Query 005099
Match_columns 714
No_of_seqs 407 out of 2957
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 18:02:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 2E-140 4E-145 1069.9 57.8 598 75-677 35-647 (663)
2 PLN03184 chloroplast Hsp70; Pr 100.0 1E-115 3E-120 1012.1 78.8 641 69-712 32-673 (673)
3 PTZ00009 heat shock 70 kDa pro 100.0 7E-110 2E-114 964.8 74.8 628 75-707 3-653 (653)
4 PRK13410 molecular chaperone D 100.0 3E-109 7E-114 955.5 74.6 599 75-673 1-603 (668)
5 PTZ00186 heat shock 70 kDa pre 100.0 5E-109 1E-113 950.1 72.8 598 75-675 26-627 (657)
6 PRK13411 molecular chaperone D 100.0 1E-108 2E-113 954.3 75.4 600 76-677 2-605 (653)
7 KOG0102 Molecular chaperones m 100.0 5E-111 1E-115 885.6 46.0 599 75-675 26-629 (640)
8 PTZ00400 DnaK-type molecular c 100.0 2E-108 5E-113 951.8 70.7 599 75-675 40-640 (663)
9 PRK00290 dnaK molecular chaper 100.0 4E-107 8E-112 942.1 76.0 597 76-674 2-598 (627)
10 CHL00094 dnaK heat shock prote 100.0 5E-107 1E-111 938.6 74.6 598 76-673 2-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 4E-105 9E-110 922.1 73.1 594 77-673 1-595 (595)
12 KOG0101 Molecular chaperones H 100.0 7E-107 2E-111 890.6 48.7 595 75-674 6-615 (620)
13 TIGR01991 HscA Fe-S protein as 100.0 6E-103 1E-107 899.0 73.5 584 78-674 1-586 (599)
14 PRK05183 hscA chaperone protei 100.0 7E-102 2E-106 891.6 73.1 583 75-674 18-602 (616)
15 PRK01433 hscA chaperone protei 100.0 2.7E-97 6E-102 846.3 70.0 553 75-666 18-572 (595)
16 COG0443 DnaK Molecular chapero 100.0 1.9E-96 4E-101 834.6 60.2 573 75-673 4-578 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 6.7E-94 1.4E-98 834.8 61.6 589 78-673 1-602 (602)
18 KOG0103 Molecular chaperones H 100.0 2.1E-86 4.5E-91 719.4 50.7 579 77-664 2-639 (727)
19 KOG0104 Molecular chaperones G 100.0 5.6E-75 1.2E-79 630.3 48.3 584 75-672 21-736 (902)
20 PRK11678 putative chaperone; P 100.0 3.5E-57 7.5E-62 499.9 37.2 339 77-451 1-448 (450)
21 PRK13928 rod shape-determining 100.0 4.5E-40 9.7E-45 355.0 35.1 310 79-451 6-324 (336)
22 PRK13929 rod-share determining 100.0 4.4E-39 9.5E-44 346.5 36.4 309 77-448 5-324 (335)
23 TIGR00904 mreB cell shape dete 100.0 7.6E-37 1.6E-41 329.6 35.4 309 79-450 5-327 (333)
24 PRK13927 rod shape-determining 100.0 7.6E-37 1.6E-41 330.0 35.2 308 77-450 6-324 (334)
25 PRK13930 rod shape-determining 100.0 9.5E-36 2.1E-40 321.7 35.1 312 76-450 8-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.8E-32 6.1E-37 287.6 23.9 310 77-449 2-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 1.7E-30 3.7E-35 265.7 24.2 202 185-446 37-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 8.5E-29 1.8E-33 250.9 28.5 316 76-452 6-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 1.4E-27 3.1E-32 248.4 29.7 202 187-448 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 2E-23 4.3E-28 228.5 27.7 195 222-447 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 1.3E-22 2.9E-27 224.8 27.1 195 226-450 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 6.8E-19 1.5E-23 190.5 25.2 205 213-451 159-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 8E-17 1.7E-21 176.6 19.8 308 78-450 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.7 7.8E-16 1.7E-20 169.0 19.4 305 77-450 2-347 (373)
35 COG4820 EutJ Ethanolamine util 99.7 3.7E-16 7.9E-21 147.7 10.0 196 192-447 76-271 (277)
36 PRK13917 plasmid segregation p 99.5 1.6E-12 3.5E-17 140.3 26.0 205 212-454 115-340 (344)
37 PTZ00280 Actin-related protein 99.5 5.8E-12 1.3E-16 140.0 27.2 292 76-427 4-337 (414)
38 PTZ00452 actin; Provisional 99.5 4.9E-12 1.1E-16 138.4 21.3 307 75-449 4-348 (375)
39 PF00022 Actin: Actin; InterP 99.5 3E-12 6.5E-17 141.6 19.9 310 76-450 4-367 (393)
40 PTZ00004 actin-2; Provisional 99.4 1.9E-11 4E-16 134.3 20.9 302 72-449 2-351 (378)
41 PTZ00281 actin; Provisional 99.4 1.6E-11 3.4E-16 134.7 19.6 304 77-450 7-350 (376)
42 TIGR01175 pilM type IV pilus a 99.4 3.9E-11 8.4E-16 130.6 22.1 179 221-448 141-347 (348)
43 PTZ00466 actin-like protein; P 99.3 8.2E-11 1.8E-15 129.0 21.3 302 77-449 13-353 (380)
44 TIGR03739 PRTRC_D PRTRC system 99.3 1.4E-10 3.1E-15 124.4 19.1 204 208-448 101-318 (320)
45 PF11104 PilM_2: Type IV pilus 99.3 9.1E-11 2E-15 127.1 16.8 200 196-448 93-339 (340)
46 PF06406 StbA: StbA protein; 99.1 3.8E-09 8.2E-14 113.2 16.7 173 238-445 141-316 (318)
47 KOG0679 Actin-related protein 99.0 3.9E-08 8.5E-13 102.5 19.7 182 77-312 12-202 (426)
48 TIGR00241 CoA_E_activ CoA-subs 98.9 3E-08 6.5E-13 102.5 17.4 170 241-446 73-247 (248)
49 COG4972 PilM Tfp pilus assembl 98.9 2.4E-07 5.3E-12 95.4 23.3 154 225-429 151-314 (354)
50 COG5277 Actin and related prot 98.8 6E-07 1.3E-11 99.4 21.5 194 78-313 8-205 (444)
51 PF07520 SrfB: Virulence facto 98.5 1.2E-05 2.5E-10 94.6 22.5 271 183-459 416-843 (1002)
52 PRK10719 eutA reactivating fac 98.5 1.2E-06 2.6E-11 95.6 11.9 83 210-303 89-183 (475)
53 TIGR03192 benz_CoA_bzdQ benzoy 98.4 2.3E-05 5E-10 81.5 20.6 71 376-450 217-288 (293)
54 COG1924 Activator of 2-hydroxy 98.4 1.6E-05 3.5E-10 83.7 19.2 73 374-450 317-390 (396)
55 TIGR03286 methan_mark_15 putat 98.4 2.3E-05 5E-10 84.6 19.2 71 375-449 331-402 (404)
56 TIGR02259 benz_CoA_red_A benzo 98.3 8.5E-06 1.8E-10 86.9 12.9 70 376-448 358-432 (432)
57 KOG0676 Actin and related prot 98.2 2.9E-05 6.3E-10 83.3 14.1 210 191-426 82-314 (372)
58 TIGR02261 benz_CoA_red_D benzo 98.1 0.00091 2E-08 68.8 24.0 71 375-448 187-262 (262)
59 PRK13317 pantothenate kinase; 98.1 0.0011 2.3E-08 69.5 24.5 48 402-449 222-273 (277)
60 KOG0797 Actin-related protein 97.8 0.00034 7.3E-09 76.0 13.7 155 181-349 194-355 (618)
61 PF08841 DDR: Diol dehydratase 97.7 0.00045 9.8E-09 70.0 11.8 194 232-448 105-329 (332)
62 COG4457 SrfB Uncharacterized p 97.5 0.021 4.6E-07 64.1 22.4 93 365-459 743-855 (1014)
63 PF06277 EutA: Ethanolamine ut 97.1 0.007 1.5E-07 66.7 13.4 85 211-300 87-177 (473)
64 PF01869 BcrAD_BadFG: BadF/Bad 97.0 0.28 6.1E-06 51.3 24.9 70 376-448 197-271 (271)
65 PF02782 FGGY_C: FGGY family o 96.6 0.0026 5.6E-08 63.1 5.1 76 374-450 120-196 (198)
66 KOG0677 Actin-related protein 96.5 0.065 1.4E-06 53.9 13.9 195 209-426 101-318 (389)
67 PRK15027 xylulokinase; Provisi 96.1 0.015 3.2E-07 66.4 8.0 79 376-454 360-438 (484)
68 KOG0680 Actin-related protein 96.0 0.57 1.2E-05 48.9 17.7 96 210-310 94-198 (400)
69 TIGR01315 5C_CHO_kinase FGGY-f 95.9 0.026 5.7E-07 65.2 8.8 83 370-453 411-493 (541)
70 COG1069 AraB Ribulose kinase [ 95.8 0.1 2.2E-06 58.3 12.5 218 226-454 232-482 (544)
71 PLN02669 xylulokinase 95.7 0.031 6.8E-07 64.7 8.7 72 377-450 421-492 (556)
72 TIGR00555 panK_eukar pantothen 95.4 0.22 4.8E-06 52.1 12.6 46 401-446 229-278 (279)
73 KOG0681 Actin-related protein 95.3 0.3 6.4E-06 54.3 13.5 124 183-314 90-218 (645)
74 PF14450 FtsA: Cell division p 95.3 0.043 9.4E-07 49.9 6.3 62 263-343 1-68 (120)
75 PRK00047 glpK glycerol kinase; 95.2 0.056 1.2E-06 61.9 8.3 78 375-453 375-453 (498)
76 TIGR01312 XylB D-xylulose kina 95.2 0.059 1.3E-06 61.3 8.5 78 375-453 362-440 (481)
77 PTZ00294 glycerol kinase-like 95.1 0.06 1.3E-06 61.7 8.4 78 376-454 379-457 (504)
78 TIGR01311 glycerol_kin glycero 95.1 0.053 1.1E-06 62.0 7.7 77 376-453 372-449 (493)
79 TIGR02628 fuculo_kin_coli L-fu 95.0 0.06 1.3E-06 61.1 7.9 78 375-453 365-443 (465)
80 PRK04123 ribulokinase; Provisi 95.0 0.059 1.3E-06 62.5 8.0 77 376-453 412-489 (548)
81 TIGR01234 L-ribulokinase L-rib 95.0 0.068 1.5E-06 61.8 8.3 76 377-453 410-486 (536)
82 PRK10331 L-fuculokinase; Provi 94.9 0.072 1.6E-06 60.5 8.0 77 376-453 362-439 (470)
83 PRK11031 guanosine pentaphosph 94.8 0.56 1.2E-05 53.6 15.0 76 224-305 93-171 (496)
84 smart00842 FtsA Cell division 94.7 0.065 1.4E-06 52.8 6.2 30 223-252 157-186 (187)
85 TIGR01314 gntK_FGGY gluconate 94.7 0.083 1.8E-06 60.6 7.9 78 375-453 373-451 (505)
86 PF14574 DUF4445: Domain of un 94.6 2.6 5.6E-05 46.7 19.0 58 365-423 291-348 (412)
87 PLN02295 glycerol kinase 94.6 0.09 1.9E-06 60.4 7.9 79 374-453 378-462 (512)
88 TIGR02627 rhamnulo_kin rhamnul 94.5 0.09 1.9E-06 59.5 7.7 75 378-454 362-437 (454)
89 KOG2517 Ribulose kinase and re 94.5 0.12 2.6E-06 57.9 8.4 78 376-454 387-465 (516)
90 COG4819 EutA Ethanolamine util 94.2 0.22 4.8E-06 52.0 8.8 85 211-300 89-179 (473)
91 PRK10939 autoinducer-2 (AI-2) 94.2 0.13 2.7E-06 59.3 8.0 77 376-453 382-459 (520)
92 PRK10854 exopolyphosphatase; P 94.1 0.86 1.9E-05 52.4 14.5 75 225-305 99-176 (513)
93 TIGR00744 ROK_glcA_fam ROK fam 93.9 4.6 0.0001 43.1 19.1 44 234-279 96-141 (318)
94 PRK10640 rhaB rhamnulokinase; 93.9 0.15 3.3E-06 57.9 7.8 76 377-454 349-425 (471)
95 COG1070 XylB Sugar (pentulose 93.8 1.3 2.8E-05 50.8 15.2 50 401-450 400-449 (502)
96 KOG2531 Sugar (pentulose and h 93.2 0.25 5.5E-06 53.8 7.5 55 395-450 435-489 (545)
97 PRK13321 pantothenate kinase; 93.1 5.3 0.00011 41.4 17.2 20 77-96 1-20 (256)
98 PRK14878 UGMP family protein; 92.9 7.1 0.00015 42.0 18.3 41 402-442 241-287 (323)
99 PRK09604 UGMP family protein; 92.9 5.6 0.00012 43.0 17.5 209 208-449 72-307 (332)
100 PF13941 MutL: MutL protein 92.4 0.82 1.8E-05 51.1 10.5 43 78-127 2-46 (457)
101 PF02541 Ppx-GppA: Ppx/GppA ph 90.5 1.1 2.3E-05 47.3 8.7 73 227-305 76-151 (285)
102 PF03702 UPF0075: Uncharacteri 90.5 0.84 1.8E-05 49.7 7.9 74 374-450 259-337 (364)
103 PRK09585 anmK anhydro-N-acetyl 90.3 2.6 5.6E-05 45.9 11.4 72 376-450 263-338 (365)
104 PRK09698 D-allose kinase; Prov 89.9 29 0.00062 36.7 21.2 42 235-278 104-146 (302)
105 TIGR00329 gcp_kae1 metallohydr 89.4 9.1 0.0002 40.8 14.7 38 384-426 245-282 (305)
106 PF14450 FtsA: Cell division p 89.1 0.13 2.8E-06 46.8 0.3 21 78-98 1-21 (120)
107 TIGR03281 methan_mark_12 putat 87.5 3 6.5E-05 43.7 9.0 58 403-462 263-323 (326)
108 TIGR03722 arch_KAE1 universal 87.4 45 0.00097 35.8 19.3 42 402-443 242-289 (322)
109 TIGR03706 exo_poly_only exopol 87.4 2.4 5.1E-05 45.2 8.6 108 189-305 53-164 (300)
110 PRK09557 fructokinase; Reviewe 87.3 43 0.00093 35.4 22.4 42 235-278 96-139 (301)
111 PRK09605 bifunctional UGMP fam 86.2 71 0.0015 36.9 21.0 52 402-453 245-302 (535)
112 PLN02666 5-oxoprolinase 85.9 9.5 0.00021 48.4 13.8 75 369-446 454-530 (1275)
113 KOG0681 Actin-related protein 85.9 1 2.2E-05 50.2 4.8 66 385-450 539-614 (645)
114 PRK14101 bifunctional glucokin 84.8 25 0.00055 41.6 16.3 50 377-426 244-296 (638)
115 COG2192 Predicted carbamoyl tr 84.8 79 0.0017 36.1 22.3 83 367-453 254-338 (555)
116 PRK12408 glucokinase; Provisio 84.5 64 0.0014 34.9 21.2 44 234-278 107-162 (336)
117 COG1548 Predicted transcriptio 84.4 4.7 0.0001 41.1 8.2 73 194-279 76-148 (330)
118 PRK00976 hypothetical protein; 84.2 7 0.00015 41.7 10.0 58 402-461 263-322 (326)
119 KOG1385 Nucleoside phosphatase 83.3 3.7 8E-05 44.7 7.5 156 75-279 66-231 (453)
120 PF07318 DUF1464: Protein of u 83.2 14 0.0003 39.7 11.7 71 380-454 242-319 (343)
121 PF01968 Hydantoinase_A: Hydan 82.8 0.76 1.6E-05 48.7 2.2 42 238-279 54-95 (290)
122 COG0248 GppA Exopolyphosphatas 81.8 9.5 0.00021 43.4 10.5 93 188-280 52-148 (492)
123 COG5026 Hexokinase [Carbohydra 80.3 17 0.00037 40.1 11.2 26 75-100 74-102 (466)
124 COG1521 Pantothenate kinase ty 79.9 78 0.0017 32.7 16.5 45 371-415 181-225 (251)
125 COG2377 Predicted molecular ch 78.9 23 0.0005 38.3 11.5 181 250-451 152-344 (371)
126 COG0554 GlpK Glycerol kinase [ 78.4 6.9 0.00015 43.5 7.7 86 367-453 365-452 (499)
127 PF02543 CmcH_NodU: Carbamoylt 78.2 24 0.00052 38.6 11.9 82 367-453 131-216 (360)
128 PTZ00107 hexokinase; Provision 77.9 1.3E+02 0.0028 34.1 23.4 57 217-273 189-249 (464)
129 PF08735 DUF1786: Putative pyr 72.2 33 0.0007 35.4 10.2 99 206-309 111-213 (254)
130 PF00370 FGGY_N: FGGY family o 72.0 4.1 8.8E-05 41.8 3.9 19 77-95 1-19 (245)
131 COG0145 HyuA N-methylhydantoin 71.2 4.5 9.7E-05 47.7 4.3 41 238-279 254-296 (674)
132 PTZ00009 heat shock 70 kDa pro 70.9 18 0.00039 43.0 9.4 37 603-643 567-603 (653)
133 PRK03011 butyrate kinase; Prov 70.4 16 0.00036 39.8 8.2 46 402-447 295-344 (358)
134 PLN02920 pantothenate kinase 1 69.0 26 0.00056 38.4 9.2 49 401-449 296-351 (398)
135 COG1382 GimC Prefoldin, chaper 67.3 98 0.0021 28.0 11.3 78 599-677 23-113 (119)
136 TIGR00143 hypF [NiFe] hydrogen 66.4 12 0.00026 44.7 6.6 48 402-449 658-711 (711)
137 PTZ00340 O-sialoglycoprotein e 65.7 1E+02 0.0022 33.5 12.9 39 383-426 249-287 (345)
138 smart00732 YqgFc Likely ribonu 64.3 6.2 0.00014 33.9 2.9 19 77-95 2-20 (99)
139 COG1940 NagC Transcriptional r 64.2 78 0.0017 33.6 11.9 36 235-271 106-143 (314)
140 COG1070 XylB Sugar (pentulose 60.6 9.1 0.0002 43.9 4.1 22 75-96 3-24 (502)
141 PTZ00294 glycerol kinase-like 60.0 8.4 0.00018 44.2 3.7 20 76-95 2-21 (504)
142 COG4012 Uncharacterized protei 59.9 63 0.0014 33.3 9.2 90 216-314 186-278 (342)
143 PRK10939 autoinducer-2 (AI-2) 59.2 9 0.00019 44.1 3.8 21 75-95 2-22 (520)
144 PF03652 UPF0081: Uncharacteri 58.8 9.9 0.00021 35.3 3.3 20 77-96 2-21 (135)
145 cd06007 R3H_DEXH_helicase R3H 58.5 26 0.00057 27.5 5.1 37 201-239 8-44 (59)
146 TIGR03723 bact_gcp putative gl 58.5 2.6E+02 0.0056 29.9 20.5 44 402-445 259-308 (314)
147 PTZ00288 glucokinase 1; Provis 57.3 68 0.0015 35.7 10.1 21 75-95 25-45 (405)
148 TIGR03123 one_C_unchar_1 proba 54.9 8.7 0.00019 41.1 2.5 21 260-280 127-147 (318)
149 PRK10331 L-fuculokinase; Provi 53.2 13 0.00028 42.2 3.8 19 77-95 3-21 (470)
150 TIGR02628 fuculo_kin_coli L-fu 52.9 13 0.00028 42.2 3.7 19 77-95 2-20 (465)
151 PRK04123 ribulokinase; Provisi 52.3 13 0.00029 43.0 3.8 19 76-94 3-21 (548)
152 cd00529 RuvC_resolvase Hollida 51.3 19 0.00041 34.2 4.0 18 77-94 1-18 (154)
153 PRK15027 xylulokinase; Provisi 50.0 13 0.00029 42.3 3.3 19 77-95 1-19 (484)
154 PLN00130 succinate dehydrogena 49.9 2.8 6E-05 40.0 -1.9 26 72-97 53-78 (213)
155 cd02640 R3H_NRF R3H domain of 49.8 47 0.001 26.2 5.3 41 198-239 5-45 (60)
156 TIGR00016 ackA acetate kinase. 49.1 2.5E+02 0.0053 31.2 12.5 45 379-426 307-352 (404)
157 PRK13310 N-acetyl-D-glucosamin 48.4 2.1E+02 0.0046 30.1 12.0 44 234-279 95-140 (303)
158 PRK00109 Holliday junction res 48.1 18 0.00039 33.7 3.2 21 75-95 3-23 (138)
159 TIGR01314 gntK_FGGY gluconate 48.0 15 0.00033 42.0 3.3 19 77-95 1-19 (505)
160 TIGR01234 L-ribulokinase L-rib 47.9 17 0.00038 42.0 3.8 18 77-94 2-19 (536)
161 PLN02362 hexokinase 47.9 45 0.00098 38.2 6.9 48 225-274 208-257 (509)
162 KOG0678 Actin-related protein 47.8 3.9E+02 0.0084 28.7 13.2 98 210-311 107-209 (415)
163 PRK00047 glpK glycerol kinase; 47.3 19 0.0004 41.3 3.9 20 76-95 5-24 (498)
164 PLN02295 glycerol kinase 46.2 17 0.00037 41.7 3.4 19 77-95 1-19 (512)
165 PF03646 FlaG: FlaG protein; 46.1 33 0.00072 30.2 4.5 45 540-591 54-99 (107)
166 PF06160 EzrA: Septation ring 46.0 2.1E+02 0.0046 33.3 12.2 88 578-668 114-207 (560)
167 PRK07058 acetate kinase; Provi 46.0 2.1E+02 0.0045 31.7 11.3 45 378-426 298-343 (396)
168 TIGR01315 5C_CHO_kinase FGGY-f 45.2 18 0.0004 41.8 3.4 18 78-95 2-19 (541)
169 TIGR01311 glycerol_kin glycero 45.1 19 0.00041 41.2 3.5 19 77-95 2-20 (493)
170 KOG1369 Hexokinase [Carbohydra 44.8 42 0.0009 37.9 5.9 64 216-281 185-251 (474)
171 KOG2708 Predicted metalloprote 43.8 1.6E+02 0.0034 29.8 9.0 42 380-426 237-278 (336)
172 PRK00039 ruvC Holliday junctio 43.6 20 0.00043 34.5 2.8 19 76-94 2-20 (164)
173 COG0816 Predicted endonuclease 43.2 24 0.00051 33.1 3.1 21 76-96 2-22 (141)
174 PF14574 DUF4445: Domain of un 42.9 86 0.0019 34.9 7.9 55 374-428 55-109 (412)
175 smart00030 CLb CLUSTERIN Beta 42.8 3.3E+02 0.0072 26.9 10.8 52 612-668 31-84 (206)
176 PRK13318 pantothenate kinase; 42.7 25 0.00054 36.4 3.6 20 78-97 2-21 (258)
177 PF03904 DUF334: Domain of unk 42.4 3E+02 0.0065 27.8 10.7 12 575-586 39-50 (230)
178 PF01150 GDA1_CD39: GDA1/CD39 41.9 1.1E+02 0.0023 34.4 8.8 21 260-280 163-183 (434)
179 cd02641 R3H_Smubp-2_like R3H d 41.5 67 0.0015 25.3 5.0 41 198-239 5-45 (60)
180 PLN02596 hexokinase-like 40.8 4.7E+02 0.01 29.9 13.5 58 221-280 204-263 (490)
181 PLN02914 hexokinase 38.8 93 0.002 35.5 7.6 53 224-278 207-261 (490)
182 COG3426 Butyrate kinase [Energ 38.3 96 0.0021 32.4 6.8 47 400-446 294-344 (358)
183 cd02646 R3H_G-patch R3H domain 38.1 67 0.0015 25.0 4.5 41 196-239 3-43 (58)
184 PLN02377 3-ketoacyl-CoA syntha 38.1 89 0.0019 35.8 7.3 72 374-445 165-240 (502)
185 PLN02405 hexokinase 36.8 1.4E+02 0.0031 34.0 8.7 52 224-277 207-260 (497)
186 COG0533 QRI7 Metal-dependent p 36.7 85 0.0019 33.8 6.4 51 371-426 231-285 (342)
187 PF07820 TraC: TraC-like prote 36.2 2E+02 0.0044 24.7 7.2 19 658-676 46-64 (92)
188 COG2971 Predicted N-acetylgluc 35.9 5.6E+02 0.012 27.2 20.9 65 380-451 227-292 (301)
189 PLN02669 xylulokinase 35.3 36 0.00078 39.6 3.8 21 75-95 7-27 (556)
190 PRK05082 N-acetylmannosamine k 34.8 1.1E+02 0.0024 32.0 7.2 48 402-449 233-287 (291)
191 PRK04778 septation ring format 34.8 3.7E+02 0.0081 31.4 12.0 87 578-667 118-210 (569)
192 PRK12440 acetate kinase; Revie 34.8 3.8E+02 0.0082 29.7 11.2 45 378-426 300-345 (397)
193 PF02075 RuvC: Crossover junct 34.3 56 0.0012 30.8 4.3 24 78-101 1-26 (149)
194 PRK08868 flagellar protein Fla 34.3 1E+02 0.0022 28.9 5.7 44 540-590 88-132 (144)
195 PLN03170 chalcone synthase; Pr 33.9 1.2E+02 0.0025 33.8 7.3 53 379-431 104-157 (401)
196 COG2441 Predicted butyrate kin 33.6 1.7E+02 0.0037 30.5 7.7 54 401-454 272-336 (374)
197 PRK11637 AmiB activator; Provi 33.0 4.8E+02 0.01 29.1 12.2 66 604-674 69-136 (428)
198 PRK13320 pantothenate kinase; 32.9 50 0.0011 34.0 3.9 22 76-97 2-23 (244)
199 PRK13331 pantothenate kinase; 32.9 51 0.0011 34.0 4.0 23 75-97 6-28 (251)
200 COG5185 HEC1 Protein involved 32.8 4.6E+02 0.01 29.4 11.1 70 578-647 280-362 (622)
201 PF01765 RRF: Ribosome recycli 32.8 3.1E+02 0.0067 26.2 9.2 61 574-643 85-147 (165)
202 PF11336 DUF3138: Protein of u 32.8 95 0.0021 34.2 6.0 30 650-679 27-56 (514)
203 KOG2008 BTK-associated SH3-dom 32.7 6.2E+02 0.014 26.8 13.4 25 649-673 209-233 (426)
204 PRK13310 N-acetyl-D-glucosamin 32.7 1.4E+02 0.003 31.5 7.5 48 401-448 244-300 (303)
205 PLN03173 chalcone synthase; Pr 32.6 1.3E+02 0.0028 33.3 7.4 51 380-430 101-152 (391)
206 PTZ00297 pantothenate kinase; 32.4 1.5E+02 0.0033 38.6 8.9 49 400-448 1389-1444(1452)
207 TIGR02707 butyr_kinase butyrat 32.3 1.2E+02 0.0026 33.0 7.0 65 378-445 272-340 (351)
208 PLN03172 chalcone synthase fam 31.8 1.3E+02 0.0029 33.2 7.3 53 379-431 100-153 (393)
209 COG1334 FlaG Uncharacterized f 31.7 1.1E+02 0.0024 27.7 5.4 41 541-588 67-108 (120)
210 PF00480 ROK: ROK family; Int 31.7 1.9E+02 0.0041 27.5 7.7 86 185-278 31-134 (179)
211 PF08392 FAE1_CUT1_RppA: FAE1/ 31.3 1.3E+02 0.0028 31.7 6.6 45 385-429 87-132 (290)
212 PRK13326 pantothenate kinase; 31.1 52 0.0011 34.3 3.7 23 75-97 5-27 (262)
213 PF00871 Acetate_kinase: Aceto 30.4 5.8E+02 0.013 28.2 11.9 46 378-426 299-345 (388)
214 PHA03185 UL14 tegument protein 30.2 1.8E+02 0.0039 28.6 6.8 33 588-620 67-99 (214)
215 PF00349 Hexokinase_1: Hexokin 30.0 62 0.0013 32.4 3.9 28 260-287 62-90 (206)
216 PRK07738 flagellar protein Fla 29.8 1.4E+02 0.003 27.0 5.7 44 541-591 64-108 (117)
217 PRK09174 F0F1 ATP synthase sub 29.7 5.5E+02 0.012 25.6 10.6 18 602-619 115-132 (204)
218 TIGR03042 PS_II_psbQ_bact phot 29.6 4.8E+02 0.01 24.5 11.3 73 575-647 29-110 (142)
219 PLN03168 chalcone synthase; Pr 28.6 1.5E+02 0.0033 32.7 7.2 55 377-431 97-152 (389)
220 PRK09343 prefoldin subunit bet 28.4 3.9E+02 0.0085 24.2 8.6 43 629-672 67-109 (121)
221 COG3679 Regulatory protein inv 28.2 4.6E+02 0.0099 23.8 10.7 92 579-672 10-105 (118)
222 PRK13848 conjugal transfer pro 27.3 4E+02 0.0088 22.9 9.7 21 658-678 47-67 (98)
223 PF00349 Hexokinase_1: Hexokin 27.2 56 0.0012 32.7 3.1 35 221-255 167-204 (206)
224 TIGR00250 RNAse_H_YqgF RNAse H 26.8 40 0.00086 31.1 1.8 17 79-95 1-17 (130)
225 PRK08452 flagellar protein Fla 26.6 1.7E+02 0.0036 26.8 5.7 43 541-590 71-114 (124)
226 KOG2196 Nuclear porin [Nuclear 26.6 4.5E+02 0.0097 26.9 9.1 38 628-666 214-251 (254)
227 PF00815 Histidinol_dh: Histid 26.1 1.2E+02 0.0026 33.7 5.5 48 209-256 137-185 (412)
228 cd00520 RRF Ribosome recycling 26.1 5E+02 0.011 25.3 9.4 61 574-643 99-161 (179)
229 PRK00292 glk glucokinase; Prov 26.0 63 0.0014 34.4 3.5 44 234-278 89-144 (316)
230 KOG2517 Ribulose kinase and re 25.4 1.5E+02 0.0033 33.9 6.3 20 75-94 5-24 (516)
231 COG0233 Frr Ribosome recycling 25.4 6.4E+02 0.014 24.8 9.7 63 574-643 105-167 (187)
232 TIGR00067 glut_race glutamate 25.2 1.5E+02 0.0031 30.7 5.8 41 402-445 172-212 (251)
233 PRK06231 F0F1 ATP synthase sub 25.0 6.5E+02 0.014 25.1 10.2 71 602-672 110-180 (205)
234 PRK00488 pheS phenylalanyl-tRN 25.0 6.3E+02 0.014 27.4 10.6 34 625-662 48-81 (339)
235 PLN02854 3-ketoacyl-CoA syntha 24.6 2.1E+02 0.0044 33.0 7.3 56 367-429 181-237 (521)
236 KOG0797 Actin-related protein 24.3 23 0.0005 39.7 -0.3 67 385-452 510-591 (618)
237 COG2410 Predicted nuclease (RN 24.0 1.2E+02 0.0027 29.1 4.4 31 77-107 2-33 (178)
238 PF07865 DUF1652: Protein of u 24.0 2.6E+02 0.0057 22.8 5.7 48 541-589 15-65 (69)
239 PF06008 Laminin_I: Laminin Do 23.8 5.7E+02 0.012 26.4 10.0 73 575-647 119-203 (264)
240 KOG1794 N-Acetylglucosamine ki 23.6 1.9E+02 0.004 30.6 6.0 48 405-452 266-318 (336)
241 PF05957 DUF883: Bacterial pro 23.3 4.7E+02 0.01 22.3 9.2 66 579-648 5-72 (94)
242 PF10458 Val_tRNA-synt_C: Valy 23.2 2E+02 0.0044 22.9 5.1 37 607-643 15-53 (66)
243 cd02639 R3H_RRM R3H domain of 23.1 2E+02 0.0043 22.7 4.8 31 210-240 16-46 (60)
244 smart00787 Spc7 Spc7 kinetocho 23.0 8.9E+02 0.019 25.9 11.3 80 575-662 200-285 (312)
245 TIGR00496 frr ribosome recycli 22.6 7.2E+02 0.016 24.2 9.9 61 574-643 94-156 (176)
246 COG2433 Uncharacterized conser 22.5 7.1E+02 0.015 29.0 10.7 59 597-661 448-508 (652)
247 PF02970 TBCA: Tubulin binding 22.4 3.6E+02 0.0078 23.1 6.7 66 581-647 9-77 (90)
248 PF10168 Nup88: Nuclear pore c 22.4 1.1E+03 0.024 28.4 13.1 17 654-670 645-661 (717)
249 PF07729 FCD: FCD domain; Int 22.1 4.2E+02 0.0091 22.6 7.7 41 612-652 2-47 (125)
250 cd06572 Histidinol_dh Histidin 22.0 2.1E+02 0.0046 31.6 6.5 48 209-256 123-171 (390)
251 PRK14878 UGMP family protein; 21.7 2.5E+02 0.0053 30.2 7.0 66 378-444 41-112 (323)
252 KOG0103 Molecular chaperones H 21.6 3.2E+02 0.0069 32.3 7.9 41 630-670 671-725 (727)
253 PF15466 DUF4635: Domain of un 21.2 1.3E+02 0.0028 26.9 3.7 20 628-647 104-123 (135)
254 PF12401 DUF3662: Protein of u 21.2 3.2E+02 0.007 24.5 6.5 65 325-401 27-94 (116)
255 TIGR03722 arch_KAE1 universal 21.1 2.4E+02 0.0051 30.3 6.7 65 379-444 43-113 (322)
256 PF03484 B5: tRNA synthetase B 21.1 3.1E+02 0.0067 22.0 5.8 56 140-195 8-66 (70)
257 PF15290 Syntaphilin: Golgi-lo 21.0 5.7E+02 0.012 26.7 8.7 18 600-617 86-103 (305)
258 COG5026 Hexokinase [Carbohydra 21.0 96 0.0021 34.4 3.5 30 259-288 73-103 (466)
259 PF08006 DUF1700: Protein of u 20.4 3.1E+02 0.0067 26.5 6.8 54 610-670 5-63 (181)
260 COG0848 ExbD Biopolymer transp 20.2 6.5E+02 0.014 23.3 8.5 76 162-248 61-136 (137)
261 PF02801 Ketoacyl-synt_C: Beta 20.2 85 0.0018 28.1 2.6 47 382-428 24-72 (119)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-140 Score=1069.88 Aligned_cols=598 Identities=52% Similarity=0.825 Sum_probs=579.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.|||||||||||||+++++|+++||.|++|+|.+||+|+|+++ +|++|++|++|...||+||+++.||||||.+++
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 789999999999999999999999999999999999999999999 999999999999999999999999999999996
Q ss_pred -hhhhhccceeEEEEcC-CCcEEEEeC-CCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDE-NGNVKLECP-AIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~-~g~~~v~~~-~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
+|.++++|||++++.. ...+.|.+. ++.+.|+||||++|+|.++++.|+.|+|.+++++|+||||||+++||+++++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 9999999999999743 345667766 4578999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l 309 (714)
|..+|||+++++||||+|||++|++++++ .+++||||+||||||||++.+++|+|+|+++.||.+|||+|||+++++|+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 99999999999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 005099 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPV 389 (714)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i 389 (714)
...|+++++.|++++.+++++|+++||+||+.||+..++.++|++++++ .+|+-++||..||++.-++|.++..++
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~TlkPv 349 (663)
T KOG0100|consen 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLKPV 349 (663)
T ss_pred HHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-CCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEeeccC
Q 005099 390 ETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-GREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPL 466 (714)
Q Consensus 390 ~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-g~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv~~~ 466 (714)
+++|+++++.+.+|+.|+|||||+|||.||++|+++| |+++.+.+|||||||+|||+||..|||. ..++++.|++|+
T Consensus 350 ~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pL 429 (663)
T KOG0100|consen 350 QKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPL 429 (663)
T ss_pred HHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccc
Confidence 9999999999999999999999999999999999999 8999999999999999999999999997 689999999999
Q ss_pred CcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEE
Q 005099 467 SLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 546 (714)
Q Consensus 467 slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~ 546 (714)
++|||+.+|.|+.+||||+.||+++++.|++..|+|+.+.|++|+|||.+.++|+.||.|.|.||||+|+|.|+|+|+|+
T Consensus 430 tlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFe 509 (663)
T KOG0100|consen 430 TLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFE 509 (663)
T ss_pred cceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH---h
Q 005099 547 IDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE---L 622 (714)
Q Consensus 547 id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~---~ 622 (714)
+|.||||+|++.|+.+|++.+|+|+++ +.|++|+|++|++++++|+++|+..++++++||+||+|.|.+++++.+ +
T Consensus 510 vDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekL 589 (663)
T KOG0100|consen 510 VDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKL 589 (663)
T ss_pred EccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHh
Confidence 999999999999999999999999999 899999999999999999999999999999999999999999999976 6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005099 623 GDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQPGA 677 (714)
Q Consensus 623 ~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 677 (714)
..++++++++.+.+++++..+||+.+ +.++|++++++|+..+.||.+++|+.+|+
T Consensus 590 g~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 590 GGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 68999999999999999999999964 69999999999999999999999996433
No 2
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.4e-115 Score=1012.08 Aligned_cols=641 Identities=93% Similarity=1.292 Sum_probs=602.1
Q ss_pred CCccccCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 69 GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 69 ~~~~~~~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
+|++..++.+||||||||||+||++++|++++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||
T Consensus 32 ~~~~~~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG 111 (673)
T PLN03184 32 GPLRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIG 111 (673)
T ss_pred CCccccCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhC
Confidence 68888888999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
+++.+++.+.+.|||.++.+.++.+.+.++..++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 112 ~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 191 (673)
T PLN03184 112 RKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTAT 191 (673)
T ss_pred CCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 99998888889999999998888888877666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 229 KDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 229 ~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
++||++|||++++||+||+|||++|+.....+.++|||||||||||+||+++.++.++|+++.|+.+|||++||+.|++|
T Consensus 192 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~ 271 (673)
T PLN03184 192 KDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 271 (673)
T ss_pred HHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999887778899999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+.++|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+.+++.+++++|||++||++|+++++++..+
T Consensus 272 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~ 351 (673)
T PLN03184 272 LASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTP 351 (673)
T ss_pred HHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999998998888899999999999999999999999999998877654445578999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCc
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSL 468 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~sl 468 (714)
|+++|+++++.+.+|+.|+||||+||||.|+++|+++||.++...+||+++||+|||++|+++++.++++.+.|++|++|
T Consensus 352 i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~sl 431 (673)
T PLN03184 352 VENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSL 431 (673)
T ss_pred HHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccc
Confidence 99999999999999999999999999999999999999998999999999999999999999999889999999999999
Q ss_pred ceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEec
Q 005099 469 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548 (714)
Q Consensus 469 gi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id 548 (714)
|+++.++.+.+|||+|++||++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.++|+++.|.++|+|+|++|
T Consensus 432 gi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id 511 (673)
T PLN03184 432 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 511 (673)
T ss_pred eEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCH
Q 005099 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPA 628 (714)
Q Consensus 549 ~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~ 628 (714)
.||+|+|++.+..++++.+++|.....|+++++++++++++++..+|++.+++.++||+||+|||.+|++|+++.+++++
T Consensus 512 ~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~ 591 (673)
T PLN03184 512 ANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPA 591 (673)
T ss_pred CCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCH
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999878889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCeee
Q 005099 629 EVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGA-SDSSNKGQDGDVID 707 (714)
Q Consensus 629 ~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 707 (714)
++++++.+.|+++++||+.++.+++++++++|.+.+.++..++|..+|++| +||+||++.+. +++++.|.++||||
T Consensus 592 eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (673)
T PLN03184 592 DVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGG---AGPAPGGEAGSSSSSSSGGDGDDVID 668 (673)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCcccccCCCCCCCCCCCCCceec
Confidence 999999999999999999999999999999999999999999997655543 45666654432 22333444677999
Q ss_pred cccee
Q 005099 708 ADFTD 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
|||+|
T Consensus 669 ~~~~~ 673 (673)
T PLN03184 669 ADFTD 673 (673)
T ss_pred cccCC
Confidence 99986
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=7.4e-110 Score=964.82 Aligned_cols=628 Identities=47% Similarity=0.766 Sum_probs=579.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.+||||||||||+||++++|.+++++|..|+|.+||+|+|.++ ++++|+.|+.+...+|.++++++||+||+.+++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 456999999999999999999999999999999999999999876 899999999999999999999999999999885
Q ss_pred -hhhhhccceeEEEEcCCCcEE--EEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVK--LECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~--v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
++...+.|||.++.+.++... +.+.++.+.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 788888999999887777544 45555567899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccCC--CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKKN--NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~~--~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
||++|||++++||+||+|||++|+..... +.++|||||||||||+||+++.++.++++++.|+.++||++||..|++|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999986532 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcccccc-CCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDE-GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKT 387 (714)
Q Consensus 309 l~~~~~~~~-~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~ 387 (714)
+.++|+.++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.++++ .+++++|||++||++|+|+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~~ 317 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTLQ 317 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHHH
Confidence 999998766 46777889999999999999999999999999999887765 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-CCCCcCCCChhHHHhHHHHHHhHhhCC----CCCcEEEe
Q 005099 388 PVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-REPNVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLD 462 (714)
Q Consensus 388 ~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ls~~----~~~~~~~d 462 (714)
+|+++|+++++++.+|+.|+||||+||||+|+++|+++|+ .++..++||+++||+|||++|+++++. ++++.+.|
T Consensus 318 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~d 397 (653)
T PTZ00009 318 PVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLD 397 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEe
Confidence 9999999999999999999999999999999999999995 578899999999999999999999874 57899999
Q ss_pred eccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeE
Q 005099 463 VTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 542 (714)
Q Consensus 463 v~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~ 542 (714)
++|++||++..++.+.+|||+|++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+
T Consensus 398 v~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 477 (653)
T PTZ00009 398 VTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477 (653)
T ss_pred ecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005099 543 VKFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE 621 (714)
Q Consensus 543 v~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~ 621 (714)
|+|++|.||+|+|++.++.++++..++|... ..|++++++++++++.++..+|+..+++.+++|+||+|||++|++|++
T Consensus 478 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~ 557 (653)
T PTZ00009 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQD 557 (653)
T ss_pred EEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999988755 679999999999999999999999999999999999999999999974
Q ss_pred --hccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCCCC----CCCC
Q 005099 622 --LGDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQPGAG-AAPGAGPTP----GAEA 691 (714)
Q Consensus 622 --~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~----~~~~ 691 (714)
+.+++++++++++.+.++++++||+++ +.++|++++++|++.++|+..|+|..++|| |+||+||-| |+++
T Consensus 558 ~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (653)
T PTZ00009 558 EKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAG 637 (653)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCC
Confidence 788999999999999999999999975 588999999999999999999999776665 555555555 3333
Q ss_pred CCCCCCCCCCCCCeee
Q 005099 692 GASDSSNKGQDGDVID 707 (714)
Q Consensus 692 ~~~~~~~~~~~~~~~~ 707 (714)
+|.+++++||++|++|
T Consensus 638 ~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 638 PAGAGASSGPTVEEVD 653 (653)
T ss_pred CCCCCCCCCCccccCC
Confidence 3344566899998876
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.4e-109 Score=955.52 Aligned_cols=599 Identities=61% Similarity=0.993 Sum_probs=570.6
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
|+.+||||||||||+||++++|++.+|+|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~ 80 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDEL 80 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhh
Confidence 35799999999999999999999999999999999999999987779999999999999999999999999999999888
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+.+.+.+||.+..+++|.+.+.++..++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||++|++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 160 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRI 160 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 88889999999998889888887766789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
|||++++||+||+|||++|+.+...+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++|+.++|.
T Consensus 161 AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999987778899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLR 394 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~ 394 (714)
.+++.++..+++++.+|+.+||++|+.||.+..+.+.++++..+.+++.++.++|||++||++|+++++++..+|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999988766556678899999999999999999999999999999
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeC
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLG 474 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~ 474 (714)
++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++..+++.+.|++|++||+++.+
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceecC
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEE
Q 005099 475 GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 554 (714)
Q Consensus 475 ~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~ 554 (714)
|.+.+|||||++||++++.+|++..|+|+.+.|+||||++....+|..||+|.|.++|+.|.|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH----hccCCCHHH
Q 005099 555 VSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE----LGDKVPAEV 630 (714)
Q Consensus 555 v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~----~~~~~~~~~ 630 (714)
|++.++.||++..++|.....|+++|+++++++++++..+|+..+++.++||++|+|||+++++|.+ +.+++++++
T Consensus 481 V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~ 560 (668)
T PRK13410 481 VSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQ 560 (668)
T ss_pred EEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH
Confidence 9999999999999999877889999999999999999999999999999999999999999999964 667899999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 631 KGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 631 ~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
++++...|+++++||++++.+.+++++++|.+.+.++...++.
T Consensus 561 ~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 603 (668)
T PRK13410 561 RRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRA 603 (668)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888887777766543
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.7e-109 Score=950.06 Aligned_cols=598 Identities=51% Similarity=0.838 Sum_probs=568.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
++.+||||||||||+||++++|++++++|..|.+.+||+|+|.++ ++++|..|+.+...+|.++++++||+||+.+++
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 447999999999999999999999999999999999999999876 789999999999999999999999999999875
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++...+.|||.++.+.++...+... .++.++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~-~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDG-NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeC-CCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 7888899999999888887777653 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++|||++++||+||+|||++|+.+...+.++|||||||||||+||+++.++.++|+++.|+.+|||+|||+.|++|+.++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999998876688999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|+.+++.++..+++++.+|+.+||++|+.||...++.+.++++..+.+|..++.++|||++||++|+|+++++..+++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989888999999999999999999999999999998876655555678999999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|+++++++.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++|||++
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~ 423 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIET 423 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeecccccccee
Confidence 99999999999999999999999999999999999888899999999999999999999998899999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||||++||++++++|++..|+|+.+.|+|||||+.++.+|..||+|+|.++||.|+|.++|+|+|++|.||+
T Consensus 424 ~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGi 503 (657)
T PTZ00186 424 LGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGI 503 (657)
T ss_pred cCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.||++.+++|.....|+++||++|++++++++.+|+..++..+++|++|.+++.+++.+++. ..+++++++
T Consensus 504 L~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 582 (657)
T PTZ00186 504 CHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKE 582 (657)
T ss_pred EEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHH
Confidence 9999999999999999999888899999999999999999999999999999999999999999999754 468999999
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 633 KVEGKLKELKDAIAEG--STQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
.+.+.++++++||..+ +.+.+++++++|++.+.++..++|+.+
T Consensus 583 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 583 NVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999975 469999999999999999999998643
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-108 Score=954.26 Aligned_cols=600 Identities=60% Similarity=0.959 Sum_probs=570.1
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++++|.+.+++|.+|+|.+||+|+|.++++++||..|+.+...+|.++++++|||||+.+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 46999999999999999999999999999999999999999877799999999999999999999999999999999877
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
.+.+.+||.++...++.+.+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 159 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIR--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIA 159 (653)
T ss_pred HHhhcCCceEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHc
Confidence 78889999999888887777665 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
||++++||+||+|||++|+..... +.++|||||||||||+||+++.++.++|+++.|+.+|||++||+.|++|+.++|+
T Consensus 160 Gl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~ 239 (653)
T PRK13411 160 GLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQ 239 (653)
T ss_pred CCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543 6889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLR 394 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~ 394 (714)
.+++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+..++.++.+.|||++||++|+|+++++..+|+++|+
T Consensus 240 ~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 319 (653)
T PRK13411 240 QQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALK 319 (653)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999887655445578899999999999999999999999999999
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-CCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeee
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-REPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETL 473 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~ 473 (714)
++++.+.+|+.|+||||+||||+|++.|+++|+ ..+..++||+++||+|||++|+++++.++++.+.|++|++||+++.
T Consensus 320 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 320 DAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEec
Confidence 999999999999999999999999999999996 6788899999999999999999999988999999999999999999
Q ss_pred CCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceE
Q 005099 474 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 553 (714)
Q Consensus 474 ~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil 553 (714)
++.+.+|||||++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|++|.|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHH
Q 005099 554 SVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGK 633 (714)
Q Consensus 554 ~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~ 633 (714)
+|++.+..++++..+.+.....|+++++++++++++++.++|++++++.++||+||+|||.+|++|+++.++++++++++
T Consensus 480 ~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~ 559 (653)
T PRK13411 480 KVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQR 559 (653)
T ss_pred EEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999987778999999999
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005099 634 VEGKLKELKDAIAEG--STQAMKDTMAALNQEVMQLGQSLYNQPGA 677 (714)
Q Consensus 634 ~~~~l~~~~~wl~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 677 (714)
+.+.++++++||+++ +.+++++++++|++.+.++..++|+++|+
T Consensus 560 i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 560 AEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999986 48999999999999999999999986544
No 7
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-111 Score=885.57 Aligned_cols=599 Identities=63% Similarity=0.957 Sum_probs=586.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.|+|||+||||||++++.++++.++.|.+|.|.+||+|+|+.++++++|..|+++...||.|+++.-||+|||++++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++.+++.+||++++..+|..|++. +++.++|.++.+++|.+++++|++|++.++..+|+||||||++.||+++++|.
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~--~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA--RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe--CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 899999999999999999999998 59999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++||+++++++|||+|||++|+++.+.+..++|||+||||||++|+.+.+++|+|.++.||.++||+|||..+.+|+...
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 99999999999999999999999988789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|++..++++.++.++++||.+++|++|+.||+..+..+++|+++.+..|+.++++++||.+||+++.++++|.+++++++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|++|++..+||+.|+||||++|+|.+++.+++.||+.+...+||||+||.|||++++.|++++++++++||+|++|||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.|..|||||+.||+++++.|++..|+|+.+.|.++|||+++..+|.++|+|.+.++||.|+|.++|+|+|+||+|||
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
++|+|.|+.|+|.++|++...+.|+++|+++|+++++++...|+.++++.+.+|+.|++++.....+..+.+.++.++.+
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 633 KVEGKLKELKDAIAE---GSTQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~---~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
+|...+.++.+.+.. .+.++++.+...|++...++.+.+|.-+
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~ 629 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNM 629 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhh
Confidence 999999999998874 5679999999999999999999999854
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.2e-108 Score=951.78 Aligned_cols=599 Identities=56% Similarity=0.911 Sum_probs=573.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
++.+||||||||||+||++++|.+++++|..|+|.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 4579999999999999999999999999999999999999998777999999999999999999999999999999875
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++...+.|||.++.++++.+.+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQ--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 6777889999999988888777765 6789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++|||++++||+||+|||++|+.....+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++||.++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876788999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|+++++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..|+.++.++|||++||++|+|+++++.++|+++
T Consensus 278 f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~ 357 (663)
T PTZ00400 278 FKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKC 357 (663)
T ss_pred hhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888999999999999999999999999999998877665566789999999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|+++++.+.+|+.|+||||+||+|+|+++|+++||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++
T Consensus 358 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 358 IKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIET 437 (663)
T ss_pred HHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||+|++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|.|.++|+|+|++|.||+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.++++.+++|.....|+++++++++++++++.++|++.+++.++||+||+|||.+|++|+++.+.+++++++
T Consensus 518 l~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere 597 (663)
T PTZ00400 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKD 597 (663)
T ss_pred EEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHH
Confidence 99999999999999999987778999999999999999999999999999999999999999999998788899999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
++.+.++++++||++++.+++++++++|++.+.++..++|+.+
T Consensus 598 ~i~~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 598 ELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999743
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.8e-107 Score=942.05 Aligned_cols=597 Identities=66% Similarity=1.019 Sum_probs=570.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++++|.+++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||++..+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 81 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQ 81 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHH
Confidence 46999999999999999999999999999999999999999876799999999999999999999999999999966688
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
...+.+||.++.+.++...+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||++|++||++|
T Consensus 82 ~~~~~~p~~~~~~~~~~~~~~~~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 82 KDIKLVPYKIVKADNGDAWVEID--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHhhcCCeEEEEcCCCceEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88899999999988887777765 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
||++++||+||+|||++|+.....+.++|||||||||||+|++++.++.++++++.|+.++||++||+.|++|+.++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred CCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.++|||++|+++|+|+++++.++|+++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988888999999999999999999999999999998877654555789999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++++.+|+.|+||||+||||+|++.|+++||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~ 399 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGG 399 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||+|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 400 ~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v 479 (627)
T PRK00290 400 VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479 (627)
T ss_pred eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.+..++++.+++|.....|++++++++++++.++.++|++.+++.+++|+||+|+|.++++|+++.+++++++++++.
T Consensus 480 ~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~ 559 (627)
T PRK00290 480 SAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIE 559 (627)
T ss_pred EEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999987778999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
+.|+++++||+.++.+++++++++|+++++++..++|+.
T Consensus 560 ~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~~~ 598 (627)
T PRK00290 560 AAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQ 598 (627)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999899999999999999999999999873
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.5e-107 Score=938.60 Aligned_cols=598 Identities=75% Similarity=1.122 Sum_probs=572.7
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++++|.+++++|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 46999999999999999999999999999999999999999887789999999999999999999999999999999888
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
...+.|||.++.+.++.+.+.++..+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88888999999888888888776667889999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
||++++||+||+|||++|+.+...+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++|+.++|++
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred CCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..++.++...|||++||++|+++++++..+|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999998876544455688899999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++.+.+|+.|+||||+||||.|++.|+++||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++.++
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~~~ 401 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGG 401 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeeccCC
Confidence 99999999999999999999999999999999989999999999999999999999998899999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||||++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|
T Consensus 402 ~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v 481 (621)
T CHL00094 402 VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSV 481 (621)
T ss_pred EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.++.++++..+.+.....|++++++++++++.++..+|++.+++.++||+||+|+|.+|++|+++.+.+++++++++.
T Consensus 482 ~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 561 (621)
T CHL00094 482 TAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIE 561 (621)
T ss_pred EEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999987778999999999999999999999999999999999999999999998777889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+.++++++||++++.+.+++++++|++.+++++.++|.
T Consensus 562 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 562 NLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=4.1e-105 Score=922.12 Aligned_cols=594 Identities=67% Similarity=1.032 Sum_probs=566.9
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDE 156 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~ 156 (714)
.+||||||||||+||++++|.+++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 38999999999999999999999999999999999999999877999999999999999999999999999999988888
Q ss_pred hhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 005099 157 ESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAG 236 (714)
Q Consensus 157 ~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AG 236 (714)
..+.+||. +..+++.+.+.+. ++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++||
T Consensus 81 ~~~~~~~~-v~~~~~~~~~~v~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 81 EAKRVPYK-VVGDGGDVRVKVD--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HhhcCCee-EEcCCCceEEEEC--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 88999999 5566777777765 67899999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEechhHHHHHHccccc-CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 237 LDVLRIINEPTAASLAYGFEK-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 237 l~~~~li~Ep~AAAlay~~~~-~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
|++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++++++.|+.++||++||+.|++|+.++|++
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999876 4578999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..|+.++.++|||++|+++|+|+++++.++|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999998876655555788999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++++.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCC
Confidence 99999999999999999999999999999999889999999999999999999999998899999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||+|++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++++.+.|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.+..++++.+++++....|++++++++++++.++..+|+..+++.++||+||+|||.+|++|+++.+++++++++++.
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~ 557 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIE 557 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999999999998777889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+.++++++||+.++.+++++++++|++.+++++.++|+
T Consensus 558 ~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 558 KAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999874
No 12
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-107 Score=890.57 Aligned_cols=595 Identities=50% Similarity=0.789 Sum_probs=571.3
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
...+||||||||||||+++.++.++++.|++|++.+||+|+|.++ ++++|..|+.+...||.|+++++||++|+.+++
T Consensus 6 ~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred ccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 567999999999999999999999999999999999999999998 899999999999999999999999999999996
Q ss_pred -hhhhhccceeEEEEcCCCc--EEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGN--VKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~--~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
++.++++|||.+..+.++. +.+.+.++.+.++|+++++++|.++++.++.+++.++.++|+|||+||++.||+++++
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~ 164 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKD 164 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHH
Confidence 8899999999998655544 4455666678899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccC--CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
|+.+|||+++++|+||+|||++|+++.+ ...+|||+|+||||||+|++.+.++.++++++.++.++||++||+.|.+|
T Consensus 165 A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 165 AALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred HHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHH
Confidence 9999999999999999999999998765 36889999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+..+|+++++.++..+++++.||+.+||++|+.||+..++.+.+++++++ .++...|||.+||++|.+++.++..+
T Consensus 245 ~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~~~ 320 (620)
T KOG0101|consen 245 FAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTLEP 320 (620)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 78999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-CCCCCcCCCChhHHHhHHHHHHhHhhCC----CCCcEEEee
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-GREPNVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLDV 463 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-g~~~~~~~np~eaVA~GAa~~aa~ls~~----~~~~~~~dv 463 (714)
+..+|+++++++.+|+.|+||||++|+|.+|..++++| ++++..++||||+||+|||+||+.+++. +.++++.|+
T Consensus 321 v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~ 400 (620)
T KOG0101|consen 321 VEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDV 400 (620)
T ss_pred HHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeec
Confidence 99999999999999999999999999999999999999 6888999999999999999999999986 678999999
Q ss_pred ccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEE
Q 005099 464 TPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 543 (714)
Q Consensus 464 ~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v 543 (714)
.|+++||++.++.|.++|++|+.+|++++++|+++.|+|+.+.|.||+||+.++++|.++|.|+|.++||+|+|+++|+|
T Consensus 401 ~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Iev 480 (620)
T KOG0101|consen 401 APLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480 (620)
T ss_pred ccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 005099 544 KFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKEL 622 (714)
Q Consensus 544 ~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~ 622 (714)
+|.+|.||||.|++.|+.|||...++|++. +.||+++|++|..+++.+..+|...+++..++|+||+|+|+++..+++-
T Consensus 481 tfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~ 560 (620)
T KOG0101|consen 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDE 560 (620)
T ss_pred EEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999985
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 623 GDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 623 ~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
.+.++++++.++.+.|++...||+.+ ..++|++|.++|+..|.||+.++|+.
T Consensus 561 ~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 561 KGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred ccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 58999999999999999999999965 49999999999999999999999995
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=5.7e-103 Score=899.03 Aligned_cols=584 Identities=41% Similarity=0.680 Sum_probs=551.9
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhhhh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEE 157 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~~ 157 (714)
+||||||||||+||++.+|++++++|..|.+.+||+|+|.++++++||..|+.+...+|.++++++||+||+.+.+++.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999999877999999999999999999999999999999888765
Q ss_pred hccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 005099 158 SKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGL 237 (714)
Q Consensus 158 ~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl 237 (714)
.+.+||.++...++.+.+... ...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTV--QGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred cccCCEEEEEcCCCceEEEeC--CCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677999998888888877765 347999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccccc
Q 005099 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDE 317 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 317 (714)
++++||+||+|||++|+.+...+.++|||||||||||+|++++.++.++|+++.|+.++||++||+.|++|+.++++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~--- 234 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG--- 234 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC---
Confidence 99999999999999999887678899999999999999999999999999999999999999999999999997753
Q ss_pred CCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005099 318 GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAK 397 (714)
Q Consensus 318 ~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~ 397 (714)
.+...+++.+.+|+.+||++|+.||.+.++.+.++. .+ .++.++|||++|+++|+|+++++.++|+++|++++
T Consensus 235 -~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 235 -ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444567889999999999999999999888888764 22 68899999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEeeccCCcceeeeCC
Q 005099 398 LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 398 ~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv~~~slgi~~~~~ 475 (714)
+.+.+|+.|+||||+||||+|+++|+++|+..+..++||++|||+|||++|+.+++. .+++.+.|++|++||+++.+|
T Consensus 308 ~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred CChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCC
Confidence 999999999999999999999999999999888889999999999999999999876 358999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.++.||++..+.|.....|++++++++++++++++.+|+..++..+++|++|+|+|.+++.+.++.+.+++++++++.
T Consensus 468 ~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (599)
T TIGR01991 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAID 547 (599)
T ss_pred EEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999987778999999999999999999999999999999999999999999998766789999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
..++++++||+++|.+.++++.++|++.+.+++.+.++.
T Consensus 548 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 548 AAMEALQKALQGDDADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988874
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7.2e-102 Score=891.57 Aligned_cols=583 Identities=40% Similarity=0.677 Sum_probs=548.8
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
...+||||||||||+||++.+|++++++|..|++.+||+|+|.++ .++||..|+.+...+|.++++++||+||+.+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLADI 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh
Confidence 347999999999999999999999999999999999999999887 5999999999999999999999999999999888
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+.....+||.+....+|.+.+... ...++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 174 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARL 174 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 777788999998877887777764 347899999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
|||++++||+||+|||++|+.+...+.++||||+||||||+|++++.++.++|+++.|+.++||++||+.|++|+.++|+
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999887668899999999999999999999999999999999999999999999999998875
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLR 394 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~ 394 (714)
.. ...+++++.+|+.+||++|+.||.+.++.+.++.+ ...|||++|+++|+|+++++.++++++|+
T Consensus 255 ~~----~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 255 LS----PRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred CC----cCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33578899999999999999999998888877421 22499999999999999999999999999
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEeeccCCcceee
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv~~~slgi~~ 472 (714)
++++.+.+|+.|+||||+||||+|++.|+++||..+..++||+++||+|||++|+++++. .+++.+.|++|++||+++
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~ 400 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLET 400 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccccee
Confidence 999999999999999999999999999999999888889999999999999999999886 468999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||+
T Consensus 401 ~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gi 480 (616)
T PRK05183 401 MGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGL 480 (616)
T ss_pred cCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.+|++.++.|.....|++++++++++++++++.+|+..+++.+++|++|.++|.+++.+++..+.+++++++
T Consensus 481 l~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 560 (616)
T PRK05183 481 LSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERA 560 (616)
T ss_pred EEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999987778999999999999999999999999999999999999999999997666789999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
++.+.++++++||+.+|.+.+++++++|++.+.++..+.|+.
T Consensus 561 ~~~~~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 561 AIDAAMAALREVAQGDDADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988873
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.7e-97 Score=846.33 Aligned_cols=553 Identities=34% Similarity=0.543 Sum_probs=498.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
+..+||||||||||+||++.+|++++++|..|++.+||+|+|.++ .++||..| +++++||+||+.++++
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG~~~~~~ 86 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFGKTLKEI 86 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------hHHHHHHHhCCCchhh
Confidence 346999999999999999999999999999999999999999876 69999977 7999999999998753
Q ss_pred hhhh--ccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 155 DEES--KQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 155 ~~~~--~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
.... ............+.+.+... ++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 87 LNTPALFSLVKDYLDVNSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred ccchhhHhhhhheeecCCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 2110 00011112222334445443 6789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++||++++++|+||+|||++|+.+.....++||||+||||||+|++++.++.++|+++.|+.++||+|||..|++|+..+
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 99999999999999999999998876678899999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|.... +.. .++.||++|+.||.+..... ..++|||++||++|+|+++++..+++++
T Consensus 245 ~~~~~------~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 245 FDLPN------SID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred cCCCC------CHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 75322 222 23469999999998764211 1689999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|++++ +.+|+.|+||||+||||+|+++|+++||.++..++||+++||+|||++|+.+++...++++.|++|++||+++
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~ 378 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMEL 378 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEe
Confidence 99998 5789999999999999999999999999988899999999999999999999988788999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||||++||+++++.|++..|+|+.+.|.|||||+....+|..||+|.|.++|+.|+|.++|+|+|++|.||+
T Consensus 379 ~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gi 458 (595)
T PRK01433 379 YGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458 (595)
T ss_pred cCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.||++.++.|..+..|+++|+++|+++++++..+|+..++..+++|++|++++.+++.++++.+.+++++++
T Consensus 459 l~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (595)
T PRK01433 459 LSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEIS 538 (595)
T ss_pred EEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999987777999999999999999999999999999999999999999999998777778999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQ 666 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~ 666 (714)
++.+.++++++||+.+|...+++++++|+..+.+
T Consensus 539 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 539 IINSLLDNIKEAVHARDIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877777777666665555
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-96 Score=834.64 Aligned_cols=573 Identities=61% Similarity=0.926 Sum_probs=548.2
Q ss_pred CCeEEEEEcCccceEEEEEECC-eeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
+..+|||||||||||||+++++ .+.++.|..|.|.+||+|+|.+++++++|..|+.++..||.++++.+||++|+..
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~-- 81 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGS-- 81 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCC--
Confidence 4579999999999999999988 7999999999999999999998878999999999999999999999999999872
Q ss_pred hhhhhccceeEEEEcCCC-cEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENG-NVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g-~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
.+ .+.+... ++.++|++|++++|++|+++++.+++..++++|||||+||++.||+++++|+
T Consensus 82 ----------------~~~~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~ 143 (579)
T COG0443 82 ----------------NGLKISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA 143 (579)
T ss_pred ----------------CCCcceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH
Confidence 11 1233333 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++|||+++++++||+|||++|+.+...+.+|||||+||||||+|++++.++.++|+++.|+.+|||+|||.+|.+|+..+
T Consensus 144 ~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 144 RIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred HHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|+.++++++..++.+++||+.+||++|+.||+..++.+.++++..+ .++..+|||++||+++.+++.++..++.++
T Consensus 224 f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 224 FKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred hhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887655 678899999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|.++++++.+|+.|+||||++|||.|++.++++|++++...+||+++||.|||++|+.+++..+++++.|++|+++|+++
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~ 379 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIET 379 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.++.+..+|++|+.+|.++...|++..|+|+.+.+.++|||+.+..+|..+|.|.+.++||.|+|.++|+|+|.+|.||+
T Consensus 380 ~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi 459 (579)
T COG0443 380 LGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459 (579)
T ss_pred CcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
+.|++.++.+|++..++|.....|+++++++|+++++.+.+.|+..++..+.+|+++.+++.++..|.+.. .+++++++
T Consensus 460 ~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 538 (579)
T COG0443 460 LNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKE 538 (579)
T ss_pred eEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHH
Confidence 99999999999999999999955999999999999999999999999999999999999999999998866 89999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
++...+.++++||+.+ .++++.+.++|+....++..+.|+
T Consensus 539 ~~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 539 KIEEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999984 899999999999999999998876
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=6.7e-94 Score=834.81 Aligned_cols=589 Identities=47% Similarity=0.783 Sum_probs=535.9
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--hh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--VD 155 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~--v~ 155 (714)
|||||||||||+||++.+|.++++.|..|+|++||+|+|.++ ++++|..|......+|.++++++|||||+.+++ ++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999988 999999999999999999999999999998875 88
Q ss_pred hhhccceeEEEEcCCCcEEEEeC--CCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 156 EESKQVSYRVVRDENGNVKLECP--AIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~--~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
.+.+.+||.+..+++|...+.+. +....++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 88899999999888887665544 4445899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
.|||++++||+||+|||++|+..... +.++|||||||||+|+|++++.++.++++++.++..+||.+||+.|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887655 78999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCC--CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSS--LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVE 390 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~--~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~ 390 (714)
|+.+++.++..+++.+.+|+.+||++|+.||. +.+..+.++.+.++ + .++.++|||++|+++++|+++++.++|+
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~--~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD--G-EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT--T-EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--c-cccccccccceecccccccccccccccc
Confidence 99988889888999999999999999999999 56666677666552 1 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC--CCCCcEEEeeccCCc
Q 005099 391 TSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG--DVSDIVLLDVTPLSL 468 (714)
Q Consensus 391 ~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~--~~~~~~~~dv~~~sl 468 (714)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999988889999999999999999999998 478899999999999
Q ss_pred ceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEec
Q 005099 469 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548 (714)
Q Consensus 469 gi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id 548 (714)
||++.++.+.+++++|+++|.+.+..|++..++|+.+.|.||||++....+|..||++.|.++++.+.|.++|+|+|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCH
Q 005099 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPA 628 (714)
Q Consensus 549 ~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~ 628 (714)
.+|+|+|++.+..++++..+.+.....+++++++++.++++++..+|+.+++..+++|++|+++|++|+.+++..+.+++
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~ 556 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSE 556 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTH
T ss_pred eeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999989998886699999999999999999999999999999999999999999999877777887
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 629 EVKGKVEGKLKELKDAIAE----GSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 629 ~~~~~~~~~l~~~~~wl~~----~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+++ .+.+++..+||++ .+.++|++++++|++..++|..|+|+
T Consensus 557 ~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777 5666666666664 46999999999999999999999885
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-86 Score=719.40 Aligned_cols=579 Identities=31% Similarity=0.525 Sum_probs=531.2
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--h
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--V 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~--v 154 (714)
+|+|||||..+|.+|+.+.+..++|.|+.++|.||++|+|.+. .|++|.+|+.+...|+.|++..+||++|+.|+| +
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 3999999999999999999999999999999999999999988 899999999999999999999999999999996 8
Q ss_pred hhhhccceeEEEEcCCCcEE--EEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVK--LECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~--v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
|.+.+.+|+.++.+.+|.+. +++-++.+.|+|++|++|+|.+|++.+++.+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999998655 5566788899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCC-------CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKN-------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~-------~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
++|||++++|++|.+|+|++|+..+.+ +.+|+++|+|+.++.+|++.+..|.+.++++.+|.++||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999987543 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHH
Q 005099 306 VDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRL 385 (714)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i 385 (714)
.+|++.+|+.+|++++..+++++.||+.+||++|+.||++...+.+|++++++ .+.+..|+|++||++|.|+++++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988 78899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEee
Q 005099 386 KTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDV 463 (714)
Q Consensus 386 ~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv 463 (714)
..++.++|+++++..+||+.|.+|||+||||.|++.|.++||+++.+++|.++|||+|||+++|++|+. ++++-+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 788999999
Q ss_pred ccCCcceeee----C-CeeEEEEeCCCccCCCccceeeecccCCcceeeeeeccc-ccccccCceeeEEEEeCCCCCCCC
Q 005099 464 TPLSLGLETL----G-GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGE-REFVRDNKSLGSFRLDGIPPAPRG 537 (714)
Q Consensus 464 ~~~slgi~~~----~-~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge-~~~~~~n~~lg~~~l~~~~~~~~g 537 (714)
.||++.+.+. + +....+||+|.++|.++..+|.... .|.+.++++. ...+.....|++|.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 9999988864 3 4557899999999999998888764 4788888776 444545568999999999887774
Q ss_pred -CCeeEEEEEecCCceEEEEEEE------c----------------------CCC----ceeeeEEccC--CCCChHHHH
Q 005099 538 -VPQIEVKFDIDANGILSVSAVD------K----------------------GTG----KKQDITITGA--STLPNDEVQ 582 (714)
Q Consensus 538 -~~~i~v~f~id~~gil~v~a~~------~----------------------~t~----~~~~i~i~~~--~~l~~~ei~ 582 (714)
..+++|...++.+||++|...- . ..+ +...+.+... ++|+.++++
T Consensus 473 e~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~ 552 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELE 552 (727)
T ss_pred cccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHH
Confidence 6789999999999999986431 0 011 1223444433 679999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Q 005099 583 RMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE-LGDKVPAEVKGKVEGKLKELKDAIAEG----STQAMKDTM 657 (714)
Q Consensus 583 ~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~ 657 (714)
..++++-+|..+|+...++.++||.||+|||++|++|.+ |.++++++++++|...|+++++|||++ ..+.|..|+
T Consensus 553 ~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl 632 (727)
T KOG0103|consen 553 LYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKL 632 (727)
T ss_pred HHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 999999999999999999999999999999999999998 889999999999999999999999975 378888888
Q ss_pred HHHHHHH
Q 005099 658 AALNQEV 664 (714)
Q Consensus 658 ~~l~~~~ 664 (714)
.+|++..
T Consensus 633 ~elk~~g 639 (727)
T KOG0103|consen 633 EELKKLG 639 (727)
T ss_pred HHHHhhh
Confidence 8888776
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-75 Score=630.35 Aligned_cols=584 Identities=28% Similarity=0.465 Sum_probs=508.7
Q ss_pred CCeEEEEEcCccceEEEEEECCee-EEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKP-TIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~-~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
...|++|||||.|++|+++++|.| +|+.|..++|++|++|+|.++ +|++|.+|.....++|++++.+++.|+|+...+
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~-eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGG-ERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCC-ceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 567999999999999999999977 899999999999999999866 999999999999999999999999999999886
Q ss_pred --hhhhhcccee-EEEEcC-CCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHH
Q 005099 154 --VDEESKQVSY-RVVRDE-NGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATK 229 (714)
Q Consensus 154 --v~~~~~~~~~-~v~~~~-~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~ 229 (714)
++.+.+++|| .++.++ .+.+.+.+.+ ...|++|++++|+|.+.+..|+.+...+|+++|||||.||++.||+++.
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 6667777665 566664 5567776653 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeEEechhHHHHHHcccccCC-----CceEEEEEeCCcceEEEEEEEc----------CceEEEEEecCCC
Q 005099 230 DAGRIAGLDVLRIINEPTAASLAYGFEKKN-----NETILVFDLGGGTFDVSVLEVG----------DGVFEVLSTSGDT 294 (714)
Q Consensus 230 ~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~-----~~~vLVvD~GgGT~Dvsv~~~~----------~~~~~vl~~~gd~ 294 (714)
+|+++||++++.||||-+|||+.|+..+.. ++++||||||+|.+.++++.+. ...+++++.++|.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999998643 6899999999999999999874 1479999999999
Q ss_pred CCChhHHHHHHHHHHHhccccccC--CCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHH
Q 005099 295 HLGGDDFDKRIVDWLASNFKRDEG--IDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRV 372 (714)
Q Consensus 295 ~lGG~d~D~~l~~~l~~~~~~~~~--~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~ 372 (714)
.|||..|..+|.+||.+.|.+.++ .++..+||++.+|.++|+++|..||.|..+.+.|+.+.++ .||..+|||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe 334 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTRE 334 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----cccccceeHH
Confidence 999999999999999999988765 4677899999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCCcCCCChhHHHhHHHHHHhHh
Q 005099 373 KFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 373 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~~~~np~eaVA~GAa~~aa~l 451 (714)
+||++|+++..++..+|+++|..++++.++|+.|+|.||+||+|.||+.|.++.|. ++...+|.|||+++||+++||.|
T Consensus 335 ~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~L 414 (902)
T KOG0104|consen 335 EFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHL 414 (902)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999964 78899999999999999999999
Q ss_pred hCC--CCCcEEEeeccCCcceeeeCC--------eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCc
Q 005099 452 AGD--VSDIVLLDVTPLSLGLETLGG--------VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 521 (714)
Q Consensus 452 s~~--~~~~~~~dv~~~slgi~~~~~--------~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~ 521 (714)
|.. ++++.+.|.++|+|-++..+. ....+|+++.++|.++..+|+.+.|+ +.+.+-.+.-. .
T Consensus 415 SksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~ 486 (902)
T KOG0104|consen 415 SKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----Q 486 (902)
T ss_pred cccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----c
Confidence 987 789999999999998876543 12348999999999998888776653 44444333211 2
Q ss_pred eeeEEEEeCCCCC----CC---CCCeeEEEEEecCCceEEEEEEEcC---------------------C-----------
Q 005099 522 SLGSFRLDGIPPA----PR---GVPQIEVKFDIDANGILSVSAVDKG---------------------T----------- 562 (714)
Q Consensus 522 ~lg~~~l~~~~~~----~~---g~~~i~v~f~id~~gil~v~a~~~~---------------------t----------- 562 (714)
.+-.++|.++... +. ....|+++|.+|.+|++.|+..+.. +
T Consensus 487 nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~ 566 (902)
T KOG0104|consen 487 NLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSV 566 (902)
T ss_pred CccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhcccccccccccccccc
Confidence 3447777766543 11 1356999999999999998754200 0
Q ss_pred ------------Cc--e------------------------------------eeeEEccC----CCCChHHHHHHHHHH
Q 005099 563 ------------GK--K------------------------------------QDITITGA----STLPNDEVQRMVQEA 588 (714)
Q Consensus 563 ------------~~--~------------------------------------~~i~i~~~----~~l~~~ei~~~~~~~ 588 (714)
++ + ..+.|... ..|++..++.....+
T Consensus 567 ~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl 646 (902)
T KOG0104|consen 567 QEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKL 646 (902)
T ss_pred chhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHH
Confidence 00 0 01333322 468899999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 005099 589 ERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEG----STQAMKDTMAALNQ 662 (714)
Q Consensus 589 ~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~ 662 (714)
+.+.+.|+.+.++.++.|.||.|+|.++++|.+ |.++.+++|+.+|+..+..+.+||+++ -...+.+++.+|++
T Consensus 647 ~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~ 726 (902)
T KOG0104|consen 647 EDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKK 726 (902)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999987 888999999999999999999999975 38899999999999
Q ss_pred HHHHHHHHHh
Q 005099 663 EVMQLGQSLY 672 (714)
Q Consensus 663 ~~~~i~~~~~ 672 (714)
++..+..|..
T Consensus 727 l~~~~~~R~e 736 (902)
T KOG0104|consen 727 LETSKNFREE 736 (902)
T ss_pred HHhhhhHHHH
Confidence 9988876644
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3.5e-57 Score=499.95 Aligned_cols=339 Identities=29% Similarity=0.425 Sum_probs=293.3
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEe---------------------------------------
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT--------------------------------------- 117 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~--------------------------------------- 117 (714)
+++|||||||||+||++++|++++++++.|.+.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 37999999999999999999999999999999999999995
Q ss_pred -cCCCEEecHHHHHhhhhCCCch--HHHHhHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHH
Q 005099 118 -KNGDRLVGQIAKRQAVVNPENT--FFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194 (714)
Q Consensus 118 -~~~~~~vG~~A~~~~~~~p~~~--i~~~KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L 194 (714)
++++.++|..|+.+...+|.++ +.++|++||... |. ......++++++++|
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~-----------~~---------------~~~~~~~e~l~a~iL 134 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASG-----------LK---------------PQQVALFEDLVCAMM 134 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCC-----------CC---------------ccceeCHHHHHHHHH
Confidence 3457889999999999999998 779999999752 10 012234899999999
Q ss_pred HHHHHHHHhhcCCCcCeEEEEecCCCC-----HHHHHH---HHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEE
Q 005099 195 RKLVDDASKFLNDSVTKAVVTVPAYFN-----DSQRTA---TKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVF 266 (714)
Q Consensus 195 ~~l~~~a~~~~~~~v~~~VITVPa~f~-----~~qR~~---l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVv 266 (714)
++|++.++.+++.++.++|||||++|+ +.||++ +++||+.||+++++|++||+|||++|+.....+..+|||
T Consensus 135 ~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~ 214 (450)
T PRK11678 135 LHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVV 214 (450)
T ss_pred HHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEE
Confidence 999999999999999999999999999 788776 699999999999999999999999999877678999999
Q ss_pred EeCCcceEEEEEEEcCc-------eEEEEEecCCCCCChhHHHHHHH-HHHHhcccc----ccCCCc-------------
Q 005099 267 DLGGGTFDVSVLEVGDG-------VFEVLSTSGDTHLGGDDFDKRIV-DWLASNFKR----DEGIDL------------- 321 (714)
Q Consensus 267 D~GgGT~Dvsv~~~~~~-------~~~vl~~~gd~~lGG~d~D~~l~-~~l~~~~~~----~~~~~~------------- 321 (714)
||||||||+|++++.++ ..+++++.| .++||+|||+.|+ +++...|+. +.+.++
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 99999999999999654 468999998 5899999999998 677777642 111100
Q ss_pred ----------------------hhcHHHH------------HHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEE
Q 005099 322 ----------------------LKDKQAL------------QRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDT 367 (714)
Q Consensus 322 ----------------------~~~~~~~------------~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~ 367 (714)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+. .++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcce
Confidence 0123333 3688999999999999999999887653 34678
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHH
Q 005099 368 TLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 368 ~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~ 447 (714)
+|||++|+++++++++++.++|+++|+++++. ++.|+||||+|+||.|++.|++.||.......+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999975 579999999999999999999999887777889999999999999
Q ss_pred HhHh
Q 005099 448 AGVL 451 (714)
Q Consensus 448 aa~l 451 (714)
|+.+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 9763
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=4.5e-40 Score=355.01 Aligned_cols=310 Identities=26% Similarity=0.381 Sum_probs=241.0
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-CCE-EecHHHHHhhhhCCCchHHHHhHhhCCCchhhhh
Q 005099 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-GDR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDE 156 (714)
Q Consensus 79 IGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~ 156 (714)
+||||||+||+|+.. ++..++. +||+|+|..+ +.. .+|..|+......|.+... .+
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------IR------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------Ec-------
Confidence 899999999999876 4555554 6999999964 234 6899997766555554321 00
Q ss_pred hhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 005099 157 ESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAG 236 (714)
Q Consensus 157 ~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AG 236 (714)
| -....+...++...+|+++.+.+..........+|||||++|++.||+++++|++.||
T Consensus 64 -----p----------------i~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 64 -----P----------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -----c----------------CCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 1 0112233446677777887765543222333479999999999999999999999999
Q ss_pred CCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccc
Q 005099 237 LDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316 (714)
Q Consensus 237 l~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~ 316 (714)
++++.+++||+|||++|+.+...+..++|||+||||||+++++..... ..++..+||++||+.|++++..+|+..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999876667789999999999999999976422 246789999999999999999876532
Q ss_pred cCCCchhcHHHHHHHHHHHHHhhhhcCCCce----eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQ----TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 317 ~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
.+ ...||++|+.++.... ..+.+.. .+........++|+|++|++++.++++++.+.|+++
T Consensus 198 ~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~ 262 (336)
T PRK13928 198 IG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSV 262 (336)
T ss_pred cC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 3579999999875421 2222211 110111456789999999999999999999999999
Q ss_pred HHHcC--CCCCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHh
Q 005099 393 LRDAK--LSFKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 393 L~~a~--~~~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~l 451 (714)
|+.++ +..+.++ .|+|+||+|++|.|+++|++.|+.++....||+++||+|||+++..+
T Consensus 263 l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 263 LERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99986 4456677 79999999999999999999999998889999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=4.4e-39 Score=346.47 Aligned_cols=309 Identities=25% Similarity=0.344 Sum_probs=245.8
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCC--EEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
..+||||||+|+++ |.+++.. +.| .||+|+|+.++. ..+|..|+.+..++|.++... + +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----p---- 65 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----P---- 65 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----c----
Confidence 36999999999985 5566554 444 599999986544 579999998888888765321 1 1
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcC--eEEEEecCCCCHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVT--KAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~--~~VITVPa~f~~~qR~~l~~Aa 232 (714)
-....+...++++.+|++++..++..++..+. .+|||||++|++.||+++.+|+
T Consensus 66 ------------------------i~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~ 121 (335)
T PRK13929 66 ------------------------MKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV 121 (335)
T ss_pred ------------------------CCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 01112233478899999999998877776554 7999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
+.||++++.+++||+|||++|+.....+..++|+|+||||+|++++.+++.. ..++..+||++||+.|.+++...
T Consensus 122 ~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~ 196 (335)
T PRK13929 122 KNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKK 196 (335)
T ss_pred HHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876667889999999999999999876432 24567899999999999999876
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc----eeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT----QTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~----~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
|+...+ ...||++|+.++... ...+.+... +........+++++++|+++|.+++.++.+.
T Consensus 197 ~~~~~~-------------~~~AE~iK~~l~~~~~~~~~~~~~v~g~--~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~ 261 (335)
T PRK13929 197 YNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGR--DLVTGLPKTITLESKEIQGAMRESLLHILEA 261 (335)
T ss_pred hCcCcC-------------HHHHHHHHHHHcCCCCCCCCceEEEeCC--ccCCCCCeEEEEcHHHHHHHHHHHHHHHHHH
Confidence 542211 257999999998642 112222110 1111134678999999999999999999999
Q ss_pred HHHHHHHcCCC--CCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHH
Q 005099 389 VETSLRDAKLS--FKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 389 i~~~L~~a~~~--~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~a 448 (714)
|.++|+++... .+.++ .|+|+||+|++|.++++|++.|+.++....||+++||+||+..-
T Consensus 262 i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 262 IRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999997533 35677 69999999999999999999999999888999999999999763
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=7.6e-37 Score=329.62 Aligned_cols=309 Identities=26% Similarity=0.393 Sum_probs=229.0
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC----CC--EEecHHHHHhhhhCCCchHHHHhHhhCCCch
Q 005099 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN----GD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMV 152 (714)
Q Consensus 79 IGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~----~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 152 (714)
|||||||+||++++...| .++ ..||+|+|.++ .. ..+|..|+....+.|.++. +++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC-----
Confidence 999999999999875433 344 27999999854 22 5699999776555555431 11111
Q ss_pred hhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 153 EVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 153 ~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
.+| .+...+.+..+++++.....+..+.....+|+|||++|+..||+++++|+
T Consensus 69 ----------------~~G-----------~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 69 ----------------KDG-----------VIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ----------------CCC-----------EEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 111 11122334444555544433222222238999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
+.||++++.+++||+|||++|+.....+..++|||+||||||+++++.++..+ .++.++||++||+.|++++..+
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~-----~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVV-----SRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEe-----cCCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766677899999999999999998765332 4567899999999999999876
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce-----eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ-----TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKT 387 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~-----~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~ 387 (714)
+..... ++.||++|+.++.... ..+.+.. .+........+.|++++|.+++.+.++++.+
T Consensus 197 ~~~~~~-------------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 261 (333)
T TIGR00904 197 YNLLIG-------------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVE 261 (333)
T ss_pred hcccCC-------------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 632211 3579999999976422 1222211 0100112345789999999999999999999
Q ss_pred HHHHHHHHcCCCC-CCC-C-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 388 PVETSLRDAKLSF-KDL-D-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 388 ~i~~~L~~a~~~~-~~i-~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.+.+.|+.+.... .++ + .|+|+||+|++|.+++.|++.|+.++....||+++||.||++++..
T Consensus 262 ~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 262 AVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999976432 233 3 7999999999999999999999999999999999999999998654
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.6e-37 Score=330.03 Aligned_cols=308 Identities=26% Similarity=0.402 Sum_probs=231.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-CC-EEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-GD-RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~-~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
..|||||||++++++.. |+..++ .+||+|+|.++ +. .++|+.|+.+...+|.++.. .
T Consensus 6 ~~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~--~---------- 64 (334)
T PRK13927 6 NDLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA--I---------- 64 (334)
T ss_pred ceeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--E----------
Confidence 46999999999998543 333333 27999999865 33 47999998776666654310 0
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+|+ .+| .+.-.+.+..+|+++......... ....+|||||++|++.||+++++|++.
T Consensus 65 ------~pi-----~~G-----------~i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ 121 (334)
T PRK13927 65 ------RPM-----KDG-----------VIADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALG 121 (334)
T ss_pred ------ecC-----CCC-----------eecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 011 111 111113344555555544333221 123899999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
||++.+.+++||+|||++|+.....+..++|||+||||||+++++.++.. ..++.++||++||+.|.+++.+++.
T Consensus 122 ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~ 196 (334)
T PRK13927 122 AGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYN 196 (334)
T ss_pred cCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999876667789999999999999999876533 2455789999999999999987664
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----eeeec--cccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----TNISL--PFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----~~i~i--~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
.... ...||++|+.++.... ..+.+ +....+ .+..++|+|++|++++.+.++++.+.
T Consensus 197 ~~~~-------------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~e~i~~~~~~i~~~ 259 (334)
T PRK13927 197 LLIG-------------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTG----LPKTITISSNEIREALQEPLSAIVEA 259 (334)
T ss_pred cCcC-------------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCC----CCeEEEECHHHHHHHHHHHHHHHHHH
Confidence 2211 3478999999886432 22222 111111 44578999999999999999999999
Q ss_pred HHHHHHHcCCC--CCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 389 VETSLRDAKLS--FKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 389 i~~~L~~a~~~--~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
|.++|+++... ...++ .|+|+||+|++|.|+++|++.|+.++....||+++||+||++++..
T Consensus 260 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 260 VKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999998643 22334 5999999999999999999999999999999999999999999765
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=9.5e-36 Score=321.72 Aligned_cols=312 Identities=25% Similarity=0.349 Sum_probs=235.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-C-CEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-G-DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~-~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
...+||||||++|+++++.++ .++ .+||+|+|... + ..++|..|+......|.+.. ++
T Consensus 8 ~~~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~--------- 67 (335)
T PRK13930 8 SKDIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI--------- 67 (335)
T ss_pred ccceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee---------
Confidence 345999999999999886333 233 16999999853 2 36899999876655554321 00
Q ss_pred hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
+|+ .+| .+...+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+|++
T Consensus 68 -------~pi-----~~G-----------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e 124 (335)
T PRK13930 68 -------RPL-----KDG-----------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAE 124 (335)
T ss_pred -------ecC-----CCC-----------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 111 111 112234567777777766554434446789999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~ 313 (714)
.+|++.+.+++||+|||++|+........+||||+||||||++++..+... ..+...+||.+||+.|.+++.+++
T Consensus 125 ~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~ 199 (335)
T PRK13930 125 HAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKY 199 (335)
T ss_pred HcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999998876556678999999999999999876432 245689999999999999998875
Q ss_pred ccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee----eeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 005099 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT----NISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPV 389 (714)
Q Consensus 314 ~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~----~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i 389 (714)
.. +.. ...||++|+.++..... .+.+.. .+........+.|++++|++++.+.++++.+.|
T Consensus 200 ~~----~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i 264 (335)
T PRK13930 200 NL----LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264 (335)
T ss_pred CC----CCC---------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHH
Confidence 32 111 35799999999864321 122211 111111345788999999999999999999999
Q ss_pred HHHHHHcCCC--CCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 390 ETSLRDAKLS--FKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 390 ~~~L~~a~~~--~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.++|+.+... .+.++ .|+|+||+|++|.++++|++.|+.++....+|+++||+||++.+..
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 9999986532 23345 4999999999999999999999998888889999999999999764
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=2.8e-32 Score=287.56 Aligned_cols=310 Identities=28% Similarity=0.415 Sum_probs=219.7
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC-CE-EecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG-DR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~-~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
.-+||||||+|+.|+.- ++-.++ + .||+|+|+.+. +. .+|..|+...-+.|.+
T Consensus 2 ~~igIDLGT~~t~i~~~--~~Giv~-~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~---------------- 56 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK--GKGIVL-N------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDN---------------- 56 (326)
T ss_dssp SEEEEEE-SSEEEEEET--TTEEEE-E------EES-EEEETTT--EEEESHHHHTTTTS-GTT----------------
T ss_pred CceEEecCcccEEEEEC--CCCEEE-e------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCc----------------
Confidence 46899999999998543 332233 3 59999999753 33 3899986443333332
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+.+..|-....+.-.++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|+..
T Consensus 57 ------------------i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~ 118 (326)
T PF06723_consen 57 ------------------IEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ 118 (326)
T ss_dssp ------------------EEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH
T ss_pred ------------------cEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 12222222333444577888888888877664233345899999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
||...+.|+.||.|||+..+.+..++...||+|+||||||++++...+-.. +.....||++||+.|.+|+.++|+
T Consensus 119 aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~-----s~si~~gG~~~DeaI~~~ir~~y~ 193 (326)
T PF06723_consen 119 AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA-----SRSIRIGGDDIDEAIIRYIREKYN 193 (326)
T ss_dssp TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-----EEEEEecCcchhHHHHHHHHHhhC
Confidence 999999999999999999999988889999999999999999997554322 222589999999999999999986
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVE 390 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~ 390 (714)
-..+ .+.||++|+.+++... ..+.+. ..+......-++.|+-+++.+.+.+.+.+|.+.|+
T Consensus 194 l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~ 258 (326)
T PF06723_consen 194 LLIG-------------ERTAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIK 258 (326)
T ss_dssp EE---------------HHHHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-------------HHHHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5689999999886532 223322 22212225678999999999999999999999999
Q ss_pred HHHHHcCCCC-CCC--CEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 391 TSLRDAKLSF-KDL--DEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 391 ~~L~~a~~~~-~~i--~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
++|++..-.. .|| ++|+|+||+++++.+.++|++.++.++....||..+||.||.....
T Consensus 259 ~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 259 EVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999843110 122 5899999999999999999999999999999999999999987644
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.7e-30 Score=265.74 Aligned_cols=202 Identities=23% Similarity=0.342 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEE
Q 005099 185 AAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETIL 264 (714)
Q Consensus 185 ~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vL 264 (714)
..-+...++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|||++|+.. ..+
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-----~~~ 111 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-----NGA 111 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----CcE
Confidence 345788999999999999999999999999999999999999999999999999999999999999998754 259
Q ss_pred EEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCC
Q 005099 265 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSS 344 (714)
Q Consensus 265 VvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~ 344 (714)
|+|+||||+|+++++.+...+ ..+..+||++||+.|.+++. ++ +.+||++|+.++.
T Consensus 112 vvDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~~ 167 (239)
T TIGR02529 112 VVDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHKD 167 (239)
T ss_pred EEEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcCC
Confidence 999999999999986443222 44678999999999876653 22 4689999987541
Q ss_pred CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHh
Q 005099 345 LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKK 424 (714)
Q Consensus 345 ~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~ 424 (714)
.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|.+++.|++
T Consensus 168 --------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~ 216 (239)
T TIGR02529 168 --------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEK 216 (239)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHH
Confidence 34567899999999999999999964 46799999999999999999999
Q ss_pred hcCCCCCcCCCChhHHHhHHHH
Q 005099 425 MTGREPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 425 ~fg~~~~~~~np~eaVA~GAa~ 446 (714)
.|+.++..+.||++++|.|||+
T Consensus 217 ~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 217 QLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=8.5e-29 Score=250.94 Aligned_cols=316 Identities=27% Similarity=0.372 Sum_probs=242.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC--CC--EEecHHHHHhhhhCCCchHHHHhHhhCCCc
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN--GD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKM 151 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~--~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~ 151 (714)
+..|||||||.|+.|..-..| +++| -||+|++... .. ..+|..|+ +++|+..
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl~------ePSVVAi~~~~~~~~v~aVG~eAK---------------~MlGrTP 61 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGKTKVVLAVGEEAK---------------QMLGRTP 61 (342)
T ss_pred cccceeeecccceEEEEcCce---EEec------CceEEEEeecCCCceEEEehHHHH---------------HHhccCC
Confidence 458999999999999765222 5555 5999999872 22 23899885 5566653
Q ss_pred hhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcC-CCcCeEEEEecCCCCHHHHHHHHH
Q 005099 152 VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLN-DSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 152 ~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~-~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
.+ +..-.|-.+..+.-.++...+|+|+.+....... ...-.++|.||..-++-+|+++++
T Consensus 62 ~n-------------------i~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 62 GN-------------------IVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred CC-------------------ceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHH
Confidence 21 1111222244455667888889999888764333 344479999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~ 310 (714)
|++.||...+.++.||.|||+..++....+..-+|||+||||+|++++.+.+-+. +....+||+.||+.|.+|+.
T Consensus 123 a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD~~De~Ii~yvr 197 (342)
T COG1077 123 AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGDKMDEAIIVYVR 197 (342)
T ss_pred HHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecchhhHHHHHHHH
Confidence 9999999999999999999999999877777889999999999999999887543 33468999999999999999
Q ss_pred hccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee----eeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 005099 311 SNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT----NISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLK 386 (714)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~----~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~ 386 (714)
++|+-..| -+.+|++|+........ ...++.-..+.-....-.++++-+++.+.+++.+++|.
T Consensus 198 ~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iv 264 (342)
T COG1077 198 KKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIV 264 (342)
T ss_pred HHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHH
Confidence 99876555 34689999987654321 11111111111111445689999999999999999999
Q ss_pred HHHHHHHHHcC--CCCCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 387 TPVETSLRDAK--LSFKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 387 ~~i~~~L~~a~--~~~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
+.++..|+... +..+-++ .++|+||++.+..+.+.|.+..+.++....+|-.|||.|+.+....+.
T Consensus 265 eair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 265 EAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999853 3333344 599999999999999999999999999999999999999988776543
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=1.4e-27 Score=248.36 Aligned_cols=202 Identities=25% Similarity=0.395 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEE
Q 005099 187 EEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVF 266 (714)
Q Consensus 187 eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVv 266 (714)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..+|+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-----~~~vv 140 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-----NGAVV 140 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-----CcEEE
Confidence 4677778999999999998988999999999999999999999999999999999999999999988653 25999
Q ss_pred EeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc
Q 005099 267 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT 346 (714)
Q Consensus 267 D~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~ 346 (714)
|+||||||+++++-+...+ .++..+||++||+.|.+++.- + +.+||++|+.++
T Consensus 141 DIGggtt~i~v~~~g~~~~-----~~~~~~GG~~it~~Ia~~l~i--------~-----------~~eAE~lK~~~~--- 193 (267)
T PRK15080 141 DIGGGTTGISILKDGKVVY-----SADEPTGGTHMSLVLAGAYGI--------S-----------FEEAEQYKRDPK--- 193 (267)
T ss_pred EeCCCcEEEEEEECCeEEE-----EecccCchHHHHHHHHHHhCC--------C-----------HHHHHHHHhccC---
Confidence 9999999999976432222 346799999999999987631 1 468999998743
Q ss_pred eeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 347 QTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 347 ~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
+++++.++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.|
T Consensus 194 -----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 194 -----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred -----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 246788999999999999999999863 5789999999999999999999999
Q ss_pred CCCCCcCCCChhHHHhHHHHHH
Q 005099 427 GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 427 g~~~~~~~np~eaVA~GAa~~a 448 (714)
+.++....||+.++|.|||++|
T Consensus 246 g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCcccCCCchHHHHHHHHhhC
Confidence 9999999999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.92 E-value=2e-23 Score=228.53 Aligned_cols=195 Identities=22% Similarity=0.366 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHH
Q 005099 222 DSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301 (714)
Q Consensus 222 ~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~ 301 (714)
....+.+.+|++.||+++..++.||.|+|++|......+..++|+|+||||||++++..+...+ .....+||++|
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~-----~~~i~~GG~~i 231 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY-----TKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE-----EeeecchHHHH
Confidence 3456778889999999999999999999999976544467899999999999999997433222 33468999999
Q ss_pred HHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc------eeeeeccccccCCCCCceeEEEecHHHHH
Q 005099 302 DKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT------QTNISLPFITATADGPKHIDTTLTRVKFE 375 (714)
Q Consensus 302 D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~------~~~i~i~~~~~~~~g~~~~~~~itr~efe 375 (714)
|+.|.+.+.. .+.+||++|+.++... +..+.++... .+....|+|++|+
T Consensus 232 t~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~ 286 (371)
T TIGR01174 232 TKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHH
Confidence 9998775421 1568999999998642 3445554432 2356899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCCCE-EEEEcCCCCchhHHHHHHhhcCCCCCc------------CCCChhHHH
Q 005099 376 ELCSDLLDRLKTPVE-TSLRDAKLSFKDLDE-VILVGGSTRIPAVQELVKKMTGREPNV------------TVNPDEVVA 441 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~-~~L~~a~~~~~~i~~-VvLvGGssrip~v~~~l~~~fg~~~~~------------~~np~eaVA 441 (714)
+++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.|++++++.|+.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 66776 999999999999999999999865421 127889999
Q ss_pred hHHHHH
Q 005099 442 LGAAVQ 447 (714)
Q Consensus 442 ~GAa~~ 447 (714)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 998864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.91 E-value=1.3e-22 Score=224.77 Aligned_cols=195 Identities=19% Similarity=0.262 Sum_probs=150.3
Q ss_pred HHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 226 TATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 226 ~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
+.+.+|++.|||++..++.||.|+|++++.+...+..++|+|+||||||+++++ ++.+. ......+||++|++.|
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~dI 243 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTSDI 243 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHHHH
Confidence 344569999999999999999999999977655578899999999999999997 34322 2334789999999999
Q ss_pred HHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCC------ceeeeeccccccCCCCCceeEEEecHHHHHHHHH
Q 005099 306 VDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSL------TQTNISLPFITATADGPKHIDTTLTRVKFEELCS 379 (714)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~------~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~ 379 (714)
...+.- + ..+||++|+.+... ....+.++.... .....++|.+|.+++.
T Consensus 244 a~~l~i--------~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii~ 298 (420)
T PRK09472 244 AYAFGT--------P-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVIE 298 (420)
T ss_pred HHHhCc--------C-----------HHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHHH
Confidence 866531 1 46899999765432 233455553321 1125889999999999
Q ss_pred HHHHHHHHHHH-------HHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc------------CCCChhHH
Q 005099 380 DLLDRLKTPVE-------TSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV------------TVNPDEVV 440 (714)
Q Consensus 380 ~l~~~i~~~i~-------~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~------------~~np~eaV 440 (714)
+.++++.+.++ ..|.++++....++.|+|+||+|++|.|++++++.|+.++.. ..+|..++
T Consensus 299 ~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~at 378 (420)
T PRK09472 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYST 378 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHH
Confidence 97666666665 455667777778899999999999999999999999865432 24899999
Q ss_pred HhHHHHHHhH
Q 005099 441 ALGAAVQAGV 450 (714)
Q Consensus 441 A~GAa~~aa~ 450 (714)
|.|.++|+..
T Consensus 379 a~Gl~~~~~~ 388 (420)
T PRK09472 379 AVGLLHYGKE 388 (420)
T ss_pred HHHHHHHhhh
Confidence 9999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.83 E-value=6.8e-19 Score=190.51 Aligned_cols=205 Identities=27% Similarity=0.421 Sum_probs=168.5
Q ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecC
Q 005099 213 VVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 292 (714)
Q Consensus 213 VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~g 292 (714)
++|+|..+ -+.+.+|.+.+|+++..++.+|.|+|.+.+.+...+..++++|+||||+|+++++-+.-.+ .+
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~-----~~ 229 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY-----TG 229 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE-----Ee
Confidence 55665544 5678899999999999999999999999998877789999999999999999998443222 45
Q ss_pred CCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce------eeeeccccccCCCCCceeE
Q 005099 293 DTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ------TNISLPFITATADGPKHID 366 (714)
Q Consensus 293 d~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~------~~i~i~~~~~~~~g~~~~~ 366 (714)
...+||++++..|..-|... +..||++|........ ..+.++....+ ..
T Consensus 230 ~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~ 284 (418)
T COG0849 230 VIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD------IP 284 (418)
T ss_pred eEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc------cc
Confidence 57999999999998877554 4689999999875432 33555544322 25
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc------------CC
Q 005099 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV------------TV 434 (714)
Q Consensus 367 ~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~------------~~ 434 (714)
..+||.++.+++++.++++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.++.. ..
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhcc
Confidence 789999999999999999999999999999988667789999999999999999999999764321 23
Q ss_pred CChhHHHhHHHHHHhHh
Q 005099 435 NPDEVVALGAAVQAGVL 451 (714)
Q Consensus 435 np~eaVA~GAa~~aa~l 451 (714)
+|..+.|.|..++++.+
T Consensus 365 ~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 365 NPAFSTAVGLLLYGALM 381 (418)
T ss_pred CchhhhhHHHHHHHhhc
Confidence 68999999999998863
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.74 E-value=8e-17 Score=176.60 Aligned_cols=308 Identities=19% Similarity=0.196 Sum_probs=194.1
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC---------CCEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---------GDRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
.|.||+||.++++++..++.|.++ +||+|+...+ ...++|..|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 378999999999999877656544 5777776533 356677766432100
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
. ..-.+|+ .+| .+.-.+.+..+++++....... ...-..+++++|..++..+|+.+
T Consensus 59 -~------~~~~~P~-----~~G-----------~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 59 -G------LELIYPI-----EHG-----------IVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred -c------eEEcccc-----cCC-----------EEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHH
Confidence 0 0011121 112 1223345556666666542211 12235799999999998888888
Q ss_pred HH-HHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHH
Q 005099 229 KD-AGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 229 ~~-Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
.+ +.+..|+..+.++++|.+|+++++. .+.+|+|+|+++++++.+.- |.. +........+||+++|+.|.+
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~ 186 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKE 186 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC-----CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHH
Confidence 76 4677899999999999999999875 57899999999999887763 322 222233468999999999999
Q ss_pred HHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee---e-----eeccccccCCCCCceeEEEecHHHHHHHHH
Q 005099 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT---N-----ISLPFITATADGPKHIDTTLTRVKFEELCS 379 (714)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~---~-----i~i~~~~~~~~g~~~~~~~itr~efe~l~~ 379 (714)
++..+... .+.. .-...++.+|+.+...... . ...........-+....+.++.+.| .+.+
T Consensus 187 ~l~~~~~~---~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~-~~~E 255 (371)
T cd00012 187 LLRERGYE---LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERF-RAPE 255 (371)
T ss_pred HHHhcCCC---ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHh-hChH
Confidence 98765421 1111 1134567777765432110 0 0000000000001123456665544 3333
Q ss_pred HHHH---------HHHHHHHHHHHHcCC--CCCCCCEEEEEcCCCCchhHHHHHHhhcCC----------CCCcCCCChh
Q 005099 380 DLLD---------RLKTPVETSLRDAKL--SFKDLDEVILVGGSTRIPAVQELVKKMTGR----------EPNVTVNPDE 438 (714)
Q Consensus 380 ~l~~---------~i~~~i~~~L~~a~~--~~~~i~~VvLvGGssrip~v~~~l~~~fg~----------~~~~~~np~e 438 (714)
.+++ .+.+.|.+++..... ...-++.|+|+||+|++|.+.+.|.+.+.. .+....+|..
T Consensus 256 ~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
T cd00012 256 ILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKY 335 (371)
T ss_pred hcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccc
Confidence 3333 677888888877532 223357899999999999999999988742 1234568889
Q ss_pred HHHhHHHHHHhH
Q 005099 439 VVALGAAVQAGV 450 (714)
Q Consensus 439 aVA~GAa~~aa~ 450 (714)
++-+||+++|..
T Consensus 336 ~aw~G~si~as~ 347 (371)
T cd00012 336 SVWLGGSILASL 347 (371)
T ss_pred cEEeCchhhcCc
Confidence 999999999865
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.69 E-value=7.8e-16 Score=168.96 Aligned_cols=305 Identities=19% Similarity=0.217 Sum_probs=186.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC--------CEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG--------DRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~--------~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
..|.||+||.++++++..+..|.++ +||+|+...++ ..++|..|.... .+.
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 4799999999999999877777666 68988876543 235676653210 000
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
.-.+|+ ....+.-.+.+..+++++...... ....-..+++|+|...+..+|+.+
T Consensus 61 ---------~~~~P~----------------~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~ 114 (373)
T smart00268 61 ---------ELKYPI----------------EHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKI 114 (373)
T ss_pred ---------eecCCC----------------cCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHH
Confidence 011121 112223446666777777664211 112235789999999999999999
Q ss_pred HHHH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHH
Q 005099 229 KDAG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 229 ~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
.+.+ +..|++-+.++++|.+|+++++ ..+.||+|+|+++++++.+. +|.. +.....-..+||.++|+.|.+
T Consensus 115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~ 186 (373)
T smart00268 115 LEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKE 186 (373)
T ss_pred HHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHH
Confidence 8876 5679999999999999999987 35789999999999999886 3322 222223358999999999999
Q ss_pred HHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce---eee----------eccccccCCCCCceeEEEecHHHH
Q 005099 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ---TNI----------SLPFITATADGPKHIDTTLTRVKF 374 (714)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~---~~i----------~i~~~~~~~~g~~~~~~~itr~ef 374 (714)
++...-. .+ ... .-...++.+|+.+..... ... ..+..+.-.+| . .+.+..+.|
T Consensus 187 ~l~~~~~-~~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg-~--~~~~~~er~ 253 (373)
T smart00268 187 LLSERGY-QF--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDG-N--TIKVGNERF 253 (373)
T ss_pred HHHhcCC-CC--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCC-C--EEEEChHHe
Confidence 9876211 01 111 112345666665432110 000 00000000011 1 233433333
Q ss_pred HHHHHHHH---------HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC------C--CCcCCC
Q 005099 375 EELCSDLL---------DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR------E--PNVTVN 435 (714)
Q Consensus 375 e~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~------~--~~~~~n 435 (714)
.+.+.++ ..+.+.|.++|..+..+ ..-.+.|+|+||+|++|.+.+.|.+.+.. + +....+
T Consensus 254 -~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~ 332 (373)
T smart00268 254 -RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPE 332 (373)
T ss_pred -eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCC
Confidence 2223233 35677777777765322 12236799999999999999999887721 1 222345
Q ss_pred ChhHHHhHHHHHHhH
Q 005099 436 PDEVVALGAAVQAGV 450 (714)
Q Consensus 436 p~eaVA~GAa~~aa~ 450 (714)
+..++=.||+++|..
T Consensus 333 ~~~~~W~G~silas~ 347 (373)
T smart00268 333 RKYSVWLGGSILASL 347 (373)
T ss_pred CccceEeCcccccCc
Confidence 566667787777654
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.65 E-value=3.7e-16 Score=147.69 Aligned_cols=196 Identities=26% Similarity=0.393 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCc
Q 005099 192 QVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGG 271 (714)
Q Consensus 192 ~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgG 271 (714)
.+.+.+++.+++.+|...+++.-++|..-.+...+...+..+.||++++..++||||||.-..++.. .|+|+|||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-----~VVDiGGG 150 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-----GVVDIGGG 150 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-----cEEEeCCC
Confidence 4678899999999999999999999999877777888889999999999999999999876665533 79999999
Q ss_pred ceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeee
Q 005099 272 TFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNIS 351 (714)
Q Consensus 272 T~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~ 351 (714)
|+-+|+++-.+-.| ..|..-||.++...|+- .++++ +++||..|+.-...
T Consensus 151 TTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG--------~ygi~-----------~EeAE~~Kr~~k~~------ 200 (277)
T COG4820 151 TTGISIVKKGKVIY-----SADEPTGGTHMTLVLAG--------NYGIS-----------LEEAEQYKRGHKKG------ 200 (277)
T ss_pred cceeEEEEcCcEEE-----eccCCCCceeEEEEEec--------ccCcC-----------HhHHHHhhhccccc------
Confidence 99999998666555 56688899877655432 24544 56788888652111
Q ss_pred ccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC
Q 005099 352 LPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN 431 (714)
Q Consensus 352 i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~ 431 (714)
+|.-..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+.+++.|+.++.
T Consensus 201 --------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~ 255 (277)
T COG4820 201 --------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVH 255 (277)
T ss_pred --------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccc
Confidence 11123468999999999999999854 56799999999999999999999999988
Q ss_pred cCCCChhHHHhHHHHH
Q 005099 432 VTVNPDEVVALGAAVQ 447 (714)
Q Consensus 432 ~~~np~eaVA~GAa~~ 447 (714)
.+-.|....-+|.|+-
T Consensus 256 ~P~~p~y~TPLgIA~s 271 (277)
T COG4820 256 LPQHPLYMTPLGIASS 271 (277)
T ss_pred cCCCcceechhhhhhc
Confidence 8888887777776653
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.54 E-value=1.6e-12 Score=140.34 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=138.8
Q ss_pred EEEEecCCCCHHHH-HHHHHHHHHc------C------CCeeEEechhHHHHHHcccccC--------CCceEEEEEeCC
Q 005099 212 AVVTVPAYFNDSQR-TATKDAGRIA------G------LDVLRIINEPTAASLAYGFEKK--------NNETILVFDLGG 270 (714)
Q Consensus 212 ~VITVPa~f~~~qR-~~l~~Aa~~A------G------l~~~~li~Ep~AAAlay~~~~~--------~~~~vLVvD~Gg 270 (714)
++...|..+-..++ +.+++..... | +..+.+++||.+|.+.+..+.. ....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34599998854453 6676654321 1 1346789999999887766421 246789999999
Q ss_pred cceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeee
Q 005099 271 GTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNI 350 (714)
Q Consensus 271 GT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i 350 (714)
||+|++++. ++.+ +...++....|..++.+.|.+++..+.. +..+. .. .++++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~~--~~-------~ie~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKEE---GASIT--PY-------MLEKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhCC---CCCCC--HH-------HHHHH---HHcC---cE
Confidence 999999986 3333 2333444789999999999999854432 22221 11 12222 1111 11
Q ss_pred eccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCC
Q 005099 351 SLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREP 430 (714)
Q Consensus 351 ~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~ 430 (714)
.+. . ... +.+ ++++.++++++++++.+.|+..+.+ ..+++.|+|+||++++ +++.|++.|+. +
T Consensus 254 ~~~----~---~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~ 316 (344)
T PRK13917 254 KLN----Q---KTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-V 316 (344)
T ss_pred EeC----C---Cce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-e
Confidence 110 0 011 222 4667789999999999988888864 3578999999999987 88999999975 3
Q ss_pred CcCCCChhHHHhHHHHHHhHhhCC
Q 005099 431 NVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 431 ~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
....||..|.|+|...+|..+.+.
T Consensus 317 ~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 317 EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred EEcCChHHHHHHHHHHHHHHHhcc
Confidence 667899999999999999876553
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.50 E-value=5.8e-12 Score=140.03 Aligned_cols=292 Identities=17% Similarity=0.148 Sum_probs=174.7
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC------------CEEecHHHHHhhhhCCCchHHHH
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG------------DRLVGQIAKRQAVVNPENTFFSV 143 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~------------~~~vG~~A~~~~~~~p~~~i~~~ 143 (714)
...|.||+|+.++++++..+..|.++ +||+|+...+. +.++|+.|...
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~------------ 63 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA------------ 63 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhC------------
Confidence 34799999999999999876677765 68888764331 23344443211
Q ss_pred hHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHH
Q 005099 144 KRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDS 223 (714)
Q Consensus 144 KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~ 223 (714)
.+...+.++-+...+.--+.+..+++++...... ....-..+++|.|..++..
T Consensus 64 --------------------------~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~ 116 (414)
T PTZ00280 64 --------------------------SKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPE 116 (414)
T ss_pred --------------------------cCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHH
Confidence 0001111121122233345566667665432111 1122246899999999999
Q ss_pred HHHHHHHHH-HHcCCCeeEEechhHHHHHHcccccC-----CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCC
Q 005099 224 QRTATKDAG-RIAGLDVLRIINEPTAASLAYGFEKK-----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 297 (714)
Q Consensus 224 qR~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~-----~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lG 297 (714)
+|+.+.+.+ +..+++-+.+.++|.++++++..... ...+-||+|+|.++++++-+.- |.. +.....-..+|
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~G 193 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLA 193 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--CEE-cccceEEecCc
Confidence 999987765 44588889999999999998743221 1345699999999999876652 322 11111235899
Q ss_pred hhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee-----------e--eeccccccCCCCCce
Q 005099 298 GDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT-----------N--ISLPFITATADGPKH 364 (714)
Q Consensus 298 G~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~-----------~--i~i~~~~~~~~g~~~ 364 (714)
|.++|+.|.++|.++.. .+... .....++.+|+.++..... . ........+..+...
T Consensus 194 G~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~ 263 (414)
T PTZ00280 194 GRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKP 263 (414)
T ss_pred HHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCc
Confidence 99999999999876421 11110 0123466677766532110 0 000000111111123
Q ss_pred eEEEecHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcC
Q 005099 365 IDTTLTRVKFEE---LCSDLL------DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTG 427 (714)
Q Consensus 365 ~~~~itr~efe~---l~~~l~------~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg 427 (714)
..+.|..+.|.. ++.|-+ ..+.+.|.++|.++..+ ..-.+.|+|+||+|.+|.+.+.|.+.+.
T Consensus 264 ~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 264 YTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred cEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 457777776643 333422 14567777777765432 2234689999999999999999998874
No 38
>PTZ00452 actin; Provisional
Probab=99.45 E-value=4.9e-12 Score=138.43 Aligned_cols=307 Identities=16% Similarity=0.143 Sum_probs=180.9
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhH
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKR 145 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Kr 145 (714)
+...|-||+|+.++++++.-+..|.++ +||+|....+. +.++|+.|...
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~-------------- 61 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAK-------------- 61 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhcc--------------
Confidence 556899999999999999988788766 67877765431 22344443210
Q ss_pred hhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHH
Q 005099 146 FIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQR 225 (714)
Q Consensus 146 llG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR 225 (714)
.+...+..+-+...+.-.+.+..++.|+...... ....-..+++|-|...+..+|
T Consensus 62 ------------------------~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~R 116 (375)
T PTZ00452 62 ------------------------RGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNR 116 (375)
T ss_pred ------------------------ccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHH
Confidence 0111122222222233344555666666432211 222335789999999999999
Q ss_pred HHHHHHH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHH
Q 005099 226 TATKDAG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 304 (714)
Q Consensus 226 ~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~ 304 (714)
+.+.+.+ +..+.+.+.+.+.|.+++++++. .+-||+|+|.+.++++-+. +|.. +.....-..+||.++++.
T Consensus 117 e~l~eilFE~~~vp~~~~~~~~~lslya~g~-----~tglVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~gG~~lt~~ 188 (375)
T PTZ00452 117 ERMTQIMFETFNTPCLYISNEAVLSLYTSGK-----TIGLVVDSGEGVTHCVPVF--EGHQ-IPQAITKINLAGRLCTDY 188 (375)
T ss_pred HHHHHHHhhccCCceEEEechHHHHHHHCCC-----ceeeeecCCCCcceEEEEE--CCEE-eccceEEeeccchHHHHH
Confidence 9887754 55688888999999999998864 3569999999999887654 3322 112222357999999999
Q ss_pred HHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee---ee-------eccccccCCCCCceeEEEecHHHH
Q 005099 305 IVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT---NI-------SLPFITATADGPKHIDTTLTRVKF 374 (714)
Q Consensus 305 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~---~i-------~i~~~~~~~~g~~~~~~~itr~ef 374 (714)
|.+.|..+ +..+.... . ...++.+|+.++..... .. ..+..+.-. ..-.+++..+.|
T Consensus 189 L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP---Dg~~i~l~~er~ 255 (375)
T PTZ00452 189 LTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP---DGNILTIKSQKF 255 (375)
T ss_pred HHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC---CCCEEEeehHHh
Confidence 99988543 11111110 0 12345566655422100 00 000001111 112456666666
Q ss_pred H---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC------C--CCcCCCC
Q 005099 375 E---ELCSDLL-----DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR------E--PNVTVNP 436 (714)
Q Consensus 375 e---~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~------~--~~~~~np 436 (714)
. -+++|-+ ..+.++|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|.+.+.. + +..+.++
T Consensus 256 ~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r 335 (375)
T PTZ00452 256 RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDR 335 (375)
T ss_pred cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCc
Confidence 2 2233322 23567777777765422 23347999999999999999999877621 1 1122344
Q ss_pred hhHHHhHHHHHHh
Q 005099 437 DEVVALGAAVQAG 449 (714)
Q Consensus 437 ~eaVA~GAa~~aa 449 (714)
..++=+|++++|.
T Consensus 336 ~~~aW~GgSilas 348 (375)
T PTZ00452 336 RFSAWIGGSIQCT 348 (375)
T ss_pred ceeEEECchhhcC
Confidence 4566667777765
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.45 E-value=3e-12 Score=141.62 Aligned_cols=310 Identities=22% Similarity=0.277 Sum_probs=181.4
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC----CEEecHHHHHhhhhCCCchHHHHhHhhCCCc
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG----DRLVGQIAKRQAVVNPENTFFSVKRFIGRKM 151 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~----~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~ 151 (714)
..+|-||+|+.++++++..+..|.++ +||+++..... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~--------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RS--------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GT---------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hh---------------
Confidence 46899999999999999866667655 68888876542 35677653210 00
Q ss_pred hhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHH
Q 005099 152 VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDA 231 (714)
Q Consensus 152 ~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~A 231 (714)
. ..+..+-+...+.-.+.+..+++++...... ....-..++++.|..++..+|+.+.+.
T Consensus 58 ----------~----------~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 58 ----------N----------LELRSPIENGVIVDWDALEEIWDYIFSNLLK-VDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ----------G----------EEEEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ----------h----------eeeeeeccccccccccccccccccccccccc-cccccceeeeeccccCCchhhhhhhhh
Confidence 0 0111111122223345556666666654211 122335799999999999999987665
Q ss_pred -HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHH
Q 005099 232 -GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310 (714)
Q Consensus 232 -a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~ 310 (714)
.+..+++-+.++++|.+|+++++.. +-||+|+|.+.+.|+-+. +|.. +........+||.++++.|.++|.
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~-----tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~ 188 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT-----TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLK 188 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS-----SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc-----cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHHHH
Confidence 4567999999999999999999865 559999999999887663 3322 111222358999999999999998
Q ss_pred hc-ccc--ccCCCch----hcHHHHHHHHHHHHHhhhhcCC---------------CceeeeeccccccCCCCCceeEEE
Q 005099 311 SN-FKR--DEGIDLL----KDKQALQRLTETAEKAKMELSS---------------LTQTNISLPFITATADGPKHIDTT 368 (714)
Q Consensus 311 ~~-~~~--~~~~~~~----~~~~~~~rL~~~~e~aK~~Ls~---------------~~~~~i~i~~~~~~~~g~~~~~~~ 368 (714)
.+ +.- .+..... ...-....-....+.+|+.+.. .....+.+| ++ ..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~~i~ 259 (393)
T PF00022_consen 189 ERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---QTII 259 (393)
T ss_dssp HT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---SEEE
T ss_pred hhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---cccc
Confidence 84 110 0000000 0000000112223334433221 111222222 11 2456
Q ss_pred ecHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCC--CCCEEEEEcCCCCchhHHHHHHhhcCC--
Q 005099 369 LTRVKFEELCSDLLD----------------RLKTPVETSLRDAKLSFK--DLDEVILVGGSTRIPAVQELVKKMTGR-- 428 (714)
Q Consensus 369 itr~efe~l~~~l~~----------------~i~~~i~~~L~~a~~~~~--~i~~VvLvGGssrip~v~~~l~~~fg~-- 428 (714)
+..+.| .+.+.+|+ .+.+.|.+++.....+.. -.+.|+|+||+|++|.+.+.|.+.+..
T Consensus 260 ~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~ 338 (393)
T PF00022_consen 260 LGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLL 338 (393)
T ss_dssp ESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHS
T ss_pred cccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhh
Confidence 665555 33344433 467778888877543211 137899999999999999999877622
Q ss_pred ------CCCcCC-CChhHHHhHHHHHHhH
Q 005099 429 ------EPNVTV-NPDEVVALGAAVQAGV 450 (714)
Q Consensus 429 ------~~~~~~-np~eaVA~GAa~~aa~ 450 (714)
++.... +|..++=.||+++|..
T Consensus 339 ~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 339 PSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp GTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hccccceeccCchhhhhcccccceeeecc
Confidence 122333 7899999999999875
No 40
>PTZ00004 actin-2; Provisional
Probab=99.39 E-value=1.9e-11 Score=134.29 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=180.5
Q ss_pred cccCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHH
Q 005099 72 RVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFS 142 (714)
Q Consensus 72 ~~~~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~ 142 (714)
+......|.||+|+.++++++..+..|.++ +||+|+...+. ..++|+.+... .
T Consensus 2 ~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~----- 63 (378)
T PTZ00004 2 SVEETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----R----- 63 (378)
T ss_pred CCCCCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc-----c-----
Confidence 333556899999999999999877777655 67877764331 23445443210 0
Q ss_pred HhHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcC--CCcCeEEEEecCCC
Q 005099 143 VKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLN--DSVTKAVVTVPAYF 220 (714)
Q Consensus 143 ~KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~--~~v~~~VITVPa~f 220 (714)
+...+..+-+...+.--+....++.++... .++ ..-..+++|-|..+
T Consensus 64 ----------------------------~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~ 112 (378)
T PTZ00004 64 ----------------------------GILTLKYPIEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLN 112 (378)
T ss_pred ----------------------------ccceEcccCcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCC
Confidence 000111111112222334555666664321 222 22346789999999
Q ss_pred CHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChh
Q 005099 221 NDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 299 (714)
Q Consensus 221 ~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~ 299 (714)
+..+|+.+.+. .+..+++.+.++++|.+++++++. .+-||+|+|.+.++++-+. +|.. +.....-.++||.
T Consensus 113 ~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG~ 184 (378)
T PTZ00004 113 PKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAGR 184 (378)
T ss_pred cHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-----ceEEEEECCCCcEEEEEEE--CCEE-eecceeeecccHH
Confidence 99999877665 556799999999999999998864 3669999999999887664 3322 1222233579999
Q ss_pred HHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc-----------------eeeeeccccccCCCCC
Q 005099 300 DFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT-----------------QTNISLPFITATADGP 362 (714)
Q Consensus 300 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~-----------------~~~i~i~~~~~~~~g~ 362 (714)
++++.|.+.|..+.. ....... ...++.+|+.+.... .....+| +|
T Consensus 185 ~lt~~L~~lL~~~~~---~~~~~~~-------~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP------dg- 247 (378)
T PTZ00004 185 DLTEYMMKILHERGT---TFTTTAE-------KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP------DG- 247 (378)
T ss_pred HHHHHHHHHHHhcCC---CCCcHHH-------HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC------CC-
Confidence 999999999865421 1111111 223555665543211 0111111 11
Q ss_pred ceeEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC---
Q 005099 363 KHIDTTLTRVKFE---ELCSDL------LDRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR--- 428 (714)
Q Consensus 363 ~~~~~~itr~efe---~l~~~l------~~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~--- 428 (714)
-.+.+..+.|. -++.|- ...+.+.|.+++.++..+ ..-...|+|+||+|.+|.+.++|...+..
T Consensus 248 --~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p 325 (378)
T PTZ00004 248 --TIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAP 325 (378)
T ss_pred --CEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCC
Confidence 23555555542 244442 224567777777765422 22246899999999999999999887631
Q ss_pred -C----CCcCCCChhHHHhHHHHHHh
Q 005099 429 -E----PNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 429 -~----~~~~~np~eaVA~GAa~~aa 449 (714)
. +....++..++=+||+++|.
T Consensus 326 ~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 326 STMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred CCccEEEecCCCCceeEEECcccccC
Confidence 1 22233455666667776654
No 41
>PTZ00281 actin; Provisional
Probab=99.38 E-value=1.6e-11 Score=134.68 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=179.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhHhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 147 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Krll 147 (714)
..|-||+|+.++++++..+..|..+ +||+|+...+. ..++|+.+...
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~---------------- 62 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK---------------- 62 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhcc----------------
Confidence 4789999999999999877777655 67777654331 22344433210
Q ss_pred CCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHH
Q 005099 148 GRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTA 227 (714)
Q Consensus 148 G~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~ 227 (714)
.+...+..+-+...+.-.+....++.++..... .....-..+++|-|..+...+|+.
T Consensus 63 ----------------------~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~ 119 (376)
T PTZ00281 63 ----------------------RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREK 119 (376)
T ss_pred ----------------------ccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHH
Confidence 000111111112222334455556666543211 112223578999999999999999
Q ss_pred HHH-HHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHH
Q 005099 228 TKD-AGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306 (714)
Q Consensus 228 l~~-Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 306 (714)
+.+ ..+..++.-+.+.+.|.+++++++. .+-||+|+|.+.+.++-+.- |.. +........+||.++++.|.
T Consensus 120 l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~PV~d--G~~-~~~~~~~~~~GG~~lt~~L~ 191 (376)
T PTZ00281 120 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDYMM 191 (376)
T ss_pred HHHHHhcccCCceeEeeccHHHHHHhcCC-----ceEEEEECCCceEEEEEEEe--ccc-chhheeeccCcHHHHHHHHH
Confidence 877 4566788889999999999998764 36699999999998764432 211 22222235899999999999
Q ss_pred HHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce------------eeeeccccccCCCCCceeEEEecHHHH
Q 005099 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ------------TNISLPFITATADGPKHIDTTLTRVKF 374 (714)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~------------~~i~i~~~~~~~~g~~~~~~~itr~ef 374 (714)
+.|..+- ..+.. .. -...++.+|+.++.... ......+... + ...++|..+.|
T Consensus 192 ~lL~~~~-----~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP--d---g~~i~i~~er~ 256 (376)
T PTZ00281 192 KILTERG-----YSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP--D---GQVITIGNERF 256 (376)
T ss_pred HHHHhcC-----CCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC--C---CCEEEeeHHHe
Confidence 9886541 11110 00 02345666766542110 0000011111 1 12355655544
Q ss_pred ---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC------C--CCcCCCC
Q 005099 375 ---EELCSDLL-----DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR------E--PNVTVNP 436 (714)
Q Consensus 375 ---e~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~------~--~~~~~np 436 (714)
|-+++|-+ ..+.+.|.+++.++..+ ..-.+.|+|+||+|.+|.+.++|++.+.. + +..+.++
T Consensus 257 ~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r 336 (376)
T PTZ00281 257 RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPER 336 (376)
T ss_pred eCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCC
Confidence 22333322 14567777777765322 12236899999999999999999877631 1 2223355
Q ss_pred hhHHHhHHHHHHhH
Q 005099 437 DEVVALGAAVQAGV 450 (714)
Q Consensus 437 ~eaVA~GAa~~aa~ 450 (714)
..++=+|++++|..
T Consensus 337 ~~~aW~Ggsilasl 350 (376)
T PTZ00281 337 KYSVWIGGSILASL 350 (376)
T ss_pred ceeEEECcccccCc
Confidence 66777788777653
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.38 E-value=3.9e-11 Score=130.55 Aligned_cols=179 Identities=19% Similarity=0.251 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcc-----cc-cCCCc-eEEEEEeCCcceEEEEEEEcCceEEEEEecCC
Q 005099 221 NDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG-----FE-KKNNE-TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 293 (714)
Q Consensus 221 ~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~-----~~-~~~~~-~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd 293 (714)
.....+.+.++++.||+++..+..+|.|.+-.+. .. ..... .++++|+|++++++++++-+...+ ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEE
Confidence 3456788899999999999999999999876662 11 11233 499999999999999997443333 344
Q ss_pred CCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHH
Q 005099 294 THLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVK 373 (714)
Q Consensus 294 ~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~e 373 (714)
..+||.+|++.|.+.+ +++ ..+||+.|....... ..
T Consensus 216 i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------------~~-------- 251 (348)
T TIGR01175 216 VPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------------LY-------- 251 (348)
T ss_pred eechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------------ch--------
Confidence 6899999999987543 222 467888887532110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc-------------------
Q 005099 374 FEELCSDLLDRLKTPVETSLRDA--KLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV------------------- 432 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a--~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~------------------- 432 (714)
-.+++++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+.++..
T Consensus 252 ~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~ 331 (348)
T TIGR01175 252 DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLA 331 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHH
Confidence 02345566666666666666532 223346899999999999999999999999854321
Q ss_pred CCCChhHHHhHHHHHH
Q 005099 433 TVNPDEVVALGAAVQA 448 (714)
Q Consensus 433 ~~np~eaVA~GAa~~a 448 (714)
..+|..++|.|+|+++
T Consensus 332 ~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 332 VDAPALMTALGLALRG 347 (348)
T ss_pred hhhHHHHHHhhHhhcC
Confidence 1345678888888764
No 43
>PTZ00466 actin-like protein; Provisional
Probab=99.33 E-value=8.2e-11 Score=128.97 Aligned_cols=302 Identities=16% Similarity=0.168 Sum_probs=178.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhHhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 147 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Krll 147 (714)
..|-||+|+.++++++..+..|.++ +||+|+..... ..++|..|....
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~--------------- 69 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR--------------- 69 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC---------------
Confidence 4688999999999999977777765 67777664321 233444442110
Q ss_pred CCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHH
Q 005099 148 GRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTA 227 (714)
Q Consensus 148 G~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~ 227 (714)
+...+.++-+...+.--+....+++++.+... ....-..+++|-|..+...+|+.
T Consensus 70 -----------------------~~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~ 124 (380)
T PTZ00466 70 -----------------------GLLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEK 124 (380)
T ss_pred -----------------------cCceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHH
Confidence 00011111112223334455556666543211 12223468899999999999999
Q ss_pred HHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHH
Q 005099 228 TKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306 (714)
Q Consensus 228 l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 306 (714)
+.+. .+..+++-+.+.+.|.+++++++. .+-+|+|+|.+.+.++-+. +|.. +........+||.++++.|.
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-----~tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~ 196 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCGK-----TNGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLG 196 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcCC-----ceEEEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHH
Confidence 7664 566788889999999999998864 3679999999999886554 3322 22222235899999999999
Q ss_pred HHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc-----------eeeeeccccccCCCCCceeEEEecHHHHH
Q 005099 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT-----------QTNISLPFITATADGPKHIDTTLTRVKFE 375 (714)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~-----------~~~i~i~~~~~~~~g~~~~~~~itr~efe 375 (714)
+.|.+.- +..+... -+..++.+|+.++... ......++... ....+.|..+.|.
T Consensus 197 ~lL~~~~---~~~~~~~-------~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP-----dg~~i~l~~er~~ 261 (380)
T PTZ00466 197 YLLRKNG---HLFNTSA-------EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP-----DGSQILIGSERYR 261 (380)
T ss_pred HHHHhcC---CCCCcHH-------HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC-----CCcEEEEchHHhc
Confidence 9886421 1111111 1234555666543211 00000111111 1134566666662
Q ss_pred ---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC----C----CCcCCCCh
Q 005099 376 ---ELCSDLL-----DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR----E----PNVTVNPD 437 (714)
Q Consensus 376 ---~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~----~----~~~~~np~ 437 (714)
-++.|-+ ..+.+.|.+.+.++..+ +.-...|+|+||+|.+|.+.+.|++.+.. . +....++.
T Consensus 262 ~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~ 341 (380)
T PTZ00466 262 APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERK 341 (380)
T ss_pred CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCc
Confidence 2333321 14566777777765432 22347899999999999999999887732 1 22233455
Q ss_pred hHHHhHHHHHHh
Q 005099 438 EVVALGAAVQAG 449 (714)
Q Consensus 438 eaVA~GAa~~aa 449 (714)
.++=+|++++|.
T Consensus 342 ~~aW~GgSilas 353 (380)
T PTZ00466 342 FSTFIGGSILAS 353 (380)
T ss_pred eeEEECchhhcC
Confidence 566667777765
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.28 E-value=1.4e-10 Score=124.43 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=129.3
Q ss_pred CcCeEEEEecCCCCHHHHHHHHHHHHHc---------CCCeeEEechhHHHHHHccccc----CCCceEEEEEeCCcceE
Q 005099 208 SVTKAVVTVPAYFNDSQRTATKDAGRIA---------GLDVLRIINEPTAASLAYGFEK----KNNETILVFDLGGGTFD 274 (714)
Q Consensus 208 ~v~~~VITVPa~f~~~qR~~l~~Aa~~A---------Gl~~~~li~Ep~AAAlay~~~~----~~~~~vLVvD~GgGT~D 274 (714)
.+..+|+..|..+...|++.+++...-. -+..+.+++||.+|.+.+..+. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999999999999876532 2245788999999988876532 13567899999999999
Q ss_pred EEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccc
Q 005099 275 VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPF 354 (714)
Q Consensus 275 vsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~ 354 (714)
+.++. +..+ +...++....|-.++-+.|.+.+.+++... ...+...+.. ..+.-|.. .+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~----~~~~~~~i~~---~l~~g~~~---------~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTP----AYRDIDRIDL---ALRTGKQP---------RI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCC----CccCHHHHHH---HHHhCCce---------ee--
Confidence 97764 4444 444555678999999999988888776432 0011111111 11111100 00
Q ss_pred cccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCCcC
Q 005099 355 ITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPNVT 433 (714)
Q Consensus 355 ~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~~~ 433 (714)
+ + +. +.|+ +.++ .....++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+. .+...
T Consensus 240 -~-g----k~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 240 -Y-Q----KP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -c-c----ee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 0 0 11 1121 1122 233333334333333332 1246889999999998 567889999975 34467
Q ss_pred CCChhHHHhHHHHHH
Q 005099 434 VNPDEVVALGAAVQA 448 (714)
Q Consensus 434 ~np~eaVA~GAa~~a 448 (714)
.||..|.|+|-..++
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 899999999987665
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.27 E-value=9.1e-11 Score=127.07 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=121.5
Q ss_pred HHHHHHHhhcCCCcCeEEE--------------------EecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHccc
Q 005099 196 KLVDDASKFLNDSVTKAVV--------------------TVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255 (714)
Q Consensus 196 ~l~~~a~~~~~~~v~~~VI--------------------TVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~ 255 (714)
.+...+++++..++.++++ ++| ....+...++++.|||++..+=-+|.|.+-.|..
T Consensus 93 ~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~ 168 (340)
T PF11104_consen 93 AIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFEF 168 (340)
T ss_dssp HHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHH
T ss_pred HHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHH
Confidence 3455667777766655433 222 3456677889999999998887777776554433
Q ss_pred c------cCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHH
Q 005099 256 E------KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQ 329 (714)
Q Consensus 256 ~------~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~ 329 (714)
. ......++++|+|+.++.++++.-+...| .....+||.++++.|.+.+.-.
