BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005100
         (714 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
           Complex With Zm241385 At 1.8a Resolution
          Length = 447

 Score = 35.4 bits (80), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 568 AGVLFPLLIMLLVPVRQYLLPKFFKAVHLQDLDAAEYEEAPAISYNMTFEERAIDIDGGE 627
           A VL PLL+ML V +R +L  +      L DL+    +    ++ N+   E+A   D   
Sbjct: 209 ACVLVPLLLMLGVYLRIFLAAR----RQLADLE----DNWETLNDNLKVIEKA---DNAA 257

Query: 628 ILDEMITRSRGEIRHSQSPKITSSTPTSLEDKRSPHSPSMQ 668
            + + +T+ R     +Q      +TP  LEDK SP SP M+
Sbjct: 258 QVKDALTKMRAAALDAQ-----KATPPKLEDK-SPDSPEMK 292


>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase
          Length = 540

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 459 PVEVKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPG----NQFWER 514
           PVE++   L +  +A + GG   A+  ++  P    W    ++ I  LPG    NQF+  
Sbjct: 399 PVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTPYANQFYRE 458

Query: 515 I 515
           I
Sbjct: 459 I 459


>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
           Arthrobacter Nicotinovorans
 pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
           Oxidase From Arthrobacter Nicotinovorans
 pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
           With Substrate Bound At Active Site And Inhibitor At
           Exit Cavity
 pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
           Methylmyosmine Product Formed During Catalytic Turnover
 pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
           Product Formed During Catalytic Turnover
 pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
           At Active Site
 pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
           Bound At Active Site And Turnover Product At Exit Cavity
 pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
 pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
 pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
           6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
           Nicotinovorans
 pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
          Length = 431

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 443 VDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMA 502
           +DE   +   D+ D +  E+ E RL  ++  +   G V  + +           + A   
Sbjct: 198 LDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDG------HAFQAHSV 251

Query: 503 IENLPGNQFWERILLLFTAPSRRYKVLEENHA 534
           I   P N  W RI+     P RR  V+EE H 
Sbjct: 252 IVATPMNT-WRRIVFTPALPERRRSVIEEGHG 282


>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
           Oxidase, Crystal Form P3121
 pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
           Oxidase, Crystal Form P3121
          Length = 425

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 443 VDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMA 502
           +DE   +   D+ D +  E+ E RL  ++  +   G V  + +           + A   
Sbjct: 198 LDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDG------HAFQAHSV 251

Query: 503 IENLPGNQFWERILLLFTAPSRRYKVLEENHA 534
           I   P N  W RI+     P RR  V+EE H 
Sbjct: 252 IVATPMNT-WRRIVFTPALPERRRSVIEEGHG 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,321,812
Number of Sequences: 62578
Number of extensions: 813168
Number of successful extensions: 2023
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 5
length of query: 714
length of database: 14,973,337
effective HSP length: 106
effective length of query: 608
effective length of database: 8,340,069
effective search space: 5070761952
effective search space used: 5070761952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)