhhhhhhhHHHHHHH
Q 005098 347 ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTF-NEKIRKYCDMTLLSC 425 (714)
Q Consensus 347 laLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~-~~~~~r~~~~~~~gl 425 (714)
+..|..+.-.++-+.+...++...+..+.. ......+|..+...|+-+.+...++..... +++-...-+...+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCC----STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Q ss_pred HhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhhhhHHHHHHHHHhcCCHHHHhhHHHHHh-hhccC
Q 005098 426 AYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALG-LLCIS 504 (714)
Q Consensus 426 ayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~~~~~~~l~~L~~~~~~~vr~g~~lALG-l~~aG 504 (714)
.|...|+.....+.+.-+.+...+ .......+|..+...++. +.+.+.++...... .-...+-..+| ..+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNF---PLAIQYMEKQIRPT--TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCH---HHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCH---HHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHH
Q ss_pred CCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC------CchHHHHHHHHHHhhhccChhHHHHHHHHHhhhhcCCC
Q 005098 505 NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT------NNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKG 578 (714)
Q Consensus 505 t~~~~ai~~L~~l~~D~~~~Vr~~AiiAlGlV~aGt------~n~rv~~~lr~l~~~~~~d~~~~~~~~lA~Gll~~G~g 578 (714)
..-.+|++.+.+......+.....-.++......|. --....+.++.....-..+.....-+...+|.++...|
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Q ss_pred cc
Q 005098 579 LL 580 (714)
Q Consensus 579 ~~ 580 (714)
+.
T Consensus 236 ~~ 237 (272)
T 3u4t_A 236 DK 237 (272)
T ss_dssp CH
T ss_pred CH
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=27.13 E-value=2.7e+02 Score=23.05 Aligned_cols=115 Identities=16% Similarity=0.075 Sum_probs=55.5
Q ss_pred hcccchhhHHhhhhhcc----CCCchhHHHHHHHHHHHhcCCCCChhhHHHHHHHhcc----CCChHHHHHHHHHHHHHh
Q 005098 245 LLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISY 316 (714)
Q Consensus 245 ~~~~~~~~l~~l~~yL~----s~~~~~~~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGl~y 316 (714)
..|+.++++..+.+-+. ..+....+-+...+|.++.... +-+.+...+...+. ..+......+...+|.++
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 99 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 99 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 35677777666655442 2344455556666666664332 23445555544332 233444455666677777
Q ss_pred ccCCCH-hHHHHHHhhhc---CCCChhHHHHHHHHHHHhHhcCCCCHHH
Q 005098 317 AGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEV 361 (714)
Q Consensus 317 ~Gs~~~-~i~e~L~~~l~---d~~~~~e~~~~AalaLGLi~lGs~~~~~ 361 (714)
...++. +..+.+...+. +.. .......+...+|.++...++.+.
T Consensus 100 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 100 TLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHH
Confidence 666553 33333333221 111 111122345556666655555433
No 174
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=27.06 E-value=3.1e+02 Score=23.77 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=5.9
Q ss_pred HHHHHHhhcCCC
Q 005098 421 TLLSCAYAGTGN 432 (714)
Q Consensus 421 ~~~glayaGtGn 432 (714)
+.+|..|...|+
T Consensus 35 ~~la~~y~~~~~ 46 (150)
T 4ga2_A 35 FYFAKLYYEAKE 46 (150)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344445555555
No 175
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=23.42 E-value=3.9e+02 Score=23.65 Aligned_cols=119 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCCHhHHHHHHhhhcCCCChhHH------HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHh
Q 005098 319 TQNDQIRHKLSTILNDAKSPLDV------IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLL 392 (714)
Q Consensus 319 s~~~~i~e~L~~~l~d~~~~~e~------~~~AalaLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi 392 (714)
+..+++.+.|...+.+...-.+. ..-+-+.+|.++...++-+-+...++.+....+.. ..-...+|..+.
T Consensus 6 ~~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~ 81 (151)
T 3gyz_A 6 TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQ 81 (151)
T ss_dssp ---CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q ss_pred hcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhc
Q 005098 393 YLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHC 443 (714)
Q Consensus 393 ~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~ 443 (714)
..|+-+++-...+.....+...... .+-+|.+|...|+.....+.+.-+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~--~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTP--VFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHH
No 176
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=23.29 E-value=2e+02 Score=30.95 Aligned_cols=179 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHhhchhhhhhhhHHHHHHHHhhcCCCHHHHHHHHhhccccCCCCccccchhHHHHHHhhcccchhh--
Q 005098 395 GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-- 472 (714)
Q Consensus 395 G~~e~~~~ll~~L~~~~~~~~r~~~~~~~glayaGtGn~~~i~~LL~~~~~~~~~~~~vrr~avl~lalI~~~~~~~~-- 472 (714)
.....++.+...|....+.-.-...-..++|..+|--|....+.+++-...+...+...=+.|..-+||-++.++-+.