T Consensus 169 ~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~~G~~~l~~~i~~~~~i~----------------- 226 (340)
T PF11104_consen 169 LEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIPIGGNDLTEAIARELGID----------------- 226 (340)
T ss_dssp HHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHTT-------------------
T ss_pred HHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEeeCHHHHHHHHHHhcCCC-----------------
Confidence 2 11246899999999999999987443333 3346899999999998764322
Q ss_pred HHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCEEE
Q 005099 330 RLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD--AKLSFKDLDEVI 407 (714)
Q Consensus 330 rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~--a~~~~~~i~~Vv 407 (714)
..+||+.|..-+-.. +...+.+.+.++++..-|.+.++- .......|+.|+
T Consensus 227 --~~~Ae~~k~~~~l~~-------------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~ 279 (340)
T PF11104_consen 227 --FEEAEELKRSGGLPE-------------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIY 279 (340)
T ss_dssp --HHHHHHHHHHT-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEE
T ss_pred --HHHHHHHHhcCCCCc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 356777776521000 223345556666666666666652 223346799999
Q ss_pred EEcCCCCchhHHHHHHhhcCCCCC---------cCC----------CChhHHHhHHHHHH
Q 005099 408 LVGGSTRIPAVQELVKKMTGREPN---------VTV----------NPDEVVALGAAVQA 448 (714)
Q Consensus 408 LvGGssrip~v~~~l~~~fg~~~~---------~~~----------np~eaVA~GAa~~a 448 (714)
|+||++++|.+.+.|.+.++.++. ... .|..++|.|.|+..
T Consensus 280 L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 280 LSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp EESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 999999999999999999986432 111 36788999999864
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.06 E-value=3.8e-09 Score=113.21 Aligned_cols=173 Identities=20% Similarity=0.336 Sum_probs=98.6
Q ss_pred CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccccc
Q 005099 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDE 317 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 317 (714)
..+.+++||.||.+.+..+..+...+||+|+||+|+|++++.- +.-.+....+...+|-..+-..+.+.|...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~----- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA----- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT-------
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-----
Confidence 4568899999999998877555678999999999999998862 211222334446789988888887776552
Q ss_pred CCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005099 318 GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAK 397 (714)
Q Consensus 318 ~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~ 397 (714)
+... +......+.. .+. . ...+. ....+ . -..+++.++++..++++.+.|.+.+.+
T Consensus 214 ~~~~--s~~~~~~ii~----~~~---~--~~~~~--~~i~~----~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 214 GIDT--SELQIDDIIR----NRK---D--KGYLR--QVIND----E-----DVIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp SBHH--HHHHHHHHHH----TTT------HHHHH--HHSSS----H-----HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred cCCC--cHHHHHHHHH----hhh---c--cceec--ccccc----h-----hhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 1111 1111111111 000 0 00000 00000 0 012344455555555555555555543
Q ss_pred CCCCCCCEEEEEcCCCCchhHHHHHHhhcC---CCCCcCCCChhHHHhHHH
Q 005099 398 LSFKDLDEVILVGGSTRIPAVQELVKKMTG---REPNVTVNPDEVVALGAA 445 (714)
Q Consensus 398 ~~~~~i~~VvLvGGssrip~v~~~l~~~fg---~~~~~~~np~eaVA~GAa 445 (714)
..+++.|+||||++. .+.+.|++.|+ ..+...-||+.|-|+|-+
T Consensus 270 --~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 346789999999985 56788888886 356678899999999964
No 47
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.98 E-value=3.9e-08 Score=102.45 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=123.5
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEe----c----CCCEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT----K----NGDRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~----~----~~~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
..|-||.|+-.++++|....-|..+ +||++... . .+..+++..|...
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~----------------- 66 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV----------------- 66 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC-----------------
Confidence 5789999999999999988777766 68888752 1 1122444433110
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
+ +....|....+...+.--+++.++++|..+.-.+ .+..-.-++||-|++=+.+.|+.+
T Consensus 67 -p-------------------r~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~ 125 (426)
T KOG0679|consen 67 -P-------------------RPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKL 125 (426)
T ss_pred -C-------------------CCCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHH
Confidence 0 0111111111122334557778888887754322 233335689999999989999887
Q ss_pred HHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHH
Q 005099 229 KDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 229 ~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
.+. .+...++...|+.+|+++|++.+. .+.||+|+|++++.++=+. +|.+--.+... ..+||+.++..+.+
T Consensus 126 ~ElmFE~~nvPAf~L~k~~v~~AFA~Gr-----stalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q 197 (426)
T KOG0679|consen 126 TELMFEKLNVPAFYLAKTAVCTAFANGR-----STALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQ 197 (426)
T ss_pred HHHHHhhcCCceEEEechHHHHHHhcCC-----CceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHH
Confidence 665 566678888999999999998874 4679999999999777553 44333333333 68999999999999
Q ss_pred HHHhc
Q 005099 308 WLASN 312 (714)
Q Consensus 308 ~l~~~ 312 (714)
.|..+
T Consensus 198 ~l~~~ 202 (426)
T KOG0679|consen 198 LLEPK 202 (426)
T ss_pred HHhhc
Confidence 98875
No 48
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.94 E-value=3e-08 Score=102.55 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=105.4
Q ss_pred EEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCC
Q 005099 241 RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGID 320 (714)
Q Consensus 241 ~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~ 320 (714)
..++|-+|-+.....-..+.+ .|+|+||..+-+..++ ++.+.-.........|+..|.+.+++.+-- +
T Consensus 73 ~~~~ei~~~~~g~~~~~~~~~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~--------~ 140 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPEAR--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGV--------S 140 (248)
T ss_pred CceEEhhHHHHHHHHHCCCCC--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCC--------C
Confidence 357788776554433222222 5999999987776666 555443344555678888888888776532 2
Q ss_pred chhcHHHHHHHHHHHHHhhhhcCCC----ceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005099 321 LLKDKQALQRLTETAEKAKMELSSL----TQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDA 396 (714)
Q Consensus 321 ~~~~~~~~~rL~~~~e~aK~~Ls~~----~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a 396 (714)
.++++.+|..-... ....+..+.-.. ..+.-..+ .++++..+++.+...+.+.+...
T Consensus 141 -----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi-----~~l~~g~~---~~di~~~~~~~va~~i~~~~~~~ 201 (248)
T TIGR00241 141 -----------VEELGSLAEKADRKAKISSMCTVFAESELI-----SLLAAGVK---KEDILAGVYESIAERVAEMLQRL 201 (248)
T ss_pred -----------HHHHHHHHhcCCCCCCcCCEeEEEechhHH-----HHHHCCCC---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 22344443331110 011111110000 00000112 34667777777777777766553
Q ss_pred CCCCCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHH
Q 005099 397 KLSFKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 397 ~~~~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~ 446 (714)
+ ++ .|+|+||.+++|.+.+.+.+.++.++..+.+|..+.|+|||+
T Consensus 202 ~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 202 K-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred C-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 3 44 799999999999999999999999999999999999999997
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=2.4e-07 Score=95.45 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=105.7
Q ss_pred HHHHHHHHHHcCCCeeEEechhHHHHHHccccc-----C-CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCCh
Q 005099 225 RTATKDAGRIAGLDVLRIINEPTAASLAYGFEK-----K-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 298 (714)
Q Consensus 225 R~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~-----~-~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG 298 (714)
.....+|++.|||+...+=-|..|.--+|..-. . ..-+++|+|+|+..+.+.++.-+...| ..+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCcH
Confidence 445678999999998877778888766665211 1 123479999999999999988665555 55688999
Q ss_pred hHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHH
Q 005099 299 DDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELC 378 (714)
Q Consensus 299 ~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~ 378 (714)
+++++.+.+.+- .+ ...++.+|.....-. +.-.++.
T Consensus 226 ~Qlt~~i~r~~~--------L~-----------~~~a~~~k~~~~~P~-------------------------~y~~~vl 261 (354)
T COG4972 226 DQLTQEIQRAYS--------LT-----------EEKAEEIKRGGTLPT-------------------------DYGSEVL 261 (354)
T ss_pred HHHHHHHHHHhC--------CC-----------hhHhHHHHhCCCCCC-------------------------chhHHHH
Confidence 999999876532 22 345667776533211 1112344
Q ss_pred HHHHHHHHHHHHHHH----HHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCC
Q 005099 379 SDLLDRLKTPVETSL----RDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRE 429 (714)
Q Consensus 379 ~~l~~~i~~~i~~~L----~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~ 429 (714)
.++++.+.+.|.+.| ... ...+|+.|+|.||++.+-.+.+.+.+.++.+
T Consensus 262 ~~f~~~l~~ei~Rslqfy~~~s--~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 262 RPFLGELTQEIRRSLQFYLSQS--EMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--ccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 444444444444444 444 3467999999999999999999999998753
No 50
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.78 E-value=6e-07 Score=99.45 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=117.3
Q ss_pred EEEEEcCccceEEEEEECCeeEEE-eCCCCCcc-ceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIV-TNAEGQRT-TPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii-~n~~g~~~-~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
.|-||.||-++++++..+..|..+ ++-.+.+. +.++..-...+...+|..+.....
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~---------------------- 65 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRD---------------------- 65 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccC----------------------
Confidence 389999999999999988778655 33333222 222222111223444444421100
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHH-HhhcCCCcCeEEEEecCCCCHHHHHHHHH-HHH
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDA-SKFLNDSVTKAVVTVPAYFNDSQRTATKD-AGR 233 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a-~~~~~~~v~~~VITVPa~f~~~qR~~l~~-Aa~ 233 (714)
.....+..+.+...+.--+....+++++...- .......-..+++|-|..+...+|+.+.+ ..+
T Consensus 66 --------------~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 66 --------------NSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred --------------CccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHH
Confidence 00111222222222333344455555555442 11111222479999999999999988765 456
Q ss_pred HcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~ 313 (714)
...+.-+.+..++.++.++.+... .+.+|+|+|.+.++|+=+-- |.. +.....-..+||++++..|.+.|....
T Consensus 132 ~~~vp~~~~~~~~~l~~ya~g~~~---~~g~ViD~G~~~t~v~PV~D--G~~-l~~a~~ri~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 132 TLNVPALYLAIQAVLSLYASGSSD---ETGLVIDSGDSVTHVIPVVD--GIV-LPKAVKRIDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred hcCCcceEeeHHHHHHHHhcCCCC---CceEEEEcCCCceeeEeeec--ccc-ccccceeeecCcHHHHHHHHHHHhhcc
Confidence 667788888888888888877653 47899999999998875542 221 122223368999999999999998853
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.50 E-value=1.2e-05 Score=94.62 Aligned_cols=271 Identities=18% Similarity=0.265 Sum_probs=163.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCC--------------CcCeEEEEecCCCCHHHHHHHHHHHHHc--------CCC--
Q 005099 183 QFAAEEISAQVLRKLVDDASKFLND--------------SVTKAVVTVPAYFNDSQRTATKDAGRIA--------GLD-- 238 (714)
Q Consensus 183 ~~~~eev~a~~L~~l~~~a~~~~~~--------------~v~~~VITVPa~f~~~qR~~l~~Aa~~A--------Gl~-- 238 (714)
.||=..++.++|..|..+|.-+.+. ....+++|||......+|+.++++++.| |+.
T Consensus 416 ~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~ 495 (1002)
T PF07520_consen 416 HYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPW 495 (1002)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4666788888888888888765553 3457999999999999999999888775 431
Q ss_pred -------------------eeEEechhHHHHHHcccc---------------------cC--------CCceEEEEEeCC
Q 005099 239 -------------------VLRIINEPTAASLAYGFE---------------------KK--------NNETILVFDLGG 270 (714)
Q Consensus 239 -------------------~~~li~Ep~AAAlay~~~---------------------~~--------~~~~vLVvD~Gg 270 (714)
+..=-+|.||.-+-|++. .. +.-+|.-+|+||
T Consensus 496 ~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGG 575 (1002)
T PF07520_consen 496 DDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGG 575 (1002)
T ss_pred CCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCC
Confidence 111236777765555432 00 024689999999
Q ss_pred cceEEEEEEEc----Cc-eEEE----EEecCCCCCChhHHHHHHHHH-HHhcccc----------------ccCCCchh-
Q 005099 271 GTFDVSVLEVG----DG-VFEV----LSTSGDTHLGGDDFDKRIVDW-LASNFKR----------------DEGIDLLK- 323 (714)
Q Consensus 271 GT~Dvsv~~~~----~~-~~~v----l~~~gd~~lGG~d~D~~l~~~-l~~~~~~----------------~~~~~~~~- 323 (714)
||||+.|-.+. .+ ...+ +-..| -.+.|+||=..+++. +...+.. -+|.+-..
T Consensus 576 GTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~ 654 (1002)
T PF07520_consen 576 GTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSD 654 (1002)
T ss_pred CcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhH
Confidence 99999987765 22 1212 12234 578888886665543 3322221 11211000
Q ss_pred cHH-------------HHHHHHHHHHHhhhh-------------cCCCceeeeeccccccCC----CC-----CceeEEE
Q 005099 324 DKQ-------------ALQRLTETAEKAKME-------------LSSLTQTNISLPFITATA----DG-----PKHIDTT 368 (714)
Q Consensus 324 ~~~-------------~~~rL~~~~e~aK~~-------------Ls~~~~~~i~i~~~~~~~----~g-----~~~~~~~ 368 (714)
..+ ...+++.++|..-.. |.......--++++.... .| -.++.+.
T Consensus 655 ~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~ 734 (1002)
T PF07520_consen 655 QDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLE 734 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEE
Confidence 000 112355666654321 110000000001111000 11 1345678
Q ss_pred ecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC--------------
Q 005099 369 LTRVKFEELCS---DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN-------------- 431 (714)
Q Consensus 369 itr~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~-------------- 431 (714)
|+..++...+- -.+.+++..+-+++.. .+.|.++|+|--||+|.||..+++....++.
T Consensus 735 i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WY 809 (1002)
T PF07520_consen 735 IDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWY 809 (1002)
T ss_pred EcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecccc
Confidence 89999998774 5666666666666666 4467899999999999999999999865433
Q ss_pred ------cCCCChhHHHhHHHHHHhHhhCCCCCcE
Q 005099 432 ------VTVNPDEVVALGAAVQAGVLAGDVSDIV 459 (714)
Q Consensus 432 ------~~~np~eaVA~GAa~~aa~ls~~~~~~~ 459 (714)
..-||...||.||.+.+.......+++.
T Consensus 810 PF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~ 843 (1002)
T PF07520_consen 810 PFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFY 843 (1002)
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhccCCCCCce
Confidence 2349999999999876654332344443
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.45 E-value=1.2e-06 Score=95.63 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=60.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH------------cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEE
Q 005099 210 TKAVVTVPAYFNDSQRTATKDAGRI------------AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSV 277 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~Aa~~------------AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv 277 (714)
.-.+||.+...- +.++++++. ||+++..++. |.|++.+...+ ..+..++++|+||||+++++
T Consensus 89 ~ahIITg~~~~~----~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-Eke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 89 GAVIITGETARK----ENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-ERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred cEEEEEechhHH----HHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-hccCceEEEEeCCCceEEEE
Confidence 356888877654 445555554 6777777766 99999888754 56889999999999999999
Q ss_pred EEEcCceEEEEEecCCCCCChhHHHH
Q 005099 278 LEVGDGVFEVLSTSGDTHLGGDDFDK 303 (714)
Q Consensus 278 ~~~~~~~~~vl~~~gd~~lGG~d~D~ 303 (714)
+.-+.-.+ .++..+||+.++.
T Consensus 163 f~~G~l~~-----T~~l~vGG~~IT~ 183 (475)
T PRK10719 163 FDAGKVID-----TACLNVGGRLIET 183 (475)
T ss_pred EECCEEEE-----EEEEecccceEEE
Confidence 98554333 4557899987654
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.44 E-value=2.3e-05 Score=81.54 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC-cCCCChhHHHhHHHHHHhH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN-VTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~-~~~np~eaVA~GAa~~aa~ 450 (714)
+++.-+...+...+...++..++. ..|+|+||.++.|.+++.+++.++.++. .+.+|+.+-|+|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 344445555554444444443322 3689999999999999999999998877 5778999999999999864
No 54
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.43 E-value=1.6e-05 Score=83.74 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 374 FEELCSDLLDRLKTPVET-SLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~-~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.|+++..+...+.+-+-. +++...+. + -|+|+||.+....+.+++.+.++.++.++.+|+..-|+|||+++..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 566677777666655544 55553332 2 2999999999999999999999999999999999999999999864
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.37 E-value=2.3e-05 Score=84.64 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 375 EELCSDLLDRLKTPVET-SLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~-~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
++++.-+...+.+.+.. +++..++ -+.|+++||.++.+.+.+.+.+.++.++..+.+|+.+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i----~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDV----REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC----CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 34444555555544442 3444332 23599999999999999999999999999999999999999999985
No 56
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.27 E-value=8.5e-06 Score=86.91 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-----CCCCcCCCChhHHHhHHHHHH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-----REPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-----~~~~~~~np~eaVA~GAa~~a 448 (714)
+++.-+...+...+...+.+.. ..-..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 4444555555555555555431 112469999999999999999999994 557788999999999999975
No 57
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.16 E-value=2.9e-05 Score=83.34 Aligned_cols=210 Identities=19% Similarity=0.249 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCC
Q 005099 191 AQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGG 270 (714)
Q Consensus 191 a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~Gg 270 (714)
..+..|+...-.... .....+++|-|..+....|+.+-+..-.. |++..+.-.-.|..++++.. +=+|+|+|.
T Consensus 82 e~iw~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~qavlya~g~t-----tG~VvD~G~ 154 (372)
T KOG0676|consen 82 EKIWHHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAIQAVLYASGRT-----TGLVVDSGD 154 (372)
T ss_pred HHHHHHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHHHHHHHHcCCe-----eEEEEEcCC
Confidence 566666652222211 22257999999999999999887764432 34443332224434344433 459999999
Q ss_pred cceE-EEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc---
Q 005099 271 GTFD-VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT--- 346 (714)
Q Consensus 271 GT~D-vsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~--- 346 (714)
|-++ +-+++ | +.+...-....+||+|++..|...|.+. +........ ++-++.+|+.++...
T Consensus 155 gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~s~~~~~~-----~eIv~diKeklCyvald~ 220 (372)
T KOG0676|consen 155 GVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRKR-----GYSFTTSAE-----FEIVRDIKEKLCYVALDF 220 (372)
T ss_pred Cceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHhc-----ccccccccH-----HHHHHHhHhhhccccccc
Confidence 9664 44544 2 2233334457899999999888777761 111111100 122444454443211
Q ss_pred ---------eeeeeccccccCCCCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHc--CCCCCCCCEEE
Q 005099 347 ---------QTNISLPFITATADGPKHIDTTLTRVKFE---ELCSDLL-----DRLKTPVETSLRDA--KLSFKDLDEVI 407 (714)
Q Consensus 347 ---------~~~i~i~~~~~~~~g~~~~~~~itr~efe---~l~~~l~-----~~i~~~i~~~L~~a--~~~~~~i~~Vv 407 (714)
...+... +.-.+|.. +++.-+.|. -+++|-+ ..+.+.+-+.+.++ ++.+.-...|+
T Consensus 221 ~~e~~~~~~~~~l~~~--y~lPDg~~---i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~niv 295 (372)
T KOG0676|consen 221 EEEEETANTSSSLESS--YELPDGQK---ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIV 295 (372)
T ss_pred chhhhccccccccccc--ccCCCCCE---EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheE
Confidence 1111111 11112211 344333322 2222221 22333333433333 23333446899
Q ss_pred EEcCCCCchhHHHHHHhhc
Q 005099 408 LVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 408 LvGGssrip~v~~~l~~~f 426 (714)
|+||++.+|.+-+.|.+..
T Consensus 296 LsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 296 LSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred EeCCcccchhHHHHHHHHH
Confidence 9999999999999888765
No 58
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.14 E-value=0.00091 Score=68.81 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-C----CCcCCCChhHHHhHHHHHH
Q 005099 375 EELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-E----PNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~----~~~~~np~eaVA~GAa~~a 448 (714)
++++.-+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3445555555555555555543311 13599999999999999999998842 3 4456688999999999975
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=98.11 E-value=0.0011 Score=69.48 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=42.7
Q ss_pred CCCEEEEEc-CCCCchhHHHHHHhhc---CCCCCcCCCChhHHHhHHHHHHh
Q 005099 402 DLDEVILVG-GSTRIPAVQELVKKMT---GREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 402 ~i~~VvLvG-Gssrip~v~~~l~~~f---g~~~~~~~np~eaVA~GAa~~aa 449 (714)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999888 56788899999999999999875
No 60
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.78 E-value=0.00034 Score=75.96 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=105.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCcC-----eEEEEecCCCCHHHHHHHHH-HHHHcCCCeeEEechhHHHHHHcc
Q 005099 181 GKQFAAEEISAQVLRKLVDDASKFLNDSVT-----KAVVTVPAYFNDSQRTATKD-AGRIAGLDVLRIINEPTAASLAYG 254 (714)
Q Consensus 181 ~~~~~~eev~a~~L~~l~~~a~~~~~~~v~-----~~VITVPa~f~~~qR~~l~~-Aa~~AGl~~~~li~Ep~AAAlay~ 254 (714)
...++..++++++-+-+.-..++.+..+.+ .+|+-||-.|.....+.+.. .....||.-..++-|+.||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345677888777665555555556665544 68999999999877665544 466789999999999999998887
Q ss_pred cccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc-cccccCCCchhcHHHHHHHHH
Q 005099 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN-FKRDEGIDLLKDKQALQRLTE 333 (714)
Q Consensus 255 ~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~rL~~ 333 (714)
+. .-.|||+|+-+|.|+.++ +|+. +..+.-....||+||++.|+-++... |. ....++.. +-. +.
T Consensus 274 ls-----s~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~rs~FP-y~d~~v~~-~~d----~l 339 (618)
T KOG0797|consen 274 LS-----SACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLRRSGFP-YQDCDVLA-PID----WL 339 (618)
T ss_pred cc-----ceeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHHhcCCC-cccccccc-ccc----HH
Confidence 75 458999999999888776 3321 22223336789999999998877652 21 11122222 111 33
Q ss_pred HHHHhhhhcCCCceee
Q 005099 334 TAEKAKMELSSLTQTN 349 (714)
Q Consensus 334 ~~e~aK~~Ls~~~~~~ 349 (714)
-++++|+.++.-....
T Consensus 340 Ll~~LKe~Fc~l~~a~ 355 (618)
T KOG0797|consen 340 LLNQLKEKFCHLRAAE 355 (618)
T ss_pred HHHHHHHHhccccHhh
Confidence 4678888888665443
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.67 E-value=0.00045 Score=70.03 Aligned_cols=194 Identities=20% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHh
Q 005099 232 GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 311 (714)
Q Consensus 232 a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~ 311 (714)
-+..|.++..-=-|+.+|.+........+..+.++|+|||++|.+++.-++. +.-+.-+| .|+-++..|...
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTmlI~sE--- 176 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTMLINSE--- 176 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHHH---
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHHHHHHh---
Confidence 3456888888888999999999888777788999999999999999986554 32222222 345445444322
Q ss_pred ccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeec-------ccccc----C---------CCCCceeEEEecH
Q 005099 312 NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISL-------PFITA----T---------ADGPKHIDTTLTR 371 (714)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i-------~~~~~----~---------~~g~~~~~~~itr 371 (714)
.+++- +.-||.+|+---..-+..+.+ .++.. . .++...+...++-
T Consensus 177 -----LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~l 241 (332)
T PF08841_consen 177 -----LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSL 241 (332)
T ss_dssp -----CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-H
T ss_pred -----hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccH
Confidence 23211 456777776421111110100 00000 0 0111112222233
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHcC--CCCCCCCEEEEEcCCCCchhHHHHHHhhcCC--------CCCcCCCChhHH
Q 005099 372 VKFEELCSDLLDRL-KTPVETSLRDAK--LSFKDLDEVILVGGSTRIPAVQELVKKMTGR--------EPNVTVNPDEVV 440 (714)
Q Consensus 372 ~efe~l~~~l~~~i-~~~i~~~L~~a~--~~~~~i~~VvLvGGssrip~v~~~l~~~fg~--------~~~~~~np~eaV 440 (714)
+++..+=...=+++ ..-..++|++.. -...+|+.|+|||||+.=.-|-+++.+.+.. ++.-..-|..||
T Consensus 242 Ekir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAV 321 (332)
T PF08841_consen 242 EKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAV 321 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHH
Confidence 34433322222221 112233444321 2346789999999999988888888888732 344456799999
Q ss_pred HhHHHHHH
Q 005099 441 ALGAAVQA 448 (714)
Q Consensus 441 A~GAa~~a 448 (714)
|.|.++.-
T Consensus 322 ATGLvlsy 329 (332)
T PF08841_consen 322 ATGLVLSY 329 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998653
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.48 E-value=0.021 Score=64.13 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=57.9
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC-------------
Q 005099 365 IDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN------------- 431 (714)
Q Consensus 365 ~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~------------- 431 (714)
+.+.|.-.++++.+-.-=-.+...+..+.+..+ -.+.|.++|+|--+|+|.||..++.....++.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn--~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~W 820 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAIN--HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTW 820 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHh--hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccce
Confidence 335566666665443220023333333333322 24567899999999999999999887654332
Q ss_pred -------cCCCChhHHHhHHHHHHhHhhCCCCCcE
Q 005099 432 -------VTVNPDEVVALGAAVQAGVLAGDVSDIV 459 (714)
Q Consensus 432 -------~~~np~eaVA~GAa~~aa~ls~~~~~~~ 459 (714)
+..||...+|.||-+.+..+.-....+.
T Consensus 821 YPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 821 YPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred ecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 2348999999999887766554444443
No 63
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.08 E-value=0.007 Score=66.69 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=53.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEe---chhHHHHHHcc---cccCCCceEEEEEeCCcceEEEEEEEcCce
Q 005099 211 KAVVTVPAYFNDSQRTATKDAGRIAGLDVLRII---NEPTAASLAYG---FEKKNNETILVFDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 211 ~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li---~Ep~AAAlay~---~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~ 284 (714)
-++||==+--.+..|..+...+..||==|+.-. -|+.-|+-..+ +..+....|+=+|+||||+.+++++-++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 356666666667777777777777773332211 24444433222 2233468899999999999999988542
Q ss_pred EEEEEecCCCCCChhH
Q 005099 285 FEVLSTSGDTHLGGDD 300 (714)
Q Consensus 285 ~~vl~~~gd~~lGG~d 300 (714)
++++ ++.++||+-
T Consensus 165 --v~~T-~cl~IGGRL 177 (473)
T PF06277_consen 165 --VIDT-ACLDIGGRL 177 (473)
T ss_pred --EEEE-EEEeeccEE
Confidence 3343 347899974
No 64
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.04 E-value=0.28 Score=51.28 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-----CCCCCcCCCChhHHHhHHHHHH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-----GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-----g~~~~~~~np~eaVA~GAa~~a 448 (714)
++++...+.+.+.+..++.+....... |+|+||......+++.+++.+ ..++.....|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 445555556666666666665433222 999999999977777775555 2345567889999999999986
No 65
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.61 E-value=0.0026 Score=63.15 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAKLS-FKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~~~-~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++.+.+.+++.+.|+.++....+ .++.|+|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 44555666666655555555543111 244889999999999999999999999988766555 89999999999874
No 66
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.51 E-value=0.065 Score=53.89 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=116.0
Q ss_pred cCeEEEEecCCCCHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEE
Q 005099 209 VTKAVVTVPAYFNDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEV 287 (714)
Q Consensus 209 v~~~VITVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~v 287 (714)
-.++.+|-|.--....|+.|-+. .+..||.-+.+.-...-+.++-++- +=+|+|-|.|-+-+.=+. .+ +..
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-----tGvVvDSGDGVTHi~PVy--e~-~~l 172 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-----TGVVVDSGDGVTHIVPVY--EG-FVL 172 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-----ceEEEecCCCeeEEeeee--cc-eeh
Confidence 34789999999888889988775 5667888776655555444444443 338999999988765332 11 111
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhc-cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc-----------eeeeecccc
Q 005099 288 LSTSGDTHLGGDDFDKRIVDWLASN-FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT-----------QTNISLPFI 355 (714)
Q Consensus 288 l~~~gd~~lGG~d~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~-----------~~~i~i~~~ 355 (714)
-.-.+-..+.|+|+++-|.+++..+ |.-....| .+..+..|+.|+-.. ++++-++..
T Consensus 173 ~HLtrRldvAGRdiTryLi~LLl~rGYafN~tAD-----------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 173 PHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTAD-----------FETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred hhhhhhccccchhHHHHHHHHHHhhccccccccc-----------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 1113345789999999999988764 11111112 233445555554211 112211111
Q ss_pred ccCCCCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCEEEEEcCCCCchhHHHHHHhh
Q 005099 356 TATADGPKHIDTTLTRVKFE---ELCSDLL-----DRLKTPVETSLRDAKLSFK--DLDEVILVGGSTRIPAVQELVKKM 425 (714)
Q Consensus 356 ~~~~~g~~~~~~~itr~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~~~--~i~~VvLvGGssrip~v~~~l~~~ 425 (714)
. -. ..-.+.+-.+.|| .+++|-+ ..+.+++-++++.+.++.. --.+|+|.||++.-|.+.+.|.+.
T Consensus 242 t-LP---DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 242 T-LP---DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred e-cC---CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 1 00 1123455555554 4556543 2456777778887665422 126999999999999998887765
Q ss_pred c
Q 005099 426 T 426 (714)
Q Consensus 426 f 426 (714)
+
T Consensus 318 l 318 (389)
T KOG0677|consen 318 L 318 (389)
T ss_pred H
Confidence 4
No 67
>PRK15027 xylulokinase; Provisional
Probab=96.09 E-value=0.015 Score=66.42 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.-+++.+.-.++..++...-....++.|+++||+++++...+++.+.||.++....+.+++.|+|||+.|+.-.|.
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 3344444444444444333321111347899999999999999999999999999776677778999999999875543
No 68
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.96 E-value=0.57 Score=48.93 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=55.4
Q ss_pred CeEEEEecCCCCHHHHHHHHH-HHHHcCCCeeEEechhHHHHHHcc---cccCC-----CceEEEEEeCCcceEEEEEEE
Q 005099 210 TKAVVTVPAYFNDSQRTATKD-AGRIAGLDVLRIINEPTAASLAYG---FEKKN-----NETILVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~-Aa~~AGl~~~~li~Ep~AAAlay~---~~~~~-----~~~vLVvD~GgGT~Dvsv~~~ 280 (714)
..+|+|=|.+--++-.+.+.+ ..+.-+++- +..-+.|+.+++- .+..+ ....||+|-|-+-|-+.= +
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip--~ 169 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP--V 169 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh--h
Confidence 478999998755544444433 445556654 3444444444443 22222 458999999998765432 2
Q ss_pred cCceEEEEEecCCCCCChhHHHHHHHHHHH
Q 005099 281 GDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310 (714)
Q Consensus 281 ~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~ 310 (714)
-++.....+... ..+||..++..|.+++-
T Consensus 170 v~g~~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 VKGIPYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred hcCcchhhceEE-eecchHHHHHHHHHHhh
Confidence 222211112122 57999999999988764
No 69
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.86 E-value=0.026 Score=65.24 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 370 tr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
+|..+..++.-+++.+.-.++.+++...-....++.|.++||.++++...+.+.+.+|.++.+..++ ++.++|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHHHH
Confidence 5677778888888877766666665542112357899999999999999999999999988766555 578999999998
Q ss_pred HhhC
Q 005099 450 VLAG 453 (714)
Q Consensus 450 ~ls~ 453 (714)
.-.+
T Consensus 490 ~~~G 493 (541)
T TIGR01315 490 KAAG 493 (541)
T ss_pred HhcC
Confidence 7444
No 70
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.81 E-value=0.1 Score=58.28 Aligned_cols=218 Identities=20% Similarity=0.202 Sum_probs=119.7
Q ss_pred HHHHHHHHHcCCCe----eEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEc-------CceEEEEEecCCC
Q 005099 226 TATKDAGRIAGLDV----LRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVG-------DGVFEVLSTSGDT 294 (714)
Q Consensus 226 ~~l~~Aa~~AGl~~----~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~-------~~~~~vl~~~gd~ 294 (714)
..+.++|+..||.. ..-+-+.-|.++..+... .+-|++=+|-+|+++.+-+-. +.....+-...-.
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~ 308 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWL 308 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC---CCeEEEEeccceEEEEecCCceecCccccccccccCcchhh
Confidence 35667788888743 222223334333333221 334556578888887765532 1122222223334
Q ss_pred CCChhHHHHHHHHHHHhcccc---------ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCC---C
Q 005099 295 HLGGDDFDKRIVDWLASNFKR---------DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG---P 362 (714)
Q Consensus 295 ~lGG~d~D~~l~~~l~~~~~~---------~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g---~ 362 (714)
.-||..-.=.|++||.+...- +++.++. .....++..-+++.+...+-... .+-++.+.-+ .. +
T Consensus 309 ~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GN-RsP~aD 384 (544)
T COG1069 309 YEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGN-RSPLAD 384 (544)
T ss_pred hcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCC-cCCCCC
Confidence 557777777888888876421 1111111 11233444445555555432221 1112211110 00 0
Q ss_pred ce-------eEEEecHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc
Q 005099 363 KH-------IDTTLTRVKFEELCSDLLDRLKT---PVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV 432 (714)
Q Consensus 363 ~~-------~~~~itr~efe~l~~~l~~~i~~---~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~ 432 (714)
.+ +++.=+.+.+-.+..-.++-+.- .|-+++++.+ -.|+.|+.+||-.+.|.+.+.+.+..|+++..
T Consensus 385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i 461 (544)
T COG1069 385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVTGRPVVI 461 (544)
T ss_pred ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhcCCeEEe
Confidence 11 12222344444555555554433 3334444555 46899999999999999999999999988776
Q ss_pred CCCChhHHHhHHHHHHhHhhCC
Q 005099 433 TVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 433 ~~np~eaVA~GAa~~aa~ls~~ 454 (714)
. ..++++++|+|+.++.-.+.