T Consensus 13 ~~~~l~~~l~~~~~~s~~~~~~~npsvllaLrL~g~~~~~~e~~~l~~i~~~~~~~~s~G~LAlyiLAL~a~C~dp~~~~ 92 (399)
T 2pmv_A 13 AQEPLVNGIQVLMENSVTSSAYPNPSILIAMNLAGAYNLKAQKLLTYQLMSSDNNDLTIGHLGLTIMALTSSCRDPGDKV 92 (399)
T ss_dssp TTHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHCCSCHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHTTCCCTHHH
T ss_pred hhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHhcCcChhHHH
Q ss_pred hhHHHHHHHHH--hcCCH----HHHhhHHHHHhhhccCCCcHHHHHHHHHhhcC-CchHHHHHHHHHHHHHcCCC-----
Q 005098 473 EMAIRSLEHLL--QYGEQ----NIRRAVPLALGLLCISNPKVNVMDTLSRLSHD-TDSEVAMAAVISLGLIGSGT----- 540 (714)
Q Consensus 473 ~~~~~~l~~L~--~~~~~----~vr~g~~lALGl~~aGt~~~~ai~~L~~l~~D-~~~~Vr~~AiiAlGlV~aGt----- 540 (714)
.+..+.+.++- +.++| .-=.-+.|||-+....-....+-+++....+| ....|-..|+..|++..++.
T Consensus 93 ~~l~~e~~~i~~~~~~~p~t~~Yq~sL~vLALC~~~~~v~~~~v~kLl~~~~~~g~~~sVDT~AMa~LAL~C~~~~~~~~ 172 (399)
T 2pmv_A 93 SILQRQMENWAPSSPNAEASAFYGPSLAILALCQKNSEATLPIAVRFAKTLLANSSPFNVDTGAMATLALTCMYNKIPVG 172 (399)
T ss_dssp HHHHHHHHTCCCSCTTCCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHHHHHTBCCTT
T ss_pred HHHHHHHHhhcccCCCCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHhhccccc
Q ss_pred ---Cc-hHHHHHHHHHHhhh--ccChhHHHHHHHHHhhh
Q 005098 541 ---NN-ARIAGMLRNLSSYY--YKDANLLFCVRIAQGLV 573 (714)
Q Consensus 541 ---~n-~rv~~~lr~l~~~~--~~d~~~~~~~~lA~Gll 573 (714)
+. .++...++++.++. .+.++..||=..+-|+.
T Consensus 173 ~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn~yST~LA 211 (399)
T 2pmv_A 173 SEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLA 211 (399)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSSHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCCcccccccHHHH
No 177
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=22.57 E-value=5.4e+02 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=19.3
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhccC
Q 005098 293 LSEYVGREDACIRIGAIMGLGISYAGT 319 (714)
Q Consensus 293 L~~~L~~~~~~v~~gA~lGLGl~y~Gs 319 (714)
|.+-|.+++.-.|..|+-.|.-.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~ 40 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNS 40 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhC
Confidence 456677888888888888776655443
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=21.73 E-value=2.8e+02 Score=23.07 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=9.6
Q ss_pred HHHHhHhhcCChhhHHHHHH
Q 005098 386 PLGLGLLYLGKQESVEATAE 405 (714)
Q Consensus 386 ~l~lgLi~lG~~e~~~~ll~ 405 (714)
.+|..+...|+.+++...++
T Consensus 56 ~lg~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 56 SLGLTQAENEKDGLAIIALN 75 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 34444555555554444443
No 179
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.36 E-value=27 Score=31.29 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=42.8
Q ss_pred HHHHcCCChHHHHHHHHhcCChhhhHHH----hcccChHHHHHHHHHhcccCCCCCcHHHHHHH
Q 005098 9 AFHMKHNAEPEAVDLLMEVEDLDLLVEH----VDATNFKRTCLYLTSAAKYLPGPDDMLVLDIA 68 (714)
Q Consensus 9 ~~~~~~n~e~~AvdlllE~~~ld~i~~~----vd~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~ 68 (714)
+.|-+++-|+|||+.|-|+++.+..++. |+..+.++.+.=|..|-.++ .|+ -||+++
T Consensus 27 ~L~KkDkLykDAietAa~S~d~elaEeLL~yFVe~g~kEcF~A~LytCYdLl-rpD--vVLEla 87 (125)
T 3qil_A 27 ELAKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLL-RPD--VVLELA 87 (125)
T ss_dssp CCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSCSHHHHHHHHHHHTTCS-CTT--HHHHTT
T ss_pred HHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc-ChH--HHHHHH
Confidence 3456788999999999999997766664 56788888888777887655 554 466554
No 180
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=21.13 E-value=3.1e+02 Score=21.67 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHhHhhcCChhhHHHHHHHHhhchhhhhhhhHHHHHHHH
Q 005098 347 ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCA 426 (714)
Q Consensus 347 laLGLi~lGs~~~~~~e~Ll~~L~~~~~~~l~~~~~r~a~l~lgLi~lG~~e~~~~ll~~L~~~~~~~~r~~~~~~~gla 426 (714)
+.+|.++.-.++.+.+..++....+..+ .. ......+|..+...|+-+.+...++.......... .....+|..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~ 78 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP---RS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT---TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC---cc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHH
Confidence 4455555555555444444443332211 11 11222334444455665555555544332211111 122344556
Q ss_pred hhcCCCHHHHHH
Q 005098 427 YAGTGNVLKVQN 438 (714)
Q Consensus 427 yaGtGn~~~i~~ 438 (714)
|...|+.....+
T Consensus 79 ~~~~~~~~~A~~ 90 (136)
T 2fo7_A 79 YYKQGDYDEAIE 90 (136)
T ss_dssp HHTTTCHHHHHH
T ss_pred HHHhcCHHHHHH
Confidence 666776544333
Done!