T Consensus 462 ~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 462 P-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred e-cccchhhhHHHHHHHHHhcc
Confidence 6 77899999999999875543
No 71
>PLN02669 xylulokinase
Probab=95.71 E-value=0.031 Score=64.70 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
+++-+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||.++.+...+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555554432 457899999999999999999999999987665555 6889999999985
No 72
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.36 E-value=0.22 Score=52.08 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCCCEEEEEcC-CCCchhHHHHHHhhc---CCCCCcCCCChhHHHhHHHH
Q 005099 401 KDLDEVILVGG-STRIPAVQELVKKMT---GREPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 401 ~~i~~VvLvGG-ssrip~v~~~l~~~f---g~~~~~~~np~eaVA~GAa~ 446 (714)
..+..|+++|| .+..|.+++.+...+ +.+...+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 678999999998877 45677788999999999986
No 73
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.28 E-value=0.3 Score=54.26 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCC---c-CeEEEEecCCCCHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHccccc
Q 005099 183 QFAAEEISAQVLRKLVDDASKFLNDS---V-TKAVVTVPAYFNDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEK 257 (714)
Q Consensus 183 ~~~~eev~a~~L~~l~~~a~~~~~~~---v-~~~VITVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~ 257 (714)
.++--++...+|.|+..+ +|.. + ..+++|-+..=...+|+.|-+. .+.-|++-+.+=-+..=+.+. ....
T Consensus 90 VvtNwel~E~ilDY~F~~----LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h-N~~~ 164 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGK----LGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH-NYGK 164 (645)
T ss_pred ccccHHHHHHHHHHHHHh----cCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh-ccCc
Confidence 344556666666665543 3322 2 3578888777667788887665 455687765442222222211 1111
Q ss_pred CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 258 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 258 ~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
..+..-||+++|..+|-|-.+- +|.. ++....-.++||.....-|.+++..+|.
T Consensus 165 ~~~~~~liis~g~~~T~vipvl--dG~~-il~~~kRiN~GG~qa~dYL~~Lmq~Kyp 218 (645)
T KOG0681|consen 165 SSNKSGLIISMGHSATHVIPVL--DGRL-ILKDVKRINWGGYQAGDYLSRLMQLKYP 218 (645)
T ss_pred ccCcceEEEecCCCcceeEEEe--cCch-hhhcceeeccCcchHHHHHHHHHhccCc
Confidence 2245789999999998765544 3332 1222334789999988888888777654
No 74
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.27 E-value=0.043 Score=49.95 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=34.9
Q ss_pred EEEEEeCCcceEEEEEEEcC-ceEEEEEecCCCCCC--hhHHH--HHHHHHHHhccccccCCCchhcHHHHHHHHHHHHH
Q 005099 263 ILVFDLGGGTFDVSVLEVGD-GVFEVLSTSGDTHLG--GDDFD--KRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEK 337 (714)
Q Consensus 263 vLVvD~GgGT~Dvsv~~~~~-~~~~vl~~~gd~~lG--G~d~D--~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~ 337 (714)
++++|+|++++.+.+++... +.++++........| +.+|. +.+.+-+.. -.+++|+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~-------------------a~~~AE~ 61 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI-------------------AIEEAER 61 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT---------------------HHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH-------------------HHHHHHH
Confidence 68999999999999999843 445555432111111 66666 555544433 2556777
Q ss_pred h-hhhcC
Q 005099 338 A-KMELS 343 (714)
Q Consensus 338 a-K~~Ls 343 (714)
. |..+.
T Consensus 62 ~~k~~i~ 68 (120)
T PF14450_consen 62 LAKCEIG 68 (120)
T ss_dssp H-HHHH-
T ss_pred HhCCeee
Confidence 7 77654
No 75
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.18 E-value=0.056 Score=61.88 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
..++.-+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.... ..++.|+|||+.|+.-.|
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 34455555555544444444332 1112478999999999999999999999999886554 456889999999987544
No 76
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.17 E-value=0.059 Score=61.32 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+.++.-+++.+.-.++..++... .....++.|+++||.++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.+
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcC
Confidence 33444555544444444443321 1113478999999999999999999999999876554 666889999999987554
No 77
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.12 E-value=0.06 Score=61.73 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKL-SFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~-~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.-+++.+.-.++..++...- ....++.|.++||.++++.+.+++.+.||.++.... ..++.|+|||+.|+.-.|.
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 34455555555444444443211 012378999999999999999999999999886655 4457899999999875553
No 78
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.08 E-value=0.053 Score=62.00 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
.++.-+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.... ..++.|+|||+.|+.-.|
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~-~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPK-VTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecC-CCcchHHHHHHHHHhhcC
Confidence 3444555555444444444321 1123478999999999999999999999999886644 457889999999987544
No 79
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.03 E-value=0.06 Score=61.08 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
..++.-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.||.++.+..++ ++.++|||+.|+.-.+
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 34555556655544444443321 111247899999999999999999999999988666654 6789999999987544
No 80
>PRK04123 ribulokinase; Provisional
Probab=95.03 E-value=0.059 Score=62.50 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCC-CCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGS-TRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGs-srip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+++.-+++.+.-.+..+++...-....++.|+++||. ++.+.+.+++.+.||.++.+.. +.|+.|+|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhc
Confidence 3455555555544444444322112347899999999 9999999999999999885554 457889999999987444
No 81
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.96 E-value=0.068 Score=61.79 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCC-CCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGS-TRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGs-srip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
++.-+++.+.-.++..++...-....++.|+++||. ++.+.+.+++.+.||.++.+..++ ++.|+|||+.|+.-.+
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 444445444433333333321112357899999999 999999999999999988776665 6889999999987554
No 82
>PRK10331 L-fuculokinase; Provisional
Probab=94.87 E-value=0.072 Score=60.50 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+++.-+++.+.-.++..++... .....++.|.++||.++.+...+.+.+.||.++..... .++.++|||+.|+.-.+
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 3455555555544444444332 11235789999999999999999999999998866554 46889999999987544
No 83
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.82 E-value=0.56 Score=53.61 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCeeEEechhHHHHHHc-cccc--CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhH
Q 005099 224 QRTATKDAGRIAGLDVLRIINEPTAASLAY-GFEK--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 300 (714)
Q Consensus 224 qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay-~~~~--~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d 300 (714)
....+.++-+..|+++ ++|+..+=|-+.| +... ......+|+|+|||++.+++++-. .+.- .....+|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~--~~~~---~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA--QATS---LFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC--ceee---eeEEeccchH
Confidence 3445566667779998 6666666665555 2221 123468999999999999987633 2211 2236788877
Q ss_pred HHHHH
Q 005099 301 FDKRI 305 (714)
Q Consensus 301 ~D~~l 305 (714)
+.+.+
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 66555
No 84
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.69 E-value=0.065 Score=52.82 Aligned_cols=30 Identities=33% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCeeEEechhHHHHHH
Q 005099 223 SQRTATKDAGRIAGLDVLRIINEPTAASLA 252 (714)
Q Consensus 223 ~qR~~l~~Aa~~AGl~~~~li~Ep~AAAla 252 (714)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788899999999999999999998754
No 85
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.67 E-value=0.083 Score=60.62 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+.++.-+++.+.-.+...+.... .....++.|.++||.++.+...+++.+.||.++.+..++ ++.++|||+.|+.-.+
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 34455555555444443332210 011358899999999999999999999999988766655 5889999999987544
No 86
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.64 E-value=2.6 Score=46.69 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=42.0
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHH
Q 005099 365 IDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVK 423 (714)
Q Consensus 365 ~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~ 423 (714)
-.+.||..+++++. ----.+..-++-.|++++++.+||+.|+|.||+.+.--+++.+.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 35889999998753 22335667788899999999999999999999999888887775
No 87
>PLN02295 glycerol kinase
Probab=94.55 E-value=0.09 Score=60.42 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----C--CCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAK----L--SFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~----~--~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~ 447 (714)
-.+++.-+++.+.-.++..++... . ....++.|.++||+++++...+++.+.||.++.... ..|+.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHH
Confidence 334455555555555544444322 1 123578899999999999999999999999985544 457889999999
Q ss_pred HhHhhC
Q 005099 448 AGVLAG 453 (714)
Q Consensus 448 aa~ls~ 453 (714)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 987554
No 88
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.53 E-value=0.09 Score=59.46 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 378 CSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
+.-+++.+.-.++..++... .....++.|.++||+++.+...+.+.+.+|.++... +.++.|+|||+.|+.-.+.
T Consensus 362 ~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 362 ARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 44444444433333333321 111247899999999999999999999999998543 3678999999999875554
No 89
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.52 E-value=0.12 Score=57.95 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSF-KDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~-~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.+..-.++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 387 hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 387 HLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 3333444444444444444332222 56888999999999999999999999999999988888 999999999987765
No 90
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.20 E-value=0.22 Score=52.01 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=47.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCeeEE---echhHHHHHHccc---ccCCCceEEEEEeCCcceEEEEEEEcCce
Q 005099 211 KAVVTVPAYFNDSQRTATKDAGRIAGLDVLRI---INEPTAASLAYGF---EKKNNETILVFDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 211 ~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~l---i~Ep~AAAlay~~---~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~ 284 (714)
-++||=-..-....|..+......||==++.- --|+.-|.-..+- ..+....++=+|+||||+..|++...+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 35566555555666666655555555322211 1233333322221 223367899999999999999987543
Q ss_pred EEEEEecCCCCCChhH
Q 005099 285 FEVLSTSGDTHLGGDD 300 (714)
Q Consensus 285 ~~vl~~~gd~~lGG~d 300 (714)
++. ..+..+||+-
T Consensus 167 --v~d-TaCLdiGGRL 179 (473)
T COG4819 167 --VSD-TACLDIGGRL 179 (473)
T ss_pred --ccc-ceeeecCcEE
Confidence 222 2346778863
No 91
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.19 E-value=0.13 Score=59.33 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
.++.-+++.+.-.+...++... .....++.|.++||.++.+...+++.+.||.++....++ ++.++|||+.|+.-.|
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 3445555555444333333221 111247899999999999999999999999998766655 5789999999987544
No 92
>PRK10854 exopolyphosphatase; Provisional
Probab=94.11 E-value=0.86 Score=52.35 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCeeEEechhHHHHHHc-cccc--CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHH
Q 005099 225 RTATKDAGRIAGLDVLRIINEPTAASLAY-GFEK--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301 (714)
Q Consensus 225 R~~l~~Aa~~AGl~~~~li~Ep~AAAlay-~~~~--~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~ 301 (714)
...+.++-+..|+++ ++|+..+=|.+.| +... ......+|+|+|||++.+++++-....+ ..+ ..+|.-.+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~S---~~lG~vrl 172 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VES---RRMGCVSF 172 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eEE---EecceeeH
Confidence 344555666679998 6777666666655 3221 1235689999999999999987432221 111 36777766
Q ss_pred HHHH
Q 005099 302 DKRI 305 (714)
Q Consensus 302 D~~l 305 (714)
.+.+
T Consensus 173 ~e~f 176 (513)
T PRK10854 173 AQLY 176 (513)
T ss_pred Hhhh
Confidence 6554
No 93
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=93.94 E-value=4.6 Score=43.09 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=30.7
Q ss_pred HcCCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
..|++ +.+.|+..|+|++-... ....++++++.+|.|- -.+++.
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 34776 47999999999875443 2235789999999875 555553
No 94
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=93.85 E-value=0.15 Score=57.87 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 377 LCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
++.-+++.+.-.++..++... .....++.|.++||+++.+...+++.+.+|.++.... .++.++|||+.|+.-.+.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 344444444444444433321 1112478999999999999999999999999885543 479999999999875553
No 95
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.81 E-value=1.3 Score=50.83 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 401 KDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 401 ~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..++.|.++||+++.+...+++.+.||.++..+...+.+.+-||++.+..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 45679999999999999999999999998875555555555555555443
No 96
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.20 E-value=0.25 Score=53.78 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=47.5
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..+....+...|++|||.|+...|-+.|.+.|+.++... +..+++|+|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 345666678899999999999999999999999887655 7888999999999874
No 97
>PRK13321 pantothenate kinase; Reviewed
Probab=93.15 E-value=5.3 Score=41.45 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.8
Q ss_pred eEEEEEcCccceEEEEEECC
Q 005099 77 KVVGIDLGTTNSAVAAMEGG 96 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g 96 (714)
++++||+|.|++++|++.++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred CEEEEEECCCeEEEEEEECC
Confidence 37899999999999999865
No 98
>PRK14878 UGMP family protein; Provisional
Probab=92.90 E-value=7.1 Score=42.00 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHh
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVAL 442 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~ 442 (714)
.++.|+|+||-+...++++.|.+.+ +.++..+. -.|.++++
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3678999999999999999999877 44443332 23555555
No 99
>PRK09604 UGMP family protein; Validated
Probab=92.87 E-value=5.6 Score=43.00 Aligned_cols=209 Identities=16% Similarity=0.184 Sum_probs=102.8
Q ss_pred CcCeEEEEe-cCCCCHHHHHHHHHH---HHHcCCCeeEEechhHHHHHHcccccCC--CceEEEEEeCCcceEEEEEEEc
Q 005099 208 SVTKAVVTV-PAYFNDSQRTATKDA---GRIAGLDVLRIINEPTAASLAYGFEKKN--NETILVFDLGGGTFDVSVLEVG 281 (714)
Q Consensus 208 ~v~~~VITV-Pa~f~~~qR~~l~~A---a~~AGl~~~~li~Ep~AAAlay~~~~~~--~~~vLVvD~GgGT~Dvsv~~~~ 281 (714)
+++.+++|+ |..|+. -|-.+.-| +...++++ ..++--.|-|.+..+...- +--+|++|= |++. +++..+
T Consensus 72 did~iavt~GPG~~tg-lrvg~~~Ak~La~~~~ipl-~~v~h~~~ha~~a~~~s~~~~~~lvl~vsG--G~s~-~~~~~~ 146 (332)
T PRK09604 72 DIDAIAVTAGPGLVGA-LLVGVSFAKALALALNKPL-IGVNHLEGHLLAPFLEEEPEFPFLALLVSG--GHTQ-LVLVKG 146 (332)
T ss_pred HCCEEEEecCCCcHHh-HHHHHHHHHHHHHHhCCCE-EeecCHHHHHHhhhhccCCCCCEEEEEecC--CccE-EEEEcC
Confidence 467888888 777775 33333222 33335553 4455555544432222221 235667773 5544 333335
Q ss_pred CceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCC
Q 005099 282 DGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 361 (714)
Q Consensus 282 ~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g 361 (714)
.+.++++...-+..+| . +++.+...+. ......+ +++..|...+.. ...++..... .
T Consensus 147 ~~~~~~l~~t~d~slG-~-----~yd~~t~~LG----~~~~~g~----kvmgLA~~g~~~-------~~~~~~~~~~-~- 203 (332)
T PRK09604 147 IGDYELLGETLDDAAG-E-----AFDKVAKLLG----LGYPGGP----AIDKLAKQGDPD-------AFKFPRPMDR-P- 203 (332)
T ss_pred CCcEEEccccCCchhh-H-----HHHHHHHHcC----CCCCCcH----HHHHHHHhCCCC-------eEeCCccccC-C-
Confidence 6789998876665555 2 3333333332 2211111 344444333211 1111111100 0
Q ss_pred CceeEEE-e----cH------HHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 362 PKHIDTT-L----TR------VKFEELCSDL----LDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 362 ~~~~~~~-i----tr------~efe~l~~~l----~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
..++++. + .| ....+++..+ .+-+.+.++.+++. ..++.|+|.||.+...++++.|.+.+
T Consensus 204 ~~~~sfsg~~~~~~~~~~~~~~~~~~iA~s~q~~l~~~l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~ 278 (332)
T PRK09604 204 GLDFSFSGLKTAVLNTIEKSEQTKADIAASFQAAVVDVLVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELA 278 (332)
T ss_pred CccEecCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHH
Confidence 0112111 0 00 0012233222 22333444444443 35678999999999999999999987
Q ss_pred ---CCCCCcCC---CChhHHHhHHHHHHh
Q 005099 427 ---GREPNVTV---NPDEVVALGAAVQAG 449 (714)
Q Consensus 427 ---g~~~~~~~---np~eaVA~GAa~~aa 449 (714)
+.++..+. --|.++++|++=+-.
T Consensus 279 ~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 279 KKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred HHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 44443333 348899999884433
No 100
>PF13941 MutL: MutL protein
Probab=92.41 E-value=0.82 Score=51.10 Aligned_cols=43 Identities=33% Similarity=0.662 Sum_probs=32.5
Q ss_pred EEEEEcCccceEEEEEE--CCeeEEEeCCCCCccceEEEEEecCCCEEecHH
Q 005099 78 VVGIDLGTTNSAVAAME--GGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQI 127 (714)
Q Consensus 78 vIGID~GTt~s~va~~~--~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~ 127 (714)
++-+|||+|||++..++ .+..+++ |.-..||.| .+ +....|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--Cc-ccHHHHHH
Confidence 68899999999999998 7888887 445678877 23 35666643
No 101
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.51 E-value=1.1 Score=47.32 Aligned_cols=73 Identities=27% Similarity=0.433 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCeeEEechhHHHHHHcc-cc--cCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHH
Q 005099 227 ATKDAGRIAGLDVLRIINEPTAASLAYG-FE--KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 303 (714)
Q Consensus 227 ~l~~Aa~~AGl~~~~li~Ep~AAAlay~-~~--~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~ 303 (714)
.+...-+..|+++ .+|+..+=|.+.|. .. .......+|+|+|||++.+++++-..... ....++|.-.+.+
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~-----~~Sl~lG~vrl~e 149 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF-----SQSLPLGAVRLTE 149 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE-----EEEES--HHHHHH
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE-----eeeeehHHHHHHH
Confidence 3444555679988 56666655555442 11 12357899999999999999886432221 2225789887766
Q ss_pred HH
Q 005099 304 RI 305 (714)
Q Consensus 304 ~l 305 (714)
.+
T Consensus 150 ~~ 151 (285)
T PF02541_consen 150 RF 151 (285)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 102
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=90.51 E-value=0.84 Score=49.71 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCC----cCCCChhHHHhHHHHHH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPN----VTVNPDEVVALGAAVQA 448 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~----~~~np~eaVA~GAa~~a 448 (714)
-++++.-+.+=+...|.+.++... .+++.|+++||+++.|.+.+.|++.++. ++. ..++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 444555566656666666666644 2378999999999999999999999954 332 23445444444456666
Q ss_pred hH
Q 005099 449 GV 450 (714)
Q Consensus 449 a~ 450 (714)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 103
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.27 E-value=2.6 Score=45.93 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC----cCCCChhHHHhHHHHHHhH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN----VTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~----~~~np~eaVA~GAa~~aa~ 450 (714)
+++.-+.+=+...|.+.+.... ...+.|+++||+++.|.+.+.|++.++.++. ..++++.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3444444555555666665432 2346899999999999999999999863332 1245665555556677654
No 104
>PRK09698 D-allose kinase; Provisional
Probab=89.94 E-value=29 Score=36.69 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=28.3
Q ss_pred cCCCeeEEechhHHHHHHcccc-cCCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFE-KKNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~-~~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|+|++-... .....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEE
Confidence 4776 48999999998864332 223458888899876 444554
No 105
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=89.38 E-value=9.1 Score=40.81 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 384 RLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 384 ~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
-+.+.++++++. ..++.|+|.||.....++++.|.+.+
T Consensus 245 ~l~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 333444455544 34678999999999999999998887
No 106
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.09 E-value=0.13 Score=46.80 Aligned_cols=21 Identities=38% Similarity=0.639 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCee
Q 005099 78 VVGIDLGTTNSAVAAMEGGKP 98 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~ 98 (714)
|++||+|++.+++++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999988654
No 107
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.53 E-value=3 Score=43.68 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=45.4
Q ss_pred CCEEEEEcC--CCCch-hHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEe
Q 005099 403 LDEVILVGG--STRIP-AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLD 462 (714)
Q Consensus 403 i~~VvLvGG--ssrip-~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~d 462 (714)
...|+|.|- +.+.| .+++.|++.|..++.. +.. ++.|.|+|+.|.-+.+..++++=++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gGk~~iLGi~ 323 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSGKREILGID 323 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCCcceEeeee
Confidence 458999987 99999 9999999999754432 222 8999999999988887767655433
No 108
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=87.45 E-value=45 Score=35.82 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALG 443 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~G 443 (714)
.++.|+|.||.+...++.+.|.+.+ +.++..+. --|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3678999999999999999999865 33333222 237778887
No 109
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=87.36 E-value=2.4 Score=45.17 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCcCeE-EEEecCCCCHHHHHHHH-HHHHHcCCCeeEEechhHHHHHHccccc-C-CCceEE
Q 005099 189 ISAQVLRKLVDDASKFLNDSVTKA-VVTVPAYFNDSQRTATK-DAGRIAGLDVLRIINEPTAASLAYGFEK-K-NNETIL 264 (714)
Q Consensus 189 v~a~~L~~l~~~a~~~~~~~v~~~-VITVPa~f~~~qR~~l~-~Aa~~AGl~~~~li~Ep~AAAlay~~~~-~-~~~~vL 264 (714)
-+...|+..++.+..+ +. .++ +++--|.=....++.+. ..-+..|+++ ++|+..+=|.+.|.--. . .....+
T Consensus 53 ~~~~~l~~f~~~~~~~-~v--~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~ 128 (300)
T TIGR03706 53 RALEALKRFAELLRGF-PV--DEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGL 128 (300)
T ss_pred HHHHHHHHHHHHHHhC-CC--CeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcE
Confidence 3345566666666543 22 222 33333322323333444 4445679987 68887777777663211 1 122359
Q ss_pred EEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 265 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 265 VvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
++|+|||++.++.+.-.+ +. .....++|...+.+.+
T Consensus 129 v~DiGGGSte~~~~~~~~--~~---~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 129 VVDIGGGSTELILGKDFE--PG---EGVSLPLGCVRLTEQF 164 (300)
T ss_pred EEEecCCeEEEEEecCCC--Ee---EEEEEccceEEhHHhh
Confidence 999999999999876332 11 1223567776665554
No 110
>PRK09557 fructokinase; Reviewed
Probab=87.26 E-value=43 Score=35.39 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=28.6
Q ss_pred cCCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|+|++-... .+..++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 3776 57999999999886443 223567888888865 444554
No 111
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=86.22 E-value=71 Score=36.88 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhHHHHHHhHhhC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~GAa~~aa~ls~ 453 (714)
.++.|+|+||-....++++.|.+.+ +.++..+. -.|.++++|++.+....++
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 4678999999999999999999665 44443333 4578999998876554443
No 112
>PLN02666 5-oxoprolinase
Probab=85.87 E-value=9.5 Score=48.36 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=47.1
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCC-CCcCCCChhHHHhHHHH
Q 005099 369 LTRVKFEELCSDLL-DRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRE-PNVTVNPDEVVALGAAV 446 (714)
Q Consensus 369 itr~efe~l~~~l~-~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~-~~~~~np~eaVA~GAa~ 446 (714)
++-++..+-+..+. ....+.|+.+....++++.+ -.++..||.. |..--.|.+.+|.+ +..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444333333 34556666666666665543 2334445444 66677888899876 77888999999999986
No 113
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=85.85 E-value=1 Score=50.17 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCCC--CCCEEEEEcCCCCchhHHHHHHhhc-CC-------CCCcCCCChhHHHhHHHHHHhH
Q 005099 385 LKTPVETSLRDAKLSFK--DLDEVILVGGSTRIPAVQELVKKMT-GR-------EPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 385 i~~~i~~~L~~a~~~~~--~i~~VvLvGGssrip~v~~~l~~~f-g~-------~~~~~~np~eaVA~GAa~~aa~ 450 (714)
+.+++..+|...-.+.. .+..|+|+||+|.+|.+.+.|...+ +. .+....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 44555555555322212 2789999999999999999998776 32 3455679999999999999986
No 114
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=84.80 E-value=25 Score=41.62 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCc--hhHHH-HHHhhc
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRI--PAVQE-LVKKMT 426 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssri--p~v~~-~l~~~f 426 (714)
++...++.....+-..+...-....+.+.|+|-||-+.- +++.+ .+.+.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f 296 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARF 296 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHH
Confidence 344556666666655555543333346789999998733 55553 566666
No 115
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=79 Score=36.11 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=57.6
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHH-HHHHhhcCCCCCcCC-CChhHHHhHH
Q 005099 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ-ELVKKMTGREPNVTV-NPDEVVALGA 444 (714)
Q Consensus 367 ~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~-~~l~~~fg~~~~~~~-np~eaVA~GA 444 (714)
.+..-.++...++..++++...+-.-+.+... .+.+.+.||....-..- ++|.+-+..++.+.. -.|.-.|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 34445566666777777776666665555321 56899999998877777 777777766665544 4478899999
Q ss_pred HHHHhHhhC
Q 005099 445 AVQAGVLAG 453 (714)
Q Consensus 445 a~~aa~ls~ 453 (714)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999876443
No 116
>PRK12408 glucokinase; Provisional
Probab=84.52 E-value=64 Score=34.86 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=29.1
Q ss_pred HcCCCeeEEechhHHHHHHcccc----------c-CCC-ceEEEEEeCCcceEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE----------K-KNN-ETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~----------~-~~~-~~vLVvD~GgGT~Dvsv~ 278 (714)
..|++.+.++|+-.|+|++-... . +.. ..++++=+|.| +=.+++
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTG-iGggiv 162 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTG-LGAALW 162 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCc-ceEEEE
Confidence 45787689999999999975332 1 111 46777777765 444555
No 117
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=84.36 E-value=4.7 Score=41.09 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcce
Q 005099 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 273 (714)
Q Consensus 194 L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~ 273 (714)
.+++++.+++.++.++ .|+++-..|... +++++--..|--+ ..|.-.+.. ....+.++++|+|..|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaN--------W~Ata~~~~-e~~~dsci~VD~GSTTt 142 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAAN--------WVATARFLA-EEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHHHhh--------hHHHHHHHH-HhcCCceEEEecCCccc
Confidence 4567777787777776 889999988765 3332211111000 111111111 11256789999999999
Q ss_pred EEEEEE
Q 005099 274 DVSVLE 279 (714)
Q Consensus 274 Dvsv~~ 279 (714)
|+-=+.
T Consensus 143 DIIPi~ 148 (330)
T COG1548 143 DIIPIK 148 (330)
T ss_pred ceEeec
Confidence 986544
No 118
>PRK00976 hypothetical protein; Provisional
Probab=84.18 E-value=7 Score=41.74 Aligned_cols=58 Identities=28% Similarity=0.354 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCCCch--hHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEE
Q 005099 402 DLDEVILVGGSTRIP--AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLL 461 (714)
Q Consensus 402 ~i~~VvLvGGssrip--~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~ 461 (714)
+++.|+|-||-++.+ .+.+.+++.+... ...-..++.++|||+.|..+.+..++++=.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~ilgi 322 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDILGI 322 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceeeee
Confidence 478899999999998 8888898888543 233345899999999998877666665433
No 119
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=83.33 E-value=3.7 Score=44.65 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCeEEEEEcCccceEEEEEEC-----CeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEG-----GKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGR 149 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~-----g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~ 149 (714)
..++|-||=|+|-|+|-+|+= +.+-.+..+-=....|=.=+| ..+|.....+++.||..
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsf----------------addp~~aA~Sl~~LLd~ 129 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSF----------------ADDPEEAANSLRPLLDV 129 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCccccc----------------CCChHHHHHhHHHHHHH
Confidence 568999999999999998842 111111110001111222223 23455555566777744
Q ss_pred CchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHH
Q 005099 150 KMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATK 229 (714)
Q Consensus 150 ~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~ 229 (714)
....+ |....+ .-.+.+.-. .+-++.|.+-+..+|+.++++.+....-++..-.|+|=.
T Consensus 130 A~~~v-------P~~~~~--kTPi~lkAT-AGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~----------- 188 (453)
T KOG1385|consen 130 AEAFV-------PREHWK--KTPIVLKAT-AGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD----------- 188 (453)
T ss_pred HHhhC-------CHhHhc--cCceEEEee-cccccCChhHHHHHHHHHHHHHhccCCccccCCceeecc-----------
Confidence 33322 221110 111222221 366788999999999999998874333222211122211
Q ss_pred HHHHHcCCCeeEEechhHHH--HHHccccc---CCCceEEEEEeCCcceEEEEEE
Q 005099 230 DAGRIAGLDVLRIINEPTAA--SLAYGFEK---KNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 230 ~Aa~~AGl~~~~li~Ep~AA--Alay~~~~---~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
| .+|-.-| .+.|.... ....++.|+|+|||+|.++..-
T Consensus 189 ------G------tdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 189 ------G------TDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ------C------cccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 1 1111111 12333321 1157899999999999999875
No 120
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=83.21 E-value=14 Score=39.73 Aligned_cols=71 Identities=27% Similarity=0.342 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCC---CcCCCC----hhHHHhHHHHHHhHhh
Q 005099 380 DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREP---NVTVNP----DEVVALGAAVQAGVLA 452 (714)
Q Consensus 380 ~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~---~~~~np----~eaVA~GAa~~aa~ls 452 (714)
.+++.+.+.|...+.. ..+++.|+|.|-.+++|-+.+.+++.|+.-. ...+.+ -...|.|||+.|.-+.
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhh
Confidence 3344444444433333 3467899999999999999988888774311 112222 2448999999998776
Q ss_pred CC
Q 005099 453 GD 454 (714)
Q Consensus 453 ~~ 454 (714)
+.
T Consensus 318 GG 319 (343)
T PF07318_consen 318 GG 319 (343)
T ss_pred cc
Confidence 65
No 121
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=82.80 E-value=0.76 Score=48.67 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=26.1
Q ss_pred CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEE
Q 005099 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
++..+.+-|.|.+...........+++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAARLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH--HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhhhcCCCCCEEEEeCCCCEEEEEEEE
Confidence 455567777776655444222356899999999999999986
No 122
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=81.85 E-value=9.5 Score=43.37 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcCeEE-EEecCCC-CHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccc--cCCCceE
Q 005099 188 EISAQVLRKLVDDASKFLNDSVTKAV-VTVPAYF-NDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE--KKNNETI 263 (714)
Q Consensus 188 ev~a~~L~~l~~~a~~~~~~~v~~~V-ITVPa~f-~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~--~~~~~~v 263 (714)
+.+...+..|+..++...+..+.++. |+.-|.= -...-+.+..+-+..|+++--|=-|-+|--.+++.- .......
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~ 131 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDG 131 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCE
Confidence 34444555555555444444555522 2111111 123344577788888999844444444433333322 1115789
Q ss_pred EEEEeCCcceEEEEEEE
Q 005099 264 LVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 264 LVvD~GgGT~Dvsv~~~ 280 (714)
+|+|+|||+|.+++..-
T Consensus 132 lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 132 LVIDIGGGSTELVLGDN 148 (492)
T ss_pred EEEEecCCeEEEEEecC
Confidence 99999999999999873
No 123
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=80.32 E-value=17 Score=40.06 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCeEEEEEcCccceEEEEEE---CCeeEE
Q 005099 75 NEKVVGIDLGTTNSAVAAME---GGKPTI 100 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~---~g~~~i 100 (714)
.+.++.||||.||.++|.+. +|+.++
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 67899999999999999874 344444
No 124
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=79.95 E-value=78 Score=32.70 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCc
Q 005099 371 RVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRI 415 (714)
Q Consensus 371 r~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssri 415 (714)
++..+.+...++-.....|+..+++.+.....-..++++||.+++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh
Confidence 455667777777777777777777654322234689999998654
No 125
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.88 E-value=23 Score=38.27 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=93.1
Q ss_pred HHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCch--hcHHH
Q 005099 250 SLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLL--KDKQA 327 (714)
Q Consensus 250 Alay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~--~~~~~ 327 (714)
|+...+....+...+|+++||= ..+|.+.-.. .|+ ..|.--|-.-+|..+.++.-+.|.+.-..-.. -+...
T Consensus 152 A~H~Al~~~~~~~r~vlNiGGI-aNlt~l~~~~---~v~--g~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~l 225 (371)
T COG2377 152 AFHAALARAPRERRAVLNIGGI-ANLTYLPPGG---PVL--GFDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEAL 225 (371)
T ss_pred hhhhHhhcCCCCCeEEEeccce-EEEEecCCCC---cee--eeecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHH
Confidence 3333333344688999999883 4555554333 344 44556677788999988887666543211111 12222
Q ss_pred HHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHH---HHHHHHHHHH-HHH-HHHHHHcCCCCCC
Q 005099 328 LQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE---LCSDLLDRLK-TPV-ETSLRDAKLSFKD 402 (714)
Q Consensus 328 ~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~---l~~~l~~~i~-~~i-~~~L~~a~~~~~~ 402 (714)
..+|+ .+.-|+... |... |-..|....-.+.++. +-...+.++. ++. ..+++....-..+
T Consensus 226 l~~ll-----~~p~F~~~~------PkSt----gRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~eltA~tIv~s~~~~~~~ 290 (371)
T COG2377 226 LARLL-----AHPYFALPA------PKST----GRELFNLQWLEQHLDDTQLLNAEDVQATLVELTAATIVKSVATLQGD 290 (371)
T ss_pred HHHHh-----hCCcccCCC------cccC----CccccchhhHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 22222 122222111 0000 1122222222222222 1111122111 111 1122222233467
Q ss_pred CCEEEEEcCCCCchhHHHHHHhhc-CCCCC----cCCCChhHHHhHHHHHHhHh
Q 005099 403 LDEVILVGGSTRIPAVQELVKKMT-GREPN----VTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 403 i~~VvLvGGssrip~v~~~l~~~f-g~~~~----~~~np~eaVA~GAa~~aa~l 451 (714)
.+..+++||+.+.|.+.+.|...+ |..+. ..++++..=|.+-|+.|...
T Consensus 291 p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 291 PRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred CceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 789999999999999999999999 54443 25678877777778777653
No 126
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=78.37 E-value=6.9 Score=43.54 Aligned_cols=86 Identities=23% Similarity=0.246 Sum_probs=59.8
Q ss_pred EEecHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHH
Q 005099 367 TTLTRV-KFEELCSDLLDRLKTPVETSLRDAKLSF-KDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGA 444 (714)
Q Consensus 367 ~~itr~-efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GA 444 (714)
+-|||. .-+.+++-.++.+.-...++++...-+. ..+..+-+=||.++..++.+...+.+|.++.++.+ .|+-|+||
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGa 443 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGA 443 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHH
Confidence 344443 2334555666666555555555422111 25788999999999999999999999988776654 46789999
Q ss_pred HHHHhHhhC
Q 005099 445 AVQAGVLAG 453 (714)
Q Consensus 445 a~~aa~ls~ 453 (714)
|+.|..-.+
T Consensus 444 A~lAGla~G 452 (499)
T COG0554 444 AYLAGLAVG 452 (499)
T ss_pred HHHHhhhhC
Confidence 999987555
No 127
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=78.16 E-value=24 Score=38.59 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=56.0
Q ss_pred EEecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCE-EEEEcCCCCchhHHHHHHhhcCC-CCCc-CCCChhHHHh
Q 005099 367 TTLTRVKFEELCSDLLDRL-KTPVETSLRDAKLSFKDLDE-VILVGGSTRIPAVQELVKKMTGR-EPNV-TVNPDEVVAL 442 (714)
Q Consensus 367 ~~itr~efe~l~~~l~~~i-~~~i~~~L~~a~~~~~~i~~-VvLvGGssrip~v~~~l~~~fg~-~~~~-~~np~eaVA~ 442 (714)
..-.+.++-..++..++++ ...++.++++.+ ++. ++|.||....-..-..|.+..+. ++.+ +.-.|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456677777777777655 456667777765 345 99999999988888888887543 3433 3445899999
Q ss_pred HHHHHHhHhhC
Q 005099 443 GAAVQAGVLAG 453 (714)
Q Consensus 443 GAa~~aa~ls~ 453 (714)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999886443
No 128
>PTZ00107 hexokinase; Provisional
Probab=77.89 E-value=1.3e+02 Score=34.11 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=38.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCC--CeeEEechhHHHHHHcccccC--CCceEEEEEeCCcce
Q 005099 217 PAYFNDSQRTATKDAGRIAGL--DVLRIINEPTAASLAYGFEKK--NNETILVFDLGGGTF 273 (714)
Q Consensus 217 Pa~f~~~qR~~l~~Aa~~AGl--~~~~li~Ep~AAAlay~~~~~--~~~~vLVvD~GgGT~ 273 (714)
|..-...-.+.+.+|...-|+ +++.++|+.+|.-++..+... .+...+=+=+|-||=
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~N 249 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSN 249 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEecccc
Confidence 445555667788888888776 568899999998887666541 133444444677764
No 129
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=72.15 E-value=33 Score=35.37 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=58.8
Q ss_pred CCCcCeEEE--EecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccC--CCceEEEEEeCCcceEEEEEEEc
Q 005099 206 NDSVTKAVV--TVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKK--NNETILVFDLGGGTFDVSVLEVG 281 (714)
Q Consensus 206 ~~~v~~~VI--TVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vLVvD~GgGT~Dvsv~~~~ 281 (714)
+..+..++. .+|.+|+.. +++++.+.-.|.+. .+.+--.||.+....+.. ....++++|+|-|.|-..++ .
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v--~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV--K 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE--e
Confidence 445567777 899997643 35556655556555 444555555554544432 26789999999998877776 3
Q ss_pred CceEEEEEecCCCCCChhHHHHHHHHHH
Q 005099 282 DGVFEVLSTSGDTHLGGDDFDKRIVDWL 309 (714)
Q Consensus 282 ~~~~~vl~~~gd~~lGG~d~D~~l~~~l 309 (714)
++.+.=+-......+-...+...|.++.
T Consensus 186 ~~rI~GvfEHHT~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 186 DGRIYGVFEHHTGMLTPEKLEEYLERLR 213 (254)
T ss_pred CCEEEEEEecccCCCCHHHHHHHHHHHH
Confidence 4433333333335566665555544443
No 130
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=72.00 E-value=4.1 Score=41.76 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.1
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
+++|||+|||++++++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 4899999999999999874
No 131
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.17 E-value=4.5 Score=47.74 Aligned_cols=41 Identities=29% Similarity=0.519 Sum_probs=29.4
Q ss_pred CeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEEE
Q 005099 238 DVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
++..|.+-|.|-.+...+. ...+ +++++||||.|||++++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CeeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 3445677887765554333 2223 699999999999999987
No 132
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=70.88 E-value=18 Score=42.97 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=21.2
Q ss_pred HHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005099 603 DTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKD 643 (714)
Q Consensus 603 ~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 643 (714)
+.+++++..+.+.+++|++. .....+.+++.++++++
T Consensus 567 ee~~~l~~~l~~~~~wL~~~----~~~~~~~~~~kl~eL~~ 603 (653)
T PTZ00009 567 SDKATIEKAIDEALEWLEKN----QLAEKEEFEHKQKEVES 603 (653)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHH
Confidence 44566667777777777631 22344555666655554
No 133
>PRK03011 butyrate kinase; Provisional
Probab=70.37 E-value=16 Score=39.81 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCC----CCCcCCCChhHHHhHHHHH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGR----EPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~----~~~~~~np~eaVA~GAa~~ 447 (714)
++|.|+|.||.+..+.+.+.|++.+.. .+....+-.++.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 689999999999999999998887742 3334446678999998754
No 134
>PLN02920 pantothenate kinase 1
Probab=69.01 E-value=26 Score=38.42 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=36.4
Q ss_pred CCCCEEEEEcCCCCch-hHHHHHHhh---c---CCCCCcCCCChhHHHhHHHHHHh
Q 005099 401 KDLDEVILVGGSTRIP-AVQELVKKM---T---GREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 401 ~~i~~VvLvGGssrip-~v~~~l~~~---f---g~~~~~~~np~eaVA~GAa~~aa 449 (714)
.+++.|+++|...|.+ ..++.|.-. . ..+.....+....-|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 5689999999999998 666644433 2 23456667888999999987643
No 135
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=98 Score=28.04 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 005099 599 RDAIDTKNQADSVVYQTEKQLKELG-------------DKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVM 665 (714)
Q Consensus 599 ~~~~~~~n~lE~~i~~~~~~l~~~~-------------~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~ 665 (714)
...+..|-.+|.-+.++...|+++. +.+-...++++.+.|++-.+.|+-. ...++...+.++..++
T Consensus 23 ~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r-i~tLekQe~~l~e~l~ 101 (119)
T COG1382 23 QKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR-IKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3344455556666666666665421 1122335555666665555555532 4556666666777777
Q ss_pred HHHHHHhcCCCC
Q 005099 666 QLGQSLYNQPGA 677 (714)
Q Consensus 666 ~i~~~~~~~~~~ 677 (714)
.+...++..-++
T Consensus 102 eLq~~i~~~l~~ 113 (119)
T COG1382 102 ELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHhhc
Confidence 777777764433
No 136
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=66.36 E-value=12 Score=44.73 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcC---CCCCcC---CCChhHHHhHHHHHHh
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTG---REPNVT---VNPDEVVALGAAVQAG 449 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg---~~~~~~---~np~eaVA~GAa~~aa 449 (714)
.++.|+|+||..+...+++.|.+.+. .++..+ .--|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 57789999999999999999998773 333322 2448999999998874
No 137
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=65.68 E-value=1e+02 Score=33.50 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 383 DRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 383 ~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
+-+.+.+.++++.. .++.|+++||-+...+||+.|++..
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33444445555442 4678999999999999999999987
No 138
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=64.35 E-value=6.2 Score=33.92 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=16.6
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|.|++.+|+...
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4899999999999998753
No 139
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=64.17 E-value=78 Score=33.58 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=25.7
Q ss_pred cCCCeeEEechhHHHHHHcccccC--CCceEEEEEeCCc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKK--NNETILVFDLGGG 271 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~--~~~~vLVvD~GgG 271 (714)
.|+++ .+-|+..|+|++-.+... ....++++-+|-|
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 35554 899999999998765532 3457777777766
No 140
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=60.55 E-value=9.1 Score=43.91 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.4
Q ss_pred CCeEEEEEcCccceEEEEEECC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGG 96 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g 96 (714)
+.+++|||+|||++++.+++.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 5689999999999999988654
No 141
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=59.98 E-value=8.4 Score=44.19 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.7
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 005099 76 EKVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~ 95 (714)
..++|||+|||++++++++.
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred cEEEEEecCCCceEEEEECC
Confidence 37999999999999999864
No 142
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.93 E-value=63 Score=33.33 Aligned_cols=90 Identities=17% Similarity=0.321 Sum_probs=56.5
Q ss_pred ecCCCCHHHHHHHHHHHHH---cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecC
Q 005099 216 VPAYFNDSQRTATKDAGRI---AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 292 (714)
Q Consensus 216 VPa~f~~~qR~~l~~Aa~~---AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~g 292 (714)
+|.+|+ .|+.|+.. ++-. ..+++.-.||+.....+... ...||+|+|-|.+..+++. .+.+.-+-...
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpaa-~palvVd~GngHttaalvd--edRI~gv~EHH 256 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPAA-DPALVVDYGNGHTTAALVD--EDRIVGVYEHH 256 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCccc-CceEEEEccCCceEEEEec--CCeEEEEeecc
Confidence 577775 44554433 3333 35566666666666665443 4899999999998877765 33554444455
Q ss_pred CCCCChhHHHHHHHHHHHhccc
Q 005099 293 DTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 293 d~~lGG~d~D~~l~~~l~~~~~ 314 (714)
...+.-+.|-..|.+++.-++.
T Consensus 257 T~~Lspekled~I~rf~~GeL~ 278 (342)
T COG4012 257 TIRLSPEKLEDQIIRFVEGELE 278 (342)
T ss_pred cccCCHHHHHHHHHHHHhcccc
Confidence 5677777777777776665554
No 143
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=59.23 E-value=9 Score=44.15 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.4
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~ 95 (714)
|..++|||+|||++++++++.
T Consensus 2 m~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred CcEEEEEecCCCceEEEEECC
Confidence 347999999999999999864
No 144
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=58.79 E-value=9.9 Score=35.33 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=18.1
Q ss_pred eEEEEEcCccceEEEEEECC
Q 005099 77 KVVGIDLGTTNSAVAAMEGG 96 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g 96 (714)
.++|||+|+..+.+|+..+.
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 68999999999999998765
No 145
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=58.53 E-value=26 Score=27.50 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.3
Q ss_pred HHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCe
Q 005099 201 ASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDV 239 (714)
Q Consensus 201 a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~ 239 (714)
.+.+...+ ...++.|+.++..+|..+.+.|+..||..
T Consensus 8 i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 8 LEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 34444443 67889999999999999999999999965
No 146
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=58.47 E-value=2.6e+02 Score=29.91 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhHHH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALGAA 445 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~GAa 445 (714)
.++.|+|.||.+...++++.|.+.+ +.++..+. --|.++++|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999887 44433332 34788888887
No 147
>PTZ00288 glucokinase 1; Provisional
Probab=57.34 E-value=68 Score=35.65 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.9
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~ 95 (714)
...++|+|.|.||+++++++.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 668999999999999999864
No 148
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=54.93 E-value=8.7 Score=41.07 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.1
Q ss_pred CceEEEEEeCCcceEEEEEEE
Q 005099 260 NETILVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~ 280 (714)
-.+++++||||.|+|++++.-
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCCEEEEEcCccceeeEEecC
Confidence 346999999999999999863
No 149
>PRK10331 L-fuculokinase; Provisional
Probab=53.20 E-value=13 Score=42.19 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=17.1
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|||+++++++..
T Consensus 3 ~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDR 21 (470)
T ss_pred eEEEEecCCCceEEEEEcC
Confidence 6899999999999999853
No 150
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=52.95 E-value=13 Score=42.20 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=17.1
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|||++++++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999864
No 151
>PRK04123 ribulokinase; Provisional
Probab=52.33 E-value=13 Score=43.00 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=17.5
Q ss_pred CeEEEEEcCccceEEEEEE
Q 005099 76 EKVVGIDLGTTNSAVAAME 94 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~ 94 (714)
..++|||+|||+++++++.
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4799999999999999987
No 152
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=51.31 E-value=19 Score=34.20 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=16.0
Q ss_pred eEEEEEcCccceEEEEEE
Q 005099 77 KVVGIDLGTTNSAVAAME 94 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~ 94 (714)
.|+|||.|++++..|+.+
T Consensus 1 rILGIDPGl~~~G~av~~ 18 (154)
T cd00529 1 RILGIDPGSRNTGYGVIE 18 (154)
T ss_pred CEEEEccCcCceEEEEEE
Confidence 389999999999999874
No 153
>PRK15027 xylulokinase; Provisional
Probab=50.01 E-value=13 Score=42.25 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.7
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 3799999999999999864
No 154
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=49.92 E-value=2.8 Score=40.03 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=20.6
Q ss_pred cccCCeEEEEEcCccceEEEEEECCe
Q 005099 72 RVVNEKVVGIDLGTTNSAVAAMEGGK 97 (714)
Q Consensus 72 ~~~~~~vIGID~GTt~s~va~~~~g~ 97 (714)
+..-+-+||+|+||+|++++..++.+
T Consensus 53 kp~~~d~~g~~~gt~n~~~~~~e~~k 78 (213)
T PLN00130 53 KPVVNDILGTGLGTNNAIREEREKSK 78 (213)
T ss_pred CCCccceeccCCCcchHHHHHHhccc
Confidence 33467899999999999998876543
No 155
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=49.77 E-value=47 Score=26.17 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCe
Q 005099 198 VDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDV 239 (714)
Q Consensus 198 ~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~ 239 (714)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444555433 467889999999999999999999999975
No 156
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=49.10 E-value=2.5e+02 Score=31.24 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCC-CchhHHHHHHhhc
Q 005099 379 SDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGST-RIPAVQELVKKMT 426 (714)
Q Consensus 379 ~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGss-rip~v~~~l~~~f 426 (714)
+-+..++.+.|-......+ ..+|.|+++||-. ..+.|++.+.+.+
T Consensus 307 ~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 307 KMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 3344555555555444432 2589999999999 9999999998876
No 157
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=48.42 E-value=2.1e+02 Score=30.08 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred HcCCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
..|++ +.+.|+-.|+|++-... .+..++++++.+|.| +-.+++.
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~ 140 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVF 140 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEE
Confidence 34776 47999999999875443 223568888889876 3444443
No 158
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=48.12 E-value=18 Score=33.72 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.1
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~ 95 (714)
++.++|||+|+..+.+|+.+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecC
Confidence 346999999999999998765
No 159
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=47.97 E-value=15 Score=42.04 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.7
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|||+++++++..
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999854
No 160
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=47.92 E-value=17 Score=41.97 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=16.9
Q ss_pred eEEEEEcCccceEEEEEE
Q 005099 77 KVVGIDLGTTNSAVAAME 94 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~ 94 (714)
.++|||+|||.++++++.
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999988
No 161
>PLN02362 hexokinase
Probab=47.92 E-value=45 Score=38.17 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCC--CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceE
Q 005099 225 RTATKDAGRIAGL--DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFD 274 (714)
Q Consensus 225 R~~l~~Aa~~AGl--~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~D 274 (714)
.+.+.+|...-|+ ++..|||+.++..++..+.. +...+=+=+|-||=-
T Consensus 208 v~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~--~~~~iG~IlGTGtNa 257 (509)
T PLN02362 208 AECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD--PDTVAAVIIGTGTNA 257 (509)
T ss_pred HHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC--CCceEEEEEECCccc
Confidence 3444455444454 67889999999887765543 234444457777643
No 162
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=47.78 E-value=3.9e+02 Score=28.75 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEe---chhHHHHHHcccccCC--CceEEEEEeCCcceEEEEEEEcCce
Q 005099 210 TKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRII---NEPTAASLAYGFEKKN--NETILVFDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li---~Ep~AAAlay~~~~~~--~~~vLVvD~GgGT~Dvsv~~~~~~~ 284 (714)
....+|-|.--.++.|+-+.+..-.. ++|..+. .--.|.|..|....-. .-+=+|+|-|-|-+-+-.+ ..+.
T Consensus 107 h~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipv--aEgy 183 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPV--AEGY 183 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEe--ecce
Confidence 35788999888888888877664332 4444332 1122222223221111 2344799999997755433 3333
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHh
Q 005099 285 FEVLSTSGDTHLGGDDFDKRIVDWLAS 311 (714)
Q Consensus 285 ~~vl~~~gd~~lGG~d~D~~l~~~l~~ 311 (714)
+ +.+.-....+.|+|++.-+...+.+
T Consensus 184 V-igScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 184 V-IGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred E-EeeeeccccccCCchhHHHHHHhhC
Confidence 2 3333445789999999877776644
No 163
>PRK00047 glpK glycerol kinase; Provisional
Probab=47.29 E-value=19 Score=41.27 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.6
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 005099 76 EKVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~ 95 (714)
..++|||+|||+++++++..
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 46999999999999999853
No 164
>PLN02295 glycerol kinase
Probab=46.20 E-value=17 Score=41.74 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.7
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|||++++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 3799999999999999853
No 165
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=46.11 E-value=33 Score=30.24 Aligned_cols=45 Identities=22% Similarity=0.508 Sum_probs=31.7
Q ss_pred eeEEEEEecCC-ceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHH
Q 005099 540 QIEVKFDIDAN-GILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERF 591 (714)
Q Consensus 540 ~i~v~f~id~~-gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~ 591 (714)
...+.|.+|.+ |.+.|++.|..||+.. ..++.+++-++.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVI-------RqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVI-------RQIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEE-------EEE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEE-------EeCCcHHHHHHHHHHHHH
Confidence 35689999885 8899999999999874 346788887777665543
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.01 E-value=2.1e+02 Score=33.35 Aligned_cols=88 Identities=14% Similarity=0.351 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH----hccCCC--HHHHHHHHHHHHHHHHHHhcCCHH
Q 005099 578 NDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE----LGDKVP--AEVKGKVEGKLKELKDAIAEGSTQ 651 (714)
Q Consensus 578 ~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~----~~~~~~--~~~~~~~~~~l~~~~~wl~~~~~~ 651 (714)
++++..+..++..+...+++.|..+ ..|......+|+.|.. |...++ ++....+....+++.+|...+|..
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr~~i---~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNREEI---EELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4567777777777766665555443 2333444566666654 222222 556678888888888899887755
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005099 652 AMKDTMAALNQEVMQLG 668 (714)
Q Consensus 652 ~~~~~~~~l~~~~~~i~ 668 (714)
+-++-+..++..+..+.
T Consensus 191 ~A~eil~~l~~~~~~l~ 207 (560)
T PF06160_consen 191 EAREILEKLKEETDELE 207 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444444
No 167
>PRK07058 acetate kinase; Provisional
Probab=45.98 E-value=2.1e+02 Score=31.66 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCC-CchhHHHHHHhhc
Q 005099 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGST-RIPAVQELVKKMT 426 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGss-rip~v~~~l~~~f 426 (714)
++-+..++.+.|-...... ..+|.|+++||-. ..+.|++.+.+.+
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 3444556666555555543 3599999999999 9999999998876
No 168
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=45.21 E-value=18 Score=41.84 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEEC
Q 005099 78 VVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~ 95 (714)
++|||+|||+++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 799999999999999853
No 169
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=45.12 E-value=19 Score=41.17 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.0
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
.++|||+|||+++++++..
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 5899999999999999853
No 170
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=44.78 E-value=42 Score=37.85 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=45.9
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCC---eeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEc
Q 005099 216 VPAYFNDSQRTATKDAGRIAGLD---VLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVG 281 (714)
Q Consensus 216 VPa~f~~~qR~~l~~Aa~~AGl~---~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~ 281 (714)
++......--+.+.+|.+.-|+. +..++|+.++..++..+... ++++=+=+|.||=-+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~--~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP--NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC--CcEEEEEECCCccceeeeecc
Confidence 34444555667888888888875 77899999998887766543 566666789998666555554
No 171
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=43.76 E-value=1.6e+02 Score=29.83 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 380 DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 380 ~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
.+|.-+.+..++++...+ -+.|++|||-.+.--+|+++..+.
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc 278 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMC 278 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHH
Confidence 344455555666666543 468999999999999999998887
No 172
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=43.62 E-value=20 Score=34.55 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=17.0
Q ss_pred CeEEEEEcCccceEEEEEE
Q 005099 76 EKVVGIDLGTTNSAVAAME 94 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~ 94 (714)
..|+|||-|++++..|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4699999999999999875
No 173
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=43.21 E-value=24 Score=33.06 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.2
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 005099 76 EKVVGIDLGTTNSAVAAMEGG 96 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g 96 (714)
..++|||+||-.+.||+....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 469999999999999987654
No 174
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=42.95 E-value=86 Score=34.94 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR 428 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~ 428 (714)
++++-+-+++.+..++.+.+.++++.+++|..++++|=.+..-.+.-.=-+.++.
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~ 109 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGR 109 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhcc
Confidence 4566667778888999999999999999999999999766555554433333333
No 175
>smart00030 CLb CLUSTERIN Beta chain.
Probab=42.81 E-value=3.3e+02 Score=26.95 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHH
Q 005099 612 VYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEG--STQAMKDTMAALNQEVMQLG 668 (714)
Q Consensus 612 i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~--~~~~~~~~~~~l~~~~~~i~ 668 (714)
+-+|+..++. ++++++++...|++..+-=++. ...+.+++|++-+..|+.-+
T Consensus 31 vKqMK~~mer-----~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm 84 (206)
T smart00030 31 VKQIKTLIEK-----TNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETM 84 (206)
T ss_pred HHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555552 4566666666666665433332 35566667777666664433
No 176
>PRK13318 pantothenate kinase; Reviewed
Probab=42.72 E-value=25 Score=36.43 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCe
Q 005099 78 VVGIDLGTTNSAVAAMEGGK 97 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~ 97 (714)
+++||+|.|+++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 78999999999999998653
No 177
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=42.35 E-value=3e+02 Score=27.81 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=6.8
Q ss_pred CCChHHHHHHHH
Q 005099 575 TLPNDEVQRMVQ 586 (714)
Q Consensus 575 ~l~~~ei~~~~~ 586 (714)
.|+.+|++++..
T Consensus 39 ~l~nee~~eLk~ 50 (230)
T PF03904_consen 39 SLENEEIQELKR 50 (230)
T ss_pred HHhHHHHHHHHH
Confidence 355666666554
No 178
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=41.88 E-value=1.1e+02 Score=34.41 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=15.9
Q ss_pred CceEEEEEeCCcceEEEEEEE
Q 005099 260 NETILVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~ 280 (714)
..++-++||||+++.|+..--
T Consensus 163 ~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEET
T ss_pred CceEEEEecCCcceeeeeccC
Confidence 578999999999999995543
No 179
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=41.47 E-value=67 Score=25.26 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCe
Q 005099 198 VDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDV 239 (714)
Q Consensus 198 ~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~ 239 (714)
.+....+...+ ....++.|+.++..||..+.+.|+..||.-
T Consensus 5 ~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 5 KAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444444433 336789999999999999999999999865
No 180
>PLN02596 hexokinase-like
Probab=40.78 E-value=4.7e+02 Score=29.90 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCC--CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEE
Q 005099 221 NDSQRTATKDAGRIAGL--DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 221 ~~~qR~~l~~Aa~~AGl--~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~ 280 (714)
...-.+.+.+|...-|+ +++.|+|+.++..++..+... ...+=+=+|-||=-+.+-++
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~--~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK--DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC--CeEEEEEEecccceEEEEEc
Confidence 34555667788777776 568899999998887766532 34443447888644443333
No 181
>PLN02914 hexokinase
Probab=38.81 E-value=93 Score=35.48 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCC--CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEE
Q 005099 224 QRTATKDAGRIAGL--DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 224 qR~~l~~Aa~~AGl--~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
-.+.+.+|.+.-|+ ++..|||+.++..++..+... ...+=+=+|-||=-+.+-
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~--~~~iGlIlGTGtNacY~E 261 (490)
T PLN02914 207 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD--DVMVAVILGTGTNACYVE 261 (490)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC--CceEEEEEECCeeeEEEe
Confidence 34455555555454 678899999998877665532 344444478876444443
No 182
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=38.29 E-value=96 Score=32.45 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCCCchhHHHHHHhhcCC----CCCcCCCChhHHHhHHHH
Q 005099 400 FKDLDEVILVGGSTRIPAVQELVKKMTGR----EPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 400 ~~~i~~VvLvGGssrip~v~~~l~~~fg~----~~~~~~np~eaVA~GAa~ 446 (714)
+..+|.|+|+||.++...+-++|.+.... -+.-..+-.+|-|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 46799999999999999999999887632 223344667889998863
No 183
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.14 E-value=67 Score=24.96 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCe
Q 005099 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDV 239 (714)
Q Consensus 196 ~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~ 239 (714)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 4445555555444 45679999 89999999999999999864
No 184
>PLN02377 3-ketoacyl-CoA synthase
Probab=38.08 E-value=89 Score=35.77 Aligned_cols=72 Identities=7% Similarity=0.049 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEE-EcCCCCchhHHHHHHhhcCCCC---CcCCCChhHHHhHHH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVIL-VGGSTRIPAVQELVKKMTGREP---NVTVNPDEVVALGAA 445 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvL-vGGssrip~v~~~l~~~fg~~~---~~~~np~eaVA~GAa 445 (714)
++...++..+-+...++++|+++++++++||.|++ +.+....|.+--+|.+.+|.+. ...++..-|.+.-.+
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~a 240 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIA 240 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHH
Confidence 33344444445567778999999999999999987 4455568999999999998652 334444344443333
No 185
>PLN02405 hexokinase
Probab=36.76 E-value=1.4e+02 Score=34.04 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCC--CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEE
Q 005099 224 QRTATKDAGRIAGL--DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSV 277 (714)
Q Consensus 224 qR~~l~~Aa~~AGl--~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv 277 (714)
-.+.+.+|...-|+ ++..|||+.++..++..+.. +...+=+=+|-||=-+.+
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~--~~~~iG~IlGTGtNacY~ 260 (497)
T PLN02405 207 VVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN--PDVVAAVILGTGTNAAYV 260 (497)
T ss_pred HHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC--CCceEEEEEeCCeeeEEE
Confidence 34555666655565 56789999999887766653 234445557888644433
No 186
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=85 Score=33.79 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=37.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 371 RVKFEELCSD----LLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 371 r~efe~l~~~----l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
.++.+++|.. .++-+.+..+++|+..+ .+.++++||-+....+|+++++..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3444555543 44555666677777644 567999999999999999999876
No 187
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=36.17 E-value=2e+02 Score=24.73 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 005099 658 AALNQEVMQLGQSLYNQPG 676 (714)
Q Consensus 658 ~~l~~~~~~i~~~~~~~~~ 676 (714)
.+|+.+++.|..||.+...
T Consensus 46 ~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 5688888999999887533
No 188
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=35.86 E-value=5.6e+02 Score=27.21 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCc-hhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHh
Q 005099 380 DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRI-PAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 380 ~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssri-p~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~l 451 (714)
.++++....|...++...+ ......+.|.||.... ++..+..++..-. +|..-+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~------~~~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLV------PPIGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcC------CccccHHHHHHHHHHHh
Confidence 4666666777777776532 2445689999999876 8888777776533 23566788888887653
No 189
>PLN02669 xylulokinase
Probab=35.30 E-value=36 Score=39.59 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.1
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~ 95 (714)
...++|||+||+.+++++++.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~ 27 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS 27 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC
Confidence 457999999999999998853
No 190
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=34.85 E-value=1.1e+02 Score=31.95 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCC-------CCCcCCCChhHHHhHHHHHHh
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGR-------EPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~-------~~~~~~np~eaVA~GAa~~aa 449 (714)
+++.|+|-|+.+..+.+.+.+++.+.. ++......+.+.++|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 467888888877666666666665532 122233456788999998764
No 191
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.84 E-value=3.7e+02 Score=31.35 Aligned_cols=87 Identities=13% Similarity=0.356 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH----hccCCC--HHHHHHHHHHHHHHHHHHhcCCHH
Q 005099 578 NDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE----LGDKVP--AEVKGKVEGKLKELKDAIAEGSTQ 651 (714)
Q Consensus 578 ~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~----~~~~~~--~~~~~~~~~~l~~~~~wl~~~~~~ 651 (714)
++++..+...+..+...+++.|..+ .+|......+|+.|-. |...++ +.....+....+++.+|...+|..
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr~~v---~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNREEV---EQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 4567777777777766665555433 3344445666777754 323222 556788888889999999988754
Q ss_pred HHHHHHHHHHHHHHHH
Q 005099 652 AMKDTMAALNQEVMQL 667 (714)
Q Consensus 652 ~~~~~~~~l~~~~~~i 667 (714)
+-++-+..|+.....+
T Consensus 195 ~A~e~l~~l~~~~~~l 210 (569)
T PRK04778 195 EAREILDQLEEELAAL 210 (569)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 192
>PRK12440 acetate kinase; Reviewed
Probab=34.78 E-value=3.8e+02 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchh-HHHHHHhhc
Q 005099 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPA-VQELVKKMT 426 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~-v~~~l~~~f 426 (714)
++-++.++.+.|-......+ .+|.|+++||-..... +++.+.+.+
T Consensus 300 ~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l 345 (397)
T PRK12440 300 FEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNL 345 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhh
Confidence 33445566666655555433 5899999999998776 999988765
No 193
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=34.34 E-value=56 Score=30.82 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=16.6
Q ss_pred EEEEEcCccceEEEEEE--CCeeEEE
Q 005099 78 VVGIDLGTTNSAVAAME--GGKPTIV 101 (714)
Q Consensus 78 vIGID~GTt~s~va~~~--~g~~~ii 101 (714)
|+|||-|++++..|+.+ +++..++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 79999999999999874 3444444
No 194
>PRK08868 flagellar protein FlaG; Provisional
Probab=34.29 E-value=1e+02 Score=28.91 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=34.8
Q ss_pred eeEEEEEecCC-ceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHH
Q 005099 540 QIEVKFDIDAN-GILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAER 590 (714)
Q Consensus 540 ~i~v~f~id~~-gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~ 590 (714)
...+.|++|.+ |.+.|++.|..||... ..++.|++-++.+.+.+
T Consensus 88 n~~L~F~vdeetgr~VVkViD~~T~EVI-------RQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 88 NKGLSFRVDEESGRDVVTIYEASTGDII-------RQIPDEEMLEVLRRLAE 132 (144)
T ss_pred cCceEEEEecCCCCEEEEEEECCCCcee-------eeCCCHHHHHHHHHHHH
Confidence 34689999885 8889999999998764 46788888888776554
No 195
>PLN03170 chalcone synthase; Provisional
Probab=33.90 E-value=1.2e+02 Score=33.81 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCC-CchhHHHHHHhhcCCCCC
Q 005099 379 SDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGST-RIPAVQELVKKMTGREPN 431 (714)
Q Consensus 379 ~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGss-rip~v~~~l~~~fg~~~~ 431 (714)
+...+-..+..+++|+++++++++|+.|+++-.+. .+|.+--.|.+.+|.+..
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 157 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPS 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcc
Confidence 34445566778999999999999999988776544 699999999999986543
No 196
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=33.63 E-value=1.7e+02 Score=30.51 Aligned_cols=54 Identities=31% Similarity=0.390 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCCchh----HHHHHHhhc---C--CCCCc--CCCChhHHHhHHHHHHhHhhCC
Q 005099 401 KDLDEVILVGGSTRIPA----VQELVKKMT---G--REPNV--TVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 401 ~~i~~VvLvGGssrip~----v~~~l~~~f---g--~~~~~--~~np~eaVA~GAa~~aa~ls~~ 454 (714)
...+.|+|.|-++++|- |++.|++.| | .++.. ..---.-.|.|||+.|.-++|.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 45678999999999865 556666666 2 22221 1222344788999888776664
No 197
>PRK11637 AmiB activator; Provisional
Probab=33.00 E-value=4.8e+02 Score=29.15 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=36.4
Q ss_pred HHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 604 TKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAE--GSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 604 ~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
..++++.-+..+...|... ..+.+.+...|++++.-+.. ......+.+++.+++.+......+|..
T Consensus 69 ~~~~~~~~l~~l~~qi~~~-----~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQA-----SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444444431 22333444444444444442 246677778888888888888888874
No 198
>PRK13320 pantothenate kinase; Reviewed
Probab=32.93 E-value=50 Score=34.00 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.3
Q ss_pred CeEEEEEcCccceEEEEEECCe
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGK 97 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~ 97 (714)
++++.||.|+|+++.+++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 4699999999999999998664
No 199
>PRK13331 pantothenate kinase; Reviewed
Probab=32.90 E-value=51 Score=34.05 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=20.2
Q ss_pred CCeEEEEEcCccceEEEEEECCe
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGK 97 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~ 97 (714)
...++.||.|+|+++++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECCE
Confidence 56789999999999999998654
No 200
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.85 E-value=4.6e+02 Score=29.43 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhhhhHHHHHHHHHHHhccCC---------CHHHHHHHHHHHHHHHHH
Q 005099 578 NDEVQRMVQEAERFAKE----DKEKRDAIDTKNQADSVVYQTEKQLKELGDKV---------PAEVKGKVEGKLKELKDA 644 (714)
Q Consensus 578 ~~ei~~~~~~~~~~~~~----d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~~w 644 (714)
.+++.++++++.++.+. +++.|+...--|.++++...|+.+.+.+...+ -+++.+.+++..+++..-
T Consensus 280 n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 280 NDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35666667666665443 34444445556888889888888876532211 244445555555555555
Q ss_pred Hhc
Q 005099 645 IAE 647 (714)
Q Consensus 645 l~~ 647 (714)
+..
T Consensus 360 ~~k 362 (622)
T COG5185 360 LRK 362 (622)
T ss_pred HHh
Confidence 544
No 201
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=32.83 E-value=3.1e+02 Score=26.25 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHH
Q 005099 574 STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELG--DKVPAEVKGKVEGKLKELKD 643 (714)
Q Consensus 574 ~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~ 643 (714)
..++.|-.+++.+++.++.++- |..+...-.+..+.+.... ..+++++..++.+.|+.+-+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~---------k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~ 147 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEA---------KVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTD 147 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHH
Confidence 4578888888887776654432 2222222223333333322 23788888888877776644
No 202
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=32.79 E-value=95 Score=34.19 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 005099 650 TQAMKDTMAALNQEVMQLGQSLYNQPGAGA 679 (714)
Q Consensus 650 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~ 679 (714)
.++++.+++.|++.+..+..++-...++++
T Consensus 27 i~~L~~ql~aLq~~v~eL~~~laa~~~aa~ 56 (514)
T PF11336_consen 27 IKALQAQLQALQDQVNELRAKLAAKPAAAP 56 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 567788888899999999988776555443
No 203
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=32.74 E-value=6.2e+02 Score=26.81 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 649 STQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 649 ~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
-+.+|..-+..|+.+.+.|-+....
T Consensus 209 ~K~~Y~~slrnLE~ISd~IHeeRss 233 (426)
T KOG2008|consen 209 AKGEYKMSLRNLEMISDEIHEERSS 233 (426)
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhh
Confidence 3778999999999999999887665
No 204
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=32.74 E-value=1.4e+02 Score=31.50 Aligned_cols=48 Identities=27% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCchhHHHHHHhhcCC---------CCCcCCCChhHHHhHHHHHH
Q 005099 401 KDLDEVILVGGSTRIPAVQELVKKMTGR---------EPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 401 ~~i~~VvLvGGssrip~v~~~l~~~fg~---------~~~~~~np~eaVA~GAa~~a 448 (714)
-+++.|+|-||.+..+.+.+.|++.+.. ++......+.+.++|||..+
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 3467888877777666655666555421 12233355688999999875
No 205
>PLN03173 chalcone synthase; Provisional
Probab=32.61 E-value=1.3e+02 Score=33.28 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCC-CchhHHHHHHhhcCCCC
Q 005099 380 DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGST-RIPAVQELVKKMTGREP 430 (714)
Q Consensus 380 ~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGss-rip~v~~~l~~~fg~~~ 430 (714)
.-.+-..+.++++|+++++++++||.|+++.-+. ..|.+--.|.+.+|...
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 3445556778999999999999999998876544 58999999999998654
No 206
>PTZ00297 pantothenate kinase; Provisional
Probab=32.42 E-value=1.5e+02 Score=38.59 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=36.3
Q ss_pred CCCCCEEEEEcCC-CCchhHHHHHHhhc------CCCCCcCCCChhHHHhHHHHHH
Q 005099 400 FKDLDEVILVGGS-TRIPAVQELVKKMT------GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 400 ~~~i~~VvLvGGs-srip~v~~~l~~~f------g~~~~~~~np~eaVA~GAa~~a 448 (714)
..+++.|+++|++ ...|...+.|..++ ..+....-+-...-|+||++..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 3678999999994 56899998887664 1234445577788999998763
No 207
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=32.33 E-value=1.2e+02 Score=33.04 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC--CC--CcCCCChhHHHhHHH
Q 005099 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR--EP--NVTVNPDEVVALGAA 445 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~--~~--~~~~np~eaVA~GAa 445 (714)
++.+..++...|-......+ .++|.|++.||.+..+.+.+.+.+.+.. ++ ....+-.++.|.||.
T Consensus 272 ~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 272 LDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 33444444444444444321 2589999999999999999999888743 22 122233567788875
No 208
>PLN03172 chalcone synthase family protein; Provisional
Probab=31.83 E-value=1.3e+02 Score=33.24 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCC-CchhHHHHHHhhcCCCCC
Q 005099 379 SDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGST-RIPAVQELVKKMTGREPN 431 (714)
Q Consensus 379 ~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGss-rip~v~~~l~~~fg~~~~ 431 (714)
+...+-..+.++++|+++++++++|+.|+++-.+. .+|.+--.|.+.+|.+..
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~~ 153 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPS 153 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCCC
Confidence 34445556778999999999999999998776554 699999999999986543
No 209
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=31.71 E-value=1.1e+02 Score=27.71 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=31.2
Q ss_pred eEEEEEecC-CceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHH
Q 005099 541 IEVKFDIDA-NGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEA 588 (714)
Q Consensus 541 i~v~f~id~-~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~ 588 (714)
-.|.|++|. -|.+.|++.|..||+.. ...+++++-++.+.+
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVI-------RqIPpee~L~l~~r~ 108 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVI-------RQIPPEEALELAARM 108 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcch-------hhCChHHHHHHHHHH
Confidence 358899876 69999999999999865 457777776655543
No 210
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=31.70 E-value=1.9e+02 Score=27.51 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHH----------------HHHHHHHHHHcCCCeeEEechhHH
Q 005099 185 AAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQ----------------RTATKDAGRIAGLDVLRIINEPTA 248 (714)
Q Consensus 185 ~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~q----------------R~~l~~Aa~~AGl~~~~li~Ep~A 248 (714)
++++++..+.+.+.+...++ +.. .+.|++|..++... .+.+.+ ..+++ +.+.|+-.|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~p-v~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVP-VIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSE-EEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceE-EEEecCCCc
Confidence 46677766666665554443 222 56666665554322 222322 33554 489999999
Q ss_pred HHHHccccc--CCCceEEEEEeCCcceEEEEE
Q 005099 249 ASLAYGFEK--KNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 249 AAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
+|++..... ...++++.+-+|-| +-.+++
T Consensus 104 ~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 999876532 23568888889876 455555
No 211
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=31.32 E-value=1.3e+02 Score=31.75 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEE-EcCCCCchhHHHHHHhhcCCC
Q 005099 385 LKTPVETSLRDAKLSFKDLDEVIL-VGGSTRIPAVQELVKKMTGRE 429 (714)
Q Consensus 385 i~~~i~~~L~~a~~~~~~i~~VvL-vGGssrip~v~~~l~~~fg~~ 429 (714)
+...|+++|+++++++.+||.+|+ +..++-.|.+-.+|.+.||..
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 456678899999999999996654 677899999999999999864
No 212
>PRK13326 pantothenate kinase; Reviewed
Probab=31.13 E-value=52 Score=34.29 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCeEEEEEcCccceEEEEEECCe
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGK 97 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~ 97 (714)
.++++.||.|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 56789999999999999998764
No 213
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=30.37 E-value=5.8e+02 Score=28.22 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCC-chhHHHHHHhhc
Q 005099 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTR-IPAVQELVKKMT 426 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssr-ip~v~~~l~~~f 426 (714)
++-+..++.+.|-....... ..+|.|+++||.+. .+.|++.+.+.+
T Consensus 299 ~d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 299 LDAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 34445556665555555432 46899999999996 578888887765
No 214
>PHA03185 UL14 tegument protein; Provisional
Probab=30.21 E-value=1.8e+02 Score=28.59 Aligned_cols=33 Identities=6% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005099 588 AERFAKEDKEKRDAIDTKNQADSVVYQTEKQLK 620 (714)
Q Consensus 588 ~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~ 620 (714)
++...++-+..+.+++..-.+..++..-|+.|.
T Consensus 67 ve~VeQKar~Iq~rVEeQ~a~r~iL~~hRRyL~ 99 (214)
T PHA03185 67 LEMLRQHAACVKIRVEEQAERRDFLIAHRRYLD 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444555556666666666666666664
No 215
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=29.96 E-value=62 Score=32.40 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=23.5
Q ss_pred CceEEEEEeCCcceEEEEEEEcCc-eEEE
Q 005099 260 NETILVFDLGGGTFDVSVLEVGDG-VFEV 287 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~~~~-~~~v 287 (714)
...+|++|+||.++-+.++++.+. .+++
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 468999999999999999999865 4444
No 216
>PRK07738 flagellar protein FlaG; Provisional
Probab=29.83 E-value=1.4e+02 Score=27.02 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=34.3
Q ss_pred eEEEEEecC-CceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHH
Q 005099 541 IEVKFDIDA-NGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERF 591 (714)
Q Consensus 541 i~v~f~id~-~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~ 591 (714)
..+.|++|. .|.+.|.+.|..|++.. ..++.+++-++...+.++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVI-------RQIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVI-------REIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeee-------eeCCCHHHHHHHHHHHHH
Confidence 468999988 49999999999998764 457888888777665543
No 217
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.71 E-value=5.5e+02 Score=25.60 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=8.1
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 005099 602 IDTKNQADSVVYQTEKQL 619 (714)
Q Consensus 602 ~~~~n~lE~~i~~~~~~l 619 (714)
.+++.+...++.+.+...
T Consensus 115 ~~Ar~eA~~Ii~~Ar~ea 132 (204)
T PRK09174 115 AQARAKAHSIAQAAREAA 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 218
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=29.61 E-value=4.8e+02 Score=24.50 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhHH---HHHHH------HHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 005099 575 TLPNDEVQRMVQEAERFAKEDKE---KRDAI------DTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAI 645 (714)
Q Consensus 575 ~l~~~ei~~~~~~~~~~~~~d~~---~~~~~------~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl 645 (714)
..|+++|+.+....+.+...-+. .+..+ +.+|-+-.=.-.+|..|.......+++++..+.+.-.++.+-|
T Consensus 29 tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L 108 (142)
T TIGR03042 29 TYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDL 108 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHH
Confidence 46788887776665554332211 11111 2333333333344444444445677888888888887777777
Q ss_pred hc
Q 005099 646 AE 647 (714)
Q Consensus 646 ~~ 647 (714)
.+
T Consensus 109 ~~ 110 (142)
T TIGR03042 109 EK 110 (142)
T ss_pred HH
Confidence 64
No 219
>PLN03168 chalcone synthase; Provisional
Probab=28.60 E-value=1.5e+02 Score=32.67 Aligned_cols=55 Identities=11% Similarity=0.268 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCC-CCchhHHHHHHhhcCCCCC
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGS-TRIPAVQELVKKMTGREPN 431 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGs-srip~v~~~l~~~fg~~~~ 431 (714)
..+...+-..+..+++|+++++++++||.|+++-.+ -.+|.+--.|.+.+|.+..
T Consensus 97 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 152 (389)
T PLN03168 97 VVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKPT 152 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCCc
Confidence 334455556778899999999999999999876433 3589999999999986543
No 220
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.39 E-value=3.9e+02 Score=24.17 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005099 629 EVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLY 672 (714)
Q Consensus 629 ~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~ 672 (714)
.++..+...+++-.+.++. ....++.+.+.|++.+..+...+.
T Consensus 67 qd~~e~~~~l~~r~E~ie~-~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 67 VDKTKVEKELKERKELLEL-RSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555553 355555566666666655555544
No 221
>COG3679 Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms]
Probab=28.22 E-value=4.6e+02 Score=23.81 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHH---HHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCC-HHHHH
Q 005099 579 DEVQRMVQEAERFAKEDKEKR---DAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGS-TQAMK 654 (714)
Q Consensus 579 ~ei~~~~~~~~~~~~~d~~~~---~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~-~~~~~ 654 (714)
.++.+++..++++..--..++ .-.+++..+++|. +++..+.....+.-+-+.+.+. .+.++..-++.++ ...|.
T Consensus 10 ~eL~~~i~~seey~~~~~~~~~v~~d~eA~~lf~~F~-~~q~~~q~~q~~G~~~d~~~~~-~~q~~~~~i~~~e~v~~f~ 87 (118)
T COG3679 10 QELAEAIRDSEEYQALKEAKRAVEADEEAKKLFEEFR-QLQEQFQEKQRFGYEPDYEEVT-KAQELKQEIQLNEKVSAFM 87 (118)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHH-HHHHHHHHHhhcHHHHHHH
Confidence 356667766665544333222 3345555566653 4555555422222111223344 6667777777654 67777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005099 655 DTMAALNQEVMQLGQSLY 672 (714)
Q Consensus 655 ~~~~~l~~~~~~i~~~~~ 672 (714)
++-+.|..+++.+...+.
T Consensus 88 eaE~~L~~~l~el~~iI~ 105 (118)
T COG3679 88 EAEQALSSLLDELNKIIA 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777666544
No 222
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=27.31 E-value=4e+02 Score=22.92 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 005099 658 AALNQEVMQLGQSLYNQPGAG 678 (714)
Q Consensus 658 ~~l~~~~~~i~~~~~~~~~~~ 678 (714)
.+|+..++.|..|+-+..++.
T Consensus 47 ~eL~~aFeeiAaRFR~g~~~~ 67 (98)
T PRK13848 47 AELQAAFEELAKRFRGGKGAA 67 (98)
T ss_pred HHHHHHHHHHHHHHhcCCCcc
Confidence 457888888888888765554
No 223
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=27.24 E-value=56 Score=32.71 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCC---eeEEechhHHHHHHccc
Q 005099 221 NDSQRTATKDAGRIAGLD---VLRIINEPTAASLAYGF 255 (714)
Q Consensus 221 ~~~qR~~l~~Aa~~AGl~---~~~li~Ep~AAAlay~~ 255 (714)
...-.+.+.+|....|++ ++.++|+.+|.-++..+
T Consensus 167 G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 167 GKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp TSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 333445667777777764 67899999998876544
No 224
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=26.82 E-value=40 Score=31.08 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.9
Q ss_pred EEEEcCccceEEEEEEC
Q 005099 79 VGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 79 IGID~GTt~s~va~~~~ 95 (714)
+|||+|+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998654
No 225
>PRK08452 flagellar protein FlaG; Provisional
Probab=26.64 E-value=1.7e+02 Score=26.81 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=33.0
Q ss_pred eEEEEEecC-CceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHH
Q 005099 541 IEVKFDIDA-NGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAER 590 (714)
Q Consensus 541 i~v~f~id~-~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~ 590 (714)
..+.|.+|. .+.+.|++.|..|++.. ..++++++-++.+...+
T Consensus 71 ~~L~F~~de~~~~~vVkVvD~~T~eVI-------RqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 71 TNIRFGYNDKIKGLVVSVKEANGGKVI-------REIPSKEAIELMEYMRD 114 (124)
T ss_pred CceEEEEcCCCCcEEEEEEECCCCcee-------eeCCCHHHHHHHHHHHH
Confidence 468899977 48889999999998765 45778888777665544
No 226
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=26.60 E-value=4.5e+02 Score=26.89 Aligned_cols=38 Identities=3% Similarity=0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 005099 628 AEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQ 666 (714)
Q Consensus 628 ~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~ 666 (714)
.-+..++...-.+...||++. ...++++++.++++++.
T Consensus 214 ~~qi~Kilnah~~sLqwl~d~-st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 214 IIQIEKILNAHMDSLQWLDDN-STQLEKKLDKIKKLKDD 251 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhcc
Confidence 455667777777788899986 45677888888887653
No 227
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=26.09 E-value=1.2e+02 Score=33.70 Aligned_cols=48 Identities=33% Similarity=0.428 Sum_probs=31.3
Q ss_pred cCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHH-HHHHcccc
Q 005099 209 VTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTA-ASLAYGFE 256 (714)
Q Consensus 209 v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~A-AAlay~~~ 256 (714)
+.++|++-|..-+-.---.+.-||.++|.+.+.-+--..| ||++|+.+
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTe 185 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTE 185 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--S
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCC
Confidence 4689999998876666678999999999999999998888 67899875
No 228
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=26.08 E-value=5e+02 Score=25.29 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=36.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHH
Q 005099 574 STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKEL--GDKVPAEVKGKVEGKLKELKD 643 (714)
Q Consensus 574 ~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~ 643 (714)
..+++|-..++.+.+.++.++ +|..+...-.+..+.+... ...+++++..++.+.++.+-+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~---------~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEE---------AKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence 568888888888877766543 2222323333344444432 234788888888888877643
No 229
>PRK00292 glk glucokinase; Provisional
Probab=26.04 E-value=63 Score=34.44 Aligned_cols=44 Identities=36% Similarity=0.366 Sum_probs=30.2
Q ss_pred HcCCCeeEEechhHHHHHHcccc---------cCC---CceEEEEEeCCcceEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE---------KKN---NETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~---------~~~---~~~vLVvD~GgGT~Dvsv~ 278 (714)
..|++.+.+.|+-.|+|++-... ... ...++++-+|.| +-.+++
T Consensus 89 ~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 89 ELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 45887679999999999985431 111 367888888877 444544
No 230
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=25.41 E-value=1.5e+02 Score=33.90 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.9
Q ss_pred CCeEEEEEcCccceEEEEEE
Q 005099 75 NEKVVGIDLGTTNSAVAAME 94 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~ 94 (714)
...++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 45799999999999999986
No 231
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=25.38 E-value=6.4e+02 Score=24.81 Aligned_cols=63 Identities=21% Similarity=0.369 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005099 574 STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKD 643 (714)
Q Consensus 574 ~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 643 (714)
..|++|--.++++.+..+.++-+ +..||--......++....+ ..+++++..+..+.++.+-+
T Consensus 105 P~lTeErRkelvK~~k~~~Eeak-----vaiRniRrda~d~iKK~~K~--~~isEDe~k~~e~~iQKlTd 167 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAK-----VAVRNIRRDANDKIKKLEKD--KEISEDEVKKAEEEIQKLTD 167 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHH
Confidence 56888888888888877765432 33444332232333222221 24889999888888888754
No 232
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=25.18 E-value=1.5e+02 Score=30.69 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAA 445 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa 445 (714)
.++.|+| |+|..|++.+.+++.++..+ .-+||.+++|.=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4666655 99999999999999997654 56899888887443
No 233
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.01 E-value=6.5e+02 Score=25.06 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005099 602 IDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLY 672 (714)
Q Consensus 602 ~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~ 672 (714)
.+++.+....+.+++..-+...+.+-.+-++.....+++.+.-++.+-....++-.+++.+....+..++.
T Consensus 110 ~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL 180 (205)
T PRK06231 110 ENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELI 180 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444432211222233334444444444444333223333333333344444444443
No 234
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=24.96 E-value=6.3e+02 Score=27.38 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005099 625 KVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQ 662 (714)
Q Consensus 625 ~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~ 662 (714)
.+++++|..+-..++++.+-++. .+.++.++|+.
T Consensus 48 ~l~~eer~~~G~~~n~~k~~~~~----~~~~~~~~l~~ 81 (339)
T PRK00488 48 KLPPEERKEAGALINELKQAIEA----ALEERKEELEA 81 (339)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 57899999999999999876654 44444444444
No 235
>PLN02854 3-ketoacyl-CoA synthase
Probab=24.58 E-value=2.1e+02 Score=33.03 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=41.8
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEE-EcCCCCchhHHHHHHhhcCCC
Q 005099 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVIL-VGGSTRIPAVQELVKKMTGRE 429 (714)
Q Consensus 367 ~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvL-vGGssrip~v~~~l~~~fg~~ 429 (714)
+.-.|+|.|.+ +...++++|+++++++++||.||+ +.+....|.+-.+|.+.+|.+
T Consensus 181 ~~~~r~ea~~v-------~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 181 MEEARAEAEAV-------MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 33445555544 445567889999999999999987 444556899999999999864
No 236
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=24.32 E-value=23 Score=39.67 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC------CC---------CCcCCCChhHHHhHHHHHHh
Q 005099 385 LKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG------RE---------PNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 385 i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg------~~---------~~~~~np~eaVA~GAa~~aa 449 (714)
|+..|..++.+- ....--+.|.+|||+...|.+.+.|++..- .+ ..+..||...+=.|||++|.
T Consensus 510 ii~sid~~~sdd-~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~ 588 (618)
T KOG0797|consen 510 IISSIDSALSDD-TKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAI 588 (618)
T ss_pred HHHhhhhhccch-hhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhH
Confidence 444444444431 112224689999999999999999988762 11 12335788888899999987
Q ss_pred Hhh
Q 005099 450 VLA 452 (714)
Q Consensus 450 ~ls 452 (714)
+-.
T Consensus 589 l~~ 591 (618)
T KOG0797|consen 589 LDF 591 (618)
T ss_pred HHH
Confidence 644
No 237
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=24.02 E-value=1.2e+02 Score=29.06 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.2
Q ss_pred eEEEEEcCccc-eEEEEEECCeeEEEeCCCCC
Q 005099 77 KVVGIDLGTTN-SAVAAMEGGKPTIVTNAEGQ 107 (714)
Q Consensus 77 ~vIGID~GTt~-s~va~~~~g~~~ii~n~~g~ 107 (714)
++.|||+|--. +++|++.+|..+++..+..+
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEccccc
Confidence 57899998766 58889999999999776553
No 238
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=23.96 E-value=2.6e+02 Score=22.77 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=35.3
Q ss_pred eEEEEEecCCceEEEEEEEcCCCceeeeEEccC---CCCChHHHHHHHHHHH
Q 005099 541 IEVKFDIDANGILSVSAVDKGTGKKQDITITGA---STLPNDEVQRMVQEAE 589 (714)
Q Consensus 541 i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~---~~l~~~ei~~~~~~~~ 589 (714)
....+.++.+|.++|...|..+|... +++++- .-.|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 45778899999999999999998763 334332 4457778888877654
No 239
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.78 E-value=5.7e+02 Score=26.40 Aligned_cols=73 Identities=23% Similarity=0.449 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhHHH------HHHHHHHHhhhhHHHHHHHHHHHhc-c--CC---CHHHHHHHHHHHHHHH
Q 005099 575 TLPNDEVQRMVQEAERFAKEDKEK------RDAIDTKNQADSVVYQTEKQLKELG-D--KV---PAEVKGKVEGKLKELK 642 (714)
Q Consensus 575 ~l~~~ei~~~~~~~~~~~~~d~~~------~~~~~~~n~lE~~i~~~~~~l~~~~-~--~~---~~~~~~~~~~~l~~~~ 642 (714)
.++..++.++.++++.|-.+=+.+ ........+.+.++..++..+.... + .+ -.+........|.++.
T Consensus 119 ~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~ 198 (264)
T PF06008_consen 119 QLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLR 198 (264)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777766654443211 1112223334445555555543200 0 00 1334466777788888
Q ss_pred HHHhc
Q 005099 643 DAIAE 647 (714)
Q Consensus 643 ~wl~~ 647 (714)
+||.+
T Consensus 199 ~~l~e 203 (264)
T PF06008_consen 199 DLLNE 203 (264)
T ss_pred HHHHH
Confidence 88875
No 240
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=23.58 E-value=1.9e+02 Score=30.56 Aligned_cols=48 Identities=31% Similarity=0.317 Sum_probs=31.2
Q ss_pred EEEEEcCCC-CchhHHHHHHhhc----CCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 405 EVILVGGST-RIPAVQELVKKMT----GREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 405 ~VvLvGGss-rip~v~~~l~~~f----g~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
.|++|||.- ....+++-....+ +.+-.....|.+.-|.|||++|+.+.
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~ 318 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLD 318 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhc
Confidence 699999874 3444444332222 12234456889999999999999754
No 241
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.33 E-value=4.7e+02 Score=22.27 Aligned_cols=66 Identities=12% Similarity=0.288 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC
Q 005099 579 DEVQRMVQEAERFAKE--DKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEG 648 (714)
Q Consensus 579 ~ei~~~~~~~~~~~~~--d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~ 648 (714)
++++.++.+++.+... +.-.....+++..++..+.+++..+.+. ...-+++..+....+++++.++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA----ADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC
Confidence 3555555555544322 2223344556666666666666666542 1233445555555555555554
No 242
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.19 E-value=2e+02 Score=22.91 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHH
Q 005099 607 QADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKD 643 (714)
Q Consensus 607 ~lE~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~ 643 (714)
.++..+..+..+|.. |....|++-.+.-...+.++..
T Consensus 15 kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~ 53 (66)
T PF10458_consen 15 KLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEE 53 (66)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHH
Confidence 455556666667754 6666666665555555555443
No 243
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.08 E-value=2e+02 Score=22.73 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=26.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHcCCCee
Q 005099 210 TKAVVTVPAYFNDSQRTATKDAGRIAGLDVL 240 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~ 240 (714)
..-.++.|+.+++.+|+.+...|...||...
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3567778999999999999999999999653
No 244
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.00 E-value=8.9e+02 Score=25.91 Aligned_cols=80 Identities=10% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC---C--
Q 005099 575 TLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEG---S-- 649 (714)
Q Consensus 575 ~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~-- 649 (714)
..+++++.++++++.+...+ .........+++.-+...+..+++ ..+++..+.+.|++++.-++.. +
T Consensus 200 ~~d~~eL~~lk~~l~~~~~e---i~~~~~~l~e~~~~l~~l~~~I~~-----~~~~k~e~~~~I~~ae~~~~~~r~~t~~ 271 (312)
T smart00787 200 DCDPTELDRAKEKLKKLLQE---IMIKVKKLEELEEELQELESKIED-----LTNKKSELNTEIAEAEKKLEQCRGFTFK 271 (312)
T ss_pred hCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 35567777776554443222 221222222333333444444443 2566788888888888877653 2
Q ss_pred -HHHHHHHHHHHHH
Q 005099 650 -TQAMKDTMAALNQ 662 (714)
Q Consensus 650 -~~~~~~~~~~l~~ 662 (714)
...++.+++.|++
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 3344444444444
No 245
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=22.55 E-value=7.2e+02 Score=24.15 Aligned_cols=61 Identities=16% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHH
Q 005099 574 STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKEL--GDKVPAEVKGKVEGKLKELKD 643 (714)
Q Consensus 574 ~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~ 643 (714)
..|++|--.++.+.+.++.++- |..+...-.+..+.+..+ ...+++++..++.+.++.+-+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~a---------Kv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd 156 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQA---------KVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTD 156 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Confidence 4688888888887776655432 222222222222333322 135888888888888877754
No 246
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=7.1e+02 Score=29.04 Aligned_cols=59 Identities=10% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 005099 597 EKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEG--STQAMKDTMAALN 661 (714)
Q Consensus 597 ~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~--~~~~~~~~~~~l~ 661 (714)
.+++..+++++|+++...++..+.. .-+.......+..++.-|.+. -.+.++.++++|+
T Consensus 448 ~k~eie~L~~~l~~~~r~~~~~~~~------~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 448 LKREIEKLESELERFRREVRDKVRK------DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555544321 223344556666666666654 2667777777777
No 247
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=22.40 E-value=3.6e+02 Score=23.06 Aligned_cols=66 Identities=18% Similarity=0.384 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH-h--hhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhc
Q 005099 581 VQRMVQEAERFAKEDKEKRDAIDTKN-Q--ADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAE 647 (714)
Q Consensus 581 i~~~~~~~~~~~~~d~~~~~~~~~~n-~--lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~ 647 (714)
+.|+.++...|..+-.....+.+... + =+.-|-..+..|.+.. .+-++-+.+|...+.++++||..
T Consensus 9 vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~-~mipd~~~RL~~a~~~L~~~l~~ 77 (90)
T PF02970_consen 9 VKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETK-MMIPDCQQRLEKAVEDLEEFLEE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555444444433322 1 1222222333333321 22356677899999999999875
No 248
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.36 E-value=1.1e+03 Score=28.39 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005099 654 KDTMAALNQEVMQLGQS 670 (714)
Q Consensus 654 ~~~~~~l~~~~~~i~~~ 670 (714)
+.+++.|+..++.+..+
T Consensus 645 ~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 645 KDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 249
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=22.09 E-value=4.2e+02 Score=22.62 Aligned_cols=41 Identities=17% Similarity=0.403 Sum_probs=27.5
Q ss_pred HHHHHHHHHH-----hccCCCHHHHHHHHHHHHHHHHHHhcCCHHH
Q 005099 612 VYQTEKQLKE-----LGDKVPAEVKGKVEGKLKELKDAIAEGSTQA 652 (714)
Q Consensus 612 i~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~ 652 (714)
+|++|..|+. ....+++++.+.+.+.+++...-...+|...
T Consensus 2 i~~~R~~Le~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~ 47 (125)
T PF07729_consen 2 IYEVRELLEPAAARLAAQRITDEDIAELEELLEQMEEAIEDEDIEE 47 (125)
T ss_dssp HHHHHHHHHHHHHHHHGGCCCHHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4555555554 3357788888888888888887777655333
No 250
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=22.04 E-value=2.1e+02 Score=31.57 Aligned_cols=48 Identities=33% Similarity=0.458 Sum_probs=37.9
Q ss_pred cCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHH-HHHHcccc
Q 005099 209 VTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTA-ASLAYGFE 256 (714)
Q Consensus 209 v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~A-AAlay~~~ 256 (714)
+.++|+..|..=+..--..+.-||.++|.+.+..+--..| ||++|+..
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTe 171 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTE 171 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCc
Confidence 4688999998533334456888999999999888888888 78999875
No 251
>PRK14878 UGMP family protein; Provisional
Probab=21.70 E-value=2.5e+02 Score=30.20 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHH------HHHhhcCCCCCcCCCChhHHHhHH
Q 005099 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQE------LVKKMTGREPNVTVNPDEVVALGA 444 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~------~l~~~fg~~~~~~~np~eaVA~GA 444 (714)
.....+.+...++++|++++++..+||.|.++-|-...+.++- .|...++.+ ...++-.++-+..|
T Consensus 41 ~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p-~~~v~h~~~Ha~sa 112 (323)
T PRK14878 41 AQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKP-LVPVNHCIAHIEIG 112 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCC-ccccchHHHHHHhh
Confidence 3455677788899999999999999999999988777777763 333344543 45566666666543
No 252
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=3.2e+02 Score=32.25 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcC-----------C---HHHHHHHHHHHHHHHHHHHHH
Q 005099 630 VKGKVEGKLKELKDAIAEG-----------S---TQAMKDTMAALNQEVMQLGQS 670 (714)
Q Consensus 630 ~~~~~~~~l~~~~~wl~~~-----------~---~~~~~~~~~~l~~~~~~i~~~ 670 (714)
+.++....+++.+.|++.. + .++++.+.++|.+.+.++..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 6778888999999999853 1 378888999999988887653
No 253
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=21.23 E-value=1.3e+02 Score=26.94 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 005099 628 AEVKGKVEGKLKELKDAIAE 647 (714)
Q Consensus 628 ~~~~~~~~~~l~~~~~wl~~ 647 (714)
+++...+...+.+++.||+-
T Consensus 104 E~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 104 EKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888889873
No 254
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.21 E-value=3.2e+02 Score=24.53 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCC
Q 005099 325 KQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCS---DLLDRLKTPVETSLRDAKLSFK 401 (714)
Q Consensus 325 ~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~ 401 (714)
.....+|.++|+.....++..... .| ..|.+.++.++++.+.. .+.+.+.+.+.+.....++...
T Consensus 27 vEIa~~L~remd~~a~~~~~~r~~---aP---------N~y~V~Ls~~D~~~l~~~~~~l~~el~~~l~~~a~~qgy~~~ 94 (116)
T PF12401_consen 27 VEIAKALRREMDDQARVVSRGRTL---AP---------NVYTVELSPEDYERLSPWGDRLARELADYLAEHAREQGYTFV 94 (116)
T ss_dssp HHHHHHHHHHHHHT-B---TT--B---------------EEEEEEEHHHHHHH-S-SHHHHHHHHHHHHHHHHHHT-B-S
T ss_pred HHHHHHHHHHHHhCCeecCCCCEE---cC---------eeEEEEECHHHHHHHhhhHHHHHHHHHHHHHHHHHHCCCeec
Confidence 345566777777775555543321 22 57889999999999887 6777888888888887776543
No 255
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.12 E-value=2.4e+02 Score=30.28 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHH------HHHHhhcCCCCCcCCCChhHHHhHH
Q 005099 379 SDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ------ELVKKMTGREPNVTVNPDEVVALGA 444 (714)
Q Consensus 379 ~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~------~~l~~~fg~~~~~~~np~eaVA~GA 444 (714)
....+.+...|+++|++++++..+||.|.++-|-...+.++ +.|...++. +...++-.++-+..|
T Consensus 43 ~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~-p~~~v~h~~aHa~sa 113 (322)
T TIGR03722 43 EHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNK-PLVGVNHCVAHIEIG 113 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCC-CeechhhHHHHHHhh
Confidence 45566778889999999999999999999999877777766 223333444 344556666666533
No 256
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=21.11 E-value=3.1e+02 Score=22.00 Aligned_cols=56 Identities=13% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHHHhHhhCCCch--hhhhhhccceeEEEEcCCCcEEEEeCC-CCccccHHHHHHHHHH
Q 005099 140 FFSVKRFIGRKMV--EVDEESKQVSYRVVRDENGNVKLECPA-IGKQFAAEEISAQVLR 195 (714)
Q Consensus 140 i~~~KrllG~~~~--~v~~~~~~~~~~v~~~~~g~~~v~~~~-~~~~~~~eev~a~~L~ 195 (714)
...+++++|...+ ++....+.+.|.+....++.+.+..|. ......+++++.++++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 3457899998766 477788888998887666666666553 2334567777777765
No 257
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.00 E-value=5.7e+02 Score=26.74 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 005099 600 DAIDTKNQADSVVYQTEK 617 (714)
Q Consensus 600 ~~~~~~n~lE~~i~~~~~ 617 (714)
++.....+|.+.++.||.
T Consensus 86 dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 86 DRETEIDELKSQLARMRE 103 (305)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333444456666677664
No 258
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=20.97 E-value=96 Score=34.44 Aligned_cols=30 Identities=33% Similarity=0.762 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCcceEEEEEEEc-CceEEEE
Q 005099 259 NNETILVFDLGGGTFDVSVLEVG-DGVFEVL 288 (714)
Q Consensus 259 ~~~~vLVvD~GgGT~Dvsv~~~~-~~~~~vl 288 (714)
....+|++|+||..+-++++++. ++.+++-
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 36789999999999999999997 4555443
No 259
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.36 E-value=3.1e+02 Score=26.52 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHH
Q 005099 610 SVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEG-----STQAMKDTMAALNQEVMQLGQS 670 (714)
Q Consensus 610 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~-----~~~~~~~~~~~l~~~~~~i~~~ 670 (714)
.|+.++++.|+ .+|++|++++ ++++++++++. +.++.-+.+-.=++++..+...
T Consensus 5 efL~~L~~~L~----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLK----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHH----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 56777777776 3677766544 55666666542 3555555555555555555543
No 260
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=20.22 E-value=6.5e+02 Score=23.34 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=50.7
Q ss_pred eeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeE
Q 005099 162 SYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLR 241 (714)
Q Consensus 162 ~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~ 241 (714)
|..+.-+.+|.+++. ++.++.+++...+-...+ +..-..++|..=..-+..+--.+.++++.||+..+.
T Consensus 61 ~i~v~i~~~G~~~l~----~~~v~~~~l~~~l~~~~~-------~~~~~~v~i~aD~~v~y~~vv~vm~~l~~aG~~~v~ 129 (137)
T COG0848 61 PIIVSVDADGQIYLN----DKPVSLEELEAALAALAK-------GKKNPRVVIRADKNVKYGTVVKVMDLLKEAGFKKVG 129 (137)
T ss_pred CEEEEEeCCCcEEEC----CccccHHHHHHHHHHHhc-------CCCCceEEEEeCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 444444566666654 233555555544443332 111126888888888888888999999999999999
Q ss_pred EechhHH
Q 005099 242 IINEPTA 248 (714)
Q Consensus 242 li~Ep~A 248 (714)
|+.++.+
T Consensus 130 L~t~~~~ 136 (137)
T COG0848 130 LVTEKKK 136 (137)
T ss_pred EEecCCC
Confidence 9988753
No 261
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=20.20 E-value=85 Score=28.10 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCc--hhHHHHHHhhcCC
Q 005099 382 LDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRI--PAVQELVKKMTGR 428 (714)
Q Consensus 382 ~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssri--p~v~~~l~~~fg~ 428 (714)
-......|+++|+++++++++|+.|..-|-++.. +.=.+.|++.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3455677999999999999999999998877765 3333457788854
Done